HHsearch results for GI: 254780466 and protein with PDBid: 3mb5_A
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=96.73 E-value=0.0063 Score=36.62 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCCC--CHHHHHHHHHHCCCCCCEEEECCCCCHHHH-HHHHHHCC--EEEEEEECHHHHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 68778--189999999852899888998688851799-99998098--16999728999999999996305687656302
Q gi|254780466|r 204 HPTQK--PEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRR--SFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278 (375)
Q Consensus 204 HPTqK--P~~LleriI~~~S~~gDiVLDPF~GSGTT~-~aA~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~ 278 (375)
|.||- |...-.-+..+--.+|+.|||--+|||... ..|...+- +-+|+|++++.++.|+++++...-.+...+..
T Consensus 72 r~~qiiyp~d~~~Ii~~l~i~pG~rVLd~G~GsG~lt~~lar~~~~~G~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~ 151 (255)
T 3mb5_A 72 RGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL 151 (255)
T ss_dssp CCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 88746588999999997198989989988866279999999743889779983499999999999999719981499994
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCEEECCCCCEEEEECCCCCEEECCEECCHHHHHHHHCC
Q ss_conf 44433377552346988286587765766898069998159817869865319999987449
Q gi|254780466|r 279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340 (375)
Q Consensus 279 ~~~~~~~~rvpfg~lie~g~l~~g~~L~~~~~~~~a~v~~DG~l~~~~~~gsIh~i~a~~~~ 340 (375)
.+.....+...|.. |.-.+-.|-+.|- ......+++|.|+. ..-+|+|+...++.
T Consensus 152 ~D~~~~~~~~~~D~-V~ld~p~p~~~l~----~~~~~LkpGG~lv~--~~p~~~q~~~~~~~ 206 (255)
T 3mb5_A 152 KDIYEGIEEENVDH-VILDLPQPERVVE----HAAKALKPGGFFVA--YTPCSNQVMRLHEK 206 (255)
T ss_dssp SCGGGCCCCCSEEE-EEECSSCGGGGHH----HHHHHEEEEEEEEE--EESSHHHHHHHHHH
T ss_pred CCHHCCCCCCCCCE-EEEECCCHHHHHH----HHHHHCCCCCEEEE--EECCHHHHHHHHHH
T ss_conf 61103555565657-9996685678999----99985689988999--93998999999999