BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780466|ref|YP_003064879.1| putative modification
methylase [Candidatus Liberibacter asiaticus str. psy62]
(375 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|197104043|ref|YP_002129420.1| modification methylase [Phenylobacterium zucineum HLK1]
gi|196477463|gb|ACG76991.1| modification methylase [Phenylobacterium zucineum HLK1]
Length = 359
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 268/352 (76%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II+G+ + L+KLP +SVDL+FADPPYNLQL G L RPD+S VDAV D WD+F SFEA
Sbjct: 6 DTIIEGDCLEALKKLPDRSVDLVFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFEA 65
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAFTRAWL CRRVLK +G +WVIGSYHNIFR+G +Q+L FWILNDIVWRKSNPMPNF
Sbjct: 66 YDAFTRAWLKECRRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNF 125
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWAS S + YTFNYDA+K AN+++QMRSDW +P+C+G ERL++ G
Sbjct: 126 KGTRFTNAHETLIWASKSRGGRRYTFNYDAMKMANDELQMRSDWTLPLCTGDERLKDGSG 185
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HPTQKPEALL R++++STKPGD+ILDPFFG+GT+GAVA++L R F+GIE + +Y +
Sbjct: 186 AKAHPTQKPEALLHRVILASTKPGDVILDPFFGTGTTGAVARRLGRKFVGIEREAEYAAL 245
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KRIA V P E+ V KR EPRV F ++E GL++PG +L +G +A V ADG
Sbjct: 246 ARKRIAQVTPATADEMAVTGSKRAEPRVPFGTILEAGLLRPGDVLYCPKGRNAARVRADG 305
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
+L+ G GSIH+VGA V + CNGW +W+F+ L I+ LR VR +L
Sbjct: 306 SLVVGEVSGSIHKVGALVQSAPACNGWTYWHFKSDKGLAPIDVLRAKVRSQL 357
>gi|227821131|ref|YP_002825101.1| modification methylase SmeIP [Sinorhizobium fredii NGR234]
gi|227340130|gb|ACP24348.1| modification methylase SmeIP [Sinorhizobium fredii NGR234]
Length = 376
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 257/372 (69%), Positives = 307/372 (82%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS SLA W D IIKG+ ++ L LP SVD++FADPPYNLQL G L+RP
Sbjct: 1 MSSVVSLAEISRAARPLSWLDSIIKGDCVAALNALPDNSVDVVFADPPYNLQLGGMLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61 DQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
L+FWILNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWILNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PICSG ERL+ DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGGERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R F+GIE +QDYID A +RIA+V+PLG L+V+TGK+ EPRVAFN L+E GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLIESGLIK 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PG +LT+A+ SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE G L
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEAGGTLKP 360
Query: 361 INTLRILVRKEL 372
I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372
>gi|254465616|ref|ZP_05079027.1| modification methylase SmeIP [Rhodobacterales bacterium Y4I]
gi|206686524|gb|EDZ47006.1| modification methylase SmeIP [Rhodobacterales bacterium Y4I]
Length = 367
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 212/355 (59%), Positives = 267/355 (75%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ II G+ I + LPA SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF
Sbjct: 14 LNTIIGGDCIEAMNSLPANSVDLIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFA 73
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR WL A RRVLKPNG++WVIGSYHNIFR+G +LQ+ +W+LND++WRKSNPMPN
Sbjct: 74 AYDQFTREWLKAARRVLKPNGSIWVIGSYHNIFRVGALLQDEGYWVLNDVIWRKSNPMPN 133
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS S A YTFNY+ALKA NE +QMRSDW++PIC+G ER+++++
Sbjct: 134 FRGKRFTNAHETMIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVLPICTGHERIKDEN 192
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL RILV +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 193 GDKAHPTQKPESLLHRILVGATNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRK 252
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI +V+ L V KR PRV F LVERG+++PG+ L + A V AD
Sbjct: 253 VAEKRIKAVRKFDREALEVSASKRAAPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + + +CNGW +W F++ G+ I+ LR +R E+ N
Sbjct: 313 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAEMQN 367
>gi|15964679|ref|NP_385032.1| adenine DNA methyltransferase protein [Sinorhizobium meliloti 1021]
gi|307304257|ref|ZP_07584009.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
BL225C]
gi|307320562|ref|ZP_07599977.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
gi|7387561|sp|O30569|MTS1_RHIME RecName: Full=Modification methylase SmeI; Short=M.SmeI; AltName:
Full=Adenine-specific methyltransferase SmeIP; AltName:
Full=M.CcrMI ortholog; AltName: Full=Modification
methylase SmeIP; Short=M.SmeIP
gi|15073857|emb|CAC45498.1| Adenine DNA methyltransferase [Sinorhizobium meliloti 1021]
gi|306893838|gb|EFN24609.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
gi|306902725|gb|EFN33318.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
BL225C]
Length = 376
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 257/372 (69%), Positives = 308/372 (82%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS SLA W D IIKG+ ++ L LP SVD++FADPPYNLQL G L+RP
Sbjct: 1 MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDHSVDVVFADPPYNLQLGGTLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61 DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
L+FW+LNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWVLNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PICSGSERL+ DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R F+GIE +QDYID A +RIA+V+PLG L+V+TGK+ EPRVAFN LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLVESGLIK 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PG +LT+A+ SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE+ L
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEEGSVLKP 360
Query: 361 INTLRILVRKEL 372
I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372
>gi|150395765|ref|YP_001326232.1| DNA methylase N-4/N-6 domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150027280|gb|ABR59397.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium medicae WSM419]
Length = 398
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 256/372 (68%), Positives = 307/372 (82%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS SLA W D IIKG+ ++ L LP SVD++FADPPYNLQL G L+RP
Sbjct: 23 MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDNSVDVVFADPPYNLQLGGTLHRP 82
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 83 DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 142
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
L+FW+LNDI+WRK+NPMPNF+GRRFQNAHETLIWA+P+ KAKGYTFNY+A+KAAN+DVQM
Sbjct: 143 LHFWVLNDIIWRKTNPMPNFKGRRFQNAHETLIWATPNAKAKGYTFNYEAMKAANDDVQM 202
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PICSGSERL+ DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 203 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 262
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R F+GIE +QDYID A +RIA+V+PLG L+V+TGK+ EPRVAFN L+E GLI+
Sbjct: 263 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLIESGLIK 322
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PG +LT+A+ SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE L
Sbjct: 323 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGSVLKP 382
Query: 361 INTLRILVRKEL 372
I+ LR ++R +L
Sbjct: 383 IDELRSVIRNDL 394
>gi|89070018|ref|ZP_01157349.1| modification methylase [Oceanicola granulosus HTCC2516]
gi|89044355|gb|EAR50493.1| modification methylase [Oceanicola granulosus HTCC2516]
Length = 368
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 205/353 (58%), Positives = 265/353 (75%), Gaps = 1/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I + LP S+DLIFADPPYNLQL G L+RPD+S VDAV D+WD+F++FE
Sbjct: 14 LNTILSGDCIEAMRTLPDASIDLIFADPPYNLQLKGDLHRPDNSRVDAVDDAWDRFATFE 73
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YDAFTRAWL RR+LKP G +WVIGSYHN+FR+G LQN +WILND+VWRKSNPMPN
Sbjct: 74 TYDAFTRAWLAEARRLLKPTGAIWVIGSYHNVFRLGAELQNQGYWILNDVVWRKSNPMPN 133
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWAS S + YTFNY+ALKA NE QMRSDW++PIC+G ERL++ +
Sbjct: 134 FRGKRLTNAHETLIWASKSEGS-KYTFNYEALKALNEGTQMRSDWVLPICTGHERLKDAN 192
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + Y +
Sbjct: 193 GDKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYRE 252
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A R+ ++ L V T KR EPRV F LVERG+++PG++LT+ G SA V AD
Sbjct: 253 VAEARLKRIRKYDRDALAVTTSKRAEPRVPFGQLVERGMLRPGEVLTSLNGQKSAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTL++ GSIH+VGA + G+ +CNGW +W F + G+ I+ LR +R E+
Sbjct: 313 GTLVADDVKGSIHQVGAHLEGAPSCNGWTYWCFRRDGKTVPIDLLRQQIRAEM 365
>gi|254476528|ref|ZP_05089914.1| modification methylase SmeIP [Ruegeria sp. R11]
gi|214030771|gb|EEB71606.1| modification methylase SmeIP [Ruegeria sp. R11]
Length = 374
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 213/355 (60%), Positives = 264/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LP+ SVD+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF
Sbjct: 21 LNAILDGDCIEVMAGLPSNSVDMIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFG 80
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL RR+LKPNG++WVIGSYHNIFR+GT +Q+ FWILND++WRKSNPMPN
Sbjct: 81 VYDKFTRDWLKEARRILKPNGSIWVIGSYHNIFRVGTAMQDEGFWILNDVIWRKSNPMPN 140
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS S A YTFNY+ALKA NE +QMRSDW++PIC+G ERL++
Sbjct: 141 FRGKRFTNAHETMIWASKSEGA-KYTFNYEALKALNEGLQMRSDWVLPICTGHERLKDDA 199
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE+LL RIL+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE + Y +
Sbjct: 200 GNKAHPTQKPESLLHRILLGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREATYRE 259
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI SV+ L V KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 260 VAEKRIKSVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 319
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + + +CNGW +W F++ G+ I+ LR +R EL N
Sbjct: 320 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELQN 374
>gi|260432296|ref|ZP_05786267.1| modification methylase CcrMI [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416124|gb|EEX09383.1| modification methylase CcrMI [Silicibacter lacuscaerulensis
ITI-1157]
Length = 367
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 213/355 (60%), Positives = 267/355 (75%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LP SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF
Sbjct: 14 LNTILSGDCIEVMNSLPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFA 73
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTRAWL A R+LKPNG +WVIGSYHNIFR+G+ LQ+ +WILND++WRKSNPMPN
Sbjct: 74 AYDKFTRAWLKAAHRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVIWRKSNPMPN 133
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS A YTFNY+ALKA NE VQMRSDW++PIC+G ERL++++
Sbjct: 134 FRGKRFTNAHETMIWASKREGA-KYTFNYEALKALNEGVQMRSDWVLPICTGHERLKDEN 192
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 193 GDKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRK 252
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRIA V+ L V KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 253 VAEKRIAKVRKFDRDALEVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTL+ GSIH+VGA + + +CNGW +W F++ G+ I+ LR +R EL+N
Sbjct: 313 GTLVGDNIKGSIHQVGAHLENAPSCNGWTYWCFKREGKTVPIDVLRQQIRAELHN 367
>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040143|gb|ACT56939.1| putative modification methylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 375
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 375/375 (100%), Positives = 375/375 (100%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP
Sbjct: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN
Sbjct: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV
Sbjct: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ
Sbjct: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS
Sbjct: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
Query: 361 INTLRILVRKELYNC 375
INTLRILVRKELYNC
Sbjct: 361 INTLRILVRKELYNC 375
>gi|310817213|ref|YP_003965177.1| modification methylase [Ketogulonicigenium vulgare Y25]
gi|308755948|gb|ADO43877.1| modification methylase [Ketogulonicigenium vulgare Y25]
Length = 367
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 216/353 (61%), Positives = 272/353 (77%), Gaps = 1/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D II G+ I + LP S+DLIFADPPYNLQL G+L+RPD+S VDAV D WD+F SF
Sbjct: 14 LDSIIAGDCIDAMRALPDASIDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFDSFA 73
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYDAF+RAWL RR+LKPNG +WVIGSYHNIFR+G LQN +W+LND++WRKSNPMPN
Sbjct: 74 AYDAFSRAWLAEARRLLKPNGAIWVIGSYHNIFRLGAELQNQGYWLLNDVIWRKSNPMPN 133
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWA+ S AK TFNY+ALKA NE VQMRSDW++PIC+G ERL+ D
Sbjct: 134 FRGKRLTNAHETLIWAAKSENAKP-TFNYEALKALNEGVQMRSDWVLPICTGHERLKGDD 192
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 193 GAKAHPTQKPESLLHRVLIGTTNPGDVVLDPFFGTGTTGAVAKMLGRHFIGIEREESYRK 252
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+AT+R+A V+PL L V T KR EPRVAF LLVERG+++PG+ L + G SA V AD
Sbjct: 253 VATRRLAKVRPLSAEALAVTTSKRAEPRVAFGLLVERGMLRPGEELQSLNGRHSAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTL++ GSIH+VGA++ G+ +CNGW +W+F++ G+ I+ LR +R E+
Sbjct: 313 GTLVATDHTGSIHQVGARLEGAPSCNGWTYWHFKRDGQNVPIDALRQQIRDEM 365
>gi|222147821|ref|YP_002548778.1| cell cycle regulated site-specific DNA-methyltransferase protein
[Agrobacterium vitis S4]
gi|221734809|gb|ACM35772.1| cell cycle regulated site-specific DNA-methyltransferase protein
[Agrobacterium vitis S4]
Length = 377
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 254/372 (68%), Positives = 311/372 (83%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
M+ LA N F W + IIKG+ ++ LE LP +SVD IFADPPYNLQL G L+RP
Sbjct: 1 MASVFPLADLRRSNDPFAWMNSIIKGDCVAALEALPDQSVDAIFADPPYNLQLGGMLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D S+VDAV D+WD+F+SFEAYDAFTRAWLLACRRVLKP+GT+WVIGSYHNIFR+G LQ+
Sbjct: 61 DQSVVDAVDDAWDQFASFEAYDAFTRAWLLACRRVLKPHGTIWVIGSYHNIFRVGATLQD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
LNFWILNDIVWRK+NPMPNF+GRRFQNAHET+IWAS KAK YTFNYDALKA+N+DVQM
Sbjct: 121 LNFWILNDIVWRKTNPMPNFKGRRFQNAHETMIWASRDAKAKSYTFNYDALKASNDDVQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PICSG ERL+ +DG+K+HPTQKPEALL+R++++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGGERLKGEDGKKIHPTQKPEALLARVILASTKPGDVVLDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R+F+GIE +QDYID A+ RI +V+ LG +ELTVLTGK++EPRVAFN L++ GL+Q
Sbjct: 241 AKRLGRNFVGIEREQDYIDAASARIDAVEALGKVELTVLTGKKSEPRVAFNTLLDSGLLQ 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PGQ+L+ + SA + ADGTL+SGT+ GSIHRVGAKV G + CNGW FW++E G+L
Sbjct: 301 PGQVLSCEKRRHSAIIRADGTLVSGTQAGSIHRVGAKVRGLDACNGWTFWHYEDAGKLKP 360
Query: 361 INTLRILVRKEL 372
I+ LR LVR +
Sbjct: 361 IDDLRSLVRASM 372
>gi|254512453|ref|ZP_05124520.1| modification methylase SmeIP [Rhodobacteraceae bacterium KLH11]
gi|221536164|gb|EEE39152.1| modification methylase SmeIP [Rhodobacteraceae bacterium KLH11]
Length = 367
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 213/355 (60%), Positives = 266/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I + LP SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF
Sbjct: 14 LNTILSGDCIEAMNSLPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFG 73
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTRAWL A R+LKPNG +WVIGSYHNIFR+G+ LQ+ +WILND+VWRKSNPMPN
Sbjct: 74 AYDQFTRAWLKAAHRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVVWRKSNPMPN 133
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS A YTFNY+ALKA NE VQMRSDW++PIC+G ERL++++
Sbjct: 134 FRGKRFTNAHETMIWASKREGA-KYTFNYEALKALNEGVQMRSDWVLPICTGHERLKDEN 192
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 193 GDKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRK 252
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRIA V+ L V KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 253 VAEKRIAKVRKFDREALEVSASKRAEPRVPFGQLVERGMLRPGEELYSMNKRHKAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTL+ GSIH+VGA + + +CNGW +W F++ G+ I+ LR +R EL+N
Sbjct: 313 GTLVGDNVKGSIHQVGAHLENAPSCNGWTYWCFKREGKTVPIDVLRQQIRAELHN 367
>gi|146276124|ref|YP_001166283.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145554365|gb|ABP68978.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 372
Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats.
Identities = 207/354 (58%), Positives = 265/354 (74%), Gaps = 1/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I+ G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF
Sbjct: 15 LNQILAGDCIEVMRSLPECSVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFSSFA 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G LQ+ FWILND+VWRKSNPMPN
Sbjct: 75 SYDQFTREWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G+R NAHETLIWAS + YTFNY+ALKA NE +QMRSDW+IPIC+G ERL+++
Sbjct: 135 FKGKRLTNAHETLIWASKQEAS-KYTFNYEALKALNEGIQMRSDWVIPICTGHERLKDEH 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPEALL R++V++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 194 GDKAHPTQKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEGYRK 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A +R++ V+ L V KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 254 VAAERLSRVRRFDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTLI GSIH+VGA + G+ +CNGW +W +++ G++ I+ LR +R E+
Sbjct: 314 GTLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREGKMIPIDILRQQIRAEME 367
>gi|83855283|ref|ZP_00948813.1| modification methylase [Sulfitobacter sp. NAS-14.1]
gi|83941806|ref|ZP_00954268.1| modification methylase [Sulfitobacter sp. EE-36]
gi|83843126|gb|EAP82293.1| modification methylase [Sulfitobacter sp. NAS-14.1]
gi|83847626|gb|EAP85501.1| modification methylase [Sulfitobacter sp. EE-36]
Length = 366
Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats.
Identities = 214/355 (60%), Positives = 264/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ II G+ I + LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+FSSF
Sbjct: 13 LNTIISGDCIEAMNALPAESVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDAWDQFSSFA 72
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G LQ+ FWILND+VWRKSNPMPN
Sbjct: 73 VYDKFTREWLKAARRLLKPNGAIWVIGSYHNIFRVGAALQDAGFWILNDVVWRKSNPMPN 132
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWA + YTFNY+ALKA NE +QMRSDW++PIC+G ERL+++
Sbjct: 133 FRGKRFTNAHETMIWAGKDENS-KYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDEM 191
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 192 GDKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRK 251
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI SV+ L T KR EPRV F LVERG+++PG+ L + G SA V AD
Sbjct: 252 VAEKRIKSVRKFDKEALQTTTSKRAEPRVPFGQLVERGMLRPGEELYSLNGRYSAKVRAD 311
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTL+ GSIH+VGA + +CNGW +W ++K G+ I+ LR +R E+ N
Sbjct: 312 GTLVGNEVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKRVPIDILRQQIRAEMAN 366
>gi|254461867|ref|ZP_05075283.1| modification methylase SmeIP [Rhodobacterales bacterium HTCC2083]
gi|206678456|gb|EDZ42943.1| modification methylase SmeIP [Rhodobacteraceae bacterium HTCC2083]
Length = 371
Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats.
Identities = 211/355 (59%), Positives = 265/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I G+ I V+ LP S+DLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF
Sbjct: 15 LNTIQSGDCIEVMNSLPENSIDLIFADPPYNLQLKGDLHRPDNSRVDAVDDHWDQFSSFA 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT+ WL A RR+LKPNG +WVIGSYHNIFR+G+ LQN +WILND+VWRKSNPMPN
Sbjct: 75 AYDKFTQDWLKAARRLLKPNGAIWVIGSYHNIFRVGSALQNEGYWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS S A YTFNY+ALK+ NE +QMRSDW++PIC+G ERL+++
Sbjct: 135 FRGKRFTNAHETMIWASKSEGA-KYTFNYEALKSLNEGIQMRSDWVLPICTGHERLKDEA 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GEK HPTQKPE+LL R+L+ ST PGD++LDPFFG+GT+GAVAK L R +IGIE + Y
Sbjct: 194 GEKAHPTQKPESLLHRVLIGSTNPGDVVLDPFFGTGTTGAVAKMLGREYIGIEREAAYRK 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI +V+ L V T KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 254 VAEKRIKAVRKFDREALRVSTSKRAEPRVPFGQLVERGMLRPGENLYSMNNRHKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + G+ +CNGW +W F++ G+ I+ LR +R E+ +
Sbjct: 314 GTLIGDDVKGSIHQVGAALEGAPSCNGWTYWSFKRDGKTVPIDVLRQQIRSEMAD 368
>gi|77462007|ref|YP_351511.1| site-specific DNA-methyltransferase [Rhodobacter sphaeroides 2.4.1]
gi|126460897|ref|YP_001042011.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|221640958|ref|YP_002527220.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
sphaeroides KD131]
gi|332559934|ref|ZP_08414256.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides WS8N]
gi|77386425|gb|ABA77610.1| Site-specific DNA-methyltransferase [Rhodobacter sphaeroides 2.4.1]
gi|126102561|gb|ABN75239.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
17029]
gi|221161739|gb|ACM02719.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
KD131]
gi|332277646|gb|EGJ22961.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides WS8N]
Length = 372
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 208/355 (58%), Positives = 264/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I+ G+ I + LP SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF
Sbjct: 15 LNQILAGDCIETMRSLPECSVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFSSFS 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G LQ+ FWILND+VWRKSNPMPN
Sbjct: 75 VYDQFTREWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G+R NAHETLIWAS + YTFNY+ALKA NE VQMRSDW+IPIC+G ERL+++
Sbjct: 135 FKGKRLTNAHETLIWASKQEAS-KYTFNYEALKALNEGVQMRSDWVIPICTGHERLKDEQ 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPEALL R++V++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 194 GDKAHPTQKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRR 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
IA +R++ V+ L V KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 254 IAAERLSRVRRYDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + G+ +CNGW +W +++ G++ I+ LR +R E+ +
Sbjct: 314 GTLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREGKMIPIDILRQQIRAEMED 368
>gi|99082489|ref|YP_614643.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
gi|99038769|gb|ABF65381.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
Length = 389
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 213/354 (60%), Positives = 264/354 (74%), Gaps = 1/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I + LP+ S+D+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF
Sbjct: 36 LNTILDGDCIERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSKVDAVDDEWDQFSSFG 95
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTRAWL RR+LKPNG LWVIGSYHNIFR+GT LQ+ FWILND+VWRKSNPMPN
Sbjct: 96 VYDQFTRAWLKEARRILKPNGALWVIGSYHNIFRVGTALQDEGFWILNDVVWRKSNPMPN 155
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R+ NAHET+IWAS S A YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +
Sbjct: 156 FRGKRYTNAHETMIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVMPICTGHERLKDAN 214
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 215 GDKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRK 274
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A +RI +V+ L V KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 275 VAEERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 334
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTLI GSIH+VGA + + +CNGW +W F+K G+ I+ LR +R E+
Sbjct: 335 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQ 388
>gi|126738667|ref|ZP_01754372.1| modification methylase [Roseobacter sp. SK209-2-6]
gi|126720466|gb|EBA17172.1| modification methylase [Roseobacter sp. SK209-2-6]
Length = 368
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 211/355 (59%), Positives = 263/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LP SVDLIFADPPYNLQL QL+RPD+S VDAV D WD+FSSF
Sbjct: 15 LNTILDGDCIEVMSGLPDNSVDLIFADPPYNLQLKNQLHRPDNSKVDAVDDHWDQFSSFA 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT WL RR+LKPNG +WVIGSYHNIFR+GT +Q+ FWILND+VWRKSNPMPN
Sbjct: 75 AYDDFTSRWLHQARRILKPNGAIWVIGSYHNIFRVGTAMQDEGFWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R+ NAHET+IWAS S + YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++
Sbjct: 135 FRGKRYTNAHETMIWASKS-EGGKYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDEN 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 194 GDKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEQEESYRK 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A RI +V+ L V T KR PRV F LVERG+++PG+ L + A V AD
Sbjct: 254 VAAARIKAVRKFDREALQVSTSKRAAPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + + +CNGW +W F+K G+ I+ LR +R E+ N
Sbjct: 314 GTLIGDNCKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQN 368
>gi|260574051|ref|ZP_05842056.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
gi|259023517|gb|EEW26808.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
Length = 375
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 205/354 (57%), Positives = 265/354 (74%), Gaps = 1/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I++G+ I+ + LPA S+DLIFADPPYNLQL G L+RPD+SLVDAV D WD+FSSF
Sbjct: 15 LNQILEGDCIAAMNGLPAASIDLIFADPPYNLQLKGDLHRPDNSLVDAVDDHWDQFSSFA 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT WL A RR+LKPNG +WVIGSYHNIFR+G LQ+ FW+LND+VWRKSNPMPN
Sbjct: 75 AYDKFTHDWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWLLNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWAS + YTFNY+ALKA N+ VQMRSDW++PIC+G ERL++
Sbjct: 135 FRGKRLTNAHETLIWASKEEAS-KYTFNYEALKALNDGVQMRSDWVLPICTGHERLKDAA 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL RIL+++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 194 GDKAHPTQKPESLLHRILLATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEIYRQ 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
AT+R++ V+ L KR EPRV F +VERG+++PG+ L + V AD
Sbjct: 254 AATERLSRVRRFDATGLETTGSKRAEPRVPFGQVVERGMLRPGEELFSLGNRFKVKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTLI GSIH+VGA + G+ +CNGW +W+F++ G++ I+ LR +R E+
Sbjct: 314 GTLIGNDVKGSIHQVGAALEGAPSCNGWTYWHFKRDGKMVPIDILRQQIRAEME 367
>gi|86136900|ref|ZP_01055478.1| modification methylase [Roseobacter sp. MED193]
gi|85826224|gb|EAQ46421.1| modification methylase [Roseobacter sp. MED193]
Length = 389
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 214/355 (60%), Positives = 263/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ II G+ I V+ LP +DLIFADPPYNLQL QL+RPD+S VDAV D WD+FSSF
Sbjct: 36 LNTIIDGDCIDVMAGLPDNCIDLIFADPPYNLQLKNQLHRPDNSKVDAVDDHWDQFSSFA 95
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT WL RR+LKPNG +WVIGSYHNIFR+GT +Q+ FWILND+VWRKSNPMPN
Sbjct: 96 AYDDFTSRWLHQARRILKPNGAIWVIGSYHNIFRVGTAMQDEGFWILNDVVWRKSNPMPN 155
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R+ NAHET+IWAS S + YTFNY+ALKA NE +QMRSDW++PIC+G ERL+N+D
Sbjct: 156 FRGKRYTNAHETMIWASKS-EGGKYTFNYEALKALNEGIQMRSDWVLPICTGHERLKNED 214
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GEK HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 215 GEKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEQEESYRK 274
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A +RI SV+ L V T KR EPRV F LVERG+++PG L + A V AD
Sbjct: 275 VAAERIKSVRKFDREALQVSTSKRAEPRVPFGQLVERGMLRPGDELYSMNQRHKAKVRAD 334
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + + +CNGW +W F++ G+ I+ LR +R E+ N
Sbjct: 335 GTLIGDNVKGSIHQVGAHLENAPSCNGWTYWCFKRDGQTVPIDVLRQQIRAEMQN 389
>gi|119384833|ref|YP_915889.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119374600|gb|ABL70193.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
PD1222]
Length = 376
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 208/354 (58%), Positives = 263/354 (74%), Gaps = 1/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I+ G+ I ++ LP SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+FS F
Sbjct: 17 LNQILAGDCIEIMNALPEASVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFSGFA 76
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR WL A RR+LKP+G +WVIGSYHNIFR+G LQN FWILND+VWRK+NPMPN
Sbjct: 77 AYDRFTRDWLAAARRILKPDGAIWVIGSYHNIFRVGAELQNQGFWILNDVVWRKANPMPN 136
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHET+IWAS S A YTFNY+ALK+ NE VQMRSDW++PIC+G ERL++
Sbjct: 137 FRGKRLTNAHETMIWASKSEGA-KYTFNYEALKSLNEGVQMRSDWVLPICTGGERLKDAG 195
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE + Y +
Sbjct: 196 GAKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREAAYRE 255
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRIA ++ + + + KR EPRV F +VERG+++PG+ L + A V AD
Sbjct: 256 VAEKRIARIRKFDSEAIATIKPKRAEPRVPFGQVVERGMLRPGEELYSLNNRHKAKVRAD 315
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
G+LI GSIH+VGA + G+ +CNGW +W+F + G + I+ LR +R E+
Sbjct: 316 GSLIGNDVKGSIHQVGAALEGAPSCNGWTYWHFRREGRMVPIDILRQQIRAEME 369
>gi|83945340|ref|ZP_00957688.1| modification methylase [Oceanicaulis alexandrii HTCC2633]
gi|83851174|gb|EAP89031.1| modification methylase [Oceanicaulis alexandrii HTCC2633]
Length = 364
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 210/353 (59%), Positives = 265/353 (75%), Gaps = 1/353 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I++G+ V++ LP +SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+ F+A
Sbjct: 12 DVILEGDCAEVMKTLPDESVDLIFADPPYNLQLGGDLHRPDNSKVDAVDNDWDQIGDFDA 71
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD F+ AWL RRVLKPNG LW IGSYHNIFR+G LQ++ FWILND++WRKSNPMPNF
Sbjct: 72 YDLFSCAWLEEARRVLKPNGALWTIGSYHNIFRVGAFLQDMGFWILNDVIWRKSNPMPNF 131
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWAS + AK TFNY A+KA N+ VQMRSDW +PIC+G ERL+NKDG
Sbjct: 132 KGTRFTNAHETLIWASKTKDAKP-TFNYAAMKALNDGVQMRSDWTLPICAGGERLKNKDG 190
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K HPTQKPE+LL R+L++++ PGD++LDPFFG+GT+GAVAKKL R +IGIE Y D+
Sbjct: 191 KKAHPTQKPESLLHRVLLATSNPGDVVLDPFFGTGTTGAVAKKLGRHYIGIEADPGYADV 250
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KRIA++ P L V KR PR+ F LVE GL++PG L AQG +A V ADG
Sbjct: 251 ARKRIAAINPTSEDLLQVTQSKRALPRIPFGSLVEAGLLKPGDTLYCAQGRRTAQVRADG 310
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
T+I+G + GSIH++GA V G+ +CNGW FW+ + G L I+ LR +R E+
Sbjct: 311 TVIAGGQAGSIHQMGAHVQGAPSCNGWTFWHVRQGGALAPIDVLRARIRAEMQ 363
>gi|237814961|ref|ZP_04593959.1| Modification methylase HinfI [Brucella abortus str. 2308 A]
gi|237789798|gb|EEP64008.1| Modification methylase HinfI [Brucella abortus str. 2308 A]
Length = 403
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 243/354 (68%), Positives = 299/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45 WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398
>gi|56698274|ref|YP_168647.1| modification methylase [Ruegeria pomeroyi DSS-3]
gi|56680011|gb|AAV96677.1| modification methylase [Ruegeria pomeroyi DSS-3]
Length = 367
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 216/355 (60%), Positives = 269/355 (75%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ +P SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF
Sbjct: 14 LNTIVSGDCIDVMNAMPEASVDLIFADPPYNLQLKGQLHRPDNSQVDAVDDHWDQFSSFA 73
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTRAWL A RR+LKPNG +WVIGSYHNIFR+G+ LQ+ +WILND+VWRKSNPMPN
Sbjct: 74 AYDQFTRAWLKAARRLLKPNGAIWVIGSYHNIFRVGSALQDAGYWILNDVVWRKSNPMPN 133
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS S + YTFNY+ALKA NE VQMRSDW++PIC+G ER+++++
Sbjct: 134 FRGKRFTNAHETMIWASKS-EGGKYTFNYEALKALNEGVQMRSDWVMPICTGHERIKDEN 192
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPEALL R+LVSST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 193 GDKAHPTQKPEALLHRVLVSSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRK 252
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRIA V+ L V KR EPR+ F LVERG+++PG+ L + A V AD
Sbjct: 253 VAEKRIAKVRKFDREALEVSASKRAEPRIPFGQLVERGMLRPGEELYSMNQRHKAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + + +CNGW +W F++ G+ I+ LR +R EL N
Sbjct: 313 GTLIGQNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELEN 367
>gi|218510491|ref|ZP_03508369.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli Brasil 5]
gi|327191944|gb|EGE58926.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli CNPAF512]
Length = 380
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 254/354 (71%), Positives = 305/354 (86%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE LP SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23 WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83 EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RIA+V+PLG ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+ SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ SG E GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376
>gi|163739876|ref|ZP_02147283.1| DNA methylase N-4/N-6 [Phaeobacter gallaeciensis BS107]
gi|163743379|ref|ZP_02150759.1| modification methylase [Phaeobacter gallaeciensis 2.10]
gi|161383373|gb|EDQ07762.1| modification methylase [Phaeobacter gallaeciensis 2.10]
gi|161386910|gb|EDQ11272.1| DNA methylase N-4/N-6 [Phaeobacter gallaeciensis BS107]
Length = 367
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 215/355 (60%), Positives = 263/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LP+ SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF
Sbjct: 14 LNAILDGDCIEVMSGLPSNSVDLIFADPPYNLQLKGQLHRPDNSKVDAVDDHWDQFSSFG 73
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL RR+LKPNG++WVIGSYHNIFR+GT +Q+ FWILND++WRKSNPMPN
Sbjct: 74 VYDKFTRDWLKQARRILKPNGSIWVIGSYHNIFRVGTAVQDEGFWILNDVIWRKSNPMPN 133
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R+ NAHET+IWAS S A YTFNY+ALKA NE +QMRSDW++PIC+G ERL++
Sbjct: 134 FRGKRYTNAHETMIWASKSEGA-KYTFNYEALKALNEGLQMRSDWVMPICTGHERLKDDA 192
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE + Y +
Sbjct: 193 GNKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREAAYRE 252
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI SV+ L V KR EPRV F LVERG+++PG L + A V AD
Sbjct: 253 VAEKRIKSVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGDELYSMNRRHKAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + + +CNGW +W F++ G+ I+ LR +R EL N
Sbjct: 313 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKRDGKTVPIDVLRQQIRAELQN 367
>gi|225626998|ref|ZP_03785037.1| Modification methylase HinfI [Brucella ceti str. Cudo]
gi|225618655|gb|EEH15698.1| Modification methylase HinfI [Brucella ceti str. Cudo]
Length = 403
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 243/354 (68%), Positives = 299/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45 WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398
>gi|259417500|ref|ZP_05741419.1| modification methylase CcrMI [Silicibacter sp. TrichCH4B]
gi|259346406|gb|EEW58220.1| modification methylase CcrMI [Silicibacter sp. TrichCH4B]
Length = 385
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 212/354 (59%), Positives = 264/354 (74%), Gaps = 1/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I + LP+ S+D+IFADPPYNLQL GQL+RPD+S VDAV D WD+FSSF
Sbjct: 32 LNTILDGDCIERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSRVDAVDDEWDQFSSFG 91
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTRAWL RR+LKPNG LWVIGSYHNIFR+G+ LQ+ FWILND+VWRKSNPMPN
Sbjct: 92 VYDQFTRAWLKEARRILKPNGALWVIGSYHNIFRVGSALQDEGFWILNDVVWRKSNPMPN 151
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R+ NAHET+IWAS S A YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +
Sbjct: 152 FRGKRYTNAHETMIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVMPICTGHERLKDAN 210
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPEALL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 211 GDKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREESYRK 270
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A +RI +V+ L V KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 271 VAEERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD 330
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTLI GSIH+VGA + + +CNGW +W F+K G+ I+ LR +R E+
Sbjct: 331 GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQ 384
>gi|83950882|ref|ZP_00959615.1| modification methylase [Roseovarius nubinhibens ISM]
gi|83838781|gb|EAP78077.1| modification methylase [Roseovarius nubinhibens ISM]
Length = 371
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 207/355 (58%), Positives = 262/355 (73%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LP SVDLIFADPPYNLQL G+L+RPD+S VDAV D+WD+FSSF
Sbjct: 15 LNTILSGDCIEVMNSLPEASVDLIFADPPYNLQLKGELHRPDNSQVDAVDDAWDQFSSFA 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT WL A RR+LKPNG +WVIGSYHNIFR+G LQN FWILND+VWRKSNPMPN
Sbjct: 75 AYDKFTTEWLRAARRLLKPNGAIWVIGSYHNIFRVGASLQNEGFWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHET+IWAS + YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++ +
Sbjct: 135 FRGKRLTNAHETMIWASKE-EGGKYTFNYEALKSLNEGIQMRSDWVLPICTGHERLKDAN 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R +IGIE + Y +
Sbjct: 194 GDKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRE 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KR+A V+ L V KR EPRV F L+ERG+++PG+ L + A V AD
Sbjct: 254 VAEKRLAKVRKYDREALQVSQSKRAEPRVPFGQLIERGMLRPGENLYSMNLRHKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + G+ +CNGW +W ++ G+ I+ R +R E+ +
Sbjct: 314 GTLIGDDIKGSIHQVGAALEGAPSCNGWTYWCIKRDGKQVPIDVFRQQIRAEMAD 368
>gi|190890705|ref|YP_001977247.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli CIAT 652]
gi|190695984|gb|ACE90069.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli CIAT 652]
Length = 380
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 254/354 (71%), Positives = 305/354 (86%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE LP SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23 WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83 EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RIA+V+PLG ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+ SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ SG E GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376
>gi|325292178|ref|YP_004278042.1| adenine DNA methyltransferase [Agrobacterium sp. H13-3]
gi|325060031|gb|ADY63722.1| adenine DNA methyltransferase [Agrobacterium sp. H13-3]
Length = 380
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 259/354 (73%), Positives = 307/354 (86%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+FSSF
Sbjct: 24 WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFSSF 83
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G+MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84 EAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGSMLQNLDFWILNDIVWRKTNPMP 143
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWAS PKAKGYTFNY+ALKA+N+DVQMRSDWL PICSG ERL+
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKGYTFNYEALKASNDDVQMRSDWLFPICSGHERLKGD 203
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RIA+V+PLG ELTV+TGKR EPRVAFN LVE GL++PGQ+LT+A+ SA + A
Sbjct: 264 DAASARIAAVEPLGKAELTVMTGKRAEPRVAFNTLVESGLVRPGQVLTDAKRRYSAIIRA 323
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ SG GSIHR+GAKV G + CNGW FW+FE +L I+ LR ++R EL
Sbjct: 324 DGTIASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDQLKPIDDLRTIIRSEL 377
>gi|2305232|gb|AAB71350.1| adenine DNA methyltransferase [Sinorhizobium meliloti]
Length = 376
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 251/372 (67%), Positives = 302/372 (81%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS SLA W D IIKG+ ++ L LP SVD++FADPPYNLQL G L+RP
Sbjct: 1 MSSVVSLAEISRAARPLNWLDSIIKGDCVAALNALPDHSVDVVFADPPYNLQLGGTLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GTLWVIGSYHNIFR+G +LQ+
Sbjct: 61 DQSLVDAVDDDWDQFASFEAYDAFTRAWLLACRRVLKPTGTLWVIGSYHNIFRVGAILQD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
L+FW+LNDI+WRK+ P +GRRFQNAHETLIWA+ + KAKGYTFNY+A+KAAN+DVQM
Sbjct: 121 LHFWVLNDIIWRKTQPDAELQGRRFQNAHETLIWATANAKAKGYTFNYEAMKAANDDVQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PICSGSERL+ DG+K+HPTQKPEALL+RIL++STKPGD++LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGSERLKGDDGKKVHPTQKPEALLARILMASTKPGDVVLDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R F+GIE +QDYID A +RIA+V+PLG L+V+TGK+ EPRVAFN LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAAAERIAAVEPLGKATLSVMTGKKAEPRVAFNTLVESGLIK 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PG +LT+A+ SA V ADGTL SG E GSIHR+GAKV G + CNGW FW+FE+ L
Sbjct: 301 PGTVLTDAKRRYSAIVRADGTLASGGEAGSIHRLGAKVQGLDACNGWTFWHFEEGSVLKP 360
Query: 361 INTLRILVRKEL 372
I+ LR ++R +L
Sbjct: 361 IDELRSVIRNDL 372
>gi|163745411|ref|ZP_02152771.1| modification methylase [Oceanibulbus indolifex HEL-45]
gi|161382229|gb|EDQ06638.1| modification methylase [Oceanibulbus indolifex HEL-45]
Length = 366
Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats.
Identities = 215/355 (60%), Positives = 265/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I + LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+
Sbjct: 13 LNTIVAGDCIEAMNALPAESVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDEWDQFASFK 72
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTRAWL A RR+LKP+G +WVIGSYHNIFR+G LQ+ FWILND+VWRKSNPMPN
Sbjct: 73 AYDDFTRAWLKAARRLLKPDGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPN 132
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWA S + YTFNY+ALKA NE +QMRSDW++PIC+G ERL++
Sbjct: 133 FRGKRFTNAHETMIWAGKSENS-KYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDA 191
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL RILV ST PGD+ILDPFFG+GT+GAVAK L R FIGIE + Y
Sbjct: 192 GDKAHPTQKPESLLHRILVGSTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRK 251
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI+ V+ N L T KR EPRV F LVERG+++PG+ L + G A V AD
Sbjct: 252 VAEKRISMVRKFDNEALQTTTSKRAEPRVPFGQLVERGMLRPGENLYSMNGRHKAKVRAD 311
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + +CNGW +W ++K G+ I+ LR +R E+ N
Sbjct: 312 GTLIGSDVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKNVPIDILRQQIRAEMAN 366
>gi|159042580|ref|YP_001531374.1| adenine-specific methyltransferase [Dinoroseobacter shibae DFL 12]
gi|157910340|gb|ABV91773.1| adenine-specific methyltransferase [Dinoroseobacter shibae DFL 12]
Length = 368
Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats.
Identities = 207/353 (58%), Positives = 270/353 (76%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I+ G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF+
Sbjct: 15 LNEILAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDRFASFD 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+YD F+ WL A RR+LKPNG +WVIGSYHNIFR+G LQN +WILND+VWRKSNPMPN
Sbjct: 75 SYDRFSADWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQNTGYWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWAS S A YTFNY+ALK NE +QMRSDW++PIC+G ERL+++
Sbjct: 135 FRGKRLTNAHETLIWASKSEGA-KYTFNYEALKQLNEGIQMRSDWVLPICTGHERLKDEA 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R++V++T PGD++LDPFFG+GT+GAVAKKL R FIGIE ++ Y
Sbjct: 194 GDKAHPTQKPESLLHRVIVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEAYRK 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A R+A V+ L V KR+EPRV F LVERG+++PG++LT+ G A V AD
Sbjct: 254 VAEARLADVRKYDRESLAVTQSKRSEPRVPFGQLVERGMLRPGEVLTSPGGK-VAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTL++ GSIH+VGA + + +CNGW +W+F++ G+ I+ LR +R E+
Sbjct: 313 GTLVADQVAGSIHQVGAALEHAPSCNGWTYWHFKRDGKSVPIDLLRQQIRAEM 365
>gi|86356641|ref|YP_468533.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli CFN 42]
gi|86280743|gb|ABC89806.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli CFN 42]
Length = 380
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 254/354 (71%), Positives = 305/354 (86%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE LP SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23 WVDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83 EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RIA+V+PLG ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+ SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ SG E GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376
>gi|254485663|ref|ZP_05098868.1| modification methylase SmeIP [Roseobacter sp. GAI101]
gi|214042532|gb|EEB83170.1| modification methylase SmeIP [Roseobacter sp. GAI101]
Length = 366
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 211/355 (59%), Positives = 261/355 (73%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I + +P SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF
Sbjct: 13 LNTILAGDCIEAMNAMPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDQFASFA 72
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL A RR+LKPNG +WVIGSYHNIFR+G LQ+ FWILND+VWRKSNPMPN
Sbjct: 73 VYDKFTREWLKAARRLLKPNGAIWVIGSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPN 132
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWA + YTFNY+ALKA NE +QMRSDW++PIC+G ERL++
Sbjct: 133 FRGKRFTNAHETMIWAGKDENS-KYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDA 191
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL RILV ST PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 192 GDKAHPTQKPESLLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRK 251
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI SV+ L T KR EPRV F LVERG+++PG+ L + G SA V AD
Sbjct: 252 VAEKRIKSVRKFDKEALQTTTSKRAEPRVPFGQLVERGMLRPGEELYSLNGRYSAKVRAD 311
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + +CNGW +W ++K G+ I+ LR +R E+ N
Sbjct: 312 GTLIGNEVKGSIHQVGAAYEKAPSCNGWTYWCYKKDGKRVPIDILRQQIRAEMAN 366
>gi|149912479|ref|ZP_01901013.1| Site-specific DNA-methyltransferase [Roseobacter sp. AzwK-3b]
gi|149812885|gb|EDM72711.1| Site-specific DNA-methyltransferase [Roseobacter sp. AzwK-3b]
Length = 371
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 209/355 (58%), Positives = 264/355 (74%), Gaps = 1/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LP S+DLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SFE
Sbjct: 15 LNTILDGDCIEVMNSLPEGSIDLIFADPPYNLQLRGDLHRPDNSAVDAVDDAWDQFASFE 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT WL A RR+LKPNG +WVIGSYHNIFR+G LQN FWILND+VWRKSNPMPN
Sbjct: 75 VYDCFTNDWLNAARRLLKPNGAIWVIGSYHNIFRVGAALQNAGFWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHET+IWAS A YTFNY+ALK+ N+ VQMRSDW++PIC+G ERL+++
Sbjct: 135 FRGKRLTNAHETMIWASKQEGA-KYTFNYEALKSLNDGVQMRSDWVLPICTGHERLKDEH 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE + Y
Sbjct: 194 GDKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRK 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KR+A ++ L V T KR EPRV F LVERG+++PG+ L + G A V AD
Sbjct: 254 VAEKRLAGIRKFDRAALEVSTSKRAEPRVPFGQLVERGMLRPGEELLSMNGRHKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
GTLI GSIH+VGA + G+ +CNGW +W F++ G+ I+ LR +R E+ +
Sbjct: 314 GTLIGDDVKGSIHQVGAALEGAPSCNGWTYWCFKRDGKTVPIDILRQQIRAEMAD 368
>gi|85705986|ref|ZP_01037082.1| modification methylase [Roseovarius sp. 217]
gi|85669574|gb|EAQ24439.1| modification methylase [Roseovarius sp. 217]
Length = 371
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 208/366 (56%), Positives = 275/366 (75%), Gaps = 1/366 (0%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
+ + +++ + II G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VDA
Sbjct: 3 TMTKAKSAPALPLNTIIAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSQVDA 62
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
V D+WD+F+SF AYD FT WL A RR+LKP+G +WVIGSYHNIFR+G LQ+ +WILN
Sbjct: 63 VDDAWDQFASFAAYDKFTHDWLKAARRLLKPHGAIWVIGSYHNIFRVGAALQDAGYWILN 122
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
D++WRKSNPMPNFRG+R NAHET+IWAS S A YTFNY+ALK+ N+ VQMRSDW++P
Sbjct: 123 DVIWRKSNPMPNFRGKRLTNAHETMIWASKSEGA-KYTFNYEALKSLNDGVQMRSDWVLP 181
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+C+G ERL++ G+K HPTQKPE+LL R+LV ST PGD+ILDPFFG+GT+GAVAK L R
Sbjct: 182 LCTGHERLKDDKGDKAHPTQKPESLLHRVLVGSTNPGDVILDPFFGTGTTGAVAKMLGRD 241
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
+IGIE + Y +A KR+AS++ L V T KR EPRV F L+ERG+++PG++LT+
Sbjct: 242 YIGIEREAAYRVVAEKRLASIRKFDRDALQVSTSKRAEPRVPFGQLIERGMLRPGEMLTS 301
Query: 308 AQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
G +A V ADGTL++ + GSIH+VGA + G+ +CNGW +W F++ G++ I+ LR
Sbjct: 302 MNGKCAAKVRADGTLVADSIKGSIHQVGAHLEGAPSCNGWTYWCFKREGKVVPIDVLRQQ 361
Query: 368 VRKELY 373
+R E+
Sbjct: 362 IRSEME 367
>gi|153007950|ref|YP_001369165.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|223635322|sp|A6WWI2|MTB1_OCHA4 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|151559838|gb|ABS13336.1| DNA methylase N-4/N-6 domain protein [Ochrobactrum anthropi ATCC
49188]
Length = 377
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 238/354 (67%), Positives = 298/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ ++ LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19 WLDSIIKGDCVAALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ+L FW+LND++WRK+NPMP
Sbjct: 79 QAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDLGFWLLNDVIWRKTNPMP 138
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQSYI 258
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 259 DAATARIDAVEPLGKAELTVMTGKRAEPRVAFTSVLEAGLLRPGTVLCDERRRFAAIVRA 318
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GAKV G + CNGW FW++E+ G L I+ LR ++R ++
Sbjct: 319 DGTLAANGEAGSIHRIGAKVQGFDACNGWTFWHYEENGALKPIDALRKVIRDQM 372
>gi|241203450|ref|YP_002974546.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857340|gb|ACS55007.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 379
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 257/354 (72%), Positives = 305/354 (86%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE LP+ SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23 WVDTIIKGDCVSALEALPSHSVDIIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83 EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWASPS KAKGYTFNYDALKAAN+DVQMRSDWL PIC+GSERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPSAKAKGYTFNYDALKAANDDVQMRSDWLFPICNGSERLKGE 202
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKAHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RIA+V+PLG ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+ SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDARRRYSAIVRA 322
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ SG E GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376
>gi|154251158|ref|YP_001411982.1| DNA methylase N-4/N-6 domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154155108|gb|ABS62325.1| DNA methylase N-4/N-6 domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 367
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 209/350 (59%), Positives = 265/350 (75%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
II+G+ I + LP KSVDLIFADPPYNLQL G L RPD S VDAV D WDKF+SF+ YD
Sbjct: 15 IIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGGLTRPDQSKVDAVDDDWDKFASFQVYD 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
FTR W+ A RRVLK G +WVIGSYHNIFR+G LQ+L FW++ND+VWRKSNPMPNFRG
Sbjct: 75 EFTRNWMNAARRVLKDTGAIWVIGSYHNIFRVGATLQDLGFWMMNDVVWRKSNPMPNFRG 134
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
RF NAHETLIWA+ S K YTFNYDA+KA N+D+QMRSDWL+PIC+G ERL++ DG+K
Sbjct: 135 TRFTNAHETLIWATKSADQKKYTFNYDAMKALNDDLQMRSDWLLPICTGGERLKDGDGDK 194
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPEALL R+L+++T GD +LDPFFG+GT+GAVAKKL R+F+GIE ++ YI +A
Sbjct: 195 AHPTQKPEALLHRVLLATTNAGDTVLDPFFGTGTTGAVAKKLGRNFVGIEREERYIKVAR 254
Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
+RI ++ +L V T K+ E R+ F L+ERGL++PG +LT+ +A V ADG++
Sbjct: 255 ERIRLIKTGAPEDLKVTTSKKAEVRIPFGTLIERGLLEPGAVLTDPAKRHAARVRADGSI 314
Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
+ GSIH++GA V G + CNGW FW+F+ G+L I+ LR VR E+
Sbjct: 315 VCRDATGSIHKIGAHVQGLDACNGWTFWHFKTDGKLKPIDILRQKVRAEM 364
>gi|159184467|ref|NP_353817.2| cell cycle regulated site-specific DNA-methyltransferase protein
[Agrobacterium tumefaciens str. C58]
gi|159139778|gb|AAK86602.2| cell cycle regulated site-specific DNA-methyltransferase protein
[Agrobacterium tumefaciens str. C58]
Length = 381
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 255/354 (72%), Positives = 303/354 (85%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 24 WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 83
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84 DAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGAMLQNLDFWILNDIVWRKTNPMP 143
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWAS PKAK YTFNYDALKA+N+DVQMRSDWL PICSG ERL+
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKSYTFNYDALKASNDDVQMRSDWLFPICSGHERLKGD 203
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RI +V+PLG ELTV+TGK+ EPRVAFN LVE GL++PGQ+LT+A+ SA + A
Sbjct: 264 DAASARITAVEPLGKAELTVMTGKKAEPRVAFNTLVESGLVRPGQVLTDARRRYSAIIRA 323
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL SG GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R E+
Sbjct: 324 DGTLASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDALKPIDDLRTIIRSEM 377
>gi|116250848|ref|YP_766686.1| modification methylase [Rhizobium leguminosarum bv. viciae 3841]
gi|115255496|emb|CAK06572.1| putative modification methylase [Rhizobium leguminosarum bv. viciae
3841]
Length = 380
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 257/354 (72%), Positives = 305/354 (86%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE LP+ SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23 WVDTIIKGDCVSALEALPSHSVDIIFADPPYNLQLGGTLHRPDQSLVDAVDDDWDQFASF 82
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83 EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWASPS KAKGYTFNYDALKAAN+DVQMRSDWL PIC+GSERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPSAKAKGYTFNYDALKAANDDVQMRSDWLFPICNGSERLKGE 202
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKAHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RIA+V+PLG ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+ SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDARRRYSAIVRA 322
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ SG E GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376
>gi|255262501|ref|ZP_05341843.1| modification methylase CcrMI [Thalassiobium sp. R2A62]
gi|255104836|gb|EET47510.1| modification methylase CcrMI [Thalassiobium sp. R2A62]
Length = 369
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 210/353 (59%), Positives = 266/353 (75%), Gaps = 1/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I + LPA SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+FSSF+
Sbjct: 15 LNTILDGDCIERMNSLPAGSVDLIFADPPYNLQLRGDLHRPDNSKVDAVDNDWDQFSSFD 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT+AWL A RR+LKPNG +W IGSYHN+FR+G LQN FWILND+VWRKSNPMPN
Sbjct: 75 VYDKFTKAWLKAARRLLKPNGAIWCIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHETLIWAS S A YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +
Sbjct: 135 FRGKRFTNAHETLIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDDN 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+L+++T PGD++LDPFFG+GT+GAVAK L R FIGIE + Y +
Sbjct: 194 GDKAHPTQKPESLLHRVLLATTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREVAYRE 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRIA ++ L V KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 254 VAEKRIAKIRKFDKEALQVSQSKRAEPRVPFGQLVERGMLRPGEELYSINKRHKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTLI GSIH+VGA + G+ +CNGW +W+++K G+ I+ LR +R E+
Sbjct: 314 GTLIGDDVKGSIHQVGAHLEGAPSCNGWTYWHYKKEGKKVPIDLLRQQIRAEM 366
>gi|14091014|gb|AAK53552.1|AF327563_1 cell cycle-regulated methyltransferase CcrM [Agrobacterium
tumefaciens]
Length = 381
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 254/354 (71%), Positives = 302/354 (85%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
WKD IIKG+ ++ L+ LP++SVD IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 24 WKDSIIKGDCVAALDALPSQSVDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 83
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+G MLQNL+FWILNDIVWRK+NPMP
Sbjct: 84 DAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGAMLQNLDFWILNDIVWRKTNPMP 143
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWAS PKAK YTFNYDALKA+N+DVQMRSDWL PICSG ERL+
Sbjct: 144 NFKGRRFQNAHETMIWASRDPKAKSYTFNYDALKASNDDVQMRSDWLFPICSGHERLKGD 203
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 204 DGKKVHPTQKPEALLARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 263
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RI +V+PLG ELTV+TGK+ EPRVAFN LVE G ++PGQ+LT+A+ SA + A
Sbjct: 264 DAASARITAVEPLGKAELTVMTGKKAEPRVAFNTLVESGFVRPGQVLTDARRRYSAIIRA 323
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL SG GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R E+
Sbjct: 324 DGTLASGGTAGSIHRLGAKVQGLDACNGWTFWHFEDGDALKPIDDLRTIIRSEM 377
>gi|239831358|ref|ZP_04679687.1| Modification methylase HinfI [Ochrobactrum intermedium LMG 3301]
gi|239823625|gb|EEQ95193.1| Modification methylase HinfI [Ochrobactrum intermedium LMG 3301]
Length = 443
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 239/354 (67%), Positives = 299/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ ++ LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 85 WLDSIIKGDCVAALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 144
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ+L FW+LNDI+WRK+NPMP
Sbjct: 145 QAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDLGFWLLNDIIWRKTNPMP 204
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 205 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 264
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 265 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQSYI 324
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L++ + +A V A
Sbjct: 325 DAATARIDAVEPLGKAELTVMTGKRAEPRVAFTSVIEAGLLRPGTVLSDERRRFAAIVRA 384
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GAKV G + CNGW FW++E+ G L I+ LR ++R ++
Sbjct: 385 DGTLAANGEAGSIHRMGAKVQGFDACNGWTFWHYEENGTLKPIDALRKVIRDQM 438
>gi|189023721|ref|YP_001934489.1| Adenine-specific methyltransferase [Brucella abortus S19]
gi|260754270|ref|ZP_05866618.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260757489|ref|ZP_05869837.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260761313|ref|ZP_05873656.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260883294|ref|ZP_05894908.1| modification methylase BabI [Brucella abortus bv. 9 str. C68]
gi|261213516|ref|ZP_05927797.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|297247885|ref|ZP_06931603.1| adenine-specific DNA-methyltransferase [Brucella abortus bv. 5 str.
B3196]
gi|223635297|sp|B2S9Y5|MTB1_BRUA1 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|189019293|gb|ACD72015.1| Adenine-specific methyltransferase [Brucella abortus S19]
gi|260667807|gb|EEX54747.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260671745|gb|EEX58566.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260674378|gb|EEX61199.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260872822|gb|EEX79891.1| modification methylase BabI [Brucella abortus bv. 9 str. C68]
gi|260915123|gb|EEX81984.1| DNA methylase N-4/N-6 domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|297175054|gb|EFH34401.1| adenine-specific DNA-methyltransferase [Brucella abortus bv. 5 str.
B3196]
Length = 386
Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 243/354 (68%), Positives = 299/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 28 WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 87
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 88 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 147
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 148 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 207
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 208 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 267
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 268 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 327
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 328 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 381
>gi|62289472|ref|YP_221265.1| modification methylase BabI [Brucella abortus bv. 1 str. 9-941]
gi|82699397|ref|YP_413971.1| cytosine-N4-specific DNA-methyltransferase [Brucella melitensis
biovar Abortus 2308]
gi|254688783|ref|ZP_05152037.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 6
str. 870]
gi|254693266|ref|ZP_05155094.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|254696912|ref|ZP_05158740.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 2
str. 86/8/59]
gi|254729815|ref|ZP_05188393.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 4
str. 292]
gi|256257029|ref|ZP_05462565.1| cytosine-N4-specific DNA-methyltransferase [Brucella abortus bv. 9
str. C68]
gi|260545776|ref|ZP_05821517.1| modification methylase BabI [Brucella abortus NCTC 8038]
gi|88913544|sp|Q2YMK2|MTB1_BRUA2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|90109766|sp|P0C116|MTB1_BRUAB RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|2305234|gb|AAB71351.1| adenine DNA methyltransferase [Brucella abortus]
gi|62195604|gb|AAX73904.1| BabI, modification methylase BabI [Brucella abortus bv. 1 str.
9-941]
gi|82615498|emb|CAJ10472.1| SAM (and some other nucleotide) binding motif:Site-specific
DNA-methyltransferase (cytosine-N4-specific):N-6
Adenine-specific [Brucella melitensis biovar Abortus
2308]
gi|260097183|gb|EEW81058.1| modification methylase BabI [Brucella abortus NCTC 8038]
Length = 377
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 243/354 (68%), Positives = 299/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19 WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASREQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372
>gi|209548255|ref|YP_002280172.1| DNA methylase N-4/N-6 [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534011|gb|ACI53946.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 380
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 253/354 (71%), Positives = 305/354 (86%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE LP SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23 WVDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83 EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RIA+V+PLG ELTV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+ SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRA 322
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ SG + GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R +L
Sbjct: 323 DGTVASGGDAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376
>gi|294675758|ref|YP_003576373.1| adenine-specific DNA-methyltransferase [Rhodobacter capsulatus SB
1003]
gi|294474578|gb|ADE83966.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodobacter
capsulatus SB 1003]
Length = 367
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 206/354 (58%), Positives = 265/354 (74%), Gaps = 1/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I+ G+ I V+ +LP SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F SF+
Sbjct: 15 LNEILAGDCIDVMNRLPEASVDLIFADPPYNLQLRGDLHRPDNSKVDAVDDAWDQFGSFD 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL A +R+LKPNG +WVIGSYHN+FR+G LQN FWILND+VWRKSNPMPN
Sbjct: 75 HYDTFTRDWLAAAKRILKPNGAIWVIGSYHNVFRLGAELQNQGFWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWAS S A YTFNY+ALKA NE +QMRSDW++PIC+G+ERL++
Sbjct: 135 FRGKRLTNAHETLIWASKSEGA-KYTFNYEALKALNEGIQMRSDWVLPICTGNERLKDDA 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL RI++ +T GD++LDPFFG+GT+GAVAK L R FIGIE ++ Y +
Sbjct: 194 GDKAHPTQKPESLLHRIILGTTNAGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREEAYRE 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A KRI V+ L + KR EPRV F LVERG+++PG+ L + A V AD
Sbjct: 254 AARKRIDKVRKFDREALEITGSKRAEPRVPFGQLVERGMLRPGEELYSIGNRFKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTL+ GSIH+VGA + G+ +CNGW +W+F++ G++ I+ LR +R E+
Sbjct: 314 GTLVGNDVKGSIHQVGAHLEGAPSCNGWTYWHFKRDGKMVPIDLLRQQIRAEMN 367
>gi|148560742|ref|YP_001258505.1| modification methylase BabI [Brucella ovis ATCC 25840]
gi|223635317|sp|A5VP58|MTB1_BRUO2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|148371999|gb|ABQ61978.1| modification methylase BabI [Brucella ovis ATCC 25840]
Length = 386
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 243/354 (68%), Positives = 299/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 28 WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 87
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 88 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 147
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 148 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 207
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 208 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 267
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 268 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 327
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 328 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 381
>gi|17987727|ref|NP_540361.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|81851486|sp|Q8YFS6|MTB1_BRUME RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|17983446|gb|AAL52625.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
16M]
Length = 403
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 242/354 (68%), Positives = 298/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+L SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 45 WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 104
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 105 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 164
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 165 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 224
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 225 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 284
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 285 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 344
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 345 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 398
>gi|167648322|ref|YP_001685985.1| DNA methylase N-4/N-6 domain-containing protein [Caulobacter sp.
K31]
gi|167350752|gb|ABZ73487.1| DNA methylase N-4/N-6 domain protein [Caulobacter sp. K31]
Length = 358
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 262/352 (74%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G+ I + LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7 TIIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTR WL A RRVLK +G +WVIGSYHNIFR+G +Q+L FWILND++WRKSNPMPNF+
Sbjct: 67 DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDVIWRKSNPMPNFK 126
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETLIWAS S AK YTFNYDALK AN++VQMRSDW +P+C+G ER++ DG
Sbjct: 127 GTRFANAHETLIWASKSQGAKRYTFNYDALKMANDEVQMRSDWTLPLCTGEERIKGADGN 186
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R F+GIE + DYI+ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRRFVGIERESDYIEHA 246
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
RIA V P+ +L V+ KR+EPRV F +VE GL+ PG L A+G+ +A V ADG+
Sbjct: 247 KARIAKVVPIAPGDLDVMGSKRSEPRVPFGNIVEAGLLNPGDTLYCAKGSHAAKVRADGS 306
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
+ G GSIH+VGA V + CNGW +W+F+ L I+ LR VR +
Sbjct: 307 ITVGDLSGSIHKVGALVQSAPACNGWTYWHFKTDKGLAPIDVLRSQVRAGMN 358
>gi|23501392|ref|NP_697519.1| modification methylase BabI [Brucella suis 1330]
gi|161618464|ref|YP_001592351.1| modification methylase HinfI [Brucella canis ATCC 23365]
gi|163842773|ref|YP_001627177.1| modification methylase HinfI [Brucella suis ATCC 23445]
gi|254701294|ref|ZP_05163122.1| modification methylase HinfI [Brucella suis bv. 5 str. 513]
gi|254703839|ref|ZP_05165667.1| modification methylase HinfI [Brucella suis bv. 3 str. 686]
gi|254707782|ref|ZP_05169610.1| modification methylase HinfI [Brucella pinnipedialis M163/99/10]
gi|254709634|ref|ZP_05171445.1| modification methylase HinfI [Brucella pinnipedialis B2/94]
gi|254712950|ref|ZP_05174761.1| modification methylase HinfI [Brucella ceti M644/93/1]
gi|254716696|ref|ZP_05178507.1| modification methylase HinfI [Brucella ceti M13/05/1]
gi|254718664|ref|ZP_05180475.1| modification methylase HinfI [Brucella sp. 83/13]
gi|256031127|ref|ZP_05444741.1| modification methylase HinfI [Brucella pinnipedialis M292/94/1]
gi|256159203|ref|ZP_05457014.1| modification methylase HinfI [Brucella ceti M490/95/1]
gi|256254530|ref|ZP_05460066.1| modification methylase HinfI [Brucella ceti B1/94]
gi|256368944|ref|YP_003106450.1| modification methylase BabI [Brucella microti CCM 4915]
gi|260168258|ref|ZP_05755069.1| modification methylase BabI [Brucella sp. F5/99]
gi|260566907|ref|ZP_05837377.1| modification methylase BabI [Brucella suis bv. 4 str. 40]
gi|261218502|ref|ZP_05932783.1| modification methylase BabI [Brucella ceti M13/05/1]
gi|261221708|ref|ZP_05935989.1| modification methylase BabI [Brucella ceti B1/94]
gi|261315268|ref|ZP_05954465.1| modification methylase BabI [Brucella pinnipedialis M163/99/10]
gi|261317167|ref|ZP_05956364.1| modification methylase BabI [Brucella pinnipedialis B2/94]
gi|261320648|ref|ZP_05959845.1| modification methylase BabI [Brucella ceti M644/93/1]
gi|261751836|ref|ZP_05995545.1| modification methylase BabI [Brucella suis bv. 5 str. 513]
gi|261754491|ref|ZP_05998200.1| modification methylase BabI [Brucella suis bv. 3 str. 686]
gi|261757722|ref|ZP_06001431.1| modification methylase BabI [Brucella sp. F5/99]
gi|265983646|ref|ZP_06096381.1| modification methylase BabI [Brucella sp. 83/13]
gi|265988205|ref|ZP_06100762.1| modification methylase BabI [Brucella pinnipedialis M292/94/1]
gi|265997671|ref|ZP_06110228.1| modification methylase BabI [Brucella ceti M490/95/1]
gi|294851866|ref|ZP_06792539.1| modification methylase BabI [Brucella sp. NVSL 07-0026]
gi|306837787|ref|ZP_07470651.1| modification methylase BabI [Brucella sp. NF 2653]
gi|306845119|ref|ZP_07477699.1| modification methylase BabI [Brucella sp. BO1]
gi|81847171|sp|Q8G242|MTB1_BRUSU RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|223635299|sp|B0CKH7|MTB1_BRUSI RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|223635316|sp|A9M916|MTB1_BRUC2 RecName: Full=Modification methylase BabI; Short=M.BabI; AltName:
Full=Adenine-specific methyltransferase BabI; AltName:
Full=DNA methyltransferase CcrM; AltName: Full=M.CcrMI
ortholog
gi|23347288|gb|AAN29434.1| modification methylase BabI [Brucella suis 1330]
gi|161335275|gb|ABX61580.1| Modification methylase HinfI [Brucella canis ATCC 23365]
gi|163673496|gb|ABY37607.1| Modification methylase HinfI [Brucella suis ATCC 23445]
gi|255999102|gb|ACU47501.1| modification methylase BabI [Brucella microti CCM 4915]
gi|260156425|gb|EEW91505.1| modification methylase BabI [Brucella suis bv. 4 str. 40]
gi|260920292|gb|EEX86945.1| modification methylase BabI [Brucella ceti B1/94]
gi|260923591|gb|EEX90159.1| modification methylase BabI [Brucella ceti M13/05/1]
gi|261293338|gb|EEX96834.1| modification methylase BabI [Brucella ceti M644/93/1]
gi|261296390|gb|EEX99886.1| modification methylase BabI [Brucella pinnipedialis B2/94]
gi|261304294|gb|EEY07791.1| modification methylase BabI [Brucella pinnipedialis M163/99/10]
gi|261737706|gb|EEY25702.1| modification methylase BabI [Brucella sp. F5/99]
gi|261741589|gb|EEY29515.1| modification methylase BabI [Brucella suis bv. 5 str. 513]
gi|261744244|gb|EEY32170.1| modification methylase BabI [Brucella suis bv. 3 str. 686]
gi|262552139|gb|EEZ08129.1| modification methylase BabI [Brucella ceti M490/95/1]
gi|264660402|gb|EEZ30663.1| modification methylase BabI [Brucella pinnipedialis M292/94/1]
gi|264662238|gb|EEZ32499.1| modification methylase BabI [Brucella sp. 83/13]
gi|294820455|gb|EFG37454.1| modification methylase BabI [Brucella sp. NVSL 07-0026]
gi|306274534|gb|EFM56329.1| modification methylase BabI [Brucella sp. BO1]
gi|306407128|gb|EFM63343.1| modification methylase BabI [Brucella sp. NF 2653]
Length = 377
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 243/354 (68%), Positives = 299/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19 WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372
>gi|149202923|ref|ZP_01879894.1| modification methylase [Roseovarius sp. TM1035]
gi|149143469|gb|EDM31505.1| modification methylase [Roseovarius sp. TM1035]
Length = 370
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 205/354 (57%), Positives = 271/354 (76%), Gaps = 2/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ II G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F+SF
Sbjct: 15 LNTIIAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSQVDAVDDAWDQFASFA 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT+ WL A RR+LKP+G +WVIGSYHNIFR+G LQ+ +WILND++WRKSNPMPN
Sbjct: 75 AYDKFTQDWLKAARRLLKPHGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHET+IWAS S A YTFNY+ALK+ N+ VQMRSDW++P+C+G ERL++ +
Sbjct: 135 FRGKRLTNAHETMIWASKSEGA-KYTFNYEALKSLNDGVQMRSDWVLPLCTGHERLKDDN 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE + Y
Sbjct: 194 GDKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAAYRS 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KR+A+++ L V T KR EPRV F L+ERG+++PG++LT+ G +A V AD
Sbjct: 254 VAEKRLANIRKFDRDALQVSTSKRAEPRVPFGQLIERGMLRPGEVLTSINGK-AAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTL++ GSIH++GA + G+ +CNGW +W F++ G++ I+ LR +R E+
Sbjct: 313 GTLVADGINGSIHQIGAHLEGAPSCNGWTYWCFKREGKVVPIDVLRQQIRSEME 366
>gi|114707681|ref|ZP_01440576.1| adenine DNA methyltransferase [Fulvimarina pelagi HTCC2506]
gi|114536925|gb|EAU40054.1| adenine DNA methyltransferase [Fulvimarina pelagi HTCC2506]
Length = 378
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 232/356 (65%), Positives = 291/356 (81%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+W+++I++G+ ++ +E+LPA+SVD+IFADPPYNLQL G L RPDHS VDAV D+WD+F
Sbjct: 17 IDWRNQILQGHCVTEMERLPAESVDVIFADPPYNLQLGGDLMRPDHSKVDAVDDAWDQFE 76
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
SF+AYDAFTRAWLLA RRVLKPNGTLWVIGSYHNIFR+G LQ+L +WILNDIVWRK+NP
Sbjct: 77 SFQAYDAFTRAWLLAARRVLKPNGTLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKTNP 136
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
MPNFRG+RFQNAHETLIWAS KAK YTFNY+ALKA+N+DVQMRSDWL PICSG ERL+
Sbjct: 137 MPNFRGKRFQNAHETLIWASRDAKAKSYTFNYEALKASNDDVQMRSDWLFPICSGGERLK 196
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N+DG K HPTQKPEALL+RIL++STKPGD++LDPFFG+GT+GAVAK+L R F+GIE +++
Sbjct: 197 NEDGAKAHPTQKPEALLARILLASTKPGDVVLDPFFGTGTTGAVAKRLGRDFVGIEREEE 256
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
Y+ IA +RIA V+PL + +L + GKR EPRV F LVE GL+ PG LT+++ A V
Sbjct: 257 YVKIAQQRIADVEPLDDDDLKMAAGKRAEPRVPFASLVEAGLVTPGTELTDSKRRYRARV 316
Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
ADGT+ G + SIHR+GA+V G + CNGW FW+ ++ L I+ LR L R+ +
Sbjct: 317 RADGTIAVGDDAASIHRIGARVQGLDACNGWTFWHVKEGKNLTPIDELRQLARQRM 372
>gi|126734212|ref|ZP_01749959.1| modification methylase [Roseobacter sp. CCS2]
gi|126717078|gb|EBA13942.1| modification methylase [Roseobacter sp. CCS2]
Length = 369
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 214/353 (60%), Positives = 268/353 (75%), Gaps = 1/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LPA SVDLIFADPPYNLQL G L+RPD+S VDAV D+WD+F SF+
Sbjct: 15 LNTIVDGDCIDVMNSLPAGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDQFDSFK 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL A RR+LKPNG +WVIGSYHN+FR+G LQN FWILND+VWRKSNPMPN
Sbjct: 75 VYDKFTREWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWAS + YTFNY+ALKA NE VQMRSDW++PIC+G ERL+N+
Sbjct: 135 FRGKRLTNAHETLIWASKEEAS-KYTFNYEALKALNEGVQMRSDWVLPICTGHERLKNEA 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKP++LL R+LV++T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 194 GDKAHPTQKPQSLLHRVLVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRK 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI + + N L V T KR EPRVAF +LVERG+++PG+ L + G A V AD
Sbjct: 254 VAEKRIKNTRKFDNEALQVSTSKRAEPRVAFGVLVERGMLRPGEELWSMNGRHKAKVRAD 313
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTLI GSIH+VGA + G+ +CNGW +W F++ G+ I+ LR +R E+
Sbjct: 314 GTLIGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRSEM 366
>gi|83594540|ref|YP_428292.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
gi|83577454|gb|ABC24005.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
Length = 367
Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats.
