Query gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 375
No_of_seqs 229 out of 1832
Neff 6.3
Searched_HMMs 39220
Date Sun May 29 16:59:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780466.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11524 putative methyltransf 100.0 0 0 444.3 21.3 243 18-283 6-268 (284)
2 PRK13699 putative methylase; P 100.0 0 0 401.3 19.7 214 20-274 1-214 (227)
3 COG0863 DNA modification methy 100.0 0 0 359.2 15.4 284 15-303 11-301 (302)
4 pfam01555 N6_N4_Mtase DNA meth 100.0 0 0 349.1 19.6 208 40-263 1-221 (221)
5 COG2189 Adenine specific DNA m 99.7 1.3E-17 3.2E-22 127.3 5.2 230 38-270 121-500 (590)
6 pfam01170 UPF0020 Putative RNA 98.8 2.7E-08 6.9E-13 70.5 7.8 69 203-271 7-78 (171)
7 COG1041 Predicted DNA modifica 98.7 2.9E-08 7.3E-13 70.4 6.4 67 203-269 176-243 (347)
8 pfam05063 MT-A70 MT-A70. MT-A7 98.4 5.4E-06 1.4E-10 56.6 9.9 158 40-234 1-165 (176)
9 COG2521 Predicted archaeal met 98.3 2.1E-06 5.3E-11 59.1 6.4 66 197-262 105-174 (287)
10 COG0116 Predicted N6-adenine-s 98.2 2.7E-06 6.8E-11 58.4 6.0 99 182-280 148-289 (381)
11 PRK11783 rlmL 23S rRNA m(2)G24 98.0 2E-05 5E-10 53.2 7.0 50 204-253 169-232 (716)
12 COG1041 Predicted DNA modifica 98.0 2.4E-05 6.2E-10 52.6 6.5 17 35-51 260-276 (347)
13 COG2265 TrmA SAM-dependent met 97.9 5.7E-05 1.5E-09 50.4 7.8 95 209-311 278-373 (432)
14 TIGR03534 RF_mod_HemK protein- 97.9 8.4E-05 2.1E-09 49.3 7.7 147 205-355 69-242 (251)
15 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.00034 8.6E-09 45.6 10.2 54 213-267 543-597 (716)
16 pfam02475 Met_10 Met-10+ like- 97.8 0.0001 2.7E-09 48.8 7.3 49 219-267 96-146 (199)
17 COG4123 Predicted O-methyltran 97.8 0.00023 5.8E-09 46.7 8.8 120 18-161 92-216 (248)
18 KOG2671 consensus 97.7 8.6E-06 2.2E-10 55.4 1.1 55 204-259 188-244 (421)
19 PRK01544 bifunctional N5-gluta 97.7 0.00019 5E-09 47.1 7.9 193 22-267 189-390 (503)
20 PRK01544 bifunctional N5-gluta 97.7 5E-05 1.3E-09 50.7 4.6 102 204-308 94-231 (503)
21 pfam01170 UPF0020 Putative RNA 97.7 0.00017 4.4E-09 47.4 7.0 64 22-110 82-145 (171)
22 PRK10909 rsmD 16S rRNA m(2)G96 97.6 0.00059 1.5E-08 44.2 9.2 112 195-308 24-157 (198)
23 TIGR03533 L3_gln_methyl protei 97.6 0.00018 4.5E-09 47.4 6.0 59 210-268 106-168 (284)
24 PRK09328 N5-glutamine S-adenos 97.6 0.00036 9.2E-09 45.5 7.5 66 204-269 90-157 (277)
25 pfam05175 MTS Methyltransferas 97.6 0.00013 3.2E-09 48.3 5.1 25 22-49 84-108 (170)
26 pfam05958 tRNA_U5-meth_tr tRNA 97.6 0.00036 9.2E-09 45.5 7.4 61 204-265 179-239 (353)
27 PRK05031 tRNA (uracil-5-)-meth 97.5 0.00047 1.2E-08 44.8 7.3 58 209-266 193-250 (363)
28 PRK09329 N5-glutamine S-adenos 97.5 0.00012 3.2E-09 48.3 4.4 65 205-269 89-157 (285)
29 COG1092 Predicted SAM-dependen 97.5 0.00018 4.6E-09 47.3 5.2 51 215-266 210-261 (393)
30 COG2520 Predicted methyltransf 97.5 0.00032 8E-09 45.8 6.4 51 217-267 182-233 (341)
31 pfam02384 N6_Mtase N-6 DNA Met 97.5 0.00042 1.1E-08 45.1 6.6 76 22-105 108-183 (312)
32 pfam09445 Methyltransf_15 RNA 97.4 0.00042 1.1E-08 45.1 6.1 28 23-50 53-82 (165)
33 pfam03602 Cons_hypoth95 Conser 97.4 0.00077 2E-08 43.5 7.4 72 199-270 17-91 (181)
34 PRK13168 rumA 23S rRNA 5-methy 97.4 0.00058 1.5E-08 44.2 6.5 59 209-267 279-338 (440)
35 COG0742 N6-adenine-specific me 97.3 0.0025 6.3E-08 40.4 8.8 74 195-270 14-91 (187)
36 PRK03522 rumB 23S rRNA methylu 97.3 0.0019 4.8E-08 41.1 7.9 58 210-267 219-277 (375)
37 KOG2098 consensus 97.2 0.00062 1.6E-08 44.0 5.2 98 38-159 388-491 (591)
38 pfam06325 PrmA Ribosomal prote 97.2 0.0018 4.7E-08 41.2 7.1 63 203-268 143-206 (294)
39 PRK00517 prmA ribosomal protei 97.2 0.0022 5.7E-08 40.7 7.4 62 203-267 145-207 (298)
40 PRK10909 rsmD 16S rRNA m(2)G96 97.1 0.001 2.6E-08 42.8 4.7 57 21-107 103-159 (198)
41 COG0742 N6-adenine-specific me 97.0 0.001 2.6E-08 42.7 4.0 72 9-107 82-155 (187)
42 pfam02384 N6_Mtase N-6 DNA Met 96.9 0.0016 4.2E-08 41.5 5.0 61 204-266 28-98 (312)
43 COG2264 PrmA Ribosomal protein 96.8 0.0083 2.1E-07 37.2 7.5 61 203-266 145-206 (300)
44 PRK11805 N5-glutamine S-adenos 96.8 0.0026 6.6E-08 40.3 4.8 60 210-269 118-181 (307)
45 COG2890 HemK Methylase of poly 96.7 0.0078 2E-07 37.4 6.9 66 204-269 91-158 (280)
46 TIGR00095 TIGR00095 putative m 96.7 0.0066 1.7E-07 37.8 6.4 60 210-269 42-102 (210)
47 KOG2671 consensus 96.6 0.0027 6.9E-08 40.2 3.9 12 224-235 286-297 (421)
48 TIGR01177 TIGR01177 conserved 96.5 0.0022 5.7E-08 40.7 3.3 70 203-272 182-253 (358)
49 pfam03602 Cons_hypoth95 Conser 96.5 0.0061 1.6E-07 38.0 5.4 61 18-107 90-152 (181)
50 TIGR00406 prmA ribosomal prote 96.5 0.0094 2.4E-07 36.9 6.0 117 203-326 177-300 (330)
51 KOG2187 consensus 96.5 0.0031 8E-08 39.8 3.6 55 210-264 368-424 (534)
52 TIGR01934 MenG_MenH_UbiE ubiqu 96.4 0.0028 7.2E-08 40.0 3.0 52 22-105 109-160 (242)
53 PRK07580 Mg-protoporphyrin IX 96.3 0.023 5.9E-07 34.5 7.4 60 210-269 50-109 (230)
54 PRK03612 spermidine synthase; 96.2 0.021 5.3E-07 34.8 6.7 98 12-140 343-445 (516)
55 PRK00216 ubiE ubiquinone/menaq 96.1 0.042 1.1E-06 33.0 7.8 51 220-270 48-101 (239)
56 TIGR03534 RF_mod_HemK protein- 96.0 0.058 1.5E-06 32.1 8.2 90 22-125 140-236 (251)
57 cd02440 AdoMet_MTases S-adenos 96.0 0.0073 1.9E-07 37.5 3.6 41 227-267 2-43 (107)
58 PTZ00098 phosphoethanolamine N 96.0 0.013 3.3E-07 36.0 4.8 125 210-341 38-193 (263)
59 TIGR00479 rumA 23S rRNA (uraci 96.0 0.021 5.4E-07 34.7 5.8 79 209-288 279-358 (434)
60 pfam02086 MethyltransfD12 D12 96.0 0.034 8.7E-07 33.5 6.9 52 211-262 7-59 (254)
61 pfam01564 Spermine_synth Sperm 96.0 0.089 2.3E-06 30.9 8.9 93 16-140 126-223 (240)
62 PRK11873 arsM arsenite S-adeno 95.9 0.024 6.2E-07 34.4 6.0 51 219-269 69-122 (258)
63 PTZ00098 phosphoethanolamine N 95.9 0.063 1.6E-06 31.9 8.0 20 252-271 202-221 (263)
64 TIGR00571 dam DNA adenine meth 95.9 0.024 6.2E-07 34.4 5.7 85 21-121 203-295 (327)
65 pfam05430 DUF752 Protein of un 95.9 0.019 4.7E-07 35.1 5.1 74 21-125 33-106 (124)
66 pfam01596 Methyltransf_3 O-met 95.8 0.025 6.4E-07 34.3 5.6 24 23-46 100-127 (204)
67 pfam01209 Ubie_methyltran ubiE 95.7 0.073 1.9E-06 31.5 7.5 55 215-269 38-96 (233)
68 PRK11873 arsM arsenite S-adeno 95.6 0.042 1.1E-06 33.0 6.2 50 23-104 128-177 (258)
69 PRK00121 trmB tRNA (guanine-N( 95.6 0.04 1E-06 33.0 6.0 65 22-111 107-175 (229)
70 TIGR00095 TIGR00095 putative m 95.6 0.048 1.2E-06 32.6 6.3 65 22-108 113-179 (210)
71 COG1743 Adenine-specific DNA m 95.5 0.017 4.4E-07 35.3 3.9 46 78-125 560-611 (875)
72 PRK09489 rsmC 16S ribosomal RN 95.5 0.025 6.4E-07 34.3 4.6 47 222-268 195-243 (342)
73 pfam05175 MTS Methyltransferas 95.5 0.036 9.3E-07 33.3 5.4 49 221-269 29-79 (170)
74 COG2521 Predicted archaeal met 95.5 0.015 3.9E-07 35.6 3.4 87 15-128 181-275 (287)
75 COG2230 Cfa Cyclopropane fatty 95.4 0.039 1E-06 33.1 5.3 81 218-300 67-148 (283)
76 pfam05148 Methyltransf_8 Hypot 95.4 0.037 9.5E-07 33.3 5.1 41 87-127 134-177 (214)
77 COG2890 HemK Methylase of poly 95.3 0.16 4E-06 29.5 8.1 95 21-123 160-255 (280)
78 COG2226 UbiE Methylase involve 95.2 0.026 6.7E-07 34.2 4.0 46 223-268 51-98 (238)
79 COG2263 Predicted RNA methylas 95.2 0.13 3.3E-06 29.9 7.5 63 205-267 23-90 (198)
80 COG0220 Predicted S-adenosylme 95.1 0.072 1.8E-06 31.5 6.0 69 20-113 99-171 (227)
81 PRK08317 hypothetical protein; 95.1 0.039 9.9E-07 33.1 4.6 52 22-105 72-123 (241)
82 pfam02390 Methyltransf_4 Putat 95.1 0.12 3.1E-06 30.2 7.0 79 19-122 70-154 (199)
83 PRK10904 DNA adenine methylase 95.0 0.097 2.5E-06 30.7 6.5 27 22-50 159-185 (271)
84 KOG1541 consensus 94.9 0.051 1.3E-06 32.4 4.7 58 210-267 34-94 (270)
85 PRK00216 ubiE ubiquinone/menaq 94.9 0.023 5.8E-07 34.5 2.9 20 86-105 138-157 (239)
86 pfam09445 Methyltransf_15 RNA 94.6 0.03 7.7E-07 33.8 3.0 44 225-268 2-45 (165)
87 PRK07402 precorrin-6B methylas 94.5 0.33 8.5E-06 27.5 8.1 52 218-269 35-88 (196)
88 COG4122 Predicted O-methyltran 94.5 0.11 2.7E-06 30.5 5.5 147 204-361 40-208 (219)
89 PRK00377 cbiT cobalt-precorrin 94.5 0.34 8.7E-06 27.4 8.1 65 205-269 22-89 (198)
90 COG0275 Predicted S-adenosylme 94.4 0.24 6.2E-06 28.3 7.2 73 23-113 10-87 (314)
91 COG2242 CobL Precorrin-6B meth 94.4 0.35 8.9E-06 27.3 8.0 83 205-288 16-100 (187)
92 PRK09328 N5-glutamine S-adenos 94.4 0.38 9.8E-06 27.1 8.2 90 21-124 161-256 (277)
93 cd02440 AdoMet_MTases S-adenos 94.4 0.11 2.8E-06 30.4 5.4 54 22-105 50-103 (107)
94 COG2226 UbiE Methylase involve 94.3 0.2 5.1E-06 28.8 6.6 52 22-105 104-155 (238)
95 pfam07021 MetW Methionine bios 94.1 0.26 6.7E-06 28.1 6.9 23 23-45 59-81 (193)
96 pfam01209 Ubie_methyltran ubiE 93.9 0.033 8.4E-07 33.6 1.9 20 86-105 133-152 (233)
97 pfam02390 Methyltransf_4 Putat 93.8 0.28 7.2E-06 27.9 6.6 52 218-269 15-68 (199)
98 pfam08123 DOT1 Histone methyla 93.7 0.35 8.8E-06 27.4 6.9 59 211-269 29-90 (205)
99 PRK08317 hypothetical protein; 93.7 0.31 7.8E-06 27.7 6.6 55 214-268 9-67 (241)
100 TIGR03533 L3_gln_methyl protei 93.7 0.24 6E-06 28.4 6.0 91 22-134 175-272 (284)
101 pfam01861 DUF43 Protein of unk 93.7 0.16 4E-06 29.4 5.1 29 22-50 95-123 (243)
102 COG1743 Adenine-specific DNA m 93.6 0.29 7.3E-06 27.9 6.4 13 38-50 488-500 (875)
103 PRK00312 pcm protein-L-isoaspa 93.6 0.61 1.6E-05 25.9 8.3 60 210-269 64-124 (213)
104 pfam10237 N6-adenineMlase Prob 93.5 0.33 8.5E-06 27.5 6.5 50 30-110 77-126 (161)
105 PRK01581 speE spermidine synth 93.4 0.4 1E-05 27.0 6.8 35 13-48 190-224 (363)
106 PRK00050 mraW S-adenosyl-methy 93.2 0.62 1.6E-05 25.8 7.5 24 23-50 10-33 (309)
107 PRK13942 protein-L-isoaspartat 93.0 0.74 1.9E-05 25.4 8.3 60 210-269 62-125 (214)
108 COG2813 RsmC 16S RNA G1207 met 92.9 0.28 7.2E-06 27.9 5.3 49 222-270 157-207 (300)
109 COG0286 HsdM Type I restrictio 92.8 0.33 8.4E-06 27.5 5.6 132 204-337 168-346 (489)
110 KOG2904 consensus 92.7 0.83 2.1E-05 25.1 7.6 71 204-274 125-201 (328)
111 PRK08287 cobalt-precorrin-6Y C 92.6 0.84 2.1E-05 25.0 8.2 52 218-269 25-78 (186)
112 smart00828 PKS_MT Methyltransf 92.6 0.38 9.7E-06 27.1 5.7 19 86-104 84-102 (224)
113 COG0338 Dam Site-specific DNA 92.5 0.58 1.5E-05 26.0 6.6 27 22-50 158-185 (274)
114 pfam02353 CMAS Cyclopropane-fa 92.5 0.87 2.2E-05 24.9 8.3 65 203-269 43-109 (273)
115 PRK13944 protein-L-isoaspartat 92.5 0.88 2.2E-05 24.9 8.1 60 210-269 58-121 (205)
116 pfam02086 MethyltransfD12 D12 92.4 0.41 1E-05 26.9 5.7 15 32-47 13-27 (254)
117 KOG0820 consensus 92.4 0.76 1.9E-05 25.3 7.0 66 204-269 39-104 (315)
118 pfam02475 Met_10 Met-10+ like- 92.3 0.31 8E-06 27.6 5.0 17 226-242 172-188 (199)
119 KOG2904 consensus 92.3 0.23 5.9E-06 28.4 4.3 15 35-49 218-232 (328)
120 PRK10901 16S rRNA methyltransf 92.1 0.92 2.3E-05 24.8 7.2 50 220-269 242-293 (428)
121 PRK00811 spermidine synthase; 92.0 0.5 1.3E-05 26.4 5.7 60 19-105 133-192 (283)
122 KOG2078 consensus 91.8 0.081 2.1E-06 31.2 1.5 53 214-267 241-293 (495)
123 COG4123 Predicted O-methyltran 91.7 0.41 1E-05 26.9 5.0 56 210-267 33-90 (248)
124 pfam00398 RrnaAD Ribosomal RNA 91.7 1.1 2.8E-05 24.3 7.3 27 23-51 80-106 (258)
125 pfam01795 Methyltransf_5 MraW 91.6 1.1 2.8E-05 24.3 7.2 21 100-123 71-91 (310)
126 TIGR00537 hemK_rel_arch methyl 91.4 0.47 1.2E-05 26.6 5.0 97 20-125 62-164 (183)
127 PRK01747 mnmC 5-methylaminomet 90.9 0.6 1.5E-05 25.9 5.2 74 22-126 145-218 (660)
128 PRK04457 spermidine synthase; 90.8 1.2 3.1E-05 24.1 6.6 58 20-104 118-175 (262)
129 TIGR01934 MenG_MenH_UbiE ubiqu 90.7 0.67 1.7E-05 25.6 5.3 59 211-269 30-100 (242)
130 COG1867 TRM1 N2,N2-dimethylgua 90.3 0.89 2.3E-05 24.9 5.6 49 22-105 105-153 (380)
131 smart00650 rADc Ribosomal RNA 90.0 1 2.6E-05 24.5 5.8 55 213-267 2-57 (169)
132 COG0421 SpeE Spermidine syntha 89.8 1.4 3.6E-05 23.7 6.3 50 219-269 73-124 (282)
133 TIGR00571 dam DNA adenine meth 89.8 0.69 1.8E-05 25.5 4.7 11 89-99 67-77 (327)
134 PRK05785 hypothetical protein; 89.7 1.4 3.6E-05 23.6 6.3 55 213-268 41-95 (225)
135 TIGR01177 TIGR01177 conserved 89.7 0.52 1.3E-05 26.3 4.0 61 22-103 257-319 (358)
136 pfam11599 AviRa RRNA methyltra 89.7 0.69 1.8E-05 25.5 4.6 75 198-272 25-104 (249)
137 PRK06922 hypothetical protein; 89.2 0.41 1.1E-05 26.9 3.2 52 215-267 413-466 (679)
138 COG2518 Pcm Protein-L-isoaspar 89.0 1.9 4.8E-05 22.9 8.2 60 209-270 60-119 (209)
139 PRK01683 trans-aconitate 2-met 88.8 1.4 3.5E-05 23.7 5.7 19 87-105 111-129 (252)
140 COG0144 Sun tRNA and rRNA cyto 88.7 1.6 4.1E-05 23.3 5.9 54 218-271 151-208 (355)
141 pfam10672 Methyltrans_SAM S-ad 88.5 2 5E-05 22.8 6.3 53 215-268 116-169 (286)
142 pfam05971 Methyltransf_10 Prot 88.5 0.8 2.1E-05 25.1 4.3 134 225-371 67-228 (254)
143 COG4889 Predicted helicase [Ge 88.4 0.52 1.3E-05 26.3 3.3 71 30-104 939-1021(1518)
144 PRK10258 biotin biosynthesis p 88.4 1.8 4.7E-05 23.0 6.1 34 87-120 121-155 (251)
145 pfam08242 Methyltransf_12 Meth 88.3 1.2 3.1E-05 24.1 5.1 44 228-271 1-46 (98)
146 COG0338 Dam Site-specific DNA 88.1 0.31 7.8E-06 27.7 2.0 16 30-48 18-33 (274)
147 pfam03291 Pox_MCEL mRNA cappin 88.0 1.4 3.6E-05 23.6 5.3 43 224-266 64-107 (327)
148 pfam01135 PCMT Protein-L-isoas 87.9 2.2 5.6E-05 22.5 8.3 60 210-269 59-122 (205)
149 PRK04338 N(2),N(2)-dimethylgua 87.7 1.9 5E-05 22.8 5.9 50 21-105 103-152 (376)
150 PRK11727 putative SAM-dependen 87.7 0.64 1.6E-05 25.7 3.4 135 224-371 118-288 (326)
151 TIGR00091 TIGR00091 tRNA (guan 87.2 2.1 5.3E-05 22.6 5.8 90 22-136 82-180 (216)
152 TIGR02021 BchM-ChlM magnesium 87.0 1.5 3.9E-05 23.4 5.0 86 209-294 40-131 (224)
153 COG3392 Adenine-specific DNA m 86.2 1.3 3.4E-05 23.8 4.4 31 18-51 185-215 (330)
154 PRK06202 hypothetical protein; 86.2 2.7 7E-05 21.9 6.0 45 223-267 61-111 (233)
155 KOG4300 consensus 86.1 0.84 2.1E-05 25.0 3.3 18 87-104 163-180 (252)
156 PRK05134 3-demethylubiquinone- 86.1 2.8 7.1E-05 21.9 7.1 48 221-268 46-93 (233)
157 KOG2899 consensus 85.9 2.2 5.5E-05 22.5 5.3 52 218-269 53-106 (288)
158 KOG3045 consensus 85.9 1.3 3.2E-05 23.9 4.1 28 209-237 167-194 (325)
159 pfam01189 Nol1_Nop2_Fmu NOL1/N 85.6 2.8 7.1E-05 21.9 5.7 50 220-269 81-133 (277)
160 PRK11705 cyclopropane fatty ac 85.4 3 7.6E-05 21.7 7.5 65 203-269 148-214 (383)
161 pfam11149 DUF2924 Protein of u 85.2 1.7 4.3E-05 23.2 4.5 55 296-352 78-135 (136)
162 PRK13255 thiopurine S-methyltr 85.2 3.1 7.9E-05 21.6 7.2 57 204-260 18-74 (218)
163 TIGR02081 metW methionine bios 85.1 2.8 7.2E-05 21.8 5.6 46 23-98 67-112 (205)
164 KOG3191 consensus 85.0 3.1 8E-05 21.6 6.4 95 29-134 100-195 (209)
165 COG4725 IME4 Transcriptional a 85.0 2 5.1E-05 22.7 4.8 66 93-159 50-120 (198)
166 KOG2097 consensus 84.9 3.2 8.1E-05 21.5 7.7 119 91-231 196-323 (397)
167 pfam00145 DNA_methylase C-5 cy 84.2 2.7 6.8E-05 22.0 5.1 25 23-49 45-70 (319)
168 PRK11933 yebU rRNA (cytosine-C 83.9 3.5 8.9E-05 21.2 8.2 92 23-123 168-263 (471)
169 KOG1663 consensus 83.2 3.1 8E-05 21.6 5.1 58 210-267 62-120 (237)
170 KOG1661 consensus 82.6 1.6 4E-05 23.4 3.4 53 219-273 78-136 (237)
171 cd00315 Cyt_C5_DNA_methylase C 81.6 4.2 0.00011 20.8 5.3 35 16-50 39-73 (275)
172 KOG2730 consensus 80.8 1.7 4.4E-05 23.1 3.1 57 209-267 82-138 (263)
173 PRK11088 rrmA 23S rRNA methylt 80.3 4.8 0.00012 20.4 6.9 65 204-268 66-135 (272)
174 pfam08241 Methyltransf_11 Meth 80.1 2.6 6.7E-05 22.0 3.8 17 87-103 78-94 (95)
175 PTZ00053 methionine aminopepti 79.7 1.8 4.7E-05 23.0 2.9 93 222-317 313-416 (435)
176 KOG1709 consensus 79.4 5.1 0.00013 20.3 5.1 55 212-271 90-146 (271)
177 COG4076 Predicted RNA methylas 78.6 2.9 7.5E-05 21.7 3.7 43 223-265 32-74 (252)
178 KOG1975 consensus 78.5 3.6 9.1E-05 21.2 4.1 52 216-267 110-162 (389)
179 KOG3420 consensus 77.7 5.1 0.00013 20.3 4.7 67 204-270 26-96 (185)
180 pfam07942 N2227 N2227-like pro 77.7 5.6 0.00014 20.0 4.9 13 113-125 70-82 (268)
181 PRK00274 ksgA dimethyladenosin 77.6 5.8 0.00015 19.9 6.4 48 6-53 63-116 (267)
182 TIGR02469 CbiT precorrin-6Y C5 77.4 5.8 0.00015 19.9 6.1 54 220-273 16-73 (135)
183 COG2227 UbiG 2-polyprenyl-3-me 76.9 4.5 0.00012 20.6 4.3 45 222-266 58-102 (243)
184 PRK06148 hypothetical protein; 76.9 2 5E-05 22.8 2.4 42 203-248 663-705 (1015)
185 TIGR02987 met_A_Alw26 type II 76.7 1.7 4.2E-05 23.2 2.0 20 86-105 208-227 (603)
186 PRK13946 shikimate kinase; Pro 75.6 4.4 0.00011 20.7 3.9 38 214-252 12-52 (195)
187 COG4976 Predicted methyltransf 75.1 3.6 9.2E-05 21.2 3.4 102 207-308 109-224 (287)
188 COG2939 Carboxypeptidase C (ca 74.7 6.9 0.00018 19.4 7.0 75 39-122 146-223 (498)
189 PRK11154 fadJ multifunctional 74.6 3.4 8.6E-05 21.3 3.1 127 226-354 314-453 (706)
190 PRK13943 protein-L-isoaspartat 74.4 7 0.00018 19.4 8.0 58 212-269 63-124 (317)
191 COG2961 ComJ Protein involved 74.1 7.2 0.00018 19.4 8.1 79 17-123 132-215 (279)
192 KOG2356 consensus 73.4 2.6 6.6E-05 22.0 2.3 121 20-158 163-292 (366)
193 pfam05724 TPMT Thiopurine S-me 73.0 7.6 0.00019 19.2 8.2 59 209-267 8-66 (203)
194 PRK00131 aroK shikimate kinase 72.8 4.8 0.00012 20.4 3.5 24 226-249 7-33 (175)
195 COG4262 Predicted spermidine s 72.0 8 0.00021 19.1 5.8 34 14-48 341-374 (508)
196 PRK13948 shikimate kinase; Pro 71.8 4.5 0.00011 20.6 3.2 25 226-250 13-40 (182)
197 KOG3010 consensus 71.4 8.3 0.00021 19.0 4.9 21 86-106 116-137 (261)
198 pfam04378 DUF519 Protein of un 71.4 8.3 0.00021 19.0 11.0 77 19-123 103-184 (245)
199 PRK11188 rrmJ 23S rRNA methylt 71.2 8.4 0.00021 19.0 5.9 30 210-239 141-174 (209)
200 PRK06931 diaminobutyrate--2-ox 70.1 4.1 0.0001 20.8 2.7 12 312-323 364-375 (454)
201 PTZ00338 dimethyladenosine tra 69.6 9.1 0.00023 18.7 7.9 26 22-51 90-115 (296)
202 PRK06035 3-hydroxyacyl-CoA deh 69.4 2.3 5.9E-05 22.3 1.3 48 86-137 101-148 (291)
203 TIGR02085 meth_trns_rumB 23S r 68.8 6.6 0.00017 19.6 3.5 84 226-309 240-346 (386)
204 PRK00625 shikimate kinase; Pro 67.5 6 0.00015 19.8 3.1 27 226-252 3-32 (173)
205 pfam06506 PrpR_N Propionate ca 67.2 10 0.00026 18.4 4.8 60 204-267 104-163 (169)
206 PRK03731 aroL shikimate kinase 66.8 6.9 0.00018 19.5 3.3 12 208-219 156-167 (172)
207 PRK08293 3-hydroxybutyryl-CoA 66.6 5.7 0.00015 20.0 2.8 33 86-118 100-132 (288)
208 COG4121 Uncharacterized conser 66.2 11 0.00027 18.3 4.8 26 209-238 133-158 (252)
209 TIGR03587 Pse_Me-ase pseudamin 65.8 11 0.00027 18.3 4.1 68 210-278 31-100 (204)
210 KOG1562 consensus 65.2 11 0.00028 18.2 6.9 61 21-107 177-237 (337)
211 PRK00615 glutamate-1-semialdeh 64.8 7.6 0.00019 19.2 3.2 46 210-268 188-234 (433)
212 pfam03059 NAS Nicotianamine sy 64.8 8.7 0.00022 18.8 3.5 41 229-269 125-171 (277)
213 PRK06209 glutamate-1-semialdeh 64.3 3.9 1E-04 21.0 1.6 40 211-267 175-215 (431)
214 pfam04952 AstE_AspA Succinylgl 64.2 12 0.0003 18.1 8.4 119 213-332 129-278 (289)
215 KOG2940 consensus 64.1 4.4 0.00011 20.7 1.9 70 33-103 88-171 (325)
216 PRK04612 argD bifunctional N-s 63.7 5.6 0.00014 20.0 2.3 12 312-323 332-343 (408)
217 PRK09117 consensus 63.5 6.3 0.00016 19.7 2.6 32 86-117 97-128 (282)
218 PRK09260 3-hydroxybutyryl-CoA 62.6 6.3 0.00016 19.7 2.4 19 290-308 261-281 (289)
219 pfam02005 TRM N2,N2-dimethylgu 61.2 13 0.00034 17.8 6.0 49 23-106 105-153 (375)
220 COG0703 AroK Shikimate kinase 60.6 7.4 0.00019 19.3 2.5 40 91-135 64-104 (172)
221 TIGR00438 rrmJ ribosomal RNA l 60.3 14 0.00035 17.7 6.4 81 23-125 78-169 (192)
222 PRK05639 4-aminobutyrate amino 59.8 9.4 0.00024 18.7 2.9 10 226-235 226-235 (457)
223 PRK13947 shikimate kinase; Pro 59.6 11 0.00029 18.2 3.3 14 209-222 154-167 (171)
224 PRK13256 thiopurine S-methyltr 59.5 14 0.00036 17.6 7.0 57 204-260 24-80 (226)
225 KOG3350 consensus 59.4 6.5 0.00017 19.6 2.1 48 204-258 124-180 (217)
226 TIGR00707 argD acetylornithine 58.9 7.3 0.00019 19.3 2.2 55 203-262 200-256 (402)
227 PRK06942 glutamate-1-semialdeh 58.5 13 0.00033 17.8 3.4 44 211-267 185-229 (425)
228 COG0030 KsgA Dimethyladenosine 57.4 15 0.00039 17.3 7.9 54 212-265 18-72 (259)
229 PRK07530 3-hydroxybutyryl-CoA 56.7 4.8 0.00012 20.4 1.0 21 290-310 263-285 (292)
230 PRK09221 beta alanine--pyruvat 56.5 9.5 0.00024 18.6 2.5 11 225-235 221-231 (445)
231 PRK11036 putative metallothion 56.1 16 0.00041 17.2 7.4 43 226-268 47-89 (256)
232 TIGR02279 PaaC-3OHAcCoADH 3-hy 56.1 6.5 0.00017 19.6 1.6 37 222-258 343-379 (508)
233 TIGR01091 upp uracil phosphori 56.0 5.7 0.00014 20.0 1.3 74 203-280 107-189 (213)
234 COG0035 Upp Uracil phosphoribo 56.0 6.9 0.00018 19.5 1.7 65 203-271 105-177 (210)
235 PRK00062 glutamate-1-semialdeh 55.0 11 0.00027 18.3 2.6 26 210-235 186-212 (429)
236 TIGR03246 arg_catab_astC succi 54.0 9.1 0.00023 18.7 2.0 12 312-323 324-335 (397)
237 TIGR00755 ksgA dimethyladenosi 53.6 18 0.00045 17.0 7.2 56 211-266 16-73 (277)
238 PHA02056 putative methyltransf 53.0 18 0.00046 16.9 3.8 15 223-237 204-218 (279)
239 cd01088 MetAP2 Methionine Amin 52.9 13 0.00032 17.9 2.6 96 223-323 177-288 (291)
240 PRK03244 argD acetylornithine 52.4 14 0.00037 17.5 2.8 12 312-323 326-337 (398)
241 KOG2361 consensus 52.1 15 0.00038 17.5 2.9 11 314-324 204-214 (264)
242 PRK06105 aminotransferase; Pro 51.7 19 0.00049 16.8 4.7 11 225-235 221-231 (460)
243 PRK11730 fadB multifunctional 51.6 12 0.00031 18.0 2.4 125 226-353 318-455 (715)
244 PRK05769 4-aminobutyrate amino 51.5 12 0.0003 18.0 2.3 10 226-235 226-235 (442)
245 PRK07030 adenosylmethionine--8 51.0 12 0.00032 17.9 2.3 12 312-323 367-378 (467)
246 TIGR00495 crvDNA_42K DNA-bindi 50.6 11 0.00027 18.3 2.0 104 218-323 222-342 (407)
247 PRK12403 putative aminotransfe 50.5 16 0.00041 17.2 2.9 12 312-323 373-384 (460)
248 PRK06541 hypothetical protein; 50.5 14 0.00035 17.7 2.5 12 312-323 370-381 (460)
249 PRK04804 minC septum formation 50.2 20 0.00051 16.6 4.1 48 292-342 113-169 (220)
250 PRK08555 consensus 50.1 14 0.00035 17.7 2.4 13 224-236 224-236 (443)
251 TIGR00308 TRM1 N2,N2-dimethylg 49.0 11 0.00028 18.2 1.8 37 9-47 139-178 (462)
252 TIGR00417 speE spermidine synt 48.9 21 0.00054 16.5 9.1 108 16-158 127-244 (284)
253 PRK07660 consensus 48.7 14 0.00035 17.6 2.3 22 86-107 98-119 (283)
254 KOG1401 consensus 48.5 10 0.00027 18.4 1.7 27 210-236 193-220 (433)
255 PRK02627 acetylornithine amino 48.2 15 0.00038 17.4 2.4 13 312-324 329-341 (398)
256 PRK05808 3-hydroxybutyryl-CoA 47.5 19 0.00049 16.8 2.9 31 86-116 98-128 (282)
257 PRK07323 consensus 47.2 11 0.00029 18.2 1.6 12 224-235 226-237 (443)
258 COG4992 ArgD Ornithine/acetylo 47.2 17 0.00042 17.1 2.5 13 312-324 329-341 (404)
259 PRK13360 omega amino acid--pyr 46.8 16 0.0004 17.3 2.3 11 225-235 217-227 (441)
260 TIGR02400 trehalose_OtsA alpha 46.8 23 0.00058 16.3 6.9 73 77-153 119-193 (476)
261 PRK05630 adenosylmethionine--8 46.8 19 0.00048 16.8 2.7 13 311-323 353-365 (423)
262 cd03147 GATase1_Ydr533c_like T 46.5 14 0.00036 17.6 2.0 46 293-338 182-227 (231)
263 COG1250 FadB 3-hydroxyacyl-CoA 46.1 23 0.0006 16.2 3.5 34 85-118 97-130 (307)
264 KOG1227 consensus 45.9 20 0.00052 16.6 2.8 80 213-293 185-271 (351)
265 PRK07495 4-aminobutyrate amino 45.9 19 0.00049 16.8 2.7 24 212-235 183-209 (422)
266 PRK11522 putrescine--2-oxoglut 45.8 20 0.00051 16.6 2.8 12 30-41 38-49 (468)
267 PRK08360 4-aminobutyrate amino 45.7 21 0.00054 16.5 2.9 12 312-323 349-360 (443)
268 COG4627 Uncharacterized protei 45.4 17 0.00044 17.1 2.4 19 86-104 66-84 (185)
269 PRK06130 3-hydroxybutyryl-CoA 45.2 24 0.00061 16.2 3.2 34 286-319 257-292 (310)
270 PRK06149 hypothetical protein; 45.0 17 0.00042 17.1 2.2 37 204-244 623-660 (972)
271 PRK12381 bifunctional succinyl 45.0 13 0.00034 17.7 1.8 12 312-323 328-339 (406)
272 PRK04004 translation initiatio 45.0 24 0.00062 16.1 3.6 79 289-373 483-569 (592)
273 PRK01278 argD bifunctional N-s 44.8 14 0.00036 17.6 1.8 12 224-235 177-188 (389)
274 PRK06062 hypothetical protein; 44.7 15 0.00038 17.4 2.0 24 212-235 185-210 (434)
275 PRK07483 hypothetical protein; 44.6 17 0.00043 17.1 2.2 12 312-323 350-361 (443)
276 PRK07986 adenosylmethionine--8 43.4 24 0.00062 16.1 2.9 14 310-323 353-366 (428)
277 COG1978 Uncharacterized protei 43.2 26 0.00066 16.0 3.3 15 204-218 133-147 (152)
278 PRK08466 consensus 43.1 23 0.00059 16.3 2.7 13 311-323 355-367 (430)
279 PRK06129 3-hydroxyacyl-CoA deh 42.8 26 0.00067 15.9 3.1 23 85-107 97-119 (308)
280 PRK06082 4-aminobutyrate amino 42.4 19 0.00049 16.8 2.2 12 312-323 375-386 (460)
281 PRK00129 upp uracil phosphorib 42.3 8.6 0.00022 18.9 0.4 57 206-262 107-170 (208)
282 pfam08704 GCD14 tRNA methyltra 42.1 27 0.00069 15.9 8.0 130 204-348 81-227 (309)
283 PRK06173 adenosylmethionine--8 40.7 24 0.00061 16.2 2.5 13 311-323 356-368 (429)
284 pfam02737 3HCDH_N 3-hydroxyacy 40.5 12 0.0003 18.1 0.9 119 233-351 6-139 (180)
285 pfam11899 DUF3419 Protein of u 40.4 29 0.00073 15.7 5.3 25 23-47 19-45 (376)
286 pfam00202 Aminotran_3 Aminotra 40.4 21 0.00054 16.5 2.2 33 222-267 177-209 (338)
287 PRK09545 znuA high-affinity zi 40.0 29 0.00074 15.7 4.1 48 221-268 248-303 (308)
288 KOG1099 consensus 39.0 30 0.00077 15.6 5.4 62 21-103 96-160 (294)
289 PRK11361 acetoacetate metaboli 38.6 28 0.00071 15.8 2.6 47 1-47 1-56 (457)
290 KOG0458 consensus 38.6 17 0.00043 17.1 1.5 28 291-318 424-451 (603)
291 pfam11793 FANCL_C FANCL C-term 38.1 15 0.00037 17.5 1.1 31 20-50 28-61 (70)
292 TIGR00459 aspS_bact aspartyl-t 38.0 31 0.0008 15.5 2.9 42 203-245 410-455 (653)
293 COG0270 Dcm Site-specific DNA 37.8 31 0.0008 15.5 5.3 29 21-49 48-77 (328)
294 TIGR00021 rpiA ribose 5-phosph 37.7 12 0.0003 18.1 0.5 48 213-267 103-157 (236)
295 PRK07678 aminotransferase; Val 37.5 32 0.00081 15.4 2.7 12 312-323 365-376 (451)
296 PRK07480 putative aminotransfe 37.2 23 0.00059 16.3 2.0 11 312-322 372-382 (459)
297 pfam01234 NNMT_PNMT_TEMT NNMT/ 37.0 32 0.00082 15.4 4.0 58 89-160 43-104 (261)
298 pfam03269 DUF268 Caenorhabditi 36.8 33 0.00083 15.4 4.4 99 19-136 41-151 (177)
299 PRK08117 4-aminobutyrate amino 36.3 28 0.00072 15.7 2.3 10 226-235 209-218 (429)
300 pfam01202 SKI Shikimate kinase 36.2 27 0.00069 15.8 2.2 49 82-135 45-94 (158)
301 PRK07819 3-hydroxybutyryl-CoA 35.9 6.4 0.00016 19.6 -1.0 11 290-300 263-273 (284)
302 PRK07894 consensus 35.5 30 0.00077 15.6 2.3 11 313-323 361-371 (430)
303 PRK12458 glutathione synthetas 35.4 34 0.00088 15.2 3.7 59 200-267 134-204 (349)
304 COG1568 Predicted methyltransf 35.3 14 0.00035 17.7 0.6 58 208-268 134-198 (354)
305 PRK06917 hypothetical protein; 34.6 33 0.00085 15.3 2.5 14 311-324 349-362 (447)
306 KOG4058 consensus 34.5 36 0.00091 15.1 4.9 126 213-355 61-197 (199)
307 PRK05093 argD bifunctional N-s 34.3 31 0.00079 15.5 2.2 13 311-323 328-340 (403)
308 cd00610 OAT_like Acetyl ornith 34.2 26 0.00067 15.9 1.9 12 312-323 338-349 (413)
309 TIGR03372 putres_am_tran putre 34.0 36 0.00092 15.1 2.6 12 312-323 373-384 (442)
310 PRK08088 4-aminobutyrate amino 33.8 31 0.0008 15.5 2.2 23 213-235 188-213 (426)
311 PRK04182 cytidylate kinase; Pr 33.7 37 0.00093 15.1 4.7 22 228-249 5-29 (178)
312 pfam00988 CPSase_sm_chain Carb 33.6 37 0.00094 15.1 2.7 10 42-51 39-48 (131)
313 cd07212 Pat_PNPLA9 Patatin-lik 33.6 16 0.0004 17.3 0.6 27 346-372 273-300 (312)
314 PRK05964 adenosylmethionine--8 33.3 31 0.00079 15.5 2.1 11 313-323 350-360 (421)
315 PRK06943 adenosylmethionine--8 30.4 41 0.0011 14.7 2.4 12 312-323 372-383 (452)
316 pfam06080 DUF938 Protein of un 29.6 43 0.0011 14.6 4.9 20 88-107 14-34 (201)
317 COG0635 HemN Coproporphyrinoge 29.5 21 0.00055 16.5 0.8 45 77-121 63-116 (416)
318 PRK10941 putative transcriptio 29.2 5.9 0.00015 19.9 -2.1 59 203-264 116-177 (269)
319 TIGR01355 cyt_deam_dimer cytid 28.9 25 0.00062 16.1 1.0 60 25-97 109-175 (311)
320 PRK08593 4-aminobutyrate amino 28.9 44 0.0011 14.6 2.3 11 312-322 355-365 (448)
321 PRK07481 hypothetical protein; 28.5 41 0.0011 14.7 2.1 24 212-235 200-225 (448)
322 pfam06460 NSP13 Coronavirus NS 28.4 45 0.0011 14.5 4.5 88 14-125 97-190 (300)
323 KOG1500 consensus 28.0 46 0.0012 14.5 6.6 91 220-313 174-286 (517)
324 cd05006 SIS_GmhA Phosphoheptos 28.0 46 0.0012 14.5 4.3 44 209-253 87-136 (177)
325 TIGR00652 DapF diaminopimelate 27.8 28 0.00071 15.8 1.1 41 203-243 195-246 (294)
326 KOG1540 consensus 27.1 47 0.0012 14.4 6.0 47 221-267 98-152 (296)
327 pfam03848 TehB Tellurite resis 27.1 47 0.0012 14.4 5.9 47 223-269 30-76 (192)
328 COG2519 GCD14 tRNA(1-methylade 26.8 48 0.0012 14.3 7.5 53 216-268 87-142 (256)
329 COG0850 MinC Septum formation 26.7 23 0.00058 16.3 0.5 42 291-332 111-161 (219)
330 PRK10037 cell division protein 26.6 48 0.0012 14.3 3.1 57 207-267 100-159 (250)
331 PRK09792 PLP-dependent GABA am 26.6 47 0.0012 14.4 2.1 12 312-323 343-354 (421)
332 cd02020 CMPK Cytidine monophos 26.5 49 0.0012 14.3 3.4 23 227-249 3-28 (147)
333 PRK07482 hypothetical protein; 26.2 49 0.0013 14.3 2.1 12 312-323 373-384 (461)
334 COG1641 Uncharacterized conser 26.2 48 0.0012 14.3 2.1 38 252-290 251-288 (387)
335 PRK12389 glutamate-1-semialdeh 26.1 48 0.0012 14.3 2.1 24 212-235 189-213 (429)
336 PRK06058 4-aminobutyrate amino 26.1 49 0.0013 14.3 2.1 13 223-235 223-235 (446)
337 PRK04870 histidinol-phosphate 25.9 50 0.0013 14.2 5.1 46 209-269 232-277 (356)
338 PRK07309 aromatic amino acid a 25.5 51 0.0013 14.2 5.1 13 38-50 31-43 (390)
339 cd03141 GATase1_Hsp31_like Typ 25.5 48 0.0012 14.4 2.0 100 212-339 111-218 (221)
340 pfam09673 TrbC_Ftype Type-F co 24.9 52 0.0013 14.1 4.3 53 207-259 7-65 (113)
341 COG1744 Med Uncharacterized AB 24.0 54 0.0014 14.0 3.1 52 204-258 204-256 (345)
342 PRK02936 argD acetylornithine 23.8 48 0.0012 14.4 1.7 11 313-323 313-323 (377)
343 PRK10610 chemotaxis regulatory 23.4 56 0.0014 14.0 2.3 25 23-47 34-58 (129)
344 PRK06916 adenosylmethionine--8 23.4 56 0.0014 14.0 2.5 30 209-238 245-276 (462)
345 PRK13034 serine hydroxymethylt 23.3 56 0.0014 13.9 5.6 22 253-274 283-304 (422)
346 PRK07036 hypothetical protein; 23.0 38 0.00096 15.0 1.0 13 311-323 372-384 (466)
347 TIGR03201 dearomat_had 6-hydro 22.6 58 0.0015 13.9 6.0 44 218-263 161-208 (349)
348 TIGR00497 hsdM type I restrict 22.0 59 0.0015 13.8 2.6 68 199-266 199-273 (516)
349 KOG1269 consensus 21.9 49 0.0012 14.3 1.4 22 205-227 190-211 (364)
350 COG5256 TEF1 Translation elong 21.4 28 0.00072 15.8 0.1 29 287-316 247-275 (428)
351 TIGR00394 lac_pts_IIC PTS syst 21.4 51 0.0013 14.2 1.4 35 213-250 277-318 (430)
352 TIGR00010 TIGR00010 hydrolase, 21.4 61 0.0016 13.7 6.8 41 210-251 143-189 (269)
353 cd06353 PBP1_BmpA_Med_like Per 21.2 62 0.0016 13.7 3.8 86 206-308 165-251 (258)
354 cd02015 TPP_AHAS Thiamine pyro 21.0 62 0.0016 13.7 3.4 54 237-291 133-186 (186)
355 KOG1158 consensus 20.7 63 0.0016 13.6 4.2 14 339-352 519-533 (645)
356 TIGR03439 methyl_EasF probable 20.6 63 0.0016 13.6 6.3 63 204-266 54-125 (319)
357 pfam08192 Peptidase_S64 Peptid 20.6 38 0.00098 14.9 0.7 52 271-329 457-510 (644)
No 1
>PRK11524 putative methyltransferase; Provisional
Probab=100.00 E-value=0 Score=444.26 Aligned_cols=243 Identities=36% Similarity=0.590 Sum_probs=199.0
Q ss_pred HHCCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 53270851725998972841471189847787615587133367851300134435778989999988999999998639
Q gi|254780466|r 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97 (375)
Q Consensus 18 ~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK 97 (375)
+-.|+||+|||+++|+.|||+||||||||||||++.++. ++.+.| +.++|.+|+.+|+.||+||||
T Consensus 6 ~~~~kIy~gDcle~lk~lpd~SIDLIiTDPPYn~~k~y~----------~~~d~~----~~~~y~~~~~~~l~e~~RvLk 71 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFD----------GLIEKW----KEDLFIDWLYEVIDECHRVLK 71 (284)
T ss_pred CCCCEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCCCC----------CCCCCC----CHHHHHHHHHHHHHHHHHHHC
T ss_conf 899989953189998538557738799899998887578----------746777----989999999999999999834
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCC---
Q ss_conf 68729998346888999987640578601246873156777757751765402132210056666502341001123---
Q gi|254780466|r 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--- 174 (375)
Q Consensus 98 ~~Gsi~v~~~~~~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~~~~k~y~fny~~~k~~--- 174 (375)
++|++||+++.+.+..+...+++ +|.+++.|||.|.++.+. ..++|.+.||.++|+.|+.+ .|+||.+.+...
