HHsearch alignment for GI: 254780466 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=97.86 E-value=8.4e-05 Score=49.35 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=81.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-HHHH-CCEEEEEEECHHHHHHHHHHHHHCCC-----CCHHHHC
Q ss_conf 877818999999985289988899868885179999-9980-98169997289999999999963056-----8765630
Q gi|254780466|r 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKL-RRSFIGIEMKQDYIDIATKRIASVQP-----LGNIELT 277 (375)
Q Consensus 205 PTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~a-A~~l-gR~~IGiE~~~~Y~~~a~~Rl~~~~~-----~~~~~~~ 277 (375)
T Consensus 69 PRpETE~Lve~~l~~~~~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~ 148 (251)
T TIGR03534 69 PRPDTEELVEAALERLKKGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFE 148 (251)
T ss_pred ECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 48833999999999731489869995567169999999967997899998987999999999998099826865131432
Q ss_pred CCCCC------CCCCCCCHHHHH--HCCC--CCCCCEEECCC----------CCEEEEECCCCCEEECCEECCHHHHHHH
Q ss_conf 24443------337755234698--8286--58776576689----------8069998159817869865319999987
Q gi|254780466|r 278 VLTGK------RTEPRVAFNLLV--ERGL--IQPGQILTNAQ----------GNISATVCADGTLISGTELGSIHRVGAK 337 (375)
Q Consensus 278 ~~~~~------~~~~rvpfg~li--e~g~--l~~g~~L~~~~----------~~~~a~v~~DG~l~~~~~~gsIh~i~a~ 337 (375)
T Consensus 149 ~~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~--Eig~~q~-~~v 225 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLL--EIGYDQG-EAV 225 (251)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--EECHHHH-HHH
T ss_conf 1568986689978998874566632860102672999717984699999999999985367988999--9683789-999
Q ss_pred HCCCCCCCCEEEEEEEEC
Q ss_conf 449810067114679759
Q gi|254780466|r 338 VSGSETCNGWNFWYFEKL 355 (375)
Q Consensus 338 ~~~~~~cNGw~fw~~~~~ 355 (375)
T Consensus 226 ~~l~-~~~gf~~i~~~kD 242 (251)
T TIGR03534 226 RALF-EAAGFADVETRKD 242 (251)
T ss_pred HHHH-HHCCCCEEEEEEC
T ss_conf 9999-9689970688507