Identities = 202/359 (56%), Positives = 268/359 (74%), Gaps = 5/359 (1%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I +G+SI V+ LP+ S+D+IFADPPYN+ L G+L RPD+S VD V D WD+F S A
Sbjct: 8 NRIYQGDSIEVMRSLPSASIDMIFADPPYNMMLGGELLRPDNSRVDGVDDEWDRFESQRA 67
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y FTR+WL RR+LK NGT+WVIGSYHNI+R+G LQ+L FW LND+VWRK+NPMPNF
Sbjct: 68 YAEFTRSWLREARRLLKDNGTIWVIGSYHNIYRVGAELQDLGFWTLNDVVWRKANPMPNF 127
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETL+W + S +A YTFNY+A+K+ NE +QMRSDW +P+C+G ERL+ +DG
Sbjct: 128 KGTRFTNAHETLLWCAKSAEA-RYTFNYEAMKSLNEGLQMRSDWTLPLCNGKERLKAEDG 186
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K+HPTQKPE+LL R+++SST PGDIILDPFFG+GT+GAVAK L R +IG+E + YI
Sbjct: 187 KKVHPTQKPESLLYRVILSSTHPGDIILDPFFGTGTTGAVAKLLGRQWIGLERDEAYIAA 246
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A +RIA V+P+ ++ L + K++EPR+ F +VERGL+ PG +L ++Q +A V ADG
Sbjct: 247 ARQRIAQVEPIKDLRLLITPSKKSEPRIPFGTVVERGLLAPGSLLCDSQRRWTAKVRADG 306
Query: 321 TLI----SGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYNC 375
TL+ G GSIH+VGA V G+ CNGW FW+ ++ G I+ LR VR EL C
Sbjct: 307 TLVATSSHGDHRGSIHQVGAAVQGAPACNGWTFWHIDRPGGAVPIDVLRQQVRAELEAC 365
>gi|16124633|ref|NP_419197.1| modification methylase CcrMI [Caulobacter crescentus CB15]
gi|221233321|ref|YP_002515757.1| adenine-specific methyltransferase ccrM [Caulobacter crescentus
NA1000]
gi|239977504|sp|B8GZ33|MTC1_CAUCN RecName: Full=Modification methylase CcrMI; Short=M.CcrMI; AltName:
Full=Adenine-specific methyltransferase CcrMI
gi|239977505|sp|P0CAW2|MTC1_CAUCR RecName: Full=Modification methylase CcrMI; Short=M.CcrMI; AltName:
Full=Adenine-specific methyltransferase CcrMI
gi|13421535|gb|AAK22365.1| modification methylase CcrMI [Caulobacter crescentus CB15]
gi|220962493|gb|ACL93849.1| adenine-specific methyltransferase ccrM [Caulobacter crescentus
NA1000]
Length = 358
Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats.
Identities = 213/352 (60%), Positives = 258/352 (73%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G+ I + LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7 TIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTR WL A RRVLK +G +WVIGSYHNIFR+G +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67 DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETLIWAS S AK YTFNYDALK AN++VQMRSDW IP+C+G ER++ DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +Y++ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLEHA 246
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
RIA V P+ +L V+ KR EPRV F +VE GL+ PG L ++G A V DG+
Sbjct: 247 KARIAKVVPIAPEDLDVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDGS 306
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
+ G GSIH++GA V + CNGW +W+F+ L I+ LR VR +
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358
>gi|163733085|ref|ZP_02140529.1| modification methylase [Roseobacter litoralis Och 149]
gi|161393620|gb|EDQ17945.1| modification methylase [Roseobacter litoralis Och 149]
Length = 366
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 212/368 (57%), Positives = 273/368 (74%), Gaps = 2/368 (0%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ + + +++ + II G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VD
Sbjct: 1 MMMTKTKSAAALPLNTIIDGDCIEVMNGLPEASVDLIFADPPYNLQLKGDLHRPDNSRVD 60
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
AV D WD+F+SF+ YD FT+AWL A RR+LKP+G +WVIGSYHNIFR+G LQN +WIL
Sbjct: 61 AVDDEWDQFASFKVYDDFTKAWLKAARRILKPDGAIWVIGSYHNIFRVGAELQNQGYWIL 120
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
ND+VWRKSNPMPNFRG+RF NAHET+IWA ++ YTFNY+ALKA NE +QMRSDW++
Sbjct: 121 NDVVWRKSNPMPNFRGKRFTNAHETMIWAGR-DESSKYTFNYEALKALNEGIQMRSDWVL 179
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
PIC+G ERL++++G+K HPTQKPE+LL R+LV +T PGD+ILDPFFG+GT+GAVAK L R
Sbjct: 180 PICTGHERLKDENGDKAHPTQKPESLLHRVLVGATNPGDVILDPFFGTGTTGAVAKMLGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
FIGIE + Y +A KRIA V+ L V KR EPRV F LVERG+++PG+ L
Sbjct: 240 DFIGIEREAAYRKVAEKRIAKVRKFDREALQVSVSKRAEPRVPFGQLVERGMLRPGEALY 299
Query: 307 NAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
+ +G A V ADGTLI GSIH+VGA + G+ +CNGW +W F++ G+ I+ LR
Sbjct: 300 SPRGQ-VAKVRADGTLIGNDVKGSIHQVGAHLEGAPSCNGWTYWTFKQDGKKVPIDVLRQ 358
Query: 367 LVRKELYN 374
+R E+ N
Sbjct: 359 QIRSEMTN 366
>gi|329888142|ref|ZP_08266740.1| modification methylase CcrMI [Brevundimonas diminuta ATCC 11568]
gi|328846698|gb|EGF96260.1| modification methylase CcrMI [Brevundimonas diminuta ATCC 11568]
Length = 356
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 209/353 (59%), Positives = 262/353 (74%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I++G+ I VL+ LP KSVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF A
Sbjct: 4 DVILRGDCIEVLKGLPDKSVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFAA 63
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAFTRAWL CRRVLK G+LWVIGSYHNIFR+G +Q+L FW+LNDI+WRKSNPMPNF
Sbjct: 64 YDAFTRAWLGECRRVLKDEGSLWVIGSYHNIFRLGAAMQDLGFWVLNDIIWRKSNPMPNF 123
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW + +C+G ERL++++G
Sbjct: 124 KGTRFTNAHETLIWAAKSREQKRYTFNYDALKAFNEDTQMRSDWTLALCTGGERLKDENG 183
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K HPTQKPEALL R+L+S+++ GD++LDPFFG+GT+GA AK+L R FIGIE + Y +
Sbjct: 184 DKAHPTQKPEALLHRVLLSASRVGDVVLDPFFGTGTTGAAAKRLGRRFIGIERDETYAKL 243
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KRI +V P +L V K+ EP+V F LVE GL+ PG L +G A V ADG
Sbjct: 244 AEKRIKAVIPAAPEDLVVTGSKKAEPKVPFGALVEAGLLAPGDKLYCPKGEREARVRADG 303
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
+L+SG GSIH++GA + + CNGW +W F+ L I+ LR +R +
Sbjct: 304 SLVSGALTGSIHKLGALLENAPACNGWTYWRFKTDTGLRPIDALRAEIRAGMQ 356
>gi|260460279|ref|ZP_05808531.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
WSM2075]
gi|259033924|gb|EEW35183.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 377
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 239/373 (64%), Positives = 296/373 (79%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS L EW D I+KG+ ++ L++LP KS+D+IFADPPYNLQL+G L+RP
Sbjct: 1 MSAVRLLDELSLAPQQSEWLDTILKGDCVAALDRLPEKSIDVIFADPPYNLQLDGDLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D S VDAV D WD+F SFEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G +Q+
Sbjct: 61 DQSKVDAVDDDWDRFESFEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
L FWILND+VWRK+NPMPNFRGRRFQNAHET+IWAS K KGYTFNY+ALKA+N+D+QM
Sbjct: 121 LGFWILNDVVWRKTNPMPNFRGRRFQNAHETMIWASRDQKGKGYTFNYEALKASNDDIQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PIC+G ERL+N +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICTGGERLKNDNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R F+GIE +Q YID A +RI +V+PL + +LTVLTGKR EPRVAF L++ GL+
Sbjct: 241 AKRLGRHFVGIEREQAYIDAANERIDAVRPLEDADLTVLTGKRAEPRVAFVSLIDTGLMV 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PG L +A+ +A V ADGT+ G GSIH++GA+V G + CNGW FW++E+ G L
Sbjct: 301 PGATLYDAKKRWAAKVRADGTVAIGDSAGSIHKIGAEVQGLDACNGWTFWHYERSGGLTP 360
Query: 361 INTLRILVRKELY 373
I+ LR + R +
Sbjct: 361 IDELRRIARLGME 373
>gi|222085157|ref|YP_002543687.1| cell cycle regulated site-specific DNA-methyltransferase protein
[Agrobacterium radiobacter K84]
gi|221722605|gb|ACM25761.1| cell cycle regulated site-specific DNA-methyltransferase protein
[Agrobacterium radiobacter K84]
Length = 376
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 254/372 (68%), Positives = 307/372 (82%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
M+ LA + W D IIKG+ ++ LE LP SVD+IFADPPYNLQL G L+RP
Sbjct: 1 MASVFPLADLRTSATPGSWVDTIIKGDCVAALEALPTHSVDVIFADPPYNLQLGGTLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP GT+WVIGSYHNIFR+G +Q+
Sbjct: 61 DQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGTIWVIGSYHNIFRVGATMQD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
LNFWILNDIVWRK+NPMPNF+GRRFQNAHET+IWASP+ K KGYTFNYDA+KAAN+DVQM
Sbjct: 121 LNFWILNDIVWRKTNPMPNFKGRRFQNAHETMIWASPNAKTKGYTFNYDAMKAANDDVQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PIC+G ERL+ DG+K+HPTQKPEALL+R++++S+KPGDIILDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICNGGERLKGDDGKKVHPTQKPEALLARVIMASSKPGDIILDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R F+GIE +QDYID A+ RIASV+PLG ELTV+TGK+ E RVAFN+LVE GLI+
Sbjct: 241 AKRLGRHFVGIEREQDYIDAASARIASVEPLGKAELTVMTGKKAEARVAFNVLVESGLIK 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PGQ+LT+A+ SA V ADGT+ +G E GSIHR+GAKV G + CNGW FW+F+ L
Sbjct: 301 PGQVLTDARRRHSAIVRADGTVAAGGEAGSIHRLGAKVQGLDACNGWTFWHFDDGQSLRP 360
Query: 361 INTLRILVRKEL 372
I+ LR ++R ++
Sbjct: 361 IDELRAIIRNDM 372
>gi|84515025|ref|ZP_01002388.1| modification methylase [Loktanella vestfoldensis SKA53]
gi|84511184|gb|EAQ07638.1| modification methylase [Loktanella vestfoldensis SKA53]
Length = 385
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 212/354 (59%), Positives = 268/354 (75%), Gaps = 1/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ II G+ I+V+ LPA SVDLIFADPPYNLQL G L+RP++S VDAV D+WD+F SF
Sbjct: 31 LNTIIDGDCIAVMNSLPAGSVDLIFADPPYNLQLKGDLHRPNNSKVDAVDDAWDQFDSFA 90
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT+AWL A RR+LKPNG +WVIGSYHN+FR+G LQN FWILND+VWRKSNPMPN
Sbjct: 91 AYDRFTKAWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPN 150
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWAS + YTFNY+ALK+ NE VQMRSDW++PIC+G ERL++
Sbjct: 151 FRGKRLTNAHETLIWASKEEAS-KYTFNYEALKSLNEGVQMRSDWVLPICTGHERLKDDQ 209
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKP++LL R++V +T PGD+ILDPFFG+GT+GAVAK L R FIGIE + Y
Sbjct: 210 GDKAHPTQKPQSLLHRVIVGTTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRK 269
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRIA+ + L V + KR+EPRVAF +LVERG+++PG+ L + G A V AD
Sbjct: 270 VAEKRIANTRKFDTEALEVSSSKRSEPRVAFGVLVERGMLRPGEELWSMNGRHKAKVRAD 329
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTLI GSIH+VGA + G+ +CNGW +W F++ G+ I+ LR +R E+
Sbjct: 330 GTLIGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRSEME 383
>gi|256060624|ref|ZP_05450790.1| modification methylase BabI [Brucella neotomae 5K33]
gi|261324621|ref|ZP_05963818.1| modification methylase BabI [Brucella neotomae 5K33]
gi|261300601|gb|EEY04098.1| modification methylase BabI [Brucella neotomae 5K33]
Length = 377
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 243/354 (68%), Positives = 299/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+LP SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19 WLDSIIKGDCVSALERLPDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGIVLCDERRRFAAIVRA 318
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372
>gi|319784679|ref|YP_004144155.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170567|gb|ADV14105.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 377
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 238/373 (63%), Positives = 296/373 (79%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS L + EW D I+KG+ ++ L++LP KS+D+IFADPPYNLQL+G L+RP
Sbjct: 1 MSAVRLLDELSHAPQQSEWLDTILKGDCVAALDRLPEKSIDVIFADPPYNLQLDGDLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D S VDAV D WD+F SFEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G +Q+
Sbjct: 61 DQSKVDAVDDDWDQFESFEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
L FWILND+VWRK+NPMPNFRGRRFQNAHET+IWA+ K KGYTFNY+A+KA+N+D+QM
Sbjct: 121 LGFWILNDVVWRKTNPMPNFRGRRFQNAHETMIWATRDQKGKGYTFNYEAMKASNDDIQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PIC+G ERL+N +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICTGGERLKNDNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R F+GIE +Q YID A +RI +V+PL +LTVLTGKR EPRVAF L++ GL+
Sbjct: 241 AKRLGRHFVGIEREQAYIDAANERIDAVRPLDGADLTVLTGKRAEPRVAFVSLIDTGLMM 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PG L +A+ +A V ADGT+ G GSIH+VGA+V G + CNGW FW++E+ G L
Sbjct: 301 PGATLYDAKKRWAAKVRADGTVAIGDSAGSIHKVGAEVQGLDACNGWTFWHYERSGGLTP 360
Query: 361 INTLRILVRKELY 373
I+ LR + R +
Sbjct: 361 IDELRRIARLGME 373
>gi|114764187|ref|ZP_01443425.1| modification methylase [Pelagibaca bermudensis HTCC2601]
gi|114543339|gb|EAU46355.1| modification methylase [Roseovarius sp. HTCC2601]
Length = 367
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 210/352 (59%), Positives = 268/352 (76%), Gaps = 2/352 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ G+ I ++ LPA+SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SFE
Sbjct: 13 NTILAGDCIEMMNSLPAESVDLIFADPPYNLQLRGDLHRPDNSRVDAVDDHWDQFASFEV 72
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD FTR WL A +R+LKPNG +WVIGSYHNIFR+G LQ+ +WILND++WRKSNPMPNF
Sbjct: 73 YDRFTREWLAAAKRLLKPNGAIWVIGSYHNIFRVGAALQDAGYWILNDVIWRKSNPMPNF 132
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RG+RF NAHET+IWAS A YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 133 RGKRFTNAHETMIWASKGEGA-KYTFNYEALKALNEGIQMRSDWVLPICNGGERLKDANG 191
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K HPTQKP +LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE + Y ++
Sbjct: 192 DKAHPTQKPASLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 251
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A +RIA V+ L V KR EPRV F LVERGL++PG++L +A G A V ADG
Sbjct: 252 AERRIADVRAYDRSSLEVTRAKRAEPRVPFGQLVERGLLRPGEMLVSANGK-VAKVRADG 310
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
TL+ GSIH+VGA + G+ +CNGW +W+F K G++ I+ LR +R E+
Sbjct: 311 TLVGDDVKGSIHQVGAHLEGAPSCNGWTYWHFRKDGKVVPIDVLRQQIRAEM 362
>gi|218682477|ref|ZP_03530078.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli CIAT 894]
Length = 380
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 251/354 (70%), Positives = 302/354 (85%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE LP SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+S
Sbjct: 23 WVDTIIKGDCVSALEALPNHSVDVIFADPPYNLQLGGSLHRPDQSLVDAVDDEWDQFASL 82
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G LQ+LNFWILNDI+WRK+NPMP
Sbjct: 83 EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMP 142
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+DVQMRSDWL PIC+G+ERL+ +
Sbjct: 143 NFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLKGE 202
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+GAVAK+L R F+GIE +QDYI
Sbjct: 203 DGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYI 262
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A+ RIA+V+PLG ELTV+TGK+ E RVAFN+LVE GLI+ GQ+LT+ + SA V A
Sbjct: 263 DAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVESGLIKAGQVLTDVRRRYSAIVRA 322
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ SG E GSIHR+GAKV G + CNGW FW+FE L I+ LR ++R +L
Sbjct: 323 DGTVASGGEAGSIHRLGAKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 376
>gi|110677702|ref|YP_680709.1| modification methylase [Roseobacter denitrificans OCh 114]
gi|109453818|gb|ABG30023.1| modification methylase [Roseobacter denitrificans OCh 114]
Length = 364
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 213/353 (60%), Positives = 267/353 (75%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ II G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+FSSF+
Sbjct: 12 LNTIIDGDCIEVMNGLPEASVDLIFADPPYNLQLKGDLHRPDNSRVDAVDDEWDQFSSFK 71
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT+AWL A RR+LKP+G +WVIGSYHNIFR+G LQN +WILND+VWRKSNPMPN
Sbjct: 72 AYDNFTKAWLKAARRILKPDGAIWVIGSYHNIFRVGAELQNQGYWILNDVVWRKSNPMPN 131
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWA ++ YTFNY+ALKA NE +QMRSDW++PIC+G ERL++++
Sbjct: 132 FRGKRFTNAHETMIWAGR-DESSKYTFNYEALKALNEGIQMRSDWVLPICTGHERLKDEN 190
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+LV +T PGD+ILDPFFG+GT+GAVAK L R FIGIE + Y
Sbjct: 191 GDKAHPTQKPESLLHRVLVGATNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREAAYRK 250
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRIA V+ L V KR EPRV F LVERG+++PG+ L + +G A V AD
Sbjct: 251 VAEKRIAKVRKFDREALQVSVSKRAEPRVPFGQLVERGMLRPGEALYSPRGQ-VAKVRAD 309
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTLI GSIH+VGA + G+ +CNGW +W F++ G+ I+ LR +R E+
Sbjct: 310 GTLIGNDVKGSIHQVGAHLEGAPSCNGWTYWTFKQDGKKIPIDVLRQQIRSEM 362
>gi|254436719|ref|ZP_05050213.1| DNA methylase domain protein [Octadecabacter antarcticus 307]
gi|198252165|gb|EDY76479.1| DNA methylase domain protein [Octadecabacter antarcticus 307]
Length = 373
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 204/353 (57%), Positives = 262/353 (74%), Gaps = 1/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+F+SF+
Sbjct: 19 LNTILDGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDNDWDQFASFK 78
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT AWL A RR+LK +G +WVIGSYHN+FR+GT LQN FWILND+VWRKSNPMPN
Sbjct: 79 VYDDFTHAWLKAARRILKKDGAIWVIGSYHNVFRMGTELQNQGFWILNDVVWRKSNPMPN 138
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWAS S +K TFNY+ALKA NE +QMRSDW++PIC+G ERL+N
Sbjct: 139 FRGKRLTNAHETLIWASKSETSKP-TFNYEALKALNEGIQMRSDWVLPICTGHERLKNDQ 197
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + +Y
Sbjct: 198 GDKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAEYRA 257
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A +R+A ++ + L V KR EPRV F +VERG+++PG+ L + G A V AD
Sbjct: 258 VAARRLAKIRKFDSEALEVTQSKRAEPRVPFGQVVERGMLRPGEELWSMNGRHKAKVRAD 317
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTLI GSIH+VGA + +CNGW +W+F + G+ I+ LR +R E+
Sbjct: 318 GTLIGADAKGSIHQVGAACENAPSCNGWTYWHFRRDGKKVPIDLLRQQIRSEM 370
>gi|254417828|ref|ZP_05031552.1| DNA methylase domain protein [Brevundimonas sp. BAL3]
gi|196184005|gb|EDX78981.1| DNA methylase domain protein [Brevundimonas sp. BAL3]
Length = 369
Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats.
Identities = 211/354 (59%), Positives = 263/354 (74%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KD I +G+ I+VL+ LP SVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF
Sbjct: 16 KDVIHRGDCIAVLKSLPDASVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFA 75
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTRAWL CRRVLKP G++WVIGSYHN+FR+G +Q+L FW+LNDI+WRKSNPMPN
Sbjct: 76 EYDTFTRAWLTECRRVLKPEGSIWVIGSYHNVFRLGAAIQDLGFWVLNDIIWRKSNPMPN 135
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW +C+G ER+++ D
Sbjct: 136 FKGTRFTNAHETLIWAARSREQKRYTFNYDALKAFNEDTQMRSDWTFALCTGEERIKDAD 195
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPEALL R+L+S+T+PGD++LDPFFG+GT+GA AK+L R +IGIE + Y +
Sbjct: 196 GKKAHPTQKPEALLHRVLLSATRPGDVVLDPFFGTGTTGAAAKRLGRHYIGIERDETYAE 255
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A RIASV P +L V+ KR EP+V F LVE GL+ PG L +G A V AD
Sbjct: 256 VAETRIASVIPANPEDLMVMGSKRAEPKVPFGALVEAGLLHPGDRLYCPKGEREARVRAD 315
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
G+L+SG+ GSIH++GA + CNGW +W F+ L SI+ LR VR +
Sbjct: 316 GSLVSGSLTGSIHKLGALFENAPACNGWTYWRFKTDQGLKSIDALRAEVRAGMQ 369
>gi|225852027|ref|YP_002732260.1| modification methylase HinfI [Brucella melitensis ATCC 23457]
gi|256044204|ref|ZP_05447111.1| adenine-specific methyltransferase [Brucella melitensis bv. 1 str.
Rev.1]
gi|256113019|ref|ZP_05453916.1| adenine-specific methyltransferase [Brucella melitensis bv. 3 str.
Ether]
gi|256264469|ref|ZP_05467001.1| modification methylase BabI [Brucella melitensis bv. 2 str. 63/9]
gi|260563563|ref|ZP_05834049.1| modification methylase BabI [Brucella melitensis bv. 1 str. 16M]
gi|265990620|ref|ZP_06103177.1| modification methylase BabI [Brucella melitensis bv. 1 str. Rev.1]
gi|265994452|ref|ZP_06107009.1| modification methylase BabI [Brucella melitensis bv. 3 str. Ether]
gi|225640392|gb|ACO00306.1| Modification methylase HinfI [Brucella melitensis ATCC 23457]
gi|260153579|gb|EEW88671.1| modification methylase BabI [Brucella melitensis bv. 1 str. 16M]
gi|262765565|gb|EEZ11354.1| modification methylase BabI [Brucella melitensis bv. 3 str. Ether]
gi|263001404|gb|EEZ13979.1| modification methylase BabI [Brucella melitensis bv. 1 str. Rev.1]
gi|263094800|gb|EEZ18538.1| modification methylase BabI [Brucella melitensis bv. 2 str. 63/9]
Length = 377
Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats.
Identities = 242/354 (68%), Positives = 298/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+L SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 19 WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 78
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 79 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 138
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 139 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 198
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 199 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 258
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 259 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 318
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 319 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 372
>gi|254450082|ref|ZP_05063519.1| modification methylase [Octadecabacter antarcticus 238]
gi|198264488|gb|EDY88758.1| modification methylase [Octadecabacter antarcticus 238]
Length = 373
Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats.
Identities = 207/353 (58%), Positives = 263/353 (74%), Gaps = 1/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ II G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VDAV + WD+F SF+
Sbjct: 19 LNSIIDGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDNDWDQFESFK 78
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT AWL A RR+LKP+G +WVIGSYHN+FR+GT LQN FWILND+VWRKSNPMPN
Sbjct: 79 VYDDFTHAWLKAARRILKPDGAIWVIGSYHNVFRMGTELQNQGFWILNDVVWRKSNPMPN 138
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWAS + K+K TFNY+ALKA NE +QMRSDW++PIC+G ERL+N
Sbjct: 139 FRGKRLTNAHETLIWASKAEKSKP-TFNYEALKALNEGIQMRSDWVLPICTGHERLKNDQ 197
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+L+ +T PGD++LDPFFG+GT+GAVAK L R +IGIE + +Y
Sbjct: 198 GDKAHPTQKPESLLHRVLLGTTNPGDVVLDPFFGTGTTGAVAKMLGRDYIGIEREAEYRA 257
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KR+A ++ + L V KR EPRV F +VERG+++PG+ L + G A V AD
Sbjct: 258 VAEKRLAKIRKFDSEALEVTQSKRAEPRVPFGQVVERGMLRPGEELWSMNGRHKAKVRAD 317
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTLI GSIH+VGA + +CNGW +W+F + G+ I+ LR +R E+
Sbjct: 318 GTLIGADAKGSIHQVGAACEKAPSCNGWTYWHFRRDGKTVPIDLLRQQIRSEM 370
>gi|84687972|ref|ZP_01015836.1| modification methylase [Maritimibacter alkaliphilus HTCC2654]
gi|84664004|gb|EAQ10504.1| modification methylase [Rhodobacterales bacterium HTCC2654]
Length = 364
Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 218/353 (61%), Positives = 270/353 (76%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I+ G+ I V+ LP SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F+SF+
Sbjct: 13 LNQILPGDCIEVMNSLPEGSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDEWDQFASFK 72
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL A RR+LKPNG +WVIGSYHN+FR+G LQN FWILND+VWRKSNPMPN
Sbjct: 73 VYDDFTREWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPN 132
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+R NAHETLIWA S +K TFNY+ALK+ NE VQMRSDW+IPIC+G ERL++ +
Sbjct: 133 FRGKRLTNAHETLIWAQKSEDSKA-TFNYEALKSLNEGVQMRSDWVIPICNGGERLKDDN 191
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GEK HPTQKPEALL R+LV +T PGD++LDPFFG+GT+GAVAK L R FIGIE ++ Y
Sbjct: 192 GEKAHPTQKPEALLHRVLVGTTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRK 251
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KRI+ ++ LTV T KR EPRVAF LVERG+++PG+ L +G I A V AD
Sbjct: 252 VAEKRISKIRKFDKEALTVSTSKRAEPRVAFGQLVERGMLRPGETLIGPRGQI-AKVRAD 310
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTLISG GSIH+VGA + + +CNGW +W F++ G+ SI+ LR +R E+
Sbjct: 311 GTLISGEARGSIHQVGAALESAPSCNGWTYWAFKRDGKTVSIDVLRQQIRAEM 363
>gi|126728137|ref|ZP_01743953.1| modification methylase [Sagittula stellata E-37]
gi|126711102|gb|EBA10152.1| modification methylase [Sagittula stellata E-37]
Length = 365
Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 208/352 (59%), Positives = 272/352 (77%), Gaps = 2/352 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ G+ I V+ LP SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+FS+F A
Sbjct: 16 NQILDGDCIQVMNSLPEASVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFSNFAA 75
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAFT+ WL A RR+LKP+G +WVIGSYHNIFR+G LQ+ FWILND++WRK+NPMPNF
Sbjct: 76 YDAFTQDWLRAARRLLKPDGAIWVIGSYHNIFRVGAALQDAGFWILNDVIWRKANPMPNF 135
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RG+RF NAHET+IWAS S A YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++ +G
Sbjct: 136 RGKRFTNAHETMIWASKSEGA-KYTFNYEALKSLNEGIQMRSDWVLPICNGGERLKDANG 194
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K HPTQKP++LL R++V ST PGD++LDPFFG+GT+GAVAK L R +IGIE + Y ++
Sbjct: 195 DKAHPTQKPQSLLHRVIVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYREV 254
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KR+ V+ L V T KR EPRV F LVERG+++PG++L N +G + A V ADG
Sbjct: 255 ALKRLGDVRAFDKGALEVSTSKRAEPRVPFGQLVERGMLRPGEMLINGRGQM-AKVRADG 313
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
TL+ GSIH+VGAK+ G+ +CNGW +W+F + G+ I+ LR +R E+
Sbjct: 314 TLVGDGVTGSIHQVGAKLEGAPSCNGWTYWHFRRDGKTVPIDVLRQQIRSEM 365
>gi|118590772|ref|ZP_01548173.1| adenine dna methyltransferase protein [Stappia aggregata IAM 12614]
gi|118436748|gb|EAV43388.1| adenine dna methyltransferase protein [Stappia aggregata IAM 12614]
Length = 379
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 219/355 (61%), Positives = 274/355 (77%), Gaps = 1/355 (0%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W + I+KG+ ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA D WD+F SF
Sbjct: 25 WLNTILKGDCVAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSKVDACDDHWDQFESF 84
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLA RRV+K +G+L+VIGSYHNIFR+G +LQ+L FWI+NDIVW KSNPMP
Sbjct: 85 EAYDAFTRAWLLAVRRVMKADGSLYVIGSYHNIFRVGAILQDLGFWIMNDIVWLKSNPMP 144
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHET+IWA S AK TFNYDALK NED+QMRSDW +P+C+G+ERL+ K
Sbjct: 145 NFRGKRFTNAHETMIWAVKSKDAKP-TFNYDALKTFNEDLQMRSDWHLPLCTGAERLKGK 203
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL R+L +S+KPGD++LDPFFG+GT+GAVAKKL R ++G+E +QDYI
Sbjct: 204 DGQKVHPTQKPEALLYRVLTASSKPGDVVLDPFFGTGTTGAVAKKLGRHYVGVEREQDYI 263
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +++P L + GKR R+ F L+E GL+QPG L+ +G A V A
Sbjct: 264 DAATARIEAIEPGDAASLEMQQGKRALKRIPFGTLLESGLLQPGTELSCPKGKHLAIVRA 323
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
DG+L SG GSIH+VGA V G E CNGW FW+ + G+ I+ LR +R L
Sbjct: 324 DGSLKSGDHTGSIHKVGALVQGQEACNGWTFWHINEGGKTSPIDDLRKEIRSRLQ 378
>gi|254471927|ref|ZP_05085328.1| modification methylase SmeIP [Pseudovibrio sp. JE062]
gi|211959129|gb|EEA94328.1| modification methylase SmeIP [Pseudovibrio sp. JE062]
Length = 365
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 215/355 (60%), Positives = 273/355 (76%), Gaps = 1/355 (0%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
EW D IIKG+ + L KLP SVD++FADPPYNLQL G L+RPDHS VDA D WD+FSS
Sbjct: 10 EWLDTIIKGDCVEALNKLPDNSVDVVFADPPYNLQLGGDLHRPDHSKVDACDDHWDQFSS 69
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F+AYD FTRAWL A RRVLKPNG++WVIGSYHNIFR+G ++Q+L FWI ND+VW K+NPM
Sbjct: 70 FKAYDEFTRAWLTAVRRVLKPNGSIWVIGSYHNIFRVGAVMQDLGFWINNDVVWLKTNPM 129
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PNFRG+RF NAHETLIWA PS ++K TFNYDA+K N+D+QMRSDW++PIC+G ERL++
Sbjct: 130 PNFRGKRFTNAHETLIWACPSQESKP-TFNYDAMKTFNDDLQMRSDWVLPICTGHERLKD 188
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+G+K+HPTQKPE+LL R+L+S++ GD+ILDPFFG+GT+GAVAKKL R F+G E + Y
Sbjct: 189 DNGDKVHPTQKPESLLYRVLLSTSNQGDVILDPFFGTGTTGAVAKKLGRHFVGCEREDAY 248
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
I A++RI V P + L + GKR PRV F L+E GL+ PG LT+A+G ATV
Sbjct: 249 IKAASERIDRVTPANDDFLAMTQGKRALPRVPFGNLLETGLLTPGAELTDARGRFKATVR 308
Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
ADG+LI G GSIH+VGA V G + CNGW FW+ ++ L ++ LR +VR ++
Sbjct: 309 ADGSLICGEHSGSIHKVGALVQGQQACNGWTFWHVKRGKALEPVDALRQVVRSQM 363
>gi|326408521|gb|ADZ65586.1| modification methylase HinfI [Brucella melitensis M28]
gi|326538238|gb|ADZ86453.1| modification methylase HinfI [Brucella melitensis M5-90]
Length = 368
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 242/354 (68%), Positives = 298/354 (84%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE+L SVD+IFADPPYNLQL G L+RPD S+V AV D WD+F SF
Sbjct: 10 WLDSIIKGDCVSALERLSDHSVDVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESF 69
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMP
Sbjct: 70 QAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMP 129
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHETLIWAS K KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL+++
Sbjct: 130 NFRGRRFQNAHETLIWASRDQKGKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDE 189
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K+HPTQKPEALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YI
Sbjct: 190 NGDKVHPTQKPEALLARIMMASSKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYI 249
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RI +V+PLG ELTV+TGKR EPRVAF ++E GL++PG +L + + +A V A
Sbjct: 250 DAATARINAVEPLGKAELTVMTGKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRA 309
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL + E GSIHR+GA+V G + CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 310 DGTLTANGEAGSIHRIGARVQGFDACNGWTFWHFEENGVLKPIDALRKIIREQM 363
>gi|328544989|ref|YP_004305098.1| adenine dna methyltransferase protein [polymorphum gilvum
SL003B-26A1]
gi|326414731|gb|ADZ71794.1| Adenine dna methyltransferase protein [Polymorphum gilvum
SL003B-26A1]
Length = 379
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 221/354 (62%), Positives = 280/354 (79%), Gaps = 1/354 (0%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W + I+KG+ ++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA D+WD+F SF
Sbjct: 25 WLNTILKGDCVAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSRVDACDDAWDQFDSF 84
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTRAWLLA RRVLK +G++WVIGSYHNIFR+G +LQ+L FWILND+VW KSNPMP
Sbjct: 85 EAYDAFTRAWLLAVRRVLKKDGSIWVIGSYHNIFRVGAILQDLGFWILNDVVWVKSNPMP 144
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+R NAHET+IWA+PS A YTFNYDALKA N+D+QMRSDW +P+C+G+ERL++
Sbjct: 145 NFRGKRLTNAHETMIWAAPSKDA-RYTFNYDALKAFNDDLQMRSDWHLPLCTGAERLKDG 203
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G+K+HPTQKPEALL R+L +S+KP DI+LDPFFG+GT+GAVA+KL R+F+G+E +Q YI
Sbjct: 204 GGQKVHPTQKPEALLYRVLTASSKPDDIVLDPFFGTGTTGAVARKLGRNFVGVEREQAYI 263
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D AT RIA+V+P L + GKR EPR+ F L+E GL+QPG LT ++G A V A
Sbjct: 264 DAATARIAAVEPASGACLDMQKGKRAEPRIPFGSLLEAGLLQPGATLTCSKGRHKAIVRA 323
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DG+L S GSIH+VGA V G++ CNGW FW+ E+ G I+ LR ++R L
Sbjct: 324 DGSLASADHTGSIHKVGALVQGADACNGWTFWHIEEDGTRAPIDALRQIIRSRL 377
>gi|260425326|ref|ZP_05779306.1| modification methylase CcrMI [Citreicella sp. SE45]
gi|260423266|gb|EEX16516.1| modification methylase CcrMI [Citreicella sp. SE45]
Length = 370
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 209/353 (59%), Positives = 267/353 (75%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I ++ LP +SVDLIFADPPYNLQL G+L+RPD+S VDAV D WD+F+SF
Sbjct: 15 LNTILDGDCIEMMNSLPEESVDLIFADPPYNLQLKGELHRPDNSRVDAVDDHWDQFASFA 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR WL A RRVLKPNG +WVIGSYHNIFR+G LQ+ +WILND+VWRKSNPMPN
Sbjct: 75 AYDQFTREWLAAARRVLKPNGAIWVIGSYHNIFRVGAALQDAGYWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS A YTFNY+ALKA NE +QMRSDW++PIC+G ERL++ +
Sbjct: 135 FRGKRFTNAHETMIWASK-SDAAKYTFNYEALKALNEGIQMRSDWVLPICNGGERLKDAN 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKP +LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE + Y +
Sbjct: 194 GDKAHPTQKPMSLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGRDWIGIEREAAYRE 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+AT+RIA ++ L V KR EPR+ F LVERG+++PG++L + G A V AD
Sbjct: 254 VATRRIADIRAFDRSALEVTRAKRAEPRIPFGQLVERGMLRPGEMLVSPSGK-VAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTL+ GSIH+VGA + G+ +CNGW +W+F K G+ I+ LR +R E+
Sbjct: 313 GTLVGDDVKGSIHQVGAHLEGAPSCNGWTYWHFRKDGKHVPIDVLRQQIRAEM 365
>gi|163796460|ref|ZP_02190420.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
gi|159178310|gb|EDP62854.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
Length = 370
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 204/349 (58%), Positives = 265/349 (75%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ I L LP +SVDLIFADPPYNLQL G+L RP+++ VD V D+WD+F FEAY
Sbjct: 11 RILTGDCIEELRSLPDRSVDLIFADPPYNLQLGGELLRPNNTRVDGVDDAWDRFGGFEAY 70
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F RAWL CRRVLK GTLWVIGSYHNIFR+G ++Q+L FW+LND++WRK+NPMPNFR
Sbjct: 71 DKFCRAWLGECRRVLKDTGTLWVIGSYHNIFRVGAIVQDLGFWMLNDVIWRKANPMPNFR 130
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G+RF NAHETLIWA+ S ++ YTFNYDA+KA N+D QMRSDW +P+C+G+ERL+ +DG
Sbjct: 131 GKRFTNAHETLIWAARSEDSRRYTFNYDAMKALNDDQQMRSDWFLPLCTGAERLKAEDGS 190
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPE+LL+R+L+++++PGDI+LDPFFG+GT+GAVAK+L R +IGIE Y IA
Sbjct: 191 KAHPTQKPESLLARVLLAASRPGDIVLDPFFGTGTTGAVAKRLGRRWIGIERDPGYAAIA 250
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
+KRIA V+ + + L +R +PRV F LVE GLI+PG++L +++ A V ADG
Sbjct: 251 SKRIAEVEAVDDPMALALANRREQPRVPFGRLVEEGLIRPGEVLFDSRRRWFAKVRADGH 310
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
LIS + GSIH VGA V G+ CNGW FW+ E+ G I+ R +R
Sbjct: 311 LISESHKGSIHSVGAAVQGAPACNGWTFWHAERKGMPLPIDVFRQQIRA 359
>gi|304393522|ref|ZP_07375450.1| modification methylase BabI [Ahrensia sp. R2A130]
gi|303294529|gb|EFL88901.1| modification methylase BabI [Ahrensia sp. R2A130]
Length = 416
Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 225/353 (63%), Positives = 280/353 (79%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D II+G+ ++ + +LPA SVD+IFADPPYNLQL G+L RPD S VDA D WD+F +F
Sbjct: 60 LDSIIQGDCVAAMSRLPANSVDVIFADPPYNLQLGGELSRPDQSTVDACDDHWDQFDTFA 119
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYDAF+RAWL A RRVLKPNGT+WVIGSYHNIFR+GTMLQ++ FWILNDIVWRK+NPMPN
Sbjct: 120 AYDAFSRAWLTAARRVLKPNGTIWVIGSYHNIFRVGTMLQDMQFWILNDIVWRKTNPMPN 179
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHET+IWASP PK KGYTFNYDALK AN+DVQMRSDW+ PIC+G ERL+ +D
Sbjct: 180 FRGRRFTNAHETMIWASPDPKGKGYTFNYDALKMANDDVQMRSDWVFPICTGGERLKGED 239
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K+HPTQKPEALL R+L+SSTKPGD++LDPFFG+GT+GAVAK+L R FIGIE + DYI+
Sbjct: 240 GKKVHPTQKPEALLHRVLMSSTKPGDVVLDPFFGTGTTGAVAKRLGRHFIGIERETDYIE 299
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RI +++P +LTV TGKR PRV F ++E GL+ G +LT+++ A + AD
Sbjct: 300 AARARIDAIEPGQAAQLTVTTGKRALPRVPFGAIIENGLLSAGDVLTDSKRRWKAMIRAD 359
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
G+LI E SIH+ GA+V G + CNGW FW+ E+ G+L I+ LR + R +
Sbjct: 360 GSLIESGEAASIHKTGARVQGLDACNGWTFWHVEREGKLVCIDDLRAIYRDAM 412
>gi|13476248|ref|NP_107818.1| adenine DNA methyltransferase [Mesorhizobium loti MAFF303099]
gi|14027009|dbj|BAB53963.1| adenine DNA methyltransferase [Mesorhizobium loti MAFF303099]
Length = 377
Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 238/373 (63%), Positives = 296/373 (79%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS L + EW D I+KG+ ++ L++LP KSVD+IFADPPYNLQL+G L+RP
Sbjct: 1 MSAVRLLHELSHAPQQSEWLDTILKGDCVAALDRLPEKSVDVIFADPPYNLQLDGDLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D S VDAV D WD+F +FEAYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G +Q+
Sbjct: 61 DQSKVDAVDDHWDQFENFEAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAKMQD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
L FWILND+VWRK+NPMPNFRGRRFQNAHET+IWAS K KGYTFNY+ALKA+N+D+QM
Sbjct: 121 LGFWILNDVVWRKTNPMPNFRGRRFQNAHETMIWASRDQKGKGYTFNYEALKASNDDIQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PIC+G ERL+N +G+KLHPTQKPEALL+RI+++STKPGDI+LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICTGGERLKNDNGDKLHPTQKPEALLARIMMASTKPGDIVLDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AK+L R F+GIE +Q YID A +RI +V+PL + +LTVLTGKR EPRVAF L++ GL+
Sbjct: 241 AKRLGRHFVGIEREQAYIDAANERIDAVRPLEDADLTVLTGKRAEPRVAFVSLIDTGLMT 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
PG L +A+ + V ADGT+ G GSIH++GA+V G + CNGW FW++E+ G L
Sbjct: 301 PGVTLYDAKKRWAVKVRADGTVAIGDSAGSIHKIGAEVQGLDACNGWTFWHYERSGGLTP 360
Query: 361 INTLRILVRKELY 373
I+ LR + R +
Sbjct: 361 IDELRRIARLGME 373
>gi|295687797|ref|YP_003591490.1| DNA methylase N-4/N-6 domain-containing protein [Caulobacter segnis
ATCC 21756]
gi|295429700|gb|ADG08872.1| DNA methylase N-4/N-6 domain protein [Caulobacter segnis ATCC
21756]
Length = 358
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 258/352 (73%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G+ I + LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7 TIILGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTR WL A RRVLK +G +WVIGSYHNIFR+G +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67 DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETLIWAS S AK YTFNYDALK AN++VQMRSDW IP+C+G ER++ DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +Y+ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLGHA 246
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
+RIA V P+ +L V+ KR EPRV F +VE GL+ PG L A+G A V DG+
Sbjct: 247 KERIAKVVPINPHDLEVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCAKGERVAKVRPDGS 306
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
+ G GSIH++GA V + CNGW +W+F+ L I+ LR VR +
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358
>gi|87199857|ref|YP_497114.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
gi|87135538|gb|ABD26280.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
Length = 380
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 208/348 (59%), Positives = 269/348 (77%), Gaps = 2/348 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I++G+ I+ + KLP S+D+IFADPPYNLQL G L RPD S VDAVT+ WDKFSSF A
Sbjct: 29 NQILRGDCIAEMRKLPDASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWDKFSSFAA 88
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD FTR WL+ RR+LKP+G++WVIGSYHNIFR+G +LQ+L FWILNDI+WRK+NPMPNF
Sbjct: 89 YDKFTREWLVEARRLLKPDGSIWVIGSYHNIFRVGALLQDLGFWILNDIIWRKANPMPNF 148
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWAS S K+ YTFNY A+K N+++QMRSDW++PICSG ERLR ++G
Sbjct: 149 KGTRFTNAHETLIWASKSEKS-KYTFNYRAMKTLNDELQMRSDWVLPICSGPERLR-RNG 206
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HPTQKPEALL R+++++T GD++LDPFFG+GT+GAVAK+L R++IG E + DYI++
Sbjct: 207 TKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGTGTTGAVAKRLGRNWIGCEREDDYIEV 266
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A +RI PL LT + KR+ P+VAF LVE G + PG LT +G +A V ADG
Sbjct: 267 ANERIELALPLDESALTTMQSKRSAPKVAFGALVESGYLAPGTRLTAKKGRFNAVVRADG 326
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
+L S E+GSIH +GAK+ G+ +CNGW FW+ E GE+ I+ LR L
Sbjct: 327 SLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEHEGEVKPIDALRQLY 374
>gi|393012|gb|AAA18913.1| adenine methyltransferase [Caulobacter crescentus CB15]
Length = 358
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 212/352 (60%), Positives = 257/352 (73%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G+ I + LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7 TIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTR WL A RRVLK +G +WVIGSYHNIFR+G +Q+L FWILNDIVWRKSNPMPNF+
Sbjct: 67 DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNFK 126
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETLIWAS S AK YTFNYDALK AN++VQMRSDW IP+C+G ER++ DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + + ++ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEDLEHA 246
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
RIA V P+ +L V+ KR EPRV F +VE GL+ PG L ++G A V DG+
Sbjct: 247 KARIAKVVPIAPEDLDVMGSKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDGS 306
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
+ G GSIH++GA V + CNGW +W+F+ L I+ LR VR +
Sbjct: 307 ITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGMN 358
>gi|315122079|ref|YP_004062568.1| putative modification methylase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495481|gb|ADR52080.1| putative modification methylase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 380
Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats.
Identities = 324/373 (86%), Positives = 351/373 (94%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
M++K+ L I++N+NSI WKDKIIKGNSISVLEKLPAKSVDL+FADPPYNLQLNG+L+RP
Sbjct: 1 MNKKSRLVIDQNKNSILSWKDKIIKGNSISVLEKLPAKSVDLVFADPPYNLQLNGKLHRP 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D+SLV+AVTDSWDKFSSFEAYDAFTRAWLLAC+RVLKP+GTLWVIGSYHNIFRIG MLQN
Sbjct: 61 DNSLVNAVTDSWDKFSSFEAYDAFTRAWLLACQRVLKPSGTLWVIGSYHNIFRIGAMLQN 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK+KGYTFNYDALKAANEDVQM
Sbjct: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKSKGYTFNYDALKAANEDVQM 180
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL PICSG+ERLRNKDGEKLH TQKPE+LLSRIL SSTKPGD +LDPFFGSGT+GAV
Sbjct: 181 RSDWLFPICSGAERLRNKDGEKLHATQKPESLLSRILTSSTKPGDFVLDPFFGSGTTGAV 240
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
AKKL RSF+GIEM+QDYIDIATKRI SV+PLGNIELTVLTGK+ EPRVAFNLLVERG+IQ
Sbjct: 241 AKKLGRSFLGIEMEQDYIDIATKRIESVKPLGNIELTVLTGKKAEPRVAFNLLVERGIIQ 300
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
GQ+LTNAQ NISA V DGTL+SG E GSIHRVGAKVSG ETCNGWNFWYFEK G+LHS
Sbjct: 301 AGQVLTNAQRNISAIVRVDGTLVSGVESGSIHRVGAKVSGLETCNGWNFWYFEKYGKLHS 360
Query: 361 INTLRILVRKELY 373
I+TLR LVRKELY
Sbjct: 361 IDTLRSLVRKELY 373
>gi|163760352|ref|ZP_02167434.1| modification methylase BabI [Hoeflea phototrophica DFL-43]
gi|162282303|gb|EDQ32592.1| modification methylase BabI [Hoeflea phototrophica DFL-43]
Length = 377
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 235/354 (66%), Positives = 291/354 (82%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ ++ LE LP SVD+IFADPPYNLQL G L RPD S+VDAV D WD+F SF
Sbjct: 20 WLDTIIKGDCVAALEALPENSVDVIFADPPYNLQLGGDLARPDQSVVDAVNDHWDQFESF 79
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AYDAFTRAWL+ACRRVLKPNGT+WVIGSYHNIFR+G+ LQ++ FW+LNDIVWRK+NPMP
Sbjct: 80 AAYDAFTRAWLMACRRVLKPNGTIWVIGSYHNIFRVGSQLQDIGFWLLNDIVWRKTNPMP 139
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHET+IWAS AK YTFNY+A+KA+N+DVQMRSDWL PIC+G+ERL+
Sbjct: 140 NFRGRRFQNAHETMIWASRDQNAKSYTFNYEAMKASNDDVQMRSDWLFPICTGAERLKGD 199
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG+K+HPTQKPEALL+R+L++S+KPGD++LDPFFGSGT+GAVA++L R F+GIE +QDYI
Sbjct: 200 DGKKVHPTQKPEALLARVLMASSKPGDVVLDPFFGSGTTGAVARRLGRHFVGIEREQDYI 259
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D A RI +V+PLG ELTV+TGKR EPRVAFN+L+E G ++PG +L +A+ A V A
Sbjct: 260 DAARARIDAVEPLGKNELTVMTGKRAEPRVAFNVLIEAGHVKPGDVLHDAKRKHQAIVRA 319
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGTL++ + GSIH+VGA V G + CNGW FW+ E L I+ R ++RKE+
Sbjct: 320 DGTLVANGQAGSIHKVGAHVQGFDACNGWTFWHLETSDGLTVIDEFRSVIRKEM 373
>gi|240850100|ref|YP_002971493.1| adenine DNA methyltransferase [Bartonella grahamii as4aup]
gi|240267223|gb|ACS50811.1| adenine DNA methyltransferase [Bartonella grahamii as4aup]
Length = 378
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 245/358 (68%), Positives = 299/358 (83%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S W++KI KG+ +SVLEKLP SVD+IFADPPYNLQL+G LYRPDHSLVDAV D+WD+
Sbjct: 15 SQMPWRNKIFKGDCVSVLEKLPKHSVDMIFADPPYNLQLDGALYRPDHSLVDAVDDAWDQ 74
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F SF AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+
Sbjct: 75 FESFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKN 134
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
NPMPNFRGRRFQNAHETLIWA K K YTFNYDALKAANED+QMRSDWL P+C+G+ER
Sbjct: 135 NPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDLQMRSDWLFPLCTGAER 194
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
L++ G KLHPTQKP+ALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE +
Sbjct: 195 LKDDSGRKLHPTQKPQALLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIERE 254
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
QDYID A +RIA+V+PL EL +L K+ EPRVAFN L+E GL+ PG++L + + +SA
Sbjct: 255 QDYIDAACERIAAVKPLAQPELAILDRKKAEPRVAFNSLLEAGLLYPGEVLYDRKKQVSA 314
Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
V ADGT++ G E GSIH +G K S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 315 IVRADGTIMHGGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDHLRMIIRSQM 372
>gi|163867893|ref|YP_001609097.1| adenine DNA methyltransferase protein CcrM [Bartonella tribocorum
CIP 105476]
gi|161017544|emb|CAK01102.1| adenine DNA methyltransferase protein CcrM [Bartonella tribocorum
CIP 105476]
Length = 378
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 243/358 (67%), Positives = 298/358 (83%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S W++KI KG+ ++VLEKLP SVD+IFADPPYNLQL G LYRPDHSLVDAV D+WD+
Sbjct: 15 SQMPWRNKIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGALYRPDHSLVDAVDDAWDQ 74
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+
Sbjct: 75 FESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKN 134
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
NPMPNFRGRRFQNAHETLIWA K K YTFNYDALKAANED+QMRSDWL P+C+G+ER
Sbjct: 135 NPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDLQMRSDWLFPLCTGAER 194
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
L++ G KLHPTQKP+ALL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE +
Sbjct: 195 LKDDSGRKLHPTQKPQALLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIERE 254
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
QDYID A +RIA+V+PL EL +L K+ EPRVAFN L+E GL+ PG++L + + +SA
Sbjct: 255 QDYIDAACERIAAVKPLAQPELAILDRKKAEPRVAFNSLLEAGLLYPGEVLYDRKKQVSA 314
Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
V ADGT++ G E GSIH +G K S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 315 IVRADGTIMHGGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDHLRMIIRSQM 372
>gi|114570743|ref|YP_757423.1| DNA methylase N-4/N-6 domain-containing protein [Maricaulis maris
MCS10]
gi|114341205|gb|ABI66485.1| DNA methylase N-4/N-6 domain protein [Maricaulis maris MCS10]
Length = 359
Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats.
Identities = 197/354 (55%), Positives = 263/354 (74%), Gaps = 1/354 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I++G + V++ LP +SVDL+FADPPYNLQL G L+RPD+S V AV + WD+ F+
Sbjct: 7 DQILEGECVEVMKSLPDESVDLVFADPPYNLQLGGDLHRPDNSKVSAVDNDWDQIGGFDE 66
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD FT W+ RRVLKPNG +WVIGSYHNIFR+G +LQ+ FW+LNDI+WRKSNPMPNF
Sbjct: 67 YDLFTWNWMEEARRVLKPNGAIWVIGSYHNIFRVGGILQDAGFWVLNDIIWRKSNPMPNF 126
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWA+ + A+ TFNY A+KA N+ VQMRSDW +PIC+G ERL+++DG
Sbjct: 127 KGTRFTNAHETLIWAAKTKDARP-TFNYAAMKALNDGVQMRSDWTLPICTGGERLKDEDG 185
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K HPTQKPE+LL R+L+S+T PGD++LDPFFG+GT+GA AK+L R +IGIE Y+D+
Sbjct: 186 KKAHPTQKPESLLHRVLLSTTNPGDVVLDPFFGTGTTGAAAKRLGRHYIGIERDTAYLDV 245
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KR+A++ + L V KR +PR+ F LVERG+++PG L +G +A V ADG
Sbjct: 246 ARKRLAAITRGASDTLDVTQSKRAQPRIPFGALVERGMLKPGDTLYCPKGRNTARVRADG 305
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
TLI+GT GSIH+VGA++ + +CNGW +W+ L I+ +R +R L N
Sbjct: 306 TLIAGTSAGSIHQVGAQLQSAPSCNGWTYWHIRTKQGLAPIDVMRAEIRATLEN 359
>gi|89052883|ref|YP_508334.1| DNA methylase N-4/N-6 [Jannaschia sp. CCS1]
gi|88862432|gb|ABD53309.1| DNA methylase N-4/N-6 [Jannaschia sp. CCS1]
Length = 367
Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats.
Identities = 209/353 (59%), Positives = 270/353 (76%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I V+ LP SVDLIFADPPYNLQL G L+RP++SLVDAV + WD+F SF+
Sbjct: 15 LNTILAGDCIDVMNALPEASVDLIFADPPYNLQLKGDLHRPNNSLVDAVDNDWDQFDSFK 74
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYDAFT+AWL A +R+LKP G +WVIGSYHNIFR+G LQ +WILND+VWRKSNPMPN
Sbjct: 75 AYDAFTKAWLAAAKRLLKPGGAIWVIGSYHNIFRVGAELQTQGYWILNDVVWRKSNPMPN 134
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS A YTFNY+ALK NE +QMRSDW++PIC+GSERL++
Sbjct: 135 FRGKRFTNAHETMIWASKDEGA-KYTFNYEALKELNEGIQMRSDWVLPICNGSERLKDDK 193
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE ++ Y
Sbjct: 194 GDKAHPTQKPESLLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKALGRDYIGIEREEAYRV 253
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A KR++ V+ + V T KR EPRV F LVERG+++PG++L + +G A V AD
Sbjct: 254 VAEKRLSRVRKFDKTSIAVTTPKRAEPRVPFGQLVERGMLRPGEMLFSPRGQ-QAKVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTLI+ GSIH+VGA++ G+ +CNGW +W F++ G+ SI+ LR +R E+
Sbjct: 313 GTLIADDVKGSIHKVGAELEGAPSCNGWTYWNFKRDGKNVSIDVLRQQIRAEM 365
>gi|84502791|ref|ZP_01000904.1| modification methylase [Oceanicola batsensis HTCC2597]
gi|84388774|gb|EAQ01644.1| modification methylase [Oceanicola batsensis HTCC2597]
Length = 363
Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 211/354 (59%), Positives = 265/354 (74%), Gaps = 2/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I + LP SVDLIFADPPYNLQL GQL+RPD+S VDAV D WD+F SF
Sbjct: 12 LNTILAGDCIEQMNALPEASVDLIFADPPYNLQLKGQLHRPDNSEVDAVDDHWDQFDSFA 71
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR WL A RR+LKP+G +WVIGSYHNIFR+G LQ+ +WILND+VWRKSNPMPN
Sbjct: 72 AYDRFTRDWLAAARRLLKPDGAIWVIGSYHNIFRVGAALQDAGYWILNDVVWRKSNPMPN 131
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG+RF NAHET+IWAS S A YTFNY+ALK+ NE +QMRSDW++PIC+G ERL++
Sbjct: 132 FRGKRFTNAHETMIWASKSEGA-KYTFNYEALKSLNEGIQMRSDWVLPICNGGERLKDAK 190
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPEALL R+LV ST PGD++LDPFFG+GT+GAVAK L R +IGIE ++ Y
Sbjct: 191 GDKAHPTQKPEALLHRVLVGSTNPGDVVLDPFFGTGTTGAVAKMLGREYIGIEREEAYRK 250
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A RI+ V+ L V T KR EPRV F LVERG+++PG+ L N +G +A V AD
Sbjct: 251 VAEARISKVRKFDRDALIVSTSKRAEPRVPFGQLVERGMLRPGETLVNTRGQ-AARVRAD 309
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTL + GSIH+VGA + G+ +CNGW +W+F K G+ I+ +R +R E+
Sbjct: 310 GTLATDGFNGSIHQVGAHIEGAPSCNGWTYWHFLKDGKTIPIDLMRQQIRAEMN 363
>gi|307941627|ref|ZP_07656982.1| modification methylase SmeI [Roseibium sp. TrichSKD4]
gi|307775235|gb|EFO34441.1| modification methylase SmeI [Roseibium sp. TrichSKD4]
Length = 372
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 211/365 (57%), Positives = 276/365 (75%), Gaps = 1/365 (0%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
++ N W + I +G+ +S LE+LP+KSVDL+FADPPYNLQL G L RPD S VDA
Sbjct: 9 SQGSNPEPSWLNTIHRGDCVSALERLPSKSVDLVFADPPYNLQLGGDLMRPDDSKVDACD 68
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
D WD+F+SFEAYDAFTRAWLLA RRV+KP+G+L+VIGSYHNIFR+G +LQ+L FWI+NDI
Sbjct: 69 DHWDQFASFEAYDAFTRAWLLAVRRVMKPDGSLYVIGSYHNIFRVGAILQDLGFWIMNDI 128
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+W KSNPMPNFRG+RF NAHET+IWA+ S AK TFNYDALK N+D+QMRSDW +P+C
Sbjct: 129 IWLKSNPMPNFRGKRFTNAHETIIWATKSKDAKP-TFNYDALKTFNDDLQMRSDWQLPLC 187
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+G ERL+++ G+K+HPTQKPEALL R+L +S+ PGD++LDPFFG+GT+GAVAKKL R+++
Sbjct: 188 TGGERLKDEAGQKVHPTQKPEALLYRVLTASSTPGDVVLDPFFGTGTTGAVAKKLGRNYV 247
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
G+E ++DYI A R+A++ P L + GKR E R+ F L+E GL++PG L+ A+
Sbjct: 248 GVEREEDYIRHAEARLAAITPGDAETLEMQKGKRAEKRIPFGSLLETGLMKPGTELSCAK 307
Query: 310 GNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
G A V ADG+L G GSIH+VGA V G ++CNGW FW+ I++LR +R
Sbjct: 308 GQHLAVVRADGSLKCGNHTGSIHKVGALVQGQQSCNGWTFWHVGSGKTRTPIDSLRQDLR 367
Query: 370 KELYN 374
L +
Sbjct: 368 SRLQS 372
>gi|302383800|ref|YP_003819623.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
ATCC 15264]
gi|302194428|gb|ADL02000.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 359
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 205/353 (58%), Positives = 258/353 (73%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I +G+ + +L LP +SVD++FADPPYNLQL G L RPD+S VDAV D WDKF SF A
Sbjct: 7 DIIHRGDCLEILRGLPDRSVDMVFADPPYNLQLGGDLLRPDNSKVDAVDDDWDKFDSFAA 66
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAF R WL CRRVLK G+LWVIGSYHNIFR+GT +Q++ +W+LNDIVWRK+NPMPNF
Sbjct: 67 YDAFCRDWLKECRRVLKDEGSLWVIGSYHNIFRLGTAIQDIGYWVLNDIVWRKTNPMPNF 126
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWA+ S + K YTFNYDALKA NED QMRSDW +C+G ER++ +DG
Sbjct: 127 KGTRFTNAHETLIWAAKSREQKRYTFNYDALKAFNEDTQMRSDWTFALCTGEERIKGEDG 186
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K HPTQKPEALL R+++++T+PGD+ILDPFFG+GT+GA AK+L R +IGIE +Y ++
Sbjct: 187 KKAHPTQKPEALLHRVILAATRPGDVILDPFFGTGTTGAAAKRLGRHYIGIERDPEYANV 246
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KRI +V P +L V KR E +V F LVE GL+ PG +L +G A V ADG
Sbjct: 247 AEKRIKAVLPARPEDLIVTGSKRAEVKVPFGALVEAGLLSPGDVLYCPKGEREARVRADG 306
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
+L+SG GSIH++GA + CNGW +W F L SI+ LR VR +
Sbjct: 307 SLVSGAMSGSIHKLGALFENAPACNGWTYWRFRTDTGLRSIDALRAEVRAGMQ 359
>gi|254293434|ref|YP_003059457.1| DNA methylase N-4/N-6 domain protein [Hirschia baltica ATCC 49814]
gi|254041965|gb|ACT58760.1| DNA methylase N-4/N-6 domain protein [Hirschia baltica ATCC 49814]
Length = 363
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 208/353 (58%), Positives = 267/353 (75%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KD I+ G+ I ++ LP KSVDL+FADPPYNLQL G L RPD+S VDAV + WD+F+SFE
Sbjct: 8 KDHILIGDCIELMNSLPEKSVDLVFADPPYNLQLGGDLVRPDNSKVDAVDNEWDQFASFE 67
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT+ WL A RRVLK +G +WVIGSYHNIFR+G+ LQ+L FWILND++W KSNPMPN
Sbjct: 68 TYDNFTKDWLTAARRVLKDDGAIWVIGSYHNIFRVGSQLQDLGFWILNDVIWNKSNPMPN 127
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHETLIWA+ S + K YTFNYDALK AN+DVQMRSDW IPICSG ERL+N +
Sbjct: 128 FKGTRFTNAHETLIWATKSKEQKKYTFNYDALKTANDDVQMRSDWTIPICSGGERLKNDE 187
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPEALL R+++++TK GD +LDPFFG+GT+GAVAK L R FIG+E ++DY
Sbjct: 188 GKKAHPTQKPEALLHRVIMATTKQGDTVLDPFFGTGTTGAVAKMLGRHFIGLEREEDYAA 247
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A RI +V+ + +++L V KR+ PRV F L+ERG ++PG L + A V AD
Sbjct: 248 VAQARIDNVRKVDDVDLQVTQPKRSAPRVPFGALIERGFLRPGDRLYCPKQQHIARVRAD 307
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
G+L +G + GSIHR+GA+V + +CNGW FW+++ L I+ LR R E+
Sbjct: 308 GSLANGDDTGSIHRLGAQVQNAPSCNGWTFWHYKSDQGLAPIDLLRRKFRTEM 360
>gi|144899369|emb|CAM76233.1| DNA methylase N-4/N-6 [Magnetospirillum gryphiswaldense MSR-1]
Length = 357
Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats.
Identities = 215/355 (60%), Positives = 272/355 (76%), Gaps = 3/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I++G+ I+ +E LPAKSVDL+FADPPYNLQL G+L RP++S VD V D WD+F SF
Sbjct: 5 LDTILQGDCIAQMEALPAKSVDLVFADPPYNLQLGGELLRPNNSRVDGVDDDWDRFDSFR 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR WL A RRVLK +G LWVIGSYHNIFR+G LQ+L FW+LNDIVWRKSNPMPN
Sbjct: 65 DYDDFTRRWLAAARRVLKDDGALWVIGSYHNIFRVGASLQDLGFWMLNDIVWRKSNPMPN 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG RF NAHETLIW + S ++ YTFNY+A+KA N+D+QMRSDW IP+C+GSERL+N D
Sbjct: 125 FRGTRFTNAHETLIWCAKSAES-RYTFNYEAMKALNDDLQMRSDWTIPLCTGSERLKN-D 182
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K+HPTQKPE LL R+L+++TKPGD++LDPFFG+GT+GAVAKKL+R FIG E DYI
Sbjct: 183 GTKVHPTQKPEMLLYRVLMATTKPGDVVLDPFFGTGTTGAVAKKLKRHFIGCERDPDYIK 242
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT-NAQGNISATVCA 318
A +RI+ V+P+ + L K++EPRV F +VERGL++ G +L N + +++A V A
Sbjct: 243 AAQERISKVRPVSELSLLSTPSKKSEPRVPFGTVVERGLLEVGTVLYGNGKDSLTAKVRA 302
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
DGTLIS GSIH+VGA V + CNGW FW+ ++ EL I+ LR +R EL+
Sbjct: 303 DGTLISADHRGSIHKVGALVQNAPACNGWTFWHLKQGDELVPIDVLRQKIRAELH 357
>gi|49475250|ref|YP_033291.1| adenine DNA methyltransferase protein [Bartonella henselae str.
Houston-1]
gi|49238055|emb|CAF27262.1| Adenine DNA methyltransferase protein [Bartonella henselae str.
Houston-1]
Length = 378
Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats.
Identities = 243/356 (68%), Positives = 296/356 (83%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
W++KI+KG+ ++VLEKLP SVD+IFADPPYNLQL G LYRPDHSLVDAV D+WD+F
Sbjct: 17 MSWRNKILKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGALYRPDHSLVDAVDDAWDQFE 76
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+F AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FWILNDI+WRK+NP
Sbjct: 77 NFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWILNDIIWRKNNP 136
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
MPNFRGRRFQNAHETLIWA K K YTFNYDALKAANED+QMRSDWL P+C+G+ERL+
Sbjct: 137 MPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDIQMRSDWLFPLCTGAERLK 196
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++ G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R F+GIE +Q
Sbjct: 197 DEAGRKLHPTQKPQPLLARIIIASSKPGDIILDPFFGSGTTGAVAKLLGRDFVGIEREQQ 256
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
YID A +RIA ++PL EL +L K+ EPRVAFN L+E GLI PG++L + + +SA V
Sbjct: 257 YIDAAYERIAKIKPLNEPELAILDRKKAEPRVAFNSLLEAGLICPGEVLYDRKKQVSAIV 316
Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
ADGTL+ G E GSIH +G K ++CNGW FWY+E+ G+L SIN LR+++R ++
Sbjct: 317 RADGTLMYGGEAGSIHAMGRKAQDLQSCNGWTFWYYEEDGQLKSINELRMVIRSQM 372
>gi|110633120|ref|YP_673328.1| DNA adenine methylase CcrM [Mesorhizobium sp. BNC1]
gi|110284104|gb|ABG62163.1| DNA adenine methylase CcrM [Chelativorans sp. BNC1]
Length = 372
Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats.
Identities = 234/355 (65%), Positives = 288/355 (81%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+W D I+KG+ ++ LE+LP KSVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F S
Sbjct: 18 DWLDDILKGDCVAALERLPEKSVDVIFADPPYNLQLEGALHRPDQSLVDAVDDEWDQFES 77
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F AYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPM
Sbjct: 78 FAAYDAFTRAWLLAARRVLKPNGTVWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKTNPM 137
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PNFRGRRFQNAHET+IWAS AKGYTFNY+A+KAAN+D+QMRSDWL PIC+G ERL++
Sbjct: 138 PNFRGRRFQNAHETMIWASRDRNAKGYTFNYEAMKAANDDLQMRSDWLFPICTGKERLKD 197
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
DG K+HPTQKPEALL+R+L+SSTKPGD++LDPFFGSGT+GAVAK+L R F+GIE DY
Sbjct: 198 ADGNKVHPTQKPEALLARVLLSSTKPGDVVLDPFFGSGTTGAVAKRLGRHFVGIERDPDY 257
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
I A +RIA+V+PL L + KR EPR+AF L++ GL++PG L +++ +A V
Sbjct: 258 IAAARERIAAVEPLDQAALAPMAAKREEPRIAFASLLDSGLVKPGMQLYDSKRRWAAHVR 317
Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
ADGTL G E GSIHR+GA+V G + CNGW FW++E+ G L I+ LR + R+ L
Sbjct: 318 ADGTLAVGPETGSIHRLGARVQGLDACNGWTFWHYEEKGALKPIDELRQVARRGL 372
>gi|326387696|ref|ZP_08209302.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
gi|326207742|gb|EGD58553.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
Length = 388
Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats.
