HHsearch alignment for GI: 254780466 and conserved domain: pfam01555

>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=100.00  E-value=0  Score=349.09  Aligned_cols=208  Identities=45%  Similarity=0.786  Sum_probs=162.6

Q ss_pred             CCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf             11898477876155871333678513001344357789899999889999999986396872999834688899998764
Q gi|254780466|r   40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ  119 (375)
Q Consensus        40 VDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvLK~~Gsi~v~~~~~~i~~i~~~l~  119 (375)
T Consensus         1 IDli~tdPPY~~~~~~~--------------~~~~~~~~~~y~~~~~~~~~~~~rvLk~~G~~~~~~~~~~~~~~~~~~~   66 (221)
T pfam01555         1 VDLIVTDPPYNLGKDYG--------------QWDDKDSYEEYLEWLEEWLKEVRRVLKPGGSIFINIGDKYIKSLKALAL   66 (221)
T ss_pred             CEEEEECCCCCCCCCCC--------------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             91999899997777566--------------2678889999999999999999998268865999767175799999999


Q ss_pred             HC--CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEC-----------CCCCC
Q ss_conf             05--786012468731567777577517654021322100566665023410011237980104-----------65422
Q gi|254780466|r  120 NL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-----------SDWLI  186 (375)
Q Consensus       120 ~~--gf~~~n~IIW~K~n~~pn~~g~r~~~~hE~iiw~~K~~~~k~y~fny~~~k~~n~~~~~~-----------s~w~~  186 (375)
T Consensus        67 ~~~~~~~~~~~iiW~K~~~~~~~~~~~~~~~~E~I~~~~K~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (221)
T pfam01555        67 EILGIFKLLNDIIWRKPNGMPNSNGERFTPAHEYILWFSKTKKY--YTFNYDAIKVPYDEKDKLKKRGSEPNGKPIGDVW  144 (221)
T ss_pred             HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCC--CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             97453422336999716887876678646676689999889866--3680663056632222223014546687776656


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECHHHHHHHHH
Q ss_conf             10258541457787533687781899999998528998889986888517999999809816999728999999999
Q gi|254780466|r  187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK  263 (375)
Q Consensus       187 pi~~g~er~k~~~g~k~HPTqKP~~LleriI~~~S~~gDiVLDPF~GSGTT~~aA~~lgR~~IGiE~~~~Y~~~a~~  263 (375)
T Consensus       145 ~~~~~~~~~~~~~~~~~hpt~kP~~L~~~~I~~~s~~gd~VlDpF~GSGTT~~Aa~~l~R~~iG~E~~~~y~~~a~~  221 (221)
T pfam01555       145 DFPRVQPSEKESGGNGAHPTQKPEALLERLILASTNPGDIVLDPFAGSGTTGAAAKELGRNFIGIEIEEEYVEIAKE  221 (221)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHC
T ss_conf             56544433345666778899895999999999709997999989998279999999829959999589999999619