HHsearch alignment for GI: 254780466 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.03 E-value=2e-05 Score=53.15 Aligned_cols=50 Identities=34% Similarity=0.387 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHCC------CCCCEEEECCCCCHHHHHHHHH--------HCCEEEEEEE
Q ss_conf 687781899999998528------9988899868885179999998--------0981699972
Q gi|254780466|r 204 HPTQKPEALLSRILVSST------KPGDIILDPFFGSGTSGAVAKK--------LRRSFIGIEM 253 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S------~~gDiVLDPF~GSGTT~~aA~~--------lgR~~IGiE~ 253 (375)
T Consensus 169 g~APLKEnLAAalL~~sgW~~~~~~~~~pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~ 232 (716)
T PRK11783 169 GEAPLKENLAAAILLRSGWPEIAAQGGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSA 232 (716)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 8788766999999997499633457998134466684378999999984779886545456411