Identities = 203/348 (58%), Positives = 269/348 (77%), Gaps = 1/348 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I++G+ I + LP S+D+IFADPPYNLQL G L RPD S VDAVT+ WDKF SF A
Sbjct: 36 NQILRGDCIEQMRALPTASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWDKFDSFAA 95
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAFTR WL RR+LKP+G++WVIGSYHNIFR+G +LQ++ FWILNDIVWRK+NPMPNF
Sbjct: 96 YDAFTREWLAEARRLLKPDGSIWVIGSYHNIFRVGAILQDMGFWILNDIVWRKANPMPNF 155
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWAS S K+ YTFNY A+K N+++QMRSDW++PICSG ERLRNK G
Sbjct: 156 KGTRFTNAHETLIWASRSEKS-KYTFNYRAMKTLNDELQMRSDWVLPICSGQERLRNKRG 214
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HPTQKPE+LL R+++++T PGD++LDPFFG+GT+GAVAK+L R +IG E ++ YI++
Sbjct: 215 AKAHPTQKPESLLYRVMLATTNPGDVVLDPFFGTGTTGAVAKRLGRHWIGCEREEGYIEV 274
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A +RI PL L + ++++PRVAF LVE G I+PG +L++ +G TV ADG
Sbjct: 275 AEERIEMALPLDETALKTMQSRKSQPRVAFGQLVESGWIRPGAVLSDRKGRYCVTVRADG 334
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
++++G + GSIH +GAK+ G+ +CNGW FW+ E G++ I+ LR L
Sbjct: 335 SIMAGDDSGSIHGIGAKLQGAPSCNGWTFWHIEHEGQVKQIDALRQLY 382
>gi|315498149|ref|YP_004086953.1| DNA methylase n-4/n-6 domain protein [Asticcacaulis excentricus CB
48]
gi|315416161|gb|ADU12802.1| DNA methylase N-4/N-6 domain protein [Asticcacaulis excentricus CB
48]
Length = 371
Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats.
Identities = 202/354 (57%), Positives = 261/354 (73%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I G + +L+ LP KSVDL+FADPPYNLQL G L+RPD+S VDAV D WD+F+SFE
Sbjct: 18 LDTIHVGECVDILKSLPDKSVDLVFADPPYNLQLGGDLHRPDNSKVDAVDDEWDQFASFE 77
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR W+ C+RVLK +G +WVIGSYHN+FR+G LQ+L FW++ND++WRK+NPMPN
Sbjct: 78 AYDRFTREWMRECQRVLKDDGAIWVIGSYHNVFRLGVALQDLGFWVMNDVIWRKANPMPN 137
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHETLIWA+ + K YTFNYDALKA NED QMRSDW IP+C+G ERL+++D
Sbjct: 138 FKGTRFTNAHETLIWATKAKGQKRYTFNYDALKAFNEDTQMRSDWAIPLCTGEERLKDED 197
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K+HPTQKPE+LL R+L++ +KPG ++LDPFFG+GT+GA AK+L R FIGIE + Y
Sbjct: 198 GNKVHPTQKPESLLYRVLLACSKPGHVVLDPFFGTGTTGAAAKRLGRHFIGIERDETYAK 257
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A +RIA VQ +L + K+ EPRV F LVE GL+QPG L +G +A V AD
Sbjct: 258 HARERIARVQRANESDLATMGSKKAEPRVPFGALVEAGLLQPGDTLYCPKGQRTARVRAD 317
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
G+L+ G GSIH+VGA + + +CNGW FW F+ I+ LR +R++ +
Sbjct: 318 GSLVHGELTGSIHKVGAMLEQAPSCNGWTFWRFKTDAGFKPIDDLRARIRQQGH 371
>gi|329850291|ref|ZP_08265136.1| modification methylase CcrMI [Asticcacaulis biprosthecum C19]
gi|328840606|gb|EGF90177.1| modification methylase CcrMI [Asticcacaulis biprosthecum C19]
Length = 374
Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats.
Identities = 201/354 (56%), Positives = 258/354 (72%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I G I VL+ LP SVDL+FADPPYNLQL G L RPD+S VDAV D WD+F+SFE
Sbjct: 21 LDTIHIGECIEVLKSLPDASVDLVFADPPYNLQLGGDLLRPDNSKVDAVDDEWDQFASFE 80
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTR W+ CRRVLK +G +WVIGSYHNIFR+G +Q+L FW++ND++WRK+NPMPN
Sbjct: 81 VYDKFTREWMRECRRVLKDDGAMWVIGSYHNIFRLGVAMQDLGFWVMNDVIWRKANPMPN 140
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHETLIWA+ + K YTFNYDALKA NED QMRSDWLI +C+G ERL++++
Sbjct: 141 FKGTRFTNAHETLIWATKAKGQKRYTFNYDALKAFNEDTQMRSDWLISLCTGDERLKDEN 200
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE+LL R+L++ +KPG ++LDPFFG+GT+GA AK+L R FIGIE + Y
Sbjct: 201 GNKAHPTQKPESLLYRVLLACSKPGQVVLDPFFGTGTTGAAAKRLGRHFIGIERDETYAR 260
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A +RIA V P L V+ K+ EPR+ F LVE GL+QPG +L +G+ +A + AD
Sbjct: 261 HARERIAKVIPTTAENLNVVGSKKAEPRIPFGSLVEAGLLQPGDMLYTPKGDKTAKIRAD 320
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
G+L+ G GSIH++GA + S CNGW +W F+ L I+ LR +R ++
Sbjct: 321 GSLVYGDLSGSIHKMGAMMEQSPACNGWTYWRFKTDAGLKPIDDLRARIRGDMN 374
>gi|319898539|ref|YP_004158632.1| adenine DNA methyltransferase protein CcrM [Bartonella clarridgeiae
73]
gi|319402503|emb|CBI76046.1| adenine DNA methyltransferase protein CcrM [Bartonella clarridgeiae
73]
Length = 386
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 237/359 (66%), Positives = 297/359 (82%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+S +W++KI KG+ ++VLEKLP SVD+IFADPPYNLQL G LYRPDHS V+AV D+WD
Sbjct: 22 SSQTQWRNKIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGVLYRPDHSRVNAVDDAWD 81
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK
Sbjct: 82 QFESFSAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRK 141
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+NPMPNFRGRRFQNAHETLIWA K K YTFNY+ALKAANED QMRSDWL P+C+G+E
Sbjct: 142 NNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYNALKAANEDRQMRSDWLFPLCTGAE 201
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
RL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK R F+GIE
Sbjct: 202 RLKDKVGRKLHPTQKPQSLLARIIIASSKPGDVILDPFFGSGTTGAVAKLFGRDFVGIER 261
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
+Q YID A +RIA+++PL EL +L K+TEPRVAF+ L++ GL+ PG +L + + IS
Sbjct: 262 EQHYIDAACERIAAIKPLAESELEILKTKKTEPRVAFSSLLDLGLLYPGSVLYDKKKEIS 321
Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
A V ADGT++ G E GSIH +G K S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 322 AIVRADGTIMYGGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDDLRMMIRSQM 380
>gi|114798609|ref|YP_760602.1| modification methylase CcrM [Hyphomonas neptunium ATCC 15444]
gi|114738783|gb|ABI76908.1| modification methylase CcrM [Hyphomonas neptunium ATCC 15444]
Length = 360
Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats.
Identities = 192/354 (54%), Positives = 253/354 (71%), Gaps = 2/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ II+G+ I VL ++P KSVDL+FADPPYNLQL G L RPD S+VD V D WDKF+SF+
Sbjct: 5 RNTIIQGDCIEVLSRIPDKSVDLVFADPPYNLQLGGGLTRPDQSVVDGVDDEWDKFASFD 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT WL CRRVLK +G +WVIGSYHNIFR+GT+LQ+ FWI ND++W KSNPMPN
Sbjct: 65 DYDLFTHQWLEECRRVLKDDGAIWVIGSYHNIFRVGTVLQDQGFWIQNDVIWLKSNPMPN 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RFQNAHETLIWA S ++ TFNYDALK NED QMRSDW IP+C+G ERL+++
Sbjct: 125 FKGTRFQNAHETLIWAGKSKDSRV-TFNYDALKTFNEDKQMRSDWTIPLCTGGERLKDEA 183
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE+LL R+L++++ P D++LDPF G+GT+ A A++L R FIGIE ++ Y
Sbjct: 184 GRKAHPTQKPESLLHRVLLATSNPRDLVLDPFSGTGTTAAAARRLGRDFIGIEREEGYAR 243
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
++ RI ++ PL L K++ RV F L+E G ++PG L +AQ A + D
Sbjct: 244 LSRARINAITPLEGEVLETERSKKSLARVPFGALIETGWLKPGDRLFSAQRRHQARIRVD 303
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKEL 372
G+L +G GSIHR+GA+V + CNGW +W++E L I+ LR R+E+
Sbjct: 304 GSLTTGAITGSIHRLGAQVQQAPACNGWTYWHYETDKRDLAPIDLLRRRYREEM 357
>gi|83313087|ref|YP_423351.1| modification methylase CcrMI [Magnetospirillum magneticum AMB-1]
gi|82947928|dbj|BAE52792.1| Modification methylase CcrmI [Magnetospirillum magneticum AMB-1]
Length = 358
Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 206/356 (57%), Positives = 263/356 (73%), Gaps = 4/356 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I+++ LPA SVDLIFADPPYNLQL G+L RP++S V+ V + WD+FS F
Sbjct: 5 LNTILSGDCIAMMNSLPAGSVDLIFADPPYNLQLGGELLRPNNSKVEGVDEEWDRFSDFA 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD+FTR WL A RRVLK +G LWVIGSYHNIFR+G++LQ+L FW+LNDIVWRKSNPMPN
Sbjct: 65 AYDSFTRDWLKAARRVLKDDGGLWVIGSYHNIFRVGSILQDLGFWMLNDIVWRKSNPMPN 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHET+IW + S + YTFNYD +KA N+D+QMRSDW +P+C+G ERLRN
Sbjct: 125 FKGTRFTNAHETMIWCAKSSDS-RYTFNYDTMKALNDDLQMRSDWTLPLCTGGERLRNA- 182
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE+LL R++++STKPGD++LDPFFG+GT+GAVAKKL R+FIG E +YI
Sbjct: 183 GRKTHPTQKPESLLYRVIMASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPEYIA 242
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS-ATVCA 318
A RIA V P+ + L + KR EPRV F ++ERGL+ G +L + A V A
Sbjct: 243 AAKDRIAKVIPVADPSLLLTPSKRAEPRVPFGTVLERGLLTAGDLLFGGTRHDKVAKVRA 302
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKELY 373
DGTLI+ GSIH+VGA V G+ CNGW +W+F+ E I+ LR +R EL+
Sbjct: 303 DGTLITDDHRGSIHKVGALVQGAPACNGWTYWHFQASSEDFLPIDVLRQKIRAELH 358
>gi|126724760|ref|ZP_01740603.1| Site-specific DNA-methyltransferase [Rhodobacterales bacterium
HTCC2150]
gi|126705924|gb|EBA05014.1| Site-specific DNA-methyltransferase [Rhodobacterales bacterium
HTCC2150]
Length = 345
Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats.
Identities = 204/343 (59%), Positives = 261/343 (76%), Gaps = 1/343 (0%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ LP SVDLIFADPPYNLQL G L+RPD+S VDAV D WD+F SF YD F+ AWL A
Sbjct: 1 MNALPENSVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDHWDQFDSFRVYDEFSNAWLKA 60
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
+R+LKP+G +WVIGSYHNIFR+GT +QN FW+LND++WRKSNPMPNFRG+RF NAHET
Sbjct: 61 AQRILKPDGAIWVIGSYHNIFRVGTAMQNAGFWMLNDVIWRKSNPMPNFRGKRFTNAHET 120
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
LIWAS + K+K TFNY+ALKA NE +QMRSDW++P+C+G ERL+N+DG+K HPTQKPE+
Sbjct: 121 LIWASKTEKSKP-TFNYEALKALNEGIQMRSDWVLPLCTGHERLKNEDGDKAHPTQKPES 179
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
LL R+LV++T PGD++LDPFFG+GT+GAVAKKL R FIGIE +++Y +AT R+ V+
Sbjct: 180 LLHRVLVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEEYRKVATARLRDVRKY 239
Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
L V KR EPRV F +VERG++ PG+ L + G A V ADGTLI GSI
Sbjct: 240 DRSSLEVTQSKRAEPRVPFGQIVERGMLNPGENLFSLNGRHKAKVRADGTLIGDDVKGSI 299
Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
H+VGA + G+ +CNGW +W ++ G++ I+ LR VR E+ +
Sbjct: 300 HQVGAALEGAPSCNGWTYWGYKSEGKMVPIDLLRQQVRAEMSD 342
>gi|94497422|ref|ZP_01303992.1| DNA methylase N-4/N-6 [Sphingomonas sp. SKA58]
gi|94423053|gb|EAT08084.1| DNA methylase N-4/N-6 [Sphingomonas sp. SKA58]
Length = 391
Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats.
Identities = 200/348 (57%), Positives = 264/348 (75%), Gaps = 2/348 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D +++G+ I+ + LP K +D+IFADPPYNLQL G L+RP+ S VDAV + WDKF + +
Sbjct: 40 DTLLRGDCIAQMAALPDKCIDMIFADPPYNLQLGGDLFRPEGSRVDAVDNDWDKFDTLGS 99
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD FT+AWL RR+LKPNGT+WVIGSYHNIFR+G+ LQ+ FWILNDI+WRK+NPMPNF
Sbjct: 100 YDRFTKAWLREARRILKPNGTIWVIGSYHNIFRVGSALQDEGFWILNDIIWRKANPMPNF 159
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWAS A YTFNY A+K N+++QMRSDW++PIC G ERL+ ++G
Sbjct: 160 KGTRFTNAHETLIWASQGEDA-KYTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNG 217
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HPTQKPE+LL R+L+S TKPGD++LDPFFG+GT+GAVAK+L R +IGIE ++DYI++
Sbjct: 218 TKAHPTQKPESLLYRVLLSCTKPGDVVLDPFFGTGTTGAVAKRLGRRWIGIEREEDYIEV 277
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A +RIA PL LT++ R++P+VAF LVE G ++PG ILT+ + A V ADG
Sbjct: 278 ALERIADALPLDESALTIMQSARSQPKVAFGTLVETGYLKPGAILTDTKRRWQAQVRADG 337
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
+L G + GSIH++GA + G+ +CNGW FW++E G L I+ LR
Sbjct: 338 SLAVGADSGSIHKMGATLQGAPSCNGWTFWHYEAEGGLKPIDALRQTY 385
>gi|49474012|ref|YP_032054.1| adenine DNA methyltransferase protein [Bartonella quintana str.
Toulouse]
gi|49239515|emb|CAF25872.1| Adenine DNA methyltransferase protein [Bartonella quintana str.
Toulouse]
Length = 378
Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats.
Identities = 242/361 (67%), Positives = 297/361 (82%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+S W++KI+KG+ ++VLEKLP SVD+IFADPPYNLQL+G LYRPDHSLVDAV D+
Sbjct: 12 RTSSQTSWRNKILKGDCVAVLEKLPKHSVDVIFADPPYNLQLDGALYRPDHSLVDAVDDA 71
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
WD+F SF AYDAFTRAWLLACRRVLKP+GTLWVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72 WDQFESFAAYDAFTRAWLLACRRVLKPHGTLWVIGSYHNIFRVGTALQDLGFWMLNDIIW 131
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RK+NPMPNFRGRRFQNAHETLIWA K K YTFNYDALKA NEDVQMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAGNEDVQMRSDWLFPLCTG 191
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ERL+++ G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R F+GI
Sbjct: 192 AERLKDEAGRKLHPTQKPQTLLTRIIMASSKPGDIILDPFFGSGTTGAVAKLLGRDFVGI 251
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
E +Q YID A +RIA+V+PL EL +L K+ EPRVAFN L+E GL+ PG++L + +
Sbjct: 252 EREQQYIDAAYERIAAVEPLNKPELAILDRKKAEPRVAFNSLLEAGLLCPGEVLYDRKKR 311
Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
+SA V ADGTL+ E GSIH +G K S++CNGW FWY+E+ G L SI+ LR+++R
Sbjct: 312 VSAIVRADGTLMYSGEAGSIHAMGRKAQDSQSCNGWTFWYYEENGRLKSIDGLRMIIRSR 371
Query: 372 L 372
+
Sbjct: 372 M 372
>gi|23016143|ref|ZP_00055902.1| COG0863: DNA modification methylase [Magnetospirillum
magnetotacticum MS-1]
Length = 358
Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats.
Identities = 205/356 (57%), Positives = 266/356 (74%), Gaps = 4/356 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I+++ LPA SVDL+FADPPYNLQL G+L RP++S V+ V + WD+FS F
Sbjct: 5 LNTILSGDCIAMMNSLPAGSVDLVFADPPYNLQLGGELLRPNNSKVEGVDEDWDRFSDFA 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYDAFTR WL A RRVLK +G LWVIGSYHNIFR+G +LQ+L FW+LNDIVWRK+NPMPN
Sbjct: 65 AYDAFTREWLKAARRVLKDDGGLWVIGSYHNIFRVGAILQDLGFWMLNDIVWRKTNPMPN 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHET+IW + S + YTFNYD++K+ N+D+QMRSDW +P+C+G+ERLR K
Sbjct: 125 FKGTRFTNAHETMIWCAKSSDS-RYTFNYDSMKSLNDDLQMRSDWTLPLCTGAERLR-KA 182
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE+LL R++++STKPGD++LDPFFG+GT+GAVAKKL R+FIG E DYI
Sbjct: 183 GRKTHPTQKPESLLYRVIMASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPDYIA 242
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS-ATVCA 318
A +RIA V + + L + KR EPR+ F ++ERGL+ PG +L + A V A
Sbjct: 243 AAKERIAKVIQVADPSLLMTPSKRAEPRIPFGTVLERGLLTPGDLLFGGTRHDKVAKVRA 302
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLRILVRKELY 373
DGTLI+ GSIH+VGA V G+ CNGW +W+F+ GE I+ LR +R EL+
Sbjct: 303 DGTLITDDHRGSIHKVGALVQGAPACNGWTYWHFQASGEDYLPIDVLRQKIRAELH 358
>gi|121602378|ref|YP_988732.1| modification methylase CcrMI [Bartonella bacilliformis KC583]
gi|120614555|gb|ABM45156.1| modification methylase CcrMI [Bartonella bacilliformis KC583]
Length = 378
Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats.
Identities = 239/361 (66%), Positives = 298/361 (82%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
N S W ++I KG+ ++VLEKLP SVD+IFADPPYNLQL G LYRPDHSLVDAV D+
Sbjct: 12 NSPSQIPWCNQIFKGDCVAVLEKLPKHSVDMIFADPPYNLQLEGVLYRPDHSLVDAVDDA 71
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
WD+F SF AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+W
Sbjct: 72 WDQFESFAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTTLQDLGFWVLNDIIW 131
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RK+NPMPNFRGRRFQNAHETLIWA K K YTFNYD+LKAAN+DVQMRSDWL P+C+G
Sbjct: 132 RKNNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDSLKAANDDVQMRSDWLFPLCTG 191
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ERL+++ G+KLHPTQKP+ALL+RI+++++K GD+ILDPFFGSGT+GAVAK L R+F+GI
Sbjct: 192 AERLKDEAGDKLHPTQKPQALLARIIMAASKSGDVILDPFFGSGTTGAVAKLLGRNFVGI 251
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
E +Q YID A +RIA+V+PL EL ++ GK+ EPRVAF L+E GL+ PG +L + +
Sbjct: 252 EREQRYIDAAHERIAAVKPLAKSELEIIKGKKAEPRVAFINLLEAGLLCPGSVLYDKKKR 311
Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
+SA V ADGT++ E GSIH +G KV S++CNGW FWY+E G+L SI+ LR+++R +
Sbjct: 312 VSAIVRADGTIMCDNEAGSIHAIGRKVQVSQSCNGWTFWYYEDNGKLKSIDDLRMVIRSQ 371
Query: 372 L 372
+
Sbjct: 372 I 372
>gi|294012714|ref|YP_003546174.1| putative adenine-specific DNA-methyltransferase [Sphingobium
japonicum UT26S]
gi|292676044|dbj|BAI97562.1| putative adenine-specific DNA-methyltransferase [Sphingobium
japonicum UT26S]
Length = 371
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 200/348 (57%), Positives = 264/348 (75%), Gaps = 2/348 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D++++G+ I+ + KLP +D+IFADPPYNLQL G L+RP+ VDAV + WDKF + +
Sbjct: 20 DRLLRGDCIAEMAKLPDACIDMIFADPPYNLQLGGDLFRPEGGRVDAVDNDWDKFDTLGS 79
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD FT+AWL RR+LKPNGT+WVIGSYHNIFR+GT LQ+ FWILNDIVWRKSNPMPNF
Sbjct: 80 YDRFTKAWLREARRILKPNGTIWVIGSYHNIFRVGTALQDEGFWILNDIVWRKSNPMPNF 139
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G RF NAHETLIWAS A YTFNY A+K N+++QMRSDW++PIC G ERL+ ++G
Sbjct: 140 KGTRFTNAHETLIWASQGEDA-KYTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNG 197
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HPTQKPEALL R+L++ T+PGD++LDPFFG+GT+GAVAK+L R +IGIE ++DYI++
Sbjct: 198 TKAHPTQKPEALLYRVLLACTRPGDVVLDPFFGTGTTGAVAKRLGRRWIGIEREEDYIEV 257
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A +RI + PL LT++ + +P+VAF LVE G +QPG +LT+++ A V ADG
Sbjct: 258 ALERIEAALPLDESALTIMQSAKAQPKVAFGTLVETGYLQPGAVLTDSKRRWQAVVRADG 317
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
+L GT+ GSIH++GA + G+ +CNGW FW+ E G L I+ LR
Sbjct: 318 SLSVGTDTGSIHKMGATLQGAPSCNGWTFWHCEVEGVLKPIDALRQTY 365
>gi|319406873|emb|CBI80508.1| adenine DNA methyltransferase protein CcrM [Bartonella sp. 1-1C]
Length = 378
Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats.
Identities = 238/359 (66%), Positives = 299/359 (83%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+S +W++KI KG+ ++VLEKLP SVD+IFADPPYNLQL G LYRPD+S VDAV D+WD
Sbjct: 14 SSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLEGVLYRPDYSRVDAVDDAWD 73
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK
Sbjct: 74 QFESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRK 133
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+NPMPNFRGRRFQNAHETLIWA K K YTFNYDALKAANED QMRSDWL P+C+G+E
Sbjct: 134 NNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDRQMRSDWLFPLCTGAE 193
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
RL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R+F+GIE
Sbjct: 194 RLKDKIGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRNFVGIER 253
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
+Q YID A++RIA+V+PL EL +L K+ EPR+AF+ L++ GL+ PG IL + + +S
Sbjct: 254 EQHYIDAASERIAAVKPLAKSELEILKTKKAEPRIAFSSLLDAGLLYPGSILYDKKKEVS 313
Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
A V ADGT++ E GSIH +G K S++CNGW FWY+E+ G L SI++LR++VR ++
Sbjct: 314 ALVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDSLRMMVRSQM 372
>gi|148557470|ref|YP_001265052.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
wittichii RW1]
gi|148502660|gb|ABQ70914.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
Length = 382
Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats.
Identities = 205/354 (57%), Positives = 264/354 (74%), Gaps = 2/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I++G+ I + LP + VD+IFADPPYNLQL G L+RPD S VDAV D WDKF +F
Sbjct: 28 LNEILRGDCIETMRALPDRCVDMIFADPPYNLQLGGDLHRPDGSQVDAVDDDWDKFDTFA 87
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR WL R+LK +GT+WVIGSYHNIFR+GT LQ+ FW+LNDIVWRK+NPMPN
Sbjct: 88 AYDRFTRDWLREAHRILKDDGTIWVIGSYHNIFRVGTALQDQGFWVLNDIVWRKANPMPN 147
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHETLIW S + KA YTFNY +KA N+DVQMRSDW +PICSG ERL++ D
Sbjct: 148 FKGTRFTNAHETLIWCSKAEKA-KYTFNYRTMKALNDDVQMRSDWTLPICSGGERLKDDD 206
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE+LL R++++ T+PGD++LDPFFG+GT+GAVA++L R +IGIE + YI
Sbjct: 207 GHKAHPTQKPESLLYRVMLACTEPGDLVLDPFFGTGTTGAVARRLGRRWIGIEREDKYIK 266
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+AT+RIA+ PL + + K+ PR+AF LLVE GLI PG ++T+A+ SATV AD
Sbjct: 267 VATQRIAATLPLDESAMMSIPEKKAMPRIAFGLLVEGGLIPPGSVVTDARRRWSATVRAD 326
Query: 320 GTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
G L SG +GSIHR+GA++ + +CNGW+FW+ E L I+ +R EL
Sbjct: 327 GMLASGCGAIGSIHRLGAQLQKAPSCNGWSFWHIETAQGLEPIDAVRQRHLAEL 380
>gi|209966434|ref|YP_002299349.1| modification methylase, putative [Rhodospirillum centenum SW]
gi|209959900|gb|ACJ00537.1| modification methylase, putative [Rhodospirillum centenum SW]
Length = 366
Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 203/357 (56%), Positives = 270/357 (75%), Gaps = 5/357 (1%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ G+ I ++ ++PA SVD++FADPPYNLQL+G+L RP+HS VD V + WD+FS
Sbjct: 11 NRILVGDCIQLMSQMPAGSVDMVFADPPYNLQLSGELLRPNHSRVDGVDEEWDRFSDLPT 70
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD FTR WL A R LK +GTLWVIGSYHNIFR+G++LQ+L FWILNDIVWRKSNPMPNF
Sbjct: 71 YDRFTRDWLGAARHALKDDGTLWVIGSYHNIFRVGSILQDLGFWILNDIVWRKSNPMPNF 130
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+GRRF NAHETLIW + S +A Y F Y+A+K NE++QMRSDW +P+C+G+ERLR +DG
Sbjct: 131 KGRRFTNAHETLIWVAKSREA-KYYFAYEAMKNLNEELQMRSDWTLPLCTGAERLRGEDG 189
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K HPTQKPEALL R+L+++T+P D++LDPFFG+GT+GAVAK+LRR +IGIE + +Y +
Sbjct: 190 QKAHPTQKPEALLYRVLLAATRPDDLVLDPFFGTGTTGAVAKQLRRRWIGIEREHEYARL 249
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A RIA+V+ L EL + +RT+PRV F LVERGL++PG L + + + A V ADG
Sbjct: 250 ANARIAAVEELAEPELVDVPARRTQPRVPFGHLVERGLLKPGTNLFDQRRRVIAKVRADG 309
Query: 321 TLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
TL++ G GSIH+VGA V G CNGW +W+F++ L I+ LR V E++
Sbjct: 310 TLVAQNHLGQHSGSIHKVGAAVQGLPACNGWTYWHFQEGKSLAPIDVLRQKVIAEMH 366
>gi|114769696|ref|ZP_01447306.1| Site-specific DNA-methyltransferase [alpha proteobacterium
HTCC2255]
gi|114549401|gb|EAU52283.1| Site-specific DNA-methyltransferase [alpha proteobacterium
HTCC2255]
Length = 368
Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 214/362 (59%), Positives = 270/362 (74%), Gaps = 1/362 (0%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ + SI + II G+ + V+ LP S+DLIFADPPYNLQL G L+RPD+S VDAV D
Sbjct: 6 KKEGSIKLPLNNIIDGDCVEVMNSLPENSIDLIFADPPYNLQLKGDLHRPDNSKVDAVDD 65
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
WD+F SF YD F+R WL A RRVLKPNG LWVIGSYHNIFR+GT LQ+ FWILND++
Sbjct: 66 HWDQFDSFAIYDKFSRNWLKAARRVLKPNGALWVIGSYHNIFRVGTALQDAGFWILNDVI 125
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
WRKSNPMPNFRG R NAHET+IWA + K+K TFNY+ALKA N+ VQMRSDW +PIC+
Sbjct: 126 WRKSNPMPNFRGVRLTNAHETMIWAGKTEKSKP-TFNYEALKALNDGVQMRSDWHLPICN 184
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G+ERL+N G+K HPTQKPE+LL R++V ST GD+ILDPFFGSGT+GAVAKKL R+FIG
Sbjct: 185 GNERLKNDAGDKAHPTQKPESLLHRVIVGSTNEGDVILDPFFGSGTTGAVAKKLGRNFIG 244
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
IE +++Y +A KRI +++ L V T KR EPRV F +VERG+++PG L + G
Sbjct: 245 IEREEEYRKVAKKRIKAIKKYDVESLKVSTSKRAEPRVPFGQVVERGMLKPGDQLYSLNG 304
Query: 311 NISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
SA + ADGTL++ + GSIH+VGA + G+ +CNGW +W F+K GE I+ LR +R
Sbjct: 305 RHSAKIHADGTLVAHDQRGSIHQVGAALEGAPSCNGWTYWCFKKRGEAIPIDMLRKKIRA 364
Query: 371 EL 372
E+
Sbjct: 365 EM 366
>gi|115526424|ref|YP_783335.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
palustris BisA53]
gi|115520371|gb|ABJ08355.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris BisA53]
Length = 379
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 214/351 (60%), Positives = 268/351 (76%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ ++ + KLP SVDL+FADPPYNLQL G L RPD S VDAV D WDKFSSF AY
Sbjct: 26 RIVIGDCVAEMSKLPKASVDLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFSSFAAY 85
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLL+CRR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 86 DDFTRAWLLSCRRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKSNPMPNFR 145
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+ DG+
Sbjct: 146 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGDERLKGADGK 205
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R +IG E +DY A
Sbjct: 206 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKDYAKAA 265
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
RI +++PL L R+ PRVAF LVERG+I PG L +++ A V ADG
Sbjct: 266 RARIDAIEPLPEATLAPFVTARSAPRVAFAELVERGMILPGTKLVDSKKRHGALVRADGA 325
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
++ G ++GSIHR+GA GSE CNGW FW+ E L I+ LR +R +
Sbjct: 326 IMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETKKGLKLIDELRAEIRSGM 376
>gi|39934101|ref|NP_946377.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris CGA009]
gi|192289628|ref|YP_001990233.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
TIE-1]
gi|39647949|emb|CAE26469.1| possible adenine DNA methyltransferase [Rhodopseudomonas palustris
CGA009]
gi|192283377|gb|ACE99757.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 376
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 275/351 (78%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+ I+ +EKLP KSVDL+FADPPYNLQL G L RPD S VDAV D WDKF+SF AY
Sbjct: 24 RIIVGDCIAEMEKLPPKSVDLVFADPPYNLQLKGALKRPDESEVDAVDDDWDKFASFAAY 83
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLLA RR++KP+ TLWVIGSYHNIFR+GT++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 84 DNFTRAWLLAARRIMKPSATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKSNPMPNFR 143
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGDERLKGKDGK 203
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IGIE + Y + A
Sbjct: 204 KVHPTQKPEQLLARVLLSSSKPGDLVVDPFNGTGTTGAVAKRLRRNYIGIERDKTYAEAA 263
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
RI S++PL + L R PRVAF+ L+ERG+I PG L +++ A V ADG
Sbjct: 264 RARIDSIEPLPDDTLKPFLTARDAPRVAFSELIERGMISPGARLVDSKKRHGALVRADGA 323
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
++ G ++GSIHR+GA GSE CNGW FW+ E L I+ LR +R +
Sbjct: 324 IMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETSKGLRLIDELRAEIRSTM 374
>gi|298294362|ref|YP_003696301.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
gi|296930873|gb|ADH91682.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
Length = 395
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 229/358 (63%), Positives = 281/358 (78%), Gaps = 5/358 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I++G+ ++ L KLPA+SVD++FADPPYNLQL G+L RPD S VDAV D+WDKF SF+
Sbjct: 33 LDTILRGDCVAELSKLPARSVDMVFADPPYNLQLQGELKRPDDSRVDAVDDAWDKFESFQ 92
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYDAFTRAWLLA RRVLKP GTLWVIGSYHNIFR+G +LQ+L+FWILNDIVWRK+NPMPN
Sbjct: 93 AYDAFTRAWLLAVRRVLKPTGTLWVIGSYHNIFRVGALLQDLDFWILNDIVWRKTNPMPN 152
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ P AKGYTFNY+ALKAANEDVQMRSDWL PICSG ERL+++D
Sbjct: 153 FRGRRFTNAHETLIWAAREPGAKGYTFNYEALKAANEDVQMRSDWLFPICSGGERLKDED 212
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G KLHPTQKPEALL+R+++S++KPGD++LDPF GSGT+ AVA++L R F+GIE Y D
Sbjct: 213 GRKLHPTQKPEALLARVILSASKPGDVVLDPFLGSGTTAAVARRLGRHFVGIERDPTYAD 272
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RI +V+PL ++ L + R PRVAFN L+ERGL+ PG +LT+A+ A V AD
Sbjct: 273 AAQARIDAVEPLPDLALALAPTAREAPRVAFNSLIERGLLAPGTLLTDAKARTRALVRAD 332
Query: 320 GTLISG-----TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GTL ++GSIHR GA G + CNGW +W+ E L I+TLR ++R E+
Sbjct: 333 GTLSLETAPGLGQIGSIHRAGALAQGLDACNGWTYWHVETREGLKPIDTLRAVMRSEM 390
>gi|323135965|ref|ZP_08071048.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
gi|322399056|gb|EFY01575.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
Length = 392
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 207/354 (58%), Positives = 263/354 (74%), Gaps = 1/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ I++G+ + ++ LP +SVDL+FADPPYNLQL +L RPD SLVDAV D WDKF+ F
Sbjct: 34 RNAILQGDCVELMRGLPHESVDLVFADPPYNLQLASKLTRPDQSLVDAVDDDWDKFADFA 93
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YDAFTR WL A RRV+KP+ T++VIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPMPN
Sbjct: 94 TYDAFTRDWLSAARRVMKPSATIFVIGSYHNIFRVGAIMQDLGFWILNDIVWRKNNPMPN 153
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHET+IWA+ AK YTFNY+ALKA NED QMRSDWL+PIC+G+ERL++ +
Sbjct: 154 FRGRRFTNAHETMIWAARDASAKSYTFNYEALKAGNEDCQMRSDWLLPICTGAERLKDAE 213
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE LL+R+++S++ GD++LDPFFGSGT+GAVAK+LRR F+G+E Y
Sbjct: 214 GRKAHPTQKPETLLARVILSASNAGDLVLDPFFGSGTTGAVAKRLRRDFLGLERDPVYAK 273
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RIA ++PL ++V KR EPR+AF LVE GLI PG LT+ + A V AD
Sbjct: 274 AANARIAEIEPLPEHAVSVAPSKRAEPRIAFASLVESGLIAPGARLTDLKKRHVAMVRAD 333
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH-SINTLRILVRKEL 372
GTL +GSIH+ GA G CNGW FW++EK L I+ LR +R +
Sbjct: 334 GTLSLSGFIGSIHKTGALAQGLPACNGWTFWHYEKADGLVAPIDELRAQMRDHM 387
>gi|154245121|ref|YP_001416079.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154159206|gb|ABS66422.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
Py2]
Length = 389
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 234/355 (65%), Positives = 279/355 (78%), Gaps = 3/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D+I+ G+SI ++ LPA SVDL+FADPPYNLQL G+L RPD SLVDAV D WD+F SF
Sbjct: 31 LDQILLGDSIQMMAGLPAGSVDLVFADPPYNLQLGGELKRPDESLVDAVDDDWDRFDSFA 90
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YDAFTRAWLLA RR LKPNGTL+VIGSYHNIFR+G M+Q+L FWILNDIVWRK+NPMPN
Sbjct: 91 TYDAFTRAWLLAARRALKPNGTLFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKANPMPN 150
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ S A YTFNY+ALKA NEDVQ+RSDWL P+C+G ERL++
Sbjct: 151 FRGRRFTNAHETLIWAARSADA-KYTFNYEALKAGNEDVQVRSDWLFPLCTGQERLKDGA 209
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+KLHPTQKPEALL+R+L+S+TKPGD++LDPFFGSGT+GAVAK+LRRSFIGIE ++ Y
Sbjct: 210 GKKLHPTQKPEALLARVLLSATKPGDVVLDPFFGSGTTGAVAKRLRRSFIGIEREEAYAQ 269
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RI +V+PL L R PRVAF++LVERGL+ PG LT+A+G A V AD
Sbjct: 270 AARARIDAVEPLPEDALVAPPSAREAPRVAFSVLVERGLVTPGAELTDAKGRFRAVVRAD 329
Query: 320 GT--LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GT L G +GSIHRVGA G+E CNGW FW+ E+ G H I+TLR +R E+
Sbjct: 330 GTLALAGGQNVGSIHRVGALAQGAEACNGWTFWHVEEQGRRHPIDTLRARLRAEM 384
>gi|319408230|emb|CBI81883.1| adenine DNA methyltransferase protein CcrM [Bartonella
schoenbuchensis R1]
Length = 378
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 239/355 (67%), Positives = 294/355 (82%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+W +KI+KG+ +++LEKLP SVD+IFADPPYNLQL LYRPD+S VDAV D+WD+F +
Sbjct: 18 QWCNKILKGDCVAMLEKLPKHSVDMIFADPPYNLQLENTLYRPDYSRVDAVNDAWDQFEN 77
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR+GT LQ+L FW+LNDI+WRK+NPM
Sbjct: 78 FAAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRVGTALQDLGFWLLNDIIWRKNNPM 137
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PNFRGRRFQNAHETLIWA K K YTFNY ALKAANEDVQMRSDWL P+C+G+ERL++
Sbjct: 138 PNFRGRRFQNAHETLIWAVRDQKDKKYTFNYKALKAANEDVQMRSDWLFPLCTGAERLKD 197
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ G KLHPTQKP+ LL+RI+++S+KPGDIILDPFFGSGT+GAVAK L R+F+GIE +Q Y
Sbjct: 198 EIGRKLHPTQKPQTLLARIIMASSKPGDIILDPFFGSGTTGAVAKLLGRNFVGIEREQSY 257
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
ID A +RIA V+PL ELTVL K+ EPRVAF L+E GL+ PG IL + + +SA V
Sbjct: 258 IDAAHERIAMVKPLAESELTVLANKKAEPRVAFTNLLEAGLLHPGMILYDRKKRVSAIVK 317
Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
ADGT++ G E GSIH +G K S++CNGW FWY+E+ G+L SI+ LR+++R ++
Sbjct: 318 ADGTIMYGGEAGSIHMMGRKAQASQSCNGWTFWYYEEDGQLKSIDDLRMVIRSQM 372
>gi|319403861|emb|CBI77447.1| adenine DNA methyltransferase protein CcrM [Bartonella rochalimae
ATCC BAA-1498]
Length = 378
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 235/359 (65%), Positives = 296/359 (82%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+S +W++KI KG+ ++VLEKLP SVD+IFADPPYNLQL LYRPD+S VDAV D+WD
Sbjct: 14 SSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLESVLYRPDYSRVDAVDDAWD 73
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK
Sbjct: 74 QFESFAAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRK 133
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+NPMPNFRGRRFQNAHETLIWA K K Y FNYDALKAANED QMRSDWL P+C+G+E
Sbjct: 134 NNPMPNFRGRRFQNAHETLIWAVRDQKDKKYIFNYDALKAANEDRQMRSDWLFPLCTGAE 193
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
RL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE
Sbjct: 194 RLKDKIGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIER 253
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
+Q YID A++RIA+V+PL EL +L K+ EPR+AF+ L++ GL+ PG IL + + +S
Sbjct: 254 EQHYIDAASERIAAVKPLAKSELEILKTKKAEPRIAFSSLLDAGLLYPGSILYDKKKEVS 313
Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
A V ADGT++ E GSIH +G K S++CNGW FWY+E+ G L SI++LR+++R ++
Sbjct: 314 ALVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDSLRMMIRSQM 372
>gi|307294524|ref|ZP_07574366.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
L-1]
gi|306878998|gb|EFN10216.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
L-1]
Length = 379
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 198/346 (57%), Positives = 260/346 (75%), Gaps = 2/346 (0%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++G+ I+ + KLP +D+IFADPPYNLQL G L+RP+ VDAV + WDKF + +YD
Sbjct: 30 LLRGDCIAEMAKLPDACIDMIFADPPYNLQLGGDLFRPEGGRVDAVDNDWDKFDTLGSYD 89
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
FT+AWL RR+LKPNG++WVIGSYHNIFR+GT LQ+ FWILNDI+WRKSNPMPNF+G
Sbjct: 90 RFTKAWLREARRILKPNGSIWVIGSYHNIFRVGTALQDEGFWILNDIIWRKSNPMPNFKG 149
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
RF NAHETLIWAS A YTFNY A+K N+++QMRSDW++PIC G ERL+ ++G K
Sbjct: 150 TRFTNAHETLIWASQGEDA-KYTFNYKAMKTLNDELQMRSDWVLPICGGQERLK-RNGTK 207
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPEALL R++++ TKPGD++LDPFFG+GT+GAVAK+L R +IGIE + DYI++A
Sbjct: 208 AHPTQKPEALLYRVMLACTKPGDVVLDPFFGTGTTGAVAKRLGRKWIGIEREDDYIEVAL 267
Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
+RI + PL LT++ R +P+VAF LVE G +QPG +LT+A+ A V ADG+L
Sbjct: 268 ERIEAALPLDESALTIMQTARQQPKVAFGTLVETGYLQPGAVLTDAKRRWQAVVRADGSL 327
Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
G + GSIH++GA + G+ +CNGW FW+ E G L I+ LR
Sbjct: 328 SVGKDTGSIHKMGATLQGAPSCNGWTFWHCEIDGALKPIDALRQTY 373
>gi|319405302|emb|CBI78916.1| adenine DNA methyltransferase protein CcrM [Bartonella sp. AR 15-3]
Length = 378
Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats.
Identities = 240/359 (66%), Positives = 295/359 (82%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+S +W++KI KG+ ++VLEKLP SVD+IFADPPYNLQL G LYRPD+S VDAV D+WD
Sbjct: 14 SSQTQWRNKIFKGDCVAVLEKLPKHSVDVIFADPPYNLQLEGVLYRPDYSRVDAVDDAWD 73
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+F SF AYDAFTRAWLLACRRVLKPNGT+WVIGSYHNIFR+GT LQ+L FW+LNDI+WRK
Sbjct: 74 QFESFSAYDAFTRAWLLACRRVLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRK 133
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+NPMPNFRGRRFQNAHETLIWA K K YTFNYDALKAANED QMRSDWL P+C+G+E
Sbjct: 134 NNPMPNFRGRRFQNAHETLIWAVRDQKDKKYTFNYDALKAANEDRQMRSDWLFPLCTGAE 193
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
RL++K G KLHPTQKP++LL+RI+++S+KPGD+ILDPFFGSGT+GAVAK L R F+GIE
Sbjct: 194 RLKDKVGRKLHPTQKPQSLLARIIMASSKPGDVILDPFFGSGTTGAVAKLLGRDFVGIER 253
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
+Q YID A +RIA V+PL EL +L KRTEPRVAF+ L++ L+ PG IL + + IS
Sbjct: 254 EQHYIDAACERIAVVKPLAKSELEILKTKRTEPRVAFSSLLDARLLYPGSILYDKKKEIS 313
Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
A V ADGT++ E GSIH +G K S++CNGW FWY+E+ G L SI+ LR+++R ++
Sbjct: 314 AIVRADGTIMYDGEAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDDLRMMIRSQM 372
>gi|85373286|ref|YP_457348.1| modification methylase [Erythrobacter litoralis HTCC2594]
gi|84786369|gb|ABC62551.1| modification methylase [Erythrobacter litoralis HTCC2594]
Length = 380
Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats.
Identities = 194/347 (55%), Positives = 252/347 (72%), Gaps = 2/347 (0%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ + + LP SVDL+FADPPYNLQL G L RPD S VDAVTD WD+F SF Y
Sbjct: 30 QILSGDCVEAMRSLPDASVDLVFADPPYNLQLGGDLNRPDGSHVDAVTDHWDQFDSFAIY 89
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTR WL +R+LKP+G LWVIGSYHNI+R+G +LQ+L FWILNDIVWRK+NPMPNFR
Sbjct: 90 DQFTREWLTEAKRILKPDGALWVIGSYHNIYRVGAILQDLGFWILNDIVWRKTNPMPNFR 149
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETL+WAS KA Y FNY A+K N+++QMRSDW+IPIC+G+ERL+ ++G
Sbjct: 150 GTRFTNAHETLLWASQGEKA-KYHFNYTAMKTLNDELQMRSDWVIPICNGAERLK-ENGT 207
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL R+L+++T+ GD+++DPFFG+GT+GAVAK+L R +IG E + Y +A
Sbjct: 208 KAHPTQKPEALLYRVLLATTEKGDVVVDPFFGTGTTGAVAKRLGREWIGCEREDVYRGVA 267
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
KRI PL L V+ KR P+VAF LVE G ++PG + + + ATV ADG+
Sbjct: 268 MKRIEKELPLDESALKVMQSKRAAPKVAFGALVEAGFLKPGTEVFDTKRRWVATVRADGS 327
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
L G + GSIH +G ++ G+ +CNGW FW++E G ++ R L
Sbjct: 328 LECGKQTGSIHGLGKELQGAPSCNGWTFWHYEDEGVAKPLDAARQLY 374
>gi|316932563|ref|YP_004107545.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315600277|gb|ADU42812.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
DX-1]
Length = 376
Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats.
Identities = 219/351 (62%), Positives = 274/351 (78%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+ I+ +EKLPAKSVDL+FADPPYNLQL G L RPD S VDAV D WDKF+SF AY
Sbjct: 24 QIIVGDCIAEMEKLPAKSVDLVFADPPYNLQLKGALKRPDESEVDAVDDDWDKFASFAAY 83
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLLA RR++KP+ TLWVIGSYHNIFR+G ++Q+L FW+LNDIVWRKSNPMPNFR
Sbjct: 84 DNFTRAWLLAARRIMKPSATLWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKSNPMPNFR 143
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGEERLKGKDGK 203
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS++PGD+++DPF G+GT+GAVAK+LRR++IG E + Y + A
Sbjct: 204 KVHPTQKPEQLLARVLLSSSRPGDLVVDPFNGTGTTGAVAKRLRRNYIGFERDRTYAEAA 263
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
RI +++PL + L R PRVAF+ L+ERG+I PG L +++ A V ADG
Sbjct: 264 RARIDAIEPLPDDTLKPFLTARDAPRVAFSELIERGMISPGARLVDSKKRHGALVRADGA 323
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
++ G ++GSIHR+GA GSE CNGW FW+ E L I+ LR +R +
Sbjct: 324 IMLGDKVGSIHRIGAMAQGSEACNGWTFWHVETSKGLRLIDELRTEIRNTM 374
>gi|85707872|ref|ZP_01038938.1| Site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
gi|85689406|gb|EAQ29409.1| Site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
Length = 379
Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats.
Identities = 200/348 (57%), Positives = 255/348 (73%), Gaps = 2/348 (0%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ I + LP SVD +FADPPYNLQL G L RPD S VDAVTD WD+F SF AY
Sbjct: 29 QILDGDCIEAMRSLPDNSVDCVFADPPYNLQLGGDLNRPDGSEVDAVTDHWDQFDSFRAY 88
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTR WL RRVLKP+G+LWVIGSYHNIFR G +LQ+L FWILNDIVWRK+NPMPNF+
Sbjct: 89 DDFTREWLTEARRVLKPDGSLWVIGSYHNIFRCGAILQDLGFWILNDIVWRKTNPMPNFK 148
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETLIWAS KA Y FNY A+K N+++QMRSDW++PICSG ERL+ ++G+
Sbjct: 149 GTRFTNAHETLIWASQGEKA-RYHFNYRAMKTLNDELQMRSDWVLPICSGGERLK-ENGK 206
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL R+L+++T+ GD++LDPFFG+GT+GAVAK+L R +IG E ++ Y +A
Sbjct: 207 KAHPTQKPEALLYRVLLATTEKGDVVLDPFFGTGTTGAVAKRLGREWIGCEREEFYRGVA 266
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
KRI PL LT + K+ PRVAF +VE GLI PG + + + ATV ADG+
Sbjct: 267 MKRIEKELPLDESALTTMQSKKAAPRVAFGAVVENGLIPPGTQVFDKKRRWVATVRADGS 326
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
L ++GSIH +G ++ + +CNGW FW++E GE+ ++ R L R
Sbjct: 327 LDCDGKVGSIHGLGKELQEAPSCNGWTFWHYENGGEIKPVDAARELYR 374
>gi|296284401|ref|ZP_06862399.1| modification methylase [Citromicrobium bathyomarinum JL354]
Length = 383
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 200/347 (57%), Positives = 254/347 (73%), Gaps = 1/347 (0%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ + + +LP SVDL+FADPPYNLQL G L RPD S VDAVTD WD+F SF+ Y
Sbjct: 32 QILDGDCVEAMRRLPDNSVDLVFADPPYNLQLGGDLNRPDGSHVDAVTDHWDQFDSFKVY 91
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F++AWL CRRVLKP+G LWVIGSYHNI+R+G LQ+L FWILNDIVWRK+NPMPNFR
Sbjct: 92 DDFSKAWLAECRRVLKPDGALWVIGSYHNIYRLGATLQDLGFWILNDIVWRKTNPMPNFR 151
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETLIWAS KA Y FNY A+K N+++QMRSDW PICSG ERL++ G
Sbjct: 152 GTRFTNAHETLIWASQGEKA-RYHFNYRAMKTLNDELQMRSDWTFPICSGGERLKDDAGH 210
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL R+L+++T+ GD++LDPFFG+GT+GA+AK+L R +IG E ++ Y +A
Sbjct: 211 KAHPTQKPEALLYRVLLATTEWGDVVLDPFFGTGTTGAIAKRLGREWIGCEREESYRKVA 270
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
RI PL LT + KRT PRVAF LVE G ++PG + + Q +ATV ADG+
Sbjct: 271 RARIEKELPLDESALTTMQSKRTAPRVAFGTLVEAGFVKPGTQVFDKQRRWTATVRADGS 330
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
L+ GSIH+VG + G+ +CNGW FW+FE G + +++ R L
Sbjct: 331 LVHEKLNGSIHQVGKDLQGAPSCNGWTFWHFEDEGAVKALDAARQLY 377
>gi|296116693|ref|ZP_06835303.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295976905|gb|EFG83673.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 364
Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats.
Identities = 200/352 (56%), Positives = 262/352 (74%), Gaps = 1/352 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D+I++G+ + +++ LPA S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ +
Sbjct: 6 LDQILRGDCVEMMQTLPAGSIDCVFADPPYNLQLRGELRRPDDSIVDGVDDDWDKFADLQ 65
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTRAWL RRVL+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPN
Sbjct: 66 AYDRFTRAWLSEARRVLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPN 125
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ P + Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN+
Sbjct: 126 FRGRRFTNAHETLIWAARGPDS-RYRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNEH 184
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G KLHPTQKPE+LL R+L++ST D++LDPF G+GT+ A+A++LRR FIGIE DY +
Sbjct: 185 GLKLHPTQKPESLLHRVLIASTNVDDVVLDPFTGTGTTPAMARRLRRRFIGIERHPDYAE 244
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A R +P+ + +R PR+ F LVER ++ PG +L + Q +SATV D
Sbjct: 245 AAIGRARREKPVPLDSVLTTPARRECPRIPFGTLVERAILPPGTVLMDRQKRVSATVAPD 304
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
GTLISG GSIH++GA ++ + +CNGW FW+FE+ G L ++ LR +R E
Sbjct: 305 GTLISGGHRGSIHKLGATLTNAPSCNGWTFWHFERAGVLQPLDILRNELRAE 356
>gi|90420098|ref|ZP_01228006.1| DNA modification methylase BabI [Aurantimonas manganoxydans
SI85-9A1]
gi|90335432|gb|EAS49182.1| DNA modification methylase BabI [Aurantimonas manganoxydans
SI85-9A1]
Length = 379
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 228/354 (64%), Positives = 280/354 (79%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D+I KG+ +S + LP SVD+IFADPPYNLQL G L+RPD S VDAV D WD+F SF
Sbjct: 21 WLDRIHKGHCVSQMAALPENSVDVIFADPPYNLQLGGDLHRPDQSKVDAVDDHWDQFESF 80
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AYDAFTRAWLLA RRVLKPNGT+WVIGSYHNIFR+G M+Q+L FW+LND+VWRK+NPMP
Sbjct: 81 QAYDAFTRAWLLAARRVLKPNGTIWVIGSYHNIFRVGAMMQDLGFWMLNDVVWRKTNPMP 140
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRGRRFQNAHET+IWAS AKGYTFNYDA+K+AN+DVQMRSDWL PICSG ERL++
Sbjct: 141 NFRGRRFQNAHETMIWASRDANAKGYTFNYDAMKSANDDVQMRSDWLFPICSGGERLKDA 200
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G K HPTQKPEALL+R+L+SSTKPGD++LDPFFG+GT+GAVAK+L R ++GIE + YI
Sbjct: 201 EGRKTHPTQKPEALLARVLLSSTKPGDVVLDPFFGTGTTGAVAKRLGRHYVGIEREDVYI 260
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ A RIA+V+ L L V GKR EPR+ F L+E GL+QPG LT+A+ +A V A
Sbjct: 261 EAAEARIAAVEALDPTVLKVSAGKRAEPRIPFASLLEAGLVQPGTELTDAKRRWTARVRA 320
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ G + SIHR+GAKV G + CNGW FW+ + L I+TLR +R ++
Sbjct: 321 DGTIAIGEDAASIHRIGAKVQGLDACNGWTFWHIDSKKGLTPIDTLRQTMRDQM 374
>gi|149185912|ref|ZP_01864227.1| modification methylase [Erythrobacter sp. SD-21]
gi|148830473|gb|EDL48909.1| modification methylase [Erythrobacter sp. SD-21]
Length = 380
Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats.
Identities = 196/347 (56%), Positives = 256/347 (73%), Gaps = 2/347 (0%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ + + ++P+ S+DL+FADPPYNLQL G L RPD S VDAVTD WDKF +F AY
Sbjct: 30 QILDGDCVEAMRQIPSASIDLVFADPPYNLQLGGDLNRPDGSHVDAVTDDWDKFDTFSAY 89
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTR WL+ +R+LKP+G LWVIGSYHNI+R+G +LQ+L FWILNDIVWRKSNPMPNFR
Sbjct: 90 DTFTRDWLIEAKRILKPDGALWVIGSYHNIYRVGAILQDLGFWILNDIVWRKSNPMPNFR 149
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETL+W S KA Y FNY A+K N+++QMRSDW++PIC+G+ERL+ + G
Sbjct: 150 GTRFTNAHETLLWCSQGEKA-KYHFNYRAMKTLNDELQMRSDWVLPICNGAERLK-EGGH 207
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPEALL R+L+S+T+ GD++LDPFFG+GT+GAVAK+L R +IG E + Y + A
Sbjct: 208 KVHPTQKPEALLYRVLLSTTERGDVVLDPFFGTGTTGAVAKRLGREWIGCEREGVYRNAA 267
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
KRI PL LT + R+ P+VAF LVE G I PG L + + +ATV ADG+
Sbjct: 268 LKRIEKELPLDESALTTMQAGRSAPKVAFGALVENGYIAPGTKLFDKKRRWTATVRADGS 327
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
L + GSIH +G ++ G+ +CNGW FW++E GE+ I+ R L
Sbjct: 328 LACEKQTGSIHGLGKELQGAPSCNGWTFWHYENGGEVKPIDAARQLY 374
>gi|209886095|ref|YP_002289952.1| modification methylase CcrMI [Oligotropha carboxidovorans OM5]
gi|209874291|gb|ACI94087.1| modification methylase CcrMI [Oligotropha carboxidovorans OM5]
Length = 374
Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats.
Identities = 220/350 (62%), Positives = 272/350 (77%), Gaps = 1/350 (0%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ ++ + KLPA SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AY
Sbjct: 22 RIVIGDCVAEMTKLPANSVDLVFADPPYNLQLKGELKRPDESHVDAVNDDWDKFSSFAAY 81
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLLACRR++KP T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFR
Sbjct: 82 DDFTRAWLLACRRIMKPTATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFR 141
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ +A YTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG
Sbjct: 142 GRRFTNAHETMIWAARD-EATKYTFNYDALKAANEDVQARSDWLIPLCTGEERLKGKDGR 200
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E + Y + A
Sbjct: 201 KIHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDRTYAEAA 260
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
KRIA+V+PL L R PRV F L+ERG+I PG L +++ +A V ADG
Sbjct: 261 EKRIAAVEPLPQATLAPFMTAREAPRVPFAELIERGMISPGAKLVDSKKKHAALVRADGA 320
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
++ G ++GSIHR+GA GSE CNGW+FW+ E L I+ LR VR+E
Sbjct: 321 IMLGDKVGSIHRMGALAQGSEACNGWSFWHVETKKGLRLIDELRAEVRRE 370
>gi|258542065|ref|YP_003187498.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
gi|256633143|dbj|BAH99118.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
gi|256636200|dbj|BAI02169.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-03]
gi|256639255|dbj|BAI05217.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-07]
gi|256642309|dbj|BAI08264.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-22]
gi|256645364|dbj|BAI11312.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-26]
gi|256648419|dbj|BAI14360.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-32]
gi|256651472|dbj|BAI17406.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654463|dbj|BAI20390.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-12]
Length = 367
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 201/356 (56%), Positives = 262/356 (73%), Gaps = 1/356 (0%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
S+ D+I++G + + LP+ SVD +FADPPYNLQL G+L RPD +LVD V D
Sbjct: 5 KSASMELPLDQILRGECVETMRSLPSGSVDCVFADPPYNLQLRGELRRPDDTLVDGVDDD 64
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
WDKFS E YD FTRAWL RRVL +GT+WVIGSYHNI+RIG +LQ+L FWILNDIVW
Sbjct: 65 WDKFSDLEEYDRFTRAWLAEARRVLHKDGTIWVIGSYHNIYRIGAILQDLGFWILNDIVW 124
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RKSNPMPNFRGRRF NAHETLIWA+ + Y FNY A+KA N+DVQMRSDW +P+C+G
Sbjct: 125 RKSNPMPNFRGRRFTNAHETLIWAARGQDS-RYRFNYQAMKALNDDVQMRSDWYLPLCTG 183
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ERLRN+ G KLHPTQKPE+LL R+L++ST D+ILDPF G+GT+ A+A++LRR FIGI
Sbjct: 184 NERLRNEHGLKLHPTQKPESLLHRVLLASTTVNDVILDPFSGTGTTAAMARRLRRHFIGI 243
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
E DY++ A R+A+ PL + KR PR+ F LVE+G+I G ++ + +
Sbjct: 244 ERHPDYVEAAMARVAAETPLEADAVQTTQDKREAPRIPFGSLVEQGVIAAGTVVCDKKRR 303
Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
+ ATV DGTL++GT+ GSIH++GA+++ + +CNGW FW+FE+ GEL ++ LR
Sbjct: 304 VHATVSPDGTLVNGTKRGSIHKLGAQLTNAPSCNGWTFWHFERAGELLQLDVLRQE 359
>gi|27377620|ref|NP_769149.1| adenine DNA methyltransferase [Bradyrhizobium japonicum USDA 110]
gi|27350765|dbj|BAC47774.1| adenine DNA methyltransferase [Bradyrhizobium japonicum USDA 110]
Length = 376
Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 268/352 (76%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+II G+ ++ + KL A SVDL+FADPPYNLQL G L RPD S VDAV D WDKF SF A
Sbjct: 22 HRIILGDCVAEMSKLQAGSVDLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFDSFSA 81
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD FTRAWLLA RR +KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNF
Sbjct: 82 YDDFTRAWLLAARRAMKPSATIWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKTNPMPNF 141
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RGRRF NAHET+IWA+ KAKGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+ DG
Sbjct: 142 RGRRFTNAHETMIWAARDEKAKGYTFNYEALKAANEDVQARSDWLIPLCTGEERLKGADG 201
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E + Y
Sbjct: 202 KKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDKTYAKA 261
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A RIA+V+PL L R PRVAF+ L+ERG+I PG L +A+ + A V ADG
Sbjct: 262 AEARIAAVEPLPEASLAPFMTAREAPRVAFSELIERGMIMPGTKLFDAKKKLGALVRADG 321
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
++ G ++GSIHR+GA G++ CNGW FW+ E L I+ LR +R +
Sbjct: 322 AIMFGDKVGSIHRIGAVAQGAQACNGWTFWHVETKKGLKLIDELRAEIRSGM 373
>gi|182677743|ref|YP_001831889.1| DNA methylase N-4/N-6 domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182633626|gb|ACB94400.1| DNA methylase N-4/N-6 domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 395
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 215/351 (61%), Positives = 268/351 (76%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D+I+ G+ + L +LPA+SVDL+FADPPYNLQL G++ RPD S VDAV D+WDKF SF
Sbjct: 39 LDQILLGDCVEKLNRLPAESVDLVFADPPYNLQLEGKILRPDQSQVDAVDDAWDKFDSFA 98
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT WL A RRV+K + TL+VIGSYHNIFR+GT+LQ+ FWILNDI+WRKSNPMPN
Sbjct: 99 DYDRFTHEWLAAVRRVMKRHATLFVIGSYHNIFRVGTILQDQGFWILNDIIWRKSNPMPN 158
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHET+IWA+ S K YTF+YDALKA NED Q+RSDWL+PICSG ERL+N+
Sbjct: 159 FRGRRFTNAHETMIWAAKSADVKNYTFHYDALKAGNEDHQVRSDWLLPICSGGERLKNEA 218
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPE LLSRIL+++T PGD++LDPFFG+GT+GAVAKKL RSFIGIE + Y
Sbjct: 219 GRKTHPTQKPENLLSRILLATTNPGDVVLDPFFGTGTTGAVAKKLGRSFIGIEREAGYAA 278
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RIA++ PL + + KRTEPR+ F L+E GL+ G+ LT+ +G A V AD
Sbjct: 279 AAKARIAAIDPLPSEAIASFPNKRTEPRIPFMTLIESGLLAAGETLTDEKGRHEAVVRAD 338
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
GTL G +GSIH++GA V G CNGW FW+F++ G+ H ++ LRI +R+
Sbjct: 339 GTLAVGPIIGSIHKIGALVQGLPACNGWTFWHFQRDGQKHPLDRLRIQLRE 389
>gi|254504291|ref|ZP_05116442.1| DNA methylase domain protein [Labrenzia alexandrii DFL-11]
gi|222440362|gb|EEE47041.1| DNA methylase domain protein [Labrenzia alexandrii DFL-11]
Length = 346
Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 214/345 (62%), Positives = 272/345 (78%), Gaps = 1/345 (0%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
++ LEKLP++SVDL+FADPPYNLQL G L+RPD S VDA D WD+F SFEAYDAFTRAW
Sbjct: 1 MAALEKLPSRSVDLVFADPPYNLQLGGDLHRPDQSKVDACDDHWDQFESFEAYDAFTRAW 60
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
LLA RRV+K +G+L+VIGSYHNIFR+G +LQ+L FWI+NDIVW KSNPMPNFRG+RF NA
Sbjct: 61 LLAARRVMKTDGSLYVIGSYHNIFRVGAILQDLGFWIMNDIVWLKSNPMPNFRGKRFTNA 120
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
HET+IWA+ S AK TFNYDALK NED+QMRSDW +P+C+G+ERL+ KDG+K+HPTQK
Sbjct: 121 HETMIWATKSKDAKP-TFNYDALKTFNEDLQMRSDWHLPLCTGAERLKGKDGQKVHPTQK 179
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PEALL R+L +S+KPGD++LDPFFG+GT+GAVA+KL R+++G+E +QDYID AT RIA++
Sbjct: 180 PEALLYRVLTASSKPGDVVLDPFFGTGTTGAVARKLGRNYVGVEREQDYIDAATARIAAI 239
Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
QP L + GKR + R+ F L+E G+++PG LT ++G A V ADG+L SG
Sbjct: 240 QPGDEKALEMQQGKRAQKRIPFGTLLENGVLEPGTELTCSKGKHLAIVRADGSLKSGDHT 299
Query: 329 GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GSIH+VGA V G E CNGW FW+ ++ + I+ LR +R L
Sbjct: 300 GSIHKVGALVQGQEACNGWTFWHTKEGSKKSPIDELRKEIRSRLQ 344
>gi|86748198|ref|YP_484694.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris HaA2]
gi|86571226|gb|ABD05783.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris HaA2]
Length = 377
Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 219/353 (62%), Positives = 274/353 (77%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++II G+ ++ + KLPAKSVDL+FADPPYNLQL G L RPD S VDAV D WDKFSSF
Sbjct: 22 ENRIIVGDCVAEMSKLPAKSVDLVFADPPYNLQLKGALKRPDESQVDAVDDDWDKFSSFA 81
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTRAWLLA RR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPN
Sbjct: 82 AYDDFTRAWLLAARRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPN 141
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHET+IWA+ AKGYTFNYDALKA+NEDVQ RSDWLIP+C+G ERL+ KD
Sbjct: 142 FRGRRFTNAHETMIWAARDENAKGYTFNYDALKASNEDVQARSDWLIPLCTGDERLKGKD 201
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IG E + Y D
Sbjct: 202 GKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNYIGFERDRTYAD 261
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RI +V+PL L R PRVAF+ L+ERG+I PG L +++ A V AD
Sbjct: 262 AARARIDAVEPLPEDTLKPFLTARDAPRVAFSELIERGMISPGAKLVDSKKRHGALVRAD 321
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
G ++ G ++GSIHR+GA GSE CNGW FW+ E L I+ LR VR +
Sbjct: 322 GAIMLGDKVGSIHRIGAMAQGSEACNGWTFWHVETTKGLRLIDELRAEVRSAM 374
>gi|294085234|ref|YP_003551994.1| DNA methylase N-4/N-6 [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664809|gb|ADE39910.1| DNA methylase N-4/N-6 [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 363
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 194/356 (54%), Positives = 267/356 (75%), Gaps = 3/356 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ +++G+ + L+ L SVDL+FADPPYNLQL+ L RPD S V +V DSWD+F SF
Sbjct: 3 KNIVLQGDCVETLKTLAKNSVDLVFADPPYNLQLSELLVRPDQSSVVSVDDSWDQFDSFA 62
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT AW+ RRVLKPNG +WVIGSYHNIFR+G ++Q+L FW+LND++WRK+NPMPN
Sbjct: 63 AYDEFTLAWMREVRRVLKPNGAIWVIGSYHNIFRVGKIMQDLGFWVLNDVIWRKTNPMPN 122
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHET+IWA+ S KA +TFNY+A+KA N+DVQMRSDW +P+C+G ERL+ ++
Sbjct: 123 FRGRRFTNAHETMIWAAKSQKA-KHTFNYEAMKALNDDVQMRSDWELPLCTGHERLK-EN 180
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G++ HPTQKPE+LL+R++++STK D+ILDPFFG+GT+GAVA++L R+FIGIE DY+
Sbjct: 181 GKRAHPTQKPESLLARVILASTKRDDVILDPFFGTGTTGAVARRLNRNFIGIEQNPDYVK 240
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A RI V P+ + +L KR P++ F L+ERG++QPG L +A+ SA V AD
Sbjct: 241 LARDRIDQVTPIASPDLLASEQKRALPKIPFGTLIERGILQPGDRLFDAKKRFSAQVRAD 300
Query: 320 GTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
G+L++ ++ GSIH +GA++ +CNGW FW+ E+ G+ I+ R +R N
Sbjct: 301 GSLVTDSKESGSIHSLGAQLQSLPSCNGWIFWHVERDGKPVLIDRFREDIRASNQN 356
>gi|91975680|ref|YP_568339.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB5]
gi|91682136|gb|ABE38438.1| DNA adenine methylase CcrM [Rhodopseudomonas palustris BisB5]
Length = 377
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 216/353 (61%), Positives = 275/353 (77%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++II G+ ++ + KLPA+SVDL+FADPPYNLQL G+L RPD S VDAV + WDKFSSF
Sbjct: 22 ENRIIVGDCVAEMSKLPARSVDLVFADPPYNLQLKGELKRPDESHVDAVDNDWDKFSSFA 81
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTRAWLLA RR++KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPN
Sbjct: 82 AYDDFTRAWLLAARRIMKPSATIWVIGSYHNIFRVGAIMQDLGFWLLNDIVWRKTNPMPN 141
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHET+IWA+ AKGYTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ D
Sbjct: 142 FRGRRFTNAHETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGEERLKGSD 201
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+LRR++IG E +DY
Sbjct: 202 GKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNYIGFERDRDYAT 261
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RIA+++PL L R+ PRVAF L+ERG+I PG L +++ A V AD
Sbjct: 262 AAEARIAAIEPLPEATLAPFMTARSAPRVAFAELIERGIISPGTKLVDSKKRHGALVRAD 321
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
G ++ G ++GSIHR+GA GSE CNGW FW+ E L I+ LR +R +
Sbjct: 322 GAIMLGDKVGSIHRIGAVAQGSEACNGWTFWHVETSKGLRLIDELRAEIRSAM 374
>gi|103486455|ref|YP_616016.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
gi|98976532|gb|ABF52683.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
Length = 379
Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats.
Identities = 203/348 (58%), Positives = 250/348 (71%), Gaps = 3/348 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I++G+ ++++ LPA SVD+IFADPPYNLQL G L RPD S VDAV D WDKF S
Sbjct: 26 LDSILQGDCVAMMRGLPAASVDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDKFDSLA 85
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT AWL RR+LKP G++WVIGSYHNIFR+G LQ+ +WILNDIVWRK+NPMPN
Sbjct: 86 TYDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRVGAALQDQGYWILNDIVWRKANPMPN 145
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHETLIWAS KA YTFNY A+K N+++QMRSDWLIPIC G ERL+ K
Sbjct: 146 FKGTRFTNAHETLIWASMGEKA-RYTFNYRAMKTLNDELQMRSDWLIPICGGPERLK-KG 203
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K+HPTQKPEALL RIL++ + PGD+ILDPFFG+GT+GAVAK+L R +IGIE + DYI
Sbjct: 204 GHKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGTTGAVAKRLGRHYIGIEREDDYIA 263
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A +RI PL + + + RVAF LVE GLI PG +LT+A+ A V D
Sbjct: 264 AAKERIELALPLDESAVKTMMAPKAATRVAFGTLVECGLIAPGTVLTDAKRRWKAKVRVD 323
Query: 320 GTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
G+L + GSIH+VGA V G+ +CNGW FW+ + EL I+ +R
Sbjct: 324 GSLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTGQELRVIDAVRQ 371
>gi|329114180|ref|ZP_08242942.1| Modification methylase SmeI [Acetobacter pomorum DM001]
gi|326696256|gb|EGE47935.1| Modification methylase SmeI [Acetobacter pomorum DM001]
Length = 367
Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats.
Identities = 202/356 (56%), Positives = 262/356 (73%), Gaps = 1/356 (0%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
S+ D+I++G + + LP+ SVD +FADPPYNLQL G+L RPD +LVD V D
Sbjct: 5 KSASMELPIDQILRGECVETMRSLPSGSVDCVFADPPYNLQLRGELRRPDDTLVDGVDDD 64
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
WDKFS E YD FTRAWL RRVL +GT+WVIGSYHNI+RIG +LQ+L FWILNDIVW
Sbjct: 65 WDKFSDLEEYDRFTRAWLAEARRVLHKDGTIWVIGSYHNIYRIGAILQDLGFWILNDIVW 124
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RKSNPMPNFRGRRF NAHETLIWA+ + Y FNY A+KA N+DVQMRSDW +P+C+G
Sbjct: 125 RKSNPMPNFRGRRFTNAHETLIWAARGQDS-RYRFNYQAMKALNDDVQMRSDWYLPLCTG 183
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ERLRN+ G KLHPTQKPE+LL R+L++ST D+ILDPF G+GT+ A+A++LRR FIGI
Sbjct: 184 NERLRNEHGLKLHPTQKPESLLHRVLLASTTVNDVILDPFSGTGTTAAMARRLRRHFIGI 243
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
E DY++ A R+A+ PL + KR PR+ F LVE+G+I G ++ + +
Sbjct: 244 ERHPDYVEAAMARVAAETPLEADAVQTTQDKREAPRIPFGSLVEQGVIAAGTVVCDKKRR 303
Query: 312 ISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
+ ATV DGTL++GT+ GSIH++GA+++ + +CNGW FWYFE+ GEL ++ LR
Sbjct: 304 VHATVSPDGTLVNGTKRGSIHKLGAQLTNAPSCNGWTFWYFERAGELLQLDVLRQE 359
>gi|90425838|ref|YP_534208.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
gi|90107852|gb|ABD89889.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
Length = 377
Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats.
Identities = 215/351 (61%), Positives = 270/351 (76%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ ++ + K+ A SVDL+FADPPYNLQL G L RPD S VDAVTD WDKF SF AY
Sbjct: 24 QIVIGDCVAEMSKMAAGSVDLVFADPPYNLQLKGDLKRPDESHVDAVTDDWDKFDSFAAY 83
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLLACRR++KP TLWVIGSYHNIFR+GT++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 84 DNFTRAWLLACRRIMKPTATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKTNPMPNFR 143
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ +KGYTFNY+ALKAANEDVQ RSDWLIP+C+G ERL+ DG+
Sbjct: 144 GRRFTNAHETMIWAARDENSKGYTFNYEALKAANEDVQARSDWLIPLCTGEERLKGADGK 203
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS+KPGD++LDPF G+GT+GAVAK+L R +IG E DY A
Sbjct: 204 KIHPTQKPEGLLARVLLSSSKPGDLVLDPFNGTGTTGAVAKRLGRHYIGFERDHDYAAAA 263
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
RI +++PL + L R+ PRVAF+ L+ERG+I PG L +++ A V ADG
Sbjct: 264 RARIDAIEPLPDATLAPFMTARSAPRVAFSELIERGIISPGTKLVDSKKRHGALVRADGA 323
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
++ G ++GSIHR+GA GSE CNGW FW+ E L I+ LR +R E+
Sbjct: 324 IMLGDKVGSIHRMGAVAQGSEACNGWTFWHVETHKGLRLIDELRAEIRSEM 374
>gi|300024384|ref|YP_003756995.1| DNA methylase N-4/N-6 domain protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299526205|gb|ADJ24674.1| DNA methylase N-4/N-6 domain protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 375
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 200/350 (57%), Positives = 259/350 (74%), Gaps = 1/350 (0%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ I+ L+K+ SVDL+FADPPYNLQL G L RP+++ VD V D+WDKF F Y
Sbjct: 14 RILVGDCINELKKIATASVDLVFADPPYNLQLAGDLLRPNNTKVDGVDDAWDKFQDFAEY 73
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D+F RAWL CRRVLKP+G +WVIGSYHNIFR+G +Q+L FWI ND++WRK NPMPNFR
Sbjct: 74 DSFCRAWLKECRRVLKPDGAIWVIGSYHNIFRLGVAIQDLGFWIQNDVIWRKVNPMPNFR 133
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G+RF NAHET+IWA K++ TFNY++LKA+N+D+QMRSDWL PICSG ERL++ G
Sbjct: 134 GKRFTNAHETMIWAGRDRKSRV-TFNYESLKASNDDLQMRSDWLFPICSGPERLKDDGGR 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL RI+++STKPGD +LDPFFG+GT+GAVAK+L R FIGIE DY A
Sbjct: 193 KAHPTQKPEALLHRIMIASTKPGDTVLDPFFGTGTTGAVAKRLGRKFIGIERDTDYARAA 252
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
+RIA V+PL + + KR+EPR+ F ++E G+++PGQ L + + A V ADGT
Sbjct: 253 DERIAKVRPLDLDAIEAIPSKRSEPRIPFGQILELGILEPGQKLFGPRREVRAEVRADGT 312
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
L + SIHR+GA V G CNGW +W+FE G+L I+ LR +++
Sbjct: 313 LACAGQQASIHRLGAMVQGKAACNGWTYWHFEAEGKLRPIDVLRGEAKRQ 362
>gi|306842226|ref|ZP_07474890.1| Modification methylase HinfI [Brucella sp. BO2]
gi|306287668|gb|EFM59112.1| Modification methylase HinfI [Brucella sp. BO2]
Length = 338
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 230/332 (69%), Positives = 283/332 (85%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
D+IFADPPYNLQL G L+RPD S+V AV D WD+F SF+AYDAFTRAWLLACRRVLKPNG
Sbjct: 2 DVIFADPPYNLQLGGDLHRPDQSMVSAVDDHWDQFESFQAYDAFTRAWLLACRRVLKPNG 61
Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
T+WVIGSYHNIFR+GT LQ+L FW+LNDIVWRK+NPMPNFRGRRFQNAHETLIWAS K
Sbjct: 62 TIWVIGSYHNIFRVGTQLQDLGFWLLNDIVWRKTNPMPNFRGRRFQNAHETLIWASRDQK 121
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
KGYTFNY+A+KAAN+DVQMRSDWL PIC+GSERL++++G+K+HPTQKPEALL+RI+++S
Sbjct: 122 GKGYTFNYEAMKAANDDVQMRSDWLFPICTGSERLKDENGDKVHPTQKPEALLARIMMAS 181
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
+KPGD+ILDPFFGSGT+GAVAK+L R F+GIE +Q YID AT RI +V+PLG ELTV+T
Sbjct: 182 SKPGDVILDPFFGSGTTGAVAKRLGRHFVGIEREQPYIDAATARINAVEPLGKAELTVMT 241
Query: 281 GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
GKR EPRVAF ++E GL++PG +L + + +A V ADGTL + E GSIHR+GA+V G
Sbjct: 242 GKRAEPRVAFTSVMEAGLLRPGTVLCDERRRFAAIVRADGTLTANGEAGSIHRIGARVQG 301
Query: 341 SETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
+ CNGW FW+FE+ G L I+ LR ++R+++
Sbjct: 302 FDACNGWTFWHFEENGVLKPIDALRKIIREQM 333
>gi|92118691|ref|YP_578420.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
gi|91801585|gb|ABE63960.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
Length = 376
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 215/351 (61%), Positives = 271/351 (77%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+ ++ + KLP+ S DL+FADPPYNLQL G L RPD S VDAV D WDKFSSF AY
Sbjct: 23 RIIVGDCVAAMSKLPSGSADLVFADPPYNLQLKGDLKRPDESHVDAVNDDWDKFSSFAAY 82
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLLACRRV+KP T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83 DDFTRAWLLACRRVMKPTATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFR 142
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ AKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G+ERL++KDG
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKASNEDVQARSDWLIPLCTGNERLKDKDGR 202
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS++PGD+I+DPF G+GT+GAVAK+L R++IG E Q Y A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSRPGDLIIDPFNGTGTTGAVAKRLGRNYIGFERDQTYAAAA 262
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
KRIA+++PL + R PRVAF+ L+ERG+I PG L +A+ A V ADG
Sbjct: 263 EKRIAAIEPLPEATIAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
++ G ++GSIHR+GA G+ CNGW FW+ E L I+ LR +R E+
Sbjct: 323 IMLGDKVGSIHRIGAVAQGAGACNGWTFWHIETSKGLRLIDELRAEIRSEM 373
>gi|71082817|ref|YP_265536.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
HTCC1062]
gi|71061930|gb|AAZ20933.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
HTCC1062]
Length = 356
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 190/354 (53%), Positives = 255/354 (72%), Gaps = 2/354 (0%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+K+KII G+S+ L+K+P+++ DL+FADPPYNLQL L RPD S V+AV D WD F
Sbjct: 3 NNFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNSLTRPDRSKVNAVNDKWDHFE 62
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
SF+ YD FT AWL C+R+LK +G +WVIGSYHNIFR+GT +QNL FWILND++W K+NP
Sbjct: 63 SFKKYDEFTVAWLSECKRILKKDGAIWVIGSYHNIFRVGTAIQNLGFWILNDVIWNKNNP 122
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
MPNFRG RF NAHETLIWAS S K+ YTFNY +LK N+D+QMRSDW +PIC+G+ERL+
Sbjct: 123 MPNFRGTRFTNAHETLIWASKSEKS-KYTFNYQSLKCLNDDLQMRSDWNLPICNGAERLK 181
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K+G+K+H TQKPE+LL R+L++S+ GD+ILDPF GSGT+ VAKKL R + GIE ++
Sbjct: 182 -KNGKKVHSTQKPESLLHRVLLASSNKGDMILDPFLGSGTTATVAKKLGRKYYGIEKEKV 240
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
Y A +R+ + +PL + L L R++PR+ F LVE G+I+PG + + + I A +
Sbjct: 241 YFKAAEERLKNTKPLEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTSIFDQKKKIVAKI 300
Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
ADG++ GSIH+V A + GSE+CNGW +W+ G I+ LR +
Sbjct: 301 MADGSIKHNQAEGSIHKVAATILGSESCNGWTYWHCTVNGVSVPIDNLRQRLIS 354
>gi|91762760|ref|ZP_01264725.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
HTCC1002]
gi|91718562|gb|EAS85212.1| site-specific DNA methyltransferase [Candidatus Pelagibacter ubique
HTCC1002]
Length = 356
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 189/354 (53%), Positives = 254/354 (71%), Gaps = 2/354 (0%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+K+KII G+S+ L+K+P+++ DL+FADPPYNLQL L RPD S V AV D WD+F
Sbjct: 3 NNFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNSLTRPDRSKVSAVNDKWDQFE 62
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
SF+ YD FT AWL CRR+LK +G +WVIGSYHNIFR+GT +QNL FWILND++W K+NP
Sbjct: 63 SFKKYDDFTVAWLSECRRILKKDGAIWVIGSYHNIFRVGTAIQNLGFWILNDVIWNKNNP 122
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
MPNFRG RF NAHETLIWAS S K+ YTFNY +LK N+D+QMRS+W +PIC+G+ERL+
Sbjct: 123 MPNFRGTRFTNAHETLIWASKSEKS-KYTFNYQSLKCLNDDLQMRSNWNLPICNGAERLK 181
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K+G+K+H TQKPE+LL R+L++S+ D+ILDPF GSGT+ VAKKL R + GIE ++
Sbjct: 182 -KNGKKVHSTQKPESLLHRVLLASSNKDDLILDPFLGSGTTATVAKKLGRKYYGIEKEKT 240
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
Y A +R+ + +PL + L L R++PR+ F LVE G+I+PG + + + I A +
Sbjct: 241 YFKAAEERLKNTKPLEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTSIFDQKKKIVAKI 300
Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
ADG++ GSIH+V A + GSE+CNGW +W+ G I+ LR +
Sbjct: 301 MADGSIKHNQAEGSIHKVAATILGSESCNGWTYWHCTVNGVSVPIDNLRQRLIS 354
>gi|158422077|ref|YP_001523369.1| putative adenine DNA methyltransferase [Azorhizobium caulinodans
ORS 571]
gi|158328966|dbj|BAF86451.1| putative adenine DNA methyltransferase [Azorhizobium caulinodans
ORS 571]
Length = 395
Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats.
Identities = 216/356 (60%), Positives = 272/356 (76%), Gaps = 4/356 (1%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I+ G+ + L LP SVD++FADPPYNLQL G+L RPD S VDAV D+WD+F SFEA
Sbjct: 34 DRILIGDCVEQLASLPPHSVDMVFADPPYNLQLQGELKRPDDSRVDAVDDAWDQFESFEA 93
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAFTRAWLLA +RV+KPN T+WVIGSYHNIFR+G ++Q+L FWILND+VWRKSNPMPNF
Sbjct: 94 YDAFTRAWLLAVKRVMKPNATIWVIGSYHNIFRVGALMQDLGFWILNDVVWRKSNPMPNF 153
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RGRRF NAHET+IWA+ P AKGY FNY+ALK NEDVQ+RSDWL+PIC+G ERL++ G
Sbjct: 154 RGRRFTNAHETMIWAARDPGAKGYQFNYEALKGGNEDVQVRSDWLLPICTGGERLKDAQG 213
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLHPTQKPEALL+R+++S++KPGD++LDPF GSGTS AVAK+LRR F+G+E + Y
Sbjct: 214 RKLHPTQKPEALLARVMLSASKPGDVVLDPFLGSGTSAAVAKRLRRHFVGVERDETYAAA 273
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A RI +++PL L R PRVAF+ LV+ GL+ PG LT+A+G++ A V ADG
Sbjct: 274 AAARIDAIEPLPEAALVAPPSAREAPRVAFSALVDSGLVTPGLELTDAKGHVRAVVRADG 333
Query: 321 TLISGT----ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
T+ +GSIHR+GA G+E CNGW FW+ E+ G H I+ LR +R E+
Sbjct: 334 TIALVNAATLAVGSIHRMGALAQGAEACNGWTFWHVEQEGRRHPIDVLRARLRAEM 389
>gi|75676787|ref|YP_319208.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
gi|74421657|gb|ABA05856.1| DNA adenine methylase CcrM [Nitrobacter winogradskyi Nb-255]
Length = 376
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 215/353 (60%), Positives = 271/353 (76%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+ ++ + KL A S DLIFADPPYNLQL G L RPD S VDAV WDKFSSF AY
Sbjct: 23 RIIIGDCVAGMSKLQAGSADLIFADPPYNLQLKGDLKRPDESHVDAVNSDWDKFSSFSAY 82
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLLACRRV+KP+ T+WVIGSYHNIFR+G ++Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83 DEFTRAWLLACRRVMKPSATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFR 142
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G+ERL+++DG
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGNERLKDEDGR 202
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R++IG E + Y A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRNYIGFERDRTYAAAA 262
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
KRIA+V+PL L R PRVAF+ L+ERG+I PG L +A+ A V ADG
Sbjct: 263 EKRIAAVEPLPEATLAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
++ G ++GSIHR+GA G+ CNGW FW+ E L I+ LR +R ++ +
Sbjct: 323 IMLGDKVGSIHRIGAVAQGAGACNGWTFWHIETSKGLKLIDELRAEIRSQMAS 375
>gi|85714254|ref|ZP_01045242.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
gi|85698701|gb|EAQ36570.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
Length = 376
Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats.
Identities = 220/351 (62%), Positives = 271/351 (77%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+ ++ + KLPA S DLIFADPPYNLQL G+L RPD S VDAV WDKFSSF AY
Sbjct: 23 RIIIGDCVAGMSKLPAGSADLIFADPPYNLQLKGELKRPDESHVDAVNSEWDKFSSFSAY 82
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLLACRRV+KP+ T+WVIGSYHNIFR+G M+Q+L FW+LNDIVWRK+NPMPNFR
Sbjct: 83 DDFTRAWLLACRRVMKPSATIWVIGSYHNIFRVGAMMQDLGFWVLNDIVWRKTNPMPNFR 142
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ AKGYTFNY+ALKAANEDVQ RSDWLIP+C+G+ERL+ KDG
Sbjct: 143 GRRFTNAHETMIWAARDENAKGYTFNYEALKAANEDVQARSDWLIPLCTGNERLKGKDGR 202
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E Q Y A
Sbjct: 203 KIHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDQAYAAAA 262
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
KRIA+V+PL L R PRVAF+ L+ERG+I PG L +A+ A V ADG
Sbjct: 263 EKRIAAVEPLPEATLAPFMTAREAPRVAFSELIERGMISPGAKLVDAKKRHGALVRADGA 322
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
++ G ++GSIHR+GA G+ CNGW FW+ E L I+ LR +R ++
Sbjct: 323 IMLGDKVGSIHRIGAVAQGASACNGWTFWHIETSKGLRLIDELRAEIRSQM 373
>gi|114328523|ref|YP_745680.1| adenine-specific methyltransferase [Granulibacter bethesdensis
CGDNIH1]
gi|114316697|gb|ABI62757.1| adenine-specific methyltransferase [Granulibacter bethesdensis
CGDNIH1]
Length = 385
Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats.
Identities = 202/345 (58%), Positives = 260/345 (75%), Gaps = 1/345 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+++ G+ + V++ LP SVD IFADPPYNLQL G+L RPD S+VD V D WD+F+ + A
Sbjct: 19 DQVLLGDCVQVMQMLPTGSVDCIFADPPYNLQLRGELRRPDESIVDGVDDDWDRFTDYAA 78
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAF+RAWL CRR+L+ +GT+WVIG+YHNIFR+GT+LQ+L FWILND+VWRK+NPMPNF
Sbjct: 79 YDAFSRAWLTECRRLLRKDGTIWVIGAYHNIFRLGTILQDLGFWILNDVVWRKANPMPNF 138
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RGRRF NAHETLIWA+ + + FNY A+K N+DVQMRSDW +P+C+GSER+RN G
Sbjct: 139 RGRRFTNAHETLIWAARGQDS-RHRFNYQAMKTLNDDVQMRSDWFLPLCTGSERMRNDHG 197
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLHPTQKPE+LL R+L+SST PGD++LDPF G+GTS AVAK+L+RSFIGIE Y +
Sbjct: 198 LKLHPTQKPESLLYRVLLSSTVPGDVVLDPFLGTGTSAAVAKRLQRSFIGIERHPAYAEA 257
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A R+ SV+P L ++ +R + RV F LVE+GL+ G IL + +SA V ADG
Sbjct: 258 AIGRLRSVEPAPLDNLNIMPSRREQKRVPFGSLVEQGLLPMGSILMDRLRRVSALVQADG 317
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
++ SG GSIH+VGA V + +CNGW FW+FE GE I+ LR
Sbjct: 318 SIASGAHRGSIHQVGAAVQNAPSCNGWTFWFFELRGEWVPIDVLR 362
>gi|217977761|ref|YP_002361908.1| DNA methylase N-4/N-6 domain protein [Methylocella silvestris BL2]
gi|217503137|gb|ACK50546.1| DNA methylase N-4/N-6 domain protein [Methylocella silvestris BL2]
Length = 379
Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats.
Identities = 208/353 (58%), Positives = 259/353 (73%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I+ G+ + L +LPA SVD +FADPPYNLQL L RPD SLVDAV D WDKF SF
Sbjct: 22 LNEILIGDCLEQLARLPAASVDAVFADPPYNLQLESTLSRPDQSLVDAVNDDWDKFDSFS 81
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD+F+R+WL A RRV+KP TL+VIGSYHNIFR+G+ LQ+ FWILNDIVWRK+NPMPN
Sbjct: 82 HYDSFSRSWLKAVRRVMKPEATLFVIGSYHNIFRVGSTLQDEGFWILNDIVWRKANPMPN 141
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ AK Y FNY+ LKA NED Q+RSDWL PIC+G+ERL+ D
Sbjct: 142 FRGRRFTNAHETLIWAAKDSAAKNYRFNYELLKAGNEDCQLRSDWLFPICTGAERLKGSD 201
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPEALL+RIL+++T PGD++LDPFFGSGT+GA AK+L R F+GIE + Y
Sbjct: 202 GRKTHPTQKPEALLARILIAATNPGDVVLDPFFGSGTTGAAAKRLGRHFVGIERDKTYAA 261
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RI +V+ L + + KRTEPRVAF+ +VE GLI PG L + + ATV AD
Sbjct: 262 AARARIDAVETLPEAAIALTPSKRTEPRVAFSAIVEAGLIAPGDSLVDDKQRHRATVRAD 321
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
G + G +GSIH++GA G CNGW +W+F + G+L I+ LR + R +L
Sbjct: 322 GAITLGPVVGSIHKIGALAQGLPACNGWTYWHFAQGGKLQPIDALRTVARGKL 374
>gi|241761782|ref|ZP_04759868.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241373696|gb|EER63256.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 382
Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats.
Identities = 202/372 (54%), Positives = 264/372 (70%), Gaps = 2/372 (0%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS+++ E +S + I+ GN I +L+ LP SVDLIFADPPYNLQL+G+L+RP
Sbjct: 10 MSEEDIGGDTELSDSPTLPLNSILAGNCIEILKTLPDNSVDLIFADPPYNLQLSGELFRP 69
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ S VDAV ++WDKF +F AYD FT WL RVLK +GT+WVIGSYHNIFR+GT LQ+
Sbjct: 70 EGSRVDAVNNAWDKFDTFAAYDHFTCLWLKEAHRVLKEDGTIWVIGSYHNIFRVGTALQD 129
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
FWILNDI+WRKSNPMPNF+GRRF NAHETLIWAS S K+ Y FNY +LK N+D+QM
Sbjct: 130 QGFWILNDIIWRKSNPMPNFKGRRFTNAHETLIWASKSDKS-RYVFNYASLKTFNDDLQM 188
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL+PICSG+ERL+ ++G+K+HPTQKPEALL RI+++S++P D+ILDPFFG+GT+G +
Sbjct: 189 RSDWLLPICSGNERLKGENGQKIHPTQKPEALLYRIILASSRPDDVILDPFFGTGTTGVI 248
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
A+ LRR +IGIE YI A RI + + + KR +PRV F L+E G I+
Sbjct: 249 ARHLRRHWIGIEQDPTYIKAAQARIDKAEVFDEALMGQASNKRKQPRVTFGCLMENGFIR 308
Query: 301 PGQILTNAQGNISATVCADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
PG IL +++ A V DG L S GSIH++GA++ + +CNGW FW+FE+ L
Sbjct: 309 PGHILYDSRRRFKAVVNVDGALQSADGRSGSIHKLGAQLQQAVSCNGWIFWHFEENNILL 368
Query: 360 SINTLRILVRKE 371
++ LR E
Sbjct: 369 PLDILRQRYLAE 380
>gi|254456346|ref|ZP_05069775.1| site-specific DNA methyltransferase [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083348|gb|EDZ60774.1| site-specific DNA methyltransferase [Candidatus Pelagibacter sp.
HTCC7211]
Length = 356
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 191/353 (54%), Positives = 259/353 (73%), Gaps = 2/353 (0%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++K+KII G+S+ L+K+P+++ DL+FADPPYNLQL +L RPD S V AV D WD+F +
Sbjct: 4 DFKNKIINGDSLEELKKIPSETFDLVFADPPYNLQLKNKLTRPDRSKVSAVDDKWDQFEN 63
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F+ YD FT AWL C+R+LK NG +WVIGSYHNIFR+GT +QNL FWILND++W K+NPM
Sbjct: 64 FKKYDEFTYAWLTECKRILKKNGAIWVIGSYHNIFRVGTTIQNLGFWILNDVIWNKNNPM 123
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PNFRG RF NAHETLIWAS S K+ YTFNY +LK N+D+QMRS+W +PIC+G+ERL+
Sbjct: 124 PNFRGTRFTNAHETLIWASKSEKS-KYTFNYQSLKCLNDDLQMRSNWNLPICNGTERLK- 181
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K+G+K+H TQKPEALL RIL++S+ D+ILDPF GSGT+ VAKKL R+F GIE ++ Y
Sbjct: 182 KNGKKVHSTQKPEALLHRILLASSNKDDMILDPFLGSGTTATVAKKLGRNFYGIEKEKTY 241
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
A KRI + +P + L L R++PR+ F LVE G+I+PG + + + I+A +
Sbjct: 242 FKAAEKRIKNAKPFEDNFLDTLKNNRSKPRIPFGSLVELGIIKPGTNIFDNKKKITARIM 301
Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
ADG++ GSIH+V A + G+E+CNGW +W+ + G + I+ LR +
Sbjct: 302 ADGSIKHNQAEGSIHKVAATILGAESCNGWTYWHCDINGRTYPIDYLRQRLIS 354
>gi|288962308|ref|YP_003452603.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
gi|288914574|dbj|BAI76059.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
Length = 360
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 203/358 (56%), Positives = 267/358 (74%), Gaps = 5/358 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++I+ G+ I+++ LP SVDL+FADPPYNLQL G+L RP+H+ V V D WDKF FE
Sbjct: 4 ENRILVGDCIALMNDLPPASVDLVFADPPYNLQLGGELLRPNHTRVAGVDDEWDKFDDFE 63
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR W+ A RR+LKP G+LWVIGSYHNIFR+G LQNL FWILNDIVWRK+NPMPN
Sbjct: 64 AYDRFTRDWMTAARRILKPEGSLWVIGSYHNIFRVGATLQNLGFWILNDIVWRKTNPMPN 123
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG RF NAHET+IWA+ K Y FNYDA+K NED+QMRSDWL+PICSG ERLR+++
Sbjct: 124 FRGTRFANAHETMIWAA-LDKDARYRFNYDAMKNLNEDLQMRSDWLLPICSGGERLRDEE 182
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE+LL R+++SS++PGD++LDPFFG+GT+GAVAK+L R +IG+E Y+
Sbjct: 183 GKKTHPTQKPESLLYRVILSSSRPGDVVLDPFFGTGTTGAVAKRLGRKWIGLERDDTYVK 242
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RI +V+ + + KR+ PR+ F +VERGL++PG L + + ++A V AD
Sbjct: 243 AAQARIDAVEEAPDTAILDTPPKRSAPRIPFGWVVERGLLRPGSTLFDQRRRVAARVRAD 302
Query: 320 GTLIS----GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTLI G GSIH+VGA ++G CNGW FW++E+ +L I+ LR +R E++
Sbjct: 303 GTLIGSGPRGDHRGSIHQVGAAMAGLPACNGWTFWHYEEGEDLRPIDVLRERIRSEMH 360
>gi|260752543|ref|YP_003225436.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283856387|ref|YP_162740.2| DNA methylase N-4/N-6 domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|163881967|gb|ABY48039.1| cell cycle regulating DNA methyltransferase [Zymomonas mobilis
subsp. mobilis]
gi|258551906|gb|ACV74852.1| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283775386|gb|AAV89629.2| DNA methylase N-4/N-6 domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 382
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 203/372 (54%), Positives = 265/372 (71%), Gaps = 2/372 (0%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
MS+++ E +S + I+ GN I +L+ LP SVDLIFADPPYNLQL+G+L+RP
Sbjct: 10 MSEEDIGGDTELSDSPTLPLNSILAGNCIEILKTLPDNSVDLIFADPPYNLQLSGELFRP 69
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ S VDAV ++WDKF +F AYD FTR WL RVLK +GT+WVIGSYHNIFR+GT LQ+
Sbjct: 70 EGSRVDAVNNAWDKFDTFAAYDHFTRLWLKEAHRVLKEDGTIWVIGSYHNIFRVGTALQD 129
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
FWILNDI+WRKSNPMPNF+GRRF NAHETLIWAS S K+ Y FNY +LK N+D+QM
Sbjct: 130 QGFWILNDIIWRKSNPMPNFKGRRFTNAHETLIWASKSDKS-RYVFNYASLKTFNDDLQM 188
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RSDWL+PICSG+ERL+ ++G+K+HPTQKPEALL RI+++S++P D+ILDPFFG+GT+G +
Sbjct: 189 RSDWLLPICSGNERLKGENGQKIHPTQKPEALLYRIILASSRPDDVILDPFFGTGTTGVI 248
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
A+ LRR +IGIE YI A RI + + + KR +PRV F L+E G I+
Sbjct: 249 ARHLRRHWIGIEQDPTYIKAAQARIDKAEVFDEALMGQASNKRKQPRVTFGCLMENGFIR 308
Query: 301 PGQILTNAQGNISATVCADGTLISGTEL-GSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
PG IL +++ A V DG L S GSIH++GA++ + +CNGW FW+FE+ L
Sbjct: 309 PGHILYDSRRRFKAVVNVDGALQSADGRSGSIHKLGAQLQQAVSCNGWIFWHFEENNILL 368
Query: 360 SINTLRILVRKE 371
++ LR E
Sbjct: 369 PLDILRQRYLAE 380
>gi|304319996|ref|YP_003853639.1| modification methylase [Parvularcula bermudensis HTCC2503]
gi|303298899|gb|ADM08498.1| modification methylase [Parvularcula bermudensis HTCC2503]
Length = 344
Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats.
Identities = 194/343 (56%), Positives = 254/343 (74%), Gaps = 2/343 (0%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
++ +P SVDLIFADPPYNLQL L RPD S VD V D+WD+F SF AYDAF RAWL
Sbjct: 1 MKMIPDGSVDLIFADPPYNLQLGDGLTRPDQSTVDGVNDAWDQFGSFAAYDAFCRAWLSE 60
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RR+LKP+G +WVIG+YHNIFR+G+++Q+L +WI ND+VW K+NPMPNFRG R QNAHET
Sbjct: 61 ARRLLKPDGAIWVIGTYHNIFRLGSIIQDLEYWIQNDVVWVKTNPMPNFRGTRLQNAHET 120
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
LIWA+ +++ TFNY +LK AN+D+QMRSDW P+C+G ERL+N G+KLHPTQKPEA
Sbjct: 121 LIWAARGKESRP-TFNYHSLKTANDDLQMRSDWTFPLCTGQERLKN-GGKKLHPTQKPEA 178
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
LL RIL+ +T PGD++LDPFFG+GT+GAVAK+L R +IGIE + YID A +RIA+++P
Sbjct: 179 LLHRILLGTTNPGDLVLDPFFGTGTTGAVAKRLGRHYIGIEREAAYIDAAAERIAAIEPE 238
Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
+T + R E R+ F LVE GL+ PG +L A+ A V ADG+L + GSI
Sbjct: 239 AAEMVTPMPSPRREARIPFGRLVEDGLLSPGTVLYCAKRRYRAKVKADGSLATPGATGSI 298
Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
H++GA + + +CNGW FW+ E+ G L I+TLR VR ++ +
Sbjct: 299 HKIGAHLQNAPSCNGWTFWHVERQGRLLPIDTLRQTVRAQMAS 341
>gi|332188931|ref|ZP_08390632.1| DNA methylase family protein [Sphingomonas sp. S17]
gi|332011042|gb|EGI53146.1| DNA methylase family protein [Sphingomonas sp. S17]
Length = 379
Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats.
Identities = 208/348 (59%), Positives = 259/348 (74%), Gaps = 3/348 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D+I+ G+ I+ L LP KSVD++FADPPYNLQL G+L+RPD S VDAVTD+WDKF +F
Sbjct: 26 LDQILMGDCIAALRSLPDKSVDMVFADPPYNLQLGGELFRPDGSHVDAVTDAWDKFDTFA 85
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYDAFTRAWL C RVLK NG+LWVIGSYHNIFR+GT +Q+L FWILNDI+WRKSNPMPN
Sbjct: 86 AYDAFTRAWLAECYRVLKDNGSLWVIGSYHNIFRVGTAVQDLGFWILNDIIWRKSNPMPN 145
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHETLIWAS KA YTFNY ++K N+++QMRSDW PIC G ERL+ KD
Sbjct: 146 FKGTRFTNAHETLIWASKGEKA-KYTFNYRSMKTLNDEIQMRSDWEFPICGGQERLK-KD 203
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K+HPTQKPEALL RIL++ T+PGD+I DPFFG+GT+GAVAK+L R +IGIE + Y
Sbjct: 204 GHKVHPTQKPEALLYRILLACTRPGDVIADPFFGTGTTGAVAKRLGRRWIGIEREPTYCA 263
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A +RI + PL L + + +P+VAF LVE G + PG L +A+ ATV AD
Sbjct: 264 AAIERIEAALPLDESALATMQSPKAQPKVAFGTLVETGYLAPGMPLMDAKRKWRATVRAD 323
Query: 320 GTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRI 366
G+L+S + GSIHR+G+ + TCNGW FW++E G L I+ +R
Sbjct: 324 GSLLSDCGQAGSIHRLGSLLQNRPTCNGWTFWHYELEGALKPIDAMRQ 371
>gi|330993888|ref|ZP_08317820.1| Modification methylase SmeI [Gluconacetobacter sp. SXCC-1]
gi|329759156|gb|EGG75668.1| Modification methylase SmeI [Gluconacetobacter sp. SXCC-1]
Length = 362
Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats.
Identities = 203/352 (57%), Positives = 264/352 (75%), Gaps = 1/352 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D++++G+ + +++ LPA S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ +
Sbjct: 6 LDQVLRGDCVEMMKTLPAASIDCVFADPPYNLQLKGELRRPDDSIVDGVDDDWDKFTDLQ 65
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYDAFTRAWL RRVL+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPN
Sbjct: 66 AYDAFTRAWLTEARRVLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPN 125
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ + Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN+
Sbjct: 126 FRGRRFTNAHETLIWAARGADS-RYRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNEH 184
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G KLHPTQKPE+LL R+LV+ST D++LDPF G+GT+ A+A++LRR FIGIE DY +
Sbjct: 185 GLKLHPTQKPESLLHRVLVASTNVDDVVLDPFTGTGTTTAMARRLRRRFIGIERHPDYAE 244
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A R +PL + +R PRV F LLVERG++ G +L + Q + ATV D
Sbjct: 245 AAIGRARREKPLPLDSVQTTPARRESPRVPFGLLVERGMVPAGTVLMDRQKRVRATVSPD 304
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
GTL+SG GSIH++GA+++ + +CNGW FWYFE+ GEL ++ LR +R E
Sbjct: 305 GTLVSGRHRGSIHKMGAQLTNAPSCNGWTFWYFEREGELVQLDVLRGDIRAE 356
>gi|299134661|ref|ZP_07027853.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
gi|298590471|gb|EFI50674.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
Length = 376
Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats.
Identities = 216/352 (61%), Positives = 274/352 (77%), Gaps = 1/352 (0%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ G+ ++ + KLPA SVDL+FADPPYNLQL G+L RPD S VDAV + WDKFSSF AY
Sbjct: 24 RIVIGDCVAEMTKLPASSVDLVFADPPYNLQLKGELKRPDESHVDAVNNDWDKFSSFAAY 83
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTRAWLLA RR +KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRK+NPMPNFR
Sbjct: 84 DDFTRAWLLAARRAMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKTNPMPNFR 143
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GRRF NAHET+IWA+ ++ YTFNYDALKAANEDVQ RSDWLIP+C+G ERL+ KDG+
Sbjct: 144 GRRFTNAHETMIWAARD-ESTKYTFNYDALKAANEDVQARSDWLIPLCTGDERLKGKDGK 202
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKPE LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L RS+IG E + Y A
Sbjct: 203 KVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRSYIGFERDKTYAAAA 262
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT 321
KRIA+V+PL L R PRVAF+ L+ERG+I PG L +++ +A V ADG
Sbjct: 263 EKRIAAVEPLPEATLAPFLTARDAPRVAFSELIERGMISPGAKLVDSKKKHAALVRADGA 322
Query: 322 LISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
++ G ++GSIHR+GA GSE CNGW+FW+ E L I+ LR +R+E+
Sbjct: 323 IMLGDKVGSIHRMGAVAQGSEACNGWSFWHVETKKGLRLIDELRAEIRREMQ 374
>gi|312113930|ref|YP_004011526.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
17100]
gi|311219059|gb|ADP70427.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
17100]
Length = 373
Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats.
Identities = 205/351 (58%), Positives = 270/351 (76%), Gaps = 2/351 (0%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I++G+ + +L ++P+ SVDL+FADPPYNLQL G+L RP+++ VD V +WD+F+ F YD
Sbjct: 18 ILQGDCLDILRRMPSASVDLVFADPPYNLQLGGELLRPNNTRVDGVDHAWDRFADFATYD 77
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F+RAWL CRRVLKPNG LWVIG+YHNIFR+GT LQ+L FW++ND++W K+NPMPNF+G
Sbjct: 78 RFSRAWLSECRRVLKPNGALWVIGTYHNIFRLGTALQDLGFWMMNDVIWLKTNPMPNFKG 137
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
RF NAHETLIWA+ KA+ TFNYD++KA N+D+QMRSDWLIPICSG ERLR+ G K
Sbjct: 138 TRFTNAHETLIWAARDEKARP-TFNYDSMKAFNDDLQMRSDWLIPICSGPERLRDDGGRK 196
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPEALL+R+L+++TKPGD++LDPFFG+GT+GAVAK LRR FIGIE DY+ A+
Sbjct: 197 AHPTQKPEALLARVLMATTKPGDLVLDPFFGTGTTGAVAKLLRRRFIGIERDPDYVAAAS 256
Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
RIA+++P ++T KR EPRV F +++ERG+++PG +L +A+ I A V AD +L
Sbjct: 257 ARIAAIEPCDAKAAALITSKRAEPRVPFGMVLERGMLRPGDVLFDAKAEIRAQVMADASL 316
Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEK-LGELHSINTLRILVRKEL 372
+ GSIH VGAK G CNGW FW+FE+ L I+ LR+ VRK +
Sbjct: 317 MWNGTRGSIHSVGAKAQGRGACNGWTFWHFEQPKDGLAPIDLLRMEVRKTM 367
>gi|148253825|ref|YP_001238410.1| DNA adenine methylase CcrM [Bradyrhizobium sp. BTAi1]
gi|146405998|gb|ABQ34504.1| DNA adenine methylase CcrM [Bradyrhizobium sp. BTAi1]
Length = 344
Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats.
Identities = 212/341 (62%), Positives = 264/341 (77%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ KLP SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AYD FTRAWLLA
Sbjct: 1 MSKLPGASVDLVFADPPYNLQLKGELKRPDESQVDAVDDDWDKFSSFAAYDDFTRAWLLA 60
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RR++KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFRGRRF NAHET
Sbjct: 61 ARRLMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFRGRRFTNAHET 120
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+IWA+ KAKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G ERL++ DG+K+HPTQKPE
Sbjct: 121 MIWAARDEKAKGYTFNYEALKASNEDVQARSDWLIPLCTGEERLKDADGKKVHPTQKPEG 180
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
LL+R+L+SS+KPGD+++DPF G+GT+GAVAK+L R +IG E + Y + A +RIA+V+PL
Sbjct: 181 LLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKTYAEAAERRIAAVEPL 240
Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
L R PRVAF+ L+ERG+I PG L +++ A V ADG ++ G ++GSI
Sbjct: 241 PEATLVPFMTAREAPRVAFSELIERGMISPGTKLVDSKRRHGALVRADGAIMLGDKVGSI 300
Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
HR+GA G CNGW FW+ E L I+ LR +R E+
Sbjct: 301 HRIGAVAQGLPACNGWTFWHVETTRGLKLIDELRAEIRAEM 341
>gi|146339056|ref|YP_001204104.1| adenine DNA methyltransferase [Bradyrhizobium sp. ORS278]
gi|146191862|emb|CAL75867.1| adenine DNA methyltransferase [Bradyrhizobium sp. ORS278]
Length = 344
Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats.
Identities = 213/342 (62%), Positives = 264/342 (77%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ KLP SVDL+FADPPYNLQL G+L RPD S VDAV D WDKFSSF AYD FTRAWLLA
Sbjct: 1 MSKLPGASVDLVFADPPYNLQLKGELKRPDESQVDAVDDDWDKFSSFTAYDDFTRAWLLA 60
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RRV+KP+ T+WVIGSYHNIFR+G ++Q+L FWILNDIVWRKSNPMPNFRGRRF NAHET
Sbjct: 61 ARRVMKPSATIWVIGSYHNIFRVGAIMQDLGFWILNDIVWRKSNPMPNFRGRRFTNAHET 120
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+IWA+ KAKGYTFNY+ALKA+NEDVQ RSDWLIP+C+G ERL++ DG+K+HPTQKPE
Sbjct: 121 MIWAARDEKAKGYTFNYEALKASNEDVQARSDWLIPLCTGEERLKDGDGKKVHPTQKPEG 180
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
LL+R+L+SS+K GD+++DPF G+GT+GAVAK+L R +IG E + Y + A +RIA+V+PL
Sbjct: 181 LLARVLLSSSKQGDLVIDPFNGTGTTGAVAKRLGRRYIGFERDKAYAEAAERRIAAVEPL 240
Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
L R PRVAF+ L+ERG+I PG L +++ A V ADG ++ G ++GSI
Sbjct: 241 PAETLAPFMTAREAPRVAFSELIERGMIAPGAKLVDSKRRYGALVRADGAIMLGDKVGSI 300
Query: 332 HRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
HR+GA G CNGW FW+ E G L I+ LR +R E+
Sbjct: 301 HRIGAVAQGLPACNGWTFWHVETKGGLRLIDELRAEIRSEMN 342
>gi|220921468|ref|YP_002496769.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219946074|gb|ACL56466.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
2060]
Length = 368
Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats.
Identities = 214/354 (60%), Positives = 264/354 (74%), Gaps = 2/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSF 78
D++I G+ I+ L+ LP SVDL+FADPPYNLQL L RPD S VDAV D WD+F+SF
Sbjct: 12 LDEVIHGDCIAALDALPPSSVDLVFADPPYNLQLGPASLLRPDQSAVDAVDDDWDQFASF 71
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L FWILNDIVWRK+NPMP
Sbjct: 72 EAYDAFTRQWLQACRRVMKPNATLWVIGSYHNIFRVGSALQDLGFWILNDIVWRKANPMP 131
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHETLIWAS S KGYTF+Y+ALK N+D+QMRSDW +P+C+G ERL+
Sbjct: 132 NFRGKRFTNAHETLIWASRSA-QKGYTFHYEALKGGNDDLQMRSDWFLPLCTGEERLKGA 190
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG KLHPTQKPEAL++R ++S++ PGD++LDPFFG+GT+GA AK+L R FIGIE + Y+
Sbjct: 191 DGRKLHPTQKPEALVARTILSASNPGDVVLDPFFGTGTTGAAAKRLGRRFIGIEREPAYV 250
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
A +RIA+V+PL L KR EPRV F L+E GLI+ G LT+ + A V
Sbjct: 251 QAARERIAAVEPLSTAALLTAPTKRAEPRVPFLSLLEAGLIRAGSQLTDERRRFKALVRP 310
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
DGT+ +G GSIH++GA V G CNGW FW+ E+ G L I+ R +R L
Sbjct: 311 DGTISAGPACGSIHKIGALVQGLPACNGWTFWHAERGGRLVPIDAFRAEIRAGL 364
>gi|296444555|ref|ZP_06886519.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
OB3b]
gi|296257823|gb|EFH04886.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
OB3b]
Length = 390
Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats.
Identities = 201/347 (57%), Positives = 259/347 (74%), Gaps = 1/347 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ ++ G+++ ++ LPA+SVDL+FADPPYNLQL L RPD S VDAV D WDKF+ F
Sbjct: 32 RNSVLLGDNVPLMAGLPAESVDLVFADPPYNLQLANALTRPDQSRVDAVDDDWDKFADFS 91
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD+FTR WL A RRV+KPN T++VIGSYHNIFR+G M+Q+L FWILNDIVWRK+NPMPN
Sbjct: 92 AYDSFTRDWLAAARRVMKPNATIFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKTNPMPN 151
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ + YTF+Y+ALKA NED QMRSDWL+PIC+G ERL++
Sbjct: 152 FRGRRFTNAHETLIWAARDSSCRSYTFHYEALKAGNEDCQMRSDWLLPICTGGERLKDAA 211
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G K HPTQKPEALL+R++++++ PGD++LDPFFGSGT+GAVAK+L R ++G+E Y
Sbjct: 212 GRKTHPTQKPEALLARVMLAASNPGDLVLDPFFGSGTTGAVAKRLGRDYLGLERDPAYAA 271
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A +RIA+++PL + + KR+ PR+AF LVE GL+ G +LT+ G A V D
Sbjct: 272 AARERIAAIEPLPDEAIAAAPTKRSAPRIAFASLVESGLVAAGAMLTDLHGRHRAMVRPD 331
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGE-LHSINTLR 365
G L G +GSIH++GA G CNGW FW+FE G L I+ LR
Sbjct: 332 GALALGQIVGSIHKIGALAQGLPACNGWTFWHFESGGGALAPIDDLR 378
>gi|170747153|ref|YP_001753413.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170653675|gb|ACB22730.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 368
Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats.
Identities = 212/356 (59%), Positives = 270/356 (75%), Gaps = 1/356 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
D+++ G+ I+ + LPA SVD +FADPPYNLQL L RPD S VDAV D WDKF++F
Sbjct: 12 LDQVLVGDCIAAMNALPASSVDCVFADPPYNLQLGDAGLLRPDQSRVDAVDDDWDKFATF 71
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYD FTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 72 EAYDTFTRDWLSACRRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 131
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHETLIWAS S +KGYTF+Y+ALK NED+QMRSDW IP+C+G ERL++
Sbjct: 132 NFRGKRFTNAHETLIWASRSADSKGYTFHYEALKGGNEDLQMRSDWFIPLCTGEERLKDA 191
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIGIE + Y
Sbjct: 192 EGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRRFIGIEREATYA 251
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ A +RIA+V+ L L V KR EPRV F ++E G I+PG+ +T+ + ATV
Sbjct: 252 EAARERIAAVETLSRAALMVAPTKRAEPRVPFLSVIEAGHIRPGETVTDERRRFRATVRP 311
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
DG L +G +GSIH++GA V G CNGW FW+ E+ G+ I+T R +R+ + N
Sbjct: 312 DGQLDNGLVIGSIHKIGALVQGLPACNGWTFWHVERGGKPVVIDTFRAGLRQAMAN 367
>gi|148292196|dbj|BAF62911.1| putative adenine DNA methyltransferase [uncultured bacterium]
Length = 358
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 208/355 (58%), Positives = 263/355 (74%), Gaps = 2/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KD II GN + L LP SVDL+FADPPYNLQL+G L RPD S+VDAV D WDKF SF
Sbjct: 3 KDVIICGNCVDQLAGLPDNSVDLVFADPPYNLQLSGNLTRPDQSVVDAVDDDWDKFDSFA 62
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD + AWL CRRVLK +G LWVIGSYHNIFR+G +LQ+L +WILND+VWRKSNPMPN
Sbjct: 63 AYDQLSEAWLRECRRVLKDDGALWVIGSYHNIFRLGRLLQDLGYWILNDVVWRKSNPMPN 122
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ S + YTFNYDA+KA NE VQMRSDW +PIC+G+ERL+++
Sbjct: 123 FRGRRFTNAHETLIWAAKSEAS-KYTFNYDAMKALNEGVQMRSDWYMPICTGAERLKDQA 181
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K HPTQKPE LL+R+++SSTK GD ILDPFFG+GT+GAVA++L R +IGIE +DY
Sbjct: 182 GQKAHPTQKPENLLARVILSSTKRGDTILDPFFGTGTTGAVARRLGRHYIGIEQNEDYAK 241
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+A +RIA+VQP+ + + KR +PRV F LVE G + G L + ++ A VCAD
Sbjct: 242 LAAERIAAVQPIVDDVILSTPEKRAQPRVPFGALVEGGWLAAGDTLFDKTKSVRARVCAD 301
Query: 320 GTLISGT-ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
G+L++ + GSIH +GA + +CNGW +W+ + G+ SI+ LR RK +
Sbjct: 302 GSLVTDKAQKGSIHGLGATLQNQPSCNGWQYWHVTRDGKDVSIDLLRAEYRKSMK 356
>gi|148654551|ref|YP_001274756.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
RS-1]
gi|148566661|gb|ABQ88806.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
Length = 373
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 196/353 (55%), Positives = 257/353 (72%), Gaps = 3/353 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++II+G+ + VL+ PAKSVDLIFADPPYNLQL QL RP+ ++VD V D WD+F++
Sbjct: 18 NEIIQGDCVEVLKTFPAKSVDLIFADPPYNLQLRNQLLRPNQTVVDGVDDEWDQFANVAE 77
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAFTR WL ACRRVLK +GT+WVIGSYHNIFRIGT++ +L +WILND++W K+NPMPNF
Sbjct: 78 YDAFTRNWLSACRRVLKDDGTIWVIGSYHNIFRIGTIMMDLGYWILNDVIWYKTNPMPNF 137
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RG RFQNA ETLIWA S + K YTFNY A+K N++ QM++ W IP+C+G ER++ +G
Sbjct: 138 RGTRFQNATETLIWAKKSVEQKKYTFNYHAMKHLNDEKQMQNVWHIPLCTGPERIK-LNG 196
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K+H TQKPEALL R++++S+ PGD++LDPFFGSGT+GAVAKKL+R++IGIE++ YIDI
Sbjct: 197 KKVHSTQKPEALLYRVILASSNPGDVVLDPFFGSGTTGAVAKKLKRNYIGIELEPAYIDI 256
Query: 261 ATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A KRI ++ L + V KRT PRV+F L+E I GQ + + + ATV AD
Sbjct: 257 ARKRIDTLPMSLLDETELVTPSKRTVPRVSFGQLIESHYITVGQKVFSKDRKVVATVKAD 316
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILVRKE 371
L+ G GSIHR+ A NGW +WY E + G + SI+ LR R E
Sbjct: 317 SHLLWGNVTGSIHRIAALAQNKPAFNGWEYWYCEDQEGNVISIDALRERYRIE 369
>gi|296536588|ref|ZP_06898668.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
cervicalis ATCC 49957]
gi|296263084|gb|EFH09629.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
cervicalis ATCC 49957]
Length = 363
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 199/350 (56%), Positives = 254/350 (72%), Gaps = 2/350 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I++G+ I +L LP SV IFADPPYNLQL G+L RPD S+VD V D+WD+FS
Sbjct: 9 LDCILEGDCIEMLRALPPASVHAIFADPPYNLQLKGELRRPDESVVDGVDDAWDRFSDLA 68
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD+FTRAWL RRVL+ +GT+WVIGSYHN+FR+G LQ+L+FWILND++WRK+NPMPN
Sbjct: 69 TYDSFTRAWLTEARRVLRKDGTIWVIGSYHNVFRLGVALQDLDFWILNDVIWRKANPMPN 128
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWAS ++ Y FNY A+K+ N+DVQMRSDW IP+C+GSERLR++
Sbjct: 129 FRGRRFTNAHETLIWASRGQES-RYKFNYTAMKSLNDDVQMRSDWFIPLCTGSERLRDEK 187
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K+HPTQKPEALL R+++S T PGD++LDPF GSGT+ AVA++L R +IGIE Y
Sbjct: 188 GQKVHPTQKPEALLHRVILSCTSPGDVVLDPFLGSGTTAAVARRLGRRYIGIERDPTYAA 247
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RI +V+PL + V KR +PR+ F LVERGL+ PG L + A V AD
Sbjct: 248 AARARIQAVEPLSESAMLVTPTKREQPRIPFGALVERGLVPPGARLVDRHRRFVAEVGAD 307
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILV 368
G+L G GSIH+VGA V + +CNGW FW+ E + G L ++ LR +
Sbjct: 308 GSLRCGKAQGSIHQVGAAVQEAPSCNGWLFWHVERRDGTLRLLDELRAEL 357
>gi|58038819|ref|YP_190783.1| adenine DNA methyltransferase [Gluconobacter oxydans 621H]
gi|58001233|gb|AAW60127.1| Adenine DNA methyltransferase [Gluconobacter oxydans 621H]
Length = 361
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 193/347 (55%), Positives = 255/347 (73%), Gaps = 1/347 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I++G I ++ LP SVD IFADPPYNLQL G+L RPD ++VD V D WDKF+ +
Sbjct: 8 DQILRGECIETMKTLPDGSVDCIFADPPYNLQLRGELRRPDETVVDGVDDDWDKFADYAT 67
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD FTR WL RR+L +GT+WVIGSYHN+FR+G ++Q+L FWILNDIVWRKSNPMPNF
Sbjct: 68 YDNFTREWLSEARRILHKDGTIWVIGSYHNVFRLGAIMQDLGFWILNDIVWRKSNPMPNF 127
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RGRRF NAHETLIWA+ P++ Y FNY A+KA N+D+QMRSDW +P+C+G+ERL+N+ G
Sbjct: 128 RGRRFTNAHETLIWAARGPQS-KYRFNYQAMKALNDDLQMRSDWYLPLCTGNERLKNEHG 186
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLHPTQKPE+LL R+LV+ST D++LDPF GSGT+ A+AK+L R +I IE DY+
Sbjct: 187 LKLHPTQKPESLLHRVLVASTNANDVVLDPFCGSGTTPAMAKRLGRHYIAIERHPDYVKA 246
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A +R+A + L + +L KR PR+ F VE G++ G +L + Q + ATV DG
Sbjct: 247 ARERVAREERLTSEQLATTPAKREMPRIPFGSFVETGVLPAGTLLYDRQKRLKATVTPDG 306
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
TL+SG + GSIH++GA ++ + +CNGW FWYFE+ G+ I+ LR
Sbjct: 307 TLVSGNQRGSIHKLGAMLTNAPSCNGWTFWYFERDGQYVQIDVLRQE 353
>gi|162149132|ref|YP_001603593.1| DNA methylase [Gluconacetobacter diazotrophicus PAl 5]
gi|209545124|ref|YP_002277353.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787709|emb|CAP57305.1| putative DNA methylase [Gluconacetobacter diazotrophicus PAl 5]
gi|209532801|gb|ACI52738.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 370
Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats.
Identities = 197/348 (56%), Positives = 256/348 (73%), Gaps = 1/348 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D+I++G+ + +++ LP S+D IFADPPYNLQL G+L RPD S+VD V D WDKFS
Sbjct: 11 LDQILRGDCVELMQTLPTGSIDCIFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFSDLA 70
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FTRAWL RR+L+ +GT+WVIGSYHNIFRIG +LQ+L FWILND++WRKSNPMPN
Sbjct: 71 EYDRFTRAWLGEARRLLRKDGTIWVIGSYHNIFRIGAILQDLGFWILNDVIWRKSNPMPN 130
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ + Y FNY A+KA N+DVQMRSDW +P+C+G ERLRN
Sbjct: 131 FRGRRFTNAHETLIWAARGADS-RYRFNYQAMKALNDDVQMRSDWYLPLCTGGERLRNSH 189
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G KLHPTQKPE+LL R+LV+ST DI+LDPF G+GT+ A+A++LRR FIGIE DY +
Sbjct: 190 GLKLHPTQKPESLLHRVLVASTNVDDIVLDPFAGTGTTTAMARRLRRRFIGIERHPDYAE 249
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A R +P+ + KR PRV F LVERGL+ G ++ + +SATV D
Sbjct: 250 AAIGRARRERPVPLDSVLTTPAKRETPRVPFGSLVERGLLPVGTVMYDRHQRVSATVAPD 309
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRIL 367
GTL+SGT+ GSIH++GA ++ + +CNGW FW+ ++ G++ ++TLR
Sbjct: 310 GTLVSGTQRGSIHKLGALLTNAPSCNGWTFWHLQRDGQMIPLDTLRNE 357
>gi|156741987|ref|YP_001432116.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156233315|gb|ABU58098.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 370
Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats.
Identities = 184/351 (52%), Positives = 245/351 (69%), Gaps = 3/351 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II+G+ I VL+ P +SVDLIFADPPYNLQL L RPD ++VD V D+WD+F +
Sbjct: 14 NAIIQGDCIQVLQMFPEQSVDLIFADPPYNLQLRHALLRPDQTVVDGVDDAWDRFEDVQE 73
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAFTRAWL ACRRVLK +GT+WVIG+YHNIFR+G ++ +L +WILND++W K+NPMPNF
Sbjct: 74 YDAFTRAWLGACRRVLKDDGTIWVIGTYHNIFRVGAIMMDLGYWILNDVIWHKTNPMPNF 133
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RG RFQNA ETLIWA S K YTFNY A+K NE+ QM++ W +P+C+G+ER++ +G
Sbjct: 134 RGVRFQNATETLIWAKKSADQKKYTFNYHAMKHLNEEKQMQNVWHLPLCTGAERVK-ING 192
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VA++L+R +IGIE+ Y++I
Sbjct: 193 KKAHSTQKPEALLYRVILSSSNPGDLVLDPFFGSGTTGVVARRLKRHYIGIELDPAYVEI 252
Query: 261 ATKRIASVQ-PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
A RI + + + KR PRV F LVE ++ GQ L ++ N+ A V AD
Sbjct: 253 ARTRIEKTPVSVCDDAMLATRSKRDMPRVGFGQLVEAQYLRVGQNLYSSDRNVVAIVRAD 312
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKL-GELHSINTLRILVR 369
L G SIHR+ A NGW +W++E G L SI++LR R
Sbjct: 313 SQLQWGNITSSIHRIAALAQHKPAFNGWEYWHYEDQAGRLVSIDSLREQYR 363
>gi|148260450|ref|YP_001234577.1| DNA methylase N-4/N-6 domain-containing protein [Acidiphilium
cryptum JF-5]
gi|146402131|gb|ABQ30658.1| DNA methylase N-4/N-6 domain protein [Acidiphilium cryptum JF-5]
Length = 360
Score = 388 bits (996), Expect = e-106, Method: Composition-based stats.
Identities = 186/350 (53%), Positives = 255/350 (72%), Gaps = 1/350 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D+++ G+++ ++ LP S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ F
Sbjct: 11 LDQLLLGDAVEMMRMLPDASIDCVFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFTDFA 70
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD F+RAWL RR++ + T+WVIGSYHNIFR+G ++Q+L FWILND++WRK+NPMPN
Sbjct: 71 AYDEFSRAWLSEARRLMHKDATIWVIGSYHNIFRLGAIMQDLGFWILNDVIWRKTNPMPN 130
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ PK+ Y FNY A+K+ N+D QMRSDW IP+C+G ERLRN+
Sbjct: 131 FRGRRFTNAHETLIWAAREPKS-RYRFNYQAMKSLNDDTQMRSDWTIPLCTGGERLRNQH 189
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G KLHPTQKPEALL R+++++T P D++LDPF G+ T+ VAK+L R FIGIE Y++
Sbjct: 190 GLKLHPTQKPEALLHRVILAATNPDDVVLDPFSGTATTATVAKRLNRHFIGIERHPAYVE 249
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
R+ ++ + +R PR+AF +LVERGL+ PG +L + +SATV AD
Sbjct: 250 AGWARLREMRAAPAHLTRPMPSRREAPRIAFGVLVERGLVPPGTLLHDRLRRVSATVAAD 309
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
++I+G GSIH+VGA V + +CNGW FW+ E+ G L +++ +R +R
Sbjct: 310 ASIIAGAHRGSIHQVGAAVQNAASCNGWTFWHIEREGRLVALDHVRETLR 359
>gi|309792788|ref|ZP_07687231.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
trichoides DG6]
gi|308225152|gb|EFO78937.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
trichoides DG6]
Length = 357
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 188/356 (52%), Positives = 253/356 (71%), Gaps = 3/356 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I+ G+ I +L LP K VDLIFADPPYNLQL +L RP+ ++VDAVTD+WD+F+ F
Sbjct: 1 MNHILHGSCIDLLPSLPEKCVDLIFADPPYNLQLQNELIRPNQTVVDAVTDTWDQFADFA 60
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FT WL ACRRVLK +GT+WVIGSYHNIFR+G ++ +L +WILND++W K+NPMPN
Sbjct: 61 AYDHFTEQWLSACRRVLKDDGTIWVIGSYHNIFRVGKIMMDLGYWILNDVIWHKTNPMPN 120
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG RFQNA ET+IWA S + K YTF+Y A+K N+D QM++ W IP+C+G+ER++ D
Sbjct: 121 FRGTRFQNATETMIWAKKSREQKKYTFHYQAMKNFNDDKQMQNVWYIPLCTGAERIK-ID 179
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K H TQKPEALL R+LV+S+ PGD++LDPFFGSGT+GAVAK+L+R++IGIE +Y++
Sbjct: 180 GKKAHSTQKPEALLYRVLVASSNPGDMVLDPFFGSGTTGAVAKRLQRNYIGIERSAEYVE 239
Query: 260 IATKRIASVQPLGNIELT-VLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
IA +RIA++ + KR PR++F L+E I GQ + + ++A V A
Sbjct: 240 IARQRIAAISATCLEHGELLTRSKRNAPRISFGQLLEAQYISVGQPIFSQDRAVTAIVKA 299
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEK-LGELHSINTLRILVRKELY 373
D LI + GSIH++ A V NGW +WY+E G L SI+ LR R E +
Sbjct: 300 DAQLICNDQTGSIHKIAASVQNRAAANGWEYWYYEDAAGNLVSIDELRERYRHENH 355
>gi|326403643|ref|YP_004283725.1| hypothetical protein ACMV_14960 [Acidiphilium multivorum AIU301]
gi|325050505|dbj|BAJ80843.1| hypothetical protein ACMV_14960 [Acidiphilium multivorum AIU301]
Length = 358
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 186/350 (53%), Positives = 255/350 (72%), Gaps = 1/350 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D+++ G+++ ++ LP S+D +FADPPYNLQL G+L RPD S+VD V D WDKF+ F
Sbjct: 9 LDQLLLGDAVEMMRMLPDASIDCVFADPPYNLQLRGELRRPDDSVVDGVDDDWDKFTDFA 68
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD F+RAWL RR++ + T+WVIGSYHNIFR+G ++Q+L FWILND++WRK+NPMPN
Sbjct: 69 AYDEFSRAWLSEARRLMHKDATIWVIGSYHNIFRLGAIMQDLGFWILNDVIWRKTNPMPN 128
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRGRRF NAHETLIWA+ PK+ Y FNY A+K+ N+D QMRSDW IP+C+G ERLRN+
Sbjct: 129 FRGRRFTNAHETLIWAAREPKS-RYRFNYQAMKSLNDDTQMRSDWTIPLCTGGERLRNQH 187
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G KLHPTQKPEALL R+++++T P D++LDPF G+ T+ VAK+L R FIGIE Y++
Sbjct: 188 GLKLHPTQKPEALLHRVILAATNPDDVVLDPFSGTATTATVAKRLNRHFIGIERHPAYVE 247
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
R+ ++ + +R PR+AF +LVERGL+ PG +L + +SATV AD
Sbjct: 248 AGWARLREMRAAPAHLTRPMPSRREAPRIAFGVLVERGLVPPGTLLHDRLRRVSATVAAD 307
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR 369
++I+G GSIH+VGA V + +CNGW FW+ E+ G L +++ +R +R
Sbjct: 308 ASIIAGAHRGSIHQVGAAVQNAASCNGWTFWHIEREGRLVALDHVRETLR 357
>gi|170739049|ref|YP_001767704.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
sp. 4-46]
gi|168193323|gb|ACA15270.1| DNA methylase N-4/N-6 domain protein [Methylobacterium sp. 4-46]
Length = 396
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 217/355 (61%), Positives = 265/355 (74%), Gaps = 2/355 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ-LYRPDHSLVDAVTDSWDKFSSF 78
D++I+G+ ++ L+ LP SVDL+FADPPYNLQL L RPD S VDAV D WD+F+SF
Sbjct: 40 LDEVIQGDCLAALDALPPSSVDLVFADPPYNLQLGEAALLRPDQSAVDAVDDDWDQFASF 99
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
EAYDAFTR WL ACRRV+KPN TLWVIGSYHNIFR+G+ LQ+L FWILNDIVWRK+NPMP
Sbjct: 100 EAYDAFTRQWLQACRRVMKPNATLWVIGSYHNIFRVGSALQDLGFWILNDIVWRKANPMP 159
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHETLIWAS S KGYTF+Y++LK N+D+QMRSDW +P+C+G ERL+ +
Sbjct: 160 NFRGKRFTNAHETLIWASRSA-QKGYTFHYESLKGGNDDLQMRSDWFLPLCTGEERLKGE 218
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG KLHPTQKPEALL+R ++S++ PGD++LDPFFG+GT+GAVAK+L R FIGIE + Y
Sbjct: 219 DGRKLHPTQKPEALLARTILSASNPGDVVLDPFFGTGTTGAVAKRLGRRFIGIERESAYA 278
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
A RIA+V+PL L KR EPRV F L+E GLI PG LT+ + A V
Sbjct: 279 AAARARIAAVEPLSTAALLTAPAKRAEPRVPFLNLIEAGLIAPGSQLTDERRRFRALVRP 338
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
DGTL G GSIH++GA V G CNGW FW+ E+ G L I+ LR +R L
Sbjct: 339 DGTLSVGPACGSIHKIGALVQGLPACNGWTFWHTERGGRLVVIDALRAQIRAGLE 393
>gi|262276831|ref|ZP_06054624.1| modification methylase CcrMI (Adenine-specificmethyltransferase
CcrMI) (M.CcrMI) [alpha proteobacterium HIMB114]
gi|262223934|gb|EEY74393.1| modification methylase CcrMI (Adenine-specificmethyltransferase
CcrMI) (M.CcrMI) [alpha proteobacterium HIMB114]
Length = 353
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 180/350 (51%), Positives = 250/350 (71%), Gaps = 2/350 (0%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + L+++ ++SVDLIFADPPYNLQL +L+RPD S V AV D WDKF SF+ YD
Sbjct: 6 LYNLDCLGKLKEIESESVDLIFADPPYNLQLKNKLFRPDASKVSAVNDYWDKFDSFKTYD 65
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
FT +WL C+R+LK NG++WVIGSYHNIFR+G ++Q+ ++WILND++W K NPMPNF+G
Sbjct: 66 DFTNSWLKECKRILKKNGSIWVIGSYHNIFRVGKLIQDNSYWILNDVIWNKRNPMPNFKG 125
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R NAHETLIWA+ S K+ YTFNY ++K NED Q+RSDW IPIC+GSER+ +K+ +K
Sbjct: 126 TRLTNAHETLIWAAKSEKS-KYTFNYHSMKTFNEDKQLRSDWDIPICNGSERITSKN-KK 183
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+H TQKPEALL R+L+ ++ DI+LDPF G+GT+GAVAKKL R+FIGIE + Y A
Sbjct: 184 IHSTQKPEALLYRVLLCASNKNDIVLDPFMGTGTTGAVAKKLGRNFIGIEKDKKYFKAAE 243
Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
+RI ++ + +T K+ E R+ F LVE G+++PG L + + A V +DG++
Sbjct: 244 QRIKRIKEIDENFNIPMTNKKKEKRIPFGYLVETGIVEPGLNLFDLKKRYKAKVMSDGSI 303
Query: 323 ISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
GSIH+VGA++ G +CNGW++W+F G+L I+ LR +R L
Sbjct: 304 YCNKIQGSIHKVGAEIQGMPSCNGWSYWHFNIEGKLEPIDYLRKKIRSSL 353
>gi|16082180|ref|NP_394624.1| adenine specific DNA methyltransferase [Thermoplasma acidophilum
DSM 1728]
gi|10640479|emb|CAC12293.1| probable adenine specific DNA methyltransferase [Thermoplasma
acidophilum]
Length = 381
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 186/354 (52%), Positives = 249/354 (70%), Gaps = 3/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ +I G+SI +++++P SVDLIFADPPYNLQL +LYRP+ + V+ V++ WDKF SF+
Sbjct: 24 LNNVISGDSIEIMKQIPDNSVDLIFADPPYNLQLENELYRPNETKVNGVSEDWDKFRSFQ 83
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD FT WL C+R+LK +GT+WVIG+YHNIFR+G ++Q+L FWILNDIVW K+NPMPN
Sbjct: 84 DYDDFTLNWLSQCKRILKESGTIWVIGTYHNIFRVGKIMQDLGFWILNDIVWIKTNPMPN 143
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF NAHETLIWAS ++ YTFNY +KA N+D+QMRSDW IPIC G ER++ +
Sbjct: 144 FKGTRFNNAHETLIWASKDKES-KYTFNYKTMKAYNDDLQMRSDWYIPICQGDERIK-IN 201
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+KLHPTQKPEALL RI+ +++KPGDI+LDPF G+GT+ VAKKL RSFIGIE + Y+D
Sbjct: 202 GQKLHPTQKPEALLYRIITATSKPGDIVLDPFAGTGTTLVVAKKLGRSFIGIEKEPLYVD 261
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+R+ + L + RV F L+E G ++ G+ L + G A V A+
Sbjct: 262 ACRERLKNTASYQQK-LLDYPLEIRPKRVPFGSLIENGYVKAGEYLYSPDGEARALVLAN 320
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
GTL + GSIH++ A + NGW FWY ++ G+L SIN LR + K+ Y
Sbjct: 321 GTLSYEDKYGSIHKISAMILNKPANNGWAFWYVKRDGKLVSINDLRQKLLKDQY 374
>gi|240139930|ref|YP_002964407.1| site-specific DNA-methyltransferase (adenine-specific)
[Methylobacterium extorquens AM1]
gi|240009904|gb|ACS41130.1| site-specific DNA-methyltransferase (adenine-specific)
[Methylobacterium extorquens AM1]
Length = 398
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 215/353 (60%), Positives = 269/353 (76%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL L RPD S+VDAV D WDKFSSF
Sbjct: 44 LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AYD FTRAWL A RRV+KPNGTLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 104 SAYDDFTRAWLKAARRVMKPNGTLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 163
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHETLIWAS SP+A YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 164 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 222
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E Y
Sbjct: 223 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYA 282
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
A RI S++ L L + T KR+EPR+ F +VE G ++PG+ LT+ + ATV
Sbjct: 283 TAARARIDSIETLSAASLALATPKRSEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRP 342
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
DG L G +GSIH+VGA V G CNGW FW+ E+ G+L I+ R +R +
Sbjct: 343 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395
>gi|254562354|ref|YP_003069449.1| site-specific DNA-methyltransferase [Methylobacterium extorquens
DM4]
gi|254269632|emb|CAX25603.1| site-specific DNA-methyltransferase (adenine-specific)
[Methylobacterium extorquens DM4]
Length = 398
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 213/353 (60%), Positives = 266/353 (75%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL L RPD S+VDAV D WDKFSSF
Sbjct: 44 LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 104 SAYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 163
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHETLIWAS SP+A YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 164 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 222
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E Y
Sbjct: 223 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYA 282
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
A RI S++ L L + KR EPR+ F +VE G ++PG+ LT+ + ATV
Sbjct: 283 TAARARIDSIETLSAASLALAMPKRAEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRP 342
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
DG L G +GSIH+VGA V G CNGW FW+ E+ G+L I+ R +R +
Sbjct: 343 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395
>gi|163852596|ref|YP_001640639.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
extorquens PA1]
gi|163664201|gb|ABY31568.1| DNA methylase N-4/N-6 domain protein [Methylobacterium extorquens
PA1]
Length = 398
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 214/353 (60%), Positives = 267/353 (75%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL L RPD S+VDAV D WDKFSSF
Sbjct: 44 LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 104 SAYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 163
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHETLIWAS SP+A YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 164 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 222
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E Y
Sbjct: 223 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYA 282
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
A RI S++ L L + T KR EPR+ F +VE G ++PG+ LT+ + ATV
Sbjct: 283 TAARARIDSIETLSAASLALATPKRAEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRP 342
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
DG L G +GSIH+VGA V G CNGW FW+ E+ G+L I+ R +R +
Sbjct: 343 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLVCIDDFRTEMRGQ 395
>gi|218531437|ref|YP_002422253.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
chloromethanicum CM4]
gi|218523740|gb|ACK84325.1| DNA methylase N-4/N-6 domain protein [Methylobacterium
chloromethanicum CM4]
Length = 398
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 213/353 (60%), Positives = 267/353 (75%), Gaps = 2/353 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL L RPD S+VDAV D WDKFSSF
Sbjct: 44 LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 104 SAYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 163
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHETLIWAS SP+A YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 164 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 222
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVAK+L R FIG E Y
Sbjct: 223 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVAKRLGRHFIGCERDPTYA 282
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
A RI ++ L L + T KR+EPR+ F +VE G ++PG+ LT+ + ATV
Sbjct: 283 TAARARIDGIETLSAASLALATPKRSEPRIPFLSVVEAGHVRPGETLTDERRRFRATVRP 342
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
DG L G +GSIH+VGA V G CNGW FW+ E+ G+L I+ R +R +
Sbjct: 343 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERSGKLVCIDDFRTEMRGQ 395
>gi|49420962|gb|AAT65821.1| M.EsaWC2I [uncultured bacterium]
Length = 366
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 192/358 (53%), Positives = 253/358 (70%), Gaps = 6/358 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++II+G+ I L P KS+DLIFADPPYNLQL +L+RP+ + VDAV D WDKF S +
Sbjct: 5 LNQIIEGDCIETLSTFPEKSIDLIFADPPYNLQLQNELHRPNMTKVDAVDDQWDKFESLQ 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G ++Q+L FWILND++W K+NPMPN
Sbjct: 65 AYDEFTRRWLTACKRVLKPTGTIWVIGTYHNIFRVGAIMQDLGFWILNDVIWIKTNPMPN 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRNK 198
FRG RF NAHETLIWAS + K YTFN+ A+K N+D QMRSDW + + +GSER+++
Sbjct: 125 FRGVRFTNAHETLIWAS-TGKGATYTFNHQAMKGLNDDKQMRSDWWLLSLATGSERVKDD 183
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
GEK H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IG+E ++ YI
Sbjct: 184 HGEKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGVEREKKYI 243
Query: 259 DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ-GNISAT 315
+IA KRI +VQP + V + +T PRV F+ LVE G +QPGQ L + N A
Sbjct: 244 EIARKRIDAVQPEVFNPVVFDVRSKAKTAPRVEFSTLVEHGYVQPGQTLFFRKDTNKVAF 303
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
+ D L +G GSIH+ G+ + CNGW W+ + G S+ LR R ++
Sbjct: 304 IKPDARLRTGDGFEGSIHQAGSYYMNNAPCNGWEHWFVQVNGHFISLGDLREQFRMDM 361
>gi|159899562|ref|YP_001545809.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892601|gb|ABX05681.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
ATCC 23779]
Length = 375
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 203/355 (57%), Positives = 254/355 (71%), Gaps = 7/355 (1%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I+ G+ VL LP SVDLIFADPPYNLQL G L RP+ + VDAV D WD F F A
Sbjct: 9 DQILLGDCRDVLPLLPPASVDLIFADPPYNLQLRGDLLRPNMTHVDAVDDDWDSFRDFAA 68
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YDAFTRAWL AC+RVLK NGT+WVIGSYHNI+R+GT+LQ+L FWILNDIVW K NPMPNF
Sbjct: 69 YDAFTRAWLQACQRVLKDNGTMWVIGSYHNIYRVGTILQDLGFWILNDIVWIKRNPMPNF 128
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RG R NAHETLIW + P + YTFNY AL+ N+D QMRSDW P+C+G+ERLR +G
Sbjct: 129 RGVRLTNAHETLIWCAKLP-GQKYTFNYHALRHLNDDKQMRSDWEFPLCTGNERLR-ING 186
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K+H TQKPEALL R+L++S+ GD++LDPFFG+GT+GAVAK+L R +IGIE Y++
Sbjct: 187 NKVHSTQKPEALLYRVLLASSNVGDVVLDPFFGTGTTGAVAKRLARHYIGIERDPSYVEA 246
Query: 261 ATKRIASVQ-PLGNIELTVLTG-KRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVC 317
A RIA+++ P L L KR PR+ F L+E GL+Q GQ L N N+ AT+
Sbjct: 247 ARGRIAAIESPSSTDALQALPSNKRRIPRIPFGNLLEHGLLQAGQQLWFNRDPNLVATLL 306
Query: 318 ADGTL-ISGTELGSIHRVGAKVSGSETCNGWNFWYFE-KLGELHSINTLRILVRK 370
AD +L +S GSIH++G ++G +CNGW W+F+ G L SI+ LR VR+
Sbjct: 307 ADASLRMSDGTRGSIHKLGTILTGQPSCNGWEHWFFQASDGTLTSIDVLRQEVRR 361
>gi|188582617|ref|YP_001926062.1| DNA methylase N-4/N-6 domain protein [Methylobacterium populi
BJ001]
gi|179346115|gb|ACB81527.1| DNA methylase N-4/N-6 domain protein [Methylobacterium populi
BJ001]
Length = 370
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 211/352 (59%), Positives = 264/352 (75%), Gaps = 2/352 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
D+I+ G+ I+ +++LPA+SVD +FADPPYNLQL L RPD S+VDAV D WDKFSSF
Sbjct: 16 LDEILIGDCIAAMDRLPAESVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 75
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWRK+NPMP
Sbjct: 76 AAYDDFTRAWLKAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRKANPMP 135
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NFRG+RF NAHETLIWAS SP+A YTF+YDALKA NED+QMRSDW IP+C+G ERL+++
Sbjct: 136 NFRGKRFTNAHETLIWASRSPQA-KYTFHYDALKAGNEDLQMRSDWFIPLCTGEERLKDE 194
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G K+HPTQKPEALL+R L+++T PGD++LDPFFG+GT+GAVA++L R FIG E Y
Sbjct: 195 AGRKVHPTQKPEALLARTLLAATNPGDVVLDPFFGTGTTGAVARRLGRHFIGCERDPTYA 254
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
A RI ++ L L + T KR EPR+ F +VE G ++ G+ LT+ + ATV
Sbjct: 255 AAARTRIDGIETLSAASLALATPKRAEPRIPFLSVVEAGHVRAGETLTDERRRFRATVRP 314
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
DG L G +GSIH+VGA V G CNGW FW+ E+ G+L I+ R +R
Sbjct: 315 DGQLSVGPAMGSIHKVGALVQGLPACNGWTFWHAERGGKLICIDDYRSEMRA 366
>gi|156742203|ref|YP_001432332.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156233531|gb|ABU58314.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 369
Score = 365 bits (936), Expect = 9e-99, Method: Composition-based stats.
Identities = 191/362 (52%), Positives = 255/362 (70%), Gaps = 8/362 (2%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++II+G+ + +L LP S+DLIFADPPY+LQL +L+RP+ + VDAV D WDKF S +
Sbjct: 5 LNQIIEGDCVEILNTLPETSIDLIFADPPYHLQLQNELHRPNMTKVDAVDDDWDKFESMQ 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G M+Q+L FWILND++W K NPMPN
Sbjct: 65 AYDEFTRTWLTACKRVLKPTGTIWVIGTYHNIFRVGAMMQDLGFWILNDVIWIKLNPMPN 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI-CSGSERLRNK 198
FRG RF NAHETLIWAS + K YTFNY A+K N++ QMRSDW + +GSER++N+
Sbjct: 125 FRGVRFTNAHETLIWAS-TGKDATYTFNYYAMKGLNDEKQMRSDWWLLPLATGSERVKNE 183
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IGIE ++ Y+
Sbjct: 184 HGDKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGIEKEKRYV 243
Query: 259 DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISAT 315
IA KRI ++QP V + ++ P+V F++LVE G +QPGQ L AT
Sbjct: 244 QIAQKRIDAMQPEMFDAATFDVKSKAKSAPKVEFSVLVEHGYVQPGQRLFFGKDKTKVAT 303
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR--KEL 372
+ D L + GSIH+ G+ + CNGW W+ E G++ S++ +R R K L
Sbjct: 304 IKPDARLRTADGFEGSIHQAGSHYMNNAPCNGWEHWFIEVDGQMISLDEVREKFRVDKGL 363
Query: 373 YN 374
YN
Sbjct: 364 YN 365
>gi|219850190|ref|YP_002464623.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aggregans DSM 9485]
gi|219544449|gb|ACL26187.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
9485]
Length = 369
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 191/362 (52%), Positives = 254/362 (70%), Gaps = 8/362 (2%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++I+G+ + +L LP S+DLIFADPPY+LQL +LYRP+ + VDAV D WDKF S +
Sbjct: 5 LNQVIEGDCVEILNTLPETSIDLIFADPPYHLQLQNELYRPNMTKVDAVDDDWDKFESMQ 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD FTR WL AC+RVLKP GT+WVIG+YHNIFR+G ++Q+L FWILND++W K NPMPN
Sbjct: 65 AYDEFTRTWLTACKRVLKPTGTIWVIGTYHNIFRVGAIMQDLGFWILNDVIWIKLNPMPN 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI-CSGSERLRNK 198
FRG RF NAHETLIWAS + K YTFNY A+K N++ QMRSDW + +GSER++N+
Sbjct: 125 FRGVRFTNAHETLIWAS-TGKDATYTFNYYAMKGLNDEKQMRSDWWLLPLATGSERVKNE 183
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+K H TQKPEALL R+++SS+ PGD++LDPFFGSGT+G VAK+L R++IGIE ++ YI
Sbjct: 184 NGDKAHSTQKPEALLYRVILSSSNPGDVVLDPFFGSGTTGVVAKRLHRNWIGIEKEKKYI 243
Query: 259 DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISAT 315
IA KRI +VQP V + ++ P+V F++LVE G +QPGQ L AT
Sbjct: 244 QIAQKRIDAVQPEMFDAATFDVKSKAKSAPKVEFSVLVEHGYVQPGQRLFFGKDKTKVAT 303
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVR--KEL 372
+ D L + GSIH+ G+ + CNGW W+ E G++ + +R R K L
Sbjct: 304 IKPDSRLRTADGFEGSIHQAGSHYMNNAPCNGWEHWFIEVDGQMIGLGEVREKFRVDKGL 363
Query: 373 YN 374
YN
Sbjct: 364 YN 365
>gi|320161362|ref|YP_004174586.1| putative modification methylase [Anaerolinea thermophila UNI-1]
gi|319995215|dbj|BAJ63986.1| putative modification methylase [Anaerolinea thermophila UNI-1]
Length = 368
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 197/351 (56%), Positives = 254/351 (72%), Gaps = 6/351 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I++G+ +L LP +S+DLIFADPPYNLQL LYRPD S VDAV DSWD+F+SF
Sbjct: 10 LNQILQGDCRQILPSLPDQSIDLIFADPPYNLQLQQDLYRPDRSRVDAVNDSWDQFTSFA 69
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD F+R+WL CRRVLK +G +WVIG+YHNIFR+GT+LQ+L FWILND+VW KSNPMPN
Sbjct: 70 EYDEFSRSWLTECRRVLKDDGAIWVIGTYHNIFRLGTILQDLGFWILNDVVWIKSNPMPN 129
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG RF NAHETLIWA S +A YTFN+ A+KA NED+QMRSDW IPICSG+ER+R
Sbjct: 130 FRGVRFTNAHETLIWAVKSRRA-NYTFNHHAMKALNEDLQMRSDWYIPICSGTERIR-IH 187
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K+H TQKPEALL RI++++T+PGD+ILDPFFG+GT+GAVA++L R++IGIE + YI+
Sbjct: 188 GKKVHSTQKPEALLYRIILATTRPGDVILDPFFGTGTTGAVARRLGRNWIGIEKEPRYIE 247
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL-TNAQGNISATVCA 318
+A +RI ++P L + R + R+ F LVE+ L+QPGQIL + I A V +
Sbjct: 248 LARQRIEQIEPYPQQALALPVRSR-KSRLPFGRLVEQNLVQPGQILFFDRNPEIRAVVLS 306
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYF-EKLGELHSINTLRILV 368
DG L GSIH K+ G NGW W+F ++ G I+ LR
Sbjct: 307 DGHLSVNGWKGSIHMTAEKICGHP-TNGWERWFFLDEQGIFQPISILRQKY 356
>gi|127456|sp|P20590|MTH1_HAEIN RecName: Full=Modification methylase HinfI; Short=M.HinfI; AltName:
Full=Adenine-specific methyltransferase HinfI
gi|148945|gb|AAA24986.1| methylase [Haemophilus influenzae]
Length = 359
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 156/356 (43%), Positives = 237/356 (66%), Gaps = 2/356 (0%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
+ +I ++ + I+KG+ I L+ +P +S+DLIFADPPY +Q G+L R + V D W
Sbjct: 3 KENINDFLNTILKGDCIEKLKTIPNESIDLIFADPPYFMQTEGKLLRTNGDEFSGVDDEW 62
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
DKF+ F YD+F WL C+R+LK G++WVIGS+ NI+RIG ++QNL+FWILND++W
Sbjct: 63 DKFNDFVEYDSFCELWLKECKRILKSTGSIWVIGSFQNIYRIGYIMQNLDFWILNDVIWN 122
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K+NP+PNF G RF NAHET++W S K +TFNY +K N++ Q RS W + +C+G
Sbjct: 123 KTNPVPNFGGTRFCNAHETMLWCSKCKK-NKFTFNYKTMKHLNQEKQERSVWSLSLCTGK 181
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
ER+++++G+K H TQKPE+LL ++++SS+KP D++LDPFFG+GT+GAVAK L R++IGIE
Sbjct: 182 ERIKDEEGKKAHSTQKPESLLYKVILSSSKPNDVVLDPFFGTGTTGAVAKALGRNYIGIE 241
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
+Q YID+A KR+ ++P N + +L+ + P+V L+E ++ GQ L + N
Sbjct: 242 REQKYIDVAEKRLREIKPNPND-IELLSLEIKPPKVPMKTLIEADFLRVGQTLFDKNENA 300
Query: 313 SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
V DG + E SIH++ AK NGW+++Y + ++++LR
Sbjct: 301 ICIVTQDGNVKDNEETLSIHKMSAKYLNKTNNNGWDYFYLFRNNNFITLDSLRYEY 356
>gi|255603684|ref|XP_002538097.1| Modification methylase CcrMI, putative [Ricinus communis]
gi|223513836|gb|EEF24286.1| Modification methylase CcrMI, putative [Ricinus communis]
Length = 311
Score = 352 bits (902), Expect = 6e-95, Method: Composition-based stats.
Identities = 188/294 (63%), Positives = 226/294 (76%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G+ I + LP KSVDLIFADPPYNLQL G L RPD+S VDAV D WD+F SF AY
Sbjct: 7 TIIQGDCIEAMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKVDAVDDHWDQFESFAAY 66
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D FTR WL A RRVLK +G +WVIGSYHNIFR+G +Q+L FWILND++WRK+NPMPNF+
Sbjct: 67 DKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDVIWRKTNPMPNFK 126
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G RF NAHETLIWAS S AK YTFNYDALK AN++VQMRSDW IP+C+G ER++ DG+
Sbjct: 127 GTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQ 186
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKPEALL R+++S+TKPGD+ILDPFFG GT+GA AK+L R FIGIE + +YI+ A
Sbjct: 187 KAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYIEHA 246
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
RIA V P+ +L + KR EPRV F +VE GL+ PG L A+G +A
Sbjct: 247 RTRIAQVTPIAPQDLEMTGSKRAEPRVPFGAIVENGLLHPGDTLYCAKGAHAAK 300
>gi|260495302|ref|ZP_05815429.1| DNA methylase [Fusobacterium sp. 3_1_33]
gi|260197080|gb|EEW94600.1| DNA methylase [Fusobacterium sp. 3_1_33]
Length = 357
Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats.
Identities = 175/354 (49%), Positives = 245/354 (69%), Gaps = 2/354 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI KG+SI VL+K+P++SVD IFADPPY +Q G+L R D + + V D WDKF +F+
Sbjct: 4 NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFENFQD 63
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD F++ WL CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64 YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
G+RF N+HET++W S K+ TFNY +K N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKS-KITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT+GAVA + R++IGIE ++ YI
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTTGAVAVETGRNYIGIEREEKYIKA 242
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KRIAS + +T L + P+V LVE+G ++ Q+L N+ G TV ++G
Sbjct: 243 AEKRIAS-KIYQKNMITELLLEVKPPKVPLKKLVEKGYLKENQVLYNSLGEAKVTVLSNG 301
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
+ G E SIH++ AK+ NGW+++Y G+L +N LR KE+ N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYDKEVNN 355
>gi|256027628|ref|ZP_05441462.1| adenine specific DNA methyltransferase (HINFIM) [Fusobacterium sp.
D11]
gi|289765586|ref|ZP_06524964.1| methylase [Fusobacterium sp. D11]
gi|289717141|gb|EFD81153.1| methylase [Fusobacterium sp. D11]
Length = 357
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 175/354 (49%), Positives = 244/354 (68%), Gaps = 2/354 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI KG+SI VL+K+P++SVD IFADPPY +Q G+L R D + + V D WDKF +F+
Sbjct: 4 NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFENFQD 63
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD F++ WL CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64 YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
G+RF N+HET++W S K+ TFNY +K N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKS-KITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT GAVA + R++IGIE ++ YI
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTIGAVAVETGRNYIGIEREEKYIKA 242
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KRIAS + +T L + P+V LVE+G ++ Q+L N+ G TV ++G
Sbjct: 243 AEKRIAS-KIYQKNMITELLLEVKPPKVPLKKLVEKGYLKENQVLYNSLGEAKVTVLSNG 301
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
+ G E SIH++ AK+ NGW+++Y G+L +N LR KE+ N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYDKEVNN 355
>gi|237743216|ref|ZP_04573697.1| modification methylase HinfI [Fusobacterium sp. 7_1]
gi|229433512|gb|EEO43724.1| modification methylase HinfI [Fusobacterium sp. 7_1]
Length = 357
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 174/354 (49%), Positives = 242/354 (68%), Gaps = 2/354 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI KG+SI VL+K+P++SVD IFADPPY +Q G+L R D + + V D WDKF +F+
Sbjct: 4 NKIFKGDSIEVLKKIPSESVDFIFADPPYYMQTEGELLRIDGTKFNGVEDEWDKFENFQD 63
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD F++ WL CRRVLK NGT+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K+NP+PNF
Sbjct: 64 YDNFSKKWLGECRRVLKKNGTIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKKTNPVPNF 123
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
G+RF N+HET++W S K+ TFNY +K N D Q +S W IP+C+G+ERL++++G
Sbjct: 124 SGKRFCNSHETILWCSKDKKS-KITFNYKTMKYLNGDKQEKSVWEIPLCTGNERLKDEEG 182
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLH TQKPE LL +IL+S TKP DI+LDPFFG+GT+GAVA + R++IGIE ++ YI
Sbjct: 183 NKLHSTQKPEKLLYKILISMTKPNDIVLDPFFGTGTTGAVAVETGRNYIGIEREEKYIKA 242
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A KRIAS + +T L + P+V LVE+G ++ Q L N+ G V ++G
Sbjct: 243 AEKRIAS-KIYQKNMITELLLEVKPPKVPLKKLVEKGYLKENQALYNSLGEAKVKVLSNG 301
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELYN 374
+ G E SIH++ AK+ NGW+++Y G+L +N LR KE N
Sbjct: 302 DVFDGNEKLSIHKMSAKILNKTNNNGWDYFYVMNNGKLIPLNDLRYQYAKEFNN 355
>gi|294785907|ref|ZP_06751195.1| modification methylase CcrM [Fusobacterium sp. 3_1_27]
gi|294487621|gb|EFG34983.1| modification methylase CcrM [Fusobacterium sp. 3_1_27]
Length = 370
Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats.
Identities = 167/358 (46%), Positives = 243/358 (67%), Gaps = 2/358 (0%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
I ++ + II+G++I L++LP +S+D IFADPPY +Q G+L R D + V D WD
Sbjct: 1 MDINKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWD 60
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
KF F+ YD FT+ WL C+RVLK + T+ VIGS+ NI+R+G ++Q+L +WILNDI+W+K
Sbjct: 61 KFKDFKDYDNFTKKWLKECKRVLKKDATIAVIGSFQNIYRVGNIMQDLGYWILNDIIWKK 120
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+NP+PNF G+RF N+HET++W S + K+ TFNY +K N + Q +S W I +C+G+E
Sbjct: 121 TNPVPNFSGKRFCNSHETILWCSKNKKS-KITFNYKTMKYLNNEKQEKSIWEISLCTGNE 179
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
RL++++G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE
Sbjct: 180 RLKDENGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEK 239
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
++ Y++ A KRIAS +T LT + P+V L+E+G +Q Q L N+ G
Sbjct: 240 EKVYVEAAEKRIASKN-YQRSLITELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGERK 298
Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V DG + G E SIH++ AK+ NGW+++Y + G L S+N LR KE
Sbjct: 299 GIVLEDGKIFDGIETLSIHKMSAKLLNKANNNGWDYFYIIEKGNLISLNDLRYRYDKE 356
>gi|237745127|ref|ZP_04575608.1| modification methylase HinfI [Fusobacterium sp. 7_1]
gi|229432356|gb|EEO42568.1| modification methylase HinfI [Fusobacterium sp. 7_1]
Length = 370
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 168/358 (46%), Positives = 243/358 (67%), Gaps = 2/358 (0%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
I ++ + II+G++I L++LP +S+D IFADPPY +Q G+L R D + V D WD
Sbjct: 1 MDINKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWD 60
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
KF F+ YD FT+ WL C+RVLK + T+ VIGS+ NI+R+G ++Q+L +WILNDI+W+K
Sbjct: 61 KFKDFKDYDDFTKKWLKECKRVLKKDATIAVIGSFQNIYRVGNIMQDLGYWILNDIIWKK 120
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+NP+PNF G+RF N+HET++W S + K+ TFNY +K N + Q +S W I +C+G+E
Sbjct: 121 TNPVPNFSGKRFCNSHETILWCSKNKKS-KITFNYKTMKYLNNEKQEKSIWEISLCTGNE 179
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
RL++K+G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE
Sbjct: 180 RLKDKNGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEK 239
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
++ Y++ A KRIAS +T LT + P+V L+E+G +Q Q L N+ G
Sbjct: 240 EKVYVEAAEKRIASKN-YQRSLITELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGEKK 298
Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V DG + G E SIH++ AK+ NGW+++Y + G L S+N LR KE
Sbjct: 299 GIVLEDGNIFDGIETLSIHKMSAKLLNKTNNNGWDYFYIIEKGNLISLNDLRYRYDKE 356
>gi|283953787|ref|ZP_06371318.1| hypothetical protein C414_000010156 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794828|gb|EFC33566.1| hypothetical protein C414_000010156 [Campylobacter jejuni subsp.
jejuni 414]
Length = 359
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 160/354 (45%), Positives = 226/354 (63%), Gaps = 2/354 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KD I +GN + +L+ +P KS+DLIFADPPY +Q G+L R + + V D WDKF S +
Sbjct: 3 KDIIFQGNCLEILKTIPDKSIDLIFADPPYFMQTQGELLRTNGEVFSGVNDDWDKFESLK 62
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD F + WL CRR+LK + ++WVIGS+ NIFR+G ++Q+L FWILNDI+W K NP+PN
Sbjct: 63 AYDDFCKIWLSECRRILKDDASIWVIGSFQNIFRLGYIMQDLGFWILNDIIWNKPNPVPN 122
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F+G RF N+HETLIW S + YTFNY +K N + Q +S W I IC G+ERL+ D
Sbjct: 123 FKGTRFCNSHETLIWCSKHKNS-KYTFNYKTMKFLNNNKQEKSIWNIGICIGNERLKGID 181
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K+H TQKPE LL +I++SSTK GD+ILDPFFG+GT+GA+AKKL R +IGIE ++ Y+
Sbjct: 182 GKKIHSTQKPEILLEKIILSSTKKGDLILDPFFGTGTTGAIAKKLGRYYIGIEQEKFYVK 241
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
IA RI + + N +T + P+V+ L+ G + + + N +
Sbjct: 242 IAESRIRQINIIDNE-ITRNELETKPPKVSLEELLNAGFLSENEKFYDKNKNYICYLVNG 300
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
+ E+ SIH++ AK E NGW+++Y K SI++LR + +
Sbjct: 301 NKVSDENEILSIHKMAAKYLNKENHNGWSYFYIFKNENFISIDSLRYEYKNFIN 354
>gi|237741481|ref|ZP_04571962.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
gi|260497889|ref|ZP_05816008.1| DNA methylase [Fusobacterium sp. 3_1_33]
gi|229429129|gb|EEO39341.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
gi|260196555|gb|EEW94083.1| DNA methylase [Fusobacterium sp. 3_1_33]
Length = 370
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 168/358 (46%), Positives = 244/358 (68%), Gaps = 2/358 (0%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
I ++ + II+G++I L++LP +S+D IFADPPY +Q G+L R D + V D WD
Sbjct: 1 MDINKFINTIIEGDTIKNLKRLPDESIDFIFADPPYYMQTEGELLRVDGTKFKGVEDKWD 60
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
KF F+ YD FT+ WL C+RVLK + T+ VIGS+ NI+RIG ++Q+L +WILNDI+W+K
Sbjct: 61 KFKDFKDYDDFTKKWLKECKRVLKKDATIAVIGSFQNIYRIGNIMQDLGYWILNDIIWKK 120
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+NP+PNF G+RF N+HET++W S + K+ TFNY +K N + Q +S W I +C+G+E
Sbjct: 121 TNPVPNFSGKRFCNSHETILWCSKNKKS-KITFNYKTMKYLNNEKQEKSIWEISLCTGNE 179
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
RL++++G KLH +QKPE LL ++L+S+TKP DIILDPFFG+GT+GAVAK++ R++IGIE
Sbjct: 180 RLKDENGNKLHSSQKPEKLLYKLLISATKPKDIILDPFFGTGTTGAVAKEIGRNYIGIEK 239
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
++ Y++ A KRIAS +T LT + P+V L+E+G +Q Q L N+ G
Sbjct: 240 EKVYVEAAEKRIASKN-YQRSLVTELTLEEKPPKVPVKKLLEKGYLQKNQELYNSLGERK 298
Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V DG + G E+ SIH++ AK+ NGW+++Y + G L S+N LR KE
Sbjct: 299 GIVLEDGNIFDGIEILSIHKMSAKLLNKANNNGWDYFYIIEKGNLISLNDLRYRYNKE 356
>gi|296126404|ref|YP_003633656.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
12563]
gi|296018220|gb|ADG71457.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
12563]
Length = 360
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 166/353 (47%), Positives = 232/353 (65%), Gaps = 2/353 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
I + K+ IIKG+++ L+K+P S+DLIFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 IDDIKNTIIKGDALEELKKIPDDSIDLIFADPPYYMQTEGELLRTNGTKFSGVDDEWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+FE YD F+ WL CRRVLK G++WVIGS+ NIFRIG ++Q+L FWILNDI+W K+N
Sbjct: 64 KNFEDYDNFSINWLKECRRVLKITGSIWVIGSFQNIFRIGKIMQDLGFWILNDIIWSKTN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G RF NAHETLIW K YTFNY +K N D Q +S W I +C+G+ERL
Sbjct: 124 PVPNFGGTRFCNAHETLIWCGK-NKNTKYTFNYKTMKHLNNDKQDKSIWNISLCTGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++KDG K+H TQKPE LL ++++SS+KP DI+LDPFFG+GT+GAVAK+L R++IGIE +
Sbjct: 183 KDKDGNKVHSTQKPEELLFKVILSSSKPNDIVLDPFFGTGTTGAVAKRLSRNYIGIERED 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A RI + L L + P+V L+E+G ++ Q+L + +G+
Sbjct: 243 KYIYYAKDRIKNTNVEMTD-LINLDYEVKPPKVPIKNLIEKGYLKVNQVLYSKKGDEVCK 301
Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
+ +G + + SIH++ AK+ NGWN++Y + SI+ LR +
Sbjct: 302 LNENGNVENELGNFSIHQMSAKLQNLSKYNGWNYFYIYYKDKFISIDELRYIY 354
>gi|322379181|ref|ZP_08053573.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
HS1]
gi|322379987|ref|ZP_08054255.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
HS5]
gi|321147576|gb|EFX42208.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
HS5]
gi|321148383|gb|EFX42891.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter suis
HS1]
Length = 357
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 154/349 (44%), Positives = 232/349 (66%), Gaps = 3/349 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I++GN + +L+ LP++SVD IFADPPY +Q G+L R + + V ++WD+F F
Sbjct: 5 NTILQGNCLDILKDLPSQSVDFIFADPPYFMQTQGELLRVGGARFEGVQETWDQFKDFAH 64
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD F+ WL CRR+LK G++ VIGS+ NI+R+G ++QNL FWI+NDI+W K+NP+PNF
Sbjct: 65 YDDFSCLWLAQCRRLLKNRGSICVIGSFQNIYRLGYLMQNLGFWIINDIIWHKTNPVPNF 124
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
G R NAHE ++W + KA +TFNY LK+ N++ Q +S W IP+C+GSERL+N++G
Sbjct: 125 TGSRLCNAHEIILWCAKDKKA-SFTFNYKTLKSLNQNKQEKSVWFIPLCTGSERLKNQEG 183
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLHPTQKPE LL ++++ +TKP D+ILDPFFG+GT+GA+AKKL RSF+GIE + YI
Sbjct: 184 NKLHPTQKPEQLLEKLILMATKPHDLILDPFFGTGTTGAMAKKLGRSFLGIEKNEIYIKA 243
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A +RI + + + L ++ P+V+ +L++ G ++ G L + V ADG
Sbjct: 244 AQRRIEQITISQD-AMAYLELEKKPPKVSMKVLIDTGYLKIGDKLYSPDYQEKCQVLADG 302
Query: 321 TLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
+ ++ SIH++ AK+ NGW+++Y + + S+N LR
Sbjct: 303 KVCDASGQVLSIHKMSAKILNKINHNGWDYFYIKDGMQFISLNQLRYCY 351
>gi|261838917|gb|ACX98682.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori 52]
Length = 359
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 DSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P+V +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLGLETKPPKVPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISG-TELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENHETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|317013139|gb|ADU83747.1| adenine specific DNA methyltransferase [Helicobacter pylori
Lithuania75]
Length = 359
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SFE YD F WL C+R+LK NG++ VIGS+HNIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + TFNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPE LL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEVLLKKIILSATKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNDTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358
>gi|332672842|gb|AEE69659.1| modification methylase BabI [Helicobacter pylori 83]
Length = 359
Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats.
Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+RVLK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|15612336|ref|NP_223989.1| type II DNA modification (methyltransferase [Helicobacter pylori
J99]
gi|4155885|gb|AAD06856.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats.
Identities = 165/357 (46%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P KSVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SFE YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDIVW KSN
Sbjct: 64 GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + TFNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDVQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMDRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ S + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNSTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358
>gi|308064128|gb|ADO06015.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori Sat464]
Length = 359
Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats.
Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+RVLK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|217034428|ref|ZP_03439841.1| hypothetical protein HP9810_11g10 [Helicobacter pylori 98-10]
gi|216943098|gb|EEC22572.1| hypothetical protein HP9810_11g10 [Helicobacter pylori 98-10]
Length = 359
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+RVLK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDTQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|207091630|ref|ZP_03239417.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori HPKX_438_AG0C1]
Length = 359
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 161/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + TFNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSTTKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L +
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358
>gi|254779898|ref|YP_003058004.1| Type II m6A methylase [Helicobacter pylori B38]
gi|254001810|emb|CAX30048.1| Type II m6A methylase [Helicobacter pylori B38]
Length = 359
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 161/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD +FADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFVFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+HNIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + TFNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DI+LDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDARGKKVHSTQKPEALLKKIILSATKPKDIVLDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L +
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358
>gi|108563725|ref|YP_628041.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
gi|107837498|gb|ABF85367.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
Length = 359
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 165/357 (46%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P KSVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SFE YDAF WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFEEYDAFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ S + + +T L + P++ +LL+ + L++ G L +
Sbjct: 243 FYIKEAAKRLNSAR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNRTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358
>gi|261837505|gb|ACX97271.1| type II m6A methylase [Helicobacter pylori 51]
Length = 359
Score = 325 bits (832), Expect = 8e-87, Method: Composition-based stats.
Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSVTKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|317014745|gb|ADU82181.1| type II DNA modification (methyltransferase) [Helicobacter pylori
Gambia94/24]
Length = 359
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 164/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P KSVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SFE YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDIVW KSN
Sbjct: 64 GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + TFNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAIKRLNNAR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358
>gi|208435249|ref|YP_002266915.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
gi|208433178|gb|ACI28049.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
Length = 359
Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats.
Identities = 164/357 (45%), Positives = 225/357 (63%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P KSVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+HNIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFHNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + TFNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPE LL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEVLLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI ATKR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEATKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNRTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358
>gi|307638026|gb|ADN80476.1| adenine specific DNA methyltransferase [Helicobacter pylori 908]
gi|325996628|gb|ADZ52033.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
gi|325998218|gb|ADZ50426.1| adenine specific DNA methyltransferase [Helicobacter pylori 2017]
Length = 359
Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats.
Identities = 165/357 (46%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P KSVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNAIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SFE YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDIVW KSN
Sbjct: 64 GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + TFNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ S + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNSAR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358
>gi|308062636|gb|ADO04524.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori Cuz20]
Length = 359
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+RVLK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNGKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|297380534|gb|ADI35421.1| Modification methylase [Helicobacter pylori v225d]
Length = 359
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+RVLK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAEKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|188528141|ref|YP_001910828.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori Shi470]
gi|188144381|gb|ACD48798.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori Shi470]
Length = 359
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 163/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+RVLK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLVLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|317179845|dbj|BAJ57631.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
Length = 359
Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats.
Identities = 161/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNGKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRHFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKCLNKANHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|308183462|ref|YP_003927589.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori PeCan4]
gi|308065647|gb|ADO07539.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori PeCan4]
Length = 359
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 162/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+RVLK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRVLKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ S + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNSTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +++
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQRD 358
>gi|317176855|dbj|BAJ54644.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
Length = 359
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 162/357 (45%), Positives = 224/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSSSKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|15645965|ref|NP_208144.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori 26695]
gi|2314521|gb|AAD08395.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori 26695]
Length = 359
Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats.
Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDYWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YDAF WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDAFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVAFNYKTMKYLNNDKQEKSVWQIPICMGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L +
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLETKPPKIPMSLLISKQLLKIGDFLYSPNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358
>gi|317181339|dbj|BAJ59123.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
Length = 359
Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats.
Identities = 161/357 (45%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEVAKRLNNTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +KE
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKE 358
>gi|315453389|ref|YP_004073659.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
gi|315132441|emb|CBY83069.1| adenine specific DNA methylase [Helicobacter felis ATCC 49179]
Length = 351
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/349 (47%), Positives = 232/349 (66%), Gaps = 3/349 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
DKI++GN + +L LP++SVDLI ADPPY +Q G L R + + V +WD+F S +
Sbjct: 2 LDKILQGNCLELLPTLPSESVDLIIADPPYFMQTQGDLLRDNGEVFMGVRAAWDQFESLQ 61
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AYD+F AWL CRRVLK +G++WV+GS+ NI+R+G ++QNL FWILNDI+W K NP+PN
Sbjct: 62 AYDSFCLAWLSECRRVLKAHGSIWVMGSFQNIYRLGYLMQNLGFWILNDIIWAKPNPVPN 121
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
FRG RF NAHE+L+W + K+ YTFNY +KA N + Q RS W I IC G+ERL+ D
Sbjct: 122 FRGSRFCNAHESLLWCAK-DKSARYTFNYKTMKALNHNKQERSIWHISICMGAERLKGAD 180
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+KLHPTQKP+ALL +I++SS+KPGD+ILDPFFG+GT+GA+AKK +R F+GIE ++
Sbjct: 181 RKKLHPTQKPQALLEKIILSSSKPGDLILDPFFGTGTTGAIAKKFKRHFLGIEQDPLFVQ 240
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
ATKRIA++ PL N + + + P+V+ L + G +Q Q + + N + D
Sbjct: 241 EATKRIANITPLSNPFIE-ASLEIKPPKVSLKQLCKAGFLQEKQKFYDKEQNYICYLLED 299
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
L E SIH++ AK + NGW ++Y GE S++ LR
Sbjct: 300 -RLHDHQEHLSIHQMAAKHLHKKNHNGWTYFYVFWQGEFVSVDLLRYAY 347
>gi|315586043|gb|ADU40424.1| site-specific DNA-methyltransferase (adenine-specific)
[Helicobacter pylori 35A]
Length = 359
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 160/357 (44%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q +L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPDRSVDFIFADPPYFMQTERELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF+ YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFKEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P+PNF G+R NAHETLIW + + +FNY +K N D Q +S W IPIC G+ERL
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKHKNS-KVSFNYKTMKYLNNDKQEKSVWQIPICIGNERL 182
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT+GAVAK + R FIGIE
Sbjct: 183 KDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMNRYFIGIEKDS 242
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
YI A KR+ + + + +T L + P++ +LL+ + L++ G L ++
Sbjct: 243 FYIKEAAKRLNNTR-DKSDFITNLDLEAKPPKIPMSLLISKQLLKIGDFLYSSNKEKICQ 301
Query: 316 VCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKE 371
V +G + SIH++ AK NGW F+Y + ++ LR + +K+
Sbjct: 302 VLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQNQFLLLDELRYICQKD 358
>gi|315453204|ref|YP_004073474.1| Adenine specific DNA methyltransferase [Helicobacter felis ATCC
49179]
gi|315132256|emb|CBY82884.1| Adenine specific DNA methyltransferase [Helicobacter felis ATCC
49179]
Length = 356
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 162/354 (45%), Positives = 234/354 (66%), Gaps = 3/354 (0%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I++G+ ++L+ L + SVD IFADPPY +Q +G+L R + V + WDKF F
Sbjct: 3 NTILQGDCAALLKTLSSSSVDFIFADPPYFMQTSGELLRVGGTKFAGVAEEWDKFKDFAH 62
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD+F AWL C+RVLK NG++ VIGS+ NI+R+G ++Q+L FW++NDI+W KSNP+PNF
Sbjct: 63 YDSFCEAWLTECKRVLKTNGSICVIGSFQNIYRLGALMQDLGFWVINDIIWAKSNPVPNF 122
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
G R NAHETL+W + KA +TFNY LKA N D Q +S W IP+C G+ERL++K G
Sbjct: 123 NGSRLCNAHETLLWCAKDKKA-SFTFNYKTLKALNGDKQEKSIWEIPLCVGAERLKDKQG 181
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLHPTQKPE LL ++L+ +T+PGD++LDPFFG+GT+GAVAK+L R+F+GIE +YI
Sbjct: 182 HKLHPTQKPEKLLEKLLLMATRPGDLVLDPFFGTGTTGAVAKRLGRNFLGIEQDSNYIQA 241
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
A RI + P+ + L ++ P+V LV+ G +Q GQ+L + G V G
Sbjct: 242 ALARIKNT-PIKMNAFSRLECEKKPPKVPMKTLVDLGYLQVGQVLCSPSGVEQCQVLQSG 300
Query: 321 TLIS-GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKELY 373
+ + SIH++ AK+ NGW+++Y + G+L ++N LR L K+ +
Sbjct: 301 QVQDSSGAVLSIHKMSAKILKKINHNGWDYFYTKHEGQLTALNDLRYLYDKDNH 354
>gi|330813680|ref|YP_004357919.1| modification methylase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486775|gb|AEA81180.1| modification methylase [Candidatus Pelagibacter sp. IMCC9063]
Length = 350
Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats.
Identities = 178/299 (59%), Positives = 233/299 (77%), Gaps = 2/299 (0%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
+NS +K+KI++GNSI +L+K+P ++ DL+FADPPYNLQL+ L RPD+S VDAV D W
Sbjct: 2 KNSKNPYKNKILQGNSIEILKKIPDETFDLVFADPPYNLQLDKSLERPDNSKVDAVDDQW 61
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D+FSSF+AYD FT WL CRRVLK NGT+WVIGSYHNIFR+G +Q+LNFWILND+VW
Sbjct: 62 DQFSSFKAYDLFTNQWLRECRRVLKKNGTIWVIGSYHNIFRVGKEIQDLNFWILNDVVWN 121
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K NPMPNF+G RF NAHETLIWA+ K+ YTFNY++LK N+D Q+RSDW + ICSG+
Sbjct: 122 KRNPMPNFKGTRFTNAHETLIWAAKEQKS-KYTFNYNSLKCFNDDKQLRSDWELAICSGN 180
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
ER + K+G K H TQKPEALL R+++S+T D+ILDPFFG+GT+GAVAKKL R+F+GIE
Sbjct: 181 ERCK-KNGTKAHSTQKPEALLYRVILSTTNKDDLILDPFFGTGTTGAVAKKLGRNFLGIE 239
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
++ YI++A KRI ++P+ + L + KR E R+ F +LVE G+I+PG L + + N
Sbjct: 240 KEKKYIEVAKKRIDKIRPIEDEYLKTIQKKRNEKRIPFGMLVESGIIEPGISLYDNKKN 298
>gi|183508442|ref|ZP_02689152.2| DNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|182675852|gb|EDT87757.1| DNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
Length = 363
Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats.
Identities = 148/359 (41%), Positives = 212/359 (59%), Gaps = 5/359 (1%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDK 74
+K+KI+ G + ++++LP K+ D F DPPY LQ N +LYR + + + D WDK
Sbjct: 1 MNYKNKILVGETTLIMKELPEKTFDFCFTDPPYFLQTNENKKLYRVEGTKYEGTNDEWDK 60
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F S E+Y FT+ WL R+LK +GT+ VI I+ IG +L+ L FWI+NDI+W+KS
Sbjct: 61 FDSIESYKKFTKCWLSEVMRLLKDDGTICVISGMQTIYEIGNILKELGFWIINDIIWQKS 120
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
NP PNF G R N+HETLIWA S + YTFNY K N QM S W +CSG+ER
Sbjct: 121 NPTPNFMGSRLNNSHETLIWAKKSKNS-KYTFNYKTGKYLNNGKQMGSVWNFSVCSGNER 179
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
L++++G KLH TQKPE+LL RI+ TK GD++LDPF G+ T+ AVAKK R+F IE
Sbjct: 180 LKDENGLKLHNTQKPESLLYRIITLFTKKGDLVLDPFGGTMTTAAVAKKTGRNFTMIEKD 239
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
+ Y+ RI ++ + ++ RV+ ++ G + G+ N+ G +
Sbjct: 240 EKYVKYGLARINNISAKIGVVENSFFDQK-PIRVSMFEMISDGYFKLGEYFINSNGEKAK 298
Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNFWYFEKLGELHSINTLRILVRKEL 372
A+G L E+ S+H V AK+ G E N +N+ + E+ GE+ SIN +R R+ L
Sbjct: 299 LAKANGWLEYQGEINSMHEVAAKMIGRERRVNAFNYLFVERDGEIISINKIRENYRQHL 357
>gi|38906136|gb|AAR27819.1| adenine DNA methyltransferase [Staphylococcus sp. L1]
Length = 350
Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats.
Identities = 157/350 (44%), Positives = 223/350 (63%), Gaps = 5/350 (1%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS-WDKF 75
+ + I++G+ I L+ + + S+DLIFADPPYN+Q+ G+L R + S + V++ WDKF
Sbjct: 3 NNYINSILQGDCIEKLKLIESNSIDLIFADPPYNMQIQGELTRVNGSSFNGVSNESWDKF 62
Query: 76 SSFEAYDAFTRAWLLACRRVLK-PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S +AY F R WL+ C+R+LK N ++W+IGSY NI IG +LQ L FW++NDI+W+KS
Sbjct: 63 DSIKAYKDFCRKWLIECQRILKSKNSSIWIIGSYQNIHIIGDLLQELGFWLINDIIWKKS 122
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
NP PNFRG +F NA ETL+WA+PS K YTFNY +K N QM S W IP+ SGSER
Sbjct: 123 NPTPNFRGTKFTNAQETLLWATPSKKT-KYTFNYKTMKNINNGKQMTSIWKIPVASGSER 181
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
L++ +G KLH TQKPE LL I++SSTK GD ILDPF G+GT+ ++KKL R++IGIE
Sbjct: 182 LKDVEGNKLHQTQKPEKLLYNIIISSTKKGDTILDPFLGTGTTATISKKLGRNYIGIEQD 241
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
+ YI A +RI + + + + + K+ RV F LVE G I + + A
Sbjct: 242 KKYIHYAEQRIKNQVVIDDDYVNAVFDKK-LIRVPFKKLVEEGFIDKNEYIYFNNTEEYA 300
Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTL 364
+ D L+ + SIH + + G E NGWN+WY ++ +++ +L
Sbjct: 301 VISDDKELLYNGK-HSIHSLAGILKGLERANGWNYWYVKRNNKIYFYRSL 349
>gi|294155798|ref|YP_003560182.1| adenine-specific DNA modification methyltransferase [Mycoplasma
crocodyli MP145]
gi|291599976|gb|ADE19472.1| adenine-specific DNA modification methyltransferase [Mycoplasma
crocodyli MP145]
Length = 375
Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats.
Identities = 149/371 (40%), Positives = 213/371 (57%), Gaps = 16/371 (4%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
E K+ +I +SI ++ L S+DLIFADPPY ++ G L R + + D D WDKF+
Sbjct: 1 MELKNILINDDSIEYMKSLDENSIDLIFADPPYWMRTTGTLKRVEGTNFDGCNDEWDKFN 60
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S + Y FT+ WL+ C+R+LK +G+++VIG I+ IG ++Q L+FW++NDI+W KSNP
Sbjct: 61 SLKDYKEFTKKWLIECKRILKKDGSIFVIGGMQCIYTIGAIMQELDFWLINDIIWHKSNP 120
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------EDVQMRSDW 184
PNF+G R N+HET+IWA+ S K+ TFNY K N E QM S W
Sbjct: 121 TPNFKGTRLNNSHETIIWAAKSIKS-KVTFNYKTAKELNNENIEISKFTKGERKQMGSVW 179
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
PICSG ERL++++ KLH TQKPEALL RI+ S+K GD ILDPF G+ T+GA+AKK+
Sbjct: 180 KFPICSGLERLKDEEYNKLHSTQKPEALLYRIIAISSKIGDTILDPFAGTMTTGAMAKKM 239
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
R+ I IE Y KR+ + L + + V F L+ + ++ G
Sbjct: 240 GRNCIMIEKDLKYFTHGKKRVDFTKMLIGDIEKSIFDNKPTK-VHFKDLISKNYLKVGDK 298
Query: 305 LTNAQGNISATVCADGTLISGTELGSIHRVGAKV--SGSETCNGWNFWYFEKLGELHSIN 362
TN + AT+ DG L E+ IH AK ++ NG+++WY + L +N
Sbjct: 299 FTNLSNDDYATLRDDGKLYYNNEVLDIHTCAAKFANKNADRINGFDYWYVVRNNHLVFLN 358
Query: 363 TLRILVRKELY 373
+R RK++
Sbjct: 359 DIREKARKDIE 369
>gi|313678807|ref|YP_004056547.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
bovis PG45]
gi|312950107|gb|ADR24702.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
bovis PG45]
Length = 374
Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats.
Identities = 146/366 (39%), Positives = 211/366 (57%), Gaps = 17/366 (4%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II + I L++LP S+DLIFADPPY ++ + L R + + + V D WDKF S E
Sbjct: 7 NIIINADCIDALKQLPDNSIDLIFADPPYWMRTSNTLLRVEGTKFNGVEDEWDKFESNED 66
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y FT+ WL C RVLK NG+ WVIG I+ IG ++Q L FWI+ND++W K+NP PNF
Sbjct: 67 YAKFTKNWLSECYRVLKKNGSFWVIGGMQCIYTIGGIMQELGFWIINDVIWHKTNPTPNF 126
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN---------EDVQMRSDWLIPICSG 191
+G R QN+HETLIWA+ + + YTFNY K N Q+ S W I + +G
Sbjct: 127 KGTRLQNSHETLIWATKNQ-SSKYTFNYKTAKELNINVADYNKGNRKQLGSVWSISVVNG 185
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ERL++ +G KLH TQKPE LL +I+ S+K DI+LDPF G+ T+G VAK+ R +I I
Sbjct: 186 NERLKDNEGIKLHSTQKPEELLYKIINISSKINDIVLDPFAGTMTTGKVAKQTGRKYIMI 245
Query: 252 EMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ- 309
E + Y T RI + + +G+IEL K +V ++E + G+
Sbjct: 246 EQDEKYCHYGTNRIEKTKEKIGDIELATFDIK--PLKVGLKDMIENSFLHIGEQFYLKNI 303
Query: 310 GNISATVCADGTLISGT-ELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLRI 366
+ + + +DG L + IH A++S + NG+++WY + +L SIN +R
Sbjct: 304 NHKNVYLNSDGKLTDDNGQTLDIHSGAAQLSNKKAHRVNGFDYWYVIRENKLVSINEIRE 363
Query: 367 LVRKEL 372
L R+ L
Sbjct: 364 LYREHL 369
>gi|257456468|ref|ZP_05621664.1| DNA methylase [Treponema vincentii ATCC 35580]
gi|257446128|gb|EEV21175.1| DNA methylase [Treponema vincentii ATCC 35580]
Length = 372
Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats.
Identities = 143/366 (39%), Positives = 206/366 (56%), Gaps = 19/366 (5%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
II GN I L+K+ A S++LIFADPPY ++++G L R + + D D WD +F S +
Sbjct: 5 TIINGNCIEELKKIEANSINLIFADPPYWMRVSGVLKRVEGTDYDGCADEWDNQFESLDD 64
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y FTR WL C RVL PNG++WVIG I+ IG +Q + +W++NDI+W K+NP PNF
Sbjct: 65 YIEFTRNWLKECYRVLSPNGSMWVIGGMQCIYSIGNAMQEIGYWLINDIIWYKTNPTPNF 124
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------VQMRSDWLIPI 188
G R N+HETLIWA+ S KA YTF+Y K N D QM S W P+
Sbjct: 125 MGTRLNNSHETLIWATKSQKA-KYTFHYKTAKELNTDTVLVSDYEKGIRKQMGSIWRFPV 183
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
CSG+ER+++ G+KLH TQKP ALL RI+ + GD +LDPF G+ T+GA A + R+F
Sbjct: 184 CSGNERIKDDAGKKLHSTQKPFALLYRIVAICSNIGDTVLDPFGGTFTTGAAAIQCGRNF 243
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
IGI+ + Y KR++ + + + T +V F L++ + P +
Sbjct: 244 IGIDASELYCKYGEKRLSETKEMIGN-IEKATFDIKPIKVDFIDLIKNNFLLPDEKFFLK 302
Query: 309 QGNISATVCADGTLI--SGTELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTL 364
+ A + +DG + S + IH+ A + + NG++FWY E+ + SI +
Sbjct: 303 NSDSFAILKSDGKIELPSKNIVTDIHKGAAILGNKKAARVNGFDFWYVERNNKRKSIKDI 362
Query: 365 RILVRK 370
R RK
Sbjct: 363 REDYRK 368
>gi|291320655|ref|YP_003515920.1| modification methylase [Mycoplasma agalactiae]
gi|290752991|emb|CBH40967.1| Modification methylase [Mycoplasma agalactiae]
Length = 374
Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats.
Identities = 142/366 (38%), Positives = 210/366 (57%), Gaps = 17/366 (4%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II + I L+K+P S+DLIFADPPY ++ + L+R + + + V D WDKF S +
Sbjct: 7 NVIINADCIEALKKIPDNSIDLIFADPPYWMRTSKTLFRVEGTKFNGVEDEWDKFDSNDD 66
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y FT+ WL C RVLKPNG+ WVIG I+ IG ++Q+L FWI+ND++W K+NP PNF
Sbjct: 67 YVQFTKKWLSECHRVLKPNGSFWVIGGMQCIYTIGGLMQDLGFWIINDVIWHKTNPTPNF 126
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN---------EDVQMRSDWLIPICSG 191
+G R QN+HETLIWA+ + K+ YTFNY K N Q+ S W I + +G
Sbjct: 127 KGTRLQNSHETLIWATKNQKS-KYTFNYKTAKELNINVADYNKGNRKQLGSVWSISVVNG 185
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
SERL++ +G KLH TQKPE LL +I+ ++K DI+LDPF G+ T+G +AK+ R +I I
Sbjct: 186 SERLKDNEGLKLHSTQKPEELLYKIININSKINDIVLDPFAGTMTTGKIAKQTGRKYIMI 245
Query: 252 EMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ- 309
E + Y RI + + +G+IEL K +V ++ + G+
Sbjct: 246 EQDEKYCHYGANRIEKTKEKIGDIELATFDIK--PLKVDLKDMINDNFLHLGEQFYLKNI 303
Query: 310 GNISATVCADGTLISGTEL-GSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLRI 366
+ + + +DG L E IH A + + NG+N+W+ + + SI+ +R
Sbjct: 304 NHKNVYLNSDGKLTDDNEEVHDIHSKAALLLNKKASRVNGFNYWHVMRDNRIVSIDEIRN 363
Query: 367 LVRKEL 372
L R+ L
Sbjct: 364 LYREYL 369
>gi|148377930|ref|YP_001256806.1| modification methylase [Mycoplasma agalactiae PG2]
gi|148291976|emb|CAL59368.1| Modification methylase [Mycoplasma agalactiae PG2]
Length = 376
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 144/366 (39%), Positives = 212/366 (57%), Gaps = 17/366 (4%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II + I L+ LP S+DLIFADPPY ++ + L+R + + + V D WDKF S +
Sbjct: 7 NVIINADCIEALKVLPDNSIDLIFADPPYWMRTSKTLFRVEGTKFNGVEDEWDKFDSNDD 66
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y FT+ WL C RVLKPNG+ WVIG I+ IG ++Q+L FWI+ND++W K+NP PNF
Sbjct: 67 YVQFTKKWLSECHRVLKPNGSFWVIGGMQCIYTIGGLMQDLGFWIINDVIWHKTNPTPNF 126
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV---------QMRSDWLIPICSG 191
+G R QN+HETLIWA+ + K+ YTFNY K N +V Q+ S W I + +G
Sbjct: 127 KGTRLQNSHETLIWATKNQKS-KYTFNYKTAKELNINVADYNKGSRNQLGSVWSISVVNG 185
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
SERL++ +G KLH TQKPE LL +I+ S+K DI+LDPF G+ T+G +AK+ R +I I
Sbjct: 186 SERLKDNEGLKLHSTQKPEELLYKIINISSKINDIVLDPFAGTMTTGKIAKQTGRKYIMI 245
Query: 252 EMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ- 309
E + Y RI + + +G+IEL V K +V ++ + G+
Sbjct: 246 EQDEKYCHYGANRIEKTKEKIGDIELAVFDIK--PLKVGLKDMINDNFLHLGEQFYLKNI 303
Query: 310 GNISATVCADGTLISGT-ELGSIHRVGAKVSGSET--CNGWNFWYFEKLGELHSINTLRI 366
+ + + +DG L E+ IH A + + NG+++W + + SI+ +R
Sbjct: 304 NHKNVYLNSDGKLTDDNGEVHDIHSKAALLLNKKASRVNGFDYWNVMRDNRIVSIDEIRN 363
Query: 367 LVRKEL 372
L R+ L
Sbjct: 364 LYREYL 369
>gi|83682424|emb|CAJ31338.1| hypothetical protein [Helicobacter pylori]
Length = 315
Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats.
Identities = 146/316 (46%), Positives = 197/316 (62%), Gaps = 3/316 (0%)
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
L R + + V D WDKF SFE YD F WL C+R+LK NG++ VIGS+ NIFRIG
Sbjct: 1 LKRFEGTKFQGVEDHWDKFGSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGF 60
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
LQNL FWILNDIVW KSNP+PNF G+R NAHETLIW + + TFNY +K N
Sbjct: 61 HLQNLGFWILNDIVWHKSNPVPNFAGKRLCNAHETLIWCAKHKNS-KVTFNYKTMKYLNN 119
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D Q +S W IPIC G+ERL++ G+K+H TQKPEALL +I++S+TKP DIILDPFFG+GT
Sbjct: 120 DKQEKSVWQIPICMGNERLKDAQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGT 179
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
+GAVAK + R FIGIE YI A KR+ S + + +T L + P++ +LL+ +
Sbjct: 180 TGAVAKSMNRYFIGIEKDSFYIKEAAKRLNSAR-DKSDFITNLDLETKPPKIPMSLLISK 238
Query: 297 GLIQPGQILTNAQGNISATVCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFWYFEKL 355
L++ G L ++ V +G + SIH++ AK NGW F+Y
Sbjct: 239 QLLKIGDFLYSSNKERICQVLENGQVRDNENYETSIHKMSAKYLNKTNHNGWKFFYAYYQ 298
Query: 356 GELHSINTLRILVRKE 371
+ ++ LR + +++
Sbjct: 299 NQFLLLDELRYICQRD 314
>gi|218661107|ref|ZP_03517037.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli IE4771]
Length = 252
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 171/226 (75%), Positives = 206/226 (91%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
PD SLVDAV D WD+F+SFEAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G
Sbjct: 27 TVPDQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGAT 86
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
LQ+LNFWILNDI+WRK+NPMPNF+GRRFQNAHET+IWASP+ KAKGYTFNYDA+KAAN+D
Sbjct: 87 LQDLNFWILNDIIWRKTNPMPNFKGRRFQNAHETMIWASPNAKAKGYTFNYDAMKAANDD 146
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
VQMRSDWL PIC+G+ERL+ +DG+K+HPTQKPEALL+R++++STKPGDI+LDPFFGSGT+
Sbjct: 147 VQMRSDWLFPICNGNERLKGEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTT 206
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
GAVAK+L F+G+E +QDYID A+ IA+V+PLG ELTV+TGK+
Sbjct: 207 GAVAKRLGCKFVGMEREQDYIDAASASIAAVEPLGKAELTVMTGKK 252
>gi|13542231|ref|NP_111919.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
Length = 278
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 111/270 (41%), Positives = 163/270 (60%), Gaps = 2/270 (0%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LY 58
M + S IN + + E KD ++ G+S+ ++ ++ DLIF DPPY LQ+ +
Sbjct: 1 MPIEKSSRINGGKMNREEVKDSVLLGDSLEIMRRIDDCIYDLIFLDPPYYLQMTPKRLKR 60
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ S+ V + WD F SFEAYD+F + L +R++ T+W IG+YHNIFRIG ++
Sbjct: 61 WNNRSVPQTVREYWDAFPSFEAYDSFISSVLKEAKRLMSDTSTIWAIGTYHNIFRIGKIM 120
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
Q++ FWILND+VW K+NPMPN+ G RF N+ ETLIWA+ + K YT+N + K
Sbjct: 121 QDMGFWILNDVVWIKTNPMPNWLGVRFTNSTETLIWATKGKEQKNYTYNRNLAKEFGLGK 180
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ W++ G+ER+R+++ + +HP QKP L+ RI++SSTK GD+ILDPF G GT+G
Sbjct: 181 TANNVWVMKTSRGNERVRDENRKSVHPAQKPLELMKRIILSSTKEGDLILDPFAGVGTTG 240
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
A L R+F IE Y R +
Sbjct: 241 VAASMLGRNFTLIEKDPVYYRAMLSRFSRF 270
>gi|14325665|dbj|BAB60568.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
Length = 265
Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 107/257 (41%), Positives = 157/257 (61%), Gaps = 2/257 (0%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDS 71
+ E KD ++ G+S+ ++ ++ DLIF DPPY LQ+ + + S+ V +
Sbjct: 1 MNREEVKDSVLLGDSLEIMRRIDDCIYDLIFLDPPYYLQMTPKRLKRWNNRSVPQTVREY 60
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
WD F SFEAYD+F + L +R++ T+W IG+YHNIFRIG ++Q++ FWILND+VW
Sbjct: 61 WDAFPSFEAYDSFISSVLKEAKRLMSDTSTIWAIGTYHNIFRIGKIMQDMGFWILNDVVW 120
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
K+NPMPN+ G RF N+ ETLIWA+ + K YT+N + K + W++ G
Sbjct: 121 IKTNPMPNWLGVRFTNSTETLIWATKGKEQKNYTYNRNLAKEFGLGKTANNVWVMKTSRG 180
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ER+R+++ + +HP QKP L+ RI++SSTK GD+ILDPF G GT+G A L R+F I
Sbjct: 181 NERVRDENRKSVHPAQKPLELMKRIILSSTKEGDLILDPFAGVGTTGVAASMLGRNFTLI 240
Query: 252 EMKQDYIDIATKRIASV 268
E Y R +
Sbjct: 241 EKDPVYYRAMLSRFSRF 257
>gi|160940911|ref|ZP_02088251.1| hypothetical protein CLOBOL_05803 [Clostridium bolteae ATCC
BAA-613]
gi|158436155|gb|EDP13922.1| hypothetical protein CLOBOL_05803 [Clostridium bolteae ATCC
BAA-613]
Length = 265
Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats.
Identities = 106/248 (42%), Positives = 152/248 (61%), Gaps = 6/248 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ G+ + +L K+ +SVD+IFADPPY L NG + +V SWD+ F+
Sbjct: 19 KLYLGDCLELLRKMKPESVDMIFADPPYFLSNNG-ITCQGGRMVSVNKASWDEGGDFKEN 77
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
AF R W+ CRRVLKP GT+W+ G+ HNI+ IG LQ + I+N+I W+K+NP PN
Sbjct: 78 HAFNRRWIRMCRRVLKPGGTIWISGTLHNIYSIGMALQQERYKIINNITWKKTNPPPNLA 137
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ ET++WA K + FNY+ +K N QM+ G+ ++
Sbjct: 138 CRCFTHSTETILWARKDEKKARHLFNYEQMKQMNGGKQMKDV-----WEGNLTRPSEKWA 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKPE LL RI+++STK GD++LDPF GSGT+G V+ K R FIGI+ ++Y+DIA
Sbjct: 193 GRHPTQKPEYLLERIILASTKKGDVVLDPFCGSGTTGVVSGKYGRQFIGIDNNEEYLDIA 252
Query: 262 TKRIASVQ 269
+R+ +Q
Sbjct: 253 KRRLDQIQ 260
>gi|298346767|ref|YP_003719454.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
43063]
gi|298236828|gb|ADI67960.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
curtisii ATCC 43063]
Length = 274
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 99/244 (40%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I + L+ + +SVD+IFADPPY L +G + V WDK
Sbjct: 17 KLILADVFDALKNIEEQSVDMIFADPPYFLSNDG-ISCSGGKQVSVNKGDWDKGLPLSEK 75
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F R W+ C+RVLK +G++W+ G++HNI+ IG L+ F ILN+I W+K NP PN
Sbjct: 76 HEFNRHWIRECKRVLKLDGSIWISGTFHNIYSIGFALEQERFKILNNITWQKLNPPPNLG 135
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ ET+IWA + FNY +K N+ QM+ G+ +N+
Sbjct: 136 CRCFTHSTETVIWARKDENKAKHKFNYGLMKELNDGKQMKDV-----WQGTLTPKNEKAF 190
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKPE LL RI+++ST GD++LDPF GSGT+ VA +L RS IGI+ +Y++IA
Sbjct: 191 GKHPTQKPEYLLERIILASTNEGDLVLDPFVGSGTTVVVANRLGRSGIGIDNNTEYLEIA 250
Query: 262 TKRI 265
KR+
Sbjct: 251 KKRL 254
>gi|315655312|ref|ZP_07908212.1| modification methylase BabI [Mobiluncus curtisii ATCC 51333]
gi|315490252|gb|EFU79877.1| modification methylase BabI [Mobiluncus curtisii ATCC 51333]
Length = 266
Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats.
Identities = 101/244 (41%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I + LE L +S+D+IFADPPY L +G + V WDK
Sbjct: 17 KLILADVFDALENLEEQSIDMIFADPPYFLSNDG-ISCSGGKQVSVNKGDWDKGLPLSEK 75
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F R W+ C+RVLK +G++W+ G++HNI+ IG+ L+ F ILN+I W+K NP PN
Sbjct: 76 HEFNRHWIRECKRVLKRDGSIWISGTFHNIYSIGSALEQERFKILNNITWQKLNPPPNLG 135
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ ET+IWA K + FNY +K N+ QM+ G+ +N+
Sbjct: 136 CRCFTHSTETVIWARKDEKKAKHKFNYGLMKELNDGKQMKDV-----WQGTLTPKNEKAF 190
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKPE LL RI+++ST GD++LDPF GSGT+ VA +L RS IGI+ +Y++IA
Sbjct: 191 GKHPTQKPEYLLERIILASTNEGDLVLDPFVGSGTTVVVANRLGRSGIGIDNNPEYLEIA 250
Query: 262 TKRI 265
KR+
Sbjct: 251 KKRL 254
>gi|329119746|ref|ZP_08248425.1| modification methylase DpnIIB [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464141|gb|EGF10447.1| modification methylase DpnIIB [Neisseria bacilliformis ATCC
BAA-1200]
Length = 269
Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats.
Identities = 97/250 (38%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ ++++V+ K+ P D+IFADPPY L NG + +V WDK
Sbjct: 27 LYHEDALTVMRKILDKHPEGCFDMIFADPPYFLSNNG-FTCQNGQMVSVNKGGWDKSQGM 85
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G+ HNI+ +G ++Q++ + ILN+I W K NP P
Sbjct: 86 AADMEFYEEWLRLCYALLKPNGTIWVCGTQHNIYLVGYLMQSVGYHILNNITWEKPNPPP 145
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N R F ++ ETL+WA + K +TF+Y +KA N QM+S W + + +E+ K
Sbjct: 146 NLSCRFFTHSTETLLWAKKN-KTAKHTFHYKVMKAQNGGKQMKSVWQLTPPNKTEKTHGK 204
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP ALL R +++++ GD++ DPF GSGT+GA A K R F G E ++++
Sbjct: 205 -----HPTQKPLALLERCILAASNIGDLVFDPFAGSGTTGAAALKHGRRFCGCEKEEEFF 259
Query: 259 DIATKRIASV 268
++A KR+ +
Sbjct: 260 ELAKKRLKND 269
>gi|269976527|ref|ZP_06183512.1| DNA methylase [Mobiluncus mulieris 28-1]
gi|269935328|gb|EEZ91877.1| DNA methylase [Mobiluncus mulieris 28-1]
Length = 277
Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 101/249 (40%), Positives = 149/249 (59%), Gaps = 6/249 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I G++ +L ++ SVD+IFADPPY L G + V +WD+ E
Sbjct: 23 RIFLGDAFEILARIAQSSVDMIFADPPYFLSNGG-ISCSGGRQVSVNKGAWDRGMGTEEK 81
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F R W+ C+RVLK +G++WV G++HNI+ +G L+ F ILN+I W+K NP PN
Sbjct: 82 HGFNRRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLA 141
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ ET+IWA + + + F+Y +K N QM+ W + SE++ K
Sbjct: 142 CRCFTHSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK--- 198
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKPE LL RI+++ST+ GD++LDPF GSGT+ VAK+L R IGI+ ++Y++IA
Sbjct: 199 --HPTQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIDSVEEYLEIA 256
Query: 262 TKRIASVQP 270
KR+A
Sbjct: 257 GKRLAQTAK 265
>gi|291551270|emb|CBL27532.1| DNA modification methylase [Ruminococcus torques L2-14]
Length = 574
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 77/382 (20%), Positives = 149/382 (39%), Gaps = 45/382 (11%)
Query: 19 WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---- 71
W +KI G+++ V+ L + +DLI+ DPP++ + + + + A++D+
Sbjct: 50 WINKIFWGDNLQVMSHLLKEYRGKIDLIYIDPPFDSKADYKKKIKMKNTGTALSDTSTFE 109
Query: 72 ---WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWIL 126
+ + + Y F + R +L G+L+V +H + + +L +
Sbjct: 110 EKQYGDIWTNDEYLQFMYERFILIRELLSERGSLYVHCDWHKVHHLRMVLDEVFGPSNFR 169
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA------------ 174
N+++W ++ + H+ +++ S S +
Sbjct: 170 NEVIWWYLWGGRG--KTQWNSKHDNILFYSKSDNWTFNYMDVLDEHTLMTEGSKNRLNYA 227
Query: 175 ---------NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
N ++ + ++ +PTQKPE LLS+I+++S+ PGD
Sbjct: 228 GAMVTTKSENSEIPQDKVLPSDTWYIATINAMAKEKENYPTQKPEELLSKIILASSNPGD 287
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT- 284
I+ D F GSGT+ AVA KL R FIG ++ I TKR+ +V N L
Sbjct: 288 IVFDCFMGSGTTQAVAMKLGRRFIGADINLGSIQTTTKRLINVANELNESLQDDEKYIGF 347
Query: 285 EPRVAFNLLVERGLIQPGQILTNA------QGNISATVCADGTLISGTELGSIHRVGAKV 338
E N R ++ ++ A + DG ++ ++ ++R+ K
Sbjct: 348 EVYNVNNYDFFRNPVEARDLIIQALEIQPFPQSDVWDGELDGRMV---KIMPVNRIATKA 404
Query: 339 SGSETCNGWNFWYFEKLGELHS 360
E + +EK +
Sbjct: 405 DLEELKANLPYKTYEKRKAENP 426
>gi|290580993|ref|YP_003485385.1| putative adenine-specific DNA methylase [Streptococcus mutans
NN2025]
gi|254997892|dbj|BAH88493.1| putative adenine-specific DNA methylase [Streptococcus mutans
NN2025]
Length = 257
Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats.
Identities = 105/251 (41%), Positives = 155/251 (61%), Gaps = 8/251 (3%)
Query: 19 WKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+K+K ++ ++ LEK+ ++S+D+IFADPPY L G ++ WDK +
Sbjct: 7 YKNKTILVHADTFQFLEKMKSESIDMIFADPPYFLSNGG-FSNSGGQVISVDKGDWDKAA 65
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E F R W+ ++VLK NGT+W+ GS HNI+ +G L+ F ILN+I W+K+NP
Sbjct: 66 SLEEKHEFNRRWIRLAKKVLKSNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNP 125
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+PN R F ++ ET++WA + K + +NYD +K N+ QM+ +GS +
Sbjct: 126 VPNLSCRYFTHSTETILWARKNDKKSKHYYNYDLMKKINDGKQMKDV-----WTGSLTKK 180
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++ HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAKKL R FIGI+ +++
Sbjct: 181 SEKWAGKHPTQKPEYLLERIILASTKKGDYILDPFVGSGTTGVVAKKLGRRFIGIDSERE 240
Query: 257 YIDIATKRIAS 267
Y+ IA R+
Sbjct: 241 YLRIARTRLER 251
>gi|148998713|ref|ZP_01826151.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
SP11-BS70]
gi|149006496|ref|ZP_01830195.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
SP18-BS74]
gi|168491835|ref|ZP_02715978.1| DNA methylase [Streptococcus pneumoniae CDC0288-04]
gi|168574962|ref|ZP_02720925.1| DNA methylase [Streptococcus pneumoniae MLV-016]
gi|169832858|ref|YP_001695216.1| DNA methylase [Streptococcus pneumoniae Hungary19A-6]
gi|194398425|ref|YP_002038438.1| DNA adenine methyltransferase DpnII [Streptococcus pneumoniae G54]
gi|225857437|ref|YP_002738948.1| DNA methylase [Streptococcus pneumoniae P1031]
gi|225859611|ref|YP_002741121.1| DNA methylase [Streptococcus pneumoniae 70585]
gi|307068464|ref|YP_003877430.1| DNA modification methylase [Streptococcus pneumoniae AP200]
gi|307128045|ref|YP_003880076.1| DNA methylase [Streptococcus pneumoniae 670-6B]
gi|147755407|gb|EDK62456.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
SP11-BS70]
gi|147761794|gb|EDK68757.1| putative adenine-specific DNA methylase [Streptococcus pneumoniae
SP18-BS74]
gi|168995360|gb|ACA35972.1| DNA methylase [Streptococcus pneumoniae Hungary19A-6]
gi|183573905|gb|EDT94433.1| DNA methylase [Streptococcus pneumoniae CDC0288-04]
gi|183578786|gb|EDT99314.1| DNA methylase [Streptococcus pneumoniae MLV-016]
gi|194358092|gb|ACF56540.1| DNA adenine methyltransferase DpnII [Streptococcus pneumoniae G54]
gi|225720270|gb|ACO16124.1| DNA methylase [Streptococcus pneumoniae 70585]
gi|225724476|gb|ACO20328.1| DNA methylase [Streptococcus pneumoniae P1031]
gi|301794813|emb|CBW37269.1| DNA methylase [Streptococcus pneumoniae INV104]
gi|306410001|gb|ADM85428.1| DNA modification methylase [Streptococcus pneumoniae AP200]
gi|306485107|gb|ADM91976.1| DNA methylase [Streptococcus pneumoniae 670-6B]
gi|332073000|gb|EGI83481.1| DNA methylase family protein [Streptococcus pneumoniae GA17545]
gi|332201259|gb|EGJ15330.1| DNA methylase family protein [Streptococcus pneumoniae GA47901]
Length = 256
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 109/252 (43%), Positives = 154/252 (61%), Gaps = 8/252 (3%)
Query: 20 KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K+K+I ++ L K+ +S+D+IFADPPY L G + +V WDK SS
Sbjct: 8 KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISS 66
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
FE F R W+ + VLKPNGT+W+ GS HNI+ +G L+ F ILN+I W+K+NP
Sbjct: 67 FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 126
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA + K + +NYD +K N+ QM+ +GS +
Sbjct: 127 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGSLTKKV 181
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 182 EKWAGKHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 241
Query: 258 IDIATKRIASVQ 269
+ IA KR+ +
Sbjct: 242 LKIARKRLEAEN 253
>gi|241888632|ref|ZP_04775939.1| DNA methylase [Gemella haemolysans ATCC 10379]
gi|241864655|gb|EER69030.1| DNA methylase [Gemella haemolysans ATCC 10379]
Length = 258
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 110/248 (44%), Positives = 157/248 (63%), Gaps = 6/248 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G++ V+EK+ ++S+D+IFADPPY L +G +V WDK SSFE
Sbjct: 11 TLALGDTFEVIEKIKSESIDMIFADPPYFLSNDG-FSNSGGKVVSVNKGDWDKISSFEEK 69
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F R W+ +RVLKPNGT+W+ G+ HNI+ +G L+ F ILN+I W+K+NP PN
Sbjct: 70 HNFNREWIRKAKRVLKPNGTIWISGTLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLS 129
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ ET++WA + K + +NYD +K N QM+ W P+ SE+ K
Sbjct: 130 CRYFTHSTETILWARKADKYARHYYNYDLMKEINNGKQMKDVWTGPLTKISEKWAGK--- 186
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKPE LL RI+++ST+ GD +LDPF GSGT+G VAK+L R F GI+ K++Y+DIA
Sbjct: 187 --HPTQKPEYLLERIILASTEEGDYVLDPFVGSGTTGVVAKRLGRKFAGIDFKEEYLDIA 244
Query: 262 TKRIASVQ 269
+R+ +V
Sbjct: 245 KRRLEAVN 252
>gi|24378989|ref|NP_720944.1| putative adenine-specific DNA methylase [Streptococcus mutans
UA159]
gi|24376880|gb|AAN58250.1|AE014896_6 putative adenine-specific DNA methylase [Streptococcus mutans
UA159]
Length = 269
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 106/251 (42%), Positives = 155/251 (61%), Gaps = 8/251 (3%)
Query: 19 WKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+K+K ++ ++ LEK+ ++S+D+IFADPPY L G +V WDK +
Sbjct: 19 YKNKTILVHADTFQFLEKMKSESIDMIFADPPYFLSNGG-FSNSGGQVVSVDKGDWDKAA 77
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E F R W+ ++VLK NGT+W+ GS HNI+ +G L+ F ILN+I W+K+NP
Sbjct: 78 SLEEKHEFNRRWIRLAKKVLKSNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNP 137
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+PN R F ++ ET++WA + K + +NYD +K N+ QM+ +GS +
Sbjct: 138 VPNLSCRYFTHSTETILWARKNDKKSKHYYNYDLMKKINDGKQMKDV-----WTGSLTKK 192
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++ HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAKKL R FIGI+ +++
Sbjct: 193 SEKWAGKHPTQKPEYLLERIILASTKKGDYILDPFVGSGTTGVVAKKLGRRFIGIDSERE 252
Query: 257 YIDIATKRIAS 267
Y+ IA R+
Sbjct: 253 YLRIARTRLER 263
>gi|332199870|gb|EGJ13945.1| DNA methylase family protein [Streptococcus pneumoniae GA41317]
Length = 256
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 109/252 (43%), Positives = 155/252 (61%), Gaps = 8/252 (3%)
Query: 20 KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K+K+I ++ L K+ +S+D+IFADPPY L G + +V WDK SS
Sbjct: 8 KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISS 66
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
FE F R W+ + VLKPNGT+W+ GS HNI+ +G +L+ F ILN+I W+K+NP
Sbjct: 67 FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMVLEQEGFKILNNITWQKTNPA 126
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA + K + +NYD +K N+ QM+ +GS +
Sbjct: 127 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGSLTKKV 181
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 182 EKWAGKHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 241
Query: 258 IDIATKRIASVQ 269
+ IA KR+ +
Sbjct: 242 LKIARKRLEAEN 253
>gi|127389|sp|P09358|MTD22_STRPN RecName: Full=Modification methylase DpnIIB; Short=M.DpnIIB;
AltName: Full=Adenine-specific methyltransferase DpnIIB;
AltName: Full=M.DpnII 2
gi|6978344|gb|AAA88581.2| DNA adenine methyltransferase [Streptococcus pneumoniae]
Length = 268
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 109/252 (43%), Positives = 154/252 (61%), Gaps = 8/252 (3%)
Query: 20 KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K+K+I ++ L K+ +S+D+IFADPPY L G + +V WDK SS
Sbjct: 20 KNKMILVHSDTFKFLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISS 78
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
FE F R W+ + VLKPNGT+W+ GS HNI+ +G L+ F ILN+I W+K+NP
Sbjct: 79 FEEKHEFNRKWIRLAKEVLKPNGTVWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPA 138
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA + K + +NYD +K N+ QM+ +GS +
Sbjct: 139 PNLSCRYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGSLTKKV 193
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y
Sbjct: 194 EKWAGKHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEY 253
Query: 258 IDIATKRIASVQ 269
+ IA KR+ +
Sbjct: 254 LKIARKRLEAEN 265
>gi|322375761|ref|ZP_08050273.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C300]
gi|321279469|gb|EFX56510.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C300]
Length = 270
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 105/246 (42%), Positives = 151/246 (61%), Gaps = 6/246 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ +L K+ +S+D+IFADPPY L G + +V WDK SSFE
Sbjct: 25 LVHADTFKLLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISSFEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R W+ + VLKPNGT+W+ GS HNI+ +G L+ F ILN+I W+K+NP PN
Sbjct: 84 EFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA + K + +NYD +K N+ QM+ +G+ + +
Sbjct: 144 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGALTKKAEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA
Sbjct: 199 KHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAK 258
Query: 263 KRIASV 268
+RI
Sbjct: 259 QRIERE 264
>gi|325204847|gb|ADZ00301.1| Modification methylase LlaDCHIB [Neisseria meningitidis M01-240355]
Length = 269
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 100/249 (40%), Positives = 147/249 (59%), Gaps = 11/249 (4%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IFADPPY L +G + +V +WDK
Sbjct: 28 LYNENSLNVMRKILEKYPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N R F ++ ET++WA + KA +TF+Y+ +KA N+ QM+ W P + +E+ K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D+
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260
Query: 259 DIATKRIAS 267
++A KR+
Sbjct: 261 ELAKKRLEK 269
>gi|307705510|ref|ZP_07642364.1| modification methylase DpnIIB [Streptococcus mitis SK597]
gi|307620968|gb|EFO00051.1| modification methylase DpnIIB [Streptococcus mitis SK597]
Length = 253
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 6/244 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ +L K+ +S+D+IFADPPY L G + +V WDK SSFE
Sbjct: 13 LVHADTFKLLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISSFEEKH 71
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R W+ + VLKPNGT+W+ GS HNI+ +G L+ F ILN+I W+K+NP PN
Sbjct: 72 EFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 131
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA + K + +NYD +K N+ QM+ +G+ + +
Sbjct: 132 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGALTKKAEKWAG 186
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA
Sbjct: 187 KHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAR 246
Query: 263 KRIA 266
KR+
Sbjct: 247 KRLE 250
>gi|238022785|ref|ZP_04603211.1| hypothetical protein GCWU000324_02696 [Kingella oralis ATCC 51147]
gi|237865988|gb|EEP67124.1| hypothetical protein GCWU000324_02696 [Kingella oralis ATCC 51147]
Length = 262
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 102/251 (40%), Positives = 141/251 (56%), Gaps = 11/251 (4%)
Query: 21 DKIIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
I N++ V+ ++ P D+IFADPPY L G + +V WDK
Sbjct: 19 HIIYHENALLVMRRILDKYPNGCFDMIFADPPYFLSNGG-FTCQNGQMVSVNKGDWDKSQ 77
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
A AF WL C +LKPNG++WV G++HNI+ IG ++Q L + ILN+I W K NP
Sbjct: 78 GMAADMAFYEEWLGLCYALLKPNGSIWVCGTHHNIYLIGYLMQTLGYHILNNITWEKPNP 137
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
PN R F ++ ETL+WA K +TF YD +KA N QM+S W I + SE+
Sbjct: 138 PPNLSCRFFTHSTETLLWAKKG-KRAKHTFQYDVMKAQNGGKQMKSVWQIAPPAASEKTL 196
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPTQKP ALL R + +++ P D I DPF GSGT+G A K R+F G E+ +
Sbjct: 197 GK-----HPTQKPLALLERCIQAASNPNDWIFDPFMGSGTTGVAALKHGRNFCGCEINDE 251
Query: 257 YIDIATKRIAS 267
+ ++A KR+ +
Sbjct: 252 FFELAKKRLQT 262
>gi|163753955|ref|ZP_02161078.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
gi|161326169|gb|EDP97495.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
Length = 596
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 84/400 (21%), Positives = 162/400 (40%), Gaps = 60/400 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDH 62
+ W +KI G+++ V+ L + VDLI+ DPP++ ++L G+ +
Sbjct: 55 EEVNGWMNKIFWGDNLQVMSHLLKEYRGKVDLIYIDPPFDSKADYKRKIELKGKKIENNR 114
Query: 63 SLVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + TD W + ++Y F ++ + +L GT++V Y I + ++
Sbjct: 115 TSFEEKQYTDIW----TNDSYLQFIYERVILLKELLSDKGTIYVHADYRKIHYLQLIMDE 170
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD----------- 169
+ + G F H+ ++ S + + +
Sbjct: 171 IFGASNFRNEIIWCYTGASNVGSDFPKKHDNILRYSKTGNYVFFKDSIRIPYAEGSLDRA 230
Query: 170 --------ALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSS 220
+ + ++ +R GEK +PTQK + LL RIL +S
Sbjct: 231 NRNVIGTGGMNFESIELNANGKVPEDFWVDIQRAARYPGEKTGYPTQKSKKLLERILKAS 290
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ-----PLGNIE 275
+KPGDI+ D F GSGT+ AVA +L R FIG ++ I+ TKR+ + + +++
Sbjct: 291 SKPGDIVFDCFMGSGTTQAVAMELGRKFIGADINLGAIETTTKRLNISREKITSKVPDVD 350
Query: 276 LTVLTGKRTEPRVAF---------NLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
T G+ + + + N V R +Q +IL + + + T+ G
Sbjct: 351 FTNEDGETEKIKDFYTGFSVYNVNNYDVFRNPVQAKEIL---KQALEIQPLPNNTIYDGE 407
Query: 327 ------ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
++ ++R+ + +E +G+N+ F+K E
Sbjct: 408 KDGRMVKIMPVNRIATRADLNELISGFNYKSFQKKFEKQP 447
>gi|322372954|ref|ZP_08047490.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C150]
gi|321277996|gb|EFX55065.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. C150]
Length = 270
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 105/253 (41%), Positives = 153/253 (60%), Gaps = 8/253 (3%)
Query: 19 WKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+KDK ++ ++ L+K+ +S+D+IFADPPY L G +V WDK
Sbjct: 7 YKDKAILVHADTFEFLKKIKPESMDMIFADPPYFLSNGG-FSNSGGKVVSVNKGDWDKID 65
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ E F R W+ ++VLKPNGT+WV GS+HNI+ +G L+ F ILN+I W+K+NP
Sbjct: 66 TLEEKHDFNRNWIRLAKKVLKPNGTIWVSGSFHNIYSVGMALEQEGFKILNNITWQKTNP 125
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
PN R F ++ ET++WA + K + +NY+ +K N QM+ +G+ +
Sbjct: 126 APNLSCRYFTHSTETVLWARKNDKKAKHYYNYELMKELNGGKQMKDV-----WTGALTKK 180
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ HPTQKPE LL RI+++STKP D ILDPF GSGT+G VAK+L R FIGI+ ++D
Sbjct: 181 AEKWAGKHPTQKPEYLLERIILASTKPNDYILDPFVGSGTTGVVAKRLGRYFIGIDSEKD 240
Query: 257 YIDIATKRIASVQ 269
Y+ IA R+ +
Sbjct: 241 YLKIAQARLEREK 253
>gi|289167373|ref|YP_003445642.1| DNA adenine methyltransferase, (adenine-specific methyltransferase
DpnIIB) [Streptococcus mitis B6]
gi|322377535|ref|ZP_08052026.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. M334]
gi|288906940|emb|CBJ21774.1| DNA adenine methyltransferase, (adenine-specific methyltransferase
DpnIIB) [Streptococcus mitis B6]
gi|321281735|gb|EFX58744.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sp. M334]
Length = 263
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 6/244 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ +L K+ +S+D+IFADPPY L G + +V WDK SSFE
Sbjct: 25 LVHADTFKLLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISSFEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R W+ + VLKPNGT+W+ GS HNI+ +G L+ F ILN+I W+K+NP PN
Sbjct: 84 EFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA + K + +NYD +K N+ QM+ +G+ + +
Sbjct: 144 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGALTKKAEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA
Sbjct: 199 KHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAK 258
Query: 263 KRIA 266
KR+
Sbjct: 259 KRLE 262
>gi|225076901|ref|ZP_03720100.1| hypothetical protein NEIFLAOT_01952 [Neisseria flavescens
NRL30031/H210]
gi|224951787|gb|EEG32996.1| hypothetical protein NEIFLAOT_01952 [Neisseria flavescens
NRL30031/H210]
Length = 271
Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 100/250 (40%), Positives = 147/250 (58%), Gaps = 11/250 (4%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IFADPPY L +G + +V +WDK
Sbjct: 28 LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N R F ++ ET++WA + KA +TF+Y+ +KA N+ QM+ W P + +E+ K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNDGKQMKCVWTFPPPNKTEKTFGK 205
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D+
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHDRKFCGCELEEDFF 260
Query: 259 DIATKRIASV 268
++A KR+
Sbjct: 261 ELAKKRLQQK 270
>gi|322392398|ref|ZP_08065859.1| modification methylase BabI [Streptococcus peroris ATCC 700780]
gi|321144933|gb|EFX40333.1| modification methylase BabI [Streptococcus peroris ATCC 700780]
Length = 265
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 6/244 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ +L K+ +S+D+IFADPPY L G + +V WDK SSFE
Sbjct: 25 LVHSDTFKLLSKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKISSFEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R W+ + VLKPNGT+W+ GS HNI+ +G L+ F ILN+I W+K+NP PN
Sbjct: 84 EFNRKWIRLAKEVLKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA + K + +NYD +K N+ QM+ +G+ + +
Sbjct: 144 RYFTHSTETILWARKNDKKARHYYNYDLMKELNDGKQMKDV-----WTGALTKKAEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK GD ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA
Sbjct: 199 KHPTQKPEYLLERIILASTKEGDYILDPFVGSGTTGVVAKRLGRRFIGIDAEKEYLKIAK 258
Query: 263 KRIA 266
KR+
Sbjct: 259 KRLE 262
>gi|223932377|ref|ZP_03624380.1| DNA methylase N-4/N-6 domain protein [Streptococcus suis 89/1591]
gi|330831883|ref|YP_004400708.1| DNA adenine methylase M.SsuMB [Streptococcus suis ST3]
gi|223899058|gb|EEF65416.1| DNA methylase N-4/N-6 domain protein [Streptococcus suis 89/1591]
gi|329306106|gb|AEB80522.1| DNA adenine methylase M.SsuMB [Streptococcus suis ST3]
Length = 259
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 103/251 (41%), Positives = 149/251 (59%), Gaps = 8/251 (3%)
Query: 20 KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K+K ++ ++ L K+ +S+D+IFADPPY L G + +V WDK S
Sbjct: 8 KNKAILVHADTFEFLNKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKVDS 66
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E F R W+ + VLKPNGT+W+ GS+HNI+ +G L+ F ILN+I W+K+NP
Sbjct: 67 LEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPA 126
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA K + +NY+ +K N+ QM+ G ++
Sbjct: 127 PNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDV-----WVGGLTKKS 181
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY
Sbjct: 182 EKWAGKHPTQKPEYLLERIILASTQEGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDY 241
Query: 258 IDIATKRIASV 268
+ IA R+
Sbjct: 242 LKIARTRLDKE 252
>gi|12082202|dbj|BAB20829.1| DNA adenine methylase M.SsuMB [Streptococcus suis]
gi|15281320|dbj|BAB63414.1| DNA adenine methylase M.Ssu11318IB [Streptococcus suis]
gi|15281326|dbj|BAB63419.1| DNA adenine methylase M.Ssu4961IB [Streptococcus suis]
gi|15281332|dbj|BAB63424.1| DNA adenine methylase M.Ssu8074IB [Streptococcus suis]
gi|15281338|dbj|BAB63429.1| DNA adenine methylase M.Ssu2479IB [Streptococcus suis]
Length = 271
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 103/251 (41%), Positives = 149/251 (59%), Gaps = 8/251 (3%)
Query: 20 KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K+K ++ ++ L K+ +S+D+IFADPPY L G + +V WDK S
Sbjct: 20 KNKAILVHADTFEFLNKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKVDS 78
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E F R W+ + VLKPNGT+W+ GS+HNI+ +G L+ F ILN+I W+K+NP
Sbjct: 79 LEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPA 138
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA K + +NY+ +K N+ QM+ G ++
Sbjct: 139 PNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDV-----WVGGLTKKS 193
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY
Sbjct: 194 EKWAGKHPTQKPEYLLERIILASTQEGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDY 253
Query: 258 IDIATKRIASV 268
+ IA R+
Sbjct: 254 LKIARTRLDKE 264
>gi|14327902|ref|NP_116732.1| LlaDCHIB [Lactococcus lactis]
gi|1709051|sp|P50178|MTL22_LACLC RecName: Full=Modification methylase LlaDCHIB; Short=M.LlaDCHI B;
Short=M.LlaDCHIB; AltName: Full=Adenine-specific
methyltransferase LlaDCHIB; AltName: Full=M.LlaII B
gi|794257|gb|AAB06312.1| LlaDCHIB [Lactococcus lactis]
Length = 269
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 107/245 (43%), Positives = 152/245 (62%), Gaps = 6/245 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ +S +LEK+ +S+D+IFADPPY L G + +V WDK SSFE
Sbjct: 25 LVHADSFKLLEKIKPESMDMIFADPPYFLSNGG-MSNSGGQIVSVDKGDWDKISSFEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R W+ R VLKPNGT+WV GS HNI+ +G L+ F ILN+I W+K+NP PN
Sbjct: 84 DFNRRWIRLARLVLKPNGTIWVSGSLHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA + K + +NY+ +K N+ QM+ +GS +++
Sbjct: 144 RYFTHSTETILWARKNDKKSRHYYNYELMKEFNDGKQMKDV-----WTGSLTKKSEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE +L RI+++STK D ILDPF GSGT+G VAK+L R FIGI+ +++Y+ IA
Sbjct: 199 KHPTQKPEYILERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDSEKEYLKIAK 258
Query: 263 KRIAS 267
KR+
Sbjct: 259 KRLNK 263
>gi|212639015|ref|YP_002315535.1| adenine specific DNA methylase Mod [Anoxybacillus flavithermus WK1]
gi|212560495|gb|ACJ33550.1| Adenine specific DNA methylase Mod [Anoxybacillus flavithermus WK1]
Length = 589
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 95/403 (23%), Positives = 158/403 (39%), Gaps = 76/403 (18%)
Query: 19 WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
W +KI G+++ V+ L + + LI+ DPP++ +Q+ G +SL +
Sbjct: 53 WMNKIFWGDNLQVMSHLLKEFRGKIKLIYIDPPFDSKADYKKRIQVRGNSTVSHNSLFEE 112
Query: 68 --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------ 119
TD W S + Y F L+ R +L +G+++V +H I +L
Sbjct: 113 KQYTDIW----SNDEYLQFLYERLILMRELLAEDGSIFVHTDWHKSHHIRCLLDEVFGDS 168
Query: 120 ---NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--- 173
+I+W S N ++F+ HE + W + S + + +
Sbjct: 169 GDEMKKAGFKGEIIWYFSLIGGN--AKKFEKNHENIYWYTKSSEYIFNKDDVRQPYSKEF 226
Query: 174 ---ANEDVQMRSDWLIPICSGSERLRNKDGEKLHP------------------------- 205
D + R + + E+L K +HP
Sbjct: 227 LEQCKRDEEGRLYYTRGMGRDGEKLNRKHISYIHPLGKAPSDVWTDIKNYSPTGKERLGY 286
Query: 206 -TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
TQKPEAL+ RI+ +++ PGDI+ D F GSGT+ AVA KL R FIG ++ + TKR
Sbjct: 287 PTQKPEALIERIIKAASNPGDIVFDCFMGSGTTQAVAMKLGRRFIGSDINLGAVQTTTKR 346
Query: 265 IASVQPLGNIELTVLTGKR-------TEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
+ ++ T P A LL+E IQP + G +
Sbjct: 347 LLNILREDPDLKTGFEVYNVNNYEFFRNPVQAKELLIEALEIQPLPNNSLYDGEL----- 401
Query: 318 ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
DG ++ ++ +R+ K E +++ FEK E
Sbjct: 402 -DGRMV---KIMPTNRIATKADLGELIQNFDYRLFEKRREERP 440
>gi|325131534|gb|EGC54241.1| DNA methylase [Neisseria meningitidis M6190]
Length = 269
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 99/249 (39%), Positives = 148/249 (59%), Gaps = 11/249 (4%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IF+DPPY L +G + +V +WDK
Sbjct: 28 LYNENSLNVMRKILEKYPNGCFDMIFSDPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N R F ++ ET++WA + KA +TF+Y+ +KA N+ QM+ W P + +E+ K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP +LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D+
Sbjct: 206 -----HPTQKPLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260
Query: 259 DIATKRIAS 267
++A KR+
Sbjct: 261 ELAKKRLEK 269
>gi|121634196|ref|YP_974441.1| putative modification methylase DpnIIB [Neisseria meningitidis
FAM18]
gi|120865902|emb|CAM09638.1| putative Modification methylase DpnIIB [Neisseria meningitidis
FAM18]
gi|325139212|gb|EGC61758.1| Modification methylase LlaDCHIB [Neisseria meningitidis ES14902]
gi|325141587|gb|EGC64053.1| Modification methylase LlaDCHIB [Neisseria meningitidis 961-5945]
gi|325197609|gb|ADY93065.1| Modification methylase LlaDCHIB [Neisseria meningitidis G2136]
Length = 269
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 99/249 (39%), Positives = 147/249 (59%), Gaps = 11/249 (4%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IF+DPPY L +G + +V +WDK
Sbjct: 28 LYNENSLNVMRKILEKYPNGCFDMIFSDPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N R F ++ ET++WA + KA +TF+Y+ +KA N+ QM+ W P + +E+ K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGK 205
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D+
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260
Query: 259 DIATKRIAS 267
++A KR+
Sbjct: 261 ELAKKRLEK 269
>gi|146297740|ref|YP_001181511.1| DNA methylase N-4/N-6 domain-containing protein
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145411316|gb|ABP68320.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 247
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 103/255 (40%), Positives = 139/255 (54%), Gaps = 15/255 (5%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++VL+K+ S+DLIFADPPYNL L V WDK
Sbjct: 6 LFNDDCLNVLKKIEDNSIDLIFADPPYNLSSENALTTRAGKPVKCYKGEWDKIDDI---F 62
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F W+ C RVLK GT+W+ G+ HN IGT+L+ L WI+NDI+W K N P
Sbjct: 63 EFNLRWIEQCVRVLKETGTIWISGTLHNHPIIGTILKQLGLWIINDIIWFKPNATPLLSR 122
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
RF + E + AS + Y F+Y+ + N QMR+ W IP +
Sbjct: 123 NRFVPSTELIWVASKNK---RYYFDYEMARKLNGGKQMRNLWEIPAQR---------HKT 170
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT+KPEALL RI++ +K GD++LDPF GSGT+G VAK L+R+FIGIE+ Y +IA
Sbjct: 171 PHPTEKPEALLERIILIGSKEGDVVLDPFMGSGTTGVVAKLLKRNFIGIEIDPVYFEIAK 230
Query: 263 KRIASVQPLGNIELT 277
KRI +P+ L
Sbjct: 231 KRIEEEKPIQQTFLN 245
>gi|19347659|gb|AAL86021.1| BsmIMA [Geobacillus stearothermophilus]
Length = 275
Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats.
Identities = 103/269 (38%), Positives = 148/269 (55%), Gaps = 10/269 (3%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ EW + I I ++KLP S+DL+ ADPPYNL G+ + + + +W+K
Sbjct: 2 LSEWINTIQNTECIQSMKKLPDNSIDLVIADPPYNLSKGGKWKWDNSKKLVGMGGNWNKV 61
Query: 76 S------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
+FE Y FT +WLL +R+LKP G+LW+ G+YHN+ I + Q L I+N+I
Sbjct: 62 MENWDDMTFEEYWEFTESWLLEVKRILKPTGSLWIFGTYHNMGIINVVCQKLGIEIINEI 121
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--ALKAANEDVQMRSDWLIP 187
+W K N PN GRRF +HET++W K + Y FNY+ + ED+ +
Sbjct: 122 IWYKRNAFPNLSGRRFTASHETILWCHVGQKKREYYFNYEYVKNASFPEDMLKSPGKQMR 181
Query: 188 ICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ KD K HPTQKP LL RI+++++K GDI L PF G G+ AK+L
Sbjct: 182 TVWDIPNNKQKDELKFGKHPTQKPLRLLHRIILATSKEGDICLAPFSGVGSECVAAKELG 241
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNI 274
R+FIG E+ ++Y DI+ KRI S Q
Sbjct: 242 RNFIGFEINKEYYDISLKRIESTQKKIEQ 270
>gi|309801799|ref|ZP_07695917.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
JCVIHMP022]
gi|308221553|gb|EFO77847.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
JCVIHMP022]
Length = 261
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 101/246 (41%), Positives = 151/246 (61%), Gaps = 6/246 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ S+L K+ +SVD+IFADPPY L G + +V WDK +SFEA
Sbjct: 20 LFLGDTFSLLPKMQPESVDMIFADPPYFLSNGG-ISCHSGRMVSVDKGDWDKGASFEAKH 78
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R W+ C+ VL PNGT+W+ G+ HNI+ +G L+ F I+N+I W+K+NP PN
Sbjct: 79 EFNRNWIRLCKTVLAPNGTIWISGTLHNIYSVGVALEQEGFKIINNITWQKTNPPPNLAC 138
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA + + + FNY +K N QM+ +GS + + E
Sbjct: 139 RCFTHSTETVLWAQRNDRCSKHFFNYALMKEMNGGKQMKDV-----WTGSLTPKREKIEG 193
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP LL RI++SST+PGD++LDPF GS T+G A+KL R +IGI+ + +YI+++
Sbjct: 194 KHPTQKPLYLLERIILSSTEPGDLVLDPFCGSSTTGVAAQKLGRKYIGIDNEPEYIELSK 253
Query: 263 KRIASV 268
+R+
Sbjct: 254 RRLQKD 259
>gi|48290858|dbj|BAB63435.2| DNA adenine methylase M.Ssu4109IB [Streptococcus suis]
Length = 271
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 8/256 (3%)
Query: 20 KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K+K ++ ++ L+K+ +S+D+IFADPPY L G + +V WDK +S
Sbjct: 20 KNKAILVHADTFEFLDKMKPESMDMIFADPPYFLSNGG-ISNSGGQVVSVDKGDWDKVNS 78
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E F R W+ + VLKPNGT+W+ GS+HNI+ +G L+ F ILN+I W+K+NP
Sbjct: 79 LEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPA 138
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA K + +NY+ +K N+ QM+ G ++
Sbjct: 139 PNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDV-----WVGGLTKKS 193
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ HPTQKPE LL RI+++ST+ GD ILDPF GSGT+G VAK+L R FIGI+ ++DY
Sbjct: 194 EKWAGKHPTQKPEYLLERIILASTREGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDY 253
Query: 258 IDIATKRIASVQPLGN 273
+ IA R+ N
Sbjct: 254 LKIARTRLDKEDGKKN 269
>gi|295399896|ref|ZP_06809877.1| DNA methylase N-4/N-6 domain protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111585|ref|YP_003989901.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
gi|294978299|gb|EFG53896.1| DNA methylase N-4/N-6 domain protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216686|gb|ADP75290.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
Length = 267
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 109/248 (43%), Positives = 149/248 (60%), Gaps = 7/248 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I GN I L +L SVD+IFADPPY L G + +V WDK S+
Sbjct: 21 LLINGNCIDWLNRLEKNSVDMIFADPPYFLSSGG-ITCHSGKMVSVDKGEWDKPSTLNEI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+F + WL AC+RVLK GT+W+ G+ HNI+ IG L L + ILN+I W K N PN
Sbjct: 80 HSFNKEWLYACKRVLKDGGTIWISGTLHNIYSIGFALNELEYKILNNITWYKKNASPNLS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ ET++WA K Y FNY+ +K N QMR W IP SE+ +
Sbjct: 140 CRYFTHSTETILWARKGKKTSHY-FNYNLMKEMNGGKQMRDVWEIPTTKKSEKAHGR--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP LL RI+++STK DI+LDPF GSGT+G VAKKL R +IGI+++++Y+++
Sbjct: 196 --HPTQKPIELLERIILASTKINDIVLDPFNGSGTTGVVAKKLNRRYIGIDIEKEYLELT 253
Query: 262 TKRIASVQ 269
KR+ + +
Sbjct: 254 IKRLEATE 261
>gi|296314163|ref|ZP_06864104.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
43768]
gi|296839202|gb|EFH23140.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
43768]
Length = 269
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 99/249 (39%), Positives = 145/249 (58%), Gaps = 11/249 (4%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IFADPPY L +G + +V +WDK
Sbjct: 28 LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 146
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N R F ++ ET++WA + KA +TF+Y+ +KA N QM+ W P + +E+ K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK 205
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP LL R ++S++ G +I DPF GSGT+G A K R F G E+++D+
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGHLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260
Query: 259 DIATKRIAS 267
++A KR+
Sbjct: 261 ELAKKRLEK 269
>gi|307701788|ref|ZP_07638802.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
gi|307613046|gb|EFN92301.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
Length = 252
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 101/245 (41%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
G++ +L ++ SVD+IFADPPY L G + V +WDK E F
Sbjct: 2 GDAFEILARIAQSSVDMIFADPPYFLSNGG-ISCSGGRQVSVNKGAWDKGMGTEEKHGFN 60
Query: 86 RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
R W+ C+RVLK +G++WV G++HNI+ +G L+ F ILN+I W+K NP PN R F
Sbjct: 61 RRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLACRCF 120
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
++ ET+IWA + + + F+Y +K N QM+ W + SE++ K HP
Sbjct: 121 THSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK-----HP 175
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKPE LL RI+++ST+ GD++LDPF GSGT+ VAK+L R IGI+ ++Y++IA KR+
Sbjct: 176 TQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIDSVEEYLEIAGKRL 235
Query: 266 ASVQP 270
A
Sbjct: 236 AHTAK 240
>gi|256421531|ref|YP_003122184.1| DNA methylase N-4/N-6 domain protein [Chitinophaga pinensis DSM
2588]
gi|256036439|gb|ACU59983.1| DNA methylase N-4/N-6 domain protein [Chitinophaga pinensis DSM
2588]
Length = 601
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 87/421 (20%), Positives = 158/421 (37%), Gaps = 71/421 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY---RPDHSLVDA 67
+ W +KI G+++ V+ L +D I+ DPPY+ + + + R + +A
Sbjct: 46 KEVKRWMNKIFWGDNLQVMSHLLKDYKGQIDFIYIDPPYDSKADYRKKIKLRGKEVINNA 105
Query: 68 VTDSWDKFS---SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
++ +++ S + Y F L+ R +L G++ + +H + + ++
Sbjct: 106 ISFEEKQYTDIWSNDEYLQFMYERLMLIRELLSDKGSIILQCDWHKVHHLRCIMDEIFGP 165
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA---------------------- 161
+ + + F H+ L++
Sbjct: 166 DNCINEIIWHYKTFQGQTKKYFARKHDNLLFYKKGSDFIYNKLYDTSLENTIDAVRWADY 225
Query: 162 -----------------------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+ Y A++ + + + L K
Sbjct: 226 IDENGRIYGKKMPLQDSRFIRYLNKWKRAYKREPEADDVIYEAKGQPLDSVWDMKGLDPK 285
Query: 199 DGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
EKL +PTQKPE L+ RI++++T G I+ D F GSGT AVA K R FIG ++
Sbjct: 286 SEEKLGYPTQKPEDLMERIILATTNRGSIVFDCFMGSGTVQAVAMKTGRKFIGADINLGA 345
Query: 258 IDIATKRIASVQPLGN---IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA------ 308
+ TKR+ V N ++T TG + F+ V R ++ +IL A
Sbjct: 346 VQTTTKRLLHVAAELNKRKEKITRYTGFQVYNVNHFD--VFRNPLEAKEILIKALEIKPF 403
Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSIN-TLRIL 367
N DG ++S + I+R+ +E +++ FEKL H LR+L
Sbjct: 404 PNNNVYDGKKDGRMVS---IMPINRITTLADLNELIANFDYKAFEKLKSKHPRKPVLRLL 460
Query: 368 V 368
+
Sbjct: 461 L 461
>gi|212639032|ref|YP_002315552.1| DNA modification methylase [Anoxybacillus flavithermus WK1]
gi|212560512|gb|ACJ33567.1| DNA modification methylase [Anoxybacillus flavithermus WK1]
Length = 263
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 104/244 (42%), Positives = 143/244 (58%), Gaps = 7/244 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I+ + + L+ + S+ +IFADPPY L G + +V WDK E D
Sbjct: 21 LIQDDCLRALQYIQPSSIHMIFADPPYFLSNGG-ISCKSGKIVRVDKGEWDKERDREKID 79
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F W+ AC+RVLK +GT+W+ G++HNI +G L L F ILN IVW+K++P PN
Sbjct: 80 EFNYRWIQACKRVLKEDGTIWITGTFHNIHSVGQALHQLGFKILNSIVWQKTDPPPNMSK 139
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++HE +IWA SPK++ Y FNY+A+ N QM W IP E+
Sbjct: 140 RMFTHSHEYIIWAKKSPKSRHY-FNYEAMVKENNGKQMTDVWTIPHVPPHEKTFGN---- 194
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP LL+RI+++STK DIILDPF GSGT+G A L R FIG+E + +I +
Sbjct: 195 -HPTQKPLQLLNRIIIASTKQNDIILDPFCGSGTTGVSALCLNRKFIGMERELSFIQLTK 253
Query: 263 KRIA 266
+RI
Sbjct: 254 RRIQ 257
>gi|325294305|ref|YP_004280819.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064753|gb|ADY72760.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 291
Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats.
Identities = 102/278 (36%), Positives = 151/278 (54%), Gaps = 6/278 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ ++++VL+K+P +SVD++FADPPYNL +G V WD+ FE
Sbjct: 12 RLYLDDALNVLDKIPDESVDMVFADPPYNLSNDG-FTCHAGKRVSVNKGEWDRSQGFEKD 70
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F W+ C+R+LKPNGT+W+ G+YH+I+ G LQ + I+N+I W K N PN
Sbjct: 71 FNFHYQWIEKCKRILKPNGTIWISGTYHSIYLCGFSLQKQGWHIINEICWYKPNASPNLS 130
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYD---ALKAANEDVQMRSDWLIPICSGSERLRNK 198
R F +HETL+WA K +TFNYD + ++ + + + + + +
Sbjct: 131 CRMFTASHETLLWAKKK-KEAKHTFNYDLAKNGSWEEDLLKKPNKQMRSVWAIPTPKKWE 189
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKPE LL RI++ +TKPGDI+LDPF GSGT+G VA + R F+GI+ ++Y+
Sbjct: 190 KRYGKHPTQKPELLLKRIILLTTKPGDIVLDPFCGSGTTGVVAIRYGRRFVGIDFNEEYL 249
Query: 259 -DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
D+A RI I + E N E
Sbjct: 250 KDLAIPRIEDELKAKQINRERFLKEEKEIEYDANNYFE 287
>gi|239616524|ref|YP_002939846.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239505355|gb|ACR78842.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 250
Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats.
Identities = 103/252 (40%), Positives = 136/252 (53%), Gaps = 15/252 (5%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I G+ I L+KL A+SVDLIFADPPYNL L V WDK +
Sbjct: 5 KLILGDCIEELKKLEAESVDLIFADPPYNLSGENHLTVHAGKPVKLDKGEWDKIDNIHE- 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F W+ C RVLKP+GT+W+ G+ HN IG L+ L WI+ND+VW K N P
Sbjct: 64 --FNLNWIKECIRVLKPHGTIWISGTLHNHPSIGMALKQLGLWIINDVVWYKPNATPLLS 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
RF + E + A +K Y FNY+ K N+ QMR+ W ++ K
Sbjct: 122 KNRFVPSTEIIWVAGK---SKKYYFNYELAKEMNKGKQMRNLWT---------IKAKRHI 169
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KPE LL RI++ + D ILDPF GSGT+G VAK+ R+FIGIE+ Q+Y + A
Sbjct: 170 TPHPAEKPEELLERIILIGSNEADTILDPFMGSGTTGVVAKRYNRNFIGIEINQEYFEWA 229
Query: 262 TKRIASVQPLGN 273
+RI +
Sbjct: 230 KERIEKTIVKPS 241
>gi|325696288|gb|EGD38179.1| modification methylase BabI [Streptococcus sanguinis SK160]
Length = 265
Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats.
Identities = 104/247 (42%), Positives = 145/247 (58%), Gaps = 6/247 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ L K+ +S+D+IFADPPY L G ++V WDK S E
Sbjct: 25 LVHADTFDFLSKMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R +LKPNGT+W+ GS HNI+ +G L+ F ILN+I W+KSNP PN
Sbjct: 84 DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA K + +NYD +K N QM+ G + +
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258
Query: 263 KRIASVQ 269
+R+ +
Sbjct: 259 RRLEEER 265
>gi|125718516|ref|YP_001035649.1| modification methylase DpnIIB [Streptococcus sanguinis SK36]
gi|125498433|gb|ABN45099.1| Modification methylase DpnIIB, putative [Streptococcus sanguinis
SK36]
Length = 267
Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats.
Identities = 103/246 (41%), Positives = 144/246 (58%), Gaps = 6/246 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ L ++ +S+D+IFADPPY L G ++V WDK S E
Sbjct: 25 LVHADTFDFLSQMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R +LKPNGT+W+ GS HNI+ +G L+ F ILN+I W+KSNP PN
Sbjct: 84 DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA K + +NYD +K N QM+ G + +
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258
Query: 263 KRIASV 268
+R+
Sbjct: 259 RRLEEE 264
>gi|325127469|gb|EGC50398.1| adenine-specific methyltransferase LlaDCHIB [Neisseria meningitidis
N1568]
Length = 266
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 143/243 (58%), Gaps = 11/243 (4%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IFADPPY L +G + +V +WDK
Sbjct: 28 LYNENSLNVMRKILEKYPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPP 146
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N R F ++ ET++WA + KA +TF+Y+ +KA + QM+ W P + +E+ K
Sbjct: 147 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQTDGKQMKCVWTFPPPNKAEKTFGK 205
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D+
Sbjct: 206 -----HPTQKPLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFF 260
Query: 259 DIA 261
++A
Sbjct: 261 ELA 263
>gi|327470495|gb|EGF15951.1| modification methylase BabI [Streptococcus sanguinis SK330]
Length = 265
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 103/247 (41%), Positives = 145/247 (58%), Gaps = 6/247 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ L ++ +S+D+IFADPPY L G ++V WDK S E
Sbjct: 25 LVHADTFDFLSQMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R +LKPNGT+W+ GS HNI+ +G L+ F ILN+I W+KSNP PN
Sbjct: 84 DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA K + +NYD +K N QM+ G + +
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258
Query: 263 KRIASVQ 269
+R+ +
Sbjct: 259 RRLEEER 265
>gi|218961616|ref|YP_001741391.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
acidaminovorans]
gi|167730273|emb|CAO81185.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
acidaminovorans]
Length = 263
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 98/253 (38%), Positives = 140/253 (55%), Gaps = 13/253 (5%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ GN + +L++L S+D+IFADPPY L +G + +V WD F
Sbjct: 16 LYWGNCMEILKELEPNSIDMIFADPPYFLS-DGTITCKSGKMVSVKKGDWDLLDEFNNKS 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F W+ CR++LKP+GT+W+ G+YH+I++ G LQ F I+NDI W K N PN
Sbjct: 75 EFHHKWISVCRQILKPSGTIWISGTYHSIYQCGYELQKQGFRIINDICWFKPNAAPNLTR 134
Query: 143 RRFQNAHETLIWASP-------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ F +HET++WA ++ + QMRS W IP E++
Sbjct: 135 KCFTASHETILWAIKDPLQKQKYHYELMKNTDWMGDIINKKGKQMRSVWCIPTTPAREKI 194
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
K HPTQKP ALL RI++SST GD++LDPF GSGT+G VAKK R++IGI++
Sbjct: 195 HGK-----HPTQKPIALLERIILSSTDEGDLVLDPFNGSGTTGVVAKKYHRNYIGIDINI 249
Query: 256 DYIDIATKRIASV 268
DY+ + +RI
Sbjct: 250 DYLKLTIERIKDT 262
>gi|324991367|gb|EGC23300.1| modification methylase BabI [Streptococcus sanguinis SK353]
gi|325687054|gb|EGD29077.1| modification methylase BabI [Streptococcus sanguinis SK72]
Length = 267
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 103/246 (41%), Positives = 144/246 (58%), Gaps = 6/246 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ L ++ +S+D+IFADPPY L G ++V WDK S E
Sbjct: 25 LVHADTFDFLSQMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R +LKPNGT+W+ GS HNI+ +G L+ F ILN+I W+KSNP PN
Sbjct: 84 DFNRRWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA K + +NYD +K N QM+ G + +
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258
Query: 263 KRIASV 268
+R+
Sbjct: 259 RRLEEE 264
>gi|332362311|gb|EGJ40111.1| modification methylase BabI [Streptococcus sanguinis SK1056]
Length = 265
Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 103/247 (41%), Positives = 145/247 (58%), Gaps = 6/247 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ L ++ +S+D+IFADPPY L G ++V WDK S E
Sbjct: 25 LVHADTFDFLSQMKPESMDMIFADPPYFLSNGG-FSNSGGNIVSVDKGDWDKVSGLEEKH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R +LKPNGT+W+ GS HNI+ +G L+ F ILN+I W+KSNP PN
Sbjct: 84 DFNRQWLRLVRPILKPNGTIWISGSLHNIYSVGMALEQEGFKILNNITWQKSNPAPNLSC 143
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++WA K + +NYD +K N QM+ G + +
Sbjct: 144 RYFTHSTETILWARKDDKKAKHYYNYDLMKDINGGKQMKDV-----WIGPLTKKAEKWAG 198
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKPE LL RI+++STK D ILDPF GSGT+G VAK+L R FIGI+ ++DY++IA
Sbjct: 199 KHPTQKPEYLLERIILASTKENDYILDPFVGSGTTGVVAKRLGRKFIGIDAEKDYLEIAK 258
Query: 263 KRIASVQ 269
+R+ +
Sbjct: 259 RRLEEER 265
>gi|166032271|ref|ZP_02235100.1| hypothetical protein DORFOR_01974 [Dorea formicigenerans ATCC
27755]
gi|166027994|gb|EDR46751.1| hypothetical protein DORFOR_01974 [Dorea formicigenerans ATCC
27755]
Length = 270
Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 102/258 (39%), Positives = 154/258 (59%), Gaps = 10/258 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----FSS 77
++I G+S +L K+ +SVD+IFADPPY L +G + +V SWDK +S
Sbjct: 19 QLIVGDSFKILTKMEPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTS 77
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E F R W+ C++VLKPNGT+W+ G+ HNI+ IG L+ F I+N+I W+K+NP
Sbjct: 78 VEEKHKFNRKWIKLCKKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA + K + F+Y +K N QM+ W + SE+
Sbjct: 138 PNLACRCFTHSTETILWAKKNDKKSRHFFDYQKMKEMNGGKQMKDVWTGALTKPSEKTEG 197
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K HPTQKP+ LL +I+++ST+ G +ILDPF GSGT+G A + R FIGI++ ++Y
Sbjct: 198 K-----HPTQKPKYLLEKIVLASTEEGQVILDPFCGSGTTGVEAVRFGRKFIGIDVSEEY 252
Query: 258 IDIATKRIASVQPLGNIE 275
++I+ +R+ V
Sbjct: 253 LEISKRRLEKVYGDAKEY 270
>gi|149917692|ref|ZP_01906188.1| DNA methylase N-4/N-6 [Plesiocystis pacifica SIR-1]
gi|149821474|gb|EDM80874.1| DNA methylase N-4/N-6 [Plesiocystis pacifica SIR-1]
Length = 348
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 101/244 (41%), Positives = 143/244 (58%), Gaps = 7/244 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I+G+S+ +LE+LP SVD+IFADPPY L G V WD +
Sbjct: 88 RLIQGDSLDILEQLPEGSVDVIFADPPYFLSNGGT-TCQGGKRVSVNKGKWDASLGAQDN 146
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
AF + WL AC+RVL NGT+WV G+ H IF +G +Q L F +LNDIVW K NP PN
Sbjct: 147 HAFNKRWLSACQRVLADNGTIWVSGTAHVIFSVGYAMQELGFKMLNDIVWEKPNPPPNLS 206
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ E ++WA+ + K+K Y ++Y +K N QM++ W SE+ K
Sbjct: 207 CRYFTHSTELVLWAAKTRKSKHY-YDYQEMKLRNGGKQMKNVWRFTAPGKSEKTHGK--- 262
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L++S P +LDPF GSGT+G A KL + G+E + +Y+ ++
Sbjct: 263 --HPTQKPLALLDRLLMASCHPDARVLDPFNGSGTTGVAAAKLGLQYTGLEREPEYLALS 320
Query: 262 TKRI 265
R+
Sbjct: 321 KARL 324
>gi|115375188|ref|ZP_01462455.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
gi|310823140|ref|YP_003955498.1| adenine-specific DNA methyltransferase [Stigmatella aurantiaca
DW4/3-1]
gi|115367839|gb|EAU66807.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
gi|309396212|gb|ADO73671.1| adenine-specific DNA methyltransferase [Stigmatella aurantiaca
DW4/3-1]
Length = 289
Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 102/263 (38%), Positives = 137/263 (52%), Gaps = 16/263 (6%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ +G+S+ +L + P + DL+FADPPY L G +WD E
Sbjct: 27 KLYQGDSVELLNQFPEQQFDLVFADPPYFLSNGG-FTCKSGKRASVAKGAWDVSRGVEED 85
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
FT WL AC+RVLKP GTLWV G+ H IF +G +Q L F +LN + W K N PN
Sbjct: 86 HRFTTEWLKACQRVLKPTGTLWVSGTQHVIFNVGFAMQKLGFKLLNTVTWYKPNASPNLS 145
Query: 142 GRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRSDWLIP------------- 187
R F ++ E LIWAS K +TFNY +K N QMR W +P
Sbjct: 146 CRYFTHSTELLIWASPKPAKTLQHTFNYARMKTENGGKQMRDVWNLPRTGEEELSADGAG 205
Query: 188 -ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ + R + HPTQKP ALL RI+ +ST +LDPF GSGT+G A KL R
Sbjct: 206 RMWTQIAPRREEKAFGSHPTQKPVALLERIIEASTPEDATVLDPFNGSGTTGVAALKLGR 265
Query: 247 SFIGIEMKQDYIDIATKRIASVQ 269
+ GI++ Y+ + KR+ +V+
Sbjct: 266 RYTGIDLDPTYLSLTKKRLDAVK 288
>gi|315639073|ref|ZP_07894241.1| modification methylase BabI [Campylobacter upsaliensis JV21]
gi|315480849|gb|EFU71485.1| modification methylase BabI [Campylobacter upsaliensis JV21]
Length = 221
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
A S K +TFNY +K N + Q +S W I IC G+ERL++K+G+K H TQKPEALL
Sbjct: 1 MAFWSIKNAKFTFNYKTMKFLNHNKQEKSIWNIGICIGNERLKDKNGKKAHSTQKPEALL 60
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
++++SSTK G ++LDPFFG+GT+GAVAK+L R FIGIE ++Y+ IA RI V + +
Sbjct: 61 EKVILSSTKNGALVLDPFFGTGTTGAVAKRLGRHFIGIEQDENYVKIAKARIEQVC-VED 119
Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHR 333
ELT + P+V+ L+ G ++ + + N + + + E+ SIH+
Sbjct: 120 NELTRNELEIKPPKVSLEKLLNAGFLKENERFYDKNQNFICYLVHNNKVSDNKEILSIHK 179
Query: 334 VGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
+ AK NGW+++Y K +L SI+ LR
Sbjct: 180 MAAKYLNKANHNGWSYFYILKDEKLISIDALRYAY 214
>gi|291523889|emb|CBK89476.1| DNA modification methylase [Eubacterium rectale DSM 17629]
Length = 270
Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats.
Identities = 101/258 (39%), Positives = 155/258 (60%), Gaps = 10/258 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----FSS 77
+++ G+S +L K+ +SVD+IFADPPY L +G + +V SWDK +S
Sbjct: 19 QLVLGDSFKILTKMKPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTS 77
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E F R W+ C++VLKPNGT+W+ G+ HNI+ IG L+ F I+N+I W+K+NP
Sbjct: 78 VEEKHKFNRKWIRLCKKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA + K + F+Y +K N QM+ W + SE+
Sbjct: 138 PNLACRCFTHSTETILWAKKNDKKSRHFFDYQKMKKMNGGKQMKDVWTGALTKPSEKTEG 197
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K HPTQKPE LL +I+++ST+ G +ILDPF GSGT+G A + R F+GI++ ++Y
Sbjct: 198 K-----HPTQKPEYLLEKIVLASTEKGQVILDPFCGSGTTGVEAVRFGRKFVGIDVSEEY 252
Query: 258 IDIATKRIASVQPLGNIE 275
++I+ +R+ V+
Sbjct: 253 LEISKRRLEKVKIDAKEH 270
>gi|57242503|ref|ZP_00370441.1| adenine specific DNA methyltransferase (HINFIM) [Campylobacter
upsaliensis RM3195]
gi|57016788|gb|EAL53571.1| adenine specific DNA methyltransferase (HINFIM) [Campylobacter
upsaliensis RM3195]
Length = 221
Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats.
Identities = 85/215 (39%), Positives = 127/215 (59%), Gaps = 1/215 (0%)
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
A S K +TFNY +K N + Q +S W I IC G+ERL++K+G+K H TQKPEALL
Sbjct: 1 MAFWSIKNTKFTFNYKTMKFLNHNKQEKSIWNIGICIGNERLKDKNGKKAHSTQKPEALL 60
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
++++SSTK ++LDPFFG+GT+GAVAK+L R FIGIE ++Y+ IA RI V + +
Sbjct: 61 EKVILSSTKKDALVLDPFFGTGTTGAVAKRLGRHFIGIEQDENYVKIAKARIKQVC-VED 119
Query: 274 IELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHR 333
ELT + P+V+ L+ G ++ + + N + + + E+ SIH+
Sbjct: 120 NELTRNELEIKPPKVSLEKLLNAGFLKENERFYDKNQNFICYLVHNNKVSDNKEILSIHK 179
Query: 334 VGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
+ AK NGW+++Y K +L SI+ LR
Sbjct: 180 MAAKYLNKANYNGWSYFYILKDEKLISIDALRYAY 214
>gi|189485748|ref|YP_001956689.1| DNA modification methylase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287707|dbj|BAG14228.1| DNA modification methylase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 310
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 102/255 (40%), Positives = 140/255 (54%), Gaps = 13/255 (5%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ I +L+ LP SV++IFADPPY L NG V WD E
Sbjct: 14 TLYNGDCIEILKLLPIDSVNMIFADPPYFLS-NGSFTCHAGKRVSVKKGDWDLGGGTEKN 72
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F AWL AC+RVLKPNGT+WV G+YH+I++ G L+ + LNDI+W K N PN
Sbjct: 73 LEFHIAWLKACKRVLKPNGTIWVSGTYHSIYQCGVALEINGYHFLNDIIWFKPNAAPNLS 132
Query: 142 GRRFQNAHETLIWASPSPKAKG-------YTFNYDALKAANEDVQMRSDWLIPICSGSER 194
R F +HET+IW+ K++ + + QMRS W I SE+
Sbjct: 133 CRFFTASHETIIWSKKEKKSRHIFNYDLMKKGQWKEDLLKKDGSQMRSVWSIGTPKPSEK 192
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ K HPTQKP LL RI+++ST+ GDIILDPF GS T+G A R FIGI+ +
Sbjct: 193 IFGK-----HPTQKPLDLLKRIVLASTEAGDIILDPFTGSSTTGIAAVTNGRMFIGIDKE 247
Query: 255 QDYIDIATKRIASVQ 269
+ Y++++ KR ++
Sbjct: 248 KRYLELSVKRFENLN 262
>gi|238917688|ref|YP_002931205.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
eligens ATCC 27750]
gi|238873048|gb|ACR72758.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
eligens ATCC 27750]
Length = 267
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 102/252 (40%), Positives = 153/252 (60%), Gaps = 10/252 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----FSS 77
+++ G+S +L K+ +SVD+IFADPPY L +G + +V SWDK +
Sbjct: 19 QLVLGDSFKILTKMKPESVDMIFADPPYFLSNDG-ITCQGGKMVSVNKGSWDKLSESGTG 77
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E F R W+ CR+VLKPNGT+W+ G+ HNI+ IG L+ F I+N+I W+K+NP
Sbjct: 78 VEEKHKFNRKWIKLCRKVLKPNGTIWISGTLHNIYSIGMALEQEGFKIINNITWQKTNPP 137
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET++WA + K + F+Y +K N QM+ W + SE+
Sbjct: 138 PNLACRCFTHSTETILWAQKNDKKSRHFFDYQKMKEMNGGKQMKDVWTGALTKPSEKTEG 197
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K HPTQKPE LL +I+++ST+ G +ILDPF GSGT+G A + R FIGI++ ++Y
Sbjct: 198 K-----HPTQKPEYLLEKIVLASTEEGQVILDPFCGSGTTGVEAVRFGRKFIGIDVSEEY 252
Query: 258 IDIATKRIASVQ 269
++I+ +R+ V
Sbjct: 253 LEISKRRLEKVA 264
>gi|254492921|ref|ZP_05106092.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae 1291]
gi|268598172|ref|ZP_06132339.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae MS11]
gi|268600516|ref|ZP_06134683.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae PID18]
gi|268602749|ref|ZP_06136916.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae PID1]
gi|268681298|ref|ZP_06148160.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae PID332]
gi|291044684|ref|ZP_06570393.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae DGI2]
gi|226511961|gb|EEH61306.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae 1291]
gi|268582303|gb|EEZ46979.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae MS11]
gi|268584647|gb|EEZ49323.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae PID18]
gi|268586880|gb|EEZ51556.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae PID1]
gi|268621582|gb|EEZ53982.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae PID332]
gi|291011578|gb|EFE03574.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae DGI2]
Length = 252
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 97/241 (40%), Positives = 143/241 (59%), Gaps = 11/241 (4%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IFADPPY L +G + +V +WDK
Sbjct: 19 LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 77
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 78 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 137
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N R F ++ ET++WA + KA +TF+Y+ +KA N QM+ W P + +E+ K
Sbjct: 138 NLSCRFFTHSTETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK 196
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP +LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D++
Sbjct: 197 -----HPTQKPLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFL 251
Query: 259 D 259
+
Sbjct: 252 N 252
>gi|296126987|ref|YP_003634239.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
12563]
gi|296018803|gb|ADG72040.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
12563]
Length = 259
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 109/254 (42%), Positives = 156/254 (61%), Gaps = 14/254 (5%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
IIKG+ + VL+ + S+D+IFADPPYNL NG + +V WD+ FE
Sbjct: 5 IIKGDCLEVLDTIEENSIDMIFADPPYNLSNNG-ITCHAGKMVSVNKGEWDRSLGFEEDT 63
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
AF AW+ CRRVLK GT+W+ G+ H+I++ G +L+ L F+ILNDIVW K N PN
Sbjct: 64 AFHEAWISKCRRVLKDEGTIWISGTNHSIYKCGYILEKLGFYILNDIVWYKPNAAPNLSC 123
Query: 143 RRFQNAHETLIWASPSPKAKGYT-------FNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ F ++HET++WA + AK Y +++ K ++ QMRS W I S SE++
Sbjct: 124 KVFTHSHETILWAKKNKNAKHYYNYDLMKNMDFEDDKLKSKGKQMRSVWSISAPSKSEKI 183
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMK 254
K HPTQKP LL+RI+++STK D ILDPF GSGT+ A K + R++IGIE+
Sbjct: 184 HGK-----HPTQKPLKLLTRIILASTKENDTILDPFNGSGTTAAACKIIGNRNYIGIEID 238
Query: 255 QDYIDIATKRIASV 268
++YI++ KR+ +
Sbjct: 239 ENYIELTNKRLNDI 252
>gi|306818165|ref|ZP_07451896.1| modification methylase BabI [Mobiluncus mulieris ATCC 35239]
gi|304649129|gb|EFM46423.1| modification methylase BabI [Mobiluncus mulieris ATCC 35239]
Length = 323
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 96/235 (40%), Positives = 138/235 (58%), Gaps = 6/235 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I G++ +L ++ SVD+IFADPPY L G + V +WD+ E
Sbjct: 23 RIFLGDAFEILARIAQSSVDMIFADPPYFLSNGG-ISCSGGRQVSVNKGAWDRGMGTEEK 81
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F R W+ C+RVLK +G++WV G++HNI+ +G L+ F ILN+I W+K NP PN
Sbjct: 82 HGFNRRWVRQCKRVLKRDGSIWVSGTFHNIYSLGFALEQEGFKILNNITWQKLNPPPNLA 141
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ ET+IWA + + + F+Y +K N QM+ W + SE++ K
Sbjct: 142 CRCFTHSTETVIWARKNERKARHFFDYPLMKTLNGGKQMKDVWAGTLTPKSEKICGK--- 198
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPTQKPE LL RI+++ST+ GD++LDPF GSGT+ VAK+L R IGIE
Sbjct: 199 --HPTQKPEYLLERIILASTREGDLVLDPFVGSGTTAVVAKRLGRYSIGIETNFY 251
>gi|257456835|ref|ZP_05622019.1| DNA methylase [Treponema vincentii ATCC 35580]
gi|257445841|gb|EEV20900.1| DNA methylase [Treponema vincentii ATCC 35580]
Length = 304
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 100/262 (38%), Positives = 146/262 (55%), Gaps = 6/262 (2%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + I + + VLE+LP +S+D+IFADPPY L +G + +V WDK
Sbjct: 39 EDSVNTIFNIDCLEVLERLPDESIDMIFADPPYMLSNDG-FTCQNGRMVSVNKGKWDKSC 97
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E F AW+ ACRRVLKP GT+W+ G+YH+I++ G +LQ NF ILNDI W K N
Sbjct: 98 GLETDMQFHNAWIAACRRVLKPEGTIWISGTYHSIYQCGYLLQKNNFHILNDIAWFKPNA 157
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL---KAANEDVQMRSDWLIPICSGSE 193
PN R F +HETLIWA K+ +TFNYDA+ + ++ + + S
Sbjct: 158 APNLSCRFFTASHETLIWARKDKKS-KHTFNYDAMKNGFFPEDKLKKAHSQMRSVWSIPT 216
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIE 252
+ HPTQKP +LL RI+++ST IILDPF G GT+G + + R +IGIE
Sbjct: 217 PPAGEKELGKHPTQKPLSLLKRIILASTNDNAIILDPFNGGGTTGIASTIIGKRYYIGIE 276
Query: 253 MKQDYIDIATKRIASVQPLGNI 274
+ ++Y ++ +++ +
Sbjct: 277 IDKEYCELTKRKLMQISDDEEE 298
>gi|210620631|ref|ZP_03292155.1| hypothetical protein CLOHIR_00098 [Clostridium hiranonis DSM 13275]
gi|210155240|gb|EEA86246.1| hypothetical protein CLOHIR_00098 [Clostridium hiranonis DSM 13275]
Length = 267
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 107/255 (41%), Positives = 155/255 (60%), Gaps = 9/255 (3%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-- 74
+ K K+I G++ S+L K+ +S+D+IFADPPY L NG + +V SWD
Sbjct: 15 EDEKSKLILGDTFSILSKIKKESIDMIFADPPYFLSNNG-ITCSGGKMVSVNKGSWDTLN 73
Query: 75 -FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+S F R W+ C+RVLKPNGT+W+ G+ HNI+ IG L+ F I+N+I W+K
Sbjct: 74 LGNSVSEKHKFNRKWIKMCKRVLKPNGTIWISGTMHNIYSIGMALEQEGFKIINNITWQK 133
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+NP PN R F ++ ET++WA + K + FNY+ +K N QM+ +GS
Sbjct: 134 TNPPPNLACRCFTHSTETVLWAKKNDKKSKHLFNYNDMKEMNGGKQMKDV-----WTGSL 188
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+++ E HPTQKPE LL RI++SST+ IILDPF GSGT+G +AK+ R FIGI+
Sbjct: 189 TKKSEKSEGKHPTQKPEYLLERIVISSTEENQIILDPFCGSGTTGVIAKRYGRKFIGIDN 248
Query: 254 KQDYIDIATKRIASV 268
+ +Y++I KR+
Sbjct: 249 EIEYLNITKKRLEKE 263
>gi|296274511|ref|YP_003657142.1| DNA methylase N-4/N-6 domain-containing protein [Arcobacter
nitrofigilis DSM 7299]
gi|296098685|gb|ADG94635.1| DNA methylase N-4/N-6 domain protein [Arcobacter nitrofigilis DSM
7299]
Length = 263
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 108/254 (42%), Positives = 147/254 (57%), Gaps = 14/254 (5%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ GN I +L+K+ S+D+IFADPPY L NG + + +V WDK E
Sbjct: 16 LYYGNCIEILKKIKKDSIDMIFADPPYGLSNNG-ITCKNGKMVSVNKGEWDKSKGIEEDF 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F W+ AC+RVLKPNGT+W+ G+YH+I+ G LQ F +LN+I W K N PN
Sbjct: 75 KFHNQWIKACQRVLKPNGTIWISGTYHSIYACGYALQKNKFKVLNEISWFKPNAAPNLSC 134
Query: 143 RRFQNAHETLIWASP--------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ F +HET+IWA + K + + NED QMRS W I S E+
Sbjct: 135 KYFTASHETIIWAIKESTQKHTYNYKTMKHGDWHKKDIIKNEDKQMRSVWSIATPSKKEK 194
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
L K HPTQKP LL RI++SST DIILDPF GS T+G VA + R FIGI+M+
Sbjct: 195 LFGK-----HPTQKPIKLLERIILSSTNENDIILDPFTGSSTTGVVALQNNRQFIGIDME 249
Query: 255 QDYIDIATKRIASV 268
++Y++++ KRI ++
Sbjct: 250 KEYLNLSIKRIHNI 263
>gi|146297739|ref|YP_001181510.1| DNA methylase N-4/N-6 domain-containing protein
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145411315|gb|ABP68319.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 270
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 91/262 (34%), Positives = 151/262 (57%), Gaps = 17/262 (6%)
Query: 21 DKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSL--VDAVTDSWDKFSS 77
+ I+ G+ +++++ +P++S+DLI+ADPPYNL + + + + + + WD +
Sbjct: 4 NTILHGDCVTIMKEHIPSESIDLIYADPPYNLSGRDLILKNNKTGGPFYKMNEEWDSW-D 62
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ Y FT WLLA VLK NG+L++ +YHNI + + + + F + N + W K+N M
Sbjct: 63 YDKYCEFTYNWLLASYSVLKSNGSLYISCTYHNIGEVIFLAKKIGFKLNNILTWVKTNAM 122
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV----------QMRSDWLIP 187
PN R F++ E + W G+ F+Y+ +K N + +P
Sbjct: 123 PNITKRTFKHTTEFVCWFVK---GPGWKFHYNEIKMLNPRKTKDGSIKQMDDFFDFFEMP 179
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ G ER+++ +G HP QKPE LL I+ +S+ GDI+LDPFFG+GT+G VA+++ R
Sbjct: 180 LVQGKERIKSDNGRAAHPNQKPEKLLEIIITASSDEGDIVLDPFFGTGTTGVVAERMNRK 239
Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
+IGIE+ + YI IA KRI +
Sbjct: 240 WIGIEINETYIKIAKKRIEEER 261
>gi|254457477|ref|ZP_05070905.1| DNA methylase [Campylobacterales bacterium GD 1]
gi|207086269|gb|EDZ63553.1| DNA methylase [Campylobacterales bacterium GD 1]
Length = 258
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 108/262 (41%), Positives = 150/262 (57%), Gaps = 21/262 (8%)
Query: 20 KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA----VTDSW 72
D++ + I L +K+ +SV LIFADPPYNL G + S V + W
Sbjct: 3 LDQVYNADCIKTLNDTKKIAKESVQLIFADPPYNLS--GNALKSTGSKTGGDFTMVNEDW 60
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
DK + + FT W+ +C+ +LKPNG++++ SYHN+ L+ F I N I W
Sbjct: 61 DKMEE-QEFITFTNEWVKSCKDILKPNGSIFIACSYHNMGESIMSLKLNGFDIKNIITWN 119
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------DVQMRSDWL 185
KSN MPN R + E +IWA KG+ FNYD LK N D QMR W
Sbjct: 120 KSNAMPNLTRRVLTHTTEFVIWAVK---GKGWIFNYDILKELNPEKRQDGTDKQMRDIWT 176
Query: 186 IPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+P+C G ERLR+ DG+K LHPTQKPE LL RI++ + GD++LDPF GSGT+ +AKK
Sbjct: 177 LPLCQGKERLRDADGKKALHPTQKPEELLKRIILGFSNEGDLVLDPFGGSGTTPFIAKKY 236
Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
+R++I IE ++ Y D +R++
Sbjct: 237 KRNYIAIEREKKYADAIRQRVS 258
>gi|225163822|ref|ZP_03726119.1| Site-specific DNA-methyltransferase (adenine-specific) [Opitutaceae
bacterium TAV2]
gi|224801580|gb|EEG19879.1| Site-specific DNA-methyltransferase (adenine-specific) [Opitutaceae
bacterium TAV2]
Length = 641
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 86/410 (20%), Positives = 155/410 (37%), Gaps = 68/410 (16%)
Query: 6 SLAINENQNS-IFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP- 60
+L + E ++S + ++++++I G++ VL L VDLI+ DPP+++ + + P
Sbjct: 62 ALDLFEKKSSRLDDFRNRLIWGDNKLVLASLLAEFKGKVDLIYIDPPFDVGADFTMSLPV 121
Query: 61 ---------DHSLVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ S ++A D W K + +Y L + +L G+++V +
Sbjct: 122 GDGKETLEKEQSTIEAVAYRDMWGKGTD--SYLHMMYERLSLMKELLSERGSIYVHCDHR 179
Query: 110 NIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-------- 159
+ ++ + N ++W N +F + H+ L + + +
Sbjct: 180 VDSLVRRVMDEIFSPERFRNQMIWWYRNSGMKAASDKFHHKHDVLYFYAKNSVFTFNGYR 239
Query: 160 ---------KAKGYTFNYDALKAA----NEDV---QMRSDWLIPICSGSERLRNKDGEKL 203
K + Y F+ K E D L L+ D
Sbjct: 240 EPLKDGDSGKRRAYKFDSKLKKPLPVYDKEGKPVYYQVGDILAGSVWDVPILQGGDENIG 299
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+PTQKPEALL RI+ +S+ GD++ D F GSGT+GAVA++L R +I ++ + I K
Sbjct: 300 YPTQKPEALLERIIKASSNEGDLVADFFCGSGTTGAVAERLGRRWILADLGRFAIHTTRK 359
Query: 264 RIASVQPLGNIELTVLTGK----------------------RTEPRVAFNLLVERGLIQ- 300
R+ +Q + RV L Q
Sbjct: 360 RLIQLQSELHSGEKPYRAFDVYNLGRYERQWWQKKQLLGADEEHRRVVLQFHGASALEQP 419
Query: 301 PGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSE-TCNGWNF 349
P +L ++G V ++ + EL + + E C W F
Sbjct: 420 PSPLLHGSKGGAVCHVDGIDSIFTRDELREVAKATVGTGAKELHCLAWEF 469
>gi|291460930|ref|ZP_06025961.2| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
ATCC 33693]
gi|291379913|gb|EFE87431.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
ATCC 33693]
Length = 302
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 90/263 (34%), Positives = 144/263 (54%), Gaps = 10/263 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS---- 76
+ II G IS ++KLP +DLI ADPPYNL + + + + + +W+K
Sbjct: 19 NTIINGECISEMKKLPDSCIDLIIADPPYNLSKGNKWKWDNSTKLKGMGGNWNKVIQEWD 78
Query: 77 --SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ ++Y FT+ WL +R+LKP G++W+ G+YHNI I + Q L I+N+++W K
Sbjct: 79 NFTLQSYILFTKEWLSESKRILKPTGSIWIFGTYHNIGIINVVCQLLEIEIINEVIWYKR 138
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD----ALKAANEDVQMRSDWLIPICS 190
N PN GRR +HET++W + + K + Y FNY+ A + + +
Sbjct: 139 NAFPNLSGRRLTASHETILWCNKNGKKREYFFNYEFSKNADFSYDSLKSIGKQMRTVWDI 198
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+ + +++ HPTQKP +L RI+ ++K DIIL PF G+G+ AK R +IG
Sbjct: 199 SNNKEKSELLYGKHPTQKPIRILKRIIELTSKENDIILAPFSGAGSECVAAKITGRKYIG 258
Query: 251 IEMKQDYIDIATKRIASVQPLGN 273
IE+ Y DIA R+A+++ +
Sbjct: 259 IEINDFYCDIANNRLANIKKNNS 281
>gi|218960496|ref|YP_001740271.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
acidaminovorans]
gi|167729153|emb|CAO80064.1| Modification methylase DpnIIB (Adenine-specific methyltransferase
DpnIIB) (M.DpnIIB) (M.DpnII 2) [Candidatus Cloacamonas
acidaminovorans]
Length = 269
Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 103/248 (41%), Positives = 144/248 (58%), Gaps = 15/248 (6%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ G+++ ++++L +KS+DLIFADPPYNL L + SWD
Sbjct: 5 KLFNGDALEIIKQLQSKSIDLIFADPPYNLSGENHLTCKSGKIAKCDKGSWDHIDDI--- 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F + W+ C RVLK NGT+W+ G+ HN IG +L+ LN WI+NDI+W K N P +
Sbjct: 62 DEFNKKWIEECIRVLKDNGTIWISGTLHNHPSIGVILKQLNLWIINDIIWFKPNAAPLIQ 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
RF + E + A+ +K Y FNY+ QMR+ W L + +
Sbjct: 122 KNRFVPSTELIWLAAK---SKQYYFNYEMAVRLANGKQMRNLW---------ELSAEKHK 169
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+HPT+KPE LL RI++ +K DIILDPF GSGT+GAVAK+L R+F+GIE+ Q Y +IA
Sbjct: 170 TMHPTEKPEKLLERIVLIGSKQEDIILDPFMGSGTTGAVAKRLNRNFVGIEIDQTYYNIA 229
Query: 262 TKRIASVQ 269
KRI +
Sbjct: 230 QKRIENTN 237
>gi|68480349|gb|AAY97905.1| Mva1269I methyltransferase [Kocuria varians]
Length = 626
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 11/257 (4%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK----- 74
K++I + I ++ L S+D+I ADPPYNL G + + WDK
Sbjct: 4 KNEIYNMDCIEGMKLLKENSIDIIIADPPYNLSKGGNWSWKNEDNLKGFGGKWDKVMQNW 63
Query: 75 -FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
Y FT WL +R+LKP G+LWV G+YHNI I +Q L ++N+++W K
Sbjct: 64 DNMPISDYFTFTLKWLSEAKRILKPTGSLWVFGTYHNIGIINFAMQILEIEMINEVIWFK 123
Query: 134 SNPMPNFRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALKAANED----VQMRSDWLIPI 188
N PN GRR +HET+IWA S + K + Y FNY+ K + D Q
Sbjct: 124 RNSFPNLSGRRLTASHETIIWAHSGTAKDREYFFNYEMSKNHDYDSDLIKQPLKQMRTVW 183
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ + + + HPTQK E ++ R++ S K GD++L PF G+GT VAKKL +
Sbjct: 184 DIPNNKKKEELLYGKHPTQKVEKVIDRMIRISAKEGDLLLSPFCGAGTECVVAKKLGLDY 243
Query: 249 IGIEMKQDYIDIATKRI 265
I E++++Y++++ R+
Sbjct: 244 IAFELEEEYVNLSKTRL 260
>gi|300870838|ref|YP_003785709.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
pilosicoli 95/1000]
gi|300688537|gb|ADK31208.1| DNA methylase N-4/N-6 domain protein [Brachyspira pilosicoli
95/1000]
Length = 260
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 101/260 (38%), Positives = 145/260 (55%), Gaps = 4/260 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D +I GN + +L+ L S+D+IFADPPYNL NG V WD F+
Sbjct: 1 MDTLINGNCLEILDTLEENSIDMIFADPPYNLSNNGT-TCHSGKRVSVNKGEWDISLGFD 59
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AF W+ CRRVLK NGT+W+ G+ H+I++ G +L+ L F+ILNDI W K N PN
Sbjct: 60 QDVAFHETWISKCRRVLKDNGTIWISGTNHSIYKCGFILEKLGFYILNDIAWYKPNAAPN 119
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDWLIPICSGSERLRN 197
F ++HETLIWA + KAK + L + ++ + + + S S +N
Sbjct: 120 LSCNVFAHSHETLIWAKKNKKAKHFYNYDLMKNLDFEKDKLKSKGKQMRSVWSISTPAKN 179
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV-AKKLRRSFIGIEMKQD 256
+ HPTQKP LL RI+++STK D ILDPF GSGT+ A R++IGI++ +
Sbjct: 180 EKIYGKHPTQKPIDLLIRIILASTKDNDTILDPFNGSGTTAVACAMIGNRNYIGIDIDNN 239
Query: 257 YIDIATKRIASVQPLGNIEL 276
YI++ KRI ++ ++
Sbjct: 240 YIELTKKRIKDIENNIFEDI 259
>gi|326560996|gb|EGE11361.1| DNA methylase N-4/N-6 domain protein [Moraxella catarrhalis 7169]
Length = 273
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 102/257 (39%), Positives = 148/257 (57%), Gaps = 7/257 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I +GN I ++ + S+D+IFADPPY L +G L + + WD + +
Sbjct: 16 IYQGNCIDIMSHFQSNSIDMIFADPPYFLSNDG-LTFKNGIIQSVNKGEWDTNDNENSIY 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F+ W+ +R+LK NGT+W+ G++HNIF +G +L+ NF ILN I W K NP PNF
Sbjct: 75 NFSHEWIAQSKRLLKDNGTIWISGTHHNIFTVGQLLKENNFKILNIITWEKPNPPPNFSC 134
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F + E +IWA K Y F+YD +K N D Q + W +P E+ + K
Sbjct: 135 RYFTYSSEWIIWARKHSKIPHY-FDYDLMKKLNGDKQAKDVWRLPAVGSWEKTQGK---- 189
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP LLSRI++SST+ GD+ILDPF GSGT+G A L R FIGI+ + ++++++
Sbjct: 190 -HPTQKPLGLLSRIILSSTQKGDLILDPFSGSGTTGIAATILGRQFIGIDKELEFLELSK 248
Query: 263 KRIASVQPLGNIELTVL 279
+R ++ P E
Sbjct: 249 RRYQAITPKSKYEFKQK 265
>gi|257455789|ref|ZP_05621015.1| DNA methylase [Enhydrobacter aerosaccus SK60]
gi|257446803|gb|EEV21820.1| DNA methylase [Enhydrobacter aerosaccus SK60]
Length = 269
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 101/253 (39%), Positives = 149/253 (58%), Gaps = 9/253 (3%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
Q+ + ++ +++G+ + +L + KS+++IFADPPY L +G L + + W
Sbjct: 5 QSELQDF--TLLQGDCLHILPTIDDKSINMIFADPPYFLSNDG-LTVKNGMVQSVNKGEW 61
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
DKFS FT WL +R+L NGT+W+ G++HNIF +G +L LNF ILN I W
Sbjct: 62 DKFSDDNEVYIFTYDWLSQAKRMLADNGTIWMSGTHHNIFTLGRVLSQLNFKILNMITWE 121
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K NP PNF R F + E +IWA +PK Y F+Y+ +K+ N D QM+ W +P S
Sbjct: 122 KPNPPPNFSCRYFTYSTEWIIWARKNPKIPHY-FDYELMKSLNGDKQMKDVWRLPAVSSW 180
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
E+ K HPTQKP LLSRI+++STK D++LDPF GS T+G A R FIG++
Sbjct: 181 EKQFGK-----HPTQKPLGLLSRIVLASTKANDLVLDPFTGSSTTGIAANLFGRKFIGVD 235
Query: 253 MKQDYIDIATKRI 265
+++ ++ R
Sbjct: 236 QDSNFLTLSKNRY 248
>gi|294673721|ref|YP_003574337.1| DNA (cytosine-5-)-methyltransferase [Prevotella ruminicola 23]
gi|294472635|gb|ADE82024.1| DNA (cytosine-5-)-methyltransferase [Prevotella ruminicola 23]
Length = 414
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++G+ +SVL D+IFADPPY L G + + +V +WDK S E
Sbjct: 16 TLVEGDCVSVLNAF-DFKFDMIFADPPYFLSNGG-ISVSNGKVVCVDKGAWDKAPSSEYI 73
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F WL AC+ LK NGT+W+ G++HNIF + L L F ILN + W K++P N
Sbjct: 74 DEFNHKWLSACKDKLKDNGTIWISGTHHNIFSVAEQLSELGFKILNVVTWNKTDPPDNVS 133
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F+++ E +IWA S KA+ + +NY+ ++ N+ QM W +P S E+ K
Sbjct: 134 HRVFKHSAEYIIWAKKSKKAQ-HRYNYELMRQLNDGKQMTDVWRMPAVSKWEKSCGK--- 189
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP +LL+RI+++STK GD +LDPF GSGT+G A L R ++GI++++ ++++A
Sbjct: 190 --HPTQKPLSLLARIIMASTKEGDWVLDPFNGSGTTGVAASLLGRKYLGIDIEKSFLELA 247
Query: 262 TKR 264
KR
Sbjct: 248 AKR 250
>gi|239998143|ref|ZP_04718067.1| putative modification methylase [Neisseria gonorrhoeae 35/02]
gi|240015769|ref|ZP_04722309.1| putative modification methylase [Neisseria gonorrhoeae FA6140]
gi|240079906|ref|ZP_04724449.1| putative modification methylase [Neisseria gonorrhoeae FA19]
gi|240112113|ref|ZP_04726603.1| putative modification methylase [Neisseria gonorrhoeae MS11]
gi|240114859|ref|ZP_04728921.1| putative modification methylase [Neisseria gonorrhoeae PID18]
gi|240117062|ref|ZP_04731124.1| putative modification methylase [Neisseria gonorrhoeae PID1]
gi|240122700|ref|ZP_04735656.1| putative modification methylase [Neisseria gonorrhoeae PID332]
gi|260441326|ref|ZP_05795142.1| putative modification methylase [Neisseria gonorrhoeae DGI2]
gi|268593992|ref|ZP_06128159.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268596046|ref|ZP_06130213.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268547381|gb|EEZ42799.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268549834|gb|EEZ44853.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|317165585|gb|ADV09126.1| putative modification methylase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 225
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 96/231 (41%), Positives = 138/231 (59%), Gaps = 7/231 (3%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+LEK P D+IFADPPY L +G + +V +WDK A F W
Sbjct: 2 RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
L C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN R F ++
Sbjct: 61 LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
ET++WA + KA +TF+Y+ +KA N QM+ W P + +E+ K HPTQK
Sbjct: 121 TETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQK 174
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
P +LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D+++
Sbjct: 175 PLSLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225
>gi|293397789|ref|ZP_06641995.1| DNA methylase [Neisseria gonorrhoeae F62]
gi|291611735|gb|EFF40804.1| DNA methylase [Neisseria gonorrhoeae F62]
Length = 225
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 96/231 (41%), Positives = 137/231 (59%), Gaps = 7/231 (3%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+LEK P D+IFADPPY L +G + +V +WDK A F W
Sbjct: 2 RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
L C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN R F ++
Sbjct: 61 LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
ET++WA + KA +TF+Y+ +KA N QM+ W P + +E+ K HPTQK
Sbjct: 121 TETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFPPPNKTEKTFGK-----HPTQK 174
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
P LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D+++
Sbjct: 175 PLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225
>gi|59800480|ref|YP_207192.1| putative modification methylase [Neisseria gonorrhoeae FA 1090]
gi|59717375|gb|AAW88780.1| putative modification methylase [Neisseria gonorrhoeae FA 1090]
Length = 225
Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats.
Identities = 95/231 (41%), Positives = 136/231 (58%), Gaps = 7/231 (3%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+LEK P D+IFADPPY L +G + +V +WDK A F W
Sbjct: 2 RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
L C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN R F ++
Sbjct: 61 LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
ET++WA + KA +TF+Y+ +KA N QM+ W + +E+ K HPTQK
Sbjct: 121 TETILWAKKNKKA-KHTFHYEMMKAQNNGKQMKCVWTFAPPNKTEKTFGK-----HPTQK 174
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
P LL R ++S++ GD+I DPF GSGT+G A K R F G E+++D+++
Sbjct: 175 PLPLLERCILSASNIGDLIFDPFMGSGTTGVAALKHGRRFCGCELEEDFLN 225
>gi|323140475|ref|ZP_08075403.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
12067]
gi|322415043|gb|EFY05834.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
12067]
Length = 269
Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats.
Identities = 106/252 (42%), Positives = 148/252 (58%), Gaps = 10/252 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ G++ +L+KL +SVD+IFADPPY L NG R +V +WD E
Sbjct: 19 QLLLGDTFELLQKLRPESVDVIFADPPYFLSNNGITCRS-GKMVSVNKAAWDMVDDKEHM 77
Query: 82 D----AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F R W+ C++VLKPNGT+W+ G++HNIF IG L+ F I+N+I W+K+NP
Sbjct: 78 LANKHQFNRRWINLCKKVLKPNGTIWISGTFHNIFSIGMALEEEGFRIINNITWQKTNPP 137
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F ++ ET+IWA K Y FNY +K N QM+ W + SE+
Sbjct: 138 PNLACRCFTHSTETIIWACKDDKKAKYFFNYALMKEINGGKQMKDVWTGSLTKPSEKKFG 197
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K HPTQKPE LL RIL +ST+ G I+LDPF GSGT+G A + +FIGI+ ++Y
Sbjct: 198 K-----HPTQKPEYLLERILRASTQAGYIVLDPFCGSGTTGVEALRNGCNFIGIDNVEEY 252
Query: 258 IDIATKRIASVQ 269
+ + KR+ Q
Sbjct: 253 LKLTQKRLDKEQ 264
>gi|462633|sp|P34721|MT1B_MORBO RecName: Full=Modification methylase MboIB; Short=M.MboIB; AltName:
Full=Adenine-specific methyltransferase MboIB; AltName:
Full=M.MboI C
gi|303630|dbj|BAA03073.1| MboI methyltransferase C [Moraxella bovis]
Length = 273
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 103/260 (39%), Positives = 146/260 (56%), Gaps = 7/260 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I +GN I + S+D+IFADPPY L +G L + + WDK + +
Sbjct: 16 IYQGNCIDFMSHFQDNSIDMIFADPPYFLSNDG-LTFKNSIIQSVNKGEWDKNDNEASIY 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F W+ R++LK NGT+W+ G++HNIF +G +L+ NF ILN I W K NP PNF
Sbjct: 75 NFNHEWIAQARQLLKDNGTIWISGTHHNIFTVGQVLKENNFKILNIITWEKPNPPPNFSC 134
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F + E +IWA K Y FNYD +K N D Q + W +P E+ + K
Sbjct: 135 RYFTYSSEWIIWARKHSKIPHY-FNYDLMKKLNGDKQQKDIWRLPAVGSWEKTQGK---- 189
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP LLSRI++SST+ D+ILDPF GSGT+G L R++IGIE + ++++++
Sbjct: 190 -HPTQKPLGLLSRIILSSTQKDDLILDPFSGSGTTGIAGVLLDRNYIGIEQELEFLELSK 248
Query: 263 KRIASVQPLGNIELTVLTGK 282
+R + P+ E K
Sbjct: 249 RRYHEITPVLKNEFKQKIRK 268
>gi|108763695|ref|YP_633292.1| putative adenine-specific DNA methyltransferase [Myxococcus xanthus
DK 1622]
gi|108467575|gb|ABF92760.1| putative adenine-specific DNA methyltransferase [Myxococcus xanthus
DK 1622]
Length = 294
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 101/261 (38%), Positives = 137/261 (52%), Gaps = 17/261 (6%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+S+ ++ + ++ D+IFADPPY L G + V WD E
Sbjct: 30 TLLHGDSLELMSQFEPQTFDMIFADPPYFLSNGGTTCKG-GKRVSVAKGGWDVSRGVEED 88
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
FT WL AC+R+LKP GTLWV G+ H IF G +Q L + +LN + W K N PN
Sbjct: 89 HKFTTEWLAACQRLLKPTGTLWVSGTQHVIFNAGFAMQKLGYKLLNTVTWFKPNASPNLA 148
Query: 142 GRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE------- 193
R F ++ E LIWAS S +TFNY +KA N QMR W +P +E
Sbjct: 149 CRYFTHSTELLIWASPKSGGKLQHTFNYARMKAENGGKQMRDAWALPPSGDAELTADGEG 208
Query: 194 --------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
R + HPTQKP ALL RIL +S P ++LDPF GSGTSG A KL
Sbjct: 209 RMWTLTVPRGGEEKAFGSHPTQKPVALLERILEASCPPDALVLDPFNGSGTSGVAALKLG 268
Query: 246 RSFIGIEMKQDYIDIATKRIA 266
++GI+M + Y+ ++ KR+
Sbjct: 269 HRYVGIDMDEKYLALSEKRLN 289
>gi|330995399|ref|ZP_08319309.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
11841]
gi|329575894|gb|EGG57418.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
11841]
Length = 289
Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 94/240 (39%), Positives = 126/240 (52%), Gaps = 8/240 (3%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
G+ +L+ D+IFADPPY L G + +V WDK S E AF
Sbjct: 17 HGDCFKLLKDF-DFKFDMIFADPPYFLSNGG-ISLQRGKVVCVDKGDWDKGKSQEDMLAF 74
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
WL CR LK NGT+W+ G+YHNIF + L L + ILN + W+K+NP N R
Sbjct: 75 NMEWLRLCRDKLKDNGTIWISGTYHNIFSVANCLTELGYKILNVVTWQKTNPPANISCRF 134
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
F + E +IWA K + FNYD +K N+ QM W +P E+ K H
Sbjct: 135 FTYSTEFVIWARKMQK-IPHKFNYDLMKELNDGKQMTDVWRMPAIGRWEKTCGK-----H 188
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PTQKP LL R++++ST GD ILDPF GS T+G A R F G+E ++D+ ++ R
Sbjct: 189 PTQKPLRLLVRMILASTNQGDWILDPFSGSSTTGIAANLCGRRFAGLEQEEDFCKLSKAR 248
>gi|108805939|ref|YP_645876.1| DNA methylase N-4/N-6 [Rubrobacter xylanophilus DSM 9941]
gi|108767182|gb|ABG06064.1| DNA methylase N-4/N-6 [Rubrobacter xylanophilus DSM 9941]
Length = 266
Score = 179 bits (453), Expect = 9e-43, Method: Composition-based stats.
Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 9/244 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + ++ +P VD IFADPPY L + L WD+
Sbjct: 16 VYLADCVELMRLMPPGGVDAIFADPPYRLSGG-GVTVRGGRLAPVDKGEWDRPLGHRGNH 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F WL RRVL+P G++WV G++H IF +G LQ+L F ++N +VW K +P PN
Sbjct: 75 EFNLRWLREARRVLRPGGSIWVSGTHHIIFSLGFALQSLGFRLINSVVWEKPDPPPNALR 134
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
F +AHETLIWAS +G+TFN+D L + Q+ S W +P +ERL
Sbjct: 135 TAFTHAHETLIWASK---GRGHTFNHDLLNGPDPTSQLSSVWRMPPPPSAERLHGY---- 187
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP L+ R L++ST+ G+++ DPF GSGT+ AK+L R F+G E++++Y ++A
Sbjct: 188 -HPTQKPLRLVRRALLASTREGELVFDPFTGSGTTAVAAKELGRFFVGAELEREYAELAG 246
Query: 263 KRIA 266
+RI
Sbjct: 247 RRIR 250
>gi|86159277|ref|YP_466062.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775788|gb|ABC82625.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
Length = 285
Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats.
Identities = 103/262 (39%), Positives = 137/262 (52%), Gaps = 12/262 (4%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++G+ + LE+LP SVD+ FADPPY L G SWD F A
Sbjct: 25 LVQGDCVEALERLPPHSVDVAFADPPYMLSNGG-STCQGGRRTSVNKGSWDASGGFAADH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
AF WL A R+VLKP+GTLWV G+ H IF IG +Q + F +LN + W K N PN
Sbjct: 84 AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQEMGFHLLNTVTWYKPNASPNLAC 143
Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDW----------LIPICSG 191
R F ++ E L+WASP + FNY A+K AN QMR W + S
Sbjct: 144 RFFTHSTEILLWASPMKTRPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 203
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ HPTQKP ALL R+L +S PGD++LDPF GSGT+G A + F+G+
Sbjct: 204 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSGTTGVAALRAGCRFLGL 263
Query: 252 EMKQDYIDIATKRIASVQPLGN 273
E Y+D+A +R+ +
Sbjct: 264 ERDPSYVDLAARRLRATAIDPE 285
>gi|315612933|ref|ZP_07887844.1| adenine specific DNA methylase [Streptococcus sanguinis ATCC 49296]
gi|315315043|gb|EFU63084.1| adenine specific DNA methylase [Streptococcus sanguinis ATCC 49296]
Length = 598
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/407 (18%), Positives = 153/407 (37%), Gaps = 73/407 (17%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL---------YRPDHSL 64
W +KI G+++ V+ + + +DLI+ DPP++ + + + D S
Sbjct: 55 DNWINKIFWGDNLQVMSHMLKEYRGKIDLIYIDPPFDSKADYKKKIEIKGVGKTEADSSS 114
Query: 65 VDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-L 121
+ D W + + Y F L+ R +L +GT+++ +H + ++
Sbjct: 115 FEEKQYGDIW----TNDEYLQFMYERLILLRELLSDSGTIFLHCDWHKSHHLRMLMDEVF 170
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ D + + + + F+ H+T++ S + + + + +
Sbjct: 171 SPNNFIDEIVWGYEDIGSRAVKYFKRKHDTILMYSKTASEDRTFNILRKRLSESTIKRYQ 230
Query: 182 SDWLIPICSGSERLRNKD------------------------------------------ 199
S + ++L++ +
Sbjct: 231 SYFDDDGKISYQKLKDTNPGVFAKLKGIPEDLSETWLDINNGAPLSDWWVDISALKNGFA 290
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+PTQKPEALL RI+++S+ PGD++ D F GSGT+ AVA +L R FIG ++ +
Sbjct: 291 EATGYPTQKPEALLERIIMASSNPGDLVFDCFMGSGTTQAVAMRLGRRFIGSDINLGAVQ 350
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA------QGNIS 313
ATKR+ ++ E N R I+ ++ A +
Sbjct: 351 TATKRLINLAKEIQ---LDDIYDNLEVYNVNNYDFFRNPIEAKNLIVEALEIQPFKQGNI 407
Query: 314 ATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
DG ++ ++ ++R+ K E + +EK+ E +
Sbjct: 408 WDGELDGRMV---KIMPVNRIATKADLEELKANLPYKTYEKIKEENP 451
>gi|153005643|ref|YP_001379968.1| DNA methylase N-4/N-6 domain-containing protein [Anaeromyxobacter
sp. Fw109-5]
gi|152029216|gb|ABS26984.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 282
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 108/259 (41%), Positives = 138/259 (53%), Gaps = 9/259 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++G+ I LE LP SVD+ FADPPY L G WD
Sbjct: 25 LVQGDCIEALEALPPHSVDVAFADPPYMLSNGGT-TCQSGRRTSVNKGQWDASRGVVEDH 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
AF WL A RRVLKP+GTLWV G+ H IF IG +Q L + +LN I W K N PN
Sbjct: 84 AFQTRWLTAVRRVLKPSGTLWVSGTQHVIFSIGFAMQELGYHLLNTITWYKPNASPNLAC 143
Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN---- 197
R F ++ E L+WASP G+ FNY A+KA N QMR W IP G + + +
Sbjct: 144 RFFTHSTEILLWASPMRTRPLGHRFNYKAMKAENGGKQMRDLWQIPAPEGDQVVWSVPTP 203
Query: 198 ---KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ HPTQKP ALL R+L SS GD++LDPF GSGT+G A K F+G+E
Sbjct: 204 GPREKVHGRHPTQKPLALLERVLASSAAAGDLVLDPFSGSGTTGVAAVKAGCRFLGLERD 263
Query: 255 QDYIDIATKRIASVQPLGN 273
Y+D+A +R+ + Q
Sbjct: 264 PAYVDLAARRMRAAQLDPE 282
>gi|152981599|ref|YP_001354977.1| DNA modification methylase [Janthinobacterium sp. Marseille]
gi|151281676|gb|ABR90086.1| DNA modification methylase [Janthinobacterium sp. Marseille]
Length = 273
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 27/280 (9%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W+D+I ++++ L ++P ++DLI ADPPY L + D +DA
Sbjct: 4 WRDRIFCEDALAGLARIPDAAIDLIIADPPYGLGKDYG---NDSDKLDA----------- 49
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+AY ++ W+ A LKPNG+L++ ++ + ML+ +LN+IVW + P
Sbjct: 50 DAYLSWMEQWIDAALPKLKPNGSLYIFLTWRYSPEVFVMLKKRMT-MLNEIVWDRRVPSM 108
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIP 187
R+F + H+T+ + + + T + + +
Sbjct: 109 GGGTRKFSSVHDTIGFFAKAKDYYFDLDAVRIPYDAETKKARSRSIFVGAKWLEMGYNPK 168
Query: 188 ICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL + E+ HPTQKP ++ R+L +S PG ++LDPF GSGT+ A AK+ R
Sbjct: 169 DVWSVSRLHKEHRERADHPTQKPLEIVERMLKASCPPGGVVLDPFMGSGTTAAAAKRCGR 228
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
F+G E+ +Y ++ KR+ +++ + + G+ P
Sbjct: 229 HFVGFELNAEYCEMIEKRLQALESIPASNIAPAPGQELNP 268
>gi|162447937|ref|YP_001621069.1| DNA methylase [Acholeplasma laidlawii PG-8A]
gi|161986044|gb|ABX81693.1| DNA methylase [Acholeplasma laidlawii PG-8A]
Length = 256
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 99/251 (39%), Positives = 152/251 (60%), Gaps = 10/251 (3%)
Query: 18 EWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++ K+ G+S +L++L KSVD+IFADPPY L NG + +V +WDK
Sbjct: 7 DNRNAKLYLGDSFEILDELDEKSVDMIFADPPYFLSNNG-ITCQGGKMVSVNKATWDKTE 65
Query: 77 -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ E + WL C+R+LK GT+W+ G+ HNI+ IG L+ F I+N+I W K+N
Sbjct: 66 MTIEEKIKYNTTWLNKCKRILKDTGTIWISGTLHNIYIIGVCLELEGFQIINNITWEKTN 125
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P P+ + F ++ ET++WA K F+Y +K+ N + QM+ W + SE+
Sbjct: 126 PPPHLARKAFTHSTETVLWARK--KGSKNYFDYSLMKSLNNNKQMKDVWRFSLTKPSEKR 183
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
K HPTQKP ALL RI+++STK GD++LDPF GSGT+G + L R +IGI+ ++
Sbjct: 184 LGK-----HPTQKPLALLERIILASTKEGDVVLDPFSGSGTTGVASIMLNRKYIGIDFEK 238
Query: 256 DYIDIATKRIA 266
DY++++ KR+
Sbjct: 239 DYLNLSIKRLE 249
>gi|187251096|ref|YP_001875578.1| DNA methylase N-4/N-6 domain-containing protein [Elusimicrobium
minutum Pei191]
gi|186971256|gb|ACC98241.1| DNA methylase N-4/N-6 domain protein [Elusimicrobium minutum
Pei191]
Length = 266
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 100/255 (39%), Positives = 151/255 (59%), Gaps = 5/255 (1%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I GNSI V++ P +S D+IFADPPY L G SWDK + F++
Sbjct: 14 KLILGNSIDVIKSFPDESCDMIFADPPYMLSNGG-FTVQSGKRASVNKGSWDKSNGFDSD 72
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F W+ C+R+LK NGT+W+ G+YH+I++ G LQ N+ ILNDI W K N PN
Sbjct: 73 FEFHNNWIKECKRILKKNGTIWISGTYHSIYQCGFALQKNNYHILNDIAWFKPNAAPNLS 132
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL---KAANEDVQMRSDWLIPICSGSERLRNK 198
R F +HETLIWA + K +TFNYD + + + ++ + + + + + +++
Sbjct: 133 CRFFTASHETLIWARKN-KIGKHTFNYDKVKNGIWSEDFLKKPNLQMRSVWAINTPKKSE 191
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP L+ RI++SSTK D+ILDPF GS T+G A +R+FIGI+++Q Y+
Sbjct: 192 KVFGKHPTQKPFDLMRRIILSSTKENDLILDPFTGSSTTGLAATYYKRNFIGIDIEQKYL 251
Query: 259 DIATKRIASVQPLGN 273
+++ KR ++ +
Sbjct: 252 ELSKKRYEQLRSMKK 266
>gi|260577363|ref|ZP_05845334.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
gi|259020436|gb|EEW23761.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
Length = 310
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 84/255 (32%), Positives = 124/255 (48%), Gaps = 10/255 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF------ 75
++ GN I ++ +LP +SVD+I ADPPYN +L + + SW K
Sbjct: 54 RVYHGNFIEMVSQLPDQSVDIIIADPPYNASKGNELTMQYGT-LPGFGGSWRKIAQVWDD 112
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
S Y AFT +WL RRVLKP G++WV G+YH+ +Q L I+N+IVW K N
Sbjct: 113 MSLHDYLAFTLSWLTEARRVLKPTGSMWVHGTYHSAGVTNVAMQMLEVEIINEIVWYKRN 172
Query: 136 PMPNFRGRRFQNAHETLIWAS---PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
PN GRR +HET++WA Y + + ++ +
Sbjct: 173 SFPNLAGRRLTASHETILWAHRGGKRAYRFNYEHSKFGDFSDDDLKSPGKQMRTVWDLPN 232
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ R++ HP QKP L R + S PGD+ L PF GSG+ A++ FIG +
Sbjct: 233 NKPRHEQAHGKHPAQKPVRLAKRFIELSAGPGDLCLVPFAGSGSECVAAQEAGLHFIGFD 292
Query: 253 MKQDYIDIATKRIAS 267
+ Y++IA R++
Sbjct: 293 TDESYVEIARARLSR 307
>gi|315453579|ref|YP_004073849.1| DNA methylase N-4/N-6 domain-containing protein [Helicobacter felis
ATCC 49179]
gi|315132631|emb|CBY83259.1| DNA methylase N-4/N-6 domain [Helicobacter felis ATCC 49179]
Length = 266
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 104/243 (42%), Positives = 144/243 (59%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ + VL L VDLIFADPPY L G L +V +WDK E
Sbjct: 14 KLYHADCKEVLPHLQ-GQVDLIFADPPYFLSNGG-LSIQSGQIVSVDKGAWDKSQGLEHM 71
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
AF WL + LKP G+L++ +YHN+F +G LQ+L F ++N I W KSNP PNF
Sbjct: 72 HAFNMEWLGLAKDALKPTGSLFISATYHNLFSLGLALQSLGFKLINLITWHKSNPPPNFS 131
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R +A E ++WA SPK + FNY+ +KA NE+ QMR W +P + E+ K
Sbjct: 132 CRTLVHASEQILWARKSPK-HAHIFNYEHMKALNENKQMRDVWTLPAIAPWEKKLGK--- 187
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP +LL+R++V +++ +I DPF GSG++G A L RSF+GIE +Q++I++A
Sbjct: 188 --HPTQKPLSLLTRLIVMASQQESLICDPFSGSGSTGIAANLLGRSFVGIEREQEFIELA 245
Query: 262 TKR 264
TKR
Sbjct: 246 TKR 248
>gi|229175133|ref|ZP_04302649.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus MM3]
gi|228608269|gb|EEK65575.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus MM3]
Length = 607
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 75/412 (18%), Positives = 152/412 (36%), Gaps = 74/412 (17%)
Query: 18 EWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDS 71
+W +KI G+++ V+ L + V L++ DPP++ + + + + D +
Sbjct: 52 DWINKIFWGDNLQVMSHLLKEYRGKVKLVYIDPPFDSKAFYKKQIKVKGKNINNDYNSFE 111
Query: 72 WDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
++S + + F L+ R +L +G++++ Y + +I ++ +
Sbjct: 112 EKQYSDMWVNDEFLQFLYERLILIRELLSDDGSIYLHCDYRKVHQIRCIMDEVFGEDNFL 171
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
S + ++ +H +++ + L+ +E +
Sbjct: 172 NSIVWSFSTRSSIKTSWKRSHHDILFYKKGKNPVYNWDDEMVLEPLSESTI--KKYKHED 229
Query: 189 CSGSERL-------------RNKDGE---------------------------------- 201
G RL ++ D +
Sbjct: 230 EIGKYRLNGRFIKDSPIKGAKDVDPKWEKTNPELVVRDYLREGKVASDYFFIDIENQSAS 289
Query: 202 --KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+PTQKPE LL +++ +S+KPGDI++D F GSGT+ AVA K R FIG ++ I
Sbjct: 290 TRTDYPTQKPEELLYKLISASSKPGDIVMDCFMGSGTTLAVAMKTGRKFIGADINLGSIQ 349
Query: 260 IATKRIASVQPLGNIELTVLTGKRT-----EPRVAFNLLVERGLIQPGQILTNA------ 308
TKR+ V+ N + + E N + R ++ ++L A
Sbjct: 350 TTTKRLLKVRNEINSNNNIFEIESELFTGIEVYNVNNYDIFRNPVEAKELLIEALEIQPL 409
Query: 309 QGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
GN DG ++ ++ I+R+ K ++ ++ E +
Sbjct: 410 DGNNVFDGEKDGYMV---KILPINRIATKADLNDIIANLDYKTLEIRQRENP 458
>gi|160888276|ref|ZP_02069279.1| hypothetical protein BACUNI_00686 [Bacteroides uniformis ATCC 8492]
gi|317480155|ref|ZP_07939265.1| DNA methylase [Bacteroides sp. 4_1_36]
gi|156862222|gb|EDO55653.1| hypothetical protein BACUNI_00686 [Bacteroides uniformis ATCC 8492]
gi|316903702|gb|EFV25546.1| DNA methylase [Bacteroides sp. 4_1_36]
Length = 290
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 100/261 (38%), Positives = 147/261 (56%), Gaps = 8/261 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ I +L++ + D+IFADPPY L G + +V WDK + E
Sbjct: 13 TLLHGDCIELLKQF-SFKFDMIFADPPYFLSNGG-ISVQSGKMVCVDKGEWDKGGTPEYI 70
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D+F RAW+ C+ LK NGT+W+ G+YHNIF I +L L F ILN + W K+NP PN
Sbjct: 71 DSFNRAWISECQNKLKENGTIWISGTYHNIFSIANILTELGFKILNVVTWAKTNPPPNIS 130
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ E +IWA S K Y +NY +K N + QM W +P + E+ K
Sbjct: 131 CRYFTHSTEFIIWARKSAKITHY-YNYSIMKQINSNKQMTDVWQLPAIARWEKSCGK--- 186
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ++LSRI+++ST+ G ILDPF GS T+G A L R F+GI+ +++Y+ ++
Sbjct: 187 --HPTQKPLSVLSRIILASTRGGAWILDPFTGSSTTGIAANLLGRRFLGIDREEEYLILS 244
Query: 262 TKRIASVQPLGNIELTVLTGK 282
R ++ + L K
Sbjct: 245 KNRKKEIEQIAKFSLYHKKIK 265
>gi|328948545|ref|YP_004365882.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
gi|328448869|gb|AEB14585.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
Length = 292
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 99/254 (38%), Positives = 147/254 (57%), Gaps = 11/254 (4%)
Query: 14 NSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+S+++ ++ +++G+ + +L + D+IFADPPY L G + V
Sbjct: 3 HSLYKSLNRDFTLLQGDCVELLNQF-DFKFDMIFADPPYFLSNGG-ISVQSGKQVSVNKG 60
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
WDK FE + F R WL ACR LK +GT+W+ G+YHNIF + ML L+F ILN +
Sbjct: 61 GWDKSHGFEKDNEFNRKWLSACRSHLKDDGTIWISGTYHNIFSVALMLNELDFRILNCVT 120
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
W K+NP PN R F ++ E ++WA S K Y FNY+ +K N QMR W++P +
Sbjct: 121 WAKTNPPPNLSCRFFTHSTEFILWARKSKKVPHY-FNYELMKEINGGTQMRDLWILPAIA 179
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
E+ K HPTQKP LL+RI+++STK ILDPF GS T+G A L R F+G
Sbjct: 180 KWEKSCGK-----HPTQKPLPLLARIILASTKENVWILDPFTGSSTTGIAASLLNRRFLG 234
Query: 251 IEMKQDYIDIATKR 264
I+ + ++++++ R
Sbjct: 235 IDRETEFLELSKAR 248
>gi|134096223|ref|YP_001101298.1| putative DNA-methyltransferase [Herminiimonas arsenicoxydans]
gi|133740126|emb|CAL63177.1| Putative DNA methylase [Herminiimonas arsenicoxydans]
Length = 269
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 27/282 (9%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +W++++ ++++ L ++P +VDLI ADPPY L + D + A
Sbjct: 1 MSDWRNRVFCEDALAGLARIPDAAVDLIIADPPYGLGKDYG---NDSDKLAA-------- 49
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
EAY + W+ A LKPNG+L++ ++ + ML+ ++N+I+W +
Sbjct: 50 ---EAYLQWMEQWIDAALPKLKPNGSLYIFLTWRYSPEVFVMLKKRMT-MINEIIWDRRV 105
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDW 184
P RRF + H+T+ + + + T + + +
Sbjct: 106 PSMGGSTRRFSSVHDTVGFFAGAKDYYFDLDAIRVPYDAVTKKARSRSIFVGAKWLELGY 165
Query: 185 LIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
RL + E+ HPTQKP ++ R+L +S P ++LDPF GSGT+ AK+
Sbjct: 166 NPKDVWSVSRLHREHRERADHPTQKPLEIIERMLKASCPPDGVVLDPFMGSGTTAVAAKR 225
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
R F+G E+ +Y + KR+A++ PL ++ E
Sbjct: 226 CGRHFVGFELNAEYCALIEKRLAALVPLETVDAETAGSAIVE 267
>gi|300313354|ref|YP_003777446.1| DNA-methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300076139|gb|ADJ65538.1| DNA-methyltransferase (DNA-modification methylase) protein
[Herbaspirillum seropedicae SmR1]
Length = 276
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 30/272 (11%)
Query: 19 WKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W D++ +++S L ++P SVDL+ ADPPY L + + DK
Sbjct: 13 WLDRVFCEDALSAVGGLARIPDGSVDLMIADPPYGLGKDYG-------------NDSDKL 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ AY A+T W+ A LKPNG+L++ ++ N I ML+ ++N+I+W +
Sbjct: 60 DT-AAYLAWTEQWVDAALPKLKPNGSLYIFLTWRNSPEIFVMLKQRMT-MINEIIWDRRV 117
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDW 184
P RR+ + H+T+ + + + T + + +
Sbjct: 118 PSMGGSTRRYSSVHDTIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGY 177
Query: 185 LIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
RL + E+ HPTQKP ++ R++ +S PG ++LDPF GSGT+ A++
Sbjct: 178 NPKDVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARR 237
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
R F G E+ DY ++ +R+ ++ P +
Sbjct: 238 CGRHFTGFELNPDYCELIRQRLDALAPAHQDD 269
>gi|323173479|gb|EFZ59108.1| hypothetical protein ECLT68_1794 [Escherichia coli LT-68]
Length = 315
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 33/279 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
FIGIE+ +YI + +R+ EL + +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERRA 276
>gi|220918133|ref|YP_002493437.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955987|gb|ACL66371.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 286
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 103/262 (39%), Positives = 136/262 (51%), Gaps = 12/262 (4%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++G+ + LE+LP SVD+ FADPPY L G SWD F A
Sbjct: 26 LVQGDCVEALERLPPHSVDVAFADPPYMLSNGG-STCQGGRRTSVNKGSWDASGGFAADH 84
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
AF WL A R+VLKP+GTLWV G+ H IF IG +Q L F +LN + W K N PN
Sbjct: 85 AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQELGFHLLNTVTWYKPNASPNLAC 144
Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDW----------LIPICSG 191
R F ++ E L+WASP + FNY A+K AN QMR W + S
Sbjct: 145 RFFTHSTEILLWASPMKARPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 204
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ HPTQKP ALL R+L +S PGD++LDPF GS T+G A + F+G+
Sbjct: 205 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSATTGVAALRAGCRFLGL 264
Query: 252 EMKQDYIDIATKRIASVQPLGN 273
E Y+D+A +R+ +
Sbjct: 265 ERDPGYVDLAARRLRATTIDPE 286
>gi|197123344|ref|YP_002135295.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. K]
gi|196173193|gb|ACG74166.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. K]
Length = 286
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 103/262 (39%), Positives = 136/262 (51%), Gaps = 12/262 (4%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++G+ + LE+LP SVD+ FADPPY L G SWD F A
Sbjct: 26 LVQGDCVEALERLPPHSVDVAFADPPYMLSNGG-STCQGGRRTSVNKGSWDASGGFAADH 84
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
AF WL A R+VLKP+GTLWV G+ H IF IG +Q L F +LN + W K N PN
Sbjct: 85 AFQARWLQAVRKVLKPSGTLWVSGTQHVIFSIGYAMQELGFHLLNTVTWYKPNASPNLAC 144
Query: 143 RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDW----------LIPICSG 191
R F ++ E L+WASP + FNY A+K AN QMR W + S
Sbjct: 145 RFFTHSTEILLWASPMKARPLAHRFNYRAMKTANGGKQMRDLWEIADRPAPGGDQVVWSV 204
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ HPTQKP ALL R+L +S PGD++LDPF GS T+G A + F+G+
Sbjct: 205 PTPGPREKVHGRHPTQKPLALLERVLAASAAPGDLVLDPFSGSATTGVAALRAGCRFLGL 264
Query: 252 EMKQDYIDIATKRIASVQPLGN 273
E Y+D+A +R+ +
Sbjct: 265 ERDPGYVDLAARRLRATTIDPE 286
>gi|331649063|ref|ZP_08350151.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
gi|331042810|gb|EGI14952.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
Length = 296
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+KLPA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ + + +E ++ K YTFN DA+ N + G
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 179
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIELNSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|330909313|gb|EGH37827.1| adenine-specific methyltransferase [Escherichia coli AA86]
Length = 294
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+KLPA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ + + +E ++ K YTFN DA+ N + G
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIELNSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|117625553|ref|YP_858876.1| putative methyltransferase [Escherichia coli APEC O1]
gi|161486097|ref|NP_755894.2| putative methyltransferase [Escherichia coli CFT073]
gi|162138359|ref|YP_542679.2| putative methyltransferase [Escherichia coli UTI89]
gi|218560331|ref|YP_002393244.1| methyltransferase [Escherichia coli S88]
gi|218691553|ref|YP_002399765.1| putative methyltransferase [Escherichia coli ED1a]
gi|227887988|ref|ZP_04005793.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
coli 83972]
gi|300991060|ref|ZP_07179481.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
gi|301047882|ref|ZP_07194929.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
gi|306816395|ref|ZP_07450527.1| putative methyltransferase [Escherichia coli NC101]
gi|331659551|ref|ZP_08360493.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
gi|115514677|gb|ABJ02752.1| putative adenine-specific methylase YhdJ [Escherichia coli APEC O1]
gi|218367100|emb|CAR04873.1| methyltransferase [Escherichia coli S88]
gi|218429117|emb|CAR09924.1| methyltransferase [Escherichia coli ED1a]
gi|222034978|emb|CAP77721.1| Uncharacterized adenine-specific methylase yhdJ [Escherichia coli
LF82]
gi|227835384|gb|EEJ45850.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
coli 83972]
gi|281180304|dbj|BAI56634.1| putative methyltransferase [Escherichia coli SE15]
gi|294489786|gb|ADE88542.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
IHE3034]
gi|300300225|gb|EFJ56610.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
gi|300406981|gb|EFJ90519.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
gi|305849960|gb|EFM50419.1| putative methyltransferase [Escherichia coli NC101]
gi|307555356|gb|ADN48131.1| DNA methylase [Escherichia coli ABU 83972]
gi|307625138|gb|ADN69442.1| putative methyltransferase [Escherichia coli UM146]
gi|312947819|gb|ADR28646.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
gi|315294813|gb|EFU54156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
gi|323951218|gb|EGB47093.1| DNA methylase [Escherichia coli H252]
gi|323957590|gb|EGB53304.1| DNA methylase [Escherichia coli H263]
gi|324009091|gb|EGB78310.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
gi|331054133|gb|EGI26162.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
Length = 294
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+KLPA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ + + +E ++ K YTFN DA+ N + G
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|237705980|ref|ZP_04536461.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|26110282|gb|AAN82468.1|AE016767_228 Hypothetical adenine-specific methylase yhdJ [Escherichia coli
CFT073]
gi|91074267|gb|ABE09148.1| hypothetical adenine-specific methylase YhdJ [Escherichia coli
UTI89]
gi|226899020|gb|EEH85279.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
Length = 296
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+KLPA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ + + +E ++ K YTFN DA+ N + G
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 179
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|167631056|ref|YP_001681555.1| DNA methylase [Heliobacterium modesticaldum Ice1]
gi|167593796|gb|ABZ85544.1| DNA methylase [Heliobacterium modesticaldum Ice1]
Length = 304
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 80/268 (29%), Positives = 125/268 (46%), Gaps = 36/268 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I G+++ + +LPA+SVDLIFADPPY L S + + + E
Sbjct: 45 DRIYCGDALVGMSRLPARSVDLIFADPPYF-GLKKDFGSGKRS---------NPWKTIEE 94
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y +TRAW R+LKP+G ++V + R+ ML + + R+
Sbjct: 95 YMEWTRAWFAEAARLLKPHGAIYVCCDWEYSGRVQEMLSDSFDVLNRITWRREKGRG--- 151
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-----SDWLIPICSGSERL 195
+ ++N E + +A ++ Y FN + +K E + ER
Sbjct: 152 AAKNWKNNMEDIWFAV--VDSRQYIFNLEDVKFRKEIIAPYTTTDGKPKDWVETETGERF 209
Query: 196 R----------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
R + HPTQKPE L+ R +++S+ PG ++LDPF GSGT+ A
Sbjct: 210 RMTCPPNIWTDLTVPFWSMPENTPHPTQKPEKLVERCILASSNPGALVLDPFMGSGTTAA 269
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
VA++L R FIG E +DY+ +A KR+
Sbjct: 270 VARRLGRHFIGFETNEDYVRLAMKRLDR 297
>gi|238913534|ref|ZP_04657371.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 287
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 33/286 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +PK+ YTFN DA+ + + G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
FIGIE+ +Y+ + +R++ EL + ++ +
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKNTKTCPKSS 283
>gi|224585184|ref|YP_002638983.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224469712|gb|ACN47542.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 294
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 33/280 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +PK+ YTFN DA+ + + G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA + R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAESGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
FIGIE+ +Y+ + +R++ EL + ++T+
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 277
>gi|315289031|gb|EFU48429.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
Length = 294
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 88/289 (30%), Positives = 140/289 (48%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+ LPA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKNLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ + + +E ++ K YTFN DA+ N + G
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALINYRKNPPQPYNHQKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|288929718|ref|ZP_06423561.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 317
str. F0108]
gi|288328819|gb|EFC67407.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 317
str. F0108]
Length = 301
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 97/270 (35%), Positives = 141/270 (52%), Gaps = 8/270 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++GN I +L + + IFADPPY L G + +V WDK + +
Sbjct: 15 LLQGNCIELLGQF-DFKFNTIFADPPYFLSNGG-ISCQSGEVVSVNKGDWDKSHGADEDN 72
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL CR L NGT+WV G+YHNIF + L L + ILN I W K+NP PN
Sbjct: 73 LFNRRWLEVCRDKLADNGTIWVSGTYHNIFSVANCLAELGYKILNVITWAKTNPPPNISC 132
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ E +IWA SPK Y FNY +K N++ QM W +P + E+ K
Sbjct: 133 RYFTHSSEFVIWARKSPKVPHY-FNYQLMKEMNDNKQMTDVWHLPAIAPWEKTCTK---- 187
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP LL+RI+++ST+P D +LDPF GS T+G A R + GIE + +++I+
Sbjct: 188 -HPTQKPLGLLTRIILASTRPNDWVLDPFAGSSTTGIAANLFGRRYFGIEQEHHFLEISK 246
Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
R ++ + + + ++
Sbjct: 247 ARHMEIEQPDVATIYIDKILKQLRKLNNGY 276
>gi|62181894|ref|YP_218311.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62129527|gb|AAX67230.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322716384|gb|EFZ07955.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 296
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 33/280 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 18 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 64 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +PK+ YTFN DA+ + + G
Sbjct: 122 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 179
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA + R
Sbjct: 180 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAESGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
FIGIE+ +Y+ + +R++ EL + ++T+
Sbjct: 240 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 279
>gi|323178558|gb|EFZ64134.1| hypothetical protein ECOK1180_2289 [Escherichia coli 1180]
Length = 283
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 33/279 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
FIGIE+ +YI + +R+ EL + +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERPA 276
>gi|320194748|gb|EFW69378.1| Adenine-specific methyltransferase [Escherichia coli WV_060327]
Length = 294
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 88/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+KLPA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|218555826|ref|YP_002388739.1| putative methyltransferase [Escherichia coli IAI1]
gi|218362594|emb|CAR00219.1| methyltransferase [Escherichia coli IAI1]
Length = 294
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + + W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEDWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|110643506|ref|YP_671236.1| putative methyltransferase [Escherichia coli 536]
gi|191173825|ref|ZP_03035346.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
F11]
gi|300979712|ref|ZP_07174662.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
gi|110345098|gb|ABG71335.1| hypothetical adenine-specific methylase YhdJ [Escherichia coli 536]
gi|190905875|gb|EDV65493.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
F11]
gi|300307930|gb|EFJ62450.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
gi|315300926|gb|EFU60146.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
gi|324015871|gb|EGB85090.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
Length = 294
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+KLPA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|198284865|ref|YP_002221186.1| DNA methylase N-4/N-6 domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665780|ref|YP_002427548.1| type III restriction-modification system, Mod subunit
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198249386|gb|ACH84979.1| DNA methylase N-4/N-6 domain protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218517993|gb|ACK78579.1| type III restriction-modification system, Mod subunit
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 751
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 77/407 (18%), Positives = 152/407 (37%), Gaps = 75/407 (18%)
Query: 19 WKDKIIKGNSISVLEKLPAK----SV------DLIFADPPYNLQLNGQL----------Y 58
W +K+I G++ +L L + + LI+ DPP+++ + +
Sbjct: 92 WTNKLIWGDNKLILSSLKSGALRRQIEDAGGLKLIYIDPPFDVGADFSMDVEIGGETFHK 151
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ A D+W + + ++ + L+ R ++ +G+++V + + L
Sbjct: 152 EANLLEQIAYRDTWGRGAD--SFISMIYERLILMRDLMAEDGSIYVHCDWRLASLVRIAL 209
Query: 119 QNLN--------FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK-------- 162
+ N+I+W S + + H T+++ S +
Sbjct: 210 DEVFGKGGDNEAPGFRNEIIWYFSQGGKGV--KHWARKHNTILYYSKTDSPIFNQDAVRL 267
Query: 163 GYTFNYDALKAANEDVQMRSD-----WLIPICSGSERLRNK------------------- 198
+T + K N +M D ++ +G ++L
Sbjct: 268 PFTPHKQDEKGENYGGRMGVDEDGRRYVEKWGTGKKKLYRYYLDEGKLPEDVWTDIQSIQ 327
Query: 199 ---DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+PTQKPEALL RI+ +S+K GD++ D F GSGT+ AVA+KL R +I ++ +
Sbjct: 328 SAATERMDYPTQKPEALLERIIKASSKEGDLVADFFVGSGTTAAVAEKLGRKWIATDLGK 387
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
I KR+ VQ + R + + + G L+ Q + T
Sbjct: 388 FGIHTTRKRLIGVQ---REKKAAEQDFRAFEVLNLGRYERQAYLNVGGRLSGEQKAQALT 444
Query: 316 VCADGTLISGTELGSIHRVGAKVSGSETCNGWN-FWYFEKLGELHSI 361
+ + ++ + G+E + F++ + G L I
Sbjct: 445 QKEN---EFRDLILRAYK-ATEFGGTEGTQAQDGFFHGARNGRLVVI 487
>gi|325299176|ref|YP_004259093.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
salanitronis DSM 18170]
gi|324318729|gb|ADY36620.1| DNA methylase N-4/N-6 domain protein [Bacteroides salanitronis DSM
18170]
Length = 293
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 97/265 (36%), Positives = 139/265 (52%), Gaps = 8/265 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+ I +L D+IFADPPY+L G + +V WD+ +E
Sbjct: 14 TLLKGDCIELLHSF-DFKFDMIFADPPYHLSNGG-ISVQSGKMVSVNKGDWDRSKGYEED 71
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F R+W+ ACR LK NGT+W+ G+YHNIF + L L F ILN I W K+NP PN
Sbjct: 72 YLFDRSWIEACRNKLKSNGTIWISGTYHNIFSVARCLTELGFKILNCITWEKTNPPPNLS 131
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ F ++ E ++WA K Y FNY+ +K N QMR W +P E+ K
Sbjct: 132 CKYFTHSAEYILWARKEQKVPHY-FNYELMKKINGGTQMRDVWRLPAIVRWEKSCGK--- 187
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP +LSRI+ +ST P ILDPF GS T+G A L R F+GI+ ++++ ++
Sbjct: 188 --HPTQKPLCVLSRIIQASTLPSAWILDPFTGSSTTGIAANLLGRRFLGIDQNEEFLKMS 245
Query: 262 TKRIASVQPLGNIELTVLTGKRTEP 286
R + L + ++
Sbjct: 246 KARREEINDTSKRTLYLEKLQKQAQ 270
>gi|325498841|gb|EGC96700.1| methyltransferase [Escherichia fergusonii ECD227]
Length = 294
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 34/295 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+++S L+KLP++SVDLIFADPPYN+ N D + +SWD +
Sbjct: 18 RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ + C RVLK G+++++ S N+ I L+ + + + +
Sbjct: 64 RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWID--LECRKLFTIKSRIIWAYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ F + +E ++ K YTFN DA N S +
Sbjct: 122 KKYFGSMYEPILMMVKDAK--NYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA + R
Sbjct: 180 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGKVAVETGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
FIGIE+ +Y+ + +R+ EL + KR + RG + P
Sbjct: 240 RFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVK-KRKTRNQSKKSQNSRGSLLP 293
>gi|16762145|ref|NP_457762.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16766681|ref|NP_462296.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29143634|ref|NP_806976.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|161616411|ref|YP_001590376.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552904|ref|ZP_02346655.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167993974|ref|ZP_02575067.1| DNA methylase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168233973|ref|ZP_02659031.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|168239415|ref|ZP_02664473.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168245210|ref|ZP_02670142.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168463376|ref|ZP_02697293.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|168822713|ref|ZP_02834713.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194442303|ref|YP_002042642.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194449918|ref|YP_002047414.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194469895|ref|ZP_03075879.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194736425|ref|YP_002116334.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197251530|ref|YP_002148310.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265136|ref|ZP_03165210.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|198244548|ref|YP_002217356.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200389115|ref|ZP_03215727.1| DNA methylase [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|204931162|ref|ZP_03221956.1| DNA methylase [Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|207858634|ref|YP_002245285.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213162245|ref|ZP_03347955.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213428297|ref|ZP_03361047.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213649888|ref|ZP_03379941.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213853025|ref|ZP_03382557.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289824094|ref|ZP_06543691.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25286118|pir||AG0913 probable adenine-specific DNA-modification methylase STY3566
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16421947|gb|AAL22255.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16504448|emb|CAD07901.1| putative adenine-specific DNA-modification methylase [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29139269|gb|AAO70836.1| putative adenine-specific DNA-modification methylase [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|161365775|gb|ABX69543.1| hypothetical protein SPAB_04220 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194400966|gb|ACF61188.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194408222|gb|ACF68441.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194456259|gb|EDX45098.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194711927|gb|ACF91148.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195633408|gb|EDX51822.1| DNA methylase [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197215233|gb|ACH52630.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197243391|gb|EDY26011.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197287877|gb|EDY27265.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197939064|gb|ACH76397.1| DNA methylase [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|199606213|gb|EDZ04758.1| DNA methylase [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|204319929|gb|EDZ05135.1| DNA methylase [Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205322540|gb|EDZ10379.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205328111|gb|EDZ14875.1| DNA methylase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205332006|gb|EDZ18770.1| DNA methylase [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|205336037|gb|EDZ22801.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205340921|gb|EDZ27685.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|206710437|emb|CAR34795.1| putative adenine-specific DNA-modification methylase [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|261248549|emb|CBG26387.1| putative adenine-specific DNA-modification methylase [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267995595|gb|ACY90480.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159935|emb|CBW19454.1| putative adenine-specific DNA-modification methylase [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312914414|dbj|BAJ38388.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320087834|emb|CBY97598.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321225192|gb|EFX50251.1| Adenine-specific methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322614527|gb|EFY11457.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618251|gb|EFY15142.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625964|gb|EFY22778.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626734|gb|EFY23531.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631302|gb|EFY28062.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635431|gb|EFY32145.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643431|gb|EFY39995.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647265|gb|EFY43763.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649729|gb|EFY46156.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655597|gb|EFY51903.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658373|gb|EFY54638.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664403|gb|EFY60599.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667377|gb|EFY63539.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674625|gb|EFY70717.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675744|gb|EFY71817.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682380|gb|EFY78403.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684755|gb|EFY80756.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323131748|gb|ADX19178.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323196167|gb|EFZ81327.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196733|gb|EFZ81878.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204370|gb|EFZ89379.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207718|gb|EFZ92665.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323209992|gb|EFZ94897.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214293|gb|EFZ99046.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219030|gb|EGA03536.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323225048|gb|EGA09301.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230400|gb|EGA14519.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233376|gb|EGA17470.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239413|gb|EGA23463.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242336|gb|EGA26362.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247310|gb|EGA31275.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250400|gb|EGA34284.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256848|gb|EGA40563.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263868|gb|EGA47387.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264111|gb|EGA47619.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323271630|gb|EGA55049.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326625135|gb|EGE31480.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|332990244|gb|AEF09227.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 294
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 33/280 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +PK+ YTFN DA+ + + G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
FIGIE+ +Y+ + +R++ EL + ++T+
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 277
>gi|331643962|ref|ZP_08345093.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
gi|606203|gb|AAA58066.1| ORF_o296 [Escherichia coli str. K-12 substr. MG1655]
gi|331037433|gb|EGI09657.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
Length = 296
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|89110022|ref|AP_003802.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
W3110]
gi|90111566|ref|NP_417728.4| DNA adenine methyltransferase, SAM-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|170082790|ref|YP_001732110.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
gi|238902361|ref|YP_002928157.1| putative methyltransferase [Escherichia coli BW2952]
gi|256024164|ref|ZP_05438029.1| putative methyltransferase [Escherichia sp. 4_1_40B]
gi|300948348|ref|ZP_07162456.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
gi|301028293|ref|ZP_07191553.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
gi|301647038|ref|ZP_07246870.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
gi|307139950|ref|ZP_07499306.1| putative methyltransferase [Escherichia coli H736]
gi|3915983|sp|P28638|YHDJ_ECOLI RecName: Full=DNA adenine methyltransferase YhdJ
gi|85676053|dbj|BAE77303.1| predicted methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|87082238|gb|AAC76294.2| DNA adenine methyltransferase, SAM-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|169890625|gb|ACB04332.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
DH10B]
gi|238862670|gb|ACR64668.1| predicted methyltransferase [Escherichia coli BW2952]
gi|260447711|gb|ACX38133.1| DNA methylase N-4/N-6 domain protein [Escherichia coli DH1]
gi|299878636|gb|EFI86847.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
gi|300452137|gb|EFK15757.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
gi|301074788|gb|EFK89594.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
gi|309703681|emb|CBJ03022.1| putative DNA methylase [Escherichia coli ETEC H10407]
gi|315137845|dbj|BAJ45004.1| putative methyltransferase [Escherichia coli DH1]
gi|315617071|gb|EFU97681.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
3431]
gi|323936255|gb|EGB32547.1| DNA methylase [Escherichia coli E1520]
Length = 294
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|157162743|ref|YP_001460061.1| putative methyltransferase [Escherichia coli HS]
gi|157068423|gb|ABV07678.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli HS]
Length = 294
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278
>gi|293449585|ref|ZP_06664006.1| adenine-specific DNA-methyltransferase [Escherichia coli B088]
gi|291322675|gb|EFE62104.1| adenine-specific DNA-methyltransferase [Escherichia coli B088]
Length = 296
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|331679335|ref|ZP_08380007.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
gi|332279906|ref|ZP_08392319.1| conserved hypothetical protein [Shigella sp. D9]
gi|331073400|gb|EGI44723.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
gi|332102258|gb|EGJ05604.1| conserved hypothetical protein [Shigella sp. D9]
Length = 296
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|73857268|gb|AAZ89975.1| putative methyltransferase [Shigella sonnei Ss046]
Length = 296
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ ++ C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIVECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|191169151|ref|ZP_03030909.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
B7A]
gi|209920734|ref|YP_002294818.1| putative methyltransferase [Escherichia coli SE11]
gi|256018824|ref|ZP_05432689.1| putative methyltransferase [Shigella sp. D9]
gi|260846067|ref|YP_003223845.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|260857389|ref|YP_003231280.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|260870013|ref|YP_003236415.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|300824974|ref|ZP_07105073.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
gi|307314981|ref|ZP_07594569.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
gi|309793841|ref|ZP_07688267.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
gi|331670086|ref|ZP_08370931.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
gi|190900793|gb|EDV60584.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
B7A]
gi|209913993|dbj|BAG79067.1| putative methyltransferase [Escherichia coli SE11]
gi|257756038|dbj|BAI27540.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|257761214|dbj|BAI32711.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|257766369|dbj|BAI37864.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
gi|300522540|gb|EFK43609.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
gi|306905564|gb|EFN36096.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
gi|308122798|gb|EFO60060.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
gi|315062561|gb|ADT76888.1| predicted methyltransferase [Escherichia coli W]
gi|320181533|gb|EFW56451.1| Adenine-specific methyltransferase [Shigella boydii ATCC 9905]
gi|323154481|gb|EFZ40682.1| hypothetical protein ECEPECA14_3785 [Escherichia coli EPECa14]
gi|323183021|gb|EFZ68420.1| hypothetical protein ECOK1357_3629 [Escherichia coli 1357]
gi|323376852|gb|ADX49120.1| DNA methylase N-4/N-6 domain protein [Escherichia coli KO11]
gi|324020744|gb|EGB89963.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
gi|324119442|gb|EGC13325.1| DNA methylase [Escherichia coli E1167]
gi|331062999|gb|EGI34913.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
Length = 294
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|170018495|ref|YP_001723449.1| putative methyltransferase [Escherichia coli ATCC 8739]
gi|188492784|ref|ZP_03000054.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
53638]
gi|194440031|ref|ZP_03072088.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
101-1]
gi|253771908|ref|YP_003034739.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254163197|ref|YP_003046305.1| putative methyltransferase [Escherichia coli B str. REL606]
gi|300904456|ref|ZP_07122302.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
gi|300928703|ref|ZP_07144221.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
gi|301304271|ref|ZP_07210385.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
gi|312972469|ref|ZP_07786643.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
1827-70]
gi|169753423|gb|ACA76122.1| DNA methylase N-4/N-6 domain protein [Escherichia coli ATCC 8739]
gi|188487983|gb|EDU63086.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
53638]
gi|194421035|gb|EDX37065.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
101-1]
gi|242378796|emb|CAQ33588.1| DNA adenine methyltransferase [Escherichia coli BL21(DE3)]
gi|253322952|gb|ACT27554.1| DNA methylase N-4/N-6 domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975098|gb|ACT40769.1| predicted methyltransferase [Escherichia coli B str. REL606]
gi|253979254|gb|ACT44924.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
gi|300403618|gb|EFJ87156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
gi|300463292|gb|EFK26785.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
gi|300840397|gb|EFK68157.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
gi|310334846|gb|EFQ01051.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
1827-70]
gi|315257188|gb|EFU37156.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
gi|323941645|gb|EGB37824.1| DNA methylase [Escherichia coli E482]
gi|323961090|gb|EGB56704.1| DNA methylase [Escherichia coli H489]
gi|323970323|gb|EGB65593.1| DNA methylase [Escherichia coli TA007]
gi|332345217|gb|AEE58551.1| adenine-specific methylase YhdJ [Escherichia coli UMNK88]
Length = 294
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278
>gi|161986434|ref|YP_312210.2| putative methyltransferase [Shigella sonnei Ss046]
gi|323165223|gb|EFZ51013.1| hypothetical protein SS53G_4688 [Shigella sonnei 53G]
Length = 294
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ ++ C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIVECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|38704155|ref|NP_312161.2| methyltransferase [Escherichia coli O157:H7 str. Sakai]
gi|161367510|ref|NP_289830.2| putative methyltransferase [Escherichia coli O157:H7 EDL933]
gi|168752562|ref|ZP_02777584.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4113]
gi|168764877|ref|ZP_02789884.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4501]
gi|168769125|ref|ZP_02794132.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4486]
gi|168777678|ref|ZP_02802685.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4196]
gi|168783831|ref|ZP_02808838.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4076]
gi|168786155|ref|ZP_02811162.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC869]
gi|168802604|ref|ZP_02827611.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC508]
gi|195940006|ref|ZP_03085388.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
gi|208807568|ref|ZP_03249905.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4206]
gi|208812864|ref|ZP_03254193.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4045]
gi|208819259|ref|ZP_03259579.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4042]
gi|209400072|ref|YP_002272724.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4115]
gi|217327970|ref|ZP_03444053.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. TW14588]
gi|254795205|ref|YP_003080042.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
gi|261228267|ref|ZP_05942548.1| predicted methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255123|ref|ZP_05947656.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK966]
gi|291284629|ref|YP_003501447.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O55:H7 str. CB9615]
gi|187767137|gb|EDU30981.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4196]
gi|188013624|gb|EDU51746.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4113]
gi|188998858|gb|EDU67844.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4076]
gi|189361843|gb|EDU80262.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4486]
gi|189365192|gb|EDU83608.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4501]
gi|189373855|gb|EDU92271.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC869]
gi|189375426|gb|EDU93842.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC508]
gi|208727369|gb|EDZ76970.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4206]
gi|208734141|gb|EDZ82828.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4045]
gi|208739382|gb|EDZ87064.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4042]
gi|209161472|gb|ACI38905.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. EC4115]
gi|217320337|gb|EEC28762.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O157:H7 str. TW14588]
gi|254594605|gb|ACT73966.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
gi|290764502|gb|ADD58463.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
O55:H7 str. CB9615]
gi|320189609|gb|EFW64268.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
EC1212]
gi|320645624|gb|EFX14633.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
gi|320650934|gb|EFX19391.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
gi|320656315|gb|EFX24227.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320662005|gb|EFX29413.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
gi|326337957|gb|EGD61791.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
1125]
gi|326347526|gb|EGD71251.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
1044]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|12517892|gb|AAG58390.1|AE005554_1 putative methyltransferase [Escherichia coli O157:H7 str. EDL933]
gi|13363607|dbj|BAB37557.1| putative methyltransferase [Escherichia coli O157:H7 str. Sakai]
gi|209757518|gb|ACI77071.1| putative methyltransferase [Escherichia coli]
gi|209757520|gb|ACI77072.1| putative methyltransferase [Escherichia coli]
gi|209757522|gb|ACI77073.1| putative methyltransferase [Escherichia coli]
gi|209757526|gb|ACI77075.1| putative methyltransferase [Escherichia coli]
Length = 296
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|323966440|gb|EGB61874.1| DNA methylase [Escherichia coli M863]
gi|327251356|gb|EGE63045.1| hypothetical protein ECSTEC7V_3896 [Escherichia coli STEC_7v]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVTSHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|193071526|ref|ZP_03052436.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
E110019]
gi|192955163|gb|EDV85656.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
E110019]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278
>gi|218702035|ref|YP_002409664.1| putative methyltransferase [Escherichia coli IAI39]
gi|300937389|ref|ZP_07152224.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
gi|218372021|emb|CAR19877.1| methyltransferase [Escherichia coli IAI39]
gi|300457563|gb|EFK21056.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
gi|323189126|gb|EFZ74410.1| hypothetical protein ECRN5871_2725 [Escherichia coli RN587/1]
gi|323979019|gb|EGB74097.1| DNA methylase [Escherichia coli TW10509]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|331674779|ref|ZP_08375538.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
gi|331068218|gb|EGI39614.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
Length = 296
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|218696961|ref|YP_002404628.1| putative methyltransferase [Escherichia coli 55989]
gi|218353693|emb|CAU99950.1| methyltransferase [Escherichia coli 55989]
gi|320202171|gb|EFW76746.1| Adenine-specific methyltransferase [Escherichia coli EC4100B]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278
>gi|187732784|ref|YP_001881954.1| putative methyltransferase [Shigella boydii CDC 3083-94]
gi|187429776|gb|ACD09050.1| DNA methylase, N4/N6-methyltransferase family [Shigella boydii CDC
3083-94]
gi|320177101|gb|EFW52117.1| Adenine-specific methyltransferase [Shigella dysenteriae CDC
74-1112]
gi|320184070|gb|EFW58890.1| Adenine-specific methyltransferase [Shigella flexneri CDC 796-83]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + ++ ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYDPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|331684902|ref|ZP_08385494.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
gi|331078517|gb|EGI49723.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|300925993|ref|ZP_07141816.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
gi|301326296|ref|ZP_07219669.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
gi|300417937|gb|EFK01248.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
gi|300846997|gb|EFK74757.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 86/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278
>gi|332098818|gb|EGJ03775.1| hypothetical protein SB359474_0136 [Shigella boydii 3594-74]
Length = 283
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 33/279 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + ++ ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYDPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
FIGIE+ +YI + +R+ EL + +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERPA 276
>gi|293416687|ref|ZP_06659326.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
gi|331654860|ref|ZP_08355860.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
gi|291432043|gb|EFF05026.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
gi|331048242|gb|EGI20319.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
Length = 296
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|215488569|ref|YP_002331000.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
gi|312968407|ref|ZP_07782616.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
2362-75]
gi|215266641|emb|CAS11080.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|312286625|gb|EFR14536.1| uncharacterized adenine-specific methylase yhdJ [Escherichia coli
2362-75]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|168262589|ref|ZP_02684562.1| DNA methylase [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|205348404|gb|EDZ35035.1| DNA methylase [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 33/280 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----TSF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +PK+ YTFN DA+ + + G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
FIGIE+ +Y+ + +R++ EL + ++T+
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 277
>gi|300958256|ref|ZP_07170403.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
gi|300315074|gb|EFJ64858.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
Length = 294
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRMRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|324115134|gb|EGC09098.1| DNA methylase [Escherichia fergusonii B253]
Length = 292
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 34/295 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+++S L+KLP++SVDLIFADPPYN+ N D + +SWD +
Sbjct: 16 RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ + C RVLK G+++++ S N+ I L+ + + + +
Sbjct: 62 RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWID--LECRKLFTIKSRIIWAYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ F + +E ++ K YTFN DA N S +
Sbjct: 120 KKYFGSMYEPILMMVKDAK--NYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA + R
Sbjct: 178 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGEVAVETGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
FIGIE+ +Y+ + +R+ EL + KR + RG + P
Sbjct: 238 RFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVK-KRKTRNQSKKSQNSRGSLLP 291
>gi|332087253|gb|EGI92386.1| hypothetical protein SB521682_3384 [Shigella boydii 5216-82]
Length = 294
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIESNSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|313202777|ref|YP_004041434.1| DNA methylase N-4/N-6 domain protein [Paludibacter propionicigenes
WB4]
gi|312442093|gb|ADQ78449.1| DNA methylase N-4/N-6 domain protein [Paludibacter propionicigenes
WB4]
Length = 235
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 17/249 (6%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I + + L++LP + VDLIF DPPY + + +D F S +
Sbjct: 3 LNIIYNQSCLDGLKQLPDECVDLIFTDPPYYQHRAQNVQGLKNHKDVVTEFDFDGFKSED 62
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP- 138
Y F L+ C RV KP + ++ + I M++ F I W K+NP P
Sbjct: 63 EYLQFLEDVLMECFRVCKPGASGYLWCGDDFVSFINRMVERTGFQFRKVIHWHKTNPFPA 122
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+ + + N+ E L+ S T+N+ + M + PIC G ER +
Sbjct: 123 MYTRKMYANSMELLVHFSK---GSPKTWNHKPVN------DMHNFIQAPICMGKERTK-- 171
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
H TQKP + + S+ GD++LDPF GSG++ AKKL+R+FIG E+ +Y
Sbjct: 172 -----HKTQKPLKVCMPFIEISSNEGDLVLDPFMGSGSTAVAAKKLKRNFIGYELSTEYC 226
Query: 259 DIATKRIAS 267
+IA R+
Sbjct: 227 NIANSRLEK 235
>gi|56962596|ref|YP_174322.1| adenine-specific DNA methylase [Bacillus clausii KSM-K16]
gi|56908834|dbj|BAD63361.1| adenine-specific DNA methylase [Bacillus clausii KSM-K16]
Length = 403
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 30/287 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+ + L+K+P +SVDLI+ DPP+ Q +L D+ DSW S + Y
Sbjct: 3 IFLGDCLEQLKKIPDESVDLIYLDPPFYTQKTQKLKTRDNQKEYYFEDSW---ESIQEYF 59
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F + L C RVLK G++++ + L + + +
Sbjct: 60 NFIKVRLEECHRVLKKTGSIFLHCDKSASHYLRVALDEVFGMDKFQSEIIWAYKRWSNSK 119
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------- 177
N H+T+ + S + K K D N D
Sbjct: 120 VGLLNNHQTIYFYSKTKKFKFNKIYTDYSATTNIDQILQERVRDENAKSVYKVDENGKPI 179
Query: 178 --VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ + L + + +PTQKP L+ +IL T GD +LDPF GSG
Sbjct: 180 IGKEKKGVPLSDVWNIPFLNPKAKERTGYPTQKPILLIEQILKLVTDEGDKVLDPFCGSG 239
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
T+ A + R +IGI++ +D I + +R+ + + L +
Sbjct: 240 TTLVTANIMNRKYIGIDISEDAIQLTKQRLENPIKTSSHLLNKGEKE 286
>gi|293412630|ref|ZP_06655353.1| adenine-specific methylase yhdJ [Escherichia coli B354]
gi|291469401|gb|EFF11892.1| adenine-specific methylase yhdJ [Escherichia coli B354]
Length = 296
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 280
>gi|218706876|ref|YP_002414395.1| putative methyltransferase [Escherichia coli UMN026]
gi|293406864|ref|ZP_06650790.1| methyltransferase [Escherichia coli FVEC1412]
gi|298382605|ref|ZP_06992202.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
gi|300898034|ref|ZP_07116405.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
gi|218433973|emb|CAR14890.1| methyltransferase [Escherichia coli UMN026]
gi|291426870|gb|EFE99902.1| methyltransferase [Escherichia coli FVEC1412]
gi|298277745|gb|EFI19261.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
gi|300358253|gb|EFJ74123.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
Length = 294
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 88/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+KLPA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKLPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI++ S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILGSSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|331664871|ref|ZP_08365776.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
gi|284923276|emb|CBG36370.1| putative DNA methylase [Escherichia coli 042]
gi|331058119|gb|EGI30101.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
Length = 285
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVTSHYSAEELAKVKKRKTGNR 278
>gi|323162947|gb|EFZ48782.1| hypothetical protein ECE128010_0909 [Escherichia coli E128010]
Length = 294
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPE LL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEVLLKRIILASSNPGDIVLDPFAGSFTTGAVAVSCGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|161984845|ref|YP_409580.2| methyltransferase [Shigella boydii Sb227]
Length = 294
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + ++ ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYDPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|81247044|gb|ABB67752.1| putative methyltransferase [Shigella boydii Sb227]
Length = 296
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + ++ ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYDPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDIILDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIILDPFAGSFTTGAVAVSSGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|218550546|ref|YP_002384337.1| methyltransferase [Escherichia fergusonii ATCC 35469]
gi|218358087|emb|CAQ90733.1| methyltransferase [Escherichia fergusonii ATCC 35469]
Length = 299
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 34/295 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+++S L+KLP++SVDLIFADPPYN+ N D + +SWD +
Sbjct: 23 RIIHGDALSELKKLPSESVDLIFADPPYNIGKN----------FDGLVESWDD----ADF 68
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ + C RVLK G+++++ S N+ I L+ + + + +
Sbjct: 69 RSWLFEIIAECHRVLKKQGSMYIMNSTENMPWID--LECRKLFTIKSRIIWAYDSSGVQA 126
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ F + +E ++ K YTFN DA N S +
Sbjct: 127 KKYFGSMYEPILMMVKDAK--NYTFNSDAILVEAKTGAKRALIDYRKNPPQPYNSQKVPG 184
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP ALL RI+++S+ PGDI+LDPF GS T+G VA + R
Sbjct: 185 NVWEFSRVRYLMDEYENHPTQKPVALLKRIILASSCPGDIVLDPFAGSFTTGEVAVETGR 244
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
FIGIE+ +Y+ + +R+ EL + KR + RG + P
Sbjct: 245 RFIGIEVNCEYVKMGLRRLNVDSHFSAEELAKVK-KRKTRNQSKKSQNSRGSLLP 298
>gi|308177941|ref|YP_003917347.1| site-specific DNA-methyltransferase [Arthrobacter arilaitensis
Re117]
gi|307745404|emb|CBT76376.1| site-specific DNA-methyltransferase [Arthrobacter arilaitensis
Re117]
Length = 308
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 26/269 (9%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK------ 74
+ + G+++S+L LP +S LI+ DPP+N R ++V A D+
Sbjct: 28 NTVYHGDNLSILGSLPDQSFTLIYVDPPFNTGRK--QTRAQRTMVRAAEGEGDRTGFKGR 85
Query: 75 ------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+F+ Y +F L R+L +GTL+V Y + + +L +
Sbjct: 86 EYNTELGIARSYHDTFDDYLSFIEPRLREAHRLLAEDGTLYVHLDYREVHYVKVLLDQIF 145
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANE 176
+ R+ H+T++ PK + Y A
Sbjct: 146 GRDCFLNELIWAYDYGARAKSRWPAKHDTILVYVKDPKQYHFDSAEVDREPYMAPGLVTP 205
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + + + +PTQKPE +L RI+ +S++PGD++LD F GSGT
Sbjct: 206 EKRALGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIVAASSRPGDLVLDFFAGSGT 265
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+GAVA KL R F+ I+ + I++ R+
Sbjct: 266 TGAVAAKLGRQFVLIDQNPEAIEVMKARL 294
>gi|257461260|ref|ZP_05626357.1| DNA methylase [Campylobacter gracilis RM3268]
gi|257441288|gb|EEV16434.1| DNA methylase [Campylobacter gracilis RM3268]
Length = 271
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ KG+ ++L K + DLIFADPPY L +G L + +V WDK +
Sbjct: 9 KLFKGDCFNILPKFKGE-FDLIFADPPYFLSNDG-LSIQNGQIVSVNKGEWDKSYGIDEI 66
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F WL + L NG++ + G+YHNIF IG LQ L++ ILN I W K+NP PNF
Sbjct: 67 DKFNLEWLALAKDALANNGSVMISGTYHNIFSIGRALQKLDYKILNVITWAKTNPPPNFS 126
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R + E +IWA S K + FNY+ +K N + QMR W +P + E+ K
Sbjct: 127 CRYLTHGSEQIIWARKSEK-FKHIFNYELMKKLNGNKQMRDVWSLPAIAPWEKACGK--- 182
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP LL R+++ ++ ++ DPF GS T+G A L R F+GIE + ++IDIA
Sbjct: 183 --HPTQKPLPLLVRLILMASTQNSVVCDPFAGSATTGVAANLLGRKFVGIEKEDEFIDIA 240
Query: 262 TKR 264
KR
Sbjct: 241 VKR 243
>gi|194430238|ref|ZP_03062735.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
B171]
gi|194411709|gb|EDX28034.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
B171]
Length = 294
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPE LL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEVLLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|163845918|ref|YP_001633962.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222523640|ref|YP_002568110.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163667207|gb|ABY33573.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222447519|gb|ACM51785.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
Length = 400
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 71/286 (24%), Positives = 120/286 (41%), Gaps = 30/286 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ VL+ + S+DL++ DPP+ Q L D + + D+W S E Y
Sbjct: 2 TVLCGDCRIVLQSINDSSIDLVYMDPPFFTQKTHALVNRDGNASYSFEDTW---ESIETY 58
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
AF R L+ C+RVLK G+++V + +L + + +
Sbjct: 59 LAFMREVLIQCKRVLKDTGSIFVHCDRSASHHLRVLLDQIFGPEHFQSEIIWTYRRWSNS 118
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS-------------DWLIPI 188
+ AH+T+ + S + K D N D +++ D I
Sbjct: 119 KKGLLPAHQTIYFYSKTENFKFNVLFTDYSPTTNIDQILQARARNEKGKSVYRRDQHGNI 178
Query: 189 CSGSERL--------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+G E+ +PTQKP LL RI+ +T GD +LDPF GS
Sbjct: 179 VAGKEKKGVPLSDVWYIPFLNPKAKERVGYPTQKPVLLLERIIKIATDSGDSVLDPFCGS 238
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
GT+ AK L R++IGI++ ++ + ++ +R+ + L V
Sbjct: 239 GTTLVAAKLLGRTYIGIDISREAVSLSEERLRQPIKSESQLLVVGE 284
>gi|193066458|ref|ZP_03047503.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
E22]
gi|192925887|gb|EDV80536.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
E22]
Length = 294
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSTPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|170680849|ref|YP_001745533.1| putative methyltransferase [Escherichia coli SMS-3-5]
gi|170518567|gb|ACB16745.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
SMS-3-5]
Length = 294
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G++++ L+K+PA SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALTELKKIPADSVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|329914377|ref|ZP_08276110.1| putative DNA-methyltransferase (DNA-modification methylase)
[Oxalobacteraceae bacterium IMCC9480]
gi|327545139|gb|EGF30424.1| putative DNA-methyltransferase (DNA-modification methylase)
[Oxalobacteraceae bacterium IMCC9480]
Length = 258
Score = 169 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 71/267 (26%), Positives = 130/267 (48%), Gaps = 33/267 (12%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +W++++ ++++ L ++P +DLI ADPPY L + + DK
Sbjct: 1 MADWQNQVFCEDALAGLARIPDGVIDLILADPPYGLGKDYG-------------NDSDKL 47
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
++ Y A+ W+ A LKPNG+L++ ++ I +L+ ++N+IVW +
Sbjct: 48 AT-AEYLAWMERWIDAALPKLKPNGSLYIFLTWRYSPEIFVLLKQRMT-MVNEIVWDRRV 105
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--------------VQMR 181
P R++ + H+T+ + + +K Y F+ DA++ + +
Sbjct: 106 PSMGGTVRKYSSVHDTIGFFA---NSKDYYFDLDAIRIPYDAVTKKARSRSIFVGAKWLE 162
Query: 182 SDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ RL + E+ HPTQKP ++ R++ +S PG I+LDPF GSGT+
Sbjct: 163 LGYNPKDVWSVSRLHREHRERADHPTQKPLEIIERMVKASCPPGGIVLDPFMGSGTTAVA 222
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
AK+ R F+G E+ DY + +R+A
Sbjct: 223 AKRAGRQFVGFELNADYCAMIAQRLAQ 249
>gi|160884890|ref|ZP_02065893.1| hypothetical protein BACOVA_02880 [Bacteroides ovatus ATCC 8483]
gi|237716944|ref|ZP_04547425.1| type II restriction enzyme M protein [Bacteroides sp. D1]
gi|262405713|ref|ZP_06082263.1| DNA methylase [Bacteroides sp. 2_1_22]
gi|294643396|ref|ZP_06721215.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
gi|294810621|ref|ZP_06769271.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
CC 1b]
gi|156109925|gb|EDO11670.1| hypothetical protein BACOVA_02880 [Bacteroides ovatus ATCC 8483]
gi|229442927|gb|EEO48718.1| type II restriction enzyme M protein [Bacteroides sp. D1]
gi|262356588|gb|EEZ05678.1| DNA methylase [Bacteroides sp. 2_1_22]
gi|292641274|gb|EFF59473.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
gi|294442163|gb|EFG10980.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
CC 1b]
gi|295085863|emb|CBK67386.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
Length = 279
Score = 169 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 95/243 (39%), Positives = 136/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ +L + D+IFADPPY L G + +V WD+ E+
Sbjct: 15 TLLLGDCRQLLSQF-DFQFDMIFADPPYFLSNGG-ISVQSGKIVCVDKGDWDRSFGKESI 72
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ CR LK NGT+W+ G+YHNIF + L L F ILN I W K+NP PN
Sbjct: 73 DNFNYKWIADCRDKLKDNGTIWISGTYHNIFSVANQLTELGFKILNCITWVKTNPPPNIS 132
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F + E +IWA + Y +NYD +K +N + QM W + G E++ K
Sbjct: 133 CRYFTYSAEYIIWARKNNNVSHY-YNYDFMKMSNANHQMTDVWNLSAIEGWEKIHGK--- 188
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP LL+R++ +ST+PG ILDPF GS T+G A L+R F+GI+++Q Y++++
Sbjct: 189 --HPTQKPINLLARVIAASTRPGAWILDPFAGSSTTGVTANLLKRRFLGIDIEQKYLELS 246
Query: 262 TKR 264
R
Sbjct: 247 ILR 249
>gi|149923216|ref|ZP_01911628.1| putative DNA methylase [Plesiocystis pacifica SIR-1]
gi|149815932|gb|EDM75449.1| putative DNA methylase [Plesiocystis pacifica SIR-1]
Length = 324
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 67/295 (22%), Positives = 107/295 (36%), Gaps = 38/295 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVT----- 69
I +GN++ +L P S DLI+ DPP+N R D
Sbjct: 36 IFEGNNLELLAAQPDGSFDLIYIDPPFNTGRRQSRTRTRMVGDAEGDRRGFGGKRYRTIK 95
Query: 70 -DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ SF+ + F L+ R+L P G+ ++ Y +L ++
Sbjct: 96 VGTRSFSDSFDDFLEFLEPRLVEAHRLLAPTGSFFLHIDYREAHYCKVLLDDIFGRASFM 155
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------- 175
+ +R+ + H+T+ W + PK YTF ++A+
Sbjct: 156 NELIWAYDYGARSKKRWSSKHDTIFWYARDPK--NYTFEFEAMDRIPYMAPGLVSAEKAA 213
Query: 176 EDVQMRSDWLIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
W I G ER +PTQKP +L RI+ ++PGD +LD F G
Sbjct: 214 RGKTPTDVWWHTIVPTKGKER-------TGYPTQKPLGILERIVKVHSRPGDRVLDFFAG 266
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
SGT+G KL R+ I+ + I + +R+ P P
Sbjct: 267 SGTTGEACAKLGRNCTLIDANPEAIAVMRRRLEFANPRIVEAERPSEQAIAAPDD 321
>gi|205354287|ref|YP_002228088.1| methyltransferase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205274068|emb|CAR39074.1| putative adenine-specific DNA-modification methylase [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|326629410|gb|EGE35753.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 294
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 33/280 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +PK+ YTFN DA+ + + G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGC 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
FIGIE+ +Y+ + +R++ EL + ++T+
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQN 277
>gi|323946891|gb|EGB42907.1| DNA methylase [Escherichia coli H120]
Length = 294
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ P DI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPSDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|254038426|ref|ZP_04872484.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|226840050|gb|EEH72071.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
Length = 294
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ P DI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPADIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|266582|sp|P29538|MTH1_HAEPA RecName: Full=Modification methylase HpaI; Short=M.HpaI; AltName:
Full=Adenine-specific methyltransferase HpaI
gi|216715|dbj|BAA01519.1| HpaI methyltransferase [Haemophilus parainfluenzae]
Length = 314
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 81/308 (26%), Positives = 131/308 (42%), Gaps = 31/308 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I N+I L+ L S+DLI DPPYNL + D +F Y
Sbjct: 4 RLICSNAIKALKNLEENSIDLIITDPPYNLGKDYGTT--------------DDNLNFNKY 49
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F+ WL C RVLKP+GT+++ I I +L+ N + +
Sbjct: 50 LEFSHEWLEECYRVLKPHGTIYIFMGMKYISYIYKILEQDLGMYFNSWITWYYTQGIG-K 108
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN---- 197
R + H+ ++ + PK +TFN D ++ + + ++ S +
Sbjct: 109 TRGYSPRHDDILMFTKHPK--KFTFNLDRIRVPQKYYRSVNNMRGANPSNVWEFSHVHYC 166
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K HPTQKPEAL R++++S+ GDI+LDPF GSGT V K L RS IGI++ ++Y
Sbjct: 167 NKNRKPHPTQKPEALYERMILASSNEGDIVLDPFVGSGTLNFVCKHLNRSGIGIDINKEY 226
Query: 258 IDIATKR----------IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
I++A +R I +L+ ++ N ++ + L
Sbjct: 227 IEMAKERLDSEFNGFDSIDERMKRCPNDLSDPVIRKQYIINHINWFLKNHENAREEFLNE 286
Query: 308 AQGNISAT 315
+
Sbjct: 287 VKTKYYKK 294
>gi|209757524|gb|ACI77074.1| putative methyltransferase [Escherichia coli]
Length = 296
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 88/289 (30%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II GN+++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 18 TIIHGNALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 64 IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 121
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 122 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 179
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 180 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 240 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 288
>gi|213028799|ref|ZP_03343246.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 279
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 84/271 (30%), Positives = 138/271 (50%), Gaps = 33/271 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +PK+ YTFN DA+ + + G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
FIGIE+ +Y+ + +R++ EL
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENELD 268
>gi|282878857|ref|ZP_06287624.1| DNA (cytosine-5-)-methyltransferase [Prevotella buccalis ATCC
35310]
gi|281299065|gb|EFA91467.1| DNA (cytosine-5-)-methyltransferase [Prevotella buccalis ATCC
35310]
Length = 295
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 99/252 (39%), Positives = 140/252 (55%), Gaps = 10/252 (3%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
++S ++ +I+G+ + L K D++FADPPY L G + +V W
Sbjct: 10 KSSSKDF--TLIQGDCVETLSKFKFG-FDMVFADPPYFLS-GGGISYQSGKVVCVDKGDW 65
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
DK + E DAF WL A R +K N T+W+ G++HNIF + L L F ILN I W
Sbjct: 66 DKPVTSEELDAFNLRWLTAVREHMKDNATIWISGTHHNIFSVQQQLLKLGFKILNIITWA 125
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K+NP PN R F + E +IWA SPK Y FNY +K N D QM W +P
Sbjct: 126 KTNPPPNISCRYFTFSTEFIIWARKSPKVPHY-FNYALMKKLNGDKQMTDVWQLPSIGKW 184
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
E+ K HPTQKP +L+RI+ +S++P ILDPF GSGT+G A L R+++G+E
Sbjct: 185 EKSCGK-----HPTQKPLGVLARIIQASSEPNSWILDPFSGSGTTGIAANLLGRNYLGLE 239
Query: 253 MKQDYIDIATKR 264
+D++ ++ KR
Sbjct: 240 KDKDFLLMSKKR 251
>gi|300917417|ref|ZP_07134082.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
gi|300415327|gb|EFJ98637.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
Length = 294
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 85/281 (30%), Positives = 133/281 (47%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HP QKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPKQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278
>gi|213580282|ref|ZP_03362108.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 267
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 84/270 (31%), Positives = 138/270 (51%), Gaps = 33/270 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +PK+ YTFN DA+ + + G
Sbjct: 120 KKYFGSMYEPILMMVKNPKS--YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
FIGIE+ +Y+ + +R++ EL
Sbjct: 238 KFIGIELNNEYVKMGLRRLSVTSHYSENEL 267
>gi|157157471|ref|YP_001464736.1| putative methyltransferase [Escherichia coli E24377A]
gi|157079501|gb|ABV19209.1| DNA methylase, N4/N6-methyltransferase family [Escherichia coli
E24377A]
Length = 294
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPT+KPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTRKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 278
>gi|148654309|ref|YP_001274514.1| adenine-specific DNA-methyltransferase [Roseiflexus sp. RS-1]
gi|148566419|gb|ABQ88564.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
sp. RS-1]
Length = 303
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 69/286 (24%), Positives = 118/286 (41%), Gaps = 20/286 (6%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSS- 77
KI ++I VL LP++SVDLI+ DPP+N QL D V ++ S
Sbjct: 14 KIYLADNIDVLRTLPSESVDLIYIDPPFNTGKVQERTQLKTVRSESGDRVGFQGHRYESI 73
Query: 78 ----------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
F+ Y AF L+ R+L P+G L+V Y + +L +
Sbjct: 74 VVGKKRFADLFDDYLAFLEPRLVEAHRILAPHGCLYVHLDYREVHYCKVLLDAIFDRACF 133
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQMR 181
+ R+ H+T++ + P + Y A + R
Sbjct: 134 LNEIIWAYDYGGRPRDRWPPKHDTILLYAKVPGQHVFNLDAIERIPYMAPGLVGPEKAAR 193
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ N + +PTQKP +L RI+ +S+ PG ++LD F GSGT+G A
Sbjct: 194 GKLPTDTWWHTIVPTNGSEKTGYPTQKPLGILRRIIQASSHPGAVVLDFFAGSGTTGIAA 253
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
+L R FI ++ Q+ + + +R ++ + + + ++ E +
Sbjct: 254 LELGRRFILVDNSQEALQVMARRFDGIRGITWVGFDPMPYQKGEKQ 299
>gi|157148841|ref|YP_001456160.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
gi|157086046|gb|ABV15724.1| hypothetical protein CKO_04674 [Citrobacter koseri ATCC BAA-895]
Length = 294
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 87/289 (30%), Positives = 139/289 (48%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G+++S L+KLP +S DLIFADPPYN+ N D + +SWD+ E +
Sbjct: 16 KIIHGDALSELKKLPPESADLIFADPPYNIGKN----------FDGLVESWDE----ETF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ + L+ + + + +
Sbjct: 62 LAWLFECIDECHRVLKKHGTMYIMNSTENMPYLD--LKCRKLFDIKSRIIWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ F + +E ++ K YTFN D N + +
Sbjct: 120 KKYFGSMYEPILMMVKDAK--NYTFNRDDILVETKTGAKRALIDYRKNPPQPYNTQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP ALLSRI+++S+ PGD +LDPF GS T+GAVA + R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPRALLSRIILASSNPGDTVLDPFAGSFTTGAVAVETGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
F+GIE+ +Y+ + +R+ EL + ++T + + E
Sbjct: 238 KFVGIEINDEYVKMGIRRLNVTSHYAENELAKVKKRKTTNLSKKSRMTE 286
>gi|161506057|ref|YP_001573169.1| putative methyltransferase [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160867404|gb|ABX24027.1| hypothetical protein SARI_04244 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 294
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 85/281 (30%), Positives = 142/281 (50%), Gaps = 33/281 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIILGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C RVLK +GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLYECVDECYRVLKKHGTMYIMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ +K YTFN DA+ + + G
Sbjct: 120 KKYFGSMYEPILMMVK--DSKTYTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP ALL RI+++S+ GD +LDPF GS T+GAVA R
Sbjct: 178 NVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNLGDTVLDPFAGSFTTGAVAAASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
FIGIE+ +Y+ I +R++ +L + ++T+ R
Sbjct: 238 KFIGIEINNEYVKIGLRRLSVTSHYSENDLAKVKKRKTKNR 278
>gi|213963061|ref|ZP_03391320.1| DNA methylase [Capnocytophaga sputigena Capno]
gi|213954402|gb|EEB65725.1| DNA methylase [Capnocytophaga sputigena Capno]
Length = 265
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 91/250 (36%), Positives = 140/250 (56%), Gaps = 8/250 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G+++ +L + + D++FADPPY L G L + +V WDK +
Sbjct: 15 LLHGDTMELLPQF-HRKFDMVFADPPYFLSNGG-LTVNNGEIVSVNKGDWDKSKGIAFVN 72
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R V+K T+W+ G+ HNIF +G +L L F ILN I W K+NP PNF
Sbjct: 73 DFNRQWLTLVREVMKEEATIWISGTMHNIFSVGQILTELGFKILNIITWEKTNPPPNFSC 132
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ E ++WA K Y FNY+ +K N + QM+ W P + E+ K
Sbjct: 133 RYFTHSTEHIVWARKEEKTPHY-FNYELMKELNGNKQMKDVWRFPAIAPWEKSCGK---- 187
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP ++L+R++++ST+P ILDPF GS T+G A R F+GI+ +Q++++++
Sbjct: 188 -HPTQKPLSVLTRLILASTQPNTWILDPFTGSSTTGIAANLQGRKFVGIDKEQEFLELSK 246
Query: 263 KRIASVQPLG 272
R +Q
Sbjct: 247 NRKLEIQNPD 256
>gi|333014708|gb|EGK34054.1| hypothetical protein SFK227_3919 [Shigella flexneri K-227]
Length = 283
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 33/279 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDL+FADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
FIGIE+ +YI + +R+ EL + +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERPA 276
>gi|320666839|gb|EFX33818.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
Length = 294
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 86/289 (29%), Positives = 135/289 (46%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + PTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENLPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|332998382|gb|EGK17981.1| hypothetical protein SFVA6_4185 [Shigella flexneri VA-6]
Length = 294
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDL+FADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIYYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|317130947|ref|YP_004097229.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
cellulosilyticus DSM 2522]
gi|315475895|gb|ADU32498.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
cellulosilyticus DSM 2522]
Length = 254
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 10/251 (3%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I + N ++ +P +S+ L+ ADPPYN+ G + + WD
Sbjct: 10 LNRIYQRNCTEGMKMIPGESISLVIADPPYNIGKKGSFIEAKDKHHHTIREDWDNI-PLN 68
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
++ F W+ C RVLKP G+L GS+HNI I +++ + + +W KSNP P+
Sbjct: 69 EFEKFNNDWINECFRVLKPGGSLLAWGSHHNIHIIAQLMEQTGYDMKPFYIWEKSNPAPS 128
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ GR + E L+W + K +T+N D K+ N +++ + + E+ + +
Sbjct: 129 WSGRLPTTSTEYLLWGTK---GKNWTYNLDYAKSINNGKNIKNVFKTSLTPPKEKKKGR- 184
Query: 200 GEKLHPTQKP-EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
P QK E L ++ + GDIIL PF GSGT VAK R FI E K +YI
Sbjct: 185 ----FPCQKRIEGLTDHLVKLHSLKGDIILVPFCGSGTECVVAKMYGRDFISFETKPEYI 240
Query: 259 DIATKRIASVQ 269
+A R+ +
Sbjct: 241 VLANNRLDDIC 251
>gi|206889902|ref|YP_002248225.1| modification methylase BamHI [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741840|gb|ACI20897.1| modification methylase BamHI [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 338
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 75/274 (27%), Positives = 124/274 (45%), Gaps = 30/274 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+N+N +KII G+ + ++ K+P SVD+ FADPP+NL+ Y +H
Sbjct: 2 QNKNFSKSLLNKIIFGDCLEIMRKIPDNSVDVTFADPPFNLKKKYNSYYDEH-------- 53
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
E Y ++ + WL R+ KP G+++V HNI + + I
Sbjct: 54 ------DVEIYLSWCKEWLYEMVRITKPTGSIFV----HNIPKWLIYFGSYLNEIAIFRH 103
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY------------DALKAANEDV 178
W + M + RG+ H +++ S K K Y +
Sbjct: 104 WIAWDAMGSPRGKTLLPNHYGILYYVKSDKFKFYDIRMLHKRCRKCKYILQDYGGKKAQM 163
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + + R+R++ HP Q P L+ R+L+ ++ GD+ILDPF G+GT+
Sbjct: 164 HQFGPLVSDVWTDIHRIRHRKRRDKHPCQLPVHLIERLLLMTSDEGDVILDPFVGTGTTA 223
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
AK+L R FIGI++ + YI+IA K++ Q
Sbjct: 224 IAAKRLGRRFIGIDIDEKYIEIAHKKLKETQVTM 257
>gi|332999339|gb|EGK18925.1| hypothetical protein SFK272_4070 [Shigella flexneri K-272]
Length = 294
Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDL+FADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|283788096|ref|YP_003367961.1| DNA methylase [Citrobacter rodentium ICC168]
gi|282951550|emb|CBG91249.1| putative DNA methylase [Citrobacter rodentium ICC168]
Length = 291
Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats.
Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 33/277 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
II G++++ L+KLPA+SVDLIFADPPYN+ + D + +SWD+ +
Sbjct: 17 IILGDALNELKKLPAESVDLIFADPPYNIGKD----------FDGMIESWDE----NVFL 62
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ A + C RVLK GT++++ S N+ I L+ + + + +
Sbjct: 63 TWLFACIDECHRVLKKQGTMYIMNSTENMPHID--LKCRGLFTIKSRIVWSYDSSGVQAK 120
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSGS 192
+ F + +E ++ K YTFN +++ + + G+
Sbjct: 121 KFFGSMYEPILMMVKDAK--HYTFNRESILVETKTGAKRALIDYRKNPPQPYNTQKVPGN 178
Query: 193 ----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R+R D + HPTQKP ALL RI+++S+ PGD +LDPF GS T+GAVA R
Sbjct: 179 VWEFPRVRYLMDEYENHPTQKPMALLQRIVLASSNPGDTVLDPFAGSFTTGAVAVAAGRK 238
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
FIGIE+ +Y+ + +R+ EL + ++T
Sbjct: 239 FIGIEINTEYVKMGLRRMRVSSHFTTDELAKVKKRKT 275
>gi|283836189|ref|ZP_06355930.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
29220]
gi|291067540|gb|EFE05649.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
29220]
Length = 294
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 33/290 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++SVDLIFADPPYN+ + D + + W++ E +
Sbjct: 16 KIILGDALTELKKLPSESVDLIFADPPYNIGKD----------FDGMVERWNE----ETF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C R+LKP+GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLFECIDECHRILKPHGTMYIMNSTENMPYID--LKCRQIFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
F + +E ++ K YTFN D N +
Sbjct: 120 KNYFGSMYEPILMMVKDQK--NYTFNRDDVLVEAKTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP+ALL RI+++S+ P D +LDPF GS T+GA A +L R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATAVELGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
F+GIE+ +Y+ + +R++ +EL + ++T+ + L
Sbjct: 238 QFVGIEINAEYVKMGLRRLSIGSHFSEVELAKVKKRKTKNLSKKSRLTAN 287
>gi|256820978|ref|YP_003142257.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
ochracea DSM 7271]
gi|256582561|gb|ACU93696.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
7271]
Length = 265
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 8/242 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G+++ +L + D++FADPPY L G L + +V WDK +
Sbjct: 15 LLHGDTMELLPQF-HHKFDMVFADPPYFLSNGG-LTVNNGEIVSVNKGDWDKSKGIVFVN 72
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R V+K + T+W+ G+ HNIF IG +L L F ILN I W K+NP PNF
Sbjct: 73 DFNRQWLTLVREVMKEDATIWISGTMHNIFSIGQILTELGFKILNIITWEKTNPPPNFSC 132
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ E +IWA K Y FNY +K N + QM+ W P + E+ K
Sbjct: 133 RYFTHSTEQIIWARKEEKTPHY-FNYKLMKELNGNKQMKDVWRFPAIAPWEKTCGK---- 187
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP ++L+R++++STKP ILDPF GS T+G A L R F+GI+ +QD+++++
Sbjct: 188 -HPTQKPLSVLTRLILASTKPNAWILDPFTGSSTTGIAANLLGRKFVGIDKEQDFLELSK 246
Query: 263 KR 264
R
Sbjct: 247 LR 248
>gi|81427756|ref|YP_394755.1| putative adenine-specifique DNA methyltransferase [Lactobacillus
sakei subsp. sakei 23K]
gi|78609397|emb|CAI54443.1| Putative adenine-specifique DNA methyltransferase [Lactobacillus
sakei subsp. sakei 23K]
Length = 261
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 94/248 (37%), Positives = 140/248 (56%), Gaps = 9/248 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I ++ +++ P+ SVD+I ADPPY L G +V WDK + +
Sbjct: 15 KLICSDTFECMQRFPSNSVDVIIADPPYFLSNGG-FSNSGGKMVSVNKGEWDKINDVKP- 72
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ F + + R+LK +GT+WV GS HNI+ +G +L F ILN+I W+KSNP PN
Sbjct: 73 EVFYTRLIRSADRILKKDGTIWVFGSMHNIYILGYLLPKYGFKILNNITWQKSNPAPNLS 132
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R F ++ ET+IWA ++ FNYD +K N QM+ W P + ER +
Sbjct: 133 KRMFTHSTETIIWAKK--ESGKQFFNYDLMKELNHSSQMKDVWTTPTINNYERRFGR--- 187
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP +++ R++ +ST G I+LDPF GSGT+ + IGI+ QDY++IA
Sbjct: 188 --HPTQKPLSVIDRMVKASTDSGMILLDPFVGSGTTAVAGARNGIRTIGIDNSQDYLNIA 245
Query: 262 TKRIASVQ 269
KR+++ Q
Sbjct: 246 IKRVSNFQ 253
>gi|332752465|gb|EGJ82854.1| hypothetical protein SFK671_3912 [Shigella flexneri K-671]
Length = 283
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 33/279 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++ + L+KLP +SVDL+FADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDAFAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
FIGIE+ +YI + +R+ EL + +R
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKERPA 276
>gi|315224178|ref|ZP_07866018.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga ochracea F0287]
gi|314945911|gb|EFS97920.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga ochracea F0287]
Length = 265
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 92/242 (38%), Positives = 137/242 (56%), Gaps = 8/242 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G+++ +L + + D++FADPPY L G L + +V WDK +
Sbjct: 15 LLHGDTMELLPQF-HRKFDMVFADPPYFLSNGG-LTVNNGEIVSVNKGDWDKSKGIAFVN 72
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R V+K T+W+ G+ HNIF IG +L L ILN I W K+NP PNF
Sbjct: 73 DFNRQWLTLVREVMKEEATIWISGTMHNIFSIGQILTELGLKILNIITWEKTNPPPNFSC 132
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ E +IWA K Y FNY+ +K N + QM+ W P + E+ K
Sbjct: 133 RYFTHSTEQIIWARKEEKTPHY-FNYELMKELNGNKQMKDVWRFPAIAPWEKSCGK---- 187
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP ++L+R++++STKP ILDPF GS T+G A R F+GI+ ++D+++++
Sbjct: 188 -HPTQKPLSVLTRLILASTKPDAWILDPFTGSSTTGIAANLQGRKFVGIDREKDFLELSK 246
Query: 263 KR 264
R
Sbjct: 247 LR 248
>gi|298346582|ref|YP_003719269.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
43063]
gi|298236643|gb|ADI67775.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
curtisii ATCC 43063]
Length = 432
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 55/261 (21%), Positives = 110/261 (42%), Gaps = 16/261 (6%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDS 71
+++I G ++ V+ L SVD I+ DPP+N + +R D V
Sbjct: 47 ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIQTHHRGDSKRTITVKQY 106
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D++ + Y L RR L P GT+++ +H+ + ++ +
Sbjct: 107 GDRWQT-ADYLQNLYERLTVLRRFLSPTGTIFLHCDWHSSATLRLIMDEVFGGRNLINEI 165
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWL 185
+ R F + H+T+++ + + + + + A+ ++ +
Sbjct: 166 VWAYASGGGSRRAFGHKHDTILFYARNRRRYYFDPDAVRVAYNAAIAPKRRELFNPQGMV 225
Query: 186 IPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
P R N + +PTQKP ++ R + ++ PG +++D F GSG++ A +L
Sbjct: 226 APDVWQISRPPNHSDTWVGYPTQKPLEVMQRAIAAACPPGGLVMDCFAGSGSTLVAAAQL 285
Query: 245 RRSFIGIEMKQDYIDIATKRI 265
R F+GIE + +A +R+
Sbjct: 286 GRRFLGIERNSLGVHLARRRL 306
>gi|154148672|ref|YP_001406783.1| DNA methylase [Campylobacter hominis ATCC BAA-381]
gi|153804681|gb|ABS51688.1| DNA methylase [Campylobacter hominis ATCC BAA-381]
Length = 271
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 98/272 (36%), Positives = 143/272 (52%), Gaps = 8/272 (2%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ K + G++ +L K + DLIFADPPY L +G L +V +WDK
Sbjct: 7 DDKKFTLYNGDTFEILPKFKS-KFDLIFADPPYFLSNDG-LSIQSGRIVSVNKGNWDKSY 64
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ D F WL + L NG++ + G+YHNIF IG LQ L+F ILN I W+K+NP
Sbjct: 65 GIDEIDKFNLEWLEMAKNALNDNGSVMISGTYHNIFSIGRALQKLDFKILNIITWQKTNP 124
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
PNF R ++ E +IWA S K + FNY+ +K N++ QM+ W P + E+
Sbjct: 125 PPNFSCRYLTHSTEQIIWARKSEK-HKHIFNYELMKKINDNKQMKDVWAFPAIAPWEKSC 183
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPTQKP LL R+++ ++ I DPF GS T+G A L R+FIGIE +++
Sbjct: 184 GK-----HPTQKPLRLLVRLILMASYENSTICDPFSGSSTTGIAANLLGRNFIGIEKEKE 238
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
+IDI+ R + N + + +
Sbjct: 239 FIDISLARKNELDQNRNKIFNKIDDFKIFKEL 270
>gi|269925476|ref|YP_003322099.1| Site-specific DNA-methyltransferase (adenine- specific)
[Thermobaculum terrenum ATCC BAA-798]
gi|269789136|gb|ACZ41277.1| Site-specific DNA-methyltransferase (adenine- specific)
[Thermobaculum terrenum ATCC BAA-798]
Length = 289
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 67/273 (24%), Positives = 107/273 (39%), Gaps = 24/273 (8%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--------GQLYRPDHSLVDAV 68
+KI G+++ VLE LP+ SV+LI+ DPP+N + + D
Sbjct: 1 MSSSNKIFFGDNLRVLESLPSNSVNLIYIDPPFNTGRRQVRISMSVDRDDQGDRKGFGGY 60
Query: 69 T------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y AF L RVL NG L+ Y + +L ++
Sbjct: 61 KYLTKVLGKLSFDDIYDDYLAFLEPRLREAHRVLTANGALYFHIDYREVHYCKILLDSIF 120
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------- 175
+ R++ H+ +++ Y FN D +
Sbjct: 121 GRDNFLNEIIWAYDYGGRSKRKWPTKHDNILYYVK--DRNNYVFNADEIDRLPYMAPSLV 178
Query: 176 -EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
D + + + +PTQKP A+L RI+ +S+ PGDI+LD F GS
Sbjct: 179 GGDKAKLGKLPTDVWWQTIVSPTGKEKTGYPTQKPLAILERIIRASSCPGDIVLDFFAGS 238
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+G A KL RSFI ++ ++ I + R
Sbjct: 239 GTTGVAAHKLGRSFILVDNNEEAIRVMRSRFRD 271
>gi|30064593|ref|NP_838764.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
gi|56480302|ref|NP_709057.2| putative methyltransferase [Shigella flexneri 2a str. 301]
gi|110807122|ref|YP_690642.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
gi|30042852|gb|AAP18575.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
gi|56383853|gb|AAN44764.2| putative methyltransferase [Shigella flexneri 2a str. 301]
gi|110616670|gb|ABF05337.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
gi|281602639|gb|ADA75623.1| putative methyltransferase [Shigella flexneri 2002017]
gi|313648496|gb|EFS12938.1| uncharacterized adenine-specific methylase yhdJ [Shigella flexneri
2a str. 2457T]
gi|332752424|gb|EGJ82814.1| hypothetical protein SF434370_3499 [Shigella flexneri 4343-70]
gi|332754622|gb|EGJ84988.1| hypothetical protein SF274771_3895 [Shigella flexneri 2747-71]
gi|332765261|gb|EGJ95488.1| methyltransferase DNA adenine methyltransferase [Shigella flexneri
2930-71]
gi|332999897|gb|EGK19480.1| hypothetical protein SFK218_4295 [Shigella flexneri K-218]
gi|333014545|gb|EGK33892.1| hypothetical protein SFK304_4117 [Shigella flexneri K-304]
Length = 294
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 85/289 (29%), Positives = 135/289 (46%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++ + L+KLP +SVDL+FADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDAFAELKKLPTESVDLLFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKP+ALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|300817483|ref|ZP_07097699.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
gi|300529781|gb|EFK50843.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
Length = 294
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 33/289 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+S DLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESDDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLIP 187
+ + + +E ++ K YTFN DA N +
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPG 177
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA R
Sbjct: 178 NVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAVSSGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
FIGIE+ +YI + +R+ EL + ++T + L E
Sbjct: 238 KFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSE 286
>gi|283778311|ref|YP_003369066.1| DNA methylase N-4/N-6 domain-containing protein [Pirellula staleyi
DSM 6068]
gi|283436764|gb|ADB15206.1| DNA methylase N-4/N-6 domain protein [Pirellula staleyi DSM 6068]
Length = 295
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 111/290 (38%), Gaps = 40/290 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+++I+G+ ++ L LPA VDL FADPP+N+ + D +D + +
Sbjct: 7 NQLIQGDCVAGLASLPAGCVDLAFADPPFNIGYDY--------------DEYDDRRATDD 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y + WL RVLKP+GT W+ + +Q + V N
Sbjct: 53 YLTWCDQWLAEVSRVLKPDGTFWLAIGDEYAAELKVAMQRQHGLHCRSWVVWYYTFGVNC 112
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFN-----------------------YDALKAANED 177
+ + +H L PK + + D
Sbjct: 113 KAKF-SRSHAHLFHMVKDPKKFTFNVDEIRVPSARQLVYADNRANPKGRLPDDTWILRPQ 171
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
R+ E+ H Q PE LL RI+ +++ PG+++LDPF GSG
Sbjct: 172 DLPDGFQPDDDTWYFPRVAGTFKERAGWHGCQMPEQLLGRIIKATSNPGELVLDPFSGSG 231
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
T+ VAKKL R ++G E+ ++Y T R+ + ++ K
Sbjct: 232 TTLVVAKKLGRKYLGFELSKEYAARVTDRLKETKSGDDLNGAAEPLKSAP 281
>gi|315154648|gb|EFT98664.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0043]
Length = 393
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 31/286 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I G++++ L+K+ + S+DLI+ DPP+ Q +L ++ DSW S Y
Sbjct: 3 LILGDNLNELKKIESDSIDLIYLDPPFFTQKKQKLKNKENKEYS-FDDSW---ESIAEYT 58
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F + L C+RVLK G++++ + L + + + +
Sbjct: 59 TFIKDRLFECKRVLKETGSIFLHCDKTASHYLRVCLDEVFGMNMFQSEIIWNYKRWSNSK 118
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK---- 198
+ N H+ + + S + K K T D N D + +L
Sbjct: 119 KGLLNNHQNIYFYSKTGKFKFNTIYTDYSSTTNIDQILADRIKDENSKTKYKLDENGEPL 178
Query: 199 -----------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+PTQKP LL +I+ +T+ DIILDPF GSG
Sbjct: 179 IGKEKKGVPLSDVWNIPYLNPKAKERTGYPTQKPILLLEQIIKLTTEENDIILDPFCGSG 238
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
T+ +K L+R +IGI+ +D I +A +R+ +V + L
Sbjct: 239 TTLVASKILKRRYIGIDQSKDAIKLAEERLKNVVKTESNLLKKGES 284
>gi|237730180|ref|ZP_04560661.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908786|gb|EEH94704.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 294
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 86/287 (29%), Positives = 145/287 (50%), Gaps = 33/287 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++SV+LIFADPPYN+ + D + +SWD+ EA+
Sbjct: 16 KIILGDALTELKKLPSESVELIFADPPYNIGKD----------FDGMVESWDE----EAF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + C R+LKP+GT++++ S N+ I L+ + + + +
Sbjct: 62 LAWLFECIDECHRILKPHGTMYIMNSTENMPYID--LKCRPLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
F + +E ++ K YTFN D + + + G
Sbjct: 120 KNYFGSMYEPILMMVKDQK--NYTFNRDDILVEAKTGAKRALIDYRKNPPQPYNQKKVPG 177
Query: 192 S----ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R D + HPTQKP+ALL RI+++S+ P D +LDPF GS T+GA A +L R
Sbjct: 178 NVWEFPRVRYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATAVELGR 237
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
F+GIE+ +Y+ + +R++ IEL + ++T+ + L
Sbjct: 238 KFVGIEINTEYVKMGLRRLSIGSHFSEIELAKVKKRKTKNLSKKSRL 284
>gi|281422930|ref|ZP_06253929.1| modification methylase CcrMI [Prevotella copri DSM 18205]
gi|281403022|gb|EFB33702.1| modification methylase CcrMI [Prevotella copri DSM 18205]
Length = 394
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 101/274 (36%), Positives = 143/274 (52%), Gaps = 10/274 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+S +L++L + VD+IFADPPY L + + + + V WDK S+E +
Sbjct: 13 LYHGDSNIILDQL-EEKVDMIFADPPYFLSNSKKTIQFGKTKVCD-KGDWDKVRSWEEIN 70
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+F R W+ CR++LK NGT+WV G+YHNIF + L F ILN IVW+K +P P G
Sbjct: 71 SFNRIWIEKCRKLLKENGTIWVCGTYHNIFSVEQCLIEFGFKILNIIVWQKLDPPPTPYG 130
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R + E ++WA + + F+YD LK N +M W ER K
Sbjct: 131 GRLNFSAEYIVWARKNTN-VPHCFHYDLLKQMNGGKEMPDVWKFARPGFWERKCGK---- 185
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP LL RI+ + T+ IILDPF GS T+G A L R FIGI+M+++Y+D
Sbjct: 186 -HPTQKPLRLLYRIVQTCTEKEGIILDPFCGSCTTGIAANLLSRKFIGIDMERNYLDYGI 244
Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
+R + K +E +LV
Sbjct: 245 RR--KSEIKDPNIAEKYLQKISENPDEITVLVNH 276
>gi|113868574|ref|YP_727063.1| DNA-methyltransferase [Ralstonia eutropha H16]
gi|113527350|emb|CAJ93695.1| DNA-Methyltransferase [Ralstonia eutropha H16]
Length = 308
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 62/257 (24%), Positives = 113/257 (43%), Gaps = 27/257 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + + + +LP SVDLI ADPPY L + D L+ + Y
Sbjct: 29 RLFQEDMFEGIARLPDGSVDLIVADPPYGLGKDYG---NDSDLLSG-----------QEY 74
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ W+ A L P GTL++ ++ + ML+ ++N+I+W + P
Sbjct: 75 LDWSERWMNAVVPKLAPKGTLYLFCTWQYSPELFVMLKRR-LTMINEIIWDRRVPSMGGT 133
Query: 142 GRRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDVQMRSDWLIPICS 190
R+F + H+ + + + + T + + +
Sbjct: 134 TRKFSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEVGYNPKDLW 193
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
R+ +D E+ HPTQKP ++ R+++SS PG ++LDPF GSGT+ + R F
Sbjct: 194 SVSRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 253
Query: 250 GIEMKQDYIDIATKRIA 266
G E+ +Y+ +A R++
Sbjct: 254 GFEINPEYVQVACDRVS 270
>gi|313207303|ref|YP_004046480.1| DNA methylase n-4/n-6 domain protein [Riemerella anatipestifer DSM
15868]
gi|312446619|gb|ADQ82974.1| DNA methylase N-4/N-6 domain protein [Riemerella anatipestifer DSM
15868]
gi|315022082|gb|EFT35112.1| DNA methylase N-4/N-6 domain protein [Riemerella anatipestifer
RA-YM]
gi|325335248|gb|ADZ11522.1| DNA modification methylase [Riemerella anatipestifer RA-GD]
Length = 299
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 93/242 (38%), Positives = 138/242 (57%), Gaps = 8/242 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G+++ +L K D++FADPPY L NG L + +V WDK FE +
Sbjct: 15 LLHGDTMELLPKF-EHKFDMVFADPPYFLSNNG-LSIQNGKIVSVNKGKWDKSEGFEFIN 72
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R +K + T+W+ G+ HNIF +G +L L F ILN + W K+NP PNF
Sbjct: 73 DFNRKWLSLVREKMKGDATIWISGTMHNIFSVGQILTELGFKILNIVTWEKTNPPPNFSC 132
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F + E +IWA + K Y FNY +K N + QM+ W +P + E+ K
Sbjct: 133 RYFTYSTEQIIWARKTEKVPHY-FNYKLMKQLNGNRQMKDVWKLPAIAPWEKSCGK---- 187
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP ++L+R++++STKP ILDP GS T+G A R F+GI+ +++++ I+
Sbjct: 188 -HPTQKPLSVLTRLILASTKPNAWILDPLAGSSTTGIAANLANRRFLGIDQEEEFLTISK 246
Query: 263 KR 264
R
Sbjct: 247 NR 248
>gi|320160760|ref|YP_004173984.1| methyltransferase [Anaerolinea thermophila UNI-1]
gi|319994613|dbj|BAJ63384.1| methyltransferase [Anaerolinea thermophila UNI-1]
Length = 295
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 67/278 (24%), Positives = 112/278 (40%), Gaps = 24/278 (8%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAV 68
W ++ G+++S+L +LP++SV LI+ DPP+N R +
Sbjct: 1 MTWIRRVYFGDNLSILRRLPSESVHLIYIDPPFNTGKEQSRTRLRVVQSDTGNRRGFGGR 60
Query: 69 T------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
T D F+ Y+AF L R+L PNG+L+ Y + L +
Sbjct: 61 TYESIPIDEKAYPDDFDDYEAFLVPRLEEAYRILTPNGSLYFHIDYREVHYCKIWLDRIF 120
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--------A 174
+ R+ H+ +++ YTFN DA+
Sbjct: 121 GRDCFLNEIIWAYDYGGKPKNRWPAKHDNILFYVK--DPNHYTFNVDAIDREPYMAPGLV 178
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ R + + N + +PTQKP ++ RI+ +S+ GD+++D F GS
Sbjct: 179 GPEKAARGKLPTDVWWHTIVGTNSKEKTGYPTQKPVGVIDRIIKASSNAGDVVMDFFAGS 238
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
GT G KL R FI I+ + I + +R A V+ +
Sbjct: 239 GTVGESCLKLNRQFILIDNHPEAIHVMRQRFAGVEGIE 276
>gi|299066411|emb|CBJ37596.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
solanacearum CMR15]
Length = 270
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 74/267 (27%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ + L SVDL+ ADPPY L + D + EA
Sbjct: 7 DGIFNEDCIAGVGHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A L NG+L++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YLAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKRRLS-MINEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ A +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLGRRF 231
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIE 275
G E+ +Y +A +R+A+V PLG
Sbjct: 232 AGFEINAEYCRVARERVAAVTPLGPQS 258
>gi|153951969|ref|YP_001398881.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
gi|152939415|gb|ABS44156.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
Length = 282
Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats.
Identities = 94/247 (38%), Positives = 137/247 (55%), Gaps = 8/247 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + +L K K DLIFADPPY L +G L + +V WDK + E D
Sbjct: 18 LYQNDCNKLLPKF-EKQFDLIFADPPYFLSNDG-LSIQNGKIVSVNKGDWDKGNDIEKID 75
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F WL + L+ G++ + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 76 EFNLKWLSNAKIALQDTGSILICGTYHNIFSLGRILQKLDFKILNIITWQKTNPPPNFSC 135
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R ++ E +IWA S K + FNY+ L+ N + QMR W + E+ K
Sbjct: 136 RYLTHSTEQIIWARKSHK-YKHIFNYEILRFLNSNKQMRDVWTFNAIAPWEKTNGK---- 190
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP ALL+R+++ ++ +I DPF GS T+G A L R FIG E + ++I+I+
Sbjct: 191 -HPTQKPLALLTRLILMASNEDCLICDPFSGSSTTGIGANLLNRKFIGFEKESEFIEISI 249
Query: 263 KRIASVQ 269
R ++
Sbjct: 250 ARKKELE 256
>gi|17546701|ref|NP_520103.1| DNA-methyltransferase (DNA-modification methylase) protein
[Ralstonia solanacearum GMI1000]
gi|17429000|emb|CAD15684.1| probable dna-methyltransferase (dna-modification methylase) protein
[Ralstonia solanacearum GMI1000]
Length = 270
Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats.
Identities = 74/267 (27%), Positives = 122/267 (45%), Gaps = 27/267 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ + +L SVDL+ ADPPY L + D + EA
Sbjct: 7 DGIFNEDCIAGVGRLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A L NG+L++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YLAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKRRLS-MINEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ A +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLGRRF 231
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIE 275
G E+ +Y +A +R+A+V PLG
Sbjct: 232 AGFEINAEYCRVARERVAAVTPLGPQS 258
>gi|60682880|ref|YP_213024.1| putative methyltransferase [Bacteroides fragilis NCTC 9343]
gi|60494314|emb|CAH09109.1| putative DNA methylase [Bacteroides fragilis NCTC 9343]
Length = 286
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 80/272 (29%), Positives = 125/272 (45%), Gaps = 33/272 (12%)
Query: 22 KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
KII G++I L+ ++ SVDLIFADPPYN+ N D W + +
Sbjct: 10 KIIHGDAIEALKNEIEDNSVDLIFADPPYNIGKN----------FAGCIDKW---ETDDK 56
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y ++ WL C R LKP+G +V+ S + L+ + I + S+ +
Sbjct: 57 YLSWCYQWLDLCIRKLKPSGAFYVMTSTQFMPFFDLYLREKLTILSRLIWYYDSSGV--Q 114
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICS 190
F + +E +++ YTFN +A+ + +
Sbjct: 115 AKNYFGSMYEPILFCVK--DKNNYTFNSEAILVEAKTGAKRGLIDYRKNPPQPYSTEKVP 172
Query: 191 GS----ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
G+ R+R + D + HPTQKP ALL RI+ +S+ GD+ILDPF G+ T+ VAK L
Sbjct: 173 GNVWEFARVRYRMDEYENHPTQKPVALLERIIKASSNEGDLILDPFSGTFTTAFVAKTLN 232
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
R IGIE+++DY+ I +R+ +
Sbjct: 233 RRAIGIELQEDYVKIGLRRLELASEYNGEAIQ 264
>gi|153831218|ref|ZP_01983885.1| DNA methylase [Vibrio cholerae 623-39]
gi|148873298|gb|EDL71433.1| DNA methylase [Vibrio cholerae 623-39]
Length = 314
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 43/293 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+SI L+ L ++SVDLIF+DPPYN+ WDKF + E Y
Sbjct: 40 TLYEGDSIEWLKTLDSESVDLIFSDPPYNINKA----------------DWDKFETQEKY 83
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ W+ RVLK GTL+V G + + + +
Sbjct: 84 IDWSMQWISEAYRVLKKEGTLYVCG---FSEILADIKHPSMKYFKSCRWLIWHYKNKANL 140
Query: 142 GRRFQNAHETLIWASPSPKAK---------------GYTFNYDALKAANEDVQMRSDWLI 186
G + +HE+++ S K Y + A + + R D
Sbjct: 141 GNDWGRSHESILHLRKSNKKIFNVDDVRVPYGGHTLKYPSHPQAQTSQYSNGSKRKDVWT 200
Query: 187 PICSGSE---------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
P G++ + HPTQKPE L+ + +++S+ GD+++DPF GSGT+
Sbjct: 201 PHPRGAKPRDVIEVPTTCNGMGEKTKHPTQKPEELVRKFILASSNEGDLVIDPFSGSGTT 260
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
VA++L R + ++ Y + A R+ ++ E + R +
Sbjct: 261 AVVAEQLGRRWAACDINPQYNNWAMDRLDNIVHRTKQEWIDFDRDNDKRRNSI 313
>gi|309783469|ref|ZP_07678172.1| DNA (cytosine-5-)-methyltransferase [Ralstonia sp. 5_7_47FAA]
gi|308917755|gb|EFP63449.1| DNA (cytosine-5-)-methyltransferase [Ralstonia sp. 5_7_47FAA]
Length = 273
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 27/277 (9%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ + L SVDL+ ADPPY L + D + +A
Sbjct: 7 DGIFNEDCITGVGHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------DA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A R L NG+L++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKQR-LTMVNEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ A +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAACARLGRRF 231
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
G E+ DY +A +R+A+V + + E
Sbjct: 232 AGFEINADYCRVARERVAAVHAAADANAQPTESQAPE 268
>gi|187929215|ref|YP_001899702.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
pickettii 12J]
gi|187726105|gb|ACD27270.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12J]
Length = 273
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 74/277 (26%), Positives = 123/277 (44%), Gaps = 27/277 (9%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ +E L SVDL+ ADPPY L + D + +A
Sbjct: 7 DGIFNEDCITGVEHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------DA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A R L NG+L++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKRR-LTMVNEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ A +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAACARLGRRF 231
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
G E+ DY +A +R+A+V + + E
Sbjct: 232 AGFEINADYCRVARERVAAVHAAAATNAQPIESQAPE 268
>gi|118576552|ref|YP_876295.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118195073|gb|ABK77991.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 264
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 17/249 (6%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWDKFS 76
+D+I G+ I + + SVDLI DPP+ + R + +++D +
Sbjct: 17 RDRIFHGDCIEGMAAMKESSVDLIVTDPPFAIGFGARRANYNRKEGNVMDGYNEI----- 71
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y FT W+ RVLK G+++V + N+ I + F +N I+WR
Sbjct: 72 TPAEYPGFTGRWMAGAHRVLKETGSMFVFSGWTNLQDILRAIDETGFKTINHIIWRYQFG 131
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ R + H L K + YT + + + D E
Sbjct: 132 VYTKRRFVSSHYH-CLYVCKNDKKRRFYTESRHS-----DTKSRYRDMEDVWVINREYW- 184
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
G+K PT+ P L+ +IL S++ GD+++DPF GSG V+K++ R + G E+ ++
Sbjct: 185 --SGKKKTPTKLPGELIRKILQYSSREGDLVMDPFLGSGQVAVVSKEMGRRYAGFEIVRE 242
Query: 257 YIDIATKRI 265
Y D A +R+
Sbjct: 243 YYDFALERL 251
>gi|313667091|gb|ADR72989.1| M.BspEI [Bacillus sp. NEBM136]
Length = 314
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 77/290 (26%), Positives = 125/290 (43%), Gaps = 48/290 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ G+SI L+ L +SVDLIFADPPYN++ WD F + E+Y
Sbjct: 41 KLFLGDSIQWLKTLETESVDLIFADPPYNIKKA----------------EWDTFENQESY 84
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ W++ RVLK NG+L++ G + + + K+
Sbjct: 85 IQWSLEWIVEASRVLKKNGSLYICGFSEILADLKHPASKYFKGCKWLVWHYKNKA---NL 141
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSDWLIPICSGSERLRNK 198
G+ F +HE+L+ + K YT N D ++ GS + R+
Sbjct: 142 GKDFGRSHESLLHFRKTKK---YTMNQDLVRIPYGGHTLKYPSHPQAESSQYGSGKKRDN 198
Query: 199 -----------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ + HPTQKPE L+ + +++S+ GD+ILDPF GSG
Sbjct: 199 WMPHPLGAKPKDVIEVPTTCNGMNEKTPHPTQKPEELVRKFILASSNRGDVILDPFSGSG 258
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
T+ VA++L R ++ + + Y + A +RI + + E K E
Sbjct: 259 TTAVVAEQLGRKWLACDTNRQYNEWAIERIQKAEHKTDEEWFWYDRKNEE 308
>gi|124003829|ref|ZP_01688677.1| adenine-specific DNA methylase [Microscilla marina ATCC 23134]
gi|123990884|gb|EAY30351.1| adenine-specific DNA methylase [Microscilla marina ATCC 23134]
Length = 403
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 77/307 (25%), Positives = 126/307 (41%), Gaps = 35/307 (11%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+K+ +G+ I +L KL A SVDL++ DPP+ Q N L D S +D W S ++
Sbjct: 4 NKLYQGHCIEILRKLEADSVDLVYFDPPFFTQKNHTLTNRDGSKKYQFSDHW---KSLDS 60
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y L+ RRVLK +G++++ I T+L + S +
Sbjct: 61 YLVLIEGCLIESRRVLKNSGSVFLHCDKTVSHHIRTVLDKVFGVKNFRSEIIWSYKRWSN 120
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED----------------------- 177
+ NAH+ + + S + + K + D + N D
Sbjct: 121 SKKGLLNAHQNIYFYSKTKEFKFNQYYTDYAPSTNVDQILQERKKTANGKSVYKTDDSGK 180
Query: 178 ----VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ + L + +PTQKP LL +IL + GD+I+DPF G
Sbjct: 181 VILGKEKKGVPLSDVWEIPYLNPKAKERVGYPTQKPVLLLKQILNVGSNKGDLIVDPFCG 240
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
SGT+ AK L R+FIGI+ ++ I +A +R+ + + L K+
Sbjct: 241 SGTTCVAAKSLERNFIGIDSSEEAISLANQRLQDMLITDSALL-----KKGAKSYIEKTE 295
Query: 294 VERGLIQ 300
E L++
Sbjct: 296 EELNLLK 302
>gi|156741069|ref|YP_001431198.1| adenine-specific DNA-methyltransferase [Roseiflexus castenholzii
DSM 13941]
gi|156232397|gb|ABU57180.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
castenholzii DSM 13941]
Length = 305
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 24/284 (8%)
Query: 9 INENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQL------------ 53
+ E Q+ + + + I +++ +L LP+ SVDLI+ DPP+N
Sbjct: 1 MREAQHFMID-HNTTGAIYLADNLDILRALPSGSVDLIYIDPPFNTGKHQQRVQLKTERS 59
Query: 54 -NGQLYRPDHSLVDAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+G ++ +FS F+ Y AF L+ RVL P+G+ + Y +
Sbjct: 60 DDGDRVGFQGQRYKSIILGSRRFSDVFDDYLAFLEPRLVEAHRVLAPSGSFYFHVDYREV 119
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN---- 167
+L + + R+ H+ ++ + + +
Sbjct: 120 HYCKVLLDAIFGRESFLNEIIWAYDYGGRPKNRWPPKHDNILLYVKNLSRYVFNVDEIER 179
Query: 168 --YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
Y A + R + N + +PTQKP +L RI+ +S+KPG
Sbjct: 180 IPYMAPGLVGPEKAARGKLPTDCWWHTIVPTNGAEKTGYPTQKPLGILRRIVQASSKPGS 239
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++LD F GSGT+G A +L R FI ++ + + + +R V
Sbjct: 240 LVLDFFAGSGTTGIAALELGRRFILVDNNPEALAVMARRFDGVA 283
>gi|159900577|ref|YP_001546824.1| site-specific DNA-methyltransferase [Herpetosiphon aurantiacus ATCC
23779]
gi|159893616|gb|ABX06696.1| Site-specific DNA-methyltransferase (adenine-specific)
[Herpetosiphon aurantiacus ATCC 23779]
Length = 281
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 24/273 (8%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------NGQLYRPDHSLV 65
+K+ G++++VL LPA S DLI+ DPP+N ++ H
Sbjct: 1 MNKLYFGDNLAVLATLPAASYDLIYIDPPFNTGKIQSRTQLRTVRSEQGDRVGFGGHRYS 60
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
SF+ + AF LL R+LKP G+ + Y + ++ +
Sbjct: 61 SIKIGERAYGDSFDDFLAFIEPRLLEAYRLLKPQGSFFFHIDYREVHYCKVLIDQIFGRD 120
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--------ALKAANED 177
+ +++ H+T++W + + YTFNYD A +
Sbjct: 121 SFINEIIWAYDYGARSRKKWSTKHDTILWYAK--DPENYTFNYDQIDRIPYMAPGLVGPE 178
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
R + + N + +PTQKP A+L+RI+ + P D +LD F GSG+
Sbjct: 179 KAARGKTPTDVWWNTIVSPNGKEKTGYPTQKPLAILNRIVRVHSNPNDQLLDFFAGSGSF 238
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
G A + R+F I+ I++ +R+A +P
Sbjct: 239 GEAAARNGRNFTLIDQNPQAIEVMRQRLAFAEP 271
>gi|315657003|ref|ZP_07909888.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492395|gb|EFU82001.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 432
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 52/261 (19%), Positives = 108/261 (41%), Gaps = 16/261 (6%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDS 71
+++I G ++ V+ L SVD I+ DPP+N + +R D V
Sbjct: 47 ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIRTHHRGDSKRTITVKQY 106
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D++ + Y L R+ + P GT+++ +H+ + ++ +
Sbjct: 107 GDRWQT-ADYIQNLYERLTLLRQFMSPTGTIFLHCDWHSSAALRLVMDEVFGGSNLINEI 165
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDV--QMRSDW 184
+ R F + H+T+++ + + + + Y+A + +
Sbjct: 166 VWAYASGGGSRRAFGHKHDTILFYARDRRRYYFDPDAVRVAYNAAISPKRRKLFNPQGMV 225
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ + D +PTQKP ++ R + ++ PG +++D F GSG++ A +L
Sbjct: 226 APDVWQIPRPPNHSDTWVGYPTQKPLEVMQRAIDAACPPGGLVMDCFAGSGSTLVAAAQL 285
Query: 245 RRSFIGIEMKQDYIDIATKRI 265
R F+GIE + +A +R+
Sbjct: 286 GRRFLGIERNSLGVHLARRRL 306
>gi|241663406|ref|YP_002981766.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
pickettii 12D]
gi|240865433|gb|ACS63094.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
Length = 273
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 27/256 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ + L SVDL+ ADPPY L + D + +A
Sbjct: 7 DGIFNEDCITGVGHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------DA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A R L NG+L++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YLAWSERWIDAVRPKLARNGSLYLFCTWQYAPELFVMLKQR-LTMVNEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ AV +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMILASCPPGGLVLDPFLGSGTTAAVCARLGRRF 231
Query: 249 IGIEMKQDYIDIATKR 264
G E+ DY +A +R
Sbjct: 232 AGFEINADYCRVARER 247
>gi|228473121|ref|ZP_04057878.1| DNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
gi|228275703|gb|EEK14480.1| DNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
Length = 270
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 93/242 (38%), Positives = 139/242 (57%), Gaps = 8/242 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G+++ +L + + D++FADPPY L G L + +V WDK +
Sbjct: 15 LLHGDTMELLPQF-HRKFDMVFADPPYFLSNGG-LTVNNGEIVSVDKGDWDKSKGIAFVN 72
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R WL R V+K T+W+ G+ HNIF +G +L L F ILN I W K+NP PNF
Sbjct: 73 DFNRQWLTLVREVMKEEATIWISGTMHNIFSVGQILTELGFKILNIITWEKTNPPPNFSC 132
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ E +IWA K Y FNY+ +K N + QM+ W P + E+ K
Sbjct: 133 RYFTHSTEQIIWARKEEKTPHY-FNYELMKQLNGNKQMKDVWRFPAIAPWEKSCGK---- 187
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP ++L+R++++ST+ ILDPF GS T+G A L R F+GI+ +QD+++++
Sbjct: 188 -HPTQKPLSVLTRLILASTQTNAWILDPFTGSSTTGIAANLLVRKFVGIDKEQDFLELSK 246
Query: 263 KR 264
KR
Sbjct: 247 KR 248
>gi|269926576|ref|YP_003323199.1| DNA methylase N-4/N-6 domain protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269790236|gb|ACZ42377.1| DNA methylase N-4/N-6 domain protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 276
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 62/260 (23%), Positives = 108/260 (41%), Gaps = 24/260 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+++S L+KL + SV L++ADPP+ R + VD D + + Y
Sbjct: 3 TVYLGDNLSFLKKLASGSVTLVYADPPF---------RTNRIRVDENGKYNDVWQGIDHY 53
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ L R+L +GT ++ ++ + ++ ++
Sbjct: 54 LEWLAPRLCEIHRILSEDGTFYLHLDRRSVHYVRLLMDDIFGANNFQNEIIWHYTGGGRG 113
Query: 142 GRRFQNAHETLIWASPSPKAKGYT-----FNYDALKAANEDVQMRSDWLIPICSGSERLR 196
R F + H+ ++ + K K A ++ RS + L
Sbjct: 114 SRHFPHKHDNILVYHKTRKYKFNVDAVREPYAKTSGYARSGIRARSGKFYSPHPLGKVLD 173
Query: 197 N----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ +P+QKPE LL RI+V+S+ GDI+LDPF GSGT+ A KL R
Sbjct: 174 DVWFIPIVNPLSