HHsearch alignment for GI: 254780466 and conserved domain: pfam01170

>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.

Probab=97.69  E-value=0.00017  Score=47.42  Aligned_cols=64  Identities=23%  Similarity=0.457  Sum_probs=45.4

Q ss_pred             CEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             08517259989728414711898477876155871333678513001344357789899999889999999986396872
Q gi|254780466|r   22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT  101 (375)
Q Consensus        22 kI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gs  101 (375)
T Consensus        82 ~~~~~D~~~l--~~~~~~~d~Iv~nPPYG~r~~~----------------------~~~~~~ly~~~~~~~~~~~~-g~~  136 (171)
T pfam01170        82 EFVQADAADL--PLLNGSVDTIVTDPPYGIRIGS----------------------KGALEKLYPAFLDEAKRVLR-GRL  136 (171)
T ss_pred             EEEECCHHHC--CCCCCCCEEEEECCCCCCCCCC----------------------HHHHHHHHHHHHHHHHHHCC-CCE
T ss_conf             9997666538--7987883189988982011365----------------------45699999999999998689-978


Q ss_pred             EEEECCHHH
Q ss_conf             999834688
Q gi|254780466|r  102 LWVIGSYHN  110 (375)
Q Consensus       102 i~v~~~~~~  110 (375)
T Consensus       137 ~~i~~~~~~  145 (171)
T pfam01170       137 VFATPEKKD  145 (171)
T ss_pred             EEEEECCHH
T ss_conf             999968689