T Consensus 72 ~~Gsi~i~~~~~~~~~~~~~~~~-~f~~~~~iiW~~~~~~~~-~~~~~~~~~e~il~~~k~~~--~~~~n~~~i~~~~k~ 147 (284)
T PRK11524 72 KQGTMYIMNSTENMPYIDLYCRK-LFTIKSRIVWSYDSSGVQ-AKKYFGSMYEPILMMVKDAK--NYTFNGDAILVEAKT 147 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHC-CCCEEEEEEEEECCCCCC-CCCCCCCCCCEEEEEEECCC--CCCCCHHHEEEECCC
T ss_conf 05745996285525289999960-650002688972388864-13557776550799995586--662054782430345
Q ss_pred -----------------CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHH
Q ss_conf -----------------798010465422102585414577875336877818999999985289988899868885179
Q gi|254780466|r 175 -----------------NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237 (375)
Q Consensus 175 -----------------n~~~~~~s~w~~pi~~g~er~k~~~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT 237 (375)
+..+.+.++|.+|-... + ....+.||||||++|++|||+++|++||+|||||||||||
T Consensus 148 ~~~~~~~~~~k~~~~~~~~~k~~~~vw~~~~~~~----~-~~~~~~HPt~kP~~L~e~lI~~~S~egDlVLDPF~GSGTT 222 (284)
T PRK11524 148 GAKRALIDYRKNPPQPYNHQKVPGNVWDFPRVRY----L-MDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTT 222 (284)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC----C-CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf 5423455434578766667778886687545442----6-6656688987929999999997488999899579888689
Q ss_pred HHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
Q ss_conf 9999980981699972899999999999630568765630244433
Q gi|254780466|r 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283 (375)
Q Consensus 238 ~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~ 283 (375)
++||++|||+|||||++++|+++|++||++++.+..++|......+
T Consensus 223 ~~aA~~lgR~~IGiEi~~eY~~iA~~Ri~~~~~~~~~~~~~~~~~~ 268 (284)
T PRK11524 223 GAVAKASGRKFIGIEINEEYIKMGLRRLDVASHYSAEELAKVKKRK 268 (284)
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 9999982995899968999999999998735346588999887155
No 2
>PRK13699 putative methylase; Provisional
Probab=100.00 E-value=0 Score=401.26 Aligned_cols=214 Identities=25% Similarity=0.386 Sum_probs=172.0
Q ss_pred CCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 27085172599897284147118984778761558713336785130013443577898999998899999999863968
Q gi|254780466|r 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99 (375)
Q Consensus 20 ~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~ 99 (375)
+||||+|||+++|++|||+|||||||||||+++...... . ....+.+++|+..|+.|++||||++
T Consensus 1 ~nkii~GDcle~l~~lpd~SVDliiTDPPY~~g~~~~~~---~------------~~~~d~~~ew~~~~~~e~~Rvlk~~ 65 (227)
T PRK13699 1 MSRFILGNCVDVMARFPDNAVDFILTDPPYLVGFRDRQG---R------------TIAGDKTDEWLQPACNEMYRVLKKD 65 (227)
T ss_pred CCCEEHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC---C------------CCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 984433019999952888772979989899889878899---7------------4457620899999999999995688
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCCEE
Q ss_conf 72999834688899998764057860124687315677775775176540213221005666650234100112379801
Q gi|254780466|r 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179 (375)
Q Consensus 100 Gsi~v~~~~~~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~~~~k~y~fny~~~k~~n~~~~ 179 (375)
|.++++++|+.+.+...++++.||.+++.+||.|+... .+.++...||.+++++|++.... . ..
T Consensus 66 g~~~~~~~~~~~~~~~~~~~~~gf~~~~~~vw~k~~~~---~~~~~~~~~e~~~~~~kg~~~~~--~-----~~------ 129 (227)
T PRK13699 66 ALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTS---KAAYVGYRHECAYILAKGRPALP--Q-----NP------ 129 (227)
T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCC---CCCCCCCCCEEEEEEECCCCCCC--C-----CC------
T ss_conf 16999933100469999999748866164784267788---76547764306899877986788--8-----87------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHH
Q ss_conf 04654221025854145778753368778189999999852899888998688851799999980981699972899999
Q gi|254780466|r 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259 (375)
Q Consensus 180 ~~s~w~~pi~~g~er~k~~~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~ 259 (375)
+..++. | ...+++.||||||++|++|+|+++|++||+|||||||||||++||+++||+|||||++++|++
T Consensus 130 ~~~v~~---~-------~~~~~~~HPtqKPv~L~e~lI~~~S~~gdlVLDPF~GSGTT~vAA~~lgR~fIGiEi~~~Y~~ 199 (227)
T PRK13699 130 LPDVLG---W-------KYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHR 199 (227)
T ss_pred CCCCCC---C-------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 887551---3-------578998899869299999999955999999997799875899999981994899968999999
Q ss_pred HHHHHHHHCCCCCHH
Q ss_conf 999999630568765
Q gi|254780466|r 260 IATKRIASVQPLGNI 274 (375)
Q Consensus 260 ~a~~Rl~~~~~~~~~ 274 (375)
+|.+||++++....+
T Consensus 200 ia~~Rl~~~~~~~~~ 214 (227)
T PRK13699 200 AGQQRLAAVQRAMQQ 214 (227)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999998850
No 3
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=359.21 Aligned_cols=284 Identities=37% Similarity=0.556 Sum_probs=250.8
Q ss_pred CHHHHCCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHH-HHHHHHHHH
Q ss_conf 3355327085172599897284147118984778761558713336785130013443577898999998-899999999
Q gi|254780466|r 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF-TRAWLLACR 93 (375)
Q Consensus 15 ~~~~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f-~~~wl~e~~ 93 (375)
-.....+++++|||++.|+.+|++|||+++|||||+++..+.+.....+..+...+ |+ +..+|..| ...|+.+++
T Consensus 11 ~~~~~~~~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~ 86 (302)
T COG0863 11 IWIDELSKIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDG-WD---SRGIYLKFILLQWLAEQK 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHCCCCCCCHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHH
T ss_conf 44554445557678788753722258767659973443322332201224566532-57---788887555689998755
Q ss_pred HHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCEECCCCCC
Q ss_conf 86396872999834688899998764057860124687315677775775176540213221-00566665023410011
Q gi|254780466|r 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALK 172 (375)
Q Consensus 94 RvLK~~Gsi~v~~~~~~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~-~K~~~~k~y~fny~~~k 172 (375)
|+|+++|++||+++|+.++++..++++.||++++.|||.|.+++++..+.++...++.+.|. .+..+...+.+++....
T Consensus 87 rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~~~iiw~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (302)
T COG0863 87 RVLKPGGSLYVIDPFSNLARIEDIAKKLGFEILGKIIWKKPSPRNSRIAKYLLFDYEPLIWANNKSDKLNVDKFKEDIVL 166 (302)
T ss_pred HEECCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCC
T ss_conf 31525770799538755348999999759736502889746886067778875010556664046421011103531223
Q ss_pred CCCCCEEECCCCCC----CCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCE
Q ss_conf 23798010465422----10258541457-78753368778189999999852899888998688851799999980981
Q gi|254780466|r 173 AANEDVQMRSDWLI----PICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247 (375)
Q Consensus 173 ~~n~~~~~~s~w~~----pi~~g~er~k~-~~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~ 247 (375)
....+.++++.|.. +.+.|.++... ..+.+.||||||++|++|+|+++|++||+|||||+|||||++||+++||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~ 246 (302)
T COG0863 167 DPFEDLRIREPYNKLIRLPDKKGNWSNPIDSYGKKLHPAQKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRR 246 (302)
T ss_pred CCCCCHHHCCCHHHHCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCC
T ss_conf 43300331443011103655456500466544445787415588999999955887778874176887199999981141
Q ss_pred EEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 69997289999999999963056876563024443337755234698828658776
Q gi|254780466|r 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303 (375)
Q Consensus 248 ~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~rvpfg~lie~g~l~~g~ 303 (375)
|||+|++++|++++.+|+....+.....+......+...++++..+++.+ +..++
T Consensus 247 ~ig~e~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 301 (302)
T COG0863 247 FIGIEINPEYVEVALKRLQEGLNRIPILIKNRVEERGSFVIESFYLEEGV-IEKHE 301 (302)
T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHEECHHHHHHHH-HHCCC
T ss_conf 34352348899999999986500005654214443102000000013331-22067
No 4
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=100.00 E-value=0 Score=349.09 Aligned_cols=208 Identities=45% Similarity=0.786 Sum_probs=162.6
Q ss_pred CCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 11898477876155871333678513001344357789899999889999999986396872999834688899998764
Q gi|254780466|r 40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119 (375)
Q Consensus 40 VDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~~~l~ 119 (375)
||||+||||||++.++. .|+...+.++|++|+..|+.+|+|+||++|++|++++++....+..++.
T Consensus 1 IDli~tdPPY~~~~~~~--------------~~~~~~~~~~y~~~~~~~~~~~~rvLk~~G~~~~~~~~~~~~~~~~~~~ 66 (221)
T pfam01555 1 VDLIVTDPPYNLGKDYG--------------QWDDKDSYEEYLEWLEEWLKEVRRVLKPGGSIFINIGDKYIKSLKALAL 66 (221)
T ss_pred CEEEEECCCCCCCCCCC--------------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 91999899997777566--------------2678889999999999999999998268865999767175799999999
Q ss_pred HC--CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEC-----------CCCCC
Q ss_conf 05--786012468731567777577517654021322100566665023410011237980104-----------65422
Q gi|254780466|r 120 NL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-----------SDWLI 186 (375)
Q Consensus 120 ~~--gf~~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~~~~k~y~fny~~~k~~n~~~~~~-----------s~w~~ 186 (375)
+. +|.+++.|||.|+++.|+..+.++.+.||.|+|++|+++. +.++++.++....+.... .++..
T Consensus 67 ~~~~~~~~~~~iiW~K~~~~~~~~~~~~~~~~E~I~~~~K~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (221)
T pfam01555 67 EILGIFKLLNDIIWRKPNGMPNSNGERFTPAHEYILWFSKTKKY--YTFNYDAIKVPYDEKDKLKKRGSEPNGKPIGDVW 144 (221)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCC--CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97453422336999716887876678646676689999889866--3680663056632222223014546687776656
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHH
Q ss_conf 10258541457787533687781899999998528998889986888517999999809816999728999999999
Q gi|254780466|r 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263 (375)
Q Consensus 187 pi~~g~er~k~~~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~ 263 (375)
.............+.+.||||||++|++|+|+++|++||+|||||||||||++||++|||+|||||++++|+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~hpt~kP~~L~~~~I~~~s~~gd~VlDpF~GSGTT~~Aa~~l~R~~iG~E~~~~y~~~a~~ 221 (221)
T pfam01555 145 DFPRVQPSEKESGGNGAHPTQKPEALLERLILASTNPGDIVLDPFAGSGTTGAAAKELGRNFIGIEIEEEYVEIAKE 221 (221)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHC
T ss_conf 56544433345666778899895999999999709997999989998279999999829959999589999999619
No 5
>COG2189 Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.3e-17 Score=127.26 Aligned_cols=230 Identities=28% Similarity=0.377 Sum_probs=141.3
Q ss_pred CCCCEEEECCCCCCCCCCCEECCC----------CCEE-EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 471189847787615587133367----------8513-00134435778989999988999999998639687299983
Q gi|254780466|r 38 KSVDLIFADPPYNLQLNGQLYRPD----------HSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106 (375)
Q Consensus 38 ~sVDlI~tDPPYni~~~~~~~~~~----------~s~~-~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~ 106 (375)
+..++|..||||++...+..+... .+.. +.+ -.++++ +...++.|+..+|..++.+|+++|.|||.+
T Consensus 121 ~~~~~i~~~~~~~~~s~~~~~~~~~k~~~~~~~~~~~~~~~~-~~~~~~-~~s~wl~fm~~rL~la~~ll~~dg~ifvs~ 198 (590)
T COG2189 121 NKNDIIYIDPLIALSSDYLRYLDKVKLIYIDPPYETGNNDRF-LYNDKF-NGSTWLSFMYNRLELAKKLLKDDGVIFVSI 198 (590)
T ss_pred CCCCEECCCCCEEECCHHHHHCCCCHHHHHCCHHHCCCHHHE-EECCCC-CCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 424200137731242102332563013331403323652330-305654-523588877788999999875552299230
Q ss_pred CHHHHHHHHHHHHHCCCC---EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCC-----------C-------CE
Q ss_conf 468889999876405786---01246873156777757751765402132210056666-----------5-------02
Q gi|254780466|r 107 SYHNIFRIGTMLQNLNFW---ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK-----------G-------YT 165 (375)
Q Consensus 107 ~~~~i~~i~~~l~~~gf~---~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~~~~k-----------~-------y~ 165 (375)
+.....++..+|+++ |. ++..++|.+++..+...+..+...||+++.++|..... . +.
T Consensus 199 DdnE~a~lkvl~Dei-Fg~~nfi~~~~w~~~~~~~~~~~~~~~~~~~y~~~y~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (590)
T COG2189 199 DDNEQAYLKVLMDEI-FGEENFITNIIWKKKNSSGSDSNKFVYIDHEYILVYAKNKYNRLELELEELDRQGNIYVIYDEN 277 (590)
T ss_pred CCCCCCCCEEEEECC-CCCCCCCEEEEECCCCCCCCCCCCCEEECEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 577541134775134-4566500014612445788875420030101367623312444430431125555444454434
Q ss_pred ------------E--------------CCCCCCCC----------------CCCEEEC---CC---------------CC
Q ss_conf ------------3--------------41001123----------------7980104---65---------------42
Q gi|254780466|r 166 ------------F--------------NYDALKAA----------------NEDVQMR---SD---------------WL 185 (375)
Q Consensus 166 ------------f--------------ny~~~k~~----------------n~~~~~~---s~---------------w~ 185 (375)
| +....... +....++ .. ..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (590)
T COG2189 278 DNYLKKNKLNEIFRKINFKNKIIGKPFNGSGRIWANFKKYLIKGLKADQNYNDNGYPRYYPFNLRYKKEKLDKKSKNRVI 357 (590)
T ss_pred CCHHHHCCCCHHCCCCCCCCCEECCCCCCCCCEEECCCHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 42554301000012467776333245477764010232101105554102445665223411211000134431575245
Q ss_pred CCCCC-CCC---CCCCC--------------------C------C-------CCCCCCC---------------------
Q ss_conf 21025-854---14577--------------------8------7-------5336877---------------------
Q gi|254780466|r 186 IPICS-GSE---RLRNK--------------------D------G-------EKLHPTQ--------------------- 207 (375)
Q Consensus 186 ~pi~~-g~e---r~k~~--------------------~------g-------~k~HPTq--------------------- 207 (375)
.+.|. |.. ..+.. . + ...--++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (590)
T COG2189 358 DPINGNGTTYGETARRKGYNDLKYIIKSIKEVKIEKNPKAVPYLNDRILDYFAGDFTTAHAVSYWNKEDKGNLGIDFKRG 437 (590)
T ss_pred EECCCCCCEEHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHCCCHHHHCCCCCCCCCC
T ss_conf 30357760207778631444322211010001032033223341124556554320202332001034421345543568
Q ss_pred CCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 818999999985289988899868885179999998098169997289999999999963056
Q gi|254780466|r 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270 (375)
Q Consensus 208 KP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~ 270 (375)
||+.|+.++|..+++++|+|||.|+|||||+++|.+++|.+||+|.-+-...++..|+..+--
T Consensus 438 k~~~l~~~~i~~~~~~~d~vld~~~gsgtt~~~~~~~~r~~ig~e~~~~~~~~~~~r~~~v~d 500 (590)
T COG2189 438 KPEALLQRIIKITTNKNDLVLDFFAGSGTTTAVAHKLNRKYIGIEQMEYIENIILERLKKVID 500 (590)
T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 868888889870788764332212488751177886546761712888887653456666677
No 6
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.79 E-value=2.7e-08 Score=70.54 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEE--EEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 368778189999999852-8998889986888517999999809816--99972899999999999630568
Q gi|254780466|r 203 LHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSF--IGIEMKQDYIDIATKRIASVQPL 271 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~--IGiE~~~~Y~~~a~~Rl~~~~~~ 271 (375)
.||+.--+.|..-++..+ -++|+.||||||||||.++.|..++.+. +|+|+|++.++.|+..++..-..
T Consensus 7 ~~~a~L~~~lAa~l~~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~ 78 (171)
T pfam01170 7 NGPAPLKATLARAMVNLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVG 78 (171)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 999898899999999985899999788689987899999999613589536758799999999999982899
No 7
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=2.9e-08 Score=70.39 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 368778189999999852-8998889986888517999999809816999728999999999996305
Q gi|254780466|r 203 LHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
.||+..|..|..-++..+ -.+|+.|||||||||+-++.|--+|-+.||+|++..-++-|+.-|+.-.
T Consensus 176 ~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~ 243 (347)
T COG1041 176 FRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYG 243 (347)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 67688598999998777416469876457678348888366427567603237999855664156627
No 8
>pfam05063 MT-A70 MT-A70. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA:m6A methyl-transferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs.
Probab=98.37 E-value=5.4e-06 Score=56.59 Aligned_cols=158 Identities=19% Similarity=0.324 Sum_probs=84.0
Q ss_pred CCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HHHH
Q ss_conf 118984778761558713336785130013443577898999998899999999863968729998346888999-9876
Q gi|254780466|r 40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI-GTML 118 (375)
Q Consensus 40 VDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i-~~~l 118 (375)
.|+|++|||......... .++...++. .+.++-.. .-+..++.+++.+|+.+........ ..+|
T Consensus 1 y~~I~aDPPW~~~~~~~~--------~~~~~~Y~t-m~~~~I~~------Lpv~~l~~~~~~lflW~Tn~~l~~~~~~~~ 65 (176)
T pfam05063 1 FDVIIADPPWRNKMVARL--------KKPELPYGT-MNDDELLA------LPIPELADKGSLIFLWCTNREGEEGGRECL 65 (176)
T ss_pred CCEEEECCCCCCCCCCCC--------CCCCCCCCC-CCHHHHHC------CCHHHHCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 998998199857675777--------766568886-79999974------986582568838999804712527899999
Q ss_pred HHCCCCEEEEEEEECCCCCC------CCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 40578601246873156777------757751765402132210056666502341001123798010465422102585
Q gi|254780466|r 119 QNLNFWILNDIVWRKSNPMP------NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192 (375)
Q Consensus 119 ~~~gf~~~n~IIW~K~n~~p------n~~g~r~~~~hE~iiw~~K~~~~k~y~fny~~~k~~n~~~~~~s~w~~pi~~g~ 192 (375)
+.-||.+..+++|.|+|.-- ...|..+.+.||.++.+.|++...... . ...+.. . ..+..+.
T Consensus 66 ~~WGf~~~t~~vWvK~~~~g~~~~~~~g~g~~~r~~~E~lLig~rG~~~~~~~----~-~~~~~~-~-~~~vi~~----- 133 (176)
T pfam05063 66 KKWGYRLVEEITWLKTNTLGEPIFPTLRSGHWLRHPKEHCLVGVKGNPKRSYG----G-DFINAN-I-DTDLIIS----- 133 (176)
T ss_pred HHCCCEEEEEEEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCC----C-CCCCCC-C-CCEEEEE-----
T ss_conf 86297487899998325789832346898743407850899998478877676----5-444567-5-5169995-----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 414577875336877818999999985289988899868885
Q gi|254780466|r 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234 (375)
Q Consensus 193 er~k~~~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF~GS 234 (375)
. ...| ++||.++. .+|...+ +|---|+-|+-.
T Consensus 134 -----~--~~~H-SrKP~~~~-~~ie~~~-~~~~~LElFAR~ 165 (176)
T pfam05063 134 -----P--EREH-SRKPDELF-EIIEHLC-PGLRKLELFARD 165 (176)
T ss_pred -----C--CCCC-CCCCHHHH-HHHHHHC-CCCCEEEEECCC
T ss_conf -----5--6667-88977899-9999868-999879887389
No 9
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.29 E-value=2.1e-06 Score=59.11 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=52.4
Q ss_pred CCCCCCCCCCC--CCHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCC-EEEEEEECHHHHHHHH
Q ss_conf 77875336877--8189999999852-89988899868885179999998098-1699972899999999
Q gi|254780466|r 197 NKDGEKLHPTQ--KPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIAT 262 (375)
Q Consensus 197 ~~~g~k~HPTq--KP~~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR-~~IGiE~~~~Y~~~a~ 262 (375)
..+|-+.|+|- -|.+..-+-+... -++|+.|||..+|-|-|++.|.+-|- +-|.+|.|+.-+++|.
T Consensus 105 EIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~ 174 (287)
T COG2521 105 EIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAK 174 (287)
T ss_pred EECCEEEECCCCCCCHHHHHHHHHEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCEEEEEC
T ss_conf 8815797513676807888756624443668784432467138999998758748999960877277413
No 10
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.24 E-value=2.7e-06 Score=58.44 Aligned_cols=99 Identities=22% Similarity=0.221 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHHHCC-------------
Q ss_conf 6542210258541457787-533687781899999998528-9988899868885179999998098-------------
Q gi|254780466|r 182 SDWLIPICSGSERLRNKDG-EKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRR------------- 246 (375)
Q Consensus 182 s~w~~pi~~g~er~k~~~g-~k~HPTqKP~~LleriI~~~S-~~gDiVLDPF~GSGTT~~aA~~lgR------------- 246 (375)
..+.+.+.+..+-+...-. .-.||++--+.|..=+++.+- .++.-.+||||||||-++-|-.+++
T Consensus 148 ~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~ 227 (381)
T COG0116 148 DTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFE 227 (381)
T ss_pred CEEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 77899996788632106561468887856999999999739999983416887734799999973445687633220045
Q ss_pred ----------------------------EEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCC
Q ss_conf ----------------------------1699972899999999999630568765630244
Q gi|254780466|r 247 ----------------------------SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280 (375)
Q Consensus 247 ----------------------------~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~ 280 (375)
.++|+|+|+..++.|+.-..+.--.+...+...+
T Consensus 228 ~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d 289 (381)
T COG0116 228 FWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQAD 289 (381)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 54321388899999999998651476665898748989999999989976988328999744
No 11
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.03 E-value=2e-05 Score=53.15 Aligned_cols=50 Identities=34% Similarity=0.387 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHCC------CCCCEEEECCCCCHHHHHHHHH--------HCCEEEEEEE
Q ss_conf 687781899999998528------9988899868885179999998--------0981699972
Q gi|254780466|r 204 HPTQKPEALLSRILVSST------KPGDIILDPFFGSGTSGAVAKK--------LRRSFIGIEM 253 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S------~~gDiVLDPF~GSGTT~~aA~~--------lgR~~IGiE~ 253 (375)
+.++--|.|..=||..+- ..+...+||||||||-++-|.. +.|...|+|.
T Consensus 169 g~APLKEnLAAalL~~sgW~~~~~~~~~pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~ 232 (716)
T PRK11783 169 GEAPLKENLAAAILLRSGWPEIAAQGGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSA 232 (716)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 8788766999999997499633457998134466684378999999984779886545456411
No 12
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.97 E-value=2.4e-05 Score=52.61 Aligned_cols=17 Identities=53% Similarity=0.802 Sum_probs=8.8
Q ss_pred CCCCCCCEEEECCCCCC
Q ss_conf 84147118984778761
Q gi|254780466|r 35 LPAKSVDLIFADPPYNL 51 (375)
Q Consensus 35 Lpd~sVDlI~tDPPYni 51 (375)
|++++||-|+|||||+.
T Consensus 260 l~~~~vdaIatDPPYGr 276 (347)
T COG1041 260 LRDNSVDAIATDPPYGR 276 (347)
T ss_pred CCCCCCCEEEECCCCCC
T ss_conf 88774235884699871
No 13
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=5.7e-05 Score=50.36 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
Q ss_conf 18999999985289-98889986888517999999809816999728999999999996305687656302444333775
Q gi|254780466|r 209 PEALLSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287 (375)
Q Consensus 209 P~~LleriI~~~S~-~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~r 287 (375)
-+.|+++.+...-. ++|.|+|-|||.||.+...-+-.++-+|+|++++.++.|++-.+.-.-. +..+.....++..+.
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~ 356 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHH
T ss_conf 9999999999974369977999355887013553124657999964899999999999973988-779995868888651
Q ss_pred CCHHHHHHCCCCCCCCEEECCCCC
Q ss_conf 523469882865877657668980
Q gi|254780466|r 288 VAFNLLVERGLIQPGQILTNAQGN 311 (375)
Q Consensus 288 vpfg~lie~g~l~~g~~L~~~~~~ 311 (375)
.. ....|..++.|..+.
T Consensus 357 ~~-------~~~~~d~VvvDPPR~ 373 (432)
T COG2265 357 WW-------EGYKPDVVVVDPPRA 373 (432)
T ss_pred HC-------CCCCCCEEEECCCCC
T ss_conf 00-------257999899899999
No 14
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=97.86 E-value=8.4e-05 Score=49.35 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=81.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-HHHH-CCEEEEEEECHHHHHHHHHHHHHCCC-----CCHHHHC
Q ss_conf 877818999999985289988899868885179999-9980-98169997289999999999963056-----8765630
Q gi|254780466|r 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKL-RRSFIGIEMKQDYIDIATKRIASVQP-----LGNIELT 277 (375)
Q Consensus 205 PTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~a-A~~l-gR~~IGiE~~~~Y~~~a~~Rl~~~~~-----~~~~~~~ 277 (375)
|-+=-|.|++.++....+..--|||-.+|||.-+++ |++. +-+.+|+|++++.+++|++-.+.... +....+.
T Consensus 69 PRpETE~Lve~~l~~~~~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~ 148 (251)
T TIGR03534 69 PRPDTEELVEAALERLKKGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFE 148 (251)
T ss_pred ECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 48833999999999731489869995567169999999967997899998987999999999998099826865131432
Q ss_pred CCCCC------CCCCCCCHHHHH--HCCC--CCCCCEEECCC----------CCEEEEECCCCCEEECCEECCHHHHHHH
Q ss_conf 24443------337755234698--8286--58776576689----------8069998159817869865319999987
Q gi|254780466|r 278 VLTGK------RTEPRVAFNLLV--ERGL--IQPGQILTNAQ----------GNISATVCADGTLISGTELGSIHRVGAK 337 (375)
Q Consensus 278 ~~~~~------~~~~rvpfg~li--e~g~--l~~g~~L~~~~----------~~~~a~v~~DG~l~~~~~~gsIh~i~a~ 337 (375)
..... -.+|-||-...- .... -+|-.-|+... .......+.+|.++. +.|.-|. -+.
T Consensus 149 ~~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~--Eig~~q~-~~v 225 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLL--EIGYDQG-EAV 225 (251)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--EECHHHH-HHH
T ss_conf 1568986689978998874566632860102672999717984699999999999985367988999--9683789-999
Q ss_pred HCCCCCCCCEEEEEEEEC
Q ss_conf 449810067114679759
Q gi|254780466|r 338 VSGSETCNGWNFWYFEKL 355 (375)
Q Consensus 338 ~~~~~~cNGw~fw~~~~~ 355 (375)
.+.. ..+||.-..+.++
T Consensus 226 ~~l~-~~~gf~~i~~~kD 242 (251)
T TIGR03534 226 RALF-EAAGFADVETRKD 242 (251)
T ss_pred HHHH-HHCCCCEEEEEEC
T ss_conf 9999-9689970688507
No 15
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.82 E-value=0.00034 Score=45.65 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHH
Q ss_conf 999998528998889986888517999999809-8169997289999999999963
Q gi|254780466|r 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 213 leriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
..+.|...+ +|--+|--|+=|||--+.|-.-| +.-..+|++..|++=|++-+.-
T Consensus 543 ~R~~i~~~a-~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~N~~l 597 (716)
T PRK11783 543 TRRMIGQMA-KGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL 597 (716)
T ss_pred HHHHHHHHH-CCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 999999970-7884643122256102133527961227862708799999999985
No 16
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=97.80 E-value=0.0001 Score=48.76 Aligned_cols=49 Identities=18% Similarity=0.336 Sum_probs=41.5
Q ss_pred HCCCCCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHH
Q ss_conf 528998889986888517999999809--8169997289999999999963
Q gi|254780466|r 219 SSTKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 219 ~~S~~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
...++|++|||+|||.|.-++.+-+.+ .+-+++|+||..++.+++.++.
T Consensus 96 ~~~~~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~l 146 (199)
T pfam02475 96 KLVKEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKL 146 (199)
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 744899889981688657789986407864899982899999999999998
No 17
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.78 E-value=0.00023 Score=46.71 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=76.8
Q ss_pred HHCC--CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHH--HHHHHHHHH
Q ss_conf 5327--085172599897284147118984778761558713336785130013443577898999998--899999999
Q gi|254780466|r 18 EWKD--KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF--TRAWLLACR 93 (375)
Q Consensus 18 ~~~n--kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f--~~~wl~e~~ 93 (375)
.|.. .++++|-.+..+..+-.++|+|+.-|||+-+... ..++..+ ...-|... ..+|+.-+.
T Consensus 92 ~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~--~~~~~~~------------~~Ar~e~~~~le~~i~~a~ 157 (248)
T COG4123 92 PLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSR--LNENPLR------------AIARHEITLDLEDLIRAAA 157 (248)
T ss_pred CCHHHEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC--CCCCHHH------------HHHHHHHCCCHHHHHHHHH
T ss_conf 6134016764308876542365654789959898787533--4867466------------5566322288999999999
Q ss_pred HHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEE-EEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 86396872999834688899998764057860124-687315677775775176540213221005666
Q gi|254780466|r 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND-IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161 (375)
Q Consensus 94 RvLK~~Gsi~v~~~~~~i~~i~~~l~~~gf~~~n~-IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~~~~ 161 (375)
++||++|.++++-.......+-.+|...+|..+.. .|.-+. -..+|-.++-+.|+.++
T Consensus 158 ~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p~~----------~k~A~~vLv~~~k~~~~ 216 (248)
T COG4123 158 KLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYPKI----------GKAANRVLVEAIKGGKS 216 (248)
T ss_pred HHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCC----------CCCCEEEEEEEECCCCC
T ss_conf 974679789999558888999999986698715899862788----------87516999998608887
No 18
>KOG2671 consensus
Probab=97.75 E-value=8.6e-06 Score=55.35 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=41.7
Q ss_pred CCCCCCHHH--HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHH
Q ss_conf 687781899--99999852899888998688851799999980981699972899999
Q gi|254780466|r 204 HPTQKPEAL--LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259 (375)
Q Consensus 204 HPTqKP~~L--leriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~ 259 (375)
-+|.+-.+| +.- =.+--.+||+|+|||+|||+-+++|-..|---||.|||=.-+.
T Consensus 188 GnTSmDAeLSli~A-N~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671 188 GNTSMDAELSLIMA-NQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred CCCCCCHHHHHHHH-HHHCCCCCCEEECCCCCCCCEEEEHHHHCCEEECCCCCHHEEE
T ss_conf 77665556788875-5530679988744765667426662230635641245312011
No 19
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.73 E-value=0.00019 Score=47.12 Aligned_cols=193 Identities=20% Similarity=0.251 Sum_probs=107.5
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCC-------CEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0851725998972841471189847787615587-------133367851300134435778989999988999999998
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~-------~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~R 94 (375)
+++++|-++. +..+++|+|+.-|||=-..+. ..+.|...-+ .-++=+.|.+..+.++.+
T Consensus 189 ~fi~sdwfe~---l~~~kFDlIVSNPPYI~~~e~~~L~~eV~~yEP~lAL~-----------ggeDGL~~Yr~Ia~~a~~ 254 (503)
T PRK01544 189 QIIHSNWFEN---IGKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALF-----------AEEDGLQAYFIIAENAKQ 254 (503)
T ss_pred EEEECCCHHC---CCCCCCCEEEECCCCCCHHHHHHCCHHHHCCCCHHHHC-----------CCCCCHHHHHHHHHHHHH
T ss_conf 9996553101---58887247983899887566665276653169378864-----------887628999999998898
Q ss_pred HCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCC
Q ss_conf 63968729998346888999987640578601246873156777757751765402132210056666502341001123
Q gi|254780466|r 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174 (375)
Q Consensus 95 vLK~~Gsi~v~~~~~~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~~~~k~y~fny~~~k~~ 174 (375)
.|||+|.+++-.+|..--.|..++.+.||.+.+.+ | ...| |..++-.+.-.-.+.|. ..--|.+
T Consensus 255 ~Lkp~G~l~lEIGy~Q~e~V~~IF~~~gy~~~~~~---k-----dl~~------~~rvi~~~~~~~~~~~~--~~~~~~~ 318 (503)
T PRK01544 255 FLKPNGKIILEIGFKQAEAVTQIFLDHGYNIDSIY---K-----DLQS------HNRVIEISPINLNRSYA--RRIGKSL 318 (503)
T ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHH---H-----HHCC------CCEEEEECCCCCCHHHH--HHHHHHH
T ss_conf 52889889999787868999999996594377776---6-----6505------76289962421156999--9860544
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHH--HHHHHCCEEEEEE
Q ss_conf 79801046542210258541457787533687781899999998528998889986888517999--9998098169997
Q gi|254780466|r 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA--VAKKLRRSFIGIE 252 (375)
Q Consensus 175 n~~~~~~s~w~~pi~~g~er~k~~~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~--aA~~lgR~~IGiE 252 (375)
. |. .+..-...-|.-|...-. ..+.+..++|.-=+|.|-.++ |+..-...|||||
T Consensus 319 ~---------------~~-------~~~~~~~~~~~~~~~~~~-~~~~k~kv~LEIGFG~Ge~L~~~A~~nP~~~fIG~E 375 (503)
T PRK01544 319 S---------------GV-------QQNLLDNELPKYLFSKEK-LVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVE 375 (503)
T ss_pred H---------------HH-------HHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 3---------------67-------888775153787730777-745567089995369879999999968988889994
Q ss_pred ECHHHHHHHHHHHHH
Q ss_conf 289999999999963
Q gi|254780466|r 253 MKQDYIDIATKRIAS 267 (375)
Q Consensus 253 ~~~~Y~~~a~~Rl~~ 267 (375)
--..-+--....+++
T Consensus 376 vy~nGva~ll~~i~~ 390 (503)
T PRK01544 376 VYLNGVANVLKLAGE 390 (503)
T ss_pred ECHHHHHHHHHHHHH
T ss_conf 065669999999998
No 20
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.72 E-value=5e-05 Score=50.69 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=60.7
Q ss_pred CCCCCCHHHHHHHHHHCC----------------------CCCCEEEECCCCCHHHHHH-HHH-HCCEEEEEEECHHHHH
Q ss_conf 687781899999998528----------------------9988899868885179999-998-0981699972899999
Q gi|254780466|r 204 HPTQKPEALLSRILVSST----------------------KPGDIILDPFFGSGTSGAV-AKK-LRRSFIGIEMKQDYID 259 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S----------------------~~gDiVLDPF~GSGTT~~a-A~~-lgR~~IGiE~~~~Y~~ 259 (375)
=|-+--|.|++.++.... .+.--|||--.|||--+++ |+. -+-+.+|+|++++.++
T Consensus 94 IPRPeTE~LVE~vL~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~ILDLGTGSGcIaISLa~e~p~a~v~avDIS~~AL~ 173 (503)
T PRK01544 94 IPRSDTEVLVDVVFQHSQCHSRESGNPEKKQLDSVSKNRNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIE 173 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 58996399999999986420222345310011000012345577278846667999999998678998999989899999
Q ss_pred HHHHHHHHCCC------CCHHHHCCCCCC------CCCCCCCHHHHHHCCCCCCCCEEECC
Q ss_conf 99999963056------876563024443------33775523469882865877657668
Q gi|254780466|r 260 IATKRIASVQP------LGNIELTVLTGK------RTEPRVAFNLLVERGLIQPGQILTNA 308 (375)
Q Consensus 260 ~a~~Rl~~~~~------~~~~~~~~~~~~------~~~~rvpfg~lie~g~l~~g~~L~~~ 308 (375)
+|++-.++... +...-++..... -.+|-|+-.. ...+.|..+.|+.
T Consensus 174 vAk~Na~~~~v~~ri~fi~sdwfe~l~~~kFDlIVSNPPYI~~~e---~~~L~~eV~~yEP 231 (503)
T PRK01544 174 VAKSNAIKYEVTDRIQIIHSNWFENIGKQKFDFIVSNPPYISHSE---KSEMAIETINYEP 231 (503)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCEEEECCCCCCHHH---HHHCCHHHHCCCC
T ss_conf 999999980882017999655310158887247983899887566---6652766531693
No 21
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=97.69 E-value=0.00017 Score=47.42 Aligned_cols=64 Identities=23% Similarity=0.457 Sum_probs=45.4
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs 101 (375)
.+.++|..++ .++++++|+|+|||||+..... ..+..++...++.++.|+++ +..
T Consensus 82 ~~~~~D~~~l--~~~~~~~d~Iv~nPPYG~r~~~----------------------~~~~~~ly~~~~~~~~~~~~-g~~ 136 (171)
T pfam01170 82 EFVQADAADL--PLLNGSVDTIVTDPPYGIRIGS----------------------KGALEKLYPAFLDEAKRVLR-GRL 136 (171)
T ss_pred EEEECCHHHC--CCCCCCCEEEEECCCCCCCCCC----------------------HHHHHHHHHHHHHHHHHHCC-CCE
T ss_conf 9997666538--7987883189988982011365----------------------45699999999999998689-978
Q ss_pred EEEECCHHH
Q ss_conf 999834688
Q gi|254780466|r 102 LWVIGSYHN 110 (375)
Q Consensus 102 i~v~~~~~~ 110 (375)
.|++.+...
T Consensus 137 ~~i~~~~~~ 145 (171)
T pfam01170 137 VFATPEKKD 145 (171)
T ss_pred EEEEECCHH
T ss_conf 999968689
No 22
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.64 E-value=0.00059 Score=44.17 Aligned_cols=112 Identities=23% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCCCC--CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 45778753368778--1899999998528998889986888517999999809-81699972899999999999630568
Q gi|254780466|r 195 LRNKDGEKLHPTQK--PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPL 271 (375)
Q Consensus 195 ~k~~~g~k~HPTqK--P~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~~ 271 (375)
++..++..+-||.= -++|+-.| ...-+|-.|||-|+|||+-|.-|..=| +..+-+|.+...+.+.++-++++...
T Consensus 24 L~~p~~~~~RPT~drvREalFn~L--~~~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~ 101 (198)
T PRK10909 24 LPVPDSPGLRPTTDRVRETLFNWL--APVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAG 101 (198)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHH--HHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 368999996878388999999875--764299879982777468899999879978999978999999999999984888
Q ss_pred -----CHHHHCCCCCCC--------CCC------CCCHHHHHHCCCCCCCCEEECC
Q ss_conf -----765630244433--------377------5523469882865877657668
Q gi|254780466|r 272 -----GNIELTVLTGKR--------TEP------RVAFNLLVERGLIQPGQILTNA 308 (375)
Q Consensus 272 -----~~~~~~~~~~~~--------~~~------rvpfg~lie~g~l~~g~~L~~~ 308 (375)
....+..+.... .+| ...+..|.+.++|.++.+++-.
T Consensus 102 ~~~ii~~da~~~L~~~~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 157 (198)
T PRK10909 102 NARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEQNGWLADDALIYVE 157 (198)
T ss_pred CEEEEEHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 67999556999862559952189989997655599999999988891899699999
No 23
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.60 E-value=0.00018 Score=47.39 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 899999998528998--88998688851799999980--981699972899999999999630
Q gi|254780466|r 210 EALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 210 ~~LleriI~~~S~~g--DiVLDPF~GSGTT~~aA~~l--gR~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
++|++..+.....+. --|||--+|||--+++..+. +-+.+++|++++.+++|++-.+..
T Consensus 106 eeLv~~~l~~~~~~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~ 168 (284)
T TIGR03533 106 AELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH 168 (284)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 999999999984236777155521680799999998789987999989999999999999860
No 24
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.59 E-value=0.00036 Score=45.49 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 68778189999999852899888998688851799999980--9816999728999999999996305
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l--gR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
=|=+--|.|++.++.......--|||-..|||.-+++-.+. +-+.+|+|++++.+++|++-.++..
T Consensus 90 IPRPETE~LVe~~l~~~~~~~~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~~~~ 157 (277)
T PRK09328 90 IPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQHLA 157 (277)
T ss_pred EECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 40881799999999964537881899545569999999986779899996489999999999999809
No 25
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=97.59 E-value=0.00013 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=13.3
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 0851725998972841471189847787
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPY 49 (375)
+++++|.++ .++++++|+|++-|||
T Consensus 84 ~v~~~D~~~---~~~~~~fD~IvsNPP~ 108 (170)
T pfam05175 84 EVFWSDLYS---AVEPGKFDLIISNPPF 108 (170)
T ss_pred EEEECCCCC---CCCCCCEEEEEECCCC
T ss_conf 999744666---5778866089989772
No 26
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=97.58 E-value=0.00036 Score=45.48 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHH
Q ss_conf 68778189999999852899888998688851799999980981699972899999999999
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl 265 (375)
+|.| .+.|...++......++-|+|-|||+||-+...-+..++-+|+|++++.++.|+.-.
T Consensus 179 N~~~-~~~l~~~a~~~~~~~~~~vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~~Na 239 (353)
T pfam05958 179 NAAV-NIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNI 239 (353)
T ss_pred CHHH-HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHH
T ss_conf 9899-999999999986268995899846888888999864787999962599999999989
No 27
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.52 E-value=0.00047 Score=44.80 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 1899999998528998889986888517999999809816999728999999999996
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
-+.|++.++......+.-|||-|||+||-+...-+...+-+|+|++++.++.|++-.+
T Consensus 193 ~e~l~~~a~~~~~~~~~~vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~aV~~A~~NA~ 250 (363)
T PRK05031 193 NEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIA 250 (363)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHH
T ss_conf 9999999999761389828986058664269988626879999538999999999999
No 28
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.52 E-value=0.00012 Score=48.31 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 877818999999985289--9888998688851799999980--9816999728999999999996305
Q gi|254780466|r 205 PTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 205 PTqKP~~LleriI~~~S~--~gDiVLDPF~GSGTT~~aA~~l--gR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
|-+--|.|.+.++...+. +..++||--+|||.-+++-.+. +-+.+|+|++++.+++|++-.++..
T Consensus 89 PRpETE~LVe~~l~~~~~~~~~~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na~~~~ 157 (285)
T PRK09329 89 PRQETEILVEKIIGYLQSHKEIQTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNAKSNG 157 (285)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHHHHCC
T ss_conf 596099999999999861877777888454179999999985898658803376999999999999729
No 29
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.52 E-value=0.00018 Score=47.32 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=43.3
Q ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHH
Q ss_conf 99985289988899868885179999998098-16999728999999999996
Q gi|254780466|r 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 215 riI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR-~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
+-+.-..+ |+-|||.|+=||.-.++|..-|= .-+++|+++.|++.|++-.+
T Consensus 210 ~~l~~~~~-GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~a~~N~~ 261 (393)
T COG1092 210 RALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE 261 (393)
T ss_pred HHHHHHCC-CCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99861316-87678864667699999986699714898265789999999998
No 30
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.51 E-value=0.00032 Score=45.84 Aligned_cols=51 Identities=24% Similarity=0.366 Sum_probs=43.1
Q ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHHH
Q ss_conf 9852899888998688851799999980981-69997289999999999963
Q gi|254780466|r 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 217 I~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~-~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+.....+|.+|||+|+|.|--.+.+.+.||. -+.+|+||..++..++-+.-
T Consensus 182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~L 233 (341)
T COG2520 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRL 233 (341)
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 9863069988998357865401246654786399994598999999999985
No 31
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=97.48 E-value=0.00042 Score=45.10 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=43.8
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs 101 (375)
.|.+||++.--..-.++++|.|++.|||+..........+..++..+ +..-.+..+| .|+..+...||++|.
T Consensus 108 ~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~---~~~~~~~~e~-----~Fiqh~l~~Lk~~Gr 179 (312)
T pfam02384 108 GIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAY---GVPPKSNADF-----AFLQHIIYHLSPNGR 179 (312)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCC---CCCCCCCHHH-----HHHHHHHHHCCCCCE
T ss_conf 52147765576766545511898378646676654321027211036---8788874429-----999999985699976
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780466|r 102 LWVI 105 (375)
Q Consensus 102 i~v~ 105 (375)
+.|+
T Consensus 180 aaiV 183 (312)
T pfam02384 180 AAVV 183 (312)
T ss_pred EEEE
T ss_conf 9999
No 32
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=97.43 E-value=0.00042 Score=45.10 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=18.2
Q ss_pred EECCCHHHHHHHCCC--CCCCEEEECCCCC
Q ss_conf 851725998972841--4711898477876
Q gi|254780466|r 23 IIKGNSISVLEKLPA--KSVDLIFADPPYN 50 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd--~sVDlI~tDPPYn 50 (375)
.++||+++.++++.. ..+|+||.|||++
T Consensus 53 fi~gD~f~~~~~l~~~~~~~DvVf~sPPWG 82 (165)
T pfam09445 53 FILGDWFELLAKLKFGKIPYDCVFLSPPWG 82 (165)
T ss_pred EEECCHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 997759999788763588755899779999
No 33
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=97.42 E-value=0.00077 Score=43.49 Aligned_cols=72 Identities=24% Similarity=0.272 Sum_probs=53.7
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 8753368778--1899999998528998889986888517999999809-8169997289999999999963056
Q gi|254780466|r 199 DGEKLHPTQK--PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQP 270 (375)
Q Consensus 199 ~g~k~HPTqK--P~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~ 270 (375)
++...-||.= -++|.-.|-....-+|-.|||.|+|||+-|.-|..-| .+.+.+|.|.+.++..++-++++..
T Consensus 17 ~~~~~RPT~~rvrEalFniL~~~~~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~ 91 (181)
T pfam03602 17 PGPGTRPTTDRVREALFNILAPYFELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGL 91 (181)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 999957684889999997501345548987998278726989999976998899996999999999999998589
No 34
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=97.40 E-value=0.00058 Score=44.24 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 189999999852-89988899868885179999998098169997289999999999963
Q gi|254780466|r 209 PEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 209 P~~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
.+.|.+..+... ..+++.|||-|||+||.+...-+..++-+|+|.++..++.|++..+.
T Consensus 279 ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~ 338 (440)
T PRK13168 279 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARR 338 (440)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 999999999985267898899862385621111353067688760579999999999997
No 35
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.0025 Score=40.42 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCCC--HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 457787533687781--89999999852-8998889986888517999999809-8169997289999999999963056
Q gi|254780466|r 195 LRNKDGEKLHPTQKP--EALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQP 270 (375)
Q Consensus 195 ~k~~~g~k~HPTqKP--~~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~ 270 (375)
++..++...-||.=- ++|... +.. --+|..|||.|+|||+-+.-|..=| .+.+.+|.|...+.+.++-++.+..
T Consensus 14 L~~p~~~~~RPT~drVREalFNi--l~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~ 91 (187)
T COG0742 14 LKTPDGPGTRPTTDRVREALFNI--LAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL 91 (187)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHH--CCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 25799998688716888999987--3434457988999468764768999857885699996598999999999998487
No 36
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.26 E-value=0.0019 Score=41.12 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=45.4
Q ss_pred HHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 899999998528-9988899868885179999998098169997289999999999963
Q gi|254780466|r 210 EALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 210 ~~LleriI~~~S-~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+.|.+.++.... .+++.|||-|||+||.+...-+...+-+|+|.+++.++.|++-.+.
T Consensus 219 ~~L~~~~~~~~~~~~~~~vlDlycG~G~~sl~lA~~~~~V~gvE~~~~av~~A~~na~~ 277 (375)
T PRK03522 219 AQLYATARDWVRELPPKSMWDLFCGVGGFGLHCATPDMQLTGIEISAEAIACAKQSAAE 277 (375)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHH
T ss_conf 99999999986315897899965785388898764178899998459999999999998
No 37
>KOG2098 consensus
Probab=97.24 E-value=0.00062 Score=44.04 Aligned_cols=98 Identities=18% Similarity=0.363 Sum_probs=49.7
Q ss_pred CCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH-H
Q ss_conf 471189847787615587133367851300134435778989999988999999998639687299983468889999-8
Q gi|254780466|r 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG-T 116 (375)
Q Consensus 38 ~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~-~ 116 (375)
+++-.|.+|||++|.+.- |=++ ++|+ +....--.+|-++|-||++..-+.+- +| .
