HHsearch results for GI: 254780466 and protein with PDBid: 3mb5_A

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=96.73  E-value=0.0063  Score=36.62  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=71.3

Q ss_pred             CCCCC--CHHHHHHHHHHCCCCCCEEEECCCCCHHHH-HHHHHHCC--EEEEEEECHHHHHHHHHHHHHCCCCCHHHHCC
Q ss_conf             68778--189999999852899888998688851799-99998098--16999728999999999996305687656302
Q gi|254780466|r  204 HPTQK--PEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRR--SFIGIEMKQDYIDIATKRIASVQPLGNIELTV  278 (375)
Q Consensus       204 HPTqK--P~~LleriI~~~S~~gDiVLDPF~GSGTT~-~aA~~lgR--~~IGiE~~~~Y~~~a~~Rl~~~~~~~~~~~~~  278 (375)
                      |.||-  |...-.-+..+--.+|+.|||--+|||... ..|...+-  +-+|+|++++.++.|+++++...-.+...+..
T Consensus        72 r~~qiiyp~d~~~Ii~~l~i~pG~rVLd~G~GsG~lt~~lar~~~~~G~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~  151 (255)
T 3mb5_A           72 RGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL  151 (255)
T ss_dssp             CCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             88746588999999997198989989988866279999999743889779983499999999999999719981499994


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCCCCEEECCCCCEEEEECCCCCEEECCEECCHHHHHHHHCC
Q ss_conf             44433377552346988286587765766898069998159817869865319999987449
Q gi|254780466|r  279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG  340 (375)
Q Consensus       279 ~~~~~~~~rvpfg~lie~g~l~~g~~L~~~~~~~~a~v~~DG~l~~~~~~gsIh~i~a~~~~  340 (375)
                      .+.....+...|.. |.-.+-.|-+.|-    ......+++|.|+.  ..-+|+|+...++.
T Consensus       152 ~D~~~~~~~~~~D~-V~ld~p~p~~~l~----~~~~~LkpGG~lv~--~~p~~~q~~~~~~~  206 (255)
T 3mb5_A          152 KDIYEGIEEENVDH-VILDLPQPERVVE----HAAKALKPGGFFVA--YTPCSNQVMRLHEK  206 (255)
T ss_dssp             SCGGGCCCCCSEEE-EEECSSCGGGGHH----HHHHHEEEEEEEEE--EESSHHHHHHHHHH
T ss_pred             CCHHCCCCCCCCCE-EEEECCCHHHHHH----HHHHHCCCCCEEEE--EECCHHHHHHHHHH
T ss_conf             61103555565657-9996685678999----99985689988999--93998999999999