HHsearch results for GI: 254780466 and protein with PDBid: 2pjd_A

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=96.90  E-value=0.019  Score=33.67  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=23.4

Q ss_pred             HHHHHHHHHCCCCCEEEEECCHHH-HHHHHHHHHHC
Q ss_conf             999999986396872999834688-89999876405
Q gi|254780466|r   87 AWLLACRRVLKPNGTLWVIGSYHN-IFRIGTMLQNL  121 (375)
Q Consensus        87 ~wl~e~~RvLK~~Gsi~v~~~~~~-i~~i~~~l~~~  121 (375)
                      ..|..+...|+++|.||+.|.-.. +-.+...+++.
T Consensus        93 ~~l~~~~~~l~~g~~i~~~G~~~~gi~s~~k~l~~~  128 (343)
T 2pjd_A           93 FQLMNLLSLLPVGTDIFVVGENRSGVRSAEQMLADY  128 (343)
T ss_dssp             HHHHHHHTTSCTTCEEEEEEEGGGTGGGHHHHHTTT
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             999999974799977999974562678799999875