T Consensus 388 GkFaVVmADPpWdIHMeL----PYGT----m~Dd---------------Emr~L~vp~LQddGlIFLWVTGRAmE-LGre 443 (591)
T KOG2098 388 GKFAVVMADPPWDIHMEL----PYGT----MTDD---------------EMRRLNVPVLQDDGLIFLWVTGRAME-LGRE 443 (591)
T ss_pred CEEEEEEECCCCCCEEEC----CCCC----CCHH---------------HHHCCCCCCCCCCCEEEEEECCHHHH-HHHH
T ss_conf 105799607974100226----7666----5657---------------76338985113586799997224888-7799
Q ss_pred HHHHCCCCEEEEEEEECCCCCCC----C-CCCCCCCCHHHHHHHHCCC
Q ss_conf 76405786012468731567777----5-7751765402132210056
Q gi|254780466|r 117 MLQNLNFWILNDIVWRKSNPMPN----F-RGRRFQNAHETLIWASPSP 159 (375)
Q Consensus 117 ~l~~~gf~~~n~IIW~K~n~~pn----~-~g~r~~~~hE~iiw~~K~~ 159 (375)
-|..-||...++|||.|+|-... + .|.-+.+.-|.++...|+.
T Consensus 444 cLnlWGY~rVdEiiWVKTNQLqRiIrTGRTGHWLNH~KEHcLVG~KGN 491 (591)
T KOG2098 444 CLNLWGYERVDEIIWVKTNQLQRIIRTGRTGHWLNHGKEHCLVGVKGN 491 (591)
T ss_pred HHHHHCHHHHHEEEEEEECHHHHHEECCCCCCCCCCCCCEEEEEECCC
T ss_conf 997644333003677860304451026766401026750067640468
No 38
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=97.19 E-value=0.0018 Score=41.21 Aligned_cols=63 Identities=32% Similarity=0.419 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 3687781899999998528998889986888517999999809-81699972899999999999630
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
.|||. .|+-+.+.....+|..|||-=+|||--++||.+|| .+-+|+|+|+..++.|++-++.-
T Consensus 143 ~H~TT---~lcl~~l~~~~~~~~~vlD~GcGSGILaIaA~klGa~~v~a~DiDp~Av~~a~eN~~~N 206 (294)
T pfam06325 143 THPTT---ALCLEALESLVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELN 206 (294)
T ss_pred CCHHH---HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf 77579---99999998650369867850565089999999759996899988899999999999976
No 39
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.17 E-value=0.0022 Score=40.68 Aligned_cols=62 Identities=27% Similarity=0.363 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHHH
Q ss_conf 36877818999999985289988899868885179999998098-169997289999999999963
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR-~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
.|||. .|+-+.+.....+|..|||-=+|||--++||.+||- +-+|+|+|+..++.|++-.+.
T Consensus 145 ~H~TT---~lcl~~l~~~~~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~l 207 (298)
T PRK00517 145 THPTT---RLCLEWLEKLVLPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAEL 207 (298)
T ss_pred CCHHH---HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 77479---9999999843546886887157706999999974998499998989999999999998
No 40
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.05 E-value=0.001 Score=42.78 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=38.8
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 70851725998972841471189847787615587133367851300134435778989999988999999998639687
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~G 100 (375)
-+|+++|.+..|+.. ...+|+||.||||.. ..|.+.+. +.....+|+++|
T Consensus 103 ~~ii~~da~~~L~~~-~~~fDlIF~DPPY~~---------------------------~~~~~~l~--~l~~~~~L~~~g 152 (198)
T PRK10909 103 ARVVNTNALSFLAQP-GTPHNVVFVDPPFRK---------------------------GLLEETIN--LLEQNGWLADDA 152 (198)
T ss_pred EEEEEHHHHHHHHCC-CCCEEEEEECCCCCC---------------------------CHHHHHHH--HHHHCCCCCCCC
T ss_conf 799955699986255-995218998999765---------------------------55999999--999888918996
Q ss_pred EEEEECC
Q ss_conf 2999834
Q gi|254780466|r 101 TLWVIGS 107 (375)
Q Consensus 101 si~v~~~ 107 (375)
-|++-.+
T Consensus 153 liiiE~~ 159 (198)
T PRK10909 153 LIYVESE 159 (198)
T ss_pred EEEEEEC
T ss_conf 9999954
No 41
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.001 Score=42.73 Aligned_cols=72 Identities=28% Similarity=0.452 Sum_probs=46.0
Q ss_pred CCCCCCCHH-HHCCCEECCCHHHHHHHCCCC-CCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 233324335-532708517259989728414-711898477876155871333678513001344357789899999889
Q gi|254780466|r 9 INENQNSIF-EWKDKIIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86 (375)
Q Consensus 9 ~~~~~~~~~-~~~nkI~~GDcl~~l~~Lpd~-sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~ 86 (375)
+.+|...+. .-..+++.+|....|+.+... ++|+||.||||+-++ + +....
T Consensus 82 l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l------------------~------~~~~~--- 134 (187)
T COG0742 82 LKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGL------------------L------DKELA--- 134 (187)
T ss_pred HHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCCCCCCH------------------H------HHHHH---
T ss_conf 99999984876125998400899987227788512899689975360------------------6------68999---
Q ss_pred HHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999986396872999834
Q gi|254780466|r 87 AWLLACRRVLKPNGTLWVIGS 107 (375)
Q Consensus 87 ~wl~e~~RvLK~~Gsi~v~~~ 107 (375)
..+.+-...|+++|.+++-.+
T Consensus 135 ~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 135 LLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHHHCCCCCCCCEEEEEEC
T ss_conf 988876587788968999827
No 42
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=96.95 E-value=0.0016 Score=41.50 Aligned_cols=61 Identities=30% Similarity=0.400 Sum_probs=43.2
Q ss_pred CCCCCC-HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH---------CCEEEEEEECHHHHHHHHHHHH
Q ss_conf 687781-89999999852899888998688851799999980---------9816999728999999999996
Q gi|254780466|r 204 HPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL---------RRSFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 204 HPTqKP-~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l---------gR~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
|-|+.+ ..|+-+++ ...+|+.|+||+||||..+++|.+. +-.+.|+|+++.-+.+|+-.+-
T Consensus 28 ffTPr~Vv~lmv~ll--~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~ 98 (312)
T pfam02384 28 FYTPREVSKLIVELL--EPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMI 98 (312)
T ss_pred ECCCHHHHHHHHHHH--CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 588789999999982--89999988216877337899999999984378556556368899899999999999
No 43
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0083 Score=37.22 Aligned_cols=61 Identities=28% Similarity=0.397 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHH
Q ss_conf 368778189999999852899888998688851799999980981-6999728999999999996
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~-~IGiE~~~~Y~~~a~~Rl~ 266 (375)
.|||. .|+-+.+...-.+|..|||-=||||--++||.+||-. -+|+|+||-.++.|++-..
T Consensus 145 ~HpTT---~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 145 THPTT---SLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred CCHHH---HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 78017---999999998605898799826781599999998198668997188899999999999
No 44
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.76 E-value=0.0026 Score=40.29 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 8999999985289--9888998688851799999980--9816999728999999999996305
Q gi|254780466|r 210 EALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 210 ~~LleriI~~~S~--~gDiVLDPF~GSGTT~~aA~~l--gR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
++|+...+..... +.--|||--+|||.-+++..+. .-..+++|++++.+++|++-++...
T Consensus 118 ~ELi~~~l~~~~~~~~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~~~~ 181 (307)
T PRK11805 118 AELIEDGFAPWLEDEQPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG 181 (307)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 9999999999733578872777427827999999987899889998589999999999999838
No 45
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0078 Score=37.39 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=51.3
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 6877818999999985289988899868885179999998098--16999728999999999996305
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR--SFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
-|..--+.|++.++.........|||-.+|||.-+++....+. +-+|+|+|++.+++|++-.....
T Consensus 91 iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~ 158 (280)
T COG2890 91 IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG 158 (280)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 88976799999999751115891899658831999999961898879999899999999999999828
No 46
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=96.68 E-value=0.0066 Score=37.83 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 899999998528998889986888517999999809-816999728999999999996305
Q gi|254780466|r 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 210 ~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
|+|.--++..---.|.-+||.|+|||+-|+=|..=| -..+-+|.|...+.+..+-|+.++
T Consensus 42 EslFNiv~~~~~i~~~~~LD~FAGsG~LG~EALSRgA~~~~f~E~d~~~~~~l~~N~~~L~ 102 (210)
T TIGR00095 42 ESLFNIVILRPEIVGAHFLDLFAGSGSLGLEALSRGAKSAVFVEQDKKVAQTLKENLSTLK 102 (210)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 6787699998763687278854064465376640141623787368679999999999988
No 47
>KOG2671 consensus
Probab=96.57 E-value=0.0027 Score=40.17 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=7.9
Q ss_pred CCEEEECCCCCH
Q ss_conf 888998688851
Q gi|254780466|r 224 GDIILDPFFGSG 235 (375)
Q Consensus 224 gDiVLDPF~GSG 235 (375)
+.||+||=-|--
T Consensus 286 DaIvcDPPYGVR 297 (421)
T KOG2671 286 DAIVCDPPYGVR 297 (421)
T ss_pred EEEEECCCCCHH
T ss_conf 378727981145
No 48
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=96.54 E-value=0.0022 Score=40.65 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=60.9
Q ss_pred CCCCCCCHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEEEEE-EECHHHHHHHHHHHHHCCCCC
Q ss_conf 368778189999999852-8998889986888517999999809816999-728999999999996305687
Q gi|254780466|r 203 LHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGI-EMKQDYIDIATKRIASVQPLG 272 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGi-E~~~~Y~~~a~~Rl~~~~~~~ 272 (375)
.+|...+..|..-++..+ ..+|+.++|||||+|..++-|-.+|-+-+|+ +++.....-+...++.....+
T Consensus 182 ~~p~~~~p~~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~ 253 (358)
T TIGR01177 182 FKPGSLDPKLARALVNLAGVKEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIED 253 (358)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCC
T ss_conf 256555546777776542024675100422266603323333211000244035676425211133305543
No 49
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=96.52 E-value=0.0061 Score=38.03 Aligned_cols=61 Identities=23% Similarity=0.370 Sum_probs=38.3
Q ss_pred HHCCCEECCCHHHHHHHCC--CCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5327085172599897284--14711898477876155871333678513001344357789899999889999999986
Q gi|254780466|r 18 EWKDKIIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95 (375)
Q Consensus 18 ~~~nkI~~GDcl~~l~~Lp--d~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~Rv 95 (375)
+..++++..|+...+..+. ..++|+||.||||.. ..|.+. .+.+. -..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~DPPY~~---------------------------~~~~~~-l~~l~-~~~~ 140 (181)
T pfam03602 90 GLEGAVLRMDAARALLRLAGKGPPFDLVFLDPPYAK---------------------------GLIEEA-LELLA-EKGW 140 (181)
T ss_pred CCCCEEEECCHHHHHHHHCCCCCCCCEEECCCCCCC---------------------------HHHHHH-HHHHH-HCCC
T ss_conf 899779981089999875335788876635997542---------------------------069999-99999-6666
Q ss_pred CCCCCEEEEECC
Q ss_conf 396872999834
Q gi|254780466|r 96 LKPNGTLWVIGS 107 (375)
Q Consensus 96 LK~~Gsi~v~~~ 107 (375)
|+++|-+++-.+
T Consensus 141 l~~~~iiiiE~~ 152 (181)
T pfam03602 141 LNPNALIVVETE 152 (181)
T ss_pred CCCCEEEEEEEC
T ss_conf 579809999966
No 50
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.46 E-value=0.0094 Score=36.88 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=75.8
Q ss_pred CCCCCCCHHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 3687781899999998528998--889986888517999999809-8169997289999999999963056876563024
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~g--DiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~ 279 (375)
.|||. .|+-..+...-.+| +.|+|-=||||--++||.+|| ..-+|||+||-.++.|++-.+.=+--+...+...
T Consensus 177 tH~TT---~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~ 253 (330)
T TIGR00406 177 THPTT---SLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLE 253 (330)
T ss_pred CCHHH---HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 74578---999998740147776654787126717899999975123112213772899999976874588645764320
Q ss_pred ---CCCCCCCCCCHHHHHHCCCC-CCCCEEECCCCCEEEEECCCCCEEECC
Q ss_conf ---44333775523469882865-877657668980699981598178698
Q gi|254780466|r 280 ---TGKRTEPRVAFNLLVERGLI-QPGQILTNAQGNISATVCADGTLISGT 326 (375)
Q Consensus 280 ---~~~~~~~rvpfg~lie~g~l-~~g~~L~~~~~~~~a~v~~DG~l~~~~ 326 (375)
+......--++.-.| .|+| .|=-.|+.. ..--+...|.++.-+
T Consensus 254 ~~vPe~~~~~e~~~DViV-ANiLA~vi~~L~p~---~~~L~~~~G~lilSG 300 (330)
T TIGR00406 254 NSVPELEQPIEGKADVIV-ANILAEVIKELYPQ---FSRLVKPGGHLILSG 300 (330)
T ss_pred CCCCCCCCCCCCCCCEEE-ECCHHHHHHHHHHH---HHHHCCCCCCEEEHH
T ss_conf 578753453225667578-80024578764135---513106899657413
No 51
>KOG2187 consensus
Probab=96.45 E-value=0.0031 Score=39.79 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCC--CCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHH
Q ss_conf 899999998528--9988899868885179999998098169997289999999999
Q gi|254780466|r 210 EALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264 (375)
Q Consensus 210 ~~LleriI~~~S--~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~R 264 (375)
.+.+++.|.-.. +.+-++||-+|||||-+++..+-=-+-||+|++++.++-|++-
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~n 424 (534)
T KOG2187 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKN 424 (534)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCEEHHHHCCCCCEEEEECCHHHCCHHHHC
T ss_conf 899999999970899884799863068840000102666121023384544435540
No 52
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=96.39 E-value=0.0028 Score=40.05 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=36.0
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs 101 (375)
+-++|||.+ |+ ++|+|+|++=++ |++ .++.+|. +-|+|++|||||+|.
T Consensus 109 ~f~~~dA~~-LP-F~D~sFD~~Tia--FGl------------------------RN~~d~~----~aL~E~~RVLKpgG~ 156 (242)
T TIGR01934 109 SFIEADAEA-LP-FEDNSFDAVTIA--FGL------------------------RNVTDIQ----KALREMYRVLKPGGR 156 (242)
T ss_pred HHEECHHHC-CC-CCCCCEEEEEEE--CCC------------------------CCCCCHH----HHHHHHHHCCCCCCE
T ss_conf 211000550-87-998624446640--255------------------------4746867----898773110188987
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780466|r 102 LWVI 105 (375)
Q Consensus 102 i~v~ 105 (375)
+.+.
T Consensus 157 l~iL 160 (242)
T TIGR01934 157 LVIL 160 (242)
T ss_pred EEEE
T ss_conf 9984
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.32 E-value=0.023 Score=34.49 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=49.6
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 899999998528998889986888517999999809816999728999999999996305
Q gi|254780466|r 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 210 ~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
..++.++=..-.-.|--|||-=||+|+++....+.|.+-+|+|+++..+++|++|....-
T Consensus 50 ~~~l~wl~~~~dl~G~rVLDaGCGtG~la~~LA~~Ga~V~avDiS~~mi~~A~~Ra~~~g 109 (230)
T PRK07580 50 DTVLSWLPADGDLTGLSILDAGCGTGSLSIPLARRGAKVVASDISPQMVEEARERAPEAG 109 (230)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 999997310599789989881878678799999779989998389999999997558627
No 54
>PRK03612 spermidine synthase; Provisional
Probab=96.21 E-value=0.021 Score=34.80 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=49.3
Q ss_pred CCCCHHHHCCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 32433553270851725998972841471189847787615587133367851300134435778989999988999999
Q gi|254780466|r 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91 (375)
Q Consensus 12 ~~~~~~~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e 91 (375)
|.++..|=+=+++++|....+++- +++.|+|+.|+|=-. +. ..-.-|++++...
T Consensus 343 n~~a~~DpRv~v~~~Da~~~l~~~-~~~yDvIi~D~pdP~----------~~---------------~~~~LYs~eFY~~ 396 (516)
T PRK03612 343 NGGALDDPRVTVVNDDAFNWLRKL-PETFDAIIVDLPDPS----------NP---------------ALGKLYSVEFYRL 396 (516)
T ss_pred HCCCCCCCCEEEEEHHHHHHHHHC-CCCCCEEEEECCCCC----------CC---------------CCCCCCCHHHHHH
T ss_conf 123234996489853789999868-887888998189979----------95---------------2246753999999
Q ss_pred HHHHCCCCCEEEEECCH-----HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 99863968729998346-----88899998764057860124687315677775
Q gi|254780466|r 92 CRRVLKPNGTLWVIGSY-----HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140 (375)
Q Consensus 92 ~~RvLK~~Gsi~v~~~~-----~~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~ 140 (375)
+++.|+++|.+-+...- +....+..-++..||. ++-+..-+|+|
T Consensus 397 ~~~~L~~~G~~v~qs~Sp~~~~~~f~~i~~T~~~~~~~-----~~~y~~~vpsf 445 (516)
T PRK03612 397 LKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGFA-----TTPYHVNVPSF 445 (516)
T ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC-----CCCCEECCCCC
T ss_conf 99844999589993689755220346899999983880-----41324558886
No 55
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.12 E-value=0.042 Score=32.95 Aligned_cols=51 Identities=22% Similarity=0.496 Sum_probs=41.8
Q ss_pred CCCCCCEEEECCCCCHHHH-HHHHHHCC--EEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 2899888998688851799-99998098--169997289999999999963056
Q gi|254780466|r 220 STKPGDIILDPFFGSGTSG-AVAKKLRR--SFIGIEMKQDYIDIATKRIASVQP 270 (375)
Q Consensus 220 ~S~~gDiVLDPF~GSGTT~-~aA~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~~ 270 (375)
...+|+.|||-=||||..+ ..|++.+. +-+|+|++++.++.|++|+.+...
T Consensus 48 ~~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~~ 101 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKGL 101 (239)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 789999898845776387999999729976799991988999999999997389
No 56
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=96.03 E-value=0.058 Score=32.08 Aligned_cols=90 Identities=24% Similarity=0.358 Sum_probs=61.5
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCC-------CCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0851725998972841471189847787615-------587133367851300134435778989999988999999998
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ-------LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~-------~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~R 94 (375)
+++++|.++ .++++++|+|++-|||=-. .....+.|...-+.| ++=+.|.+..+.++.+
T Consensus 140 ~~~~~d~~~---~~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg-----------~dGl~~~~~ii~~a~~ 205 (251)
T TIGR03534 140 RFLKSDWFE---PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAG-----------EDGLDFYRRIIAQAPR 205 (251)
T ss_pred EEEECCHHH---CCCCCCCCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCC-----------CCHHHHHHHHHHHHHH
T ss_conf 865131432---15689866899789988745666328601026729997179-----------8469999999999998
Q ss_pred HCCCCCEEEEECCHHHHHHHHHHHHHCCCCE
Q ss_conf 6396872999834688899998764057860
Q gi|254780466|r 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125 (375)
Q Consensus 95 vLK~~Gsi~v~~~~~~i~~i~~~l~~~gf~~ 125 (375)
.|+++|.+++-.++.....+..++.+.||..
T Consensus 206 ~L~~~G~l~~Eig~~q~~~v~~l~~~~gf~~ 236 (251)
T TIGR03534 206 YLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred HCCCCCEEEEEECHHHHHHHHHHHHHCCCCE
T ss_conf 5367988999968378999999999689970
No 57
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.02 E-value=0.0073 Score=37.53 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=24.7
Q ss_pred EEECCCCCHHHHHHH-HHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 998688851799999-98098169997289999999999963
Q gi|254780466|r 227 ILDPFFGSGTSGAVA-KKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 227 VLDPF~GSGTT~~aA-~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
|||.-+|+|...... +..+.+.+|+|++++.++.|+++..+
T Consensus 2 VLDiGcG~G~~~~~l~~~~~~~v~~iD~s~~~~~~a~~~~~~ 43 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA 43 (107)
T ss_pred EEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 999988879999999956898899998988899999998753
No 58
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.00 E-value=0.013 Score=36.02 Aligned_cols=125 Identities=15% Similarity=0.179 Sum_probs=78.7
Q ss_pred HHHHHHHHHHCC-CCCCEEEECCCCCHHHH-HHHHHHCCEEEEEEECHHHHHHHHHHHHHCC------------CCCHHH
Q ss_conf 899999998528-99888998688851799-9999809816999728999999999996305------------687656
Q gi|254780466|r 210 EALLSRILVSST-KPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ------------PLGNIE 275 (375)
Q Consensus 210 ~~LleriI~~~S-~~gDiVLDPF~GSGTT~-~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~------------~~~~~~ 275 (375)
.+-..+++.... +||.-|||-=||.|-++ ..|++.|-+-+|+++++..++.|.+|..... |+++..
T Consensus 38 ~e~~~~~l~~l~L~~~~kVLDvGCG~GG~a~~LA~~yg~~V~GiDls~~~~~~A~er~~~~~~v~f~~~d~~~~~f~d~s 117 (263)
T PTZ00098 38 IEATKKILSDIELDANSKVLDIGSGLGGGCKYINEKYGAHTHGIDICEKIVNIAKERNQDKAKIEFEAKDILKKDFPENN 117 (263)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 68999998504889998688868887889999999749879998588999999998551258548996785367788674
Q ss_pred HCCCCCCCCCCCCC-------HHHHHHCCCCCCCCEEECCC----------CCEEEEECCCCCEEECCEECCHHHHHHHH
Q ss_conf 30244433377552-------34698828658776576689----------80699981598178698653199999874
Q gi|254780466|r 276 LTVLTGKRTEPRVA-------FNLLVERGLIQPGQILTNAQ----------GNISATVCADGTLISGTELGSIHRVGAKV 338 (375)
Q Consensus 276 ~~~~~~~~~~~rvp-------fg~lie~g~l~~g~~L~~~~----------~~~~a~v~~DG~l~~~~~~gsIh~i~a~~ 338 (375)
+.+..++.+-..|| |... .-.|+||-.|.-.+ ....+.|++-|- ...|+-+.+-.+
T Consensus 118 FDvV~S~dailHip~~DK~~l~~e~--~RvLKPGG~llitDw~~~~~~~~s~~~~~yi~~r~~-----~l~s~~~Y~~~l 190 (263)
T PTZ00098 118 FDLIYSRDAILHLSLADKKKLFEKC--YKWLKPNGILLITDYCADEIENWDDEFKAYIKKRKY-----TLIPIEEYADII 190 (263)
T ss_pred EEEEEEEHHHHCCCHHHHHHHHHHH--HHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCC-----CCCCHHHHHHHH
T ss_conf 5589875022308824399999999--998468878999750135789973989999984687-----667999999999
Q ss_pred CCC
Q ss_conf 498
Q gi|254780466|r 339 SGS 341 (375)
Q Consensus 339 ~~~ 341 (375)
..+
T Consensus 191 ~~a 193 (263)
T PTZ00098 191 KAC 193 (263)
T ss_pred HHC
T ss_conf 977
No 59
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=95.98 E-value=0.021 Score=34.73 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
Q ss_conf 1899999998528-998889986888517999999809816999728999999999996305687656302444333775
Q gi|254780466|r 209 PEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287 (375)
Q Consensus 209 P~~LleriI~~~S-~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~r 287 (375)
-+.|+.++..+.- -.-|.|+|-|||-||-..==-+-=|.-+|||..++.++-|++-=+.=. +.+.++...+.+..-|+
T Consensus 279 ~~~l~~~a~~~l~Lqg~e~V~DayCG~GtftLpLA~qak~v~G~E~v~e~v~~a~~NAe~Ng-~~N~~F~~g~~E~~~p~ 357 (434)
T TIGR00479 279 TEKLVDRALEALELQGEEKVVDAYCGVGTFTLPLAKQAKSVVGVEVVPESVEDAKRNAELNG-IANVEFLAGTLETVLPK 357 (434)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCC
T ss_conf 79999999999715986557863157552004444012188887143767899988888603-53201333123211014
Q ss_pred C
Q ss_conf 5
Q gi|254780466|r 288 V 288 (375)
Q Consensus 288 v 288 (375)
-
T Consensus 358 ~ 358 (434)
T TIGR00479 358 Q 358 (434)
T ss_pred C
T ss_conf 4
No 60
>pfam02086 MethyltransfD12 D12 class N6 adenine-specific DNA methyltransferase.
Probab=95.98 E-value=0.034 Score=33.47 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHH
Q ss_conf 999999985289-9888998688851799999980981699972899999999
Q gi|254780466|r 211 ALLSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262 (375)
Q Consensus 211 ~LleriI~~~S~-~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~ 262 (375)
.|+.+|+....+ ......|||+|+|+.+..++..+-+.|.-|++++-+.+-+
T Consensus 7 ~l~~~I~~~~p~~~~~~yvEPF~GggsV~~~~~~~~~~~~iNDin~~l~~~~~ 59 (254)
T pfam02086 7 KLLPEIKEHIPKGGDRRFVEPFAGGGAVFFEAKKRGKKVLINDINYDLINLYK 59 (254)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 99999998568578999998368777999976416886999968889999999
No 61
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=95.96 E-value=0.089 Score=30.95 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=56.3
Q ss_pred HHHHCCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 35532708517259989728414711898477876155871333678513001344357789899999889999999986
Q gi|254780466|r 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95 (375)
Q Consensus 16 ~~~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~Rv 95 (375)
..+=+=+|+.+|..+.|+.-+ ++.|+|+.|.|=-. + ...--|+.++...|+|.
T Consensus 126 ~~dprv~l~~~Dg~~~l~~~~-~~yDvII~D~~DP~-------------------------~-~~~~Lfs~eFy~~~~~~ 178 (240)
T pfam01564 126 FDDPRVKVVIGDGFKFLKDYL-VKFDVIIVDSTDPV-------------------------G-PAENLFSKEFYDLLKRA 178 (240)
T ss_pred CCCCCEEEEEHHHHHHHHHCC-CCCCEEEEECCCCC-------------------------C-HHHHHHHHHHHHHHHHH
T ss_conf 479855999816899998572-54458999589976-------------------------5-33444229999999986
Q ss_pred CCCCCEEEEECCHH-----HHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 39687299983468-----8899998764057860124687315677775
Q gi|254780466|r 96 LKPNGTLWVIGSYH-----NIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140 (375)
Q Consensus 96 LK~~Gsi~v~~~~~-----~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~ 140 (375)
|+++|.+.+.+.-. .+..+...+++. |. .+.-+..++|.+
T Consensus 179 L~~~Gi~v~Q~~sp~~~~~~~~~i~~~l~~~-F~----~v~~y~~~vPsy 223 (240)
T pfam01564 179 LKEDGVFVTQAESPWLHLELIINILKNGKKV-FP----VVMPYVVPVPTY 223 (240)
T ss_pred CCCCCEEEEECCCHHHCHHHHHHHHHHHHHH-CC----CCEEEEEECCCC
T ss_conf 5999789992488343799999999999977-89----826998674668
No 62
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.94 E-value=0.024 Score=34.36 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=43.0
Q ss_pred HCCCCCCEEEECCCCCHHHH-HHHHHHC--CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 52899888998688851799-9999809--816999728999999999996305
Q gi|254780466|r 219 SSTKPGDIILDPFFGSGTSG-AVAKKLR--RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 219 ~~S~~gDiVLDPF~GSGTT~-~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
+.-+||+.|||-=+|+|-.+ .+|.+.| =+-||+|++++-++.|+++.++.-
T Consensus 69 a~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G 122 (258)
T PRK11873 69 AELKPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG 122 (258)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 657999989994788777599999986999779998599999999999999759
No 63
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.90 E-value=0.063 Score=31.85 Aligned_cols=20 Identities=0% Similarity=0.189 Sum_probs=9.5
Q ss_pred EECHHHHHHHHHHHHHCCCC
Q ss_conf 72899999999999630568
Q gi|254780466|r 252 EMKQDYIDIATKRIASVQPL 271 (375)
Q Consensus 252 E~~~~Y~~~a~~Rl~~~~~~ 271 (375)
++++-|.+++++.|+.++.-
T Consensus 202 Drt~~~~~~~~~el~~le~~ 221 (263)
T PTZ00098 202 DISDYWLELLELEHKKLEEK 221 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 14289999999999999860
No 64
>TIGR00571 dam DNA adenine methylase; InterPro: IPR012326 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes . N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognize a specific sequence in DNA and methylate an adenine in that sequence. It has been shown , , , that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A . The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements . According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=95.87 E-value=0.024 Score=34.38 Aligned_cols=85 Identities=16% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf 7085172599897284147118984778761558713336785130013-443577898999998899999999863-96
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLLACRRVL-KP 98 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~-d~wd~~~s~~~Y~~f~~~wl~e~~RvL-K~ 98 (375)
=+|+|+|=-.+|..++++|-++||.||||-.-- ..+.+.+|. +.|+ +.-...|..+.+.| ++
T Consensus 203 ~~f~c~~F~~~~~~~~~~sP~fVY~DPPY~p~~-------~~~~Ft~Y~~~~F~---------~~~q~~La~~~~~l~~~ 266 (327)
T TIGR00571 203 TTFLCGSFEKILEMVDRDSPDFVYLDPPYLPLS-------ATANFTGYHKNGFD---------EDEQKRLANFCKSLSDE 266 (327)
T ss_pred CEEEECCHHHHHHHCCCCCCCEEEECCCCCCCC-------CCEEECCCCCCCCC---------HHHHHHHHHHHHHHHHH
T ss_conf 157525667886230378883787577899852-------32131156557888---------89999999999875453
Q ss_pred CCEEEEECCH----HHHH--HHHHHHHHC
Q ss_conf 8729998346----8889--999876405
Q gi|254780466|r 99 NGTLWVIGSY----HNIF--RIGTMLQNL 121 (375)
Q Consensus 99 ~Gsi~v~~~~----~~i~--~i~~~l~~~ 121 (375)
-|..++.... .... -+..+.++.
T Consensus 267 rg~~~~~SN~~~~l~~~~~~~~~elY~~~ 295 (327)
T TIGR00571 267 RGIKFLLSNSVRDLEDSSRIFIRELYRGF 295 (327)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 06604774564543365378999875223
No 65
>pfam05430 DUF752 Protein of unknown function (DUF752). This family contains several uncharacterized bacterial proteins with no known function.
Probab=95.87 E-value=0.019 Score=35.08 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 70851725998972841471189847787615587133367851300134435778989999988999999998639687
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~G 100 (375)
=.|+.||..+.|+.+. ..||.+|-|+= . .-..=+-|+.+.+.+++|+++++|
T Consensus 33 L~L~~GDa~~~l~~l~-~~~DawflDgF-s--------------------------P~~nPemWs~~~f~~i~~~~~~~~ 84 (124)
T pfam05430 33 LDLWFGDARAALPELD-FKADAWFLDGF-S--------------------------PAKNPEMWTVEFFALLARRSKPGG 84 (124)
T ss_pred EEEEECCHHHHHHHCC-CCEEEEEECCC-C--------------------------CCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9999640999988462-30109997798-9--------------------------531810321999999999726898
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCE
Q ss_conf 2999834688899998764057860
Q gi|254780466|r 101 TLWVIGSYHNIFRIGTMLQNLNFWI 125 (375)
Q Consensus 101 si~v~~~~~~i~~i~~~l~~~gf~~ 125 (375)
++--++ ..-.|...|++.||.+
T Consensus 85 ~l~Tys---~a~~Vr~~L~~aGF~v 106 (124)
T pfam05430 85 TLATYS---SAGFVRRGLIAAGFHV 106 (124)
T ss_pred EEEEEE---CCHHHHHHHHHCCCEE
T ss_conf 899875---5689999999879889
No 66
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=95.81 E-value=0.025 Score=34.27 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=11.1
Q ss_pred EECCCHHHHHHHCCC----CCCCEEEEC
Q ss_conf 851725998972841----471189847
Q gi|254780466|r 23 IIKGNSISVLEKLPA----KSVDLIFAD 46 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd----~sVDlI~tD 46 (375)
++.||+++.|+.|.+ +++|+||.|
T Consensus 100 ~~~gdA~~~l~~l~~~~~~~~fD~vFiD 127 (204)
T pfam01596 100 FRVGDALKTLEQLVEDKPLGEFDFAFVD 127 (204)
T ss_pred EEEECHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 9987499999999844777764389981
No 67
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=95.65 E-value=0.073 Score=31.47 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=42.2
Q ss_pred HHHHH-CCCCCCEEEECCCCCHHHHH-HHHHHC--CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 99985-28998889986888517999-999809--816999728999999999996305
Q gi|254780466|r 215 RILVS-STKPGDIILDPFFGSGTSGA-VAKKLR--RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 215 riI~~-~S~~gDiVLDPF~GSGTT~~-aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
+++.. .-.+|+.|||-=||||..+. .|+..+ -..+|+|++++.++.|++|+++..
T Consensus 38 ~~v~~~~~~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S~~ML~~a~~k~~~~~ 96 (233)
T pfam01209 38 FTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEG 96 (233)
T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 99986189999989982540588999999984999749999699999999999998569
No 68
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.64 E-value=0.042 Score=32.96 Aligned_cols=50 Identities=30% Similarity=0.379 Sum_probs=31.8
Q ss_pred EECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 85172599897284147118984778761558713336785130013443577898999998899999999863968729
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi 102 (375)
+..||.-+ | -+||+|||+|+..==.|+ +.| -...|.|++|||||+|.+
T Consensus 128 F~~Gdae~-L-Pl~D~SfDvViSncVlnl----------------~pD--------------k~~vl~E~~RVLKPGGRl 175 (258)
T PRK11873 128 FRLGEIEA-L-PVADGSVDVIISNCVINL----------------SPD--------------KERVFREAFRVLKPGGRF 175 (258)
T ss_pred EEEECCCC-C-CCCCCCEEEEEECCEEEC----------------CCC--------------HHHHHHHHHHHCCCCCEE
T ss_conf 99955531-3-689883519988246760----------------798--------------799999999962889789
Q ss_pred EE
Q ss_conf 99
Q gi|254780466|r 103 WV 104 (375)
Q Consensus 103 ~v 104 (375)
.|
T Consensus 176 ~I 177 (258)
T PRK11873 176 AI 177 (258)
T ss_pred EE
T ss_conf 99
No 69
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.60 E-value=0.04 Score=33.05 Aligned_cols=65 Identities=28% Similarity=0.470 Sum_probs=32.8
Q ss_pred CEECCCHHHHHHH-CCCCCCCEEEE---CCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0851725998972-84147118984---7787615587133367851300134435778989999988999999998639
Q gi|254780466|r 22 KIIKGNSISVLEK-LPAKSVDLIFA---DPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97 (375)
Q Consensus 22 kI~~GDcl~~l~~-Lpd~sVDlI~t---DPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK 97 (375)
++++||+.++|.. ++++|+|-|++ || |-+.+...- =-+..+.|.++.++|+
T Consensus 107 ~i~~~da~~~l~~~~~~~s~~~i~i~FPDP--WpKkrH~KR-----------------------Rli~~~fl~~~~~~Lk 161 (229)
T PRK00121 107 RLLCGDAVEVLEHFLPDGSLDRIYLNFPDP--WPKKRHHKR-----------------------RLVQPEFLELYARVLK 161 (229)
T ss_pred EEEECCHHHHHHHHCCCCCCCEEEECCCCC--CCCCCCCCC-----------------------CCCCHHHHHHHHHHCC
T ss_conf 988347899999714645414046717999--976320240-----------------------1289999999998579
Q ss_pred CCCEEEEECCHHHH
Q ss_conf 68729998346888
Q gi|254780466|r 98 PNGTLWVIGSYHNI 111 (375)
Q Consensus 98 ~~Gsi~v~~~~~~i 111 (375)
++|.+++.+|+...
T Consensus 162 ~~G~i~~~TD~~~Y 175 (229)
T PRK00121 162 PGGEFHFATDWEEY 175 (229)
T ss_pred CCCEEEEEECCHHH
T ss_conf 99889998187999
No 70
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=95.56 E-value=0.048 Score=32.56 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=42.7
Q ss_pred CEECCCHHHHHHHCCCCC--CCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 085172599897284147--118984778761558713336785130013443577898999998899999999863968
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~s--VDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~ 99 (375)
.+.+++.+........+. +|.||.||||+.+. .++++-++-+.+-|.-+...|+|+
T Consensus 113 ~~~~~~~~~~~~~~~~~ts~~d~iylDPPf~~~~----------------------ad~~~~l~l~~~alerl~~~L~~~ 170 (210)
T TIGR00095 113 TVLNDAERALLFLAKKQTSPFDIIYLDPPFNTGL----------------------ADLEAILELLGEALERLNKWLNPK 170 (210)
T ss_pred EEHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC----------------------CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0000256665776517996114787148888761----------------------037999999999999873104878
Q ss_pred CEEEEECCH
Q ss_conf 729998346
Q gi|254780466|r 100 GTLWVIGSY 108 (375)
Q Consensus 100 Gsi~v~~~~ 108 (375)
+.|+|.-+-
T Consensus 171 ~~i~ve~~~ 179 (210)
T TIGR00095 171 GLIVVEYDR 179 (210)
T ss_pred CEEEEEECC
T ss_conf 579986341
No 71
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.017 Score=35.28 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEE---ECC---HHHHHHHHHHHHHCCCCE
Q ss_conf 899999889999999986396872999---834---688899998764057860
Q gi|254780466|r 78 FEAYDAFTRAWLLACRRVLKPNGTLWV---IGS---YHNIFRIGTMLQNLNFWI 125 (375)
Q Consensus 78 ~~~Y~~f~~~wl~e~~RvLK~~Gsi~v---~~~---~~~i~~i~~~l~~~gf~~ 125 (375)
-+.|..-+.+-|.+|+.+|+++|-+-. +.+ |.+. +-.-+.+.||-+
T Consensus 560 ~~~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tl--veA~~Rragl~i 611 (875)
T COG1743 560 VEEFENLFREAFQAVRELLKDDGRLVTYYAHKAPEAWITL--VEAGWRRAGLQI 611 (875)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH--HHHHHHHCCCEE
T ss_conf 9999999999999999863888617999862687531768--888875256403
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.50 E-value=0.025 Score=34.31 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=38.9
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 998889986888517999999809--81699972899999999999630
Q gi|254780466|r 222 KPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 222 ~~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
...+-|||-=||.|--++++.+.. -+...+|.|...++.|++-++.-
T Consensus 195 ~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N 243 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAAN 243 (342)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 2488478606781799999998699976999968899999999989980
No 73
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=95.46 E-value=0.036 Score=33.30 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 8998889986888517999999809--816999728999999999996305
Q gi|254780466|r 221 TKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 221 S~~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
..+++-|||--||||.-++++.+.+ .+.+++|+++..++.|++.++.-.
T Consensus 29 ~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~ 79 (170)
T pfam05175 29 KPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANG 79 (170)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHC
T ss_conf 778994999776482989999997898679851544999999999999809
No 74
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=95.46 E-value=0.015 Score=35.62 Aligned_cols=87 Identities=26% Similarity=0.420 Sum_probs=60.0
Q ss_pred CHHHHCCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 33553270851725998972841471189847787615587133367851300134435778989999988999999998
Q gi|254780466|r 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94 (375)
Q Consensus 15 ~~~~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~R 94 (375)
....+.-+|+.|||.++.+.++|+|+|.|+-|||=.+... +=| +.+.-.|++|
T Consensus 181 ~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~Ag------------------------eLY---seefY~El~R 233 (287)
T COG2521 181 ELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAG------------------------ELY---SEEFYRELYR 233 (287)
T ss_pred CCCCCCCEEECCCHHHHHHCCCCCCCCEEEECCCCCCHHH------------------------HHH---HHHHHHHHHH
T ss_conf 2020031786165999974188653016860797331023------------------------576---8999999999
Q ss_pred HCCCCCEEEEECC-----HHH---HHHHHHHHHHCCCCEEEE
Q ss_conf 6396872999834-----688---899998764057860124
Q gi|254780466|r 95 VLKPNGTLWVIGS-----YHN---IFRIGTMLQNLNFWILND 128 (375)
Q Consensus 95 vLK~~Gsi~v~~~-----~~~---i~~i~~~l~~~gf~~~n~ 128 (375)
+||++|.+|-..+ |+- .-.|..-|.++||.....
T Consensus 234 iLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 234 ILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 707698079972798740246771478999998617344432
No 75
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.37 E-value=0.039 Score=33.10 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=56.1
Q ss_pred HHCCCCCCEEEECCCCCHHHH-HHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHHC
Q ss_conf 852899888998688851799-9999809816999728999999999996305687656302444333775523469882
Q gi|254780466|r 218 VSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296 (375)
Q Consensus 218 ~~~S~~gDiVLDPF~GSGTT~-~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~rvpfg~lie~ 296 (375)
++--+||+.|||-=||=|.++ .||++.|=+-+|+.++++-.+.+++|+...--.....+...+-.....+ |...|.-
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~--fDrIvSv 144 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP--FDRIVSV 144 (283)
T ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC--CCEEEEH
T ss_conf 56999999898747884499999999849979996689999999999999759976607996562103243--4205560
Q ss_pred CCCC
Q ss_conf 8658
Q gi|254780466|r 297 GLIQ 300 (375)
Q Consensus 297 g~l~ 300 (375)
|.++
T Consensus 145 gmfE 148 (283)
T COG2230 145 GMFE 148 (283)
T ss_pred HHHH
T ss_conf 0688
No 76
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=95.36 E-value=0.037 Score=33.25 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCCCEEEEE---CCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999999863968729998---3468889999876405786012
Q gi|254780466|r 87 AWLLACRRVLKPNGTLWVI---GSYHNIFRIGTMLQNLNFWILN 127 (375)
Q Consensus 87 ~wl~e~~RvLK~~Gsi~v~---~~~~~i~~i~~~l~~~gf~~~n 127 (375)
+.+.|++||||++|.+||. .-+.++-.....+..+||.+.+
T Consensus 134 ~fi~EA~RvLk~~G~L~IAEV~SRf~~~~~Fv~~~~~~GF~~~~ 177 (214)
T pfam05148 134 DFLKEANRILKNGGLLKIAEVRSRFPSVGLFERAFTKLGFEVEH 177 (214)
T ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 99999876031087899999740168989999999975976775
No 77
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.16 Score=29.45 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=58.0
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 70851725998972841471189847787615587133367851300134435-77898999998899999999863968
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPN 99 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd-~~~s~~~Y~~f~~~wl~e~~RvLK~~ 99 (375)
.+++.-++ +....++. .+|+|++-|||= ........+.. +..++. ...+..+-+++.+.++.++.+.|+++
T Consensus 160 ~~~~~~~~-dlf~~~~~-~fDlIVsNPPYi-p~~~~~~~~~~-----~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~ 231 (280)
T COG2890 160 VRVLVVQS-DLFEPLRG-KFDLIVSNPPYI-PAEDPELLPEV-----VRYEPLLALVGGGDGLEVYRRILGEAPDILKPG 231 (280)
T ss_pred CCEEEEEC-CHHHCCCC-CCCEEEECCCCC-CCCCCCCCCCC-----CCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 74798740-03334688-857799689988-88521137421-----358979987248777899999999899872868
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 729998346888999987640578
Q gi|254780466|r 100 GTLWVIGSYHNIFRIGTMLQNLNF 123 (375)
Q Consensus 100 Gsi~v~~~~~~i~~i~~~l~~~gf 123 (375)
|.+.+-.++...-.+..++++.|+
T Consensus 232 g~l~le~g~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 232 GVLILEIGLTQGEAVKALFEDTGF 255 (280)
T ss_pred CEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 289999769848999999997498
No 78
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.23 E-value=0.026 Score=34.19 Aligned_cols=46 Identities=22% Similarity=0.510 Sum_probs=30.0
Q ss_pred CCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 98889986888517999999809--81699972899999999999630
Q gi|254780466|r 223 PGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 223 ~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
+|+.|||--||||--+..-.+.. =+-+|+|+++.-++.|++|+.+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~ 98 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK 98 (238)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCC
T ss_conf 998799966873199999999658844999979999999999874324
No 79
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.13 Score=29.94 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHC----CCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHH
Q ss_conf 8778189999999852----8998889986888517999999809-8169997289999999999963
Q gi|254780466|r 205 PTQKPEALLSRILVSS----TKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 205 PTqKP~~LleriI~~~----S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+.+-|..+...++-.. --+|-.|+|-=||+|.-+.+|..|| ++-+|+|+|++.++++++-.+.
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 34798489999999998738847888888278847889999862971799993698999999988886
No 80
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.11 E-value=0.072 Score=31.52 Aligned_cols=69 Identities=26% Similarity=0.414 Sum_probs=46.8
Q ss_pred CCCEECCCHHHHHHHCCCC-CCCEEEE---CCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2708517259989728414-7118984---77876155871333678513001344357789899999889999999986
Q gi|254780466|r 20 KDKIIKGNSISVLEKLPAK-SVDLIFA---DPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95 (375)
Q Consensus 20 ~nkI~~GDcl~~l~~Lpd~-sVDlI~t---DPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~Rv 95 (375)
.=+|+++|+.++|..++++ |+|-|+. || |-+.+-.+.| . - ....++++.|+
T Consensus 99 Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDP--WpKkRH~KRR---------------l----~----~~~fl~~~a~~ 153 (227)
T COG0220 99 NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDP--WPKKRHHKRR---------------L----T----QPEFLKLYARK 153 (227)
T ss_pred CEEEEECCHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCCCCC---------------C----C----CHHHHHHHHHH
T ss_conf 46998077999997358988565799979999--9876643321---------------4----7----88999999997
Q ss_pred CCCCCEEEEECCHHHHHH
Q ss_conf 396872999834688899
Q gi|254780466|r 96 LKPNGTLWVIGSYHNIFR 113 (375)
Q Consensus 96 LK~~Gsi~v~~~~~~i~~ 113 (375)
||++|.+.+-+|+...+.
T Consensus 154 Lk~gG~l~~aTD~~~y~e 171 (227)
T COG0220 154 LKPGGVLHFATDNEEYFE 171 (227)
T ss_pred CCCCCEEEEEECCHHHHH
T ss_conf 268978999726799999
No 81
>PRK08317 hypothetical protein; Provisional
Probab=95.11 E-value=0.039 Score=33.13 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=32.2
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs 101 (375)
.+.++|..+ | .+|++|+|+|++.=-. +|..-....|.|++|+|||+|.
T Consensus 72 ~~~~~d~~~-l-p~~d~sfD~v~~~~~l------------------------------~h~~d~~~~l~e~~RvLkPGG~ 119 (241)
T PRK08317 72 EFVRGDADG-L-PFPDESFDAVRSDRVL------------------------------QHLEDPRRALAEMARVLRPGGR 119 (241)
T ss_pred EEEECCHHH-C-CCCCCCCCEEEHHHHH------------------------------HHCCCHHHHHHHHHHHCCCCCE
T ss_conf 999554643-5-8988870456221157------------------------------6225899999999998188838
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780466|r 102 LWVI 105 (375)
Q Consensus 102 i~v~ 105 (375)
+.++
T Consensus 120 ~vi~ 123 (241)
T PRK08317 120 AVVL 123 (241)
T ss_pred EEEE
T ss_conf 9999
No 82
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=95.09 E-value=0.12 Score=30.17 Aligned_cols=79 Identities=25% Similarity=0.427 Sum_probs=49.0
Q ss_pred HCC-CEECCCHHHHHHH-CCCCCCCEEEE---CCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 327-0851725998972-84147118984---778761558713336785130013443577898999998899999999
Q gi|254780466|r 19 WKD-KIIKGNSISVLEK-LPAKSVDLIFA---DPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93 (375)
Q Consensus 19 ~~n-kI~~GDcl~~l~~-Lpd~sVDlI~t---DPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~ 93 (375)
..| ++++||+.++|.. ++++|||-|+. || |-+.+-...| -+..+.+.++.
T Consensus 70 l~Ni~~~~~da~~~l~~~~~~~~l~~i~i~FPDP--WpKkrH~KRR-----------------------li~~~fl~~~~ 124 (199)
T pfam02390 70 LQNLRILCGDAMKLLPNLFPDGSLQKIFINFPDP--WPKKRHHKRR-----------------------LLQPEFLKEYA 124 (199)
T ss_pred CCCEEEECCCHHHHHHHHCCCCCEEEEEEECCCC--CCCCCCCCCC-----------------------CCCHHHHHHHH
T ss_conf 7737876047999999757988642799967999--8764424400-----------------------07999999999
Q ss_pred HHCCCCCEEEEECCHHHHHH-HHHHHHHCC
Q ss_conf 86396872999834688899-998764057
Q gi|254780466|r 94 RVLKPNGTLWVIGSYHNIFR-IGTMLQNLN 122 (375)
Q Consensus 94 RvLK~~Gsi~v~~~~~~i~~-i~~~l~~~g 122 (375)
++||++|.+++.+|+...+. +...+++.+
T Consensus 125 ~~Lk~gG~l~~~TD~~~y~~~~~e~~~~~~ 154 (199)
T pfam02390 125 RVLKPGGVLHLATDVEEYFEWMLEHLSENH 154 (199)
T ss_pred HHCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 963889899998289999999999999656
No 83
>PRK10904 DNA adenine methylase; Provisional
Probab=95.04 E-value=0.097 Score=30.72 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=18.3
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 08517259989728414711898477876
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYn 50 (375)
.|.++|--+++....+ =|+||.||||-
T Consensus 159 ~i~~~df~~~~~~~~~--~dfvYlDPPY~ 185 (271)
T PRK10904 159 FFYCESYADSMARADD--GSVVYCDPPYA 185 (271)
T ss_pred EEEECCHHHHHHHCCC--CCEEEECCCCC
T ss_conf 7991899999973277--87898679876
No 84
>KOG1541 consensus
Probab=94.90 E-value=0.051 Score=32.44 Aligned_cols=58 Identities=29% Similarity=0.453 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCCC---CEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 899999998528998---8899868885179999998098169997289999999999963
Q gi|254780466|r 210 EALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 210 ~~LleriI~~~S~~g---DiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
.++.+|.++.-.-|+ .+|||-=||||-.+.+-..-|-.|||+|+++...++|.+|.-.
