HHsearch alignment for GI: 254780466 and conserved domain: COG0286
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms].
Probab=92.78 E-value=0.33 Score=27.51 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCCCCC-HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH-C-----CEEEEEEECHHHHHHHHHHHH--HCC-C---
Q ss_conf 687781-89999999852899888998688851799999980-9-----816999728999999999996--305-6---
Q gi|254780466|r 204 HPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-R-----RSFIGIEMKQDYIDIATKRIA--SVQ-P--- 270 (375)
Q Consensus 204 HPTqKP-~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l-g-----R~~IGiE~~~~Y~~~a~~Rl~--~~~-~--- 270 (375)
T Consensus 168 fyTP~~v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 168 FYTPREVSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 05879999999997577--6565234733540379999999997515550499895668899999961166278742234
Q ss_pred -CCHHHHCCCC----CC-C---CCCCCCHHHHH---------------HCCCCCC--CC-EEEC-------CCCCEEEEE
Q ss_conf -8765630244----43-3---37755234698---------------8286587--76-5766-------898069998
Q gi|254780466|r 271 -LGNIELTVLT----GK-R---TEPRVAFNLLV---------------ERGLIQP--GQ-ILTN-------AQGNISATV 316 (375)
Q Consensus 271 -~~~~~~~~~~----~~-~---~~~rvpfg~li---------------e~g~l~~--g~-~L~~-------~~~~~~a~v 316 (375)
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~d~afi~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 33442368733234665550168657995544434433100243200025778889527899999999971867705899
Q ss_pred CCCCCEEECCEECCHHHHHHH
Q ss_conf 159817869865319999987
Q gi|254780466|r 317 CADGTLISGTELGSIHRVGAK 337 (375)
Q Consensus 317 ~~DG~l~~~~~~gsIh~i~a~ 337 (375)
T Consensus 326 l~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 326 LPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred ECCCCCCCCCCHHHHHHHHHH
T ss_conf 258866277722579999875