HHsearch results for GI: 254780466 and protein with PDBid: 1iy9_A
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=94.49 E-value=0.12 Score=28.84 Aligned_cols=92 Identities=13% Similarity=0.238 Sum_probs=56.5
Q ss_pred HHHCCCEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 55327085172599897284147118984778761558713336785130013443577898999998899999999863
Q gi|254780466|r 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96 (375)
Q Consensus 17 ~~~~nkI~~GDcl~~l~~Lpd~sVDlI~tDPPYni~~~~~~~~~~~s~~~~~~d~wd~~~s~~~Y~~f~~~wl~e~~RvL 96 (375)
.+=+-+|+.+|+...++.- +++.|+|+.|+|-..+... + -|+++.++.|++.|
T Consensus 127 ~dprv~i~~~Da~~~l~~~-~~~yDvIi~D~~~p~~~~~---------------------~-----L~t~eFy~~~~~~L 179 (275)
T 1iy9_A 127 DDPRVDVQVDDGFMHIAKS-ENQYDVIMVDSTEPVGPAV---------------------N-----LFTKGFYAGIAKAL 179 (275)
T ss_dssp TSTTEEEEESCSHHHHHTC-CSCEEEEEESCSSCCSCCC---------------------C-----CSTTHHHHHHHHHE
T ss_pred CCCCCEEEECHHHHHHHCC-CCCCCEEEEECCCCCCCCH---------------------H-----HCCHHHHHHHHHHH
T ss_conf 3877438988589987505-6776789993899887212---------------------1-----16899999999874
Q ss_pred CCCCEEEEECC--H---HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 96872999834--6---88899998764057860124687315677775
Q gi|254780466|r 97 KPNGTLWVIGS--Y---HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140 (375)
Q Consensus 97 K~~Gsi~v~~~--~---~~i~~i~~~l~~~gf~~~n~IIW~K~n~~pn~ 140 (375)
+++|.+...+. + .....+...+.++ | .+..+|.-. +|.+
T Consensus 180 ~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~v-F--~~v~~y~~~--iPty 223 (275)
T 1iy9_A 180 KEDGIFVAQTDNPWFTPELITNVQRDVKEI-F--PITKLYTAN--IPTY 223 (275)
T ss_dssp EEEEEEEEECCCTTTCHHHHHHHHHHHHTT-C--SEEEEEEEC--CTTS
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHH-C--CCEEEEEEE--EEEE
T ss_conf 799799985688133467889999999987-8--973899988--4032