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e 94 (270)
T KOG1541 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE 94 (270)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHEECCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 7788878987608998871799834577743200216895588622898999999976640
No 85
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=94.89 E-value=0.023 Score=34.54 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999863968729998
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWVI 105 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v~ 105 (375)
..-|.|++|||||+|.+.|.
T Consensus 138 ~~~l~E~~RVLkPGG~l~il 157 (239)
T PRK00216 138 DKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHHHHHHHCCCCEEEEEE
T ss_conf 99999999876648089999
No 86
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=94.64 E-value=0.03 Score=33.81 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=39.8
Q ss_pred CEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 88998688851799999980981699972899999999999630
Q gi|254780466|r 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 225 DiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
-+|||+|+|+|.-+++..+.+.+-||+|+|+..++.|++..+--
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~~~Vi~vDi~~~~l~~A~~NA~iy 45 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAEVY 45 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 79999377807999999975898999979899999999989983
No 87
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.50 E-value=0.33 Score=27.45 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHCCCCCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 8528998889986888517999999809--816999728999999999996305
Q gi|254780466|r 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 218 ~~~S~~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
+.--.+|++|+|-=+|||+.++-|.++. -+-+++|.+++.++++++..++-.
T Consensus 35 kL~l~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfg 88 (196)
T PRK07402 35 QLRLEPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFG 88 (196)
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 708999999999478877999999987899889999768889999999899729
No 88
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=94.49 E-value=0.11 Score=30.49 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=74.2
Q ss_pred CCCCCCH--HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHHHCCCCCH-------
Q ss_conf 6877818--9999999852899888998688851799999980-98169997289999999999963056876-------
Q gi|254780466|r 204 HPTQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-RRSFIGIEMKQDYIDIATKRIASVQPLGN------- 273 (375)
Q Consensus 204 HPTqKP~--~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l-gR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~------- 273 (375)
-|.+-|+ .++..++..+..+.=+=+=.|.|=.|...|..-- ..+-+.||++++++++|++-++..---+.
T Consensus 40 ~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 40 VPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 99878148999999997349864999635237999999963888976999707989999999999975976528988357
Q ss_pred HHHCCCCCC-----------CC-CCCCCHHHHHHCCCCCCCCEEECCCCCEEEEECCCCCEEECCEECCHHHHHHHHCCC
Q ss_conf 563024443-----------33-775523469882865877657668980699981598178698653199999874498
Q gi|254780466|r 274 IELTVLTGK-----------RT-EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGS 341 (375)
Q Consensus 274 ~~~~~~~~~-----------~~-~~rvpfg~lie~g~l~~g~~L~~~~~~~~a~v~~DG~l~~~~~~gsIh~i~a~~~~~ 341 (375)
+.+.++... -. ..-.+|=..+ -.+|.||.++.-.+= .-.|.+-. -++...-+.+.+.
T Consensus 120 dal~~l~~~~~~~fDliFIDadK~~yp~~le~~-~~lLr~GGliv~DNv------l~~G~v~~----~~~~~~~~~~~~~ 188 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFIDADKADYPEYLERA-LPLLRPGGLIVADNV------LFGGRVAD----PSIRDARTQVRGV 188 (219)
T ss_pred CHHHHHHHCCCCCCCEEEEECCHHHCHHHHHHH-HHHHCCCCEEEEEEC------CCCCCCCC----CCCHHHHHHHHHH
T ss_conf 479999733478856899837843599999999-997378968998303------56786678----5511488999989
Q ss_pred CCCCCEEEEEEEECCEEEEH
Q ss_conf 10067114679759957129
Q gi|254780466|r 342 ETCNGWNFWYFEKLGELHSI 361 (375)
Q Consensus 342 ~~cNGw~fw~~~~~~~~~~i 361 (375)
...|-|-.+|-...-.++|+
T Consensus 189 ~~~~~~~~~~p~~~t~~lP~ 208 (219)
T COG4122 189 RDFNDYLLEDPRYDTVLLPL 208 (219)
T ss_pred HHHHHHHHHCCCCEEEEEEC
T ss_conf 99999876376741478745
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.45 E-value=0.34 Score=27.39 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH-HHHCC--EEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 8778189999999852899888998688851799999-98098--16999728999999999996305
Q gi|254780466|r 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA-KKLRR--SFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 205 PTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA-~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
|=.|.+--.--+-+.--.+|++|+|-=+|||+.++-| ...+. +-+++|.+++.++++++.+++..
T Consensus 22 PmTK~EVRa~~l~~L~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg 89 (198)
T PRK00377 22 PMTKEEIRALALSKLRLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFG 89 (198)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 86679999999997099998999991770329999999966978759999678889999999999809
No 90
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.39 E-value=0.24 Score=28.31 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=32.7
Q ss_pred EECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCC--E-ECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 8517259989728414711898477876155871--3-33678513001344357789899999889999999986396-
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--L-YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP- 98 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~--~-~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~- 98 (375)
++...|++.|.--|+ -||.|=-++-+.-.. + ..++..++-+++.+ . .-+..+...|++
T Consensus 10 VLl~E~i~~L~~~~~----giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD------~--------~Ai~~a~~~l~~~ 71 (314)
T COG0275 10 VLLNEVVELLAPKPD----GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRD------P--------QAIAIAKERLKEF 71 (314)
T ss_pred HHHHHHHHHCCCCCC----CEEEEECCCCCHHHHHHHHHCCCCCEEEEECCC------H--------HHHHHHHHHHHCC
T ss_conf 179999985264899----479982377747689999858988708997689------8--------9999999985303
Q ss_pred CC-EEEEECCHHHHHH
Q ss_conf 87-2999834688899
Q gi|254780466|r 99 NG-TLWVIGSYHNIFR 113 (375)
Q Consensus 99 ~G-si~v~~~~~~i~~ 113 (375)
++ ..+|++.+.++..
T Consensus 72 ~~r~~~v~~~F~~l~~ 87 (314)
T COG0275 72 DGRVTLVHGNFANLAE 87 (314)
T ss_pred CCCEEEEECCHHHHHH
T ss_conf 7848999576878998
No 91
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.39 E-value=0.35 Score=27.35 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCC
Q ss_conf 87781899999998528998889986888517999999809--8169997289999999999963056876563024443
Q gi|254780466|r 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282 (375)
Q Consensus 205 PTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~ 282 (375)
|-.|++==.--+=...-.+||+++|-=+||||-++-+...+ .+-|+||.+++.++++++-.++.. +++-.+......
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap 94 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAP 94 (187)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCCH
T ss_conf 9867998998898608899998999578866899999973988559999258889999999999849-996799954645
Q ss_pred CCCCCC
Q ss_conf 337755
Q gi|254780466|r 283 RTEPRV 288 (375)
Q Consensus 283 ~~~~rv 288 (375)
...+..
T Consensus 95 ~~L~~~ 100 (187)
T COG2242 95 EALPDL 100 (187)
T ss_pred HHHCCC
T ss_conf 763699
No 92
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.39 E-value=0.38 Score=27.10 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=60.9
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCE------ECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7085172599897284147118984778761558713------3367851300134435778989999988999999998
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~------~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~R 94 (375)
-+++++|-++ .++..++|+|++-|||=-.-+..+ +.|...-+ .-++=++|.+..+.++.+
T Consensus 161 v~~~~~d~~~---~~~~~~fDlIVSNPPYI~~~~~~~~~~~v~~EP~~AL~-----------gg~dGl~~~~~ii~~a~~ 226 (277)
T PRK09328 161 VRILQSDWFS---ALSGQQFAMIVSNPPYIDAQDPHLQQGDVRFEPLSALV-----------AADNGMADLAHIIEQARQ 226 (277)
T ss_pred EEEEECCCHH---HCCCCCCCEEEECCCCCCCCHHHHCCHHCCCCCHHHHH-----------CCCCHHHHHHHHHHHHHH
T ss_conf 9999447521---13787778899789987700034382421668389981-----------797589999999999998
Q ss_pred HCCCCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 639687299983468889999876405786
Q gi|254780466|r 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124 (375)
Q Consensus 95 vLK~~Gsi~v~~~~~~i~~i~~~l~~~gf~ 124 (375)
.|+++|.+++-.++...-.+..++...||.
T Consensus 227 ~L~~~G~l~~Eig~~Q~~~v~~l~~~~gf~ 256 (277)
T PRK09328 227 YLVPGGWLLLEHGWQQGEAVRQLFIRAGYS 256 (277)
T ss_pred HCCCCCEEEEEECHHHHHHHHHHHHHCCCC
T ss_conf 446698999996815899999999967997
No 93
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=94.38 E-value=0.11 Score=30.36 Aligned_cols=54 Identities=31% Similarity=0.577 Sum_probs=39.2
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs 101 (375)
.++++|..+. ...+++++|+|+.++++.- + .++. ..++++++|+|||+|.
T Consensus 50 ~~~~~d~~~~-~~~~~~~fD~V~~~~~~~~--------------------~-----~~~~----~~~l~~~~~~LkpgG~ 99 (107)
T cd02440 50 EVLKGDAEEL-PPEADESFDVIISDPPLHH--------------------L-----VEDL----ARFLEEARRLLKPGGV 99 (107)
T ss_pred EEECCCHHHC-CHHHCCCEEEEEEECCEEC--------------------C-----CCCH----HHHHHHHHHHCCCCCE
T ss_conf 6714886788-6320575319999175010--------------------6-----5189----9999999987485819
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780466|r 102 LWVI 105 (375)
Q Consensus 102 i~v~ 105 (375)
+++.
T Consensus 100 ~~is 103 (107)
T cd02440 100 LVLT 103 (107)
T ss_pred EEEE
T ss_conf 9999
No 94
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.31 E-value=0.2 Score=28.82 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=35.2
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs 101 (375)
..++||..+ |. +||+|+|++..+= .+ .++.++ ...|.|++|||||+|.
T Consensus 104 ~fv~~dAe~-LP-f~D~sFD~vt~~f--gl------------------------rnv~d~----~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 104 EFVVGDAEN-LP-FPDNSFDAVTISF--GL------------------------RNVTDI----DKALKEMYRVLKPGGR 151 (238)
T ss_pred EEEEECHHH-CC-CCCCCCCEEEEEE--HH------------------------HCCCCH----HHHHHHHHHHHCCCEE
T ss_conf 799705654-98-8887658898651--23------------------------527878----9999999876268749
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780466|r 102 LWVI 105 (375)
Q Consensus 102 i~v~ 105 (375)
+.+.
T Consensus 152 ~~vl 155 (238)
T COG2226 152 LLVL 155 (238)
T ss_pred EEEE
T ss_conf 9998
No 95
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=94.10 E-value=0.26 Score=28.07 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=12.5
Q ss_pred EECCCHHHHHHHCCCCCCCEEEE
Q ss_conf 85172599897284147118984
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFA 45 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~t 45 (375)
+++||.-+.+..+||+|+|+|+.
T Consensus 59 Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 59 VIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred EECCCHHHCHHHCCCCCCCEEEH
T ss_conf 45077445974577678037869
No 96
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=93.89 E-value=0.033 Score=33.55 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999863968729998
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWVI 105 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v~ 105 (375)
..-+.|++|||||+|.+.|.
T Consensus 133 ~~al~E~~RVLKPGG~l~il 152 (233)
T pfam01209 133 LKVLKEAFRVLKPGGRVVCL 152 (233)
T ss_pred HHHHHHHHHHCCCCCEEEEE
T ss_conf 99999999872789789999
No 97
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=93.83 E-value=0.28 Score=27.89 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=42.7
Q ss_pred HHCCCCCCEEEECCCCCHHHH--HHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 852899888998688851799--9999809816999728999999999996305
Q gi|254780466|r 218 VSSTKPGDIILDPFFGSGTSG--AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 218 ~~~S~~gDiVLDPF~GSGTT~--~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
..+.+++.++||--+|.|... .|+..-..+|||||+-...+..+.+|+.+..
T Consensus 15 ~~F~~~~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~ 68 (199)
T pfam02390 15 ALFGNEQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALR 68 (199)
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHC
T ss_conf 983999944999736888999999997899878999950599999999999845
No 98
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=93.74 E-value=0.35 Score=27.36 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHHHHHHHHC-CCCCCEEEECCCCCHHHH-HHHHHHC-CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 9999999852-899888998688851799-9999809-816999728999999999996305
Q gi|254780466|r 211 ALLSRILVSS-TKPGDIILDPFFGSGTSG-AVAKKLR-RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 211 ~LleriI~~~-S~~gDiVLDPF~GSGTT~-~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
.++.++|... -.++|+.+|-=+|-|.+. -||...| |.++|||+.+.-+++|+.-.+..+
T Consensus 29 ~fis~ii~~~~l~~~dvF~DLGSGVGnvv~QaAl~tgc~~s~GiEi~~~~a~~A~~~~~~~~ 90 (205)
T pfam08123 29 EFLSDVLDKCNLGPQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQDEEFK 90 (205)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 99999999839897688998588832999999987096538888865668999999999999
No 99
>PRK08317 hypothetical protein; Provisional
Probab=93.73 E-value=0.31 Score=27.69 Aligned_cols=55 Identities=24% Similarity=0.435 Sum_probs=43.6
Q ss_pred HHHHHHC-CCCCCEEEECCCCCHHHH-HHHHHHC--CEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 9999852-899888998688851799-9999809--81699972899999999999630
Q gi|254780466|r 214 SRILVSS-TKPGDIILDPFFGSGTSG-AVAKKLR--RSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 214 eriI~~~-S~~gDiVLDPF~GSGTT~-~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
++++... -.||+.|||-=||+|... ..|.+.| =+.+|+|+++..++.|++|....
T Consensus 9 ~~~l~~L~l~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~ 67 (241)
T PRK08317 9 ARTFELLAVQPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGL 67 (241)
T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 99997369999799999664174999999997499978999969889999999998622
No 100
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=93.72 E-value=0.24 Score=28.37 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=59.7
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCC------EECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08517259989728414711898477876155871------333678513001344357789899999889999999986
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ------LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~------~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~Rv 95 (375)
++++||-++ .++..++|+|++-|||=-..+.. .+.|...-+ .-.+=+.+.+..+.++.+.
T Consensus 175 ~~~~~D~~~---~~~~~~fDlIVSNPPYI~~~e~~~l~~ev~~EP~~AL~-----------gG~dGL~~yr~Ii~~a~~~ 240 (284)
T TIGR03533 175 TLIQSDLFA---ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALA-----------SGEDGLDLVRRILAEAADH 240 (284)
T ss_pred EEEECCHHH---HCCCCCCCEEEECCCCCCHHHHHHCCHHHCCCCHHHHC-----------CCCCHHHHHHHHHHHHHHH
T ss_conf 888351433---14577778799779978846554497641158699875-----------8955879999999988984
Q ss_pred CCCCCEEEE-ECCHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 396872999-834688899998764057860124687315
Q gi|254780466|r 96 LKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134 (375)
Q Consensus 96 LK~~Gsi~v-~~~~~~i~~i~~~l~~~gf~~~n~IIW~K~ 134 (375)
|+++|.+++ +|.-+ ..+..++.++|| +|-+.
T Consensus 241 L~pgG~l~lEiG~~Q--~~~~~~~~~~~~------~~~~~ 272 (284)
T TIGR03533 241 LNENGVLVVEVGNSM--EALEEAYPDVPF------TWLEF 272 (284)
T ss_pred CCCCCEEEEEECCCH--HHHHHHCCCCCC------EEEEE
T ss_conf 256978999979788--999986689996------47741
No 101
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=93.66 E-value=0.16 Score=29.45 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=19.8
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 08517259989728414711898477876
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYn 50 (375)
+.++.|+..-|..=--+++|++||||||-
T Consensus 95 ~~~~~DlR~pLP~~l~~~FD~f~TDPPyT 123 (243)
T pfam01861 95 EAFVHDLRNPLPEDLKHKFDVFITDPPET 123 (243)
T ss_pred EEEEECCCCCCCHHHHCCCCEEECCCCCC
T ss_conf 68874101489999961679897189987
No 102
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=93.65 E-value=0.29 Score=27.87 Aligned_cols=13 Identities=46% Similarity=0.997 Sum_probs=11.9
Q ss_pred CCCCEEEECCCCC
Q ss_conf 4711898477876
Q gi|254780466|r 38 KSVDLIFADPPYN 50 (375)
Q Consensus 38 ~sVDlI~tDPPYn 50 (375)
+++|.|+|||||.
T Consensus 488 ekfd~IVtDPPY~ 500 (875)
T COG1743 488 EKFDVIVTDPPYY 500 (875)
T ss_pred CCCCEEECCCCCC
T ss_conf 3686164589865
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.57 E-value=0.61 Score=25.87 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=47.9
Q ss_pred HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 89999999852-8998889986888517999999809816999728999999999996305
Q gi|254780466|r 210 EALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 210 ~~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
..+.-+++.+. -.+||.||+-=+|||-.+++.-++..+-+++|.+++-++.|+++|.+..
T Consensus 64 P~~~A~ml~~L~l~~~~~VLeIGtGsGY~tAlLa~l~~~V~siE~~~~l~~~a~~~l~~~~ 124 (213)
T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVERVFSVERIKTLQWQAKRRLKQLG 124 (213)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9999999998436899759996598609999999862928999428999999999999849
No 104
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=93.47 E-value=0.33 Score=27.47 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=30.4
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 98972841471189847787615587133367851300134435778989999988999999998639687299983468
Q gi|254780466|r 30 SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109 (375)
Q Consensus 30 ~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~~~~ 109 (375)
++...+ .+++|+|++||||= |-+- ..+...-++-++|++|-+.+.++..
T Consensus 77 ~lp~~l-~~~fD~vi~DPPFL--------------------------seec----~~K~a~t~~~L~k~~~kli~~Tg~~ 125 (161)
T pfam10237 77 ELPEQL-KGKFDRVIADPPFL--------------------------SEEC----LTKTAITIKLLLKPDSKLLLCTGER 125 (161)
T ss_pred CCHHHH-HCCCCEEEECCCCC--------------------------CHHH----HHHHHHHHHHHHCCCCEEEEECHHH
T ss_conf 087997-08678899899998--------------------------9999----9999999999808998799934899
Q ss_pred H
Q ss_conf 8
Q gi|254780466|r 110 N 110 (375)
Q Consensus 110 ~ 110 (375)
+
T Consensus 126 ~ 126 (161)
T pfam10237 126 M 126 (161)
T ss_pred H
T ss_conf 9
No 105
>PRK01581 speE spermidine synthase; Validated
Probab=93.45 E-value=0.4 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=15.6
Q ss_pred CCCHHHHCCCEECCCHHHHHHHCCCCCCCEEEECCC
Q ss_conf 243355327085172599897284147118984778
Q gi|254780466|r 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48 (375)
Q Consensus 13 ~~~~~~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPP 48 (375)
.++..+=+=+++++|..+.|.. ..+.+|.|++|=|
T Consensus 190 ~~AL~DPRV~Vvn~DAf~wL~~-~~~~FDvIIVDlP 224 (363)
T PRK01581 190 KSAFFDNRVNTHVCDAKEFLSS-PSSLYDVIIIDFP 224 (363)
T ss_pred HHHCCCCCEEEEECCHHHHHHC-CCCCCCEEEEECC
T ss_conf 2001498049992108999861-6754428999589
No 106
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=93.22 E-value=0.62 Score=25.81 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=12.1
Q ss_pred EECCCHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 8517259989728414711898477876
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFADPPYN 50 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~tDPPYn 50 (375)
++...+++.|.-.|++ +|.|=-|+
T Consensus 10 Vll~Evl~~L~~~~~g----~yvD~T~G 33 (309)
T PRK00050 10 VLLDEVVDGLAIKPDG----IYVDGTFG 33 (309)
T ss_pred CCHHHHHHHCCCCCCC----EEEEECCC
T ss_conf 3189999836828999----99993889
No 107
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.04 E-value=0.74 Score=25.37 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHH-HHHH--CCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 89999999852-89988899868885179999-9980--9816999728999999999996305
Q gi|254780466|r 210 EALLSRILVSS-TKPGDIILDPFFGSGTSGAV-AKKL--RRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 210 ~~LleriI~~~-S~~gDiVLDPF~GSGTT~~a-A~~l--gR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
..+.-+++.+. -.+||.|||-=.|||=.+++ |+-. ..+-+++|++++-++.|+++|.+..
T Consensus 62 P~~~a~ml~~L~l~~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~ 125 (214)
T PRK13942 62 IHMVAIMCELLDLDEGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLG 125 (214)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 9999999997279999979996799529999999974767857999717999999999998637
No 108
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=92.87 E-value=0.28 Score=27.89 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=40.2
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 998889986888517999999809--8169997289999999999963056
Q gi|254780466|r 222 KPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASVQP 270 (375)
Q Consensus 222 ~~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~~ 270 (375)
.++.-|||-=||-|.-++++.+.. .+-.-+|.|...++.|++-++.-.+
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~ 207 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207 (300)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 569968870788429999999868987289982669999998876997398
No 109
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.78 E-value=0.33 Score=27.51 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCCCCC-HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH-C-----CEEEEEEECHHHHHHHHHHHH--HCC-C---
Q ss_conf 687781-89999999852899888998688851799999980-9-----816999728999999999996--305-6---
Q gi|254780466|r 204 HPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-R-----RSFIGIEMKQDYIDIATKRIA--SVQ-P--- 270 (375)
Q Consensus 204 HPTqKP-~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l-g-----R~~IGiE~~~~Y~~~a~~Rl~--~~~-~--- 270 (375)
|-|+.. ..|+-+++.. .+.+.|+||-||||.-.+.|.+. + ..+.|.|+++.-+.+|+--+- .+. +
T Consensus 168 fyTP~~v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 168 FYTPREVSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 05879999999997577--6565234733540379999999997515550499895668899999961166278742234
Q ss_pred -CCHHHHCCCC----CC-C---CCCCCCHHHHH---------------HCCCCCC--CC-EEEC-------CCCCEEEEE
Q ss_conf -8765630244----43-3---37755234698---------------8286587--76-5766-------898069998
Q gi|254780466|r 271 -LGNIELTVLT----GK-R---TEPRVAFNLLV---------------ERGLIQP--GQ-ILTN-------AQGNISATV 316 (375)
Q Consensus 271 -~~~~~~~~~~----~~-~---~~~rvpfg~li---------------e~g~l~~--g~-~L~~-------~~~~~~a~v 316 (375)
..+....... .. + .--=-||+.-- ..|...| +. ..+- ..+...|.|
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~d~afi~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 33442368733234665550168657995544434433100243200025778889527899999999971867705899
Q ss_pred CCCCCEEECCEECCHHHHHHH
Q ss_conf 159817869865319999987
Q gi|254780466|r 317 CADGTLISGTELGSIHRVGAK 337 (375)
Q Consensus 317 ~~DG~l~~~~~~gsIh~i~a~ 337 (375)
.++|.|..+...+.|++-.-.
T Consensus 326 l~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 326 LPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred ECCCCCCCCCCHHHHHHHHHH
T ss_conf 258866277722579999875
No 110
>KOG2904 consensus
Probab=92.67 E-value=0.83 Score=25.05 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHHHCC----CCCCEEEECCCCCHHHHH-HHHHHC-CEEEEEEECHHHHHHHHHHHHHCCCCCHH
Q ss_conf 687781899999998528----998889986888517999-999809-81699972899999999999630568765
Q gi|254780466|r 204 HPTQKPEALLSRILVSST----KPGDIILDPFFGSGTSGA-VAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNI 274 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S----~~gDiVLDPF~GSGTT~~-aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~ 274 (375)
=|-.--|++.+++|.... -+++++||-++|||.-.. .++.|+ -+++.+|.++.++.+|.+-.....-.+..
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf 26846799999999997556532666688705783188999983478734899853288999999889987415846
No 111
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=92.65 E-value=0.84 Score=25.03 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=44.6
Q ss_pred HHCCCCCCEEEECCCCCHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 852899888998688851799999980--9816999728999999999996305
Q gi|254780466|r 218 VSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 218 ~~~S~~gDiVLDPF~GSGTT~~aA~~l--gR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
+.--.+|++|.|-=+|||+.++-|-++ +-+-+.+|.+++.++++++.+++..
T Consensus 25 kL~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg 78 (186)
T PRK08287 25 KLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFG 78 (186)
T ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 719999999999578877899999997899889999379899999999899729
No 112
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=92.55 E-value=0.38 Score=27.10 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999986396872999
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWV 104 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v 104 (375)
...|.|++|+|||+|.+.+
T Consensus 84 ~~~l~ei~RvLKPGG~lvi 102 (224)
T smart00828 84 MDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred HHHHHHHHHHCCCCEEEEE
T ss_conf 9999999987179849999
No 113
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.54 E-value=0.58 Score=25.99 Aligned_cols=27 Identities=37% Similarity=0.641 Sum_probs=15.3
Q ss_pred CEECCCHHHHHHHCCCCCC-CEEEECCCCC
Q ss_conf 0851725998972841471-1898477876
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSV-DLIFADPPYN 50 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sV-DlI~tDPPYn 50 (375)
+|+|+|-.+++..- .+. |+||.||||-
T Consensus 158 ~i~~~df~~v~~~a--~~~~dfvY~DPPY~ 185 (274)
T COG0338 158 TIENGDFEEVLADA--DSGDDFVYCDPPYL 185 (274)
T ss_pred EEECCCHHHHHHHC--CCCCCEEEECCCCC
T ss_conf 28717899998613--67881899589987
No 114
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=92.51 E-value=0.87 Score=24.92 Aligned_cols=65 Identities=28% Similarity=0.359 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHC-CCCCCEEEECCCCCHHHH-HHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 368778189999999852-899888998688851799-9999809816999728999999999996305
Q gi|254780466|r 203 LHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~-S~~gDiVLDPF~GSGTT~-~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
++-+| ..-+++++... -++|+-|||-=||=|+.+ .+|++.|-+..|+-++++-.+.|++|++...
T Consensus 43 Le~AQ--~~Kl~~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~~g~~v~giTlS~~Q~~~~~~r~~~~g 109 (273)
T pfam02353 43 LEEAQ--QAKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKLARQRVAAEG 109 (273)
T ss_pred HHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 99999--99999999865889999899978880899999998479518999797899999999998708
No 115
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.50 E-value=0.88 Score=24.91 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=47.1
Q ss_pred HHHHHHHHHHC-CCCCCEEEECCCCCHHHH-HHHHHHCC--EEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 89999999852-899888998688851799-99998098--16999728999999999996305
Q gi|254780466|r 210 EALLSRILVSS-TKPGDIILDPFFGSGTSG-AVAKKLRR--SFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 210 ~~LleriI~~~-S~~gDiVLDPF~GSGTT~-~aA~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
..+..+++.+. -++||-||+-=+|||=.. +.|+-.|+ +-+++|++++-++.|++++++..
T Consensus 58 P~~~a~ml~~L~~~~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~ 121 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG 121 (205)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9999999997068999989997898519999999983747717999536999999999999859
No 116
>pfam02086 MethyltransfD12 D12 class N6 adenine-specific DNA methyltransferase.
Probab=92.42 E-value=0.41 Score=26.91 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=5.9
Q ss_pred HHHCCCCCCCEEEECC
Q ss_conf 9728414711898477
Q gi|254780466|r 32 LEKLPAKSVDLIFADP 47 (375)
Q Consensus 32 l~~Lpd~sVDlI~tDP 47 (375)
.+.+|....+ .|.+|
T Consensus 13 ~~~~p~~~~~-~yvEP 27 (254)
T pfam02086 13 KEHIPKGGDR-RFVEP 27 (254)
T ss_pred HHHCCCCCCC-EEEEE
T ss_conf 9856857899-99983
No 117
>KOG0820 consensus
Probab=92.38 E-value=0.76 Score=25.29 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=56.7
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 687781899999998528998889986888517999999809816999728999999999996305
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
|-+--|+-+-.-+-.+-.+++|+||..=-|+|.-.++-.+.|.+-|.||+|+..+..-++|...+-
T Consensus 39 HilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820 39 HILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 555477889999860478998779995798778999999720848999408078999999866998
No 118
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=92.30 E-value=0.31 Score=27.63 Aligned_cols=17 Identities=12% Similarity=-0.119 Sum_probs=7.1
Q ss_pred EEEECCCCCHHHHHHHH
Q ss_conf 89986888517999999
Q gi|254780466|r 226 IILDPFFGSGTSGAVAK 242 (375)
Q Consensus 226 iVLDPF~GSGTT~~aA~ 242 (375)
+|++|..++-..+-+|.
T Consensus 172 vimnlP~~a~~fL~~A~ 188 (199)
T pfam02475 172 VIMNLPKSAHEFLDKAL 188 (199)
T ss_pred EEECCCCCHHHHHHHHH
T ss_conf 99489731699999999
No 119
>KOG2904 consensus
Probab=92.29 E-value=0.23 Score=28.44 Aligned_cols=15 Identities=40% Similarity=0.926 Sum_probs=6.4
Q ss_pred CCCCCCCEEEECCCC
Q ss_conf 841471189847787
Q gi|254780466|r 35 LPAKSVDLIFADPPY 49 (375)
Q Consensus 35 Lpd~sVDlI~tDPPY 49 (375)
++++.+|+++.-|||
T Consensus 218 l~~~~~dllvsNPPY 232 (328)
T KOG2904 218 LLEGKIDLLVSNPPY 232 (328)
T ss_pred CCCCCEEEEECCCCC
T ss_conf 545752488538996
No 120
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=92.14 E-value=0.92 Score=24.79 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCCCCCEEEECCCCCHHHH-HHHHHH-CCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 2899888998688851799-999980-9816999728999999999996305
Q gi|254780466|r 220 STKPGDIILDPFFGSGTSG-AVAKKL-RRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 220 ~S~~gDiVLDPF~GSGTT~-~aA~~l-gR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
...+|+.|||..+|-|.=. ..|... +-.-+.+|+++.-++..+++++...
T Consensus 242 ~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg 293 (428)
T PRK10901 242 APQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLG 293 (428)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9888987987168876689999996458928999698889999999999759
No 121
>PRK00811 spermidine synthase; Provisional
Probab=92.04 E-value=0.5 Score=26.41 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=31.6
Q ss_pred HCCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 32708517259989728414711898477876155871333678513001344357789899999889999999986396
Q gi|254780466|r 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98 (375)
Q Consensus 19 ~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~ 98 (375)
=+-+|+.+|..+.++.- +++.|+|+.|-|=-+ + .+..-|+.++...|++.|++
T Consensus 133 prv~~~~~Dg~~fv~~~-~~~yDvII~D~tDP~-------------------------g-pa~~Lft~~Fy~~~~~~L~~ 185 (283)
T PRK00811 133 PRVELVIGDGVKFVRET-ENSFDVIIVDSTDPV-------------------------G-PAEGLFTKEFYENCKRALKE 185 (283)
T ss_pred CCEEEEHHHHHHHHHHC-CCCCCEEEEECCCCC-------------------------C-HHHHHCCHHHHHHHHHHCCC
T ss_conf 71599827899999845-235548998089988-------------------------6-44553459999999985399
Q ss_pred CCEEEEE
Q ss_conf 8729998
Q gi|254780466|r 99 NGTLWVI 105 (375)
Q Consensus 99 ~Gsi~v~ 105 (375)
+|-+...
T Consensus 186 ~Gi~v~Q 192 (283)
T PRK00811 186 GGIFVAQ 192 (283)
T ss_pred CCEEEEC
T ss_conf 9589992
No 122
>KOG2078 consensus
Probab=91.79 E-value=0.081 Score=31.21 Aligned_cols=53 Identities=23% Similarity=0.279 Sum_probs=43.5
Q ss_pred HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 999985289988899868885179999998098169997289999999999963
Q gi|254780466|r 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 214 eriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+|+-. .-++|++|+|+|||-|--++-|-+-|-+-...+++++.++.-+.-+.-
T Consensus 241 erlsg-~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078 241 ERLSG-LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred HHHHH-CCCCCCHHHHHHCCCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCC
T ss_conf 88760-158741334440476743350222585899347997899999975653
No 123
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=91.72 E-value=0.41 Score=26.94 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-HHH-HCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 8999999985289988899868885179999-998-098169997289999999999963
Q gi|254780466|r 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKK-LRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 210 ~~LleriI~~~S~~gDiVLDPF~GSGTT~~a-A~~-lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
--||-..+...+ ...|||.=+|+|.-+.+ |.+ ...+-.|+|++++.+++|.+-++.
T Consensus 33 aiLL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l 90 (248)
T COG4123 33 AILLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL 90 (248)
T ss_pred HHHHHHHCCCCC--CCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 999976526566--8769883689468999974558778079998179999999998861
No 124
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=91.70 E-value=1.1 Score=24.34 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=11.7
Q ss_pred EECCCHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 85172599897284147118984778761
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFADPPYNL 51 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~tDPPYni 51 (375)
|++||.++. .+++..=-.|+.--|||+
T Consensus 80 ii~~D~l~~--d~~~~~~~~vvgNLPY~I 106 (258)
T pfam00398 80 VVHQDFLKF--SFPKHEPFLVVGNIPYNI 106 (258)
T ss_pred EEECCHHCC--CCCCCCCEEEEECCCCCC
T ss_conf 996630105--754578616894488634
No 125
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=91.61 E-value=1.1 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=10.2
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 729998346888999987640578
Q gi|254780466|r 100 GTLWVIGSYHNIFRIGTMLQNLNF 123 (375)
Q Consensus 100 Gsi~v~~~~~~i~~i~~~l~~~gf 123 (375)
-..++.+.+.++. .++.+.|.
T Consensus 71 r~~~~~~nF~~l~---~~l~~~~~ 91 (310)
T pfam01795 71 RVTLIHSNFANLF---AYLKELGV 91 (310)
T ss_pred CEEEEECCHHHHH---HHHHHCCC
T ss_conf 5899925375799---99987598
No 126
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=91.40 E-value=0.47 Score=26.58 Aligned_cols=97 Identities=23% Similarity=0.259 Sum_probs=58.1
Q ss_pred CCCEECCCHHHHH-----HHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2708517259989-----72841471189847787615587133367851300134435778989999988999999998
Q gi|254780466|r 20 KDKIIKGNSISVL-----EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94 (375)
Q Consensus 20 ~nkI~~GDcl~~l-----~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~R 94 (375)
.|-++||=.|.++ +.+..+++|+|+=-||| +.+..+..+.+. .+-.||-...- -+-+..+|.++=.
T Consensus 62 ~NA~~N~~~l~v~~~Dlf~~v~geKFdviLFNpPY-lp~~~d~~~gd~-----Ld~A~dGGkdG---r~vidrFldelp~ 132 (183)
T TIGR00537 62 ENAKLNNVELDVLETDLFEGVRGEKFDVILFNPPY-LPLEDDEKRGDY-----LDLAIDGGKDG---RKVIDRFLDELPE 132 (183)
T ss_pred HCCHHCCCCEEEEECCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCE-----EEEEECCCCCC---HHHHHHHHHHHHH
T ss_conf 31000266404761113578555510277307898-888765234766-----44333178730---5788888765688
Q ss_pred HCCCCCEEEEECCHHH-HHHHHHHHHHCCCCE
Q ss_conf 6396872999834688-899998764057860
Q gi|254780466|r 95 VLKPNGTLWVIGSYHN-IFRIGTMLQNLNFWI 125 (375)
Q Consensus 95 vLK~~Gsi~v~~~~~~-i~~i~~~l~~~gf~~ 125 (375)
.||++|...++-|-.+ --.+-..+++.||.+
T Consensus 133 ~lk~gGrv~l~~SSl~~e~~~~~kl~~~GF~~ 164 (183)
T TIGR00537 133 YLKEGGRVQLIQSSLSDEKDTLDKLDELGFKV 164 (183)
T ss_pred HHCCCCEEEEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 87059989999606688688998876158847
No 127
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=90.85 E-value=0.6 Score=25.91 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=51.6
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs 101 (375)
.++.||..+.|+.| +.+||..|-|. |..-..-+-|..+.+.++.|+++++++
T Consensus 145 ~l~~gd~~~~l~~l-~~~~Daw~lDg---------------------------F~P~~np~mW~~~~~~~~~~~~~~~~~ 196 (660)
T PRK01747 145 DLWFGDILELLPQL-DARADAWFLDG---------------------------FAPAKNPDMWSPNLFNALARLARPGAT 196 (660)
T ss_pred EEEECCHHHHHHHC-CCCCCEEEECC---------------------------CCCCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 99966599988745-10111898438---------------------------785558230688999999997289975
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCEE
Q ss_conf 9998346888999987640578601
Q gi|254780466|r 102 LWVIGSYHNIFRIGTMLQNLNFWIL 126 (375)
Q Consensus 102 i~v~~~~~~i~~i~~~l~~~gf~~~ 126 (375)
+--++ ..-.|...|++.||.+.
T Consensus 197 ~~T~t---aag~Vrr~L~~~GF~v~ 218 (660)
T PRK01747 197 LATFT---SAGFVRRGLQEAGFTVK 218 (660)
T ss_pred EEEEC---CHHHHHHHHHHCCCEEE
T ss_conf 88630---45899999997896698
No 128
>PRK04457 spermidine synthase; Provisional
Probab=90.78 E-value=1.2 Score=24.08 Aligned_cols=58 Identities=21% Similarity=0.390 Sum_probs=36.1
Q ss_pred CCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 27085172599897284147118984778761558713336785130013443577898999998899999999863968
Q gi|254780466|r 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99 (375)
Q Consensus 20 ~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~ 99 (375)
+-+|+++|..+.|+.- +++.|+|+.|=- + ++ |. .-.-++.+++..|++.|+++
T Consensus 118 Rl~V~~~Dg~~fv~~~-~~~~DvI~vD~f-d---------~~-----g~-----------~~~L~t~~Fy~~c~~~L~~~ 170 (262)
T PRK04457 118 KFEIIEADGAEYIKVF-PASTDVILVDGF-D---------GE-----QI-----------VDALVTQPFFRDCRNALSSD 170 (262)
T ss_pred CEEEEECCHHHHHHHC-CCCCCEEEEECC-C---------CC-----CC-----------CCCCCCHHHHHHHHHHCCCC
T ss_conf 2699955389998548-677788999688-9---------88-----88-----------60008299999999864989
Q ss_pred CEEEE
Q ss_conf 72999
Q gi|254780466|r 100 GTLWV 104 (375)
Q Consensus 100 Gsi~v 104 (375)
|.+-+
T Consensus 171 Gvlv~ 175 (262)
T PRK04457 171 GVFVT 175 (262)
T ss_pred CEEEE
T ss_conf 39999
No 129
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=90.69 E-value=0.67 Score=25.63 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=45.6
Q ss_pred HHHHHHHHHC-CCCCCEEEECCCCCHHHHHH-HHHHC----------CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 9999999852-89988899868885179999-99809----------816999728999999999996305
Q gi|254780466|r 211 ALLSRILVSS-TKPGDIILDPFFGSGTSGAV-AKKLR----------RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 211 ~LleriI~~~-S~~gDiVLDPF~GSGTT~~a-A~~lg----------R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
..++.+-... .+++.-|||--+|||--++. |+.-+ -+.+|+|++++-.++|++|..+.+
T Consensus 30 ~~~~~~~~~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~ 100 (242)
T TIGR01934 30 RAVKLIGVQLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEE 100 (242)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 99998786236888897788723839999999863575553357763378987079889999987413420
No 130
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.31 E-value=0.89 Score=24.87 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=32.8
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs 101 (375)
.++++|+-.+|.++. ..+|.|=.|| |+ |... +++.+.|-.+.+|-
T Consensus 105 ~v~n~DAN~lm~~~~-~~fd~IDiDP-FG--------------------------SPaP-------FlDaA~~s~~~~G~ 149 (380)
T COG1867 105 EVINKDANALLHELH-RAFDVIDIDP-FG--------------------------SPAP-------FLDAALRSVRRGGL 149 (380)
T ss_pred EEECCHHHHHHHHCC-CCCCEEECCC-CC--------------------------CCCH-------HHHHHHHHHHCCCE
T ss_conf 255342899987258-8763781389-99--------------------------9726-------79999997222988
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780466|r 102 LWVI 105 (375)
Q Consensus 102 i~v~ 105 (375)
+.|-
T Consensus 150 l~vT 153 (380)
T COG1867 150 LCVT 153 (380)
T ss_pred EEEE
T ss_conf 9998
No 131
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=90.02 E-value=1 Score=24.49 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=44.2
Q ss_pred HHHHHHHCC-CCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 999998528-9988899868885179999998098169997289999999999963
Q gi|254780466|r 213 LSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 213 leriI~~~S-~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+++|+..+. .++|.||.-=.|.|+-...-.+.+.+.+++|+|+..++.-+++...
T Consensus 2 i~kIv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~ 57 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHCC
T ss_conf 88998863899949799968970299999997316353163788999999986410
No 132
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=89.84 E-value=1.4 Score=23.68 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=24.8
Q ss_pred HCCCCCCEEEECCCCCHHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 528998889986888517999999809--816999728999999999996305
Q gi|254780466|r 219 SSTKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 219 ~~S~~gDiVLDPF~GSGTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
+..++ --||=-=+|-|.|+..+.+.. -+-+-+|+|+..+++|++.+....
T Consensus 73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~ 124 (282)
T COG0421 73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS 124 (282)
T ss_pred HCCCC-CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCC
T ss_conf 37997-76999889766999999836884337999708899999998666754
No 133
>TIGR00571 dam DNA adenine methylase; InterPro: IPR012326 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes . N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognize a specific sequence in DNA and methylate an adenine in that sequence. It has been shown , , , that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A . The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements . According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=89.80 E-value=0.69 Score=25.53 Aligned_cols=11 Identities=27% Similarity=0.452 Sum_probs=5.2
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999863968
Q gi|254780466|r 89 LLACRRVLKPN 99 (375)
Q Consensus 89 l~e~~RvLK~~ 99 (375)
|..+|+++|.+
T Consensus 67 Li~~Y~~~k~~ 77 (327)
T TIGR00571 67 LINLYKAIKNN 77 (327)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998258
No 134
>PRK05785 hypothetical protein; Provisional
Probab=89.72 E-value=1.4 Score=23.65 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=28.5
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 99999852899888998688851799999980981699972899999999999630
Q gi|254780466|r 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 213 leriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
+..+.....++++.|||-=+|||..+....+ ..+-+|+|.+++-+++|..+.+.+
T Consensus 41 v~~~~~~~~~~~~~vLDva~GTGd~a~~l~~-~~~v~~~D~s~~ML~~a~~~~~~v 95 (225)
T PRK05785 41 VKLIYKYDGKSPLKVLDAGAGPGNMAYHLRK-IRYVVALDYTEEMLRLNLVADDKV 95 (225)
T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCCE
T ss_conf 9998730678888289956884399999634-786999988999999876432113
No 135
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=89.72 E-value=0.52 Score=26.30 Aligned_cols=61 Identities=28% Similarity=0.407 Sum_probs=27.4
Q ss_pred CEECCCHHHHHHHCCC--CCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0851725998972841--47118984778761558713336785130013443577898999998899999999863968
Q gi|254780466|r 22 KIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd--~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~ 99 (375)
.+..+|...+-..+|+ +++|.+.|||||+..... ..+.+.......+.+..++++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~g~~~~~---------------------~~~~~~~l~~~~~~~~~~~~~~~ 315 (358)
T TIGR01177 257 SVKRGDAKDLPLRLPGLDESVDAIATDPPYGRSTTA---------------------AGDGLEELYEKSLEELHEVLKGG 315 (358)
T ss_pred EEEECCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCC---------------------CCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 764033001110035310112222125654531112---------------------21036888888888888864268
Q ss_pred CEEE
Q ss_conf 7299
Q gi|254780466|r 100 GTLW 103 (375)
Q Consensus 100 Gsi~ 103 (375)
|.+.
T Consensus 316 g~~~ 319 (358)
T TIGR01177 316 GWLA 319 (358)
T ss_pred CCEE
T ss_conf 7179
No 136
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=89.66 E-value=0.69 Score=25.55 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHC----CEEEEEEECHHHHHHHHHHHHHCCCCC
Q ss_conf 7875336877818999999985289988-89986888517999999809----816999728999999999996305687
Q gi|254780466|r 198 KDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLR----RSFIGIEMKQDYIDIATKRIASVQPLG 272 (375)
Q Consensus 198 ~~g~k~HPTqKP~~LleriI~~~S~~gD-iVLDPF~GSGTT~~aA~~lg----R~~IGiE~~~~Y~~~a~~Rl~~~~~~~ 272 (375)
..|.-.+|..--.++++|++...-.++- .+-||.||||--+-+---|- ++-|+-|+|++.+++|.+.|.-+.+-+
T Consensus 25 ApG~P~FPVRLAsEifqRal~~~~g~~p~tlwDpCCG~gYlLTvlgLLhr~~i~~v~aSDVd~~al~LA~~NL~LLt~~G 104 (249)
T pfam11599 25 AGGEPAFPVRLALEIFERALARLIGDAEISLWDCCCGGAYLLSILGLLHRNSIANLIASDIDPAPIELAADNLALLSKAG 104 (249)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
T ss_conf 89998841899999999999862688873033057771189999998531578777742588789999986454403201
No 137
>PRK06922 hypothetical protein; Provisional
Probab=89.21 E-value=0.41 Score=26.89 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=37.9
Q ss_pred HHHHHCCCCCCEEEECCCCCHHHHHH--HHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 99985289988899868885179999--998098169997289999999999963
Q gi|254780466|r 215 RILVSSTKPGDIILDPFFGSGTSGAV--AKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 215 riI~~~S~~gDiVLDPF~GSGTT~~a--A~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
++|+-+- +||.|+|-=+|.|--+-. -+.-+-+-+|||++..-++.-++|=.+
T Consensus 413 kiIldyi-~G~~ivdiG~GGGVMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~ 466 (679)
T PRK06922 413 RIILDYI-KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN 466 (679)
T ss_pred EEEEECC-CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 4542001-47679986699621487667658998614666608899999887775
No 138
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=1.9 Score=22.90 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 18999999985289988899868885179999998098169997289999999999963056
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~ 270 (375)
+++.+-. ..--.+|+-||+-=+|||=++++--++.++-+.+|++++-++.|+++|+...-
T Consensus 60 ~vA~m~~--~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~ 119 (209)
T COG2518 60 MVARMLQ--LLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY 119 (209)
T ss_pred HHHHHHH--HHCCCCCCEEEEECCCCHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCC
T ss_conf 9999999--74899998688877783099999999748499999719999999999997698
No 139
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=88.83 E-value=1.4 Score=23.73 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=10.7
Q ss_pred HHHHHHHHHCCCCCEEEEE
Q ss_conf 9999999863968729998
Q gi|254780466|r 87 AWLLACRRVLKPNGTLWVI 105 (375)
Q Consensus 87 ~wl~e~~RvLK~~Gsi~v~ 105 (375)
..+..+.++|+|+|.+-|.
T Consensus 111 ~~~~~~~~~L~PGG~la~Q 129 (252)
T PRK01683 111 ELFPHLVSLLAPQGVLAVQ 129 (252)
T ss_pred HHHHHHHHHCCCCCEEEEE
T ss_conf 9999999824878799998
No 140
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=88.66 E-value=1.6 Score=23.30 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=40.1
Q ss_pred HHCCCCCCEEEECCCCCH--HHHHHHHHHCC--EEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 852899888998688851--79999998098--1699972899999999999630568
Q gi|254780466|r 218 VSSTKPGDIILDPFFGSG--TSGAVAKKLRR--SFIGIEMKQDYIDIATKRIASVQPL 271 (375)
Q Consensus 218 ~~~S~~gDiVLDPF~GSG--TT~~aA~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~~~ 271 (375)
...-.+|+.|||.-++-| ||.+|+..-++ .-+.+|.++.-.+....++++.--.
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~ 208 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR 208 (355)
T ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 7199997968880799976999999966899876997449878999999999971998
No 141
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=88.55 E-value=2 Score=22.78 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=42.6
Q ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 9998528998889986888517999999809-81699972899999999999630
Q gi|254780466|r 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 215 riI~~~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
+.+...+ +|.-|||.|+=||.-+++|..-| +.-+.+|+++.+++.|++-.+--
T Consensus 116 ~~~~~~~-~g~rvLn~Fsytg~fsv~A~~~GA~~v~~vD~S~~al~~a~~N~~lN 169 (286)
T pfam10672 116 RWVQENA-KGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLSKGRDNHRLN 169 (286)
T ss_pred HHHHHHC-CCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 9999872-89832531147869999987679877999919889999999999976
No 142
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=88.47 E-value=0.8 Score=25.14 Aligned_cols=134 Identities=15% Similarity=0.163 Sum_probs=74.1
Q ss_pred CEEEECCCCCHHHHHH----HHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 8899868885179999----998098169997289999999999963056876563024443337755234698828658
Q gi|254780466|r 225 DIILDPFFGSGTSGAV----AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300 (375)
Q Consensus 225 DiVLDPF~GSGTT~~a----A~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~rvpfg~lie~g~l~ 300 (375)
-.+|| -|+|..++- |...|-+|||.|+|+..++.|++-++.-..+ ...+++...+ =...|+.|.++
T Consensus 67 v~gLD--IGtGAscIYPLLg~~~y~W~fvgtDId~~sl~~A~~nv~~N~~L-~~~I~l~~q~-------~~~~if~gii~ 136 (254)
T pfam05971 67 RRALD--IGTGANCIYPLLGVTEYGWRFVGSEVDPQSLNSAKAIVEANPNL-SDAIELRRQP-------QSTLIFNGLIG 136 (254)
T ss_pred CEEEE--ECCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-HHCEEEEECC-------CCCCCCCCCCC
T ss_conf 46777--33664157775404004863797627989999999999858332-3116999637-------81102234468
Q ss_pred CCCEEE---------CCCCCEE----EEE----------CCCCCEEE-CCEECCHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 776576---------6898069----998----------15981786-98653199999874498100671146797599
Q gi|254780466|r 301 PGQILT---------NAQGNIS----ATV----------CADGTLIS-GTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356 (375)
Q Consensus 301 ~g~~L~---------~~~~~~~----a~v----------~~DG~l~~-~~~~gsIh~i~a~~~~~~~cNGw~fw~~~~~~ 356 (375)
+++.+. ++..+.. .+. -++--|.+ |++..=|.+|-..=.. .-.--.|+----|
T Consensus 137 ~~e~fdftmCNPPF~~S~~ea~~~~~rk~~~~~p~~~f~G~~~El~~~GGE~~Fi~rMI~ES~~---~~~~v~WfTsmvg 213 (254)
T pfam05971 137 ENERYDFTLCNPPFHASLAEAKGGSSRKPGRPPPSLNFGGQIAELWCEGGEAAFIKKMIEESLQ---FAKQVRWFTTLVS 213 (254)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH---HCCCCEEECCCCC
T ss_conf 7660666303798667888887776446678997303567530667468459999999999998---6447579831366
Q ss_pred EEEEHHHHHHHHHHH
Q ss_conf 571299999999987
Q gi|254780466|r 357 ELHSINTLRILVRKE 371 (375)
Q Consensus 357 ~~~~id~lR~~~r~~ 371 (375)
+..++..|+..+++.
T Consensus 214 Kks~l~~l~~~L~~~ 228 (254)
T pfam05971 214 KGCNLPPLKEELRIL 228 (254)
T ss_pred CCCCHHHHHHHHHHC
T ss_conf 621499999999976
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=88.45 E-value=0.52 Score=26.31 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=32.9
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCE---EEE-CCCCCCCC-------CCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98972841471189847787615587133367851---300-13443577-------89899999889999999986396
Q gi|254780466|r 30 SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL---VDA-VTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKP 98 (375)
Q Consensus 30 ~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~---~~~-~~d~wd~~-------~s~~~Y~~f~~~wl~e~~RvLK~ 98 (375)
+-|+.-..-.|..|+--|||-.+-+..-..+-+.+ .++ +-+.|.+. ..++.|..-+ .-+-..+++
T Consensus 939 erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira~----RwasDri~d 1014 (1518)
T COG4889 939 ERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRAI----RWASDRIKD 1014 (1518)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHHHHHHHH----HHHHHHCCC
T ss_conf 8998613785499917998765656767655455662278899998720221202342589999999----987653156
Q ss_pred CCEE-EE
Q ss_conf 8729-99
Q gi|254780466|r 99 NGTL-WV 104 (375)
Q Consensus 99 ~Gsi-~v 104 (375)
+|.+ ||
T Consensus 1015 ~GVigFV 1021 (1518)
T COG4889 1015 NGVIGFV 1021 (1518)
T ss_pred CCEEEEE
T ss_conf 8559999
No 144
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=88.38 E-value=1.8 Score=22.96 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCCCEEEEE-CCHHHHHHHHHHHHH
Q ss_conf 9999999863968729998-346888999987640
Q gi|254780466|r 87 AWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQN 120 (375)
Q Consensus 87 ~wl~e~~RvLK~~Gsi~v~-~~~~~i~~i~~~l~~ 120 (375)
..|.|++|+|||+|.+.+- ....+.+.+..+.+.
T Consensus 121 ~~l~e~~rvLkPgG~l~fst~g~~tl~ELr~a~~~ 155 (251)
T PRK10258 121 TALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA 155 (251)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999996458994999981575768999999998
No 145
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=88.29 E-value=1.2 Score=24.08 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=33.0
Q ss_pred EECCCCCHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 98688851799999980--981699972899999999999630568
Q gi|254780466|r 228 LDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASVQPL 271 (375)
Q Consensus 228 LDPF~GSGTT~~aA~~l--gR~~IGiE~~~~Y~~~a~~Rl~~~~~~ 271 (375)
||-=||+|..+....+. +-+.+|+|+++..++.|++|+......
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~ 46 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLL 46 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 9886337999999998789988999859889999999999871345
No 146
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.09 E-value=0.31 Score=27.67 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=10.2
Q ss_pred HHHHHCCCCCCCEEEECCC
Q ss_conf 9897284147118984778
Q gi|254780466|r 30 SVLEKLPAKSVDLIFADPP 48 (375)
Q Consensus 30 ~~l~~Lpd~sVDlI~tDPP 48 (375)
++++.||.+- .+.+|=
T Consensus 18 ~i~~~lP~~~---~y~EPF 33 (274)
T COG0338 18 QIIPHLPEGV---SYIEPF 33 (274)
T ss_pred HHHHHCCCCC---EEECCC
T ss_conf 9998588876---163776
No 147
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=87.99 E-value=1.4 Score=23.65 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=16.0
Q ss_pred CCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHH
Q ss_conf 8889986888517999999809-816999728999999999996
Q gi|254780466|r 224 GDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 224 gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
++.|||-=||-|--+.=-...+ ..++|+|++++-++-|.+|..
T Consensus 64 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vgiDis~~sI~~A~~RY~ 107 (327)
T pfam03291 64 KRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYN 107 (327)
T ss_pred CCEEEEECCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 98799836866445788974798689996689999999999999
No 148
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=87.88 E-value=2.2 Score=22.47 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=47.1
Q ss_pred HHHHHHHHHHC-CCCCCEEEECCCCCHHHH-HHHHHHCC--EEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 89999999852-899888998688851799-99998098--16999728999999999996305
Q gi|254780466|r 210 EALLSRILVSS-TKPGDIILDPFFGSGTSG-AVAKKLRR--SFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 210 ~~LleriI~~~-S~~gDiVLDPF~GSGTT~-~aA~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
..+.-+++.+. -++||.|||-=+|||-.+ +.|+-.|- +-+++|++++-++.|++++++..
T Consensus 59 P~~~a~ml~~L~l~~g~~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~ 122 (205)
T pfam01135 59 PHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLG 122 (205)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 8999999997078999989996699659999999983878769998358999999999999848
No 149
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=87.74 E-value=1.9 Score=22.81 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=33.8
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 70851725998972841471189847787615587133367851300134435778989999988999999998639687
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~G 100 (375)
-++.++|+-.+|.+. ...+|.|=.|| |+ |... +|+.+.+-++.+|
T Consensus 103 ~~v~~~dAn~lm~~~-~~~fD~IDlDP-fG--------------------------Sp~p-------flDsAi~~v~~~G 147 (376)
T PRK04338 103 AEVFNEDANVLLHEN-ERKFDVVDIDP-FG--------------------------SPAP-------FLDSAIRALRRGG 147 (376)
T ss_pred EEEECCCHHHHHHHC-CCCCCEEEECC-CC--------------------------CCCH-------HHHHHHHHHHCCC
T ss_conf 698132489999837-87587786789-99--------------------------9208-------7999999840398
Q ss_pred EEEEE
Q ss_conf 29998
Q gi|254780466|r 101 TLWVI 105 (375)
Q Consensus 101 si~v~ 105 (375)
-++|-
T Consensus 148 lL~vT 152 (376)
T PRK04338 148 LLCVT 152 (376)
T ss_pred EEEEE
T ss_conf 89999
No 150
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=87.72 E-value=0.64 Score=25.74 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCEEEECCCCCHHHHH----HHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 8889986888517999----999809816999728999999999996305687656302444333775523469882865
Q gi|254780466|r 224 GDIILDPFFGSGTSGA----VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299 (375)
Q Consensus 224 gDiVLDPF~GSGTT~~----aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~rvpfg~lie~g~l 299 (375)
.-.+|| .|+|..++ .|...|-+|||.|+|+..++.|++-+++-.. ....+++-. .+=...|+.|.|
T Consensus 118 ~v~gLD--IGtGAncIYPLLG~~~ygW~fvgtDId~~sl~~A~~~v~~N~~-L~~~I~lr~-------q~~~~~If~gii 187 (326)
T PRK11727 118 NVRVLD--IGVGANCIYPIIGVQEYGWRFVGSDIDPQALASAQAIISANPG-LNGAIRLRL-------QKDSKAIFKGII 187 (326)
T ss_pred CCEEEE--CCCCCCEEEEECCCEECCCEEEEECCCHHHHHHHHHHHHHCCC-CCCCEEEEE-------CCCHHHHHCCCC
T ss_conf 723675--0567431121014300176379961798999999999984820-105279996-------278676532458
Q ss_pred CCCCEEEC---------CC--------CCEE----EEEC----------CCCCEEE-CCEECCHHHHHHHHCCCCCCCCE
Q ss_conf 87765766---------89--------8069----9981----------5981786-98653199999874498100671
Q gi|254780466|r 300 QPGQILTN---------AQ--------GNIS----ATVC----------ADGTLIS-GTELGSIHRVGAKVSGSETCNGW 347 (375)
Q Consensus 300 ~~g~~L~~---------~~--------~~~~----a~v~----------~DG~l~~-~~~~gsIh~i~a~~~~~~~cNGw 347 (375)
++++.+.. +. +++. .+.. .+.-|.+ |++..=|.+|-..=... -.-
T Consensus 188 ~~~e~fdftmCNPPF~~S~eea~~gt~Rk~~nl~~~~~~~~~~~lnfgG~~~EL~c~GGE~~FI~rMI~ES~~~---~~~ 264 (326)
T PRK11727 188 HKNERFDLTLCNPPFHASAAEARAGSERKLRNLGKNKPKAAKPVLNFGGQNAELWCEGGEVAFIKKMIEESVAF---AKQ 264 (326)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH---HCC
T ss_conf 87665777851898767899997420454432033678888764245776424784683899999999999987---307
Q ss_pred EEEEEEECCEEEEHHHHHHHHHHH
Q ss_conf 146797599571299999999987
Q gi|254780466|r 348 NFWYFEKLGELHSINTLRILVRKE 371 (375)
Q Consensus 348 ~fw~~~~~~~~~~id~lR~~~r~~ 371 (375)
-.|+----++..++..|+..+++.
T Consensus 265 v~WfTslvgKksnL~~l~~~L~~~ 288 (326)
T PRK11727 265 VLWFTSLVSKKENLPPLYRALKKV 288 (326)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 489830135620399999999976
No 151
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=87.19 E-value=2.1 Score=22.62 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=54.4
Q ss_pred CEECCCHHHHHHHCC-CC--CCCE---EEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 085172599897284-14--7118---98477876155871333678513001344357789899999889999999986
Q gi|254780466|r 22 KIIKGNSISVLEKLP-AK--SVDL---IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95 (375)
Q Consensus 22 kI~~GDcl~~l~~Lp-d~--sVDl---I~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~Rv 95 (375)
+|++||+.+++..+. ++ ++.- .|-||=. ..+-. .-++ .+ ...|.+..++
T Consensus 82 ~~L~~DA~~l~~~~~~~~PP~l~k~f~~FPDPW~--KkRH~-----KRR~--------------~~----~~Fl~~~~~~ 136 (216)
T TIGR00091 82 HVLCGDANELLEKFFPDGPPSLSKVFLNFPDPWP--KKRHN-----KRRI--------------TQ----PHFLKEVANV 136 (216)
T ss_pred HHHHCCHHHHHHHHHCCCCCCEEEEEEECCCCCH--HHHHC-----CCCC--------------CC----HHHHHHHHHH
T ss_conf 5221360232045400789804568887788951--02102-----2342--------------56----7899999997
Q ss_pred CCCCCEEEEECCHHHHHH--HHHHHHHC-CCCEEEEEEEECCCC
Q ss_conf 396872999834688899--99876405-786012468731567
Q gi|254780466|r 96 LKPNGTLWVIGSYHNIFR--IGTMLQNL-NFWILNDIVWRKSNP 136 (375)
Q Consensus 96 LK~~Gsi~v~~~~~~i~~--i~~~l~~~-gf~~~n~IIW~K~n~ 136 (375)
|+++|.|.+.+|+...|. +..+.+.. .|.......|.-.+|
T Consensus 137 L~~~G~i~~~TD~~~lfE~mL~~l~~~~q~f~~~~~~~dl~~~~ 180 (216)
T TIGR00091 137 LKKGGVIELKTDNEPLFEDMLKVLSENDQLFVIISKNTDLNNSP 180 (216)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 04596899970784678999999965364124521002225577
No 152
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=86.96 E-value=1.5 Score=23.43 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCH-HHHCCCCCCCC---
Q ss_conf 18999999985289988899868885179999998098169997289999999999963056876-56302444333---
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN-IELTVLTGKRT--- 284 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~-~~~~~~~~~~~--- 284 (375)
-..++++|=+--+-+|-.|||-=||+|---+-=-+-|-+-.++||++.-++.|++|.+...+.++ .++++-+....
T Consensus 40 ~~~~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~~~G 119 (224)
T TIGR02021 40 REKLLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESLELG 119 (224)
T ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCC
T ss_conf 99999854678898767777558893154498884798686623768999999862100210167003545304441389
Q ss_pred --CCCCCHHHHH
Q ss_conf --7755234698
Q gi|254780466|r 285 --EPRVAFNLLV 294 (375)
Q Consensus 285 --~~rvpfg~li 294 (375)
=-.|.|..||
T Consensus 120 ~fD~VV~mDvlI 131 (224)
T TIGR02021 120 KFDAVVAMDVLI 131 (224)
T ss_pred CCCEEEEEHHHH
T ss_conf 855567521223
No 153
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.24 E-value=1.3 Score=23.79 Aligned_cols=31 Identities=26% Similarity=0.601 Sum_probs=21.8
Q ss_pred HHCCCEECCCHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 5327085172599897284147118984778761
Q gi|254780466|r 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL 51 (375)
Q Consensus 18 ~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni 51 (375)
.--|++++.|.-++.++|. .|+++.|||||.
T Consensus 185 ~~~nkv~qeDaN~LikkI~---~DilYLDpPYN~ 215 (330)
T COG3392 185 LNANKVYQEDANELIKKIS---GDILYLDPPYNA 215 (330)
T ss_pred CCCCHHHHHHHHHHHHHCC---CCEEEECCCCCC
T ss_conf 5510677655999998447---777984799665
No 154
>PRK06202 hypothetical protein; Provisional
Probab=86.20 E-value=2.7 Score=21.90 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=36.8
Q ss_pred CCCEEEECCCCCHHHHHHHHHHCC------EEEEEEECHHHHHHHHHHHHH
Q ss_conf 988899868885179999998098------169997289999999999963
Q gi|254780466|r 223 PGDIILDPFFGSGTSGAVAKKLRR------SFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 223 ~gDiVLDPF~GSGTT~~aA~~lgR------~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
.-=-|||-=||+|.++.+--+.+| +.+|||+++.+++.|+.+-+.
T Consensus 61 r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~ 111 (233)
T PRK06202 61 RPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARR 111 (233)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCC
T ss_conf 872899834787579999999997559963899977988999999873403
No 155
>KOG4300 consensus
Probab=86.11 E-value=0.84 Score=25.03 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=10.3
Q ss_pred HHHHHHHHHCCCCCEEEE
Q ss_conf 999999986396872999
Q gi|254780466|r 87 AWLLACRRVLKPNGTLWV 104 (375)
Q Consensus 87 ~wl~e~~RvLK~~Gsi~v 104 (375)
+-|.|.+|+|+|+|.|++
T Consensus 163 k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300 163 KQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred HHHHHHHHHCCCCCEEEE
T ss_conf 999998875088958999
No 156
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=86.06 E-value=2.8 Score=21.85 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 899888998688851799999980981699972899999999999630
Q gi|254780466|r 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 221 S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
.-.|--|||-=||.|.......++|-+-.|||.+++.+++|+.|-++.
T Consensus 46 ~l~G~~ILDVGCGgG~lse~LAr~Ga~VtGID~S~~~I~~Ar~ha~~~ 93 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGATVTGIDASEENIEVARLHALES 93 (233)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 668998999755897112899967997999879989999999985644
No 157
>KOG2899 consensus
Probab=85.93 E-value=2.2 Score=22.54 Aligned_cols=52 Identities=23% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHCCCCCCEEEECCCCCHHH-HHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 85289988899868885179-99999809-816999728999999999996305
Q gi|254780466|r 218 VSSTKPGDIILDPFFGSGTS-GAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 218 ~~~S~~gDiVLDPF~GSGTT-~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
...-.++-.+||-=|-||+. +..|+..| |.-+|+|||+--++-|.+-|+...
T Consensus 53 ~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~ 106 (288)
T KOG2899 53 EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPC 106 (288)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCC
T ss_conf 542247620575067754658999986064334676156899999997356601
No 158
>KOG3045 consensus
Probab=85.93 E-value=1.3 Score=23.92 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHH
Q ss_conf 18999999985289988899868885179
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTS 237 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT 237 (375)
|+..+-+-|..-. ..-+|.|.=||-+--
T Consensus 167 Pld~ii~~ik~r~-~~~vIaD~GCGEaki 194 (325)
T KOG3045 167 PLDVIIRKIKRRP-KNIVIADFGCGEAKI 194 (325)
T ss_pred HHHHHHHHHHHCC-CCEEEEECCCCHHHH
T ss_conf 2999999997176-764788536642333
No 159
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=85.62 E-value=2.8 Score=21.87 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCCCCCEEEECCCCCHHHH-HHHHHHC--CEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 2899888998688851799-9999809--816999728999999999996305
Q gi|254780466|r 220 STKPGDIILDPFFGSGTSG-AVAKKLR--RSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 220 ~S~~gDiVLDPF~GSGTT~-~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
--.+|+.|||-.+|-|.=. ..|..++ -.-+.+|+++.-++...+++++..
T Consensus 81 ~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g 133 (277)
T pfam01189 81 NPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLG 133 (277)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 88999989883678881699999875898779983797899999999999759
No 160
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=85.42 E-value=3 Score=21.67 Aligned_cols=65 Identities=29% Similarity=0.327 Sum_probs=49.9
Q ss_pred CCCCCCCHHHHHHHHHHC-CCCCCEEEECCCCCHHHH-HHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 368778189999999852-899888998688851799-9999809816999728999999999996305
Q gi|254780466|r 203 LHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~-S~~gDiVLDPF~GSGTT~-~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
+.-+| ..=+.+++... -.||+-|||-=||=|+.+ .||++.|-+..|+-++++=++.|++|++...
T Consensus 148 Le~AQ--~~Kl~~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~~g~~VtgiTlS~eQ~~~a~~r~~gl~ 214 (383)
T PRK11705 148 LEEAQ--EAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLP 214 (383)
T ss_pred HHHHH--HHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 99999--99999999864899999798857874999999999749759998588999999999973898
No 161
>pfam11149 DUF2924 Protein of unknown function (DUF2924). This bacterial family of proteins has no known function.
Probab=85.25 E-value=1.7 Score=23.18 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=44.0
Q ss_pred CCCCCCCCEEECC--CCCEEEEECCCCCEEECC-EECCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 2865877657668--980699981598178698-65319999987449810067114679
Q gi|254780466|r 296 RGLIQPGQILTNA--QGNISATVCADGTLISGT-ELGSIHRVGAKVSGSETCNGWNFWYF 352 (375)
Q Consensus 296 ~g~l~~g~~L~~~--~~~~~a~v~~DG~l~~~~-~~gsIh~i~a~~~~~~~cNGw~fw~~ 352 (375)
...+.||+.|.-. -..+..+|.+|| ..+++ .-.|.-.||-++.|. ..||+-||-.
T Consensus 78 ~~~~~pGT~LvRew~G~~h~V~V~~dG-f~~~G~~y~SLSaiAr~ITGt-~WsGp~FFGL 135 (136)
T pfam11149 78 DRLLVPGTRLVREWKGVEHRVTVLADG-FEYEGRTYKSLSAVARAITGT-RWNGPRFFGL 135 (136)
T ss_pred CCCCCCCCEEEEEECCEEEEEEEECCC-EEECCCCCCCHHHHHHHHHCC-CCCCCCCCCC
T ss_conf 567899877999889978999995796-678992346699999998579-7577303144
No 162
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=85.16 E-value=3.1 Score=21.59 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHH
Q ss_conf 687781899999998528998889986888517999999809816999728999999
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~ 260 (375)
|-.+-...|.+.+=.....+|.-||=|-||.+--+..-...|.+-||+|+++..++.
T Consensus 18 h~~~vnp~L~~~~~~L~~~~~~rVlVPlCGKs~Dm~wLa~~G~~VvGvEls~~Av~~ 74 (218)
T PRK13255 18 HQDEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQ 74 (218)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECHHHHHHH
T ss_conf 579999799999996087889869994898677699998489726998352999999
No 163
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=85.09 E-value=2.8 Score=21.82 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=33.0
Q ss_pred EECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8517259989728414711898477876155871333678513001344357789899999889999999986396
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~ 98 (375)
+|+||-=+.|...+|+|+|.||-+= +.++ .+-+.+.|+|+.||=+.
T Consensus 67 VIq~Dld~GL~~F~D~~FD~ViLsQ-----------------------------TLQa-~~Np~~iL~EmLRvg~~ 112 (205)
T TIGR02081 67 VIQGDLDEGLEAFPDKSFDYVILSQ-----------------------------TLQA-TRNPEEILDEMLRVGRR 112 (205)
T ss_pred EECCCCCCCCCCCCCCCCCEEEECH-----------------------------HHHH-HHCHHHHHHHHHHHCCE
T ss_conf 1300600340116788766254213-----------------------------5664-22568999887767385
No 164
>KOG3191 consensus
Probab=85.02 E-value=3.1 Score=21.55 Aligned_cols=95 Identities=19% Similarity=0.321 Sum_probs=54.7
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf 99897284147118984778761558713336785130013443577898999998899999999863968729998346
Q gi|254780466|r 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108 (375)
Q Consensus 29 l~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~~~ 108 (375)
.+++..|..+|||+++--|||=..-....- ..+....|--..+- -+-+...+...-.+|++.|.+|+.+.-
T Consensus 100 tdl~~~l~~~~VDvLvfNPPYVpt~~~~i~------~~~i~~a~aGG~~G---r~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191 100 TDLLSGLRNESVDVLVFNPPYVPTSDEEIG------DEGIASAWAGGKDG---REVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCCH------HHHHHHHHHCCCCH---HHHHHHHHHHHHHHCCCCCEEEEEEHH
T ss_conf 257766332773089978996769854420------67788887457541---789998876404442867437763013
Q ss_pred HH-HHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 88-899998764057860124687315
Q gi|254780466|r 109 HN-IFRIGTMLQNLNFWILNDIVWRKS 134 (375)
Q Consensus 109 ~~-i~~i~~~l~~~gf~~~n~IIW~K~ 134 (375)
.| ...+-.+|+..|| ...++|...
T Consensus 171 ~N~p~ei~k~l~~~g~--~~~~~~~Rk 195 (209)
T KOG3191 171 ANKPKEILKILEKKGY--GVRIAMQRK 195 (209)
T ss_pred HCCHHHHHHHHHHCCC--CEEEEEEEE
T ss_conf 0597999998743365--306888874
No 165
>COG4725 IME4 Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]
Probab=84.96 E-value=2 Score=22.71 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=45.1
Q ss_pred HHHCCCCCEEEEECC-HHHHHHHHHHHHHCCCCEEEEEEEECCCCCC----CCCCCCCCCCHHHHHHHHCCC
Q ss_conf 986396872999834-6888999987640578601246873156777----757751765402132210056
Q gi|254780466|r 93 RRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP----NFRGRRFQNAHETLIWASPSP 159 (375)
Q Consensus 93 ~RvLK~~Gsi~v~~~-~~~i~~i~~~l~~~gf~~~n~IIW~K~n~~p----n~~g~r~~~~hE~iiw~~K~~ 159 (375)
..+...+|-||+... .|-++.+.+ |+.-||.+++.+.|.|++..- -..|..+.++.|.++.+.++.
T Consensus 50 ~~L~d~g~~i~lw~T~~hl~~~~ec-L~~WGf~~ks~~~W~Ktt~~G~kv~~GtGhwlr~S~Eh~~vg~~GN 120 (198)
T COG4725 50 GQLADMGCLIYLWATAPHLAFTVEC-LKAWGFEYKSFMAWRKTTAAGRKVRMGTGHWLRTSGEHVFVGTLGN 120 (198)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHH-HHHHCCCEEEEEEEEEECCCCCEEEEECCEEECCCCCEEEEEECCC
T ss_conf 6762077589999437488999999-9871833057887765325673688402246517771799996388
No 166
>KOG2097 consensus
Probab=84.93 E-value=3.2 Score=21.53 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=58.7
Q ss_pred HHHHHCCCCCEEEEECCHHHHH-HHHHHHHHCCCCEEEEEEEECCC---CCCCCCC---CCCCCCHHHHHHHHCCCCCCC
Q ss_conf 9998639687299983468889-99987640578601246873156---7777577---517654021322100566665
Q gi|254780466|r 91 ACRRVLKPNGTLWVIGSYHNIF-RIGTMLQNLNFWILNDIVWRKSN---PMPNFRG---RRFQNAHETLIWASPSPKAKG 163 (375)
Q Consensus 91 e~~RvLK~~Gsi~v~~~~~~i~-~i~~~l~~~gf~~~n~IIW~K~n---~~pn~~g---~r~~~~hE~iiw~~K~~~~k~ 163 (375)
.+-++..+-+.+|++++--... ....-+..-||.--.+|.|.|+| |.|...- +-|....|.++.+-|+.-.+
T Consensus 196 ~id~iaa~psFlFlW~gs~egl~lgrnclkkwgfRRcEdicwvktnk~np~ptl~~d~ktvfqrtkeHClMgIkGTVrR- 274 (397)
T KOG2097 196 PIDEIAAKPSFLFLWCGSGEGLDLGRNCLKKWGFRRCEDICWVKTNKNNPGPTLDLDPKTVFQRTKEHCLMGIKGTVRR- 274 (397)
T ss_pred CHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE-
T ss_conf 5666416885399992683568888999988544221015788636789997657784999998877653302214773-
Q ss_pred CEECCCCCCCCCCC-EEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 02341001123798-010465-422102585414577875336877818999999985289988899868
Q gi|254780466|r 164 YTFNYDALKAANED-VQMRSD-WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231 (375)
Q Consensus 164 y~fny~~~k~~n~~-~~~~s~-w~~pi~~g~er~k~~~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF 231 (375)
..++ ...-++ -.+-| ......-.++||+++ .|||+.++- |---|--|
T Consensus 275 ----------STDGh~IHaNVDtDliI---------~ee~~~gn~~kP~~i-yrIiEhF~l-grRRLhlf 323 (397)
T KOG2097 275 ----------STDGHFIHANVDTDLII---------EEEPETGNGEKPSEI-YRIIEHFCL-GRRRLHLF 323 (397)
T ss_pred ----------CCCCCEEEEECCCCEEE---------ECCCCCCCCCCHHHH-HHHHHHHHC-CEEEEEEC
T ss_conf ----------36886587304542376---------315776887670999-999998730-20135531
No 167
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=84.20 E-value=2.7 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=16.3
Q ss_pred EECCCHHHH-HHHCCCCCCCEEEECCCC
Q ss_conf 851725998-972841471189847787
Q gi|254780466|r 23 IIKGNSISV-LEKLPAKSVDLIFADPPY 49 (375)
Q Consensus 23 I~~GDcl~~-l~~Lpd~sVDlI~tDPPY 49 (375)
.++||..++ .+.+| .||+++..||-
T Consensus 45 ~~~~Di~~~~~~~~~--~~Dvl~ggpPC 70 (319)
T pfam00145 45 VPIGDITLIDIKDIP--DIDILTGGFPC 70 (319)
T ss_pred CCCCCCCCCCHHHCC--CCCEEEECCCC
T ss_conf 961775408874788--86889868999
No 168
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=83.89 E-value=3.5 Score=21.25 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=55.8
Q ss_pred EECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 85172599897284147118984778761558713336785130013443577898999998899999999863968729
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi 102 (375)
+.+.|...+-+.+ .+++|-|+.|.|-- + -++.|.+-. ....|.. .+...+....++.|..+.+.||++|.+
T Consensus 168 vt~~d~~~~~~~~-~~~FD~ILvDaPCS-G--~G~~rk~p~----~~~~w~~-~~~~~~~~~Q~~iL~~A~~~LkpGG~L 238 (471)
T PRK11933 168 LTHFDGRVFGAAL-PEMFDAILLDAPCS-G--EGTVRKDPD----ALKNWSP-ESNLEIAATQRELIESAFHALKPGGTL 238 (471)
T ss_pred EEECCHHHHHHHC-CCCCCEEEECCCCC-C--CEEECCCHH----HHHCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9935866740323-01066799878888-8--733555975----7641898-799999999999999999873889689
Q ss_pred -EEECCH---HHHHHHHHHHHHCCC
Q ss_conf -998346---888999987640578
Q gi|254780466|r 103 -WVIGSY---HNIFRIGTMLQNLNF 123 (375)
Q Consensus 103 -~v~~~~---~~i~~i~~~l~~~gf 123 (375)
|--|++ .|---|..+|++.+-
T Consensus 239 VYSTCT~~peENE~vv~~~l~~~p~ 263 (471)
T PRK11933 239 VYSTCTLNREENQAVCLWLKETYGD 263 (471)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9981799956679999999986886
No 169
>KOG1663 consensus
Probab=83.17 E-value=3.1 Score=21.56 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=45.4
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-HHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 8999999985289988899868885179999-998098169997289999999999963
Q gi|254780466|r 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 210 ~~LleriI~~~S~~gDiVLDPF~GSGTT~~a-A~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
..++.-+|+..-.+.-+.+--|.|-+.-+.| |.--+=+.+.||+|+++++++..=++.
T Consensus 62 g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ 120 (237)
T KOG1663 62 GQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL 120 (237)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 79999999985873389981212789999997459996599996186888875999986
No 170
>KOG1661 consensus
Probab=82.64 E-value=1.6 Score=23.39 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=38.6
Q ss_pred HCCCCCCEEEECCCCCHH---HHHHHHHHCCEE---EEEEECHHHHHHHHHHHHHCCCCCH
Q ss_conf 528998889986888517---999999809816---9997289999999999963056876
Q gi|254780466|r 219 SSTKPGDIILDPFFGSGT---SGAVAKKLRRSF---IGIEMKQDYIDIATKRIASVQPLGN 273 (375)
Q Consensus 219 ~~S~~gDiVLDPF~GSGT---T~~aA~~lgR~~---IGiE~~~~Y~~~a~~Rl~~~~~~~~ 273 (375)
-.-.||--.|| .|||| |+.+|.-.|..+ +|||.-++-++.+++-|++--...+
T Consensus 78 ~~L~pG~s~Ld--vGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e 136 (237)
T KOG1661 78 DHLQPGASFLD--VGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSE 136 (237)
T ss_pred HHHCCCCCEEE--CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 86234731013--378740899999999457776651444159999999987776504730
No 171
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=81.57 E-value=4.2 Score=20.78 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=25.1
Q ss_pred HHHHCCCEECCCHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 35532708517259989728414711898477876
Q gi|254780466|r 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50 (375)
Q Consensus 16 ~~~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYn 50 (375)
-.++-+.+++||-.++...-....||+++..||-.
T Consensus 39 ~~N~~~~~~~~Di~~~~~~~~~~~vDll~ggpPCQ 73 (275)
T cd00315 39 EANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred HHHCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCC
T ss_conf 98879995258864465321378878898689998
No 172
>KOG2730 consensus
Probab=80.76 E-value=1.7 Score=23.10 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 18999999985289988899868885179999998098169997289999999999963
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
-+.+..++.... .-++|+|-|+|-|--...=-..+-.-|+||+|+.-+..|++-++-
T Consensus 82 a~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaei 138 (263)
T KOG2730 82 AEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEV 138 (263)
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHCCCCHHHHHHHHCCEEEEEECCHHHHHHHHCCCEE
T ss_conf 999987888733--743002545368842889987188079985267888877606503
No 173
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=80.32 E-value=4.8 Score=20.44 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHH-HHHHHH----CCEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 68778189999999852899888998688851799-999980----981699972899999999999630
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKL----RRSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~-~aA~~l----gR~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
|-..--.++.+.+....+.....|||-=||.|.-. ..+..+ +-..+|+|+++..+..|.+|-..+
T Consensus 66 ~y~pl~~~i~~~~~~~~~~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~~~~ 135 (272)
T PRK11088 66 HYQPLRDAVANLLAERLDEKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRYPQV 135 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCC
T ss_conf 8479999999999975677786488815877789999999741157873799811799999996268885
No 174
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=80.11 E-value=2.6 Score=22.02 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=9.7
Q ss_pred HHHHHHHHHCCCCCEEE
Q ss_conf 99999998639687299
Q gi|254780466|r 87 AWLLACRRVLKPNGTLW 103 (375)
Q Consensus 87 ~wl~e~~RvLK~~Gsi~ 103 (375)
..+++++|+|||+|.++
T Consensus 78 ~~l~~~~r~LkpgG~l~ 94 (95)
T pfam08241 78 RALREIARVLKPGGKLV 94 (95)
T ss_pred HHHHHHHHHCCCCEEEE
T ss_conf 99999998778694997
No 175
>PTZ00053 methionine aminopeptidase II; Provisional
Probab=79.67 E-value=1.8 Score=22.97 Aligned_cols=93 Identities=18% Similarity=0.308 Sum_probs=55.7
Q ss_pred CCCCE-EEECCCCCHHHHHHHHHHCCEEEEEEECHHHH----HHHHHHHHHC------CCCCHHHHCCCCCCCCCCCCCH
Q ss_conf 99888-99868885179999998098169997289999----9999999630------5687656302444333775523
Q gi|254780466|r 222 KPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI----DIATKRIASV------QPLGNIELTVLTGKRTEPRVAF 290 (375)
Q Consensus 222 ~~gDi-VLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~----~~a~~Rl~~~------~~~~~~~~~~~~~~~~~~rvpf 290 (375)
.+|++ -.|||+-+|. |.|-......-+...-+..|. ..|++=|..+ -|+..--|.....+|. ...+
T Consensus 313 EEGEVyAIEtF~STG~-G~V~e~~~~s~Y~~~~~~~~~~lrl~~aR~lL~~I~~nF~TLPF~~RwLd~~~~~r~--~l~L 389 (435)
T PTZ00053 313 EEGELFAIETFASTGR-GFVNEDMECSHYMMNPGAEYVPLRLESAQELLKHINKTFSTLAFCRRWLDDDGFDRH--LMNL 389 (435)
T ss_pred CCCCEEEEEEEECCCC-CEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHH--HHHH
T ss_conf 6896699966622786-457438851599977787756566789999999999877988764777754231268--9999
Q ss_pred HHHHHCCCCCCCCEEECCCCCEEEEEC
Q ss_conf 469882865877657668980699981
Q gi|254780466|r 291 NLLVERGLIQPGQILTNAQGNISATVC 317 (375)
Q Consensus 291 g~lie~g~l~~g~~L~~~~~~~~a~v~ 317 (375)
..|+..|.|+|=+.|.+.++.++|+-.
T Consensus 390 ~~Lv~~GiV~~YPpL~d~~G~yVAQfE 416 (435)
T PTZ00053 390 NQLVDAGAVNPYPPLCDVKGSYTSQME 416 (435)
T ss_pred HHHHHCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 999877985238960726999887755
No 176
>KOG1709 consensus
Probab=79.37 E-value=5.1 Score=20.26 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCHH--HHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 9999998528998889986888517--99999980981699972899999999999630568
Q gi|254780466|r 212 LLSRILVSSTKPGDIILDPFFGSGT--SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271 (375)
Q Consensus 212 LleriI~~~S~~gDiVLDPF~GSGT--T~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~ 271 (375)
+++..-.+.+-+|.-||.-=+|-|- |.+.+..--++|| ||.+++-+ +|+..-.+-
T Consensus 90 iMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~----krmr~~gw~ 146 (271)
T KOG1709 90 IMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVL----KRMRDWGWR 146 (271)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEE-EECCHHHH----HHHHHCCCC
T ss_conf 9999999986179648984231677888886359863178-73597899----999863665
No 177
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=78.61 E-value=2.9 Score=21.72 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=38.7
Q ss_pred CCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHH
Q ss_conf 9888998688851799999980981699972899999999999
Q gi|254780466|r 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265 (375)
Q Consensus 223 ~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl 265 (375)
..|++.|-=+|||--.++|.+---+-|.||+||.-+..|.+.|
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred HHHCEEECCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCC
T ss_conf 6410563468863288988753202788741807877765057
No 178
>KOG1975 consensus
Probab=78.52 E-value=3.6 Score=21.20 Aligned_cols=52 Identities=31% Similarity=0.339 Sum_probs=18.6
Q ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHH
Q ss_conf 998528998889986888517999999809-8169997289999999999963
Q gi|254780466|r 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 216 iI~~~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
||..+++++|-|+|-=||-|--+.-=.+-| -.+||+||.+--++-|++|-++
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrd 162 (389)
T KOG1975 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRD 162 (389)
T ss_pred HHHHHHCCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHH
T ss_conf 99998612230000056776207676551456357653434009999999999
No 179
>KOG3420 consensus
Probab=77.73 E-value=5.1 Score=20.26 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=49.2
Q ss_pred CCCCCC--HHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 687781--899999998528-998889986888517999999809-8169997289999999999963056
Q gi|254780466|r 204 HPTQKP--EALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQP 270 (375)
Q Consensus 204 HPTqKP--~~LleriI~~~S-~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~ 270 (375)
+||.-- .++++-|=..+- -+|-.++|-=||.|---.++-..+ +-.+|+|++++..+++....+..+-
T Consensus 26 Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420 26 YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHH
T ss_conf 79967899999999986201204746225247611567775057873378640588999998616687523
No 180
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=77.67 E-value=5.6 Score=20.01 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=5.1
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9998764057860
Q gi|254780466|r 113 RIGTMLQNLNFWI 125 (375)
Q Consensus 113 ~i~~~l~~~gf~~ 125 (375)
|+..-+-..||..
T Consensus 70 RLa~Eia~~G~~~ 82 (268)
T pfam07942 70 RLAYELATLGYQV 82 (268)
T ss_pred HHHHHHHHCCCEE
T ss_conf 7899987256468
No 181
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=77.61 E-value=5.8 Score=19.93 Aligned_cols=48 Identities=25% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCCCCCCCCCHHHHCC-----CEECCCHHHH-HHHCCCCCCCEEEECCCCCCCC
Q ss_conf 3202333243355327-----0851725998-9728414711898477876155
Q gi|254780466|r 6 SLAINENQNSIFEWKD-----KIIKGNSISV-LEKLPAKSVDLIFADPPYNLQL 53 (375)
Q Consensus 6 ~~~~~~~~~~~~~~~n-----kI~~GDcl~~-l~~Lpd~sVDlI~tDPPYni~~ 53 (375)
++...|.+......+. .|++||.+.. +..+.++..-.|+.-.|||+..
T Consensus 63 ~v~aiEiD~~l~~~L~~~~~~~ii~~D~L~~~~~~~~~~~~~~vvgNLPY~Iss 116 (267)
T PRK00274 63 KVTAIEIDRDLAPILRETDNLTIIEGDALKVDLEELAEGQPLKVVANLPYNIST 116 (267)
T ss_pred CEEEEECCHHHHHHHHHCCCEEEEECHHHHCCHHHHCCCCCEEEEECCCCHHHH
T ss_conf 058863688999998504786999650664786774567872799558830312
No 182
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=77.43 E-value=5.8 Score=19.90 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=42.6
Q ss_pred CCCCCC-EEEECCCCCHHHHH-HHHHHCC--EEEEEEECHHHHHHHHHHHHHCCCCCH
Q ss_conf 289988-89986888517999-9998098--169997289999999999963056876
Q gi|254780466|r 220 STKPGD-IILDPFFGSGTSGA-VAKKLRR--SFIGIEMKQDYIDIATKRIASVQPLGN 273 (375)
Q Consensus 220 ~S~~gD-iVLDPF~GSGTT~~-aA~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~~~~~ 273 (375)
--.+|| +++|==+||||-.+ ||+..++ +-+++|.++++++++.+-.++.--+.+
T Consensus 16 ~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~ 73 (135)
T TIGR02469 16 RLRPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSN 73 (135)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 7899994688960574838999997359860799985376898799999998289996
No 183
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=76.91 E-value=4.5 Score=20.58 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=41.1
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 998889986888517999999809816999728999999999996
Q gi|254780466|r 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 222 ~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
-+|--|||-=||-|.-.....++|-+-.|+|++++-++.|+..=.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~ 102 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHAL 102 (243)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 777708874588328649999779946974387677899987544
No 184
>PRK06148 hypothetical protein; Provisional
Probab=76.90 E-value=2 Score=22.77 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHH-HHHHHHCCEE
Q ss_conf 368778189999999852899888998688851799-9999809816
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSF 248 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~-~aA~~lgR~~ 248 (375)
.||+| ++|.||+.......-+.|+ |+-|||.+ .+|.+|-|.|
T Consensus 663 ~~~~~--~~lAerL~~~~P~~l~~vf--F~NSGSEAnE~AiKlAr~~ 705 (1015)
T PRK06148 663 LHDAI--VAYAERLTATLPEGLTVAS--FVNSGSEANSLALRLARAH 705 (1015)
T ss_pred CCCHH--HHHHHHHHHHCCCCCCEEE--ECCCHHHHHHHHHHHHHHH
T ss_conf 68369--9999999984777765576--3077388999999999986
No 185
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family; InterPro: IPR014329 Members of this entry are the m6-adenine DNA methyltransferase protein, or a fusion protein that also carries m5 cytosine methyltransferase activity of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A type II restriction endonuclease always accompanies a methyltransferase of this type from Alw26I/Eco31I/Esp3I(IPR014328 from INTERPRO) and by an adenine-specific modification methyltransferase. Members of this are unusual in that the regions of similarity to homologues outside this family are circularly permuted..
Probab=76.70 E-value=1.7 Score=23.22 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999863968729998
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWVI 105 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v~ 105 (375)
+-.+..|.++.+++|.+-++
T Consensus 208 r~~~~~~~~~~~~~G~v~i~ 227 (603)
T TIGR02987 208 RVGEEISLELVKKNGLVSIV 227 (603)
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999873459879996
No 186
>PRK13946 shikimate kinase; Provisional
Probab=75.62 E-value=4.4 Score=20.68 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=23.9
Q ss_pred HHHHHHCCCCCCEEEECCCCCHHHHH---HHHHHCCEEEEEE
Q ss_conf 99998528998889986888517999---9998098169997
Q gi|254780466|r 214 SRILVSSTKPGDIILDPFFGSGTSGA---VAKKLRRSFIGIE 252 (375)
Q Consensus 214 eriI~~~S~~gDiVLDPF~GSGTT~~---aA~~lgR~~IGiE 252 (375)
+.|+- .-.+.-|||=-|||||=|.+ .|+.||+.|+=.|
T Consensus 12 ~~~~~-~l~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~D 52 (195)
T PRK13946 12 EQIRA-ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 52 (195)
T ss_pred HHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 99999-858995899899999889999999999797989885
No 187
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=75.09 E-value=3.6 Score=21.18 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCC--CCCHH-HHCCCCCCC
Q ss_conf 781899999998528998889986888517999999809816999728999999999996305--68765-630244433
Q gi|254780466|r 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ--PLGNI-ELTVLTGKR 283 (375)
Q Consensus 207 qKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~--~~~~~-~~~~~~~~~ 283 (375)
+-|+.|-++|-.+-.-+=..+||-=||||-|+.+-..+--+--|++|++..++.|.++=--.. .-+-. .+...+..|
T Consensus 109 ~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 109 SVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 61899999997515776202344266767662767888865127762699999988624157888989998755226776
Q ss_pred C-----CCCCCH-HHH-----HHCCCCCCCCEEECC
Q ss_conf 3-----775523-469-----882865877657668
Q gi|254780466|r 284 T-----EPRVAF-NLL-----VERGLIQPGQILTNA 308 (375)
Q Consensus 284 ~-----~~rvpf-g~l-----ie~g~l~~g~~L~~~ 308 (375)
. .-+.|+ |.| .-.+.|.||..|-.+
T Consensus 189 ~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 189 FDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 430124567886400346899999855898648987
No 188
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=74.66 E-value=6.9 Score=19.45 Aligned_cols=75 Identities=21% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC-H--HHHHHHH
Q ss_conf 711898477876155871333678513001344357789899999889999999986396872999834-6--8889999
Q gi|254780466|r 39 SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-Y--HNIFRIG 115 (375)
Q Consensus 39 sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~~-~--~~i~~i~ 115 (375)
--||||+|-|-+.+..+.. .-++..+.|.-..++...+++..+|+.+..|.+.+ +|+.|. | |.+-++.
T Consensus 146 ~adLvFiDqPvGTGfS~a~------~~e~~~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~---~~L~GESYgg~yip~~A 216 (498)
T COG2939 146 FADLVFIDQPVGTGFSRAL------GDEKKKDFEGAGKDVYSFLRLFFDKFPHYARLLSP---KFLAGESYGGHYIPVFA 216 (498)
T ss_pred CCCEEEEECCCCCCCCCCC------CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCC---EEEEECCCCCHHHHHHH
T ss_conf 7756997167666745455------42112231002112999999999998987650476---06730452102568999
Q ss_pred HHHHHCC
Q ss_conf 8764057
Q gi|254780466|r 116 TMLQNLN 122 (375)
Q Consensus 116 ~~l~~~g 122 (375)
..+++.+
T Consensus 217 ~~L~~~~ 223 (498)
T COG2939 217 HELLEDN 223 (498)
T ss_pred HHHHHHC
T ss_conf 9998722
No 189
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.56 E-value=3.4 Score=21.34 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=72.7
Q ss_pred EEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCC--CCHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 899868885179999998098169997289999999999963056--876563024443337755234698828658776
Q gi|254780466|r 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303 (375)
Q Consensus 226 iVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~--~~~~~~~~~~~~~~~~rvpfg~lie~g~l~~g~ 303 (375)
+|=-.-||+|-..+.|.+-|-.-+..|++++.++-+.+|+.+.-. +....++........-|+.+.... .-+.--+
T Consensus 314 ViGaG~MG~gIA~~~a~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~--~~~~~~D 391 (706)
T PRK11154 314 VLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDY--RGFKHAD 391 (706)
T ss_pred EECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCH--HHHCCCC
T ss_conf 98647323899999999869879999799999999999889999999861899989999986224100441--2315688
Q ss_pred EEECC-------CCCEEE---EECCCCCEE-ECCEECCHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 57668-------980699---981598178-6986531999998744981006711467975
Q gi|254780466|r 304 ILTNA-------QGNISA---TVCADGTLI-SGTELGSIHRVGAKVSGSETCNGWNFWYFEK 354 (375)
Q Consensus 304 ~L~~~-------~~~~~a---~v~~DG~l~-~~~~~gsIh~i~a~~~~~~~cNGw~fw~~~~ 354 (375)
..+.+ |+...+ .+.+.++++ ++-...||..+++.++.-+.+-|-.|+.=-.
T Consensus 392 lVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~i~~la~~~~rP~r~iG~HFfnP~~ 453 (706)
T PRK11154 392 LVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVE 453 (706)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 79997145288899999999964798858950676776899998647841045544257744
No 190
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=74.40 E-value=7 Score=19.41 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=44.3
Q ss_pred HHHHHHHH-CCCCCCEEEECCCCCHHHH-HHHHHHCCE--EEEEEECHHHHHHHHHHHHHCC
Q ss_conf 99999985-2899888998688851799-999980981--6999728999999999996305
Q gi|254780466|r 212 LLSRILVS-STKPGDIILDPFFGSGTSG-AVAKKLRRS--FIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 212 LleriI~~-~S~~gDiVLDPF~GSGTT~-~aA~~lgR~--~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
+..++++. --.+|+.||+-=.|||=.+ +.|+-.|+. -+++|++++.++.|+++|++..
T Consensus 63 iVA~MlElL~l~pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG 124 (317)
T PRK13943 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG 124 (317)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCC
T ss_conf 99999997178999868996577438999999984878759999867999999999999779
No 191
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=74.06 E-value=7.2 Score=19.36 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=41.6
Q ss_pred HHHCCCEECCCHHHHHHH-CCCCC-CCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 553270851725998972-84147-1189847787615587133367851300134435778989999988999999998
Q gi|254780466|r 17 FEWKDKIIKGNSISVLEK-LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94 (375)
Q Consensus 17 ~~~~nkI~~GDcl~~l~~-Lpd~s-VDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~R 94 (375)
-+..-++..+|-...++. ||... =-+|++||||-. -+||..-.. -+.+.++
T Consensus 132 ~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~--------------------------~~eY~rvv~-~l~~~~k 184 (279)
T COG2961 132 GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL--------------------------KDEYQRVVE-ALAEAYK 184 (279)
T ss_pred CCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCCCCC--------------------------CCHHHHHHH-HHHHHHH
T ss_conf 7841478834718888621899776258995898666--------------------------217999999-9999998
Q ss_pred HCCCCCEEEE---ECCHHHHHHHHHHHHHCCC
Q ss_conf 6396872999---8346888999987640578
Q gi|254780466|r 95 VLKPNGTLWV---IGSYHNIFRIGTMLQNLNF 123 (375)
Q Consensus 95 vLK~~Gsi~v---~~~~~~i~~i~~~l~~~gf 123 (375)
-. ++|+..+ +-+-+.+-++...|+.+|.
T Consensus 185 Rf-~~g~yaiWYPik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 185 RF-ATGTYAIWYPIKDRRQIRRFLRALEALGI 215 (279)
T ss_pred HH-CCCEEEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 62-48659999760034899999999763485
No 192
>KOG2356 consensus
Probab=73.39 E-value=2.6 Score=22.04 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=54.8
Q ss_pred CCCEECCCH--HHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 270851725--998972841471189847787615587133367851300134435778989999988999999998639
Q gi|254780466|r 20 KDKIIKGNS--ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97 (375)
Q Consensus 20 ~nkI~~GDc--l~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK 97 (375)
+-..+.||. ++.+...-+...|||++|||+-.+ ...| +....+ .+..-|+.- .-.-..+.
T Consensus 163 kSsF~~gDv~~~~qll~~H~llpdlIIiDPPW~NK---SVkR---s~~Ysm-------lsnl~ql~~-----IPI~kl~~ 224 (366)
T KOG2356 163 KSSFHVGDVKDIEQLLRAHDLLPDLIIIDPPWFNK---SVKR---SRTYSM-------LSNLLQLLD-----IPIIKLHD 224 (366)
T ss_pred CCCEECCCHHHHHHHHHHHHHCCCEEEECCCCCCC---CCCC---CCCEEC-------CCCHHHHHC-----CCCHHHCC
T ss_conf 55021153777888757776368769967998774---3241---224000-------252466640-----87044338
Q ss_pred CCCEEEEECCHHHHH---HHHHHHHHCCCCEEEEEEEECCCC----CCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 687299983468889---999876405786012468731567----7775775176540213221005
Q gi|254780466|r 98 PNGTLWVIGSYHNIF---RIGTMLQNLNFWILNDIVWRKSNP----MPNFRGRRFQNAHETLIWASPS 158 (375)
Q Consensus 98 ~~Gsi~v~~~~~~i~---~i~~~l~~~gf~~~n~IIW~K~n~----~pn~~g~r~~~~hE~iiw~~K~ 158 (375)
+.|-+.++|.-...| .....+..-+..+...--|-|-.. +-.|.-..-...+|.++.+.++
T Consensus 225 p~~lvA~WcTNrqkhi~f~k~eLf~kWnl~lv~tw~wlKitt~gepv~d~~~~~~k~P~E~L~~a~~s 292 (366)
T KOG2356 225 PLCLVAFWCTNRQKHIEFEKIELFDKWNLELVATWKWLKITTQGEPVYDFDNQKHKVPFESLMLAKKS 292 (366)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCHHHHCCCCHHHHHHHHCC
T ss_conf 77059999718188899999998876265427788899961578715683032004768887641013
No 193
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=73.03 E-value=7.6 Score=19.21 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 18999999985289988899868885179999998098169997289999999999963
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
...|.+..=.....++.-||=|-||.|--+..=.+.|..-+|+|+++..++.+.++...
T Consensus 8 np~L~~~~~~l~~~~~~rvlVPlCGks~D~~wLa~~G~~VvGvels~~Av~~ff~e~~~ 66 (203)
T pfam05724 8 NPLLVRHWDALNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVEISELAVEKFFAEANL 66 (203)
T ss_pred CHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf 97999999863899998899968998599999983898489995679999999997378
No 194
>PRK00131 aroK shikimate kinase; Reviewed
Probab=72.79 E-value=4.8 Score=20.41 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=8.7
Q ss_pred EEEECCCCCHHHHHH---HHHHCCEEE
Q ss_conf 899868885179999---998098169
Q gi|254780466|r 226 IILDPFFGSGTSGAV---AKKLRRSFI 249 (375)
Q Consensus 226 iVLDPF~GSGTT~~a---A~~lgR~~I 249 (375)
|||--|+|||-|-++ |++||..||
T Consensus 7 I~liG~~GsGKTtvgk~LA~~L~~~fi 33 (175)
T PRK00131 7 IVLIGMMGAGKSTIGRLLAKRLGYEFI 33 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 898889999989999999999596902
No 195
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=71.98 E-value=8 Score=19.06 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=13.4
Q ss_pred CCHHHHCCCEECCCHHHHHHHCCCCCCCEEEECCC
Q ss_conf 43355327085172599897284147118984778
Q gi|254780466|r 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48 (375)
Q Consensus 14 ~~~~~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPP 48 (375)
++..|=+-++++.|..++++.-.+ ..|.|+.|-|
T Consensus 341 ~sf~dpRv~Vv~dDAf~wlr~a~~-~fD~vIVDl~ 374 (508)
T COG4262 341 GSFSDPRVTVVNDDAFQWLRTAAD-MFDVVIVDLP 374 (508)
T ss_pred CCCCCCEEEEEECCHHHHHHHHCC-CCCEEEEECC
T ss_conf 776687569996547889974134-5557999689
No 196
>PRK13948 shikimate kinase; Provisional
Probab=71.84 E-value=4.5 Score=20.61 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=11.3
Q ss_pred EEEECCCCCHHHHH---HHHHHCCEEEE
Q ss_conf 89986888517999---99980981699
Q gi|254780466|r 226 IILDPFFGSGTSGA---VAKKLRRSFIG 250 (375)
Q Consensus 226 iVLDPF~GSGTT~~---aA~~lgR~~IG 250 (375)
|||=-|||||=|.+ .|++||..||=
T Consensus 13 IvLIG~mGsGKStiGk~LA~~l~~~fiD 40 (182)
T PRK13948 13 VALAGFMGTGKSRIGWELSRALALHFVD 40 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 8988999998899999999996959888
No 197
>KOG3010 consensus
Probab=71.41 E-value=8.3 Score=18.98 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCCC-EEEEEC
Q ss_conf 999999998639687-299983
Q gi|254780466|r 86 RAWLLACRRVLKPNG-TLWVIG 106 (375)
Q Consensus 86 ~~wl~e~~RvLK~~G-si~v~~ 106 (375)
.....+++||||++| .|.|++
T Consensus 116 e~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010 116 ERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred HHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9999999998077897799997
No 198
>pfam04378 DUF519 Protein of unknown function (DUF519). Bacterial family of unknown function, possibly secreted.
Probab=71.35 E-value=8.3 Score=18.97 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=44.3
Q ss_pred HCCCEECCCHHHHHHH-CCC-CCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 3270851725998972-841-47118984778761558713336785130013443577898999998899999999863
Q gi|254780466|r 19 WKDKIIKGNSISVLEK-LPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96 (375)
Q Consensus 19 ~~nkI~~GDcl~~l~~-Lpd-~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvL 96 (375)
-+=++++.|..+.++. +|. +.=-||++||||- .-+||..-.. -+.++++--
T Consensus 103 ~~v~v~~~DG~~~l~a~lPP~~rRglVLIDPpYE--------------------------~k~ey~~v~~-~l~~a~~r~ 155 (245)
T pfam04378 103 RRVRVHQADGFAALKAFLPPKERRGLVLIDPPFE--------------------------LKDEYQRVVA-ALREAYKRW 155 (245)
T ss_pred CCCEEEECCHHHHHHHHCCCCCCCEEEEECCCCC--------------------------CHHHHHHHHH-HHHHHHHHC
T ss_conf 7657993658999996689977867999679866--------------------------6569999999-999999857
Q ss_pred CCCCEEEEE---CCHHHHHHHHHHHHHCCC
Q ss_conf 968729998---346888999987640578
Q gi|254780466|r 97 KPNGTLWVI---GSYHNIFRIGTMLQNLNF 123 (375)
Q Consensus 97 K~~Gsi~v~---~~~~~i~~i~~~l~~~gf 123 (375)
++|++.|+ -+-..+-++...|.+.|.
T Consensus 156 -~~g~y~iWYPi~~~~~~~~~~~~l~~~~~ 184 (245)
T pfam04378 156 -PTGIYAIWYPIKDRRQVKRFYRALEGTGI 184 (245)
T ss_pred -CCCEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf -88379999655874999999999985389
No 199
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=71.21 E-value=8.4 Score=18.95 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=15.0
Q ss_pred HHHHHHHHHHC----CCCCCEEEECCCCCHHHHH
Q ss_conf 89999999852----8998889986888517999
Q gi|254780466|r 210 EALLSRILVSS----TKPGDIILDPFFGSGTSGA 239 (375)
Q Consensus 210 ~~LleriI~~~----S~~gDiVLDPF~GSGTT~~ 239 (375)
.+|.+..+..+ .+.|..|+=-|.|.+....
T Consensus 141 ~~L~~~al~~a~~~Lk~gG~fv~K~F~G~~~~~~ 174 (209)
T PRK11188 141 MYLVELALDMCRQVLAPGGSFVVKVFQGEGFDEY 174 (209)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHH
T ss_conf 9999999999998626798899999648799999
No 200
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=70.09 E-value=4.1 Score=20.84 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=6.5
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|-+.
T Consensus 364 ~V~dVRG~GL~~ 375 (454)
T PRK06931 364 CIGNVRGRGLMI 375 (454)
T ss_pred CEEEECCCCEEE
T ss_conf 888631374489
No 201
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=69.60 E-value=9.1 Score=18.74 Aligned_cols=26 Identities=27% Similarity=0.754 Sum_probs=16.0
Q ss_pred CEECCCHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 085172599897284147118984778761
Q gi|254780466|r 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL 51 (375)
Q Consensus 22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni 51 (375)
.|++||.|+. .+| .++.|+.--||||
T Consensus 90 ~ii~~D~Lk~--d~~--~~~~vVaNLPY~I 115 (296)
T PTZ00338 90 QVIEGDALKT--EFP--YFDVCVANVPYQI 115 (296)
T ss_pred EEECCHHHHC--CCC--CCCEEEECCCCHH
T ss_conf 5770505318--564--1144663587044
No 202
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=69.37 E-value=2.3 Score=22.34 Aligned_cols=48 Identities=23% Similarity=0.068 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 9999999986396872999834688899998764057860124687315677
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~~~l~~~gf~~~n~IIW~K~n~~ 137 (375)
++.+.+.-++++++.-|.-.+|.-.+..+...++.- -..+.-|.-||.
T Consensus 101 ~~lf~~l~~~~~~~~IlaSNTSsl~is~ia~~~~~p----~R~ig~HffnP~ 148 (291)
T PRK06035 101 RKVFAELERNVSPETIIASNTSGIMIAEIATALERK----DRFIGMHWFNPA 148 (291)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCC----HHEEEECCCCCC
T ss_conf 999999996589983798608877869999765994----223641126870
No 203
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=68.79 E-value=6.6 Score=19.58 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=50.7
Q ss_pred EEEECCCCCHHHHHHHH-HH------CCEEEEEEECHHHHHHHHHHHHHC-------CCCCHHHHCCCCCCCC-------
Q ss_conf 89986888517999999-80------981699972899999999999630-------5687656302444333-------
Q gi|254780466|r 226 IILDPFFGSGTSGAVAK-KL------RRSFIGIEMKQDYIDIATKRIASV-------QPLGNIELTVLTGKRT------- 284 (375)
Q Consensus 226 iVLDPF~GSGTT~~aA~-~l------gR~~IGiE~~~~Y~~~a~~Rl~~~-------~~~~~~~~~~~~~~~~------- 284 (375)
-.=|-|||-|=-|.=|- .+ .-.-.||||+.+.+-.|++-=+.. +.+|...+.....+..
T Consensus 240 ~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~~PeLVlVN 319 (386)
T TIGR02085 240 QMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAESVPELVLVN 319 (386)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 03201046541278998987641589704431343778999999999873533210454457999986236889657767
Q ss_pred CCCCCHHHHHHC--CCCCCCCEEECCC
Q ss_conf 775523469882--8658776576689
Q gi|254780466|r 285 EPRVAFNLLVER--GLIQPGQILTNAQ 309 (375)
Q Consensus 285 ~~rvpfg~lie~--g~l~~g~~L~~~~ 309 (375)
+||=..|.=+-. .-+.|.=+||++-
T Consensus 320 PPRRGiG~eL~~~L~~~aP~fILYSSC 346 (386)
T TIGR02085 320 PPRRGIGKELCDYLSQLAPKFILYSSC 346 (386)
T ss_pred CCCCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 888887606899997508862662167
No 204
>PRK00625 shikimate kinase; Provisional
Probab=67.49 E-value=6 Score=19.84 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=16.9
Q ss_pred EEEECCCCCHHHHH---HHHHHCCEEEEEE
Q ss_conf 89986888517999---9998098169997
Q gi|254780466|r 226 IILDPFFGSGTSGA---VAKKLRRSFIGIE 252 (375)
Q Consensus 226 iVLDPF~GSGTT~~---aA~~lgR~~IGiE 252 (375)
+||=-|||||-|.+ .|++||+.|+-.|
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l~~~FvD~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 999899999889999999999399957749
No 205
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=67.15 E-value=10 Score=18.43 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 6877818999999985289988899868885179999998098169997289999999999963
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
++..-++++- .+|+.....| .|-+.|.+++...|+++|-+++-++..++-+..|.+.=.+
T Consensus 104 ~~~~~~~e~~-~~i~~l~~~G---~~vvVG~~~~~~~A~~~Gl~~vli~sg~eSI~~A~~eA~~ 163 (169)
T pfam06506 104 RAYQSEEEAR-AAVKELKAQG---IKVIVGDGLVCDLAEQAGLQGVLIYSGKESVREAFEEALE 163 (169)
T ss_pred EEECCHHHHH-HHHHHHHHCC---CEEEECCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 9966889999-9999999869---9599858289999998399579996678999999999999
No 206
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=66.81 E-value=6.9 Score=19.45 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHH
Q ss_conf 818999999985
Q gi|254780466|r 208 KPEALLSRILVS 219 (375)
Q Consensus 208 KP~~LleriI~~ 219 (375)
.|++..+.||..
T Consensus 156 ~~~~i~~~Il~~ 167 (172)
T PRK03731 156 PPSQVVSEILSA 167 (172)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999998
No 207
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.59 E-value=5.7 Score=19.96 Aligned_cols=33 Identities=6% Similarity=-0.150 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 999999998639687299983468889999876
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~~~l 118 (375)
.+.+.+.-++++++.-|.-.+|.-.+..+...+
T Consensus 100 ~~lf~~le~~~~~~~IlaSNTSsl~it~la~~~ 132 (288)
T PRK08293 100 GDFYEQLAEVAPEKTIFATNSSTLLPSQFADAT 132 (288)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHC
T ss_conf 999999997467766998668767657998861
No 208
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=66.17 E-value=11 Score=18.31 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 189999999852899888998688851799
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTSG 238 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT~ 238 (375)
++.++++++. .|.+.||-.+|.-..+
T Consensus 133 ~~~~~~r~~~----~g~~~l~l~~gd~~~~ 158 (252)
T COG4121 133 ATYGCAAAVR----HGLLLLGLVIGDAGDG 158 (252)
T ss_pred CCCHHHHHHH----CCHHEEEEEEEEHHHC
T ss_conf 3313477642----1211120573014313
No 209
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=65.83 E-value=11 Score=18.32 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 89999999852899888998688851799999980--9816999728999999999996305687656302
Q gi|254780466|r 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278 (375)
Q Consensus 210 ~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l--gR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~ 278 (375)
..+..+++...++. .-++..=|.-|--+.|=++| +-..-|+|+++.+++.+++.+........+-+..
T Consensus 31 ~~~f~~~l~~~~~i-kSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~lk~~~~~~~i~n~SIld~ 100 (204)
T TIGR03587 31 LAMFARALNRLPKI-ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP 100 (204)
T ss_pred HHHHHHHHHCCCCC-CEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 99999998357888-82689668847769999874874404999539999999986589726996533466
No 210
>KOG1562 consensus
Probab=65.18 E-value=11 Score=18.20 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=42.2
Q ss_pred CCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 70851725998972841471189847787615587133367851300134435778989999988999999998639687
Q gi|254780466|r 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100 (375)
Q Consensus 21 nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~G 100 (375)
=+|.-||....|+.++.+..|.|+||--=- -..+-..|.+..+..+.+-||++|
T Consensus 177 v~l~iGDG~~fl~~~~~~~~dVii~dssdp--------------------------vgpa~~lf~~~~~~~v~~aLk~dg 230 (337)
T KOG1562 177 VKLLIGDGFLFLEDLKENPFDVIITDSSDP--------------------------VGPACALFQKPYFGLVLDALKGDG 230 (337)
T ss_pred EEEEECCHHHHHHHHCCCCCEEEEEECCCC--------------------------CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 489955689999870369741899716776--------------------------755889888889999998517992
Q ss_pred EEEEECC
Q ss_conf 2999834
Q gi|254780466|r 101 TLWVIGS 107 (375)
Q Consensus 101 si~v~~~ 107 (375)
.++..++
T Consensus 231 v~~~q~e 237 (337)
T KOG1562 231 VVCTQGE 237 (337)
T ss_pred EEEEECC
T ss_conf 7997323
No 211
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=64.84 E-value=7.6 Score=19.21 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 899999998528-99888998688851799999980981699972899999999999630
Q gi|254780466|r 210 EALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 210 ~~LleriI~~~S-~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
.+.++.++.... +--.+++.|..|+|-. +--.++|++..++--++-
T Consensus 188 ~~~~e~~~~~~~~~iAAvi~EPi~~~~G~-------------i~p~~~yL~~lr~lc~~~ 234 (433)
T PRK00615 188 SQIFHEVMEQLGHRVAGVIFEPICANMGV-------------VLPKPGFIEGIIQTCRRF 234 (433)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCCCC-------------CCCCHHHHHHHHHHHHHC
T ss_conf 99999999851543035787550246887-------------689989999999998765
No 212
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=64.84 E-value=8.7 Score=18.85 Aligned_cols=41 Identities=27% Similarity=0.163 Sum_probs=32.2
Q ss_pred ECCCCCH----HHHHHHHHHCCEEE--EEEECHHHHHHHHHHHHHCC
Q ss_conf 8688851----79999998098169--99728999999999996305
Q gi|254780466|r 229 DPFFGSG----TSGAVAKKLRRSFI--GIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 229 DPF~GSG----TT~~aA~~lgR~~I--GiE~~~~Y~~~a~~Rl~~~~ 269 (375)
=.|.||| |+.+-|...+-+.+ ++|+|++..++|++=+...-
T Consensus 125 vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g 171 (277)
T pfam03059 125 IAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDP 171 (277)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 89963788613899998850887314331278899999999998655
No 213
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=64.32 E-value=3.9 Score=20.96 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=20.3
Q ss_pred HHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 9999999852-89988899868885179999998098169997289999999999963
Q gi|254780466|r 211 ALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 211 ~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+-++.++... ..-.-+|+.|-.|.+ -.++|++..++-..+
T Consensus 175 ~~le~~~~~~~~~iAAvIvEPi~g~~-----------------p~~~fl~~lr~lc~~ 215 (431)
T PRK06209 175 ASLEALFEDYPGRIACVILEPATADE-----------------PQDNFLHEVQRLCHE 215 (431)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCC-----------------CCHHHHHHHHHHHHH
T ss_conf 99999876455666788850313778-----------------978999999999987
No 214
>pfam04952 AstE_AspA Succinylglutamate desuccinylase / Aspartoacylase family. This family includes Succinylglutamate desuccinylase EC:3.1.-.- that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. The family also include aspartoacylase EC:3.5.1.15 which cleaves acylaspartate into a fatty acid and aspartate. Mutations in human aspartoacylase (ACY-2) lead to Canavan disease. This family is probably structurally related to pfam00246 (Bateman A pers. obs.).
Probab=64.22 E-value=12 Score=18.08 Aligned_cols=119 Identities=21% Similarity=0.214 Sum_probs=76.2
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEE------CHHHHHHHHHHHHHCC----CCCHH----HHC-
Q ss_conf 99999852899888998688851799999980981699972------8999999999996305----68765----630-
Q gi|254780466|r 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM------KQDYIDIATKRIASVQ----PLGNI----ELT- 277 (375)
Q Consensus 213 leriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~------~~~Y~~~a~~Rl~~~~----~~~~~----~~~- 277 (375)
..++..++-- .-++++--.++|+...+|.+.|...+.+|+ +++.++...+-+.++- -+..+ ...
T Consensus 129 ~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~g~~~it~E~G~~~~~~~~~~~~~~~gi~~~L~~lg~~~~~~~~~~~~~ 207 (289)
T pfam04952 129 LLALLKAFGL-PAVLLHNKPSAGFLDFAAEEAGAPAITLELGGAGVLGADLISRTAAGVLNVLRHIGVVAGGLTFEPLQL 207 (289)
T ss_pred HHHHHHHCCC-CEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9999998598-979996699973278999974986899985788663999999999999999998088368878776652
Q ss_pred -----CCCCCCC---------CCCCCHHHHHHCCCCCCCCEEECCCCCEEEEECC--CCCEEECCEECCHH
Q ss_conf -----2444333---------7755234698828658776576689806999815--98178698653199
Q gi|254780466|r 278 -----VLTGKRT---------EPRVAFNLLVERGLIQPGQILTNAQGNISATVCA--DGTLISGTELGSIH 332 (375)
Q Consensus 278 -----~~~~~~~---------~~rvpfg~lie~g~l~~g~~L~~~~~~~~a~v~~--DG~l~~~~~~gsIh 332 (375)
.....+. ++++.+|.-|+.|-+-++..+++.-+.....+++ ||.+++-.....++
T Consensus 208 ~~~~~~~~~~~~~~a~~~Gl~~~~~~~g~~V~~G~~l~~~~i~d~~~~~~~~~~ap~dG~i~~~~~~~~v~ 278 (289)
T pfam04952 208 YRVLRTIDRPRDIRAEAAGLVEPHVNLGDDVEAGDLLPGGHVFDSLGGESIEYRAPDTGIIVFINEAAYVG 278 (289)
T ss_pred EEEEEEECCCEECCCCCCEEEEEECCCCCCEECCCCCCCCEEECCCCCCEEEEEECCCEEEEEECCCCEEC
T ss_conf 36666503641303776469999427899662786417730216999936999928999999956866456
No 215
>KOG2940 consensus
Probab=64.12 E-value=4.4 Score=20.66 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=33.8
Q ss_pred HHCCCCCC-CEEEECCCCCCCCCCCEECCCCCE--EEECCCCC-CCCCC--HH-----HHHHHH---HHHHHHHHHHCCC
Q ss_conf 72841471-189847787615587133367851--30013443-57789--89-----999988---9999999986396
Q gi|254780466|r 33 EKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSL--VDAVTDSW-DKFSS--FE-----AYDAFT---RAWLLACRRVLKP 98 (375)
Q Consensus 33 ~~Lpd~sV-DlI~tDPPYni~~~~~~~~~~~s~--~~~~~d~w-d~~~s--~~-----~Y~~f~---~~wl~e~~RvLK~ 98 (375)
.+|-.++| .+|.+|--|.+-..-... .|.+. ..-+.|+. -.|.. ++ --+.|+ -.|+..|+-.|||
T Consensus 88 rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKP 166 (325)
T KOG2940 88 RHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKP 166 (325)
T ss_pred HHHHHCCHHHEEEEECCHHHHHHHHCC-CCCCEEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 887752513406640416799975326-8985379997255101565535011126543345640483689998874289
Q ss_pred CCEEE
Q ss_conf 87299
Q gi|254780466|r 99 NGTLW 103 (375)
Q Consensus 99 ~Gsi~ 103 (375)
+|.+.
T Consensus 167 Dg~Fi 171 (325)
T KOG2940 167 DGLFI 171 (325)
T ss_pred CCCCH
T ss_conf 75121
No 216
>PRK04612 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional
Probab=63.73 E-value=5.6 Score=20.01 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=6.3
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
....||.-|-|.
T Consensus 332 ~i~~vRG~GLm~ 343 (408)
T PRK04612 332 VFAQIRGRGLML 343 (408)
T ss_pred CEEEECCCCEEE
T ss_conf 888322044699
No 217
>PRK09117 consensus
Probab=63.50 E-value=6.3 Score=19.70 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 99999999863968729998346888999987
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~~~ 117 (375)
.+.+.+.-++++++.-+.-.+|.-.+..+...
T Consensus 97 ~~lf~~l~~~~~~~~IlaSNTS~l~i~~ia~~ 128 (282)
T PRK09117 97 LKILKQLDALVGPDAIIATNTSSISITKLAAA 128 (282)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHH
T ss_conf 99999998657998189865876761778876
No 218
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.65 E-value=6.3 Score=19.70 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=10.4
Q ss_pred HHHHHHCCCCC--CCCEEECC
Q ss_conf 34698828658--77657668
Q gi|254780466|r 290 FNLLVERGLIQ--PGQILTNA 308 (375)
Q Consensus 290 fg~lie~g~l~--~g~~L~~~ 308 (375)
+..+|++|.+- -|.=+|+.
T Consensus 261 l~~~v~~G~lG~KsG~GFY~Y 281 (289)
T PRK09260 261 LEKMVKAGRLGRKTGRGVYKY 281 (289)
T ss_pred HHHHHHCCCCCCCCCCEEEEC
T ss_conf 999997899767679763588
No 219
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=61.23 E-value=13 Score=17.75 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=31.8
Q ss_pred EECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 85172599897284147118984778761558713336785130013443577898999998899999999863968729
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi 102 (375)
+.++|+-.+|... .+.+|.|=.|| |+ |... +|..+.+.++.+|-+
T Consensus 105 ~~~~DAn~lm~~~-~~~fD~IDlDP-fG--------------------------Sp~p-------fldsAi~av~~~GlL 149 (375)
T pfam02005 105 INGDDANMLMREN-HRRFDVIDLDP-FG--------------------------SPAP-------FLDSAVQSVKRGGLL 149 (375)
T ss_pred ECHHHHHHHHHHC-CCCCCEEEECC-CC--------------------------CCCH-------HHHHHHHHHCCCCEE
T ss_conf 7547599999855-88675686789-99--------------------------9217-------799999983159889
Q ss_pred EEEC
Q ss_conf 9983
Q gi|254780466|r 103 WVIG 106 (375)
Q Consensus 103 ~v~~ 106 (375)
+|-+
T Consensus 150 ~vTa 153 (375)
T pfam02005 150 CVTA 153 (375)
T ss_pred EEEE
T ss_conf 9994
No 220
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=60.58 E-value=7.4 Score=19.27 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=17.5
Q ss_pred HHHHHCCCCCEEEEECCH-HHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 999863968729998346-888999987640578601246873156
Q gi|254780466|r 91 ACRRVLKPNGTLWVIGSY-HNIFRIGTMLQNLNFWILNDIVWRKSN 135 (375)
Q Consensus 91 e~~RvLK~~Gsi~v~~~~-~~i~~i~~~l~~~gf~~~n~IIW~K~n 135 (375)
...+++..+.++.--|+- -..-.....|++.| .+||-+.+
T Consensus 64 vl~~l~~~~~~ViaTGGG~v~~~enr~~l~~~g-----~vv~L~~~ 104 (172)
T COG0703 64 VLKELLEEDNAVIATGGGAVLSEENRNLLKKRG-----IVVYLDAP 104 (172)
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCC-----EEEEEECC
T ss_conf 999986269959977986116899999998488-----58999699
No 221
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=60.31 E-value=14 Score=17.65 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=45.3
Q ss_pred EECCCHH------HHHHHCCCC--CCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8517259------989728414--71189847787615587133367851300134435778989999988999999998
Q gi|254780466|r 23 IIKGNSI------SVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94 (375)
Q Consensus 23 I~~GDcl------~~l~~Lpd~--sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~R 94 (375)
.|.||-. .++..+|+. .+|.|+.|--=|+ +..|+- ++.-=....+.-|.-|++
T Consensus 78 fi~GDftdee~l~ki~~~~g~dekk~DVV~SDaaP~~-----------------SG~~~i--Dh~Rs~dLv~~aL~ia~~ 138 (192)
T TIGR00438 78 FIRGDFTDEEVLNKILERVGDDEKKVDVVMSDAAPNI-----------------SGIWDI--DHLRSIDLVELALDIAKE 138 (192)
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCC-----------------CCCCCC--CHHHHHHHHHHHHHHHHH
T ss_conf 7544767878999999857898743778985268887-----------------898754--344379999999999999
Q ss_pred HCCCCCEEEE---ECCHHHHHHHHHHHHHCCCCE
Q ss_conf 6396872999---834688899998764057860
Q gi|254780466|r 95 VLKPNGTLWV---IGSYHNIFRIGTMLQNLNFWI 125 (375)
Q Consensus 95 vLK~~Gsi~v---~~~~~~i~~i~~~l~~~gf~~ 125 (375)
||++.|+|.| .|+ .+-..-..++.. |+.
T Consensus 139 vL~~~GnfvvKvFqGe--~~d~y~~e~r~~-F~~ 169 (192)
T TIGR00438 139 VLKPKGNFVVKVFQGE--EIDEYLNELRKL-FEK 169 (192)
T ss_pred HHHCCCCEEEEEEECC--CHHHHHHHHHHC-CCE
T ss_conf 8615898999985374--288999976520-547
No 222
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=59.77 E-value=9.4 Score=18.66 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=4.8
Q ss_pred EEEECCCCCH
Q ss_conf 8998688851
Q gi|254780466|r 226 IILDPFFGSG 235 (375)
Q Consensus 226 iVLDPF~GSG 235 (375)
+++.|..|+|
T Consensus 226 vi~EPiqg~g 235 (457)
T PRK05639 226 LFAEPIQGDA 235 (457)
T ss_pred EEEECCCCCC
T ss_conf 9982766887
No 223
>PRK13947 shikimate kinase; Provisional
Probab=59.57 E-value=11 Score=18.19 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHCCC
Q ss_conf 18999999985289
Q gi|254780466|r 209 PEALLSRILVSSTK 222 (375)
Q Consensus 209 P~~LleriI~~~S~ 222 (375)
|++..+.||.+.-+
T Consensus 154 ~~ei~~~Ii~~~~k 167 (171)
T PRK13947 154 IDEVAEEIIKAYIK 167 (171)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999997
No 224
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=59.52 E-value=14 Score=17.57 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHH
Q ss_conf 687781899999998528998889986888517999999809816999728999999
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~ 260 (375)
|-.+--.-|.+..=....+++..||=|.||-.--..-=...|-+-||+|+++..++.
T Consensus 24 H~~~vnp~L~k~~~~L~~~~~~rVfVPLCGKSlDm~WLa~qG~~VvGvELse~Av~~ 80 (226)
T PRK13256 24 CQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLS 80 (226)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEHHHHHHHH
T ss_conf 645468889999997488999869996788789899999789825643101899999
No 225
>KOG3350 consensus
Probab=59.40 E-value=6.5 Score=19.60 Aligned_cols=48 Identities=25% Similarity=0.471 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEC-CCCC---HHHHHHHHHHCCE---EEEE--EECHHHH
Q ss_conf 687781899999998528998889986-8885---1799999980981---6999--7289999
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDP-FFGS---GTSGAVAKKLRRS---FIGI--EMKQDYI 258 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDP-F~GS---GTT~~aA~~lgR~---~IGi--E~~~~Y~ 258 (375)
||+-.|..|... -+=||.|| |.+- +-|...++.|+|. -|.| |+-++++
T Consensus 124 ~p~dlp~~lk~~-------fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~ 180 (217)
T KOG3350 124 CPLDLPDELKAH-------FDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWA 180 (217)
T ss_pred CCCCCHHHHHHC-------CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf 977777999740-------168971786546166666689999970688539983406768999
No 226
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636 This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process.
Probab=58.89 E-value=7.3 Score=19.32 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCC-EEEEC-CCCCHHHHHHHHHHCCEEEEEEECHHHHHHHH
Q ss_conf 36877818999999985289988-89986-88851799999980981699972899999999
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPGD-IILDP-FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~gD-iVLDP-F~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~ 262 (375)
++|+. .+-|..+=..|-..|= +|+|= =+|-|=||. -......|-|+.||-+.+|+
T Consensus 200 V~pa~--~~fL~a~r~lc~~~~~LLI~DEVQtG~GRTG~---~fA~~Hygse~~PDi~T~AK 256 (402)
T TIGR00707 200 VVPAD--KEFLKALRELCEDKDALLIFDEVQTGLGRTGK---LFAYEHYGSEVEPDIITLAK 256 (402)
T ss_pred CCCCC--HHHHHHHHHHHHHCCEEEEEEEEEECCCCCHH---HHHHHCCCCCCCCHHHHHHH
T ss_conf 33487--78999999998648918999447528774332---23312068845523875405
No 227
>PRK06942 glutamate-1-semialdehyde 2,1-aminomutase; Validated
Probab=58.47 E-value=13 Score=17.83 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=23.7
Q ss_pred HHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 9999999852-89988899868885179999998098169997289999999999963
Q gi|254780466|r 211 ALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 211 ~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+-++.+|... ....-+|+.|..|+|-. +.-.++|++..++-.++
T Consensus 185 ~~l~~~~~~~~~~iAAvI~EPi~g~~G~-------------i~p~~~yl~~lr~lc~~ 229 (425)
T PRK06942 185 AALEEAFAAFGGEIAAVIVEPVAGNMNL-------------VRGTPEFLNALRALCTK 229 (425)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCC-------------CCCCHHHHHHHHHHHCC
T ss_conf 8899999843896689995564477875-------------02898999999998613
No 228
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=57.35 E-value=15 Score=17.35 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=24.8
Q ss_pred HHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHH
Q ss_conf 999999852-899888998688851799999980981699972899999999999
Q gi|254780466|r 212 LLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265 (375)
Q Consensus 212 LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl 265 (375)
++.+|+.+. -.++|.|+.-=.|.|.-...-.+.+.+-+.+|+|+..+..-.+++
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~ 72 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF 72 (259)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHH
T ss_conf 9999998557899986999789877889999960695799996889999999750
No 229
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.75 E-value=4.8 Score=20.42 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=12.6
Q ss_pred HHHHHHCCCCC--CCCEEECCCC
Q ss_conf 34698828658--7765766898
Q gi|254780466|r 290 FNLLVERGLIQ--PGQILTNAQG 310 (375)
Q Consensus 290 fg~lie~g~l~--~g~~L~~~~~ 310 (375)
+..+|++|.+- -|.=+|+.++
T Consensus 263 l~~~v~~G~lG~KsG~GFY~Y~~ 285 (292)
T PRK07530 263 LVKYVEAGWLGRKTGRGFYDYRG 285 (292)
T ss_pred HHHHHHCCCCCCCCCCEEEECCC
T ss_conf 99999779976767974046899
No 230
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=56.50 E-value=9.5 Score=18.61 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=5.9
Q ss_pred CEEEECCCCCH
Q ss_conf 88998688851
Q gi|254780466|r 225 DIILDPFFGSG 235 (375)
Q Consensus 225 DiVLDPF~GSG 235 (375)
.+|+.|..|+|
T Consensus 221 aviiEPiqg~g 231 (445)
T PRK09221 221 AVIVEPMAGSA 231 (445)
T ss_pred EEEECCCCCCC
T ss_conf 99977755778
No 231
>PRK11036 putative metallothionein SmtA; Provisional
Probab=56.08 E-value=16 Score=17.22 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=28.1
Q ss_pred EEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 8998688851799999980981699972899999999999630
Q gi|254780466|r 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 226 iVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
-|||-=+|+|..+..--++|-+-.+||++++.++.|+++.+..
T Consensus 47 rVLDvG~G~G~~a~~lA~~Gh~Vt~~D~S~~mL~~A~~~a~~~ 89 (256)
T PRK11036 47 RVLDAGGGEGQTAIKMAELGHQVTLCDLSAEMIQRAKQAAEAK 89 (256)
T ss_pred EEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 3998379877989999977997998669999999999998864
No 232
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=56.05 E-value=6.5 Score=19.63 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHH
Q ss_conf 9988899868885179999998098169997289999
Q gi|254780466|r 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258 (375)
Q Consensus 222 ~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~ 258 (375)
.-||.-|=--=|-=.+..|++.-.||-+.+++--+|-
T Consensus 343 ~igda~laltdGrtA~~rA~e~~~pNLVLldl~lDys 379 (508)
T TIGR02279 343 QIGDALLALTDGRTASARAIEEARPNLVLLDLVLDYS 379 (508)
T ss_pred EECCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf 7433767622777799999973589839885553203
No 233
>TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765 The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP). UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage.
Probab=56.04 E-value=5.7 Score=19.98 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=48.0
Q ss_pred CCCC--CCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH----C---CEEEEEEECHHHHHHHHHHHHHCCCCCH
Q ss_conf 3687--78189999999852899888998688851799999980----9---8169997289999999999963056876
Q gi|254780466|r 203 LHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL----R---RSFIGIEMKQDYIDIATKRIASVQPLGN 273 (375)
Q Consensus 203 ~HPT--qKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~l----g---R~~IGiE~~~~Y~~~a~~Rl~~~~~~~~ 273 (375)
.+-| =+|..-+.++=...++.--+|+||..=||.|+++|.++ | =+++.+=-.|+ ..+|+++..|--+
T Consensus 107 ~eeTG~l~~~~Yy~KLP~~~~~~~v~v~DPMLATGgt~~~a~~~lk~~g~~~I~~~~~vAAPe----G~~~v~~~hpdV~ 182 (213)
T TIGR01091 107 NEETGELKPVVYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAAPE----GIEAVQKAHPDVD 182 (213)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECHH----HHHHHHHHCCCCE
T ss_conf 699985202532200543468886999728734305899999999853999449999982557----8999998469946
Q ss_pred HHHCCCC
Q ss_conf 5630244
Q gi|254780466|r 274 IELTVLT 280 (375)
Q Consensus 274 ~~~~~~~ 280 (375)
-.....+
T Consensus 183 iytA~iD 189 (213)
T TIGR01091 183 IYTAAID 189 (213)
T ss_pred EEEEEEC
T ss_conf 9999734
No 234
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=55.99 E-value=6.9 Score=19.46 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC--C------EEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 3687781899999998528998889986888517999999809--8------1699972899999999999630568
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR--R------SFIGIEMKQDYIDIATKRIASVQPL 271 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg--R------~~IGiE~~~~Y~~~a~~Rl~~~~~~ 271 (375)
.+-|.+|..-..++=...+..--+|+||..-||.|+++|.+.= | .++.+=-.+ ...+|+.+.-|-
T Consensus 105 deet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAap----eGi~~v~~~~p~ 177 (210)
T COG0035 105 DEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAP----EGIKAVEKAHPD 177 (210)
T ss_pred CCCCCCEEHHHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEECH----HHHHHHHHHCCC
T ss_conf 3766760035875898646885999786141267699999999971897528999999648----999999986899
No 235
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=55.01 E-value=11 Score=18.30 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCC-CCCCEEEECCCCCH
Q ss_conf 899999998528-99888998688851
Q gi|254780466|r 210 EALLSRILVSST-KPGDIILDPFFGSG 235 (375)
Q Consensus 210 ~~LleriI~~~S-~~gDiVLDPF~GSG 235 (375)
++-++++|.... ....+|+.|..|.|
T Consensus 186 ~~~~~~~l~~~~~~iAAvivEPi~g~~ 212 (429)
T PRK00062 186 LEAVKAAFEEYGDEIACVIVEPVAGNM 212 (429)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCC
T ss_conf 888899998568865699974323778
No 236
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=54.01 E-value=9.1 Score=18.75 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=6.3
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
....||.-|-|.
T Consensus 324 ~i~~VRG~Glm~ 335 (397)
T TIGR03246 324 VFSEIRGKGLLI 335 (397)
T ss_pred CEEEEEECCEEE
T ss_conf 877542243599
No 237
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=53.60 E-value=18 Score=16.97 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=22.6
Q ss_pred HHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHH
Q ss_conf 9999999852-899888998688851799999980981-6999728999999999996
Q gi|254780466|r 211 ALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 211 ~LleriI~~~-S~~gDiVLDPF~GSGTT~~aA~~lgR~-~IGiE~~~~Y~~~a~~Rl~ 266 (375)
..+.+|+.+. ..++|.||-==.|.|.-..+-.+.+-+ .++||+|+.+++.-+++..
T Consensus 16 ~~~~~Iv~~~~~~~~~~vlEIGPG~G~LT~~Ll~~~~~~v~aiEiD~~l~~~L~~~~~ 73 (277)
T TIGR00755 16 SVIQKIVEAANVLENDVVLEIGPGLGALTEPLLKRAKKLVTAIEIDPRLAEILRKLLS 73 (277)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCC
T ss_conf 8999999974378997799973882078999998259848999726789999875215
No 238
>PHA02056 putative methyltransferase
Probab=53.04 E-value=18 Score=16.92 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=7.5
Q ss_pred CCCEEEECCCCCHHH
Q ss_conf 988899868885179
Q gi|254780466|r 223 PGDIILDPFFGSGTS 237 (375)
Q Consensus 223 ~gDiVLDPF~GSGTT 237 (375)
+-.+|++|=||--|.
T Consensus 204 qTGl~~~~gCGiDTs 218 (279)
T PHA02056 204 QTGLVTYAGCGIDTS 218 (279)
T ss_pred HCCEEECCCCCCCCE
T ss_conf 447474079774400
No 239
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=52.87 E-value=13 Score=17.86 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=49.9
Q ss_pred CCC-EEEECCCCCHHHHHHHHHHCCEEEEEEECHHH---HHHHHHHHHHC------CCCCHHHHCCCCCCCCCCCCCHHH
Q ss_conf 988-89986888517999999809816999728999---99999999630------568765630244433377552346
Q gi|254780466|r 223 PGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY---IDIATKRIASV------QPLGNIELTVLTGKRTEPRVAFNL 292 (375)
Q Consensus 223 ~gD-iVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y---~~~a~~Rl~~~------~~~~~~~~~~~~~~~~~~rvpfg~ 292 (375)
+|+ .-+|||+.+|. +.+. ...+-.| +-++..+ ...+++=++.+ -|+...-+.....+ .-+.....
T Consensus 177 ~g~v~aIEp~~t~G~-g~v~-~~~~~~i-y~~~~~~~lk~~~~r~~l~~I~~~f~tlPFs~Rwl~~~~~~--~~~~~l~e 251 (291)
T cd01088 177 EGDVYAIEPFATTGK-GYVH-DGPECSI-YMLNRDKPLRLPRARKLLDVIYENFGTLPFARRWLDRLGET--KLLMALKN 251 (291)
T ss_pred CCCEEEEEEEEECCC-CEEE-CCCCEEE-EEECCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHCCHH--HHHHHHHH
T ss_conf 686899855740587-5263-3896158-88625554320778999999986249713100112211235--78999999
Q ss_pred HHHCCCCCCCCEEECCCCCEEEEE------CCCCCEE
Q ss_conf 988286587765766898069998------1598178
Q gi|254780466|r 293 LVERGLIQPGQILTNAQGNISATV------CADGTLI 323 (375)
Q Consensus 293 lie~g~l~~g~~L~~~~~~~~a~v------~~DG~l~ 323 (375)
|+.+|.|.|=+.|.++++..+|+- ..||..+
T Consensus 252 l~~~g~l~~Ypvl~e~~g~~vAQfEhTvlvt~~G~~v 288 (291)
T cd01088 252 LCKAGIVYPYPVLKEISGGYVAQFEHTIIVREDGKEV 288 (291)
T ss_pred HHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCEE
T ss_conf 9865974368714813998898888899998994577
No 240
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=52.35 E-value=14 Score=17.53 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=5.9
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
....||.-|-|.
T Consensus 326 ~i~~VRG~Gl~~ 337 (398)
T PRK03244 326 LVDHVRGRGLLL 337 (398)
T ss_pred CEEEEEEEEEEE
T ss_conf 614100126899
No 241
>KOG2361 consensus
Probab=52.08 E-value=15 Score=17.46 Aligned_cols=11 Identities=36% Similarity=0.196 Sum_probs=6.0
Q ss_pred EEECCCCCEEE
Q ss_conf 99815981786
Q gi|254780466|r 314 ATVCADGTLIS 324 (375)
Q Consensus 314 a~v~~DG~l~~ 324 (375)
..||.||++.+
T Consensus 204 fYVRgDGT~~Y 214 (264)
T KOG2361 204 FYVRGDGTRAY 214 (264)
T ss_pred EEECCCCCEEE
T ss_conf 58816996652
No 242
>PRK06105 aminotransferase; Provisional
Probab=51.72 E-value=19 Score=16.79 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=6.2
Q ss_pred CEEEECCCCCH
Q ss_conf 88998688851
Q gi|254780466|r 225 DIILDPFFGSG 235 (375)
Q Consensus 225 DiVLDPF~GSG 235 (375)
.+|+.|..|+|
T Consensus 221 avIvEPiqg~g 231 (460)
T PRK06105 221 AFIGEPVMGAG 231 (460)
T ss_pred EEEECCCCCCC
T ss_conf 99836724888
No 243
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=51.60 E-value=12 Score=18.00 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=67.1
Q ss_pred EEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCC--CHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 8998688851799999980981699972899999999999630568--76563024443337755234698828658776
Q gi|254780466|r 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL--GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303 (375)
Q Consensus 226 iVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~--~~~~~~~~~~~~~~~rvpfg~lie~g~l~~g~ 303 (375)
+|=--.||+|-.. ++..-|-.-+..|++++.++.+.+|+.+.-.- ....++.........|+...... .-+..-+
T Consensus 318 ViGaG~MG~GIA~-~~a~aG~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~l~ri~~~~~~--~~l~~~D 394 (715)
T PRK11730 318 VLGAGIMGGGIAY-QSASKGVPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGVLSTITPTLDY--AGFKDVD 394 (715)
T ss_pred EECCCCCHHHHHH-HHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC--HHHCCCC
T ss_conf 9787710799999-999579957999789999999999999999999864899879999999568741540--2433588
Q ss_pred EEECC-------CCCEEE---EECCCCCEEE-CCEECCHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 57668-------980699---9815981786-98653199999874498100671146797
Q gi|254780466|r 304 ILTNA-------QGNISA---TVCADGTLIS-GTELGSIHRVGAKVSGSETCNGWNFWYFE 353 (375)
Q Consensus 304 ~L~~~-------~~~~~a---~v~~DG~l~~-~~~~gsIh~i~a~~~~~~~cNGw~fw~~~ 353 (375)
..+.+ |+...+ .+...++++. +-...||..+++.+.--+.+-|..||.=-
T Consensus 395 lVIEAV~E~l~~K~~vf~~l~~~~~~~aIlAsNTSsl~i~~lA~~~~~Per~iG~HFfnP~ 455 (715)
T PRK11730 395 VVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPV 455 (715)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 8998543658899999999986558753885157657789999751682115652214884
No 244
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=51.46 E-value=12 Score=18.02 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=7.2
Q ss_pred EEEECCCCCH
Q ss_conf 8998688851
Q gi|254780466|r 226 IILDPFFGSG 235 (375)
Q Consensus 226 iVLDPF~GSG 235 (375)
+++.|+.|+|
T Consensus 226 vi~EPv~g~g 235 (442)
T PRK05769 226 IFFEPIQGEG 235 (442)
T ss_pred EEEECCCCCC
T ss_conf 9998977788
No 245
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=50.96 E-value=12 Score=17.91 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=5.7
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.=|-|.
T Consensus 367 ~VgdVRG~GL~~ 378 (467)
T PRK07030 367 HVAEVRQTGMAL 378 (467)
T ss_pred CEEEEECCCCEE
T ss_conf 758883475199
No 246
>TIGR00495 crvDNA_42K DNA-binding protein, 42 kDa; InterPro: IPR004545 Proteins of this family have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. The proteins are closely related to methionine aminopeptidase, a cobalt-binding protein. This group sequences are classified as non-peptidase homologues in MEROPS peptidase family M24 (clan MG). .
Probab=50.55 E-value=11 Score=18.29 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=61.2
Q ss_pred HHCCC-CCC-EEEECCCCCHHHHHHHHHHCCEEE--EEEECHHHH---HHHHHHHHHCC----CCCHHHHCCCCCCCCCC
Q ss_conf 85289-988-899868885179999998098169--997289999---99999996305----68765630244433377
Q gi|254780466|r 218 VSSTK-PGD-IILDPFFGSGTSGAVAKKLRRSFI--GIEMKQDYI---DIATKRIASVQ----PLGNIELTVLTGKRTEP 286 (375)
Q Consensus 218 ~~~S~-~gD-iVLDPF~GSGTT~~aA~~lgR~~I--GiE~~~~Y~---~~a~~Rl~~~~----~~~~~~~~~~~~~~~~~ 286 (375)
..+.. ++. --.|--+-||-.|.|=..-.|.-- ==+.|..|- +.+++=+.+++ +++=........+|+
T Consensus 222 ~~~eFee~EVYavDil~StgP~GK~k~~~~~qttIYkk~~d~~Y~LK~kASR~~~sei~~~F~~~PF~~R~~~~ek~a-- 299 (407)
T TIGR00495 222 DTVEFEENEVYAVDILVSTGPEGKAKEEDERQTTIYKKDEDSTYKLKMKASRKFYSEIKKRFSAMPFTLRNFEFEKRA-- 299 (407)
T ss_pred CEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--
T ss_conf 226642011889999997388975442014688543128886635355520356556752277868761456600000--
Q ss_pred CCCHHHHHHCCCCCCCCEEECCCCCEEEEE------CCCCCEE
Q ss_conf 552346988286587765766898069998------1598178
Q gi|254780466|r 287 RVAFNLLVERGLIQPGQILTNAQGNISATV------CADGTLI 323 (375)
Q Consensus 287 rvpfg~lie~g~l~~g~~L~~~~~~~~a~v------~~DG~l~ 323 (375)
|..+-.++++++|+|=++||++.|.++|+. +++|++.
T Consensus 300 ~lGlvEc~~H~~L~pY~VLydk~G~~Vaqfk~Tvll~pnG~~~ 342 (407)
T TIGR00495 300 RLGLVECVEHKLLQPYPVLYDKDGEFVAQFKFTVLLMPNGSIR 342 (407)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEE
T ss_conf 2663455037712662431227998899888788853798654
No 247
>PRK12403 putative aminotransferase; Provisional
Probab=50.53 E-value=16 Score=17.21 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=7.1
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|-|.
T Consensus 373 ~vgdVRG~GLm~ 384 (460)
T PRK12403 373 LVGEVQGAGLVA 384 (460)
T ss_pred CEEEEECCCEEE
T ss_conf 588630145499
No 248
>PRK06541 hypothetical protein; Provisional
Probab=50.45 E-value=14 Score=17.67 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=7.1
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|-+.
T Consensus 370 ~v~dVRG~GL~~ 381 (460)
T PRK06541 370 IVGDVRGDGYFY 381 (460)
T ss_pred CEEEEECCCEEE
T ss_conf 778741077389
No 249
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=50.18 E-value=20 Score=16.64 Aligned_cols=48 Identities=38% Similarity=0.486 Sum_probs=35.4
Q ss_pred HHHHCCCCCCCCEEECCCCCEE--------EEECCCCCE-EECCEECCHHHHHHHHCCCC
Q ss_conf 6988286587765766898069--------998159817-86986531999998744981
Q gi|254780466|r 292 LLVERGLIQPGQILTNAQGNIS--------ATVCADGTL-ISGTELGSIHRVGAKVSGSE 342 (375)
Q Consensus 292 ~lie~g~l~~g~~L~~~~~~~~--------a~v~~DG~l-~~~~~~gsIh~i~a~~~~~~ 342 (375)
..|=++++.-|+..|-.++..+ |.|.|||++ +++.-+|..| |-+.|..
T Consensus 113 t~ii~~pVRSGQqVya~~gDLvVlg~Vs~GAEViAdGnIhVyG~LRGrA~---AGa~Gd~ 169 (220)
T PRK04804 113 TKVVRTPIRSGQQIYAKDGDLVILNHVSAGAEVIADGSIHIHGTLRGRAI---AGASGQK 169 (220)
T ss_pred CEEEECCCCCCCEEEECCCCEEEECCCCCCCEEEECCCEEEEEEECCEEE---ECCCCCC
T ss_conf 46980674588789956999899824699978993898999987044497---2578997
No 250
>PRK08555 consensus
Probab=50.10 E-value=14 Score=17.68 Aligned_cols=13 Identities=31% Similarity=0.734 Sum_probs=9.2
Q ss_pred CCEEEECCCCCHH
Q ss_conf 8889986888517
Q gi|254780466|r 224 GDIILDPFFGSGT 236 (375)
Q Consensus 224 gDiVLDPF~GSGT 236 (375)
..+|+.|..|+|-
T Consensus 224 Aavi~EPi~g~gG 236 (443)
T PRK08555 224 AGIFFEPIQGEGG 236 (443)
T ss_pred EEEEEECCCCCCC
T ss_conf 9999958768889
No 251
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=49.00 E-value=11 Score=18.24 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCCCCCCHHHHCCCEECCCHHHHHHHC---CCCCCCEEEECC
Q ss_conf 233324335532708517259989728---414711898477
Q gi|254780466|r 9 INENQNSIFEWKDKIIKGNSISVLEKL---PAKSVDLIFADP 47 (375)
Q Consensus 9 ~~~~~~~~~~~~nkI~~GDcl~~l~~L---pd~sVDlI~tDP 47 (375)
.|-..|++.+ --++++|.-.+|..= --+.++.|=+||
T Consensus 139 ~N~~~N~v~N--~~v~n~Da~~~L~~~nkat~~~F~viDiDP 178 (462)
T TIGR00308 139 NNVKLNSVEN--IEVINEDAAAVLRKRNKATFRKFEVIDIDP 178 (462)
T ss_pred HHHHHCCCCC--CCCCCCHHHHHHHHHCHHHCCCCCEEEECC
T ss_conf 4123244227--654550379998751211236764376478
No 252
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=48.94 E-value=21 Score=16.52 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=67.3
Q ss_pred HHHHCCCEECCCHHHHHHHC----CCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 35532708517259989728----41471189847787615587133367851300134435778989999988999999
Q gi|254780466|r 16 IFEWKDKIIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91 (375)
Q Consensus 16 ~~~~~nkI~~GDcl~~l~~L----pd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e 91 (375)
..+=+=+|.-+|-.+.++.. -.+..|.|++|=|=-+|... -=|.+++.+.
T Consensus 127 ~dderv~~~i~DG~~fl~~~Gasdv~~~fDVIIvDstDPvGPa~--------------------------~LF~~~Fy~~ 180 (284)
T TIGR00417 127 FDDERVDLAIDDGFKFLRDTGASDVEKKFDVIIVDSTDPVGPAE--------------------------TLFTKEFYEL 180 (284)
T ss_pred CCCCEEEEEECCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC--------------------------CHHHHHHHHH
T ss_conf 58880358982517989761522221214479972778956554--------------------------1021799999
Q ss_pred HHHHCCCCCEEEEE-CC--H---HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 99863968729998-34--6---88899998764057860124687315677775775176540213221005
Q gi|254780466|r 92 CRRVLKPNGTLWVI-GS--Y---HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158 (375)
Q Consensus 92 ~~RvLK~~Gsi~v~-~~--~---~~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~ 158 (375)
|++.|+|+|-|... .+ | .-+.-+...+.++||....-.. .++|.- ....=+.+|++|.
T Consensus 181 ~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~r~~~~~~F~~~~~y~----~~iPTY-----p~G~~~F~~~s~~ 244 (284)
T TIGR00417 181 LKKALNEDGVIVAQSSESPWLQLELIKDLKRKVKEVPFPITEYYT----AAIPTY-----PSGLWSFIIASKN 244 (284)
T ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE----EECCCC-----HHHHHHHHHCCCC
T ss_conf 998529998899802788432748888788877526897530466----407865-----0235453220242
No 253
>PRK07660 consensus
Probab=48.69 E-value=14 Score=17.62 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=11.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999986396872999834
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWVIGS 107 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v~~~ 107 (375)
++.+.+.-.+++++.-|.-.+|
T Consensus 98 ~~lf~~l~~~~~~~~IlaSNTS 119 (283)
T PRK07660 98 KKIFANLDEIAPEHAILATNTS 119 (283)
T ss_pred HHHHHHHHHHCCCCCEEEECCC
T ss_conf 9999999964799718986588
No 254
>KOG1401 consensus
Probab=48.54 E-value=10 Score=18.36 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCC-CCCCEEEECCCCCHH
Q ss_conf 899999998528-998889986888517
Q gi|254780466|r 210 EALLSRILVSST-KPGDIILDPFFGSGT 236 (375)
Q Consensus 210 ~~LleriI~~~S-~~gDiVLDPF~GSGT 236 (375)
..-++.+++..+ .-..+|+.|--|-|-
T Consensus 193 ~t~l~k~~e~~~~~IaAvIvEPiqGaGG 220 (433)
T KOG1401 193 STALEKLFESHKGEIAAVIVEPIQGAGG 220 (433)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 9999999984788568999713457888
No 255
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=48.15 E-value=15 Score=17.44 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=6.5
Q ss_pred EEEEECCCCCEEE
Q ss_conf 6999815981786
Q gi|254780466|r 312 ISATVCADGTLIS 324 (375)
Q Consensus 312 ~~a~v~~DG~l~~ 324 (375)
....||.-|-|..
T Consensus 329 ~v~~vRG~Gl~~g 341 (398)
T PRK02627 329 IIKEVRGLGLMIG 341 (398)
T ss_pred CEEEEEECCEEEE
T ss_conf 8367732257999
No 256
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.50 E-value=19 Score=16.78 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=13.3
Q ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
Q ss_conf 9999999986396872999834688899998
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~~ 116 (375)
.+.+.+.-++++++.-+.-.+|.-.+..+..
T Consensus 98 ~~vf~~le~~~~~~~IlaSnTSsl~is~la~ 128 (282)
T PRK05808 98 KKIFAQLDEIAKPEAILATNTSSLSITELAA 128 (282)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
T ss_conf 9999999955799848997588776699997
No 257
>PRK07323 consensus
Probab=47.24 E-value=11 Score=18.18 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=7.0
Q ss_pred CCEEEECCCCCH
Q ss_conf 888998688851
Q gi|254780466|r 224 GDIILDPFFGSG 235 (375)
Q Consensus 224 gDiVLDPF~GSG 235 (375)
.-+|+.|..|+|
T Consensus 226 AAvi~EPiqg~g 237 (443)
T PRK07323 226 AAIVVEPIQGEG 237 (443)
T ss_pred EEEEEECCCCCC
T ss_conf 999986877888
No 258
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=47.16 E-value=17 Score=17.14 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=7.0
Q ss_pred EEEEECCCCCEEE
Q ss_conf 6999815981786
Q gi|254780466|r 312 ISATVCADGTLIS 324 (375)
Q Consensus 312 ~~a~v~~DG~l~~ 324 (375)
....||.-|-|+-
T Consensus 329 ~v~~vRG~GLmiG 341 (404)
T COG4992 329 LVKEVRGRGLMIG 341 (404)
T ss_pred CEEEEECCEEEEE
T ss_conf 2122421504999
No 259
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=46.83 E-value=16 Score=17.29 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=5.4
Q ss_pred CEEEECCCCCH
Q ss_conf 88998688851
Q gi|254780466|r 225 DIILDPFFGSG 235 (375)
Q Consensus 225 DiVLDPF~GSG 235 (375)
.+|+.|..|+|
T Consensus 217 Aii~EPiqg~g 227 (441)
T PRK13360 217 AVIVEPVAGST 227 (441)
T ss_pred EEEECCCCCCC
T ss_conf 99977766778
No 260
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]; InterPro: IPR012766 This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This entry excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This entry does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cut offs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see ).; GO: 0003825 alphaalpha-trehalose-phosphate synthase (UDP-forming) activity, 0005992 trehalose biosynthetic process.
Probab=46.78 E-value=23 Score=16.32 Aligned_cols=73 Identities=27% Similarity=0.449 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEE-EEEEECCCCCCCCCCCCCCC-CHHHHH
Q ss_conf 989999988999999998639687299983468889999876405786012-46873156777757751765-402132
Q gi|254780466|r 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN-DIVWRKSNPMPNFRGRRFQN-AHETLI 153 (375)
Q Consensus 77 s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~~~l~~~gf~~~n-~IIW~K~n~~pn~~g~r~~~-~hE~ii 153 (375)
.+++|.+=-+.+...+..+++||-.|||+ |||=+. +..+|.+.| ..| .|=|-=.-|.|+.-=-+.=. .|+.|+
T Consensus 119 ~~~aY~~VN~~FA~~~~~~~~~gD~~WvH-DYHL~~-lp~~LRe~~--~~n~~iGFFLHiPfPS~ei~~~lP~~~~~ll 193 (476)
T TIGR02400 119 EWEAYRRVNRLFAEALAPLLQPGDIVWVH-DYHLML-LPAMLRELG--VENVKIGFFLHIPFPSSEIYRTLPEWRRELL 193 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEE-CCHHHH-HHHHHHHHC--CCCCEEEEECCCCCCCHHHHHCCHHHHHHHH
T ss_conf 89999999999999999863899899984-414568-999999717--7853001041789985799851805799999
No 261
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=46.78 E-value=19 Score=16.81 Aligned_cols=13 Identities=23% Similarity=-0.028 Sum_probs=8.3
Q ss_pred CEEEEECCCCCEE
Q ss_conf 0699981598178
Q gi|254780466|r 311 NISATVCADGTLI 323 (375)
Q Consensus 311 ~~~a~v~~DG~l~ 323 (375)
..+..||.-|-|.
T Consensus 353 p~V~dVRG~Glm~ 365 (423)
T PRK05630 353 PGVADVRVLGAIG 365 (423)
T ss_pred CCEEEEEECCEEE
T ss_conf 9678773055499
No 262
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=46.50 E-value=14 Score=17.59 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=37.9
Q ss_pred HHHCCCCCCCCEEECCCCCEEEEECCCCCEEECCEECCHHHHHHHH
Q ss_conf 9882865877657668980699981598178698653199999874
Q gi|254780466|r 293 LVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKV 338 (375)
Q Consensus 293 lie~g~l~~g~~L~~~~~~~~a~v~~DG~l~~~~~~gsIh~i~a~~ 338 (375)
++|.-+-+.|-....+..-+...|-.||.|+++..-.|-+.+|-++
T Consensus 182 ~le~~L~~~Ga~~~~~~~~~~~~vv~Dg~LITGQNP~Sa~~va~~~ 227 (231)
T cd03147 182 SIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAA 227 (231)
T ss_pred CHHHHHHHCCCEEECCCCCCCCCEEEECCEEECCCCHHHHHHHHHH
T ss_conf 8899999759989736889988689709867688937789999999
No 263
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=46.06 E-value=23 Score=16.25 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 8999999998639687299983468889999876
Q gi|254780466|r 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118 (375)
Q Consensus 85 ~~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~~~l 118 (375)
-++.+.++-.+++++.-+--.+|...+..+...+
T Consensus 97 K~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~ 130 (307)
T COG1250 97 KKQVFAELEALAKPDAILASNTSSLSITELAEAL 130 (307)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 9999999886559885786226778789999873
No 264
>KOG1227 consensus
Probab=45.94 E-value=20 Score=16.60 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=46.0
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHH-HHHHHC-CEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC-----
Q ss_conf 999998528998889986888517999-999809-8169997289999999999963056876563024443337-----
Q gi|254780466|r 213 LSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE----- 285 (375)
Q Consensus 213 leriI~~~S~~gDiVLDPF~GSGTT~~-aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~----- 285 (375)
..|+... |-.|.+|.|-|+|-|=-.. --..-| +--..||.||..++.-++-++.-...+...+.-..+.+..
T Consensus 185 K~Rv~~~-sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~A 263 (351)
T KOG1227 185 KKRVLNT-SCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRA 263 (351)
T ss_pred HHHHHHC-CCCCCHHHHHHCCCCEEEEEHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 8776512-456530122342654487402300574579999458799999998777411578878665102366755320
Q ss_pred CCCCHHHH
Q ss_conf 75523469
Q gi|254780466|r 286 PRVAFNLL 293 (375)
Q Consensus 286 ~rvpfg~l 293 (375)
-||.+|-|
T Consensus 264 drVnLGLl 271 (351)
T KOG1227 264 DRVNLGLL 271 (351)
T ss_pred HHEEECCC
T ss_conf 20364345
No 265
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=45.90 E-value=19 Score=16.77 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=11.4
Q ss_pred HHHHHHHHCCCCC---CEEEECCCCCH
Q ss_conf 9999998528998---88998688851
Q gi|254780466|r 212 LLSRILVSSTKPG---DIILDPFFGSG 235 (375)
Q Consensus 212 LleriI~~~S~~g---DiVLDPF~GSG 235 (375)
.+++++.....++ .+|+.|+.|+|
T Consensus 183 ~l~~~~~~~~~~~~iAAvIvEPiqg~g 209 (422)
T PRK07495 183 ALDKLFKADVDPQRVAAIIIEPVQGEG 209 (422)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 999998751687757899966764788
No 266
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=45.82 E-value=20 Score=16.65 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=5.2
Q ss_pred HHHHHCCCCCCC
Q ss_conf 989728414711
Q gi|254780466|r 30 SVLEKLPAKSVD 41 (375)
Q Consensus 30 ~~l~~Lpd~sVD 41 (375)
+.|+.|..+.++
T Consensus 38 ~~~~~~~~~~~~ 49 (468)
T PRK11522 38 EEMKALNREVIE 49 (468)
T ss_pred HHHHHHHHHHHH
T ss_conf 998675798999
No 267
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=45.72 E-value=21 Score=16.48 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=6.9
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.=|-|.
T Consensus 349 ~i~dVRG~Gl~~ 360 (443)
T PRK08360 349 LIGDVRGLGLMI 360 (443)
T ss_pred CEEEECCCCEEE
T ss_conf 888520364699
No 268
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.37 E-value=17 Score=17.05 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=15.2
Q ss_pred HHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999986396872999
Q gi|254780466|r 86 RAWLLACRRVLKPNGTLWV 104 (375)
Q Consensus 86 ~~wl~e~~RvLK~~Gsi~v 104 (375)
...++||+|+|||+|-+-+
T Consensus 66 ~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 66 TSALKECHRFLRPGGKLRI 84 (185)
T ss_pred HHHHHHHHHHHCCCCEEEE
T ss_conf 9999999997086758999
No 269
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.21 E-value=24 Score=16.17 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=22.7
Q ss_pred CCCCHHHHHHCCCCC--CCCEEECCCCCEEEEECCC
Q ss_conf 755234698828658--7765766898069998159
Q gi|254780466|r 286 PRVAFNLLVERGLIQ--PGQILTNAQGNISATVCAD 319 (375)
Q Consensus 286 ~rvpfg~lie~g~l~--~g~~L~~~~~~~~a~v~~D 319 (375)
|.--+..+|++|.+- -|.=+|+.......++..|
T Consensus 257 ~~~~l~~~v~~G~lG~KsG~GFY~y~~~~~~~~~~~ 292 (310)
T PRK06130 257 PSPLLEEKVEAGELGAKSGQGFYAWPPERRERVLRD 292 (310)
T ss_pred CCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCH
T ss_conf 069999999779974458974347999876789970
No 270
>PRK06149 hypothetical protein; Provisional
Probab=45.05 E-value=17 Score=17.14 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHH-HHHHHH
Q ss_conf 68778189999999852899888998688851799-999980
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKL 244 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~-~aA~~l 244 (375)
|+.+ ++|.||+.......-|.| .|+-|||.+ -+|.+|
T Consensus 623 ~~~~--~elAerL~~~~P~~l~~v--fF~nSGsEAnE~AlKl 660 (972)
T PRK06149 623 YAAV--AEFSERLAALAPDGLDTV--FLVNSGSEANDLAIRL 660 (972)
T ss_pred CHHH--HHHHHHHHHHCCCCCCEE--EEECCHHHHHHHHHHH
T ss_conf 5159--999999998576562669--8507749999999999
No 271
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=45.01 E-value=13 Score=17.72 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=6.9
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
....||.-|-|.
T Consensus 328 ~i~dVRG~GLm~ 339 (406)
T PRK12381 328 LFSEIRGLGLLI 339 (406)
T ss_pred CEEEEEECCEEE
T ss_conf 888630252699
No 272
>PRK04004 translation initiation factor IF-2; Validated
Probab=44.96 E-value=24 Score=16.14 Aligned_cols=79 Identities=20% Similarity=0.170 Sum_probs=48.4
Q ss_pred CHHHHHHCCCCCCCCEEECCCCCEEEEECCCCCEEECC-EECCHHHHHHHHCCCCCCCCEEE-EEEEECCEEEE------
Q ss_conf 23469882865877657668980699981598178698-65319999987449810067114-67975995712------
Q gi|254780466|r 289 AFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT-ELGSIHRVGAKVSGSETCNGWNF-WYFEKLGELHS------ 360 (375)
Q Consensus 289 pfg~lie~g~l~~g~~L~~~~~~~~a~v~~DG~l~~~~-~~gsIh~i~a~~~~~~~cNGw~f-w~~~~~~~~~~------ 360 (375)
-+|..|..|-|++|..|...++... |++.+=. ..=++..+.+-..-.=++-|++| .|++.+..+.+
T Consensus 483 I~Gv~V~~G~ik~g~~l~~~dg~~i------G~I~SLk~~k~dV~Ev~~G~EcgI~Ieg~t~GR~~~e~D~lys~i~~~~ 556 (592)
T PRK04004 483 IVGVEVLGGTIKPGVPLIKEDGKRV------GTIKQIQDRGENIKEAKAGMEVAISIDGPTVGRQIKEGDVLYVDVPEEH 556 (592)
T ss_pred EEEEEEEEEEEECCCEEEECCCCEE------EEEEEHHHCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCHHH
T ss_conf 9999986468966986990499199------8981052138765452689779999647720677789987999689999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999998761
Q gi|254780466|r 361 INTLRILVRKELY 373 (375)
Q Consensus 361 id~lR~~~r~~~~ 373 (375)
||.|++.+|.+|.
T Consensus 557 ~~~l~~~~~~~l~ 569 (592)
T PRK04004 557 AKILETEYKDELS 569 (592)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999876679
No 273
>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional
Probab=44.83 E-value=14 Score=17.60 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=4.9
Q ss_pred CCEEEECCCCCH
Q ss_conf 888998688851
Q gi|254780466|r 224 GDIILDPFFGSG 235 (375)
Q Consensus 224 gDiVLDPF~GSG 235 (375)
..+++.|..|+|
T Consensus 177 AaviiEPi~g~g 188 (389)
T PRK01278 177 AAILIEPIQGEG 188 (389)
T ss_pred EEEEEECCCCCC
T ss_conf 799996888888
No 274
>PRK06062 hypothetical protein; Provisional
Probab=44.75 E-value=15 Score=17.43 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=11.5
Q ss_pred HHHHHHHHC--CCCCCEEEECCCCCH
Q ss_conf 999999852--899888998688851
Q gi|254780466|r 212 LLSRILVSS--TKPGDIILDPFFGSG 235 (375)
Q Consensus 212 LleriI~~~--S~~gDiVLDPF~GSG 235 (375)
.++++|... .+...+|+.|..|+|
T Consensus 185 ~l~~~i~~~~~~~iAAvivEPiqg~g 210 (434)
T PRK06062 185 HLERVIALEGPSTIAAIVLESVPGTA 210 (434)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 99999985199977999947867889
No 275
>PRK07483 hypothetical protein; Provisional
Probab=44.64 E-value=17 Score=17.12 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=6.5
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
....||.-|-+.
T Consensus 350 ~I~dVRG~GLm~ 361 (443)
T PRK07483 350 HVGDIRGRGLFV 361 (443)
T ss_pred CEEEEECCEEEE
T ss_conf 778854041489
No 276
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=43.44 E-value=24 Score=16.14 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=7.3
Q ss_pred CCEEEEECCCCCEE
Q ss_conf 80699981598178
Q gi|254780466|r 310 GNISATVCADGTLI 323 (375)
Q Consensus 310 ~~~~a~v~~DG~l~ 323 (375)
...+..||.-|-+.
T Consensus 353 ~~~V~dVRg~Gl~~ 366 (428)
T PRK07986 353 AEMVADVRVLGAIG 366 (428)
T ss_pred CCCEEEEEECCEEE
T ss_conf 99578774267289
No 277
>COG1978 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.17 E-value=26 Score=15.97 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=8.7
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 687781899999998
Q gi|254780466|r 204 HPTQKPEALLSRILV 218 (375)
Q Consensus 204 HPTqKP~~LleriI~ 218 (375)
-+-.||-+...-+|-
T Consensus 133 ~~qIKPdSyaAsciA 147 (152)
T COG1978 133 TYQIKPDSYAASCIA 147 (152)
T ss_pred CCEECCCHHHHHHHH
T ss_conf 411274078888877
No 278
>PRK08466 consensus
Probab=43.09 E-value=23 Score=16.26 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=6.2
Q ss_pred CEEEEECCCCCEE
Q ss_conf 0699981598178
Q gi|254780466|r 311 NISATVCADGTLI 323 (375)
Q Consensus 311 ~~~a~v~~DG~l~ 323 (375)
..+..||.-|-+.
T Consensus 355 ~~v~~vRg~Gl~~ 367 (430)
T PRK08466 355 DFVGNLRQCGMVF 367 (430)
T ss_pred CCEEEEEECCEEE
T ss_conf 9757884125389
No 279
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=42.78 E-value=26 Score=15.94 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 89999999986396872999834
Q gi|254780466|r 85 TRAWLLACRRVLKPNGTLWVIGS 107 (375)
Q Consensus 85 ~~~wl~e~~RvLK~~Gsi~v~~~ 107 (375)
=++.+.++-.+++++.-|.-.+|
T Consensus 97 K~~lf~~le~~~~~~~IlaSnTS 119 (308)
T PRK06129 97 KRALFAELDALAPPHAILASSTS 119 (308)
T ss_pred HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999965698558984555
No 280
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=42.43 E-value=19 Score=16.77 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=6.1
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|-|.
T Consensus 375 ~VgdVRG~GLm~ 386 (460)
T PRK06082 375 VIGDVRGIGLLW 386 (460)
T ss_pred CEEEECCCCEEE
T ss_conf 788523365499
No 281
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=42.28 E-value=8.6 Score=18.88 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC-------CEEEEEEECHHHHHHHH
Q ss_conf 7781899999998528998889986888517999999809-------81699972899999999
Q gi|254780466|r 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-------RSFIGIEMKQDYIDIAT 262 (375)
Q Consensus 206 TqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg-------R~~IGiE~~~~Y~~~a~ 262 (375)
|..|+....++=...+..--+++||...||.|+.+|.+.= -.++.+=-.++.++...
T Consensus 107 T~~p~~yy~kLP~~i~~~~VlllDPmlATG~s~~~ai~~L~~~G~~~I~~v~~ias~~Gi~~v~ 170 (208)
T PRK00129 107 TLEPVEYLEKLPSDIDERTVIVVDPMLATGGSMIAAIDLLKKRGAKRIKVLCLVAAPEGIKALE 170 (208)
T ss_pred CCCEEEEHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHH
T ss_conf 7770675632864446687998785564376699999999966997389999996489999999
No 282
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=42.05 E-value=27 Score=15.87 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCCC--CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-HHHHC--CEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 68778--18999999985289988899868885179999-99809--816999728999999999996305687656302
Q gi|254780466|r 204 HPTQK--PEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLR--RSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278 (375)
Q Consensus 204 HPTqK--P~~LleriI~~~S~~gDiVLDPF~GSGTT~~a-A~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~ 278 (375)
|.||- |...-.-+..+--.||+.|+..=.|||+-..+ |...| =+-+.+|..++.++.|++-++.....+...+.
T Consensus 81 rrtQIiYpkD~s~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~- 159 (309)
T pfam08704 81 HRTQILYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVT- 159 (309)
T ss_pred CCCCEECCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE-
T ss_conf 8773255600999999809899999998367842999999997488865999844789999999999874987505889-
Q ss_pred CCCCCCCCCCCHHHHHHCCCC-----CCCCEEECCCCCEEEEE------CC-CCCEEECCEECCHHHHHHHHCCCCCCCC
Q ss_conf 444333775523469882865-----87765766898069998------15-9817869865319999987449810067
Q gi|254780466|r 279 LTGKRTEPRVAFNLLVERGLI-----QPGQILTNAQGNISATV------CA-DGTLISGTELGSIHRVGAKVSGSETCNG 346 (375)
Q Consensus 279 ~~~~~~~~rvpfg~lie~g~l-----~~g~~L~~~~~~~~a~v------~~-DG~l~~~~~~gsIh~i~a~~~~~~~cNG 346 (375)
.| .+.+.|+. .+--++.|-..-|.|.- +. .|.|.+ -.=.|.||--.++.... +|
T Consensus 160 ---~r--------Dv~~~gf~~~~~~~~D~VfLDlp~PW~ai~~~~~~Lk~~Gg~l~~--f~P~ieQv~r~~~aL~~-~g 225 (309)
T pfam08704 160 ---HR--------DVCKSGFDTEVSNKADAVFLDLPAPWEAIPHAAKALKVEGGRLCS--FSPCIEQVQRTCLALAA-LG 225 (309)
T ss_pred ---EC--------CHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEE--ECCCHHHHHHHHHHHHH-CC
T ss_conf ---85--------200136664456643589975899799889999860689968999--91989999999999997-79
Q ss_pred EE
Q ss_conf 11
Q gi|254780466|r 347 WN 348 (375)
Q Consensus 347 w~ 348 (375)
|+
T Consensus 226 F~ 227 (309)
T pfam08704 226 FT 227 (309)
T ss_pred CC
T ss_conf 97
No 283
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=40.71 E-value=24 Score=16.19 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=7.1
Q ss_pred CEEEEECCCCCEE
Q ss_conf 0699981598178
Q gi|254780466|r 311 NISATVCADGTLI 323 (375)
Q Consensus 311 ~~~a~v~~DG~l~ 323 (375)
..+..||.-|-+.
T Consensus 356 ~~v~dVRG~Gl~~ 368 (429)
T PRK06173 356 DYVAEVRVLGAIG 368 (429)
T ss_pred CCEEEECCCCEEE
T ss_conf 9668742357299
No 284
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=40.51 E-value=12 Score=18.06 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=63.0
Q ss_pred CCHHHH----HHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCC--CCCCCCCCCHHHHHH----CCCCC-C
Q ss_conf 851799----999980981699972899999999999630568765630244--433377552346988----28658-7
Q gi|254780466|r 233 GSGTSG----AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT--GKRTEPRVAFNLLVE----RGLIQ-P 301 (375)
Q Consensus 233 GSGTT~----~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~--~~~~~~rvpfg~lie----~g~l~-~ 301 (375)
|+|+-| ..+..-|.+-.-+|.+++..+.+.+|+.+............. ......|+.+..-++ ..++. +
T Consensus 6 GaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~adlViEa 85 (180)
T pfam02737 6 GAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADAVDADLVIEA 85 (180)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCCCEEEEC
T ss_conf 97889999999999679939999799899999999999989999972567567699998524105889997589999992
Q ss_pred CCEEECCCCCEEE---EECCCCCEEECC-EECCHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 7657668980699---981598178698-6531999998744981006711467
Q gi|254780466|r 302 GQILTNAQGNISA---TVCADGTLISGT-ELGSIHRVGAKVSGSETCNGWNFWY 351 (375)
Q Consensus 302 g~~L~~~~~~~~a---~v~~DG~l~~~~-~~gsIh~i~a~~~~~~~cNGw~fw~ 351 (375)
...-.+.|+...+ .+..+.+++.-+ -..||..+++.+...+.|=|-.|+.
T Consensus 86 v~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~is~la~~~~~p~R~ig~Hffn 139 (180)
T pfam02737 86 VPENLDLKRELFAELDAIAPPDAILASNTSSLSITELAAATKRPERFIGLHFFN 139 (180)
T ss_pred CCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCHHHHHHHCCCCCEEEEECCCC
T ss_conf 517688999999999974303308875267689999997479876699975688
No 285
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=40.43 E-value=29 Score=15.71 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=12.8
Q ss_pred EECCCHHHHHHHCCC--CCCCEEEECC
Q ss_conf 851725998972841--4711898477
Q gi|254780466|r 23 IIKGNSISVLEKLPA--KSVDLIFADP 47 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd--~sVDlI~tDP 47 (375)
.++.|-...|+.|.- +..=|.||+-
T Consensus 19 ~~wEDp~vd~~~L~~~~~d~vl~I~s~ 45 (376)
T pfam11899 19 QIWEDPRVDMEALNLGPDDTVLAITSA 45 (376)
T ss_pred CCCCCCHHHHHHHCCCCCCEEEEEECC
T ss_conf 444782889998489999979998377
No 286
>pfam00202 Aminotran_3 Aminotransferase class-III.
Probab=40.39 E-value=21 Score=16.52 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=19.8
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 9988899868885179999998098169997289999999999963
Q gi|254780466|r 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 222 ~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+-..+|+.|..|+|-. +..+++|++..++--++
T Consensus 177 ~iaaviiEPi~g~~G~-------------~~~~~~yl~~lr~lc~~ 209 (338)
T pfam00202 177 NIAAVIVEPIQGEGGV-------------VPPPPGFLAGLREICKK 209 (338)
T ss_pred CEEEEEEECCCCCCCC-------------CCCCHHHHHHHHHHHHH
T ss_conf 7799999887788997-------------67987999999999743
No 287
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=39.96 E-value=29 Score=15.67 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCEEEEE-----EEC---HHHHHHHHHHHHHC
Q ss_conf 8998889986888517999999809816999-----728---99999999999630
Q gi|254780466|r 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGI-----EMK---QDYIDIATKRIASV 268 (375)
Q Consensus 221 S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGi-----E~~---~~Y~~~a~~Rl~~~ 268 (375)
.+..-|..+|...+.+.-.+|+.+|=+.+-+ ++. ..|+++-..=..++
T Consensus 248 ~~v~~If~Ep~~~~k~~~~ia~~~g~kv~~lDpLg~~~~~~~~~Y~~~m~~~~~~~ 303 (308)
T PRK09545 248 HKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPLGTNIKLGKTSYSNFLSQLANQY 303 (308)
T ss_pred HCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 39979996599994999999986598599967875568888117999999999999
No 288
>KOG1099 consensus
Probab=39.00 E-value=30 Score=15.58 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=39.9
Q ss_pred CCEECCCHHH-HHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHH--HHHHHHHHHHHCC
Q ss_conf 7085172599-897284147118984778761558713336785130013443577898999998--8999999998639
Q gi|254780466|r 21 DKIIKGNSIS-VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF--TRAWLLACRRVLK 97 (375)
Q Consensus 21 nkI~~GDcl~-~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f--~~~wl~e~~RvLK 97 (375)
.-|-+.+|++ +++++-.+..|||+.|--= |-+ |+ -+++||.+- +..-|...-+|||
T Consensus 96 ~DIT~~stae~Ii~hfggekAdlVvcDGAP-----------DvT---Gl-------Hd~DEy~Q~qLllaAl~i~t~Vlk 154 (294)
T KOG1099 96 GDITSASTAEAIIEHFGGEKADLVVCDGAP-----------DVT---GL-------HDLDEYVQAQLLLAALNIATCVLK 154 (294)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEECCCC-----------CCC---CC-------CCHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 455777689999998579976678847998-----------744---53-------208899999999999877742014
Q ss_pred CCCEEE
Q ss_conf 687299
Q gi|254780466|r 98 PNGTLW 103 (375)
Q Consensus 98 ~~Gsi~ 103 (375)
++|++.
T Consensus 155 ~Gg~FV 160 (294)
T KOG1099 155 PGGSFV 160 (294)
T ss_pred CCCEEE
T ss_conf 787525
No 289
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=38.64 E-value=28 Score=15.79 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCCCHHHHCC---------CEECCCHHHHHHHCCCCCCCEEEECC
Q ss_conf 986543202333243355327---------08517259989728414711898477
Q gi|254780466|r 1 MSQKNSLAINENQNSIFEWKD---------KIIKGNSISVLEKLPAKSVDLIFADP 47 (375)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~n---------kI~~GDcl~~l~~Lpd~sVDlI~tDP 47 (375)
||..+++++.+.+..+-..+- -...+|..+.+..+....+|+|++|-
T Consensus 1 M~~~~rILIVDDd~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~~~DlvllDi 56 (457)
T PRK11361 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDI 56 (457)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEEC
T ss_conf 99999289983999999999999997799899989999999998668989999828
No 290
>KOG0458 consensus
Probab=38.61 E-value=17 Score=17.08 Aligned_cols=28 Identities=39% Similarity=0.383 Sum_probs=22.7
Q ss_pred HHHHHCCCCCCCCEEECCCCCEEEEECC
Q ss_conf 4698828658776576689806999815
Q gi|254780466|r 291 NLLVERGLIQPGQILTNAQGNISATVCA 318 (375)
Q Consensus 291 g~lie~g~l~~g~~L~~~~~~~~a~v~~ 318 (375)
--.||.|+||+|+.|+.-..+..|+|+.
T Consensus 424 ~gkiesG~iq~gqkl~i~~s~e~~~vk~ 451 (603)
T KOG0458 424 SGKIESGYIQPGQKLYIMTSREDATVKG 451 (603)
T ss_pred EEEEECCCCCCCCEEEEECCCCEEEEEE
T ss_conf 9997214213599899835753079985
No 291
>pfam11793 FANCL_C FANCL C-terminal domain. This domain is found at the C-terminus of the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2.
Probab=38.14 E-value=15 Score=17.47 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.4
Q ss_pred CCCEECCCHH-HHHHHCCC--CCCCEEEECCCCC
Q ss_conf 2708517259-98972841--4711898477876
Q gi|254780466|r 20 KDKIIKGNSI-SVLEKLPA--KSVDLIFADPPYN 50 (375)
Q Consensus 20 ~nkI~~GDcl-~~l~~Lpd--~sVDlI~tDPPYn 50 (375)
=++.+|..|| ++|+.||+ .|++.+|-.=||-
T Consensus 28 C~~~FH~~CL~eWl~slp~sr~sf~~~fG~CPyC 61 (70)
T pfam11793 28 CGLPFHIACLYEWLRTLRDSRQSFNVSFGTCPYC 61 (70)
T ss_pred HCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
T ss_conf 4768799999999984864006742352059888
No 292
>TIGR00459 aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module . This family represents aspartyl-tRNA synthetases from the bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=38.01 E-value=31 Score=15.48 Aligned_cols=42 Identities=33% Similarity=0.547 Sum_probs=33.2
Q ss_pred CCCCCCCHHH--HHHHHHHCCCC-CCEEEECCCCCHH-HHHHHHHHC
Q ss_conf 3687781899--99999852899-8889986888517-999999809
Q gi|254780466|r 203 LHPTQKPEAL--LSRILVSSTKP-GDIILDPFFGSGT-SGAVAKKLR 245 (375)
Q Consensus 203 ~HPTqKP~~L--leriI~~~S~~-gDiVLDPF~GSGT-T~~aA~~lg 245 (375)
.||=.|++.+ .+.|+.....+ |||+|.|| |.|. +..|+..||
T Consensus 410 ~~~i~kfL~~~~~~~~~~~t~a~~gdillnPf-g~~~l~~~v~~~lg 455 (653)
T TIGR00459 410 KSPIKKFLDEKKLKKLLERTDAQEGDILLNPF-GAGDLKKIVLDALG 455 (653)
T ss_pred CCHHHHCCCHHHHHHHHHHHHCCCCCEEECCC-CCHHHHHHHHHHHC
T ss_conf 31012024735778899874212687865577-86058999998504
No 293
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=37.82 E-value=31 Score=15.47 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=18.8
Q ss_pred CCEECCCHHHHHHH-CCCCCCCEEEECCCC
Q ss_conf 70851725998972-841471189847787
Q gi|254780466|r 21 DKIIKGNSISVLEK-LPAKSVDLIFADPPY 49 (375)
Q Consensus 21 nkI~~GDcl~~l~~-Lpd~sVDlI~tDPPY 49 (375)
..++++|-.+.... ++...||+++..||=
T Consensus 48 ~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 48 GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred CCCHHHHHHHHCHHHCCCCCCCEEEECCCC
T ss_conf 742030376605222355676379858997
No 294
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=37.75 E-value=12 Score=18.08 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC----CEE-EEEEECHHHHHHHHH--HHHH
Q ss_conf 999998528998889986888517999999809----816-999728999999999--9963
Q gi|254780466|r 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR----RSF-IGIEMKQDYIDIATK--RIAS 267 (375)
Q Consensus 213 leriI~~~S~~gDiVLDPF~GSGTT~~aA~~lg----R~~-IGiE~~~~Y~~~a~~--Rl~~ 267 (375)
-|+||..+|++==+|.|. -....+|| ..- +=+|..|.....+.+ ++++
T Consensus 103 rEKIva~~s~~~ivIaDe-------~K~V~~LG~d~~~fppLPvEV~Pf~~~~~~~~l~~~~ 157 (236)
T TIGR00021 103 REKIVASASKRFIVIADE-------SKLVDKLGGDQWKFPPLPVEVVPFAWKATARRLKLEK 157 (236)
T ss_pred HHHHHHHHCCEEEEEECC-------CCCCHHCCCCEEECCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 999998752806999727-------4240111772000686047880368078999899888
No 295
>PRK07678 aminotransferase; Validated
Probab=37.52 E-value=32 Score=15.44 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=7.3
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|-|.
T Consensus 365 ~i~dVRG~GLm~ 376 (451)
T PRK07678 365 LVGDIRGKGLLV 376 (451)
T ss_pred CEEEEEECCEEE
T ss_conf 888876165689
No 296
>PRK07480 putative aminotransferase; Validated
Probab=37.25 E-value=23 Score=16.25 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=4.6
Q ss_pred EEEEECCCCCE
Q ss_conf 69998159817
Q gi|254780466|r 312 ISATVCADGTL 322 (375)
Q Consensus 312 ~~a~v~~DG~l 322 (375)
....||.-|-|
T Consensus 372 ~i~~vRG~Glm 382 (459)
T PRK07480 372 LVGEVRGVGLV 382 (459)
T ss_pred CEEEEEECCEE
T ss_conf 68772305528
No 297
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=37.05 E-value=32 Score=15.39 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHCCCC---C-EEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 99999863968---7-299983468889999876405786012468731567777577517654021322100566
Q gi|254780466|r 89 LLACRRVLKPN---G-TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160 (375)
Q Consensus 89 l~e~~RvLK~~---G-si~v~~~~~~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~~~ 160 (375)
|..++....++ | ++.=+|+-.+||.+..+.+. +.+-+...++. .|..|.--|..+.+.
T Consensus 43 l~~l~~~f~~g~~kg~~LiDvG~GPtiy~~lsA~~~----f~~I~lsDy~~----------~Nr~el~kWl~~ep~ 104 (261)
T pfam01234 43 LPNLLQTFGPGGVKGDTLIDIGSGPTIYQLLSACEV----FKEIHLSDYLP----------QNRDELIKWLKKEPG 104 (261)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHH----CCEEEECCCCH----------HHHHHHHHHHHCCCC
T ss_conf 999999837787466689984789458888767765----07178602557----------679999999706998
No 298
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=36.77 E-value=33 Score=15.36 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=49.3
Q ss_pred HCCCEECCCHHHHHHHCC--CCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 327085172599897284--147118984778761558713336785130013443577898999998899999999863
Q gi|254780466|r 19 WKDKIIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96 (375)
Q Consensus 19 ~~nkI~~GDcl~~l~~Lp--d~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvL 96 (375)
+.+++--=...+.-+... .+++|.+++=--. +.+..+.|.|.-|...+.. -+.++.++|
T Consensus 41 ~~~rlssi~p~ef~~~~~~~~~~FD~a~SfSSi-----------EH~GLGRYGDpidp~Gdlk--------~m~~i~~~L 101 (177)
T pfam03269 41 FRDRLSSILPTDFAKNFKKYAESFDFAASFSSI-----------EHSGLGRYGDPIDPIGDLR--------EMLKIKCVL 101 (177)
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCEEEEEEEEEE-----------EECCCCCCCCCCCCCCCHH--------HHHHHHHHH
T ss_conf 321001156889999987523532389996124-----------4405655689779851099--------999999861
Q ss_pred CCCCEEEEE---C------CHHHHH-HHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 968729998---3------468889-999876405786012468731567
Q gi|254780466|r 97 KPNGTLWVI---G------SYHNIF-RIGTMLQNLNFWILNDIVWRKSNP 136 (375)
Q Consensus 97 K~~Gsi~v~---~------~~~~i~-~i~~~l~~~gf~~~n~IIW~K~n~ 136 (375)
|++|.+|+- | .-|-|| .++.+|-=.||.++...-|+...|
T Consensus 102 k~~G~l~l~vPiG~d~v~fN~HRiYG~~Rl~~m~~Gfewi~tfs~~~~~~ 151 (177)
T pfam03269 102 KKGGLLFLGLPLGTDAIIFNAHRIYGSVRLAMMMYGFEWIDTFSGDSEQS 151 (177)
T ss_pred CCCCEEEEEECCCCCCEEEECCEEECHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 78967999953777616870340234668899864846654417776666
No 299
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=36.28 E-value=28 Score=15.74 Aligned_cols=10 Identities=50% Similarity=1.218 Sum_probs=6.0
Q ss_pred EEEECCCCCH
Q ss_conf 8998688851
Q gi|254780466|r 226 IILDPFFGSG 235 (375)
Q Consensus 226 iVLDPF~GSG 235 (375)
+|+.|..|+|
T Consensus 209 viiEPi~g~g 218 (429)
T PRK08117 209 IIIEPVLGEG 218 (429)
T ss_pred EEEECCCCCC
T ss_conf 9996466788
No 300
>pfam01202 SKI Shikimate kinase.
Probab=36.21 E-value=27 Score=15.85 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCH-HHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 998899999999863968729998346-888999987640578601246873156
Q gi|254780466|r 82 DAFTRAWLLACRRVLKPNGTLWVIGSY-HNIFRIGTMLQNLNFWILNDIVWRKSN 135 (375)
Q Consensus 82 ~~f~~~wl~e~~RvLK~~Gsi~v~~~~-~~i~~i~~~l~~~gf~~~n~IIW~K~n 135 (375)
..|-......+.++++..+.+.-.|+- -.......+|.+.|+ +||-+..
T Consensus 45 ~~FR~~E~~~l~~l~~~~~~VIstGGG~v~~~~~~~~L~~~g~-----vi~L~~~ 94 (158)
T pfam01202 45 EGFRRLESEVLKELLAEHNAVIATGGGAVLSEENRDLLRENGI-----VVYLDAD 94 (158)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCE-----EEEEECC
T ss_conf 9999999999999971699499807860258999999995792-----7998499
No 301
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.87 E-value=6.4 Score=19.64 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=6.4
Q ss_pred HHHHHHCCCCC
Q ss_conf 34698828658
Q gi|254780466|r 290 FNLLVERGLIQ 300 (375)
Q Consensus 290 fg~lie~g~l~ 300 (375)
+..+|++|.+-
T Consensus 263 l~~mv~~G~lG 273 (284)
T PRK07819 263 LLRMVEAGLLG 273 (284)
T ss_pred HHHHHHCCCCC
T ss_conf 99999779976
No 302
>PRK07894 consensus
Probab=35.47 E-value=30 Score=15.57 Aligned_cols=11 Identities=18% Similarity=0.075 Sum_probs=5.5
Q ss_pred EEEECCCCCEE
Q ss_conf 99981598178
Q gi|254780466|r 313 SATVCADGTLI 323 (375)
Q Consensus 313 ~a~v~~DG~l~ 323 (375)
+..||.-|-|.
T Consensus 361 V~dVRg~Gl~~ 371 (430)
T PRK07894 361 VTDVRVLGAIG 371 (430)
T ss_pred EEEECCCCEEE
T ss_conf 69894668099
No 303
>PRK12458 glutathione synthetase; Provisional
Probab=35.36 E-value=34 Score=15.23 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=29.3
Q ss_pred CCCCCCCCCCHHH-H--------HHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEE-CHHHHHHHHHHHHH
Q ss_conf 7533687781899-9--------9999852--899888998688851799999980981699972-89999999999963
Q gi|254780466|r 200 GEKLHPTQKPEAL-L--------SRILVSS--TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM-KQDYIDIATKRIAS 267 (375)
Q Consensus 200 g~k~HPTqKP~~L-l--------eriI~~~--S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~-~~~Y~~~a~~Rl~~ 267 (375)
.+|+..++||.-+ + +.+.... .+.+++||=|--|.|=.++ +-++. |+..+....+.+.+
T Consensus 134 nEKL~~~~Fp~~i~P~TLVT~d~~~I~~F~~~~k~~~iIlKPL~G~GG~gI---------f~i~~~d~~Nl~~I~e~~~~ 204 (349)
T PRK12458 134 NNKLYFQSFPEEVRPTTHISRNREEIRAFLEESPSDKMILKPLQGSGGQGV---------FLIEKSAESNLNQILEFYSG 204 (349)
T ss_pred CCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCE---------EEECCCCHHHHHHHHHHHHC
T ss_conf 012006415554798779867999999999981588389864678888763---------88635743419999999704
No 304
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=35.31 E-value=14 Score=17.67 Aligned_cols=58 Identities=17% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHCCCCCCE----EEECCCCC-HHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 8189999999852899888----99868885-17999999809--81699972899999999999630
Q gi|254780466|r 208 KPEALLSRILVSSTKPGDI----ILDPFFGS-GTSGAVAKKLR--RSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 208 KP~~LleriI~~~S~~gDi----VLDPF~GS-GTT~~aA~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
-|+.-..|+.++.|. ||+ || |+|- --|+.|+.-.| -+-.-+|+|+--+++..+=.++.
T Consensus 134 TpEttv~Rv~lm~~R-GDL~gK~I~--vvGDDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~ 198 (354)
T COG1568 134 TPETTVSRVALMYSR-GDLEGKEIF--VVGDDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL 198 (354)
T ss_pred CCCCEEEEEEEECCC-CCCCCCEEE--EECCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf 753101344321104-675787689--97075065788986388733799831589999999999984
No 305
>PRK06917 hypothetical protein; Provisional
Probab=34.61 E-value=33 Score=15.30 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=7.6
Q ss_pred CEEEEECCCCCEEE
Q ss_conf 06999815981786
Q gi|254780466|r 311 NISATVCADGTLIS 324 (375)
Q Consensus 311 ~~~a~v~~DG~l~~ 324 (375)
.....||.-|-|..
T Consensus 349 ~~i~dVRG~GLm~g 362 (447)
T PRK06917 349 TIIGDVRGKGLLIG 362 (447)
T ss_pred CCEEEEEECCEEEE
T ss_conf 97787651561699
No 306
>KOG4058 consensus
Probab=34.47 E-value=36 Score=15.14 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=67.4
Q ss_pred HHHHH-HHCCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHC-----CCCCHHHHCCCCCCCCC
Q ss_conf 99999-8528998889986888517999999809-81699972899999999999630-----56876563024443337
Q gi|254780466|r 213 LSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASV-----QPLGNIELTVLTGKRTE 285 (375)
Q Consensus 213 leriI-~~~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~-----~~~~~~~~~~~~~~~~~ 285 (375)
++.++ +..+++....+|-=.|-|-..+||.+.| |+..|.|+|+=-+..++-+--.. .-+-...+-.++.+.-.
T Consensus 61 v~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~ 140 (199)
T KOG4058 61 VENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYR 140 (199)
T ss_pred HHHHHHHCCCCCCCCEEECCCCCCEEEHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 99999871489988178525898524466665077767743303899999999999874253310223211004455563
Q ss_pred CCCCHHHHHHCCCCCCCCEEECCCCCEEEEECCCCCEEECCEEC----CHHHHHHHHCCCCCCCCEEEEEEEEC
Q ss_conf 75523469882865877657668980699981598178698653----19999987449810067114679759
Q gi|254780466|r 286 PRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELG----SIHRVGAKVSGSETCNGWNFWYFEKL 355 (375)
Q Consensus 286 ~rvpfg~lie~g~l~~g~~L~~~~~~~~a~v~~DG~l~~~~~~g----sIh~i~a~~~~~~~cNGw~fw~~~~~ 355 (375)
..|-||.---.+.|++ +..+...++-.+++.---. ..|.||-.++ .-|.|+.+
T Consensus 141 ~vviFgaes~m~dLe~---------KL~~E~p~nt~vvacRFPLP~w~leh~igeG~d--------~VW~Yd~n 197 (199)
T KOG4058 141 NVVIFGAESVMPDLED---------KLRTELPANTRVVACRFPLPTWQLEHAIGEGLD--------RVWAYDVN 197 (199)
T ss_pred EEEEEEHHHHHHHHHH---------HHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCC--------EEEEEECC
T ss_conf 5899601787766689---------998647688737887347985325757643722--------38888378
No 307
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=34.29 E-value=31 Score=15.51 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=7.7
Q ss_pred CEEEEECCCCCEE
Q ss_conf 0699981598178
Q gi|254780466|r 311 NISATVCADGTLI 323 (375)
Q Consensus 311 ~~~a~v~~DG~l~ 323 (375)
.....||.-|-|.
T Consensus 328 ~~i~~VRG~Glm~ 340 (403)
T PRK05093 328 GVFSEIRGKGLLI 340 (403)
T ss_pred CCEEEEEECCEEE
T ss_conf 9826665412699
No 308
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=34.24 E-value=26 Score=15.94 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=4.8
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
....||.-|.+.
T Consensus 338 ~i~~vrG~Gl~~ 349 (413)
T cd00610 338 LVGDVRGRGLMI 349 (413)
T ss_pred CCEEEEEECEEE
T ss_conf 936964324499
No 309
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=33.98 E-value=36 Score=15.09 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=6.1
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|-|.
T Consensus 373 ~V~dVRG~GLm~ 384 (442)
T TIGR03372 373 LIIEARGKGLLM 384 (442)
T ss_pred CEEEEEECCEEE
T ss_conf 166856453899
No 310
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=33.75 E-value=31 Score=15.47 Aligned_cols=23 Identities=35% Similarity=0.755 Sum_probs=10.3
Q ss_pred HHHHHHHCCCCC---CEEEECCCCCH
Q ss_conf 999998528998---88998688851
Q gi|254780466|r 213 LSRILVSSTKPG---DIILDPFFGSG 235 (375)
Q Consensus 213 leriI~~~S~~g---DiVLDPF~GSG 235 (375)
+++++.....++ .+|+.|..|+|
T Consensus 188 ~~~~~~~~~~~~~iAAvi~EPi~g~g 213 (426)
T PRK08088 188 IERIFKNDAAPEDIAAIIIEPVQGEG 213 (426)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 99999744787767899977756778
No 311
>PRK04182 cytidylate kinase; Provisional
Probab=33.67 E-value=37 Score=15.06 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=8.7
Q ss_pred EECCCCCHHHHHH---HHHHCCEEE
Q ss_conf 9868885179999---998098169
Q gi|254780466|r 228 LDPFFGSGTSGAV---AKKLRRSFI 249 (375)
Q Consensus 228 LDPF~GSGTT~~a---A~~lgR~~I 249 (375)
+|-.+|||-+-+| |++||-.|+
T Consensus 5 I~g~~GSGk~tIak~LA~~lg~~~~ 29 (178)
T PRK04182 5 ISGPPGSGKTTVARLLAEKLGLKLV 29 (178)
T ss_pred EECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 9589988879999999999599387
No 312
>pfam00988 CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain. The carbamoyl-phosphate synthase domain is in the amino terminus of protein. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00289. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=33.59 E-value=37 Score=15.05 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=5.5
Q ss_pred EEEECCCCCC
Q ss_conf 8984778761
Q gi|254780466|r 42 LIFADPPYNL 51 (375)
Q Consensus 42 lI~tDPPYni 51 (375)
=++|||-|.-
T Consensus 39 E~lTDPSY~g 48 (131)
T pfam00988 39 EILTDPSYAG 48 (131)
T ss_pred EECCCCCCCC
T ss_conf 0325876577
No 313
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=33.57 E-value=16 Score=17.31 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=14.8
Q ss_pred CEEEEEEEE-CCEEEEHHHHHHHHHHHH
Q ss_conf 711467975-995712999999999876
Q gi|254780466|r 346 GWNFWYFEK-LGELHSINTLRILVRKEL 372 (375)
Q Consensus 346 Gw~fw~~~~-~~~~~~id~lR~~~r~~~ 372 (375)
|-.|+-+.- -.+.+++|+-+.+.-..|
T Consensus 273 ~~~YfRfnP~l~~~i~lDe~~~~~l~~m 300 (312)
T cd07212 273 GIPYFRFSPPLSKDIMLDETDDEDLVNM 300 (312)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 9954875888787776776999999999
No 314
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=33.32 E-value=31 Score=15.51 Aligned_cols=11 Identities=27% Similarity=0.129 Sum_probs=5.0
Q ss_pred EEEECCCCCEE
Q ss_conf 99981598178
Q gi|254780466|r 313 SATVCADGTLI 323 (375)
Q Consensus 313 ~a~v~~DG~l~ 323 (375)
...||.-|-|.
T Consensus 350 I~dvRG~GL~~ 360 (421)
T PRK05964 350 VADVRVLGAIG 360 (421)
T ss_pred EEEEEECCEEE
T ss_conf 67641046299
No 315
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=30.42 E-value=41 Score=14.73 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=6.5
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|-+.
T Consensus 372 ~V~dVRG~GL~~ 383 (452)
T PRK06943 372 QVRHLRQRGTIF 383 (452)
T ss_pred CEEEEEECCEEE
T ss_conf 888863075899
No 316
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=29.64 E-value=43 Score=14.65 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=10.7
Q ss_pred HHHHHHHHCCCCCE-EEEECC
Q ss_conf 99999986396872-999834
Q gi|254780466|r 88 WLLACRRVLKPNGT-LWVIGS 107 (375)
Q Consensus 88 wl~e~~RvLK~~Gs-i~v~~~ 107 (375)
.+..+.++|.+.|+ +.=++|
T Consensus 14 Il~vL~~~l~~~~~~VLEIaS 34 (201)
T pfam06080 14 ILSVLQSYFAKTTERVLEIAS 34 (201)
T ss_pred HHHHHHHHHCCCCCCEEEECC
T ss_conf 999999982747885799768
No 317
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=29.52 E-value=21 Score=16.48 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC---CCEEEEECCH------HHHHHHHHHHHHC
Q ss_conf 9899999889999999986396---8729998346------8889999876405
Q gi|254780466|r 77 SFEAYDAFTRAWLLACRRVLKP---NGTLWVIGSY------HNIFRIGTMLQNL 121 (375)
Q Consensus 77 s~~~Y~~f~~~wl~e~~RvLK~---~Gsi~v~~~~------~~i~~i~~~l~~~ 121 (375)
..++|.+-...=+......+.. =.++|+-|+. ..+-++-..+.+.
T Consensus 63 ~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~ 116 (416)
T COG0635 63 PVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALREL 116 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 399999999999999886227887278999769832677999999999999997
No 318
>PRK10941 putative transcriptional regulator; Provisional
Probab=29.24 E-value=5.9 Score=19.88 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHCCEE--EEEEECHHHHHHHHHH
Q ss_conf 368778189999999852899888-9986888517999999809816--9997289999999999
Q gi|254780466|r 203 LHPTQKPEALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSF--IGIEMKQDYIDIATKR 264 (375)
Q Consensus 203 ~HPTqKP~~LleriI~~~S~~gDi-VLDPF~GSGTT~~aA~~lgR~~--IGiE~~~~Y~~~a~~R 264 (375)
++|--+|-.++ +......|++ ++|||-|.--+...+...=+.- -+.|+.+++.+.|..|
T Consensus 116 ~~gV~fP~hfi---lr~~~~d~e~~~IDPfnG~~Ls~~~L~~~L~~~~g~~~el~~~~L~~a~~~ 177 (269)
T PRK10941 116 LMPVIFPTQLI---LRADWLDGEMWLINPFNGETLDEHTLEVWLKGNISPSAELFNEDLDEADNI 177 (269)
T ss_pred CCEECCCCCEE---EEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCHH
T ss_conf 10231663227---875058876688678898578899999999864298456799982769989
No 319
>TIGR01355 cyt_deam_dimer cytidine deaminase; InterPro: IPR006263 Cytidine deaminase is a homodimeric zinc metalloprotein found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals, IPR006262 from INTERPRO. Both types may act on deoxycytidine as well as cytidine. ; GO: 0004126 cytidine deaminase activity, 0046087 cytidine metabolic process.
Probab=28.93 E-value=25 Score=16.12 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=37.1
Q ss_pred CCCHHHHHHHCCC-CCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHH--H-HHHH-HHHH--HHHHCC
Q ss_conf 1725998972841-471189847787615587133367851300134435778989999--9-8899-9999--998639
Q gi|254780466|r 25 KGNSISVLEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--A-FTRA-WLLA--CRRVLK 97 (375)
Q Consensus 25 ~GDcl~~l~~Lpd-~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~--~-f~~~-wl~e--~~RvLK 97 (375)
||+|.+.|+.|-+ .+|.+-++||-=. ++|.- .-+-|-|.+..+|+ + |.-+ .+.. ..++|.
T Consensus 109 CghCrQFl~E~~~A~~ikIll~~~~~~----------~dSds---aadsdGF~~L~~yLP~~yFgp~dl~~~yf~~~LL~ 175 (311)
T TIGR01355 109 CGHCRQFLNEIRNASSIKILLPDPHNK----------EDSDS---AADSDGFLSLQSYLPDRYFGPDDLLIKYFSAPLLL 175 (311)
T ss_pred CCCHHHHHHHHCCHHHHHCCCCCHHHC----------CCCCH---HHCCCCCCCHHHHCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 851778998605831420106872220----------46610---11023554426638510478300231230444676
No 320
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=28.91 E-value=44 Score=14.57 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=4.4
Q ss_pred EEEEECCCCCE
Q ss_conf 69998159817
Q gi|254780466|r 312 ISATVCADGTL 322 (375)
Q Consensus 312 ~~a~v~~DG~l 322 (375)
.+..||.=|-+
T Consensus 355 ~v~dVRG~GL~ 365 (448)
T PRK08593 355 FVGDVRGKGLS 365 (448)
T ss_pred CEEEECCCCEE
T ss_conf 78873025517
No 321
>PRK07481 hypothetical protein; Provisional
Probab=28.55 E-value=41 Score=14.74 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=11.3
Q ss_pred HHHHHHHHCC--CCCCEEEECCCCCH
Q ss_conf 9999998528--99888998688851
Q gi|254780466|r 212 LLSRILVSST--KPGDIILDPFFGSG 235 (375)
Q Consensus 212 LleriI~~~S--~~gDiVLDPF~GSG 235 (375)
.+++.|.... +...+|+.|..|+|
T Consensus 200 ~le~~i~~~~~~~iAavi~EPiqg~g 225 (448)
T PRK07481 200 LLEREIAFQGPDTIAAFIAEPVQGAG 225 (448)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 99999874188847999960466679
No 322
>pfam06460 NSP13 Coronavirus NSP13. This family covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase function.
Probab=28.43 E-value=45 Score=14.52 Aligned_cols=88 Identities=24% Similarity=0.444 Sum_probs=49.0
Q ss_pred CCHHHH---CCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 433553---27085172599897284147118984778761558713336785130013443577898999998899999
Q gi|254780466|r 14 NSIFEW---KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90 (375)
Q Consensus 14 ~~~~~~---~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~ 90 (375)
|++.+| -|..+.|||... .++..+||||.|- |. +. ...+++.+.. -+.|-.|+. .
T Consensus 97 nDi~dyvSDa~~s~~gDc~t~---~~~~k~DliiSDm-Yd----~~-----~k~~~~~n~s---k~gfF~yl~------~ 154 (300)
T pfam06460 97 NDIVDYVSDADASVLGDCHTL---YTEDKFDLIISDM-YD----GR-----TKSIDGENNS---KEGFFTYIC------G 154 (300)
T ss_pred CCHHHHHCCCCCEEECCCEEE---CCCCEEEEEEEEC-CC----CC-----CCCCCCCCCC---CCHHHHHHH------H
T ss_conf 751553034561787132365---4786140897643-37----76-----5303664343---201899999------9
Q ss_pred HHHHHCCCCCEEEEE---CCHHHHHHHHHHHHHCCCCE
Q ss_conf 999863968729998---34688899998764057860
Q gi|254780466|r 91 ACRRVLKPNGTLWVI---GSYHNIFRIGTMLQNLNFWI 125 (375)
Q Consensus 91 e~~RvLK~~Gsi~v~---~~~~~i~~i~~~l~~~gf~~ 125 (375)
-.+..|.-+||+.|- .||.. .+..+++...||-
T Consensus 155 ~i~~kLALGGSvaiKiTE~Sw~~--~LY~l~~~F~~wt 190 (300)
T pfam06460 155 FIREKLALGGSIAIKITEFSWNA--QLYELMQYFSFWT 190 (300)
T ss_pred HHHHHHCCCCEEEEEEEEEECCH--HHHHHHHHHHHEE
T ss_conf 98765405765899987400689--9999985411205
No 323
>KOG1500 consensus
Probab=28.04 E-value=46 Score=14.48 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=46.1
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC----------C
Q ss_conf 28998889986888517999999809-816999728999999999996305687656302444333775----------5
Q gi|254780466|r 220 STKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR----------V 288 (375)
Q Consensus 220 ~S~~gDiVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~r----------v 288 (375)
+-..|-+|||-=+|||---.-|..-| ++-..+|-++ ..+.|++-++.- ...+.+.+.++|-++.. -
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLPEk~DviISE 250 (517)
T KOG1500 174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASN--NLADRITVIPGKIEDIELPEKVDVIISE 250 (517)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHH-HHHHHHHHHHCC--CCCCEEEECCCCCCEECCCCCCCEEEEC
T ss_conf 3457748998158824899999873865389874567-999999987436--6320378705632010375103478725
Q ss_pred CHH-----------HHHHCCCCCCCCEEECCCCCEE
Q ss_conf 234-----------6988286587765766898069
Q gi|254780466|r 289 AFN-----------LLVERGLIQPGQILTNAQGNIS 313 (375)
Q Consensus 289 pfg-----------~lie~g~l~~g~~L~~~~~~~~ 313 (375)
|+| +|+.|-+|+|....|---++..
T Consensus 251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiH 286 (517)
T KOG1500 251 PMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIH 286 (517)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 621411108889999999874287774467525354
No 324
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.96 E-value=46 Score=14.47 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHH------HHHHHHHCCEEEEEEE
Q ss_conf 18999999985289988899868885179------9999980981699972
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTS------GAVAKKLRRSFIGIEM 253 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT------~~aA~~lgR~~IGiE~ 253 (375)
....+.|-|....++||+++ -|.+||.+ +.+|++.|-+.|++-=
T Consensus 87 ~~~if~~ql~~~~~~gDili-~iS~sG~s~nii~a~~~ak~~g~~~i~ltg 136 (177)
T cd05006 87 YEEVFSRQVEALGQPGDVLI-GISTSGNSPNVLKALEAAKERGMKTIALTG 136 (177)
T ss_pred HHHHHHHHHHHHCCCCCEEE-EECCCCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999997446898899-981899998999999999987998999987
No 325
>TIGR00652 DapF diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity . Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction . Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=27.79 E-value=28 Score=15.80 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=24.9
Q ss_pred CCCCCCCHHH-------H-HHHHHHCCCCCC-EEEECCCCCHHHHHH--HHH
Q ss_conf 3687781899-------9-999985289988-899868885179999--998
Q gi|254780466|r 203 LHPTQKPEAL-------L-SRILVSSTKPGD-IILDPFFGSGTSGAV--AKK 243 (375)
Q Consensus 203 ~HPTqKP~~L-------l-eriI~~~S~~gD-iVLDPF~GSGTT~~a--A~~ 243 (375)
.||...|+.. + +--|...|.|-. -=.--=||||++|.| |.+
T Consensus 195 ~he~F~Peg~NV~Fv~~~~~~~i~~rtyERGV~G~T~ACGTGa~A~a~aa~~ 246 (294)
T TIGR00652 195 YHERFAPEGVNVNFVQVVGEDEIKLRTYERGVAGETLACGTGACASAIAAVK 246 (294)
T ss_pred CCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 3835576872388989768988999998805445544651479999999987
No 326
>KOG1540 consensus
Probab=27.11 E-value=47 Score=14.38 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCCCCEEEECCCCCHHHHHH----HHH----HCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 89988899868885179999----998----098169997289999999999963
Q gi|254780466|r 221 TKPGDIILDPFFGSGTSGAV----AKK----LRRSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 221 S~~gDiVLDPF~GSGTT~~a----A~~----lgR~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
..+|.-|||--+|||-++-- +.. -+-+-+.+|+|++-...+++|-+.
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 7778758983477525677798761134577776179993898999999877751
No 327
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=27.10 E-value=47 Score=14.37 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=40.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 98889986888517999999809816999728999999999996305
Q gi|254780466|r 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 223 ~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
++.-+||.=||+|--++-=-+.|-.-.++|+++..++.++...++..
T Consensus 30 ~pgk~LDlgcG~GRNslyLa~~G~~VtavD~n~~aL~~l~~ia~~e~ 76 (192)
T pfam03848 30 KPGKALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKEN 76 (192)
T ss_pred CCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 99746660478973189998689917999799999999999999709
No 328
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=26.82 E-value=48 Score=14.34 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=42.2
Q ss_pred HHHHCCCCCCEEEECCCCCHHHHHH-HHHHC--CEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 9985289988899868885179999-99809--81699972899999999999630
Q gi|254780466|r 216 ILVSSTKPGDIILDPFFGSGTSGAV-AKKLR--RSFIGIEMKQDYIDIATKRIASV 268 (375)
Q Consensus 216 iI~~~S~~gDiVLDPF~GSGTT~~a-A~~lg--R~~IGiE~~~~Y~~~a~~Rl~~~ 268 (375)
+-...-.||+-|++.=.|||.-.++ |...| =+-+++|+.++.++.|.+-++..
T Consensus 87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF 142 (256)
T ss_pred HHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHH
T ss_conf 98709998878998156805999999996488845999995278999999999984
No 329
>COG0850 MinC Septum formation inhibitor [Cell division and chromosome partitioning]
Probab=26.68 E-value=23 Score=16.33 Aligned_cols=42 Identities=26% Similarity=0.422 Sum_probs=23.3
Q ss_pred HHHHHCCCCCCCCEEECCCCCEE--------EEECCCCCEE-ECCEECCHH
Q ss_conf 46988286587765766898069--------9981598178-698653199
Q gi|254780466|r 291 NLLVERGLIQPGQILTNAQGNIS--------ATVCADGTLI-SGTELGSIH 332 (375)
Q Consensus 291 g~lie~g~l~~g~~L~~~~~~~~--------a~v~~DG~l~-~~~~~gsIh 332 (375)
..++-+-.|.-|+..|...+... |.|.|||++. ++--+|-+|
T Consensus 111 ~~~ii~~~VRSGQ~Iy~~~gDlivlG~VnpGAeIiA~GnI~VyG~LRGrA~ 161 (219)
T COG0850 111 KTLIIETPVRSGQRIYAPGGDLIVLGDVNPGAEIIADGNIHVYGKLRGRAH 161 (219)
T ss_pred CCEEEEEECCCCCEEEEECCCEEEECCCCCCCEEEECCCEEEEEECCCEEE
T ss_conf 627997421278879950898999835799988995895899997144498
No 330
>PRK10037 cell division protein; Provisional
Probab=26.64 E-value=48 Score=14.32 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHCCCCC-C-EEEECCCCCHHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHHH
Q ss_conf 781899999998528998-8-89986888517999999809-8169997289999999999963
Q gi|254780466|r 207 QKPEALLSRILVSSTKPG-D-IILDPFFGSGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRIAS 267 (375)
Q Consensus 207 qKP~~LleriI~~~S~~g-D-iVLDPF~GSGTT~~aA~~lg-R~~IGiE~~~~Y~~~a~~Rl~~ 267 (375)
+.+..|+..+........ + +++|.=.|.+.-..++..+- +..+-+.- +....+ ||.+
T Consensus 100 ~~~~~l~~~l~~l~~~~~~~~vliD~P~g~s~~~~~~l~~AD~vLvVv~a--Da~s~~--~L~q 159 (250)
T PRK10037 100 TTLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLLSLCDHSLAIVNV--DANCHI--RLHQ 159 (250)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECC--CHHHHH--HHHH
T ss_conf 51799999986200257899899965999829999999857878998367--877899--8734
No 331
>PRK09792 PLP-dependent GABA aminotransferase; Provisional
Probab=26.55 E-value=47 Score=14.39 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=5.8
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|.|.
T Consensus 343 ~v~~VRG~Glm~ 354 (421)
T PRK09792 343 AIAAVRGLGSMI 354 (421)
T ss_pred CEEEEEECEEEE
T ss_conf 889854141899
No 332
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=26.54 E-value=49 Score=14.31 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=11.2
Q ss_pred EEECCCCCHHHHHH---HHHHCCEEE
Q ss_conf 99868885179999---998098169
Q gi|254780466|r 227 ILDPFFGSGTSGAV---AKKLRRSFI 249 (375)
Q Consensus 227 VLDPF~GSGTT~~a---A~~lgR~~I 249 (375)
-.|--.|||.|-+| |++||-.|+
T Consensus 3 aIdGpagsGKsT~ak~lA~~l~~~~l 28 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGLPYL 28 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 88689978989999999999099077
No 333
>PRK07482 hypothetical protein; Provisional
Probab=26.20 E-value=49 Score=14.27 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=6.3
Q ss_pred EEEEECCCCCEE
Q ss_conf 699981598178
Q gi|254780466|r 312 ISATVCADGTLI 323 (375)
Q Consensus 312 ~~a~v~~DG~l~ 323 (375)
.+..||.-|-+.
T Consensus 373 ~v~~VRG~GL~~ 384 (461)
T PRK07482 373 LVGEVRGVGMLA 384 (461)
T ss_pred CEEEEEECCEEE
T ss_conf 878888067589
No 334
>COG1641 Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=48 Score=14.34 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=16.0
Q ss_pred EECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCH
Q ss_conf 728999999999996305687656302444333775523
Q gi|254780466|r 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290 (375)
Q Consensus 252 E~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~rvpf 290 (375)
+++++.+-...+||-..- ..|..++....|+--|.+..
T Consensus 251 D~~~Ei~G~l~E~Ll~~g-a~Dv~~~p~~mKK~RP~~~l 288 (387)
T COG1641 251 DLSGEILGYLIERLLEAG-ALDVFITPIYMKKGRPAHLL 288 (387)
T ss_pred CCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCEE
T ss_conf 558878889999997478-60699866245789998558
No 335
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=26.10 E-value=48 Score=14.35 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=12.4
Q ss_pred HHHHHHHHC-CCCCCEEEECCCCCH
Q ss_conf 999999852-899888998688851
Q gi|254780466|r 212 LLSRILVSS-TKPGDIILDPFFGSG 235 (375)
Q Consensus 212 LleriI~~~-S~~gDiVLDPF~GSG 235 (375)
-++++|... ..-..+|+.|..|+|
T Consensus 189 ~l~~~l~~~~~~iAavI~EPi~g~~ 213 (429)
T PRK12389 189 SYKEALDKWGDEVAAVLVEPIVGNF 213 (429)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 9999998458966899960223678
No 336
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=26.06 E-value=49 Score=14.28 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=8.0
Q ss_pred CCCEEEECCCCCH
Q ss_conf 9888998688851
Q gi|254780466|r 223 PGDIILDPFFGSG 235 (375)
Q Consensus 223 ~gDiVLDPF~GSG 235 (375)
...+|+.|..|+|
T Consensus 223 iAavi~EPiqg~g 235 (446)
T PRK06058 223 LAAVIIEPIQGEG 235 (446)
T ss_pred EEEEEECCCCCCC
T ss_conf 7999972776888
No 337
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=25.88 E-value=50 Score=14.24 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 1899999998528998889986888517999999809816999728999999999996305
Q gi|254780466|r 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269 (375)
Q Consensus 209 P~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~ 269 (375)
+.++++.+=+ |..||.=++-..+||...= .+++|++...+++....
T Consensus 232 ~~~~i~~l~k--------~~~p~~vn~~a~~aa~~aL-------~d~~~~~~~~~~~~~~R 277 (356)
T PRK04870 232 HPAWIAELDK--------VRPPYNVNVLTQATALFAL-------EHVDVLDAQAAELRAER 277 (356)
T ss_pred CHHHHHHHHH--------HCCCCCCHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHH
T ss_conf 9999999977--------3489873399999999997-------49588999999999999
No 338
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=25.53 E-value=51 Score=14.20 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=8.0
Q ss_pred CCCCEEEECCCCC
Q ss_conf 4711898477876
Q gi|254780466|r 38 KSVDLIFADPPYN 50 (375)
Q Consensus 38 ~sVDlI~tDPPYn 50 (375)
+-|+|-+.||-+.
T Consensus 31 dvI~l~ig~pdf~ 43 (390)
T PRK07309 31 GILKLTLGEPDFT 43 (390)
T ss_pred CEEECCCCCCCCC
T ss_conf 9089989789999
No 339
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=25.49 E-value=48 Score=14.37 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=62.4
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH--------HCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
Q ss_conf 99999985289988899868885179999998--------0981699972899999999999630568765630244433
Q gi|254780466|r 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKK--------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283 (375)
Q Consensus 212 LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~--------lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~ 283 (375)
-+.++|..+-..|-+|-=-.-| .++.++.+ -||+-.|+--.+|... ..
T Consensus 111 ~l~~l~~~~~~~gk~vaaiCHG--p~~L~~~~~~~G~~l~~Gk~vT~fs~~EE~~~--------------------~~-- 166 (221)
T cd03141 111 DLQDLLREFYENGKVVAAVCHG--PAALLNVKLSDGKSLVAGKTVTGFTNEEEEAA--------------------GL-- 166 (221)
T ss_pred HHHHHHHHHHHCCCEEEEECCH--HHHHHHHCCCCCCEEECCCEEEECCCHHHHHC--------------------CC--
T ss_conf 9999999999749859997630--79887500568971556737851597998741--------------------54--
Q ss_pred CCCCCCHHHHHHCCCCCCCCEEECCCCCEEEEECCCCCEEECCEECCHHHHHHHHC
Q ss_conf 37755234698828658776576689806999815981786986531999998744
Q gi|254780466|r 284 TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVS 339 (375)
Q Consensus 284 ~~~rvpfg~lie~g~l~~g~~L~~~~~~~~a~v~~DG~l~~~~~~gsIh~i~a~~~ 339 (375)
...+||- +|.-+-+.|-....+. .+...|-.||.|+++..-.|-+.+|-++-
T Consensus 167 -~~~~Pf~--le~~l~~~Ga~~~~~~-~~~~~vvvDg~LITGqnP~Sa~~~a~~~v 218 (221)
T cd03141 167 -KKVVPFL--LEDELKELGANYVKAE-PWAEFVVVDGRLITGQNPASAAAVAEALV 218 (221)
T ss_pred -CCCCCCC--HHHHHHHCCCEEEECC-CCCCCEEEECCEEECCCCHHHHHHHHHHH
T ss_conf -5668747--8999998699886068-99873898299776879245899999999
No 340
>pfam09673 TrbC_Ftype Type-F conjugative transfer system pilin assembly protein. This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.
Probab=24.92 E-value=52 Score=14.13 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHCCCCCC-EEEECCCCC--HHHHHHHHHHCC---EEEEEEECHHHHH
Q ss_conf 7818999999985289988-899868885--179999998098---1699972899999
Q gi|254780466|r 207 QKPEALLSRILVSSTKPGD-IILDPFFGS--GTSGAVAKKLRR---SFIGIEMKQDYID 259 (375)
Q Consensus 207 qKP~~LleriI~~~S~~gD-iVLDPF~GS--GTT~~aA~~lgR---~~IGiE~~~~Y~~ 259 (375)
--|.+.|++++..++..|- +||=-|.+- ..|..+..+|.+ ...|+.|||.-++
T Consensus 7 SMP~~sLk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~l~~~~~~~~~v~IdP~lF~ 65 (113)
T pfam09673 7 SMPDESLKQLLRQAARAGVPVVLRGFVNGSLKETAAAIQELVKKGDRDAGVQIDPTLFR 65 (113)
T ss_pred CCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECHHHHH
T ss_conf 89999999999999981977999678899889999999999861787886579979996
No 341
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=23.95 E-value=54 Score=14.02 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHH-HHHHHCCEEEEEEECHHHH
Q ss_conf 687781899999998528998889986888517999-9998098169997289999
Q gi|254780466|r 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYI 258 (375)
Q Consensus 204 HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~-aA~~lgR~~IGiE~~~~Y~ 258 (375)
+++.|--++...+| +.-=|+|+=.-.|+|.-.. +|+++|...||.+.|..|.
T Consensus 204 ~D~~k~k~~a~~li---~~GaDVI~~~ag~~~~gv~~~A~~~~~~~iGvdsDQ~~~ 256 (345)
T COG1744 204 SDPAKGKEAANALI---DQGADVIYPAAGGTGVGVFQAAKELGAYAIGVDSDQSYL 256 (345)
T ss_pred CCCHHHHHHHHHHH---HCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCC
T ss_conf 78277899999999---769989986788876229999998089716885210003
No 342
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=23.75 E-value=48 Score=14.35 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=4.2
Q ss_pred EEEECCCCCEE
Q ss_conf 99981598178
Q gi|254780466|r 313 SATVCADGTLI 323 (375)
Q Consensus 313 ~a~v~~DG~l~ 323 (375)
...||.-|-+.
T Consensus 313 i~~vRG~Gl~~ 323 (377)
T PRK02936 313 VKNIRGKGLMI 323 (377)
T ss_pred EEEEEECCEEE
T ss_conf 67712556999
No 343
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=23.45 E-value=56 Score=13.96 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=17.2
Q ss_pred EECCCHHHHHHHCCCCCCCEEEECC
Q ss_conf 8517259989728414711898477
Q gi|254780466|r 23 IIKGNSISVLEKLPAKSVDLIFADP 47 (375)
Q Consensus 23 I~~GDcl~~l~~Lpd~sVDlI~tDP 47 (375)
....|..+.+..+.++..|+|++|=
T Consensus 34 ~~a~~g~~al~~~~~~~~Dlil~D~ 58 (129)
T PRK10610 34 EEAEDGVDALNKLQAGGFGFVISDW 58 (129)
T ss_pred EEECCHHHHHHHHHHCCCCEEEEEC
T ss_conf 9989999999999858999999818
No 344
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.44 E-value=56 Score=13.96 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHCCCCCC-EEEE-CCCCCHHHH
Q ss_conf 18999999985289988-8998-688851799
Q gi|254780466|r 209 PEALLSRILVSSTKPGD-IILD-PFFGSGTSG 238 (375)
Q Consensus 209 P~~LleriI~~~S~~gD-iVLD-PF~GSGTT~ 238 (375)
|.+.++.+-..+.+-|- +|+| -+.|-|-||
T Consensus 245 p~~yl~~lr~lc~~~gillI~DEV~TGfGRtG 276 (462)
T PRK06916 245 PKGYLKGLRNLCTKYNVLFITDEVATGFGRTG 276 (462)
T ss_pred CHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
T ss_conf 78999999999860597267254302787556
No 345
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=23.30 E-value=56 Score=13.94 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=13.5
Q ss_pred ECHHHHHHHHHHHHHCCCCCHH
Q ss_conf 2899999999999630568765
Q gi|254780466|r 253 MKQDYIDIATKRIASVQPLGNI 274 (375)
Q Consensus 253 ~~~~Y~~~a~~Rl~~~~~~~~~ 274 (375)
+.++|-+.+++=+++.+.+.+.
T Consensus 283 ~~~~f~~Ya~qVv~NAkaLa~~ 304 (422)
T PRK13034 283 LEPGFKTYIDQVIANAQALAEV 304 (422)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6876999999999999999999
No 346
>PRK07036 hypothetical protein; Provisional
Probab=23.01 E-value=38 Score=15.00 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=7.6
Q ss_pred CEEEEECCCCCEE
Q ss_conf 0699981598178
Q gi|254780466|r 311 NISATVCADGTLI 323 (375)
Q Consensus 311 ~~~a~v~~DG~l~ 323 (375)
..+..||.-|-|.
T Consensus 372 p~v~dVRG~GLm~ 384 (466)
T PRK07036 372 PLVGDVRGDHLMA 384 (466)
T ss_pred CCEEEEEECCEEE
T ss_conf 9778886323899
No 347
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=22.63 E-value=58 Score=13.86 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=33.5
Q ss_pred HHCCCCCCEEEECCCCCHHHHH----HHHHHCCEEEEEEECHHHHHHHHH
Q ss_conf 8528998889986888517999----999809816999728999999999
Q gi|254780466|r 218 VSSTKPGDIILDPFFGSGTSGA----VAKKLRRSFIGIEMKQDYIDIATK 263 (375)
Q Consensus 218 ~~~S~~gDiVLDPF~GSGTT~~----aA~~lgR~~IGiE~~~~Y~~~a~~ 263 (375)
++--.+||.|+= .|.|..|. +|+.+|-+-|++|.+++-.++|++
T Consensus 161 ~~~v~~g~~V~V--~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~~rle~a~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIV--IGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred HCCCCCCCEEEE--ECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 117899988999--897489999999999859979999499999999996
No 348
>TIGR00497 hsdM type I restriction-modification system, M subunit; InterPro: IPR004546 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the M subunit (HsdM) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC. The M subunit (HsdM) functions in methylation of specific adenine residues, which is required for both restriction and modification activities , , . Methylation of specific residues prevents the host from digesting its own genome via its restriction enzymes. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=22.00 E-value=59 Score=13.78 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-HHHHC------CEEEEEEECHHHHHHHHHHHH
Q ss_conf 875336877818999999985289988899868885179999-99809------816999728999999999996
Q gi|254780466|r 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLR------RSFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 199 ~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~a-A~~lg------R~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
.|......|--.+|+.++.......-+-|.||.||+|+.... .+-+| ..|.|-|++..-+.+++-.+-
T Consensus 199 ~gg~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~cg~g~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~c~~~~~ 273 (516)
T TIGR00497 199 SGGEFFTPQDVSELLAKIALGGKDTVDDVYDPCCGSGSLLLQFSKVLGKDKNSLKGYFGQEINLTTYNLCRLNLF 273 (516)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHCCHHHHHHHHHHH
T ss_conf 666544625589898876404520023444310475136778787732310112222021001103445555455
No 349
>KOG1269 consensus
Probab=21.86 E-value=49 Score=14.30 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCEE
Q ss_conf 87781899999998528998889
Q gi|254780466|r 205 PTQKPEALLSRILVSSTKPGDII 227 (375)
Q Consensus 205 PTqKP~~LleriI~~~S~~gDiV 227 (375)
-+++++.+++++-.. ++||.+.
T Consensus 190 ~~~~~~~~y~Ei~rv-~kpGG~~ 211 (364)
T KOG1269 190 HAPDLEKVYAEIYRV-LKPGGLF 211 (364)
T ss_pred CCCCHHHHHHHHHCC-CCCCCEE
T ss_conf 478699999988503-6777168
No 350
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=28 Score=15.75 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=14.3
Q ss_pred CCCHHHHHHCCCCCCCCEEECCCCCEEEEE
Q ss_conf 552346988286587765766898069998
Q gi|254780466|r 287 RVAFNLLVERGLIQPGQILTNAQGNISATV 316 (375)
Q Consensus 287 rvpfg~lie~g~l~~g~~L~~~~~~~~a~v 316 (375)
-||.| .||.|.|++|+.++.........|
T Consensus 247 tv~vG-rVEsG~i~~g~~v~~~p~~~~~ev 275 (428)
T COG5256 247 TVPVG-RVESGVIKPGQKVTFMPAGVVGEV 275 (428)
T ss_pred EEEEE-EEEEEEECCCCEEEEECCCCEEEE
T ss_conf 47887-886134516987999648612787
No 351
>TIGR00394 lac_pts_IIC PTS system, lactose-specific IIC component; InterPro: IPR004801 This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane.
Probab=21.43 E-value=51 Score=14.19 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=21.9
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHH-------HHHHCCEEEE
Q ss_conf 9999985289988899868885179999-------9980981699
Q gi|254780466|r 213 LSRILVSSTKPGDIILDPFFGSGTSGAV-------AKKLRRSFIG 250 (375)
Q Consensus 213 leriI~~~S~~gDiVLDPF~GSGTT~~a-------A~~lgR~~IG 250 (375)
..++|.+.| .+-| =.|+|||.|++| |+.-..|.||
T Consensus 277 ~~~vit~gT--~~fi-~~~GGTGATLvVPF~~~w~~kS~~~kAiG 318 (430)
T TIGR00394 277 ADKVITSGT--QMFI-VTFGGTGATLVVPFLFLWLAKSKRNKAIG 318 (430)
T ss_pred HHHHHHCCH--HHHH-HHCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 678874032--5665-41589716888999999998655411232
No 352
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=21.42 E-value=61 Score=13.71 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=31.8
Q ss_pred HHHHHHHHHH----CCCCCCEEEECCCCCHHHHHHHHHHC-C-EEEEE
Q ss_conf 8999999985----28998889986888517999999809-8-16999
Q gi|254780466|r 210 EALLSRILVS----STKPGDIILDPFFGSGTSGAVAKKLR-R-SFIGI 251 (375)
Q Consensus 210 ~~LleriI~~----~S~~gDiVLDPF~GSGTT~~aA~~lg-R-~~IGi 251 (375)
+..+ .++.. ...+-..||=+|.||..++..+..+| + -||+|
T Consensus 143 ~d~~-~iL~~~y~~~~~~~~g~~HCftg~~E~a~~~ld~gd~~~yiSi 189 (269)
T TIGR00010 143 EDVL-DILREYYAEKAPKVGGVLHCFTGDAELAKKLLDLGDLLFYISI 189 (269)
T ss_pred HHHH-HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 9999-9999998427877875798148888999999606987999972
No 353
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=21.21 E-value=62 Score=13.68 Aligned_cols=86 Identities=14% Similarity=-0.016 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC
Q ss_conf 77818999999985289988899868885179999998098169997289999999999963056876563024443337
Q gi|254780466|r 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285 (375)
Q Consensus 206 TqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~ 285 (375)
.++-.++...+|. +-=|+|+ +-+|+-....||++.|...||++.|..+.. | +. +.....|+-.
T Consensus 165 ~~~~~~~a~~l~~---~GaDVI~-~~ag~~gv~~aa~e~g~~~IG~d~dq~~~~----------p--~~-vltS~vk~~~ 227 (258)
T cd06353 165 PAKEKEAALALID---QGADVIY-QHTDSPGVIQAAEEKGVYAIGYVSDMSKFA----------P--KA-VLTSAVWNWG 227 (258)
T ss_pred CHHHHHHHHHHHH---CCCCEEE-ECCCCHHHHHHHHHCCCEEEECCCCHHHHC----------C--CE-EEEEEEECHH
T ss_conf 2899999999997---4998897-448975899999972987995467666648----------9--80-9999997668
Q ss_pred -CCCCHHHHHHCCCCCCCCEEECC
Q ss_conf -75523469882865877657668
Q gi|254780466|r 286 -PRVAFNLLVERGLIQPGQILTNA 308 (375)
Q Consensus 286 -~rvpfg~lie~g~l~~g~~L~~~ 308 (375)
.-...-.-+..|-+++|...++.
T Consensus 228 ~~~~~~i~~~~~G~~~gg~~~~gl 251 (258)
T cd06353 228 PYYVAAVKAVLDGTWKGEDYWGGL 251 (258)
T ss_pred HHHHHHHHHHHCCCCCCCCEEECC
T ss_conf 999999999986998998789615
No 354
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=21.00 E-value=62 Score=13.65 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=34.6
Q ss_pred HHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHH
Q ss_conf 9999998098169997289999999999963056876563024443337755234
Q gi|254780466|r 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291 (375)
Q Consensus 237 T~~aA~~lgR~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~~~~~~~~~rvpfg 291 (375)
-...|+.+|-..+-++...+.-+..++-++.-.|..- ++.+-+..+-.|+||||
T Consensus 133 ~~~iA~a~G~~~~~v~~~~el~~al~~a~~~~gP~li-eV~idp~e~~~P~v~~g 186 (186)
T cd02015 133 FVKLAEAYGIKGLRVEKPEELEAALKEALASDGPVLL-DVLVDPEENVLPMVPPG 186 (186)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEE-EEEECCCCCCCCCCCCC
T ss_conf 6899997597699978999999999999848997999-99988987756888988
No 355
>KOG1158 consensus
Probab=20.67 E-value=63 Score=13.61 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=5.7
Q ss_pred CCCCCCCC-EEEEEE
Q ss_conf 49810067-114679
Q gi|254780466|r 339 SGSETCNG-WNFWYF 352 (375)
Q Consensus 339 ~~~~~cNG-w~fw~~ 352 (375)
|+-..|-| |-|.-.
T Consensus 519 ~~~~~~~~~~Lf~Gc 533 (645)
T KOG1158 519 QGPKFGGGMWLFFGC 533 (645)
T ss_pred CCCCCCCCEEEEEEC
T ss_conf 176678655999827
No 356
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=20.64 E-value=63 Score=13.61 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHH---HHCCCCCCEEEECCCCCHHHH---HHHH-HH--CCEEEEEEECHHHHHHHHHHHH
Q ss_conf 68778189999999---852899888998688851799---9999-80--9816999728999999999996
Q gi|254780466|r 204 HPTQKPEALLSRIL---VSSTKPGDIILDPFFGSGTSG---AVAK-KL--RRSFIGIEMKQDYIDIATKRIA 266 (375)
Q Consensus 204 HPTqKP~~LleriI---~~~S~~gDiVLDPF~GSGTT~---~aA~-~l--gR~~IGiE~~~~Y~~~a~~Rl~ 266 (375)
|||..=.+|++... -..-.++..+.++=+||++-. .-|. +. .-.|+.+|++.++.+.+.++|.
T Consensus 54 YptR~E~~IL~~~~~eIa~~i~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~ 125 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 853789999999899999855899769974688724589999999854997428865176999999998742
No 357
>pfam08192 Peptidase_S64 Peptidase family S64. This family of fungal proteins is involved in the processing of membrane bound transcription factor Stp1. The processing causes the signalling domain of Stp1 to be passed to the nucleus where several permease genes are induced. The permeases are important for uptake of amino acids, and processing of tp1 only occurs in an amino acid-rich environment. This family is predicted to be distantly related to the trypsin family (MEROPS:S1) and to have a typical trypsin-like catalytic triad.
Probab=20.57 E-value=38 Score=14.94 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCHHHHCCCCCCCCCCCCCHHHHH--HCCCCCCCCEEECCCCCEEEEECCCCCEEECCEEC
Q ss_conf 876563024443337755234698--82865877657668980699981598178698653
Q gi|254780466|r 271 LGNIELTVLTGKRTEPRVAFNLLV--ERGLIQPGQILTNAQGNISATVCADGTLISGTELG 329 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~rvpfg~li--e~g~l~~g~~L~~~~~~~~a~v~~DG~l~~~~~~g 329 (375)
+.++.-.+++.++-.|+..||..| ||.+++ .+-...|.++.|-.|.+.+..|
T Consensus 457 ~~~el~~i~~~~~~~~~~kFGQvvWGER~~i~-------~~LSD~AIIKvn~~l~C~N~LG 510 (644)
T pfam08192 457 FLDELEEIFPNKNWQPENKFGQVVWGERTLIN-------KKLSDFAIIKVNKSLKCQNFLG 510 (644)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHC-------CCCCCEEEEEECCCCEEEECCC
T ss_conf 99999986331045876756625663133330-------4455327999668841430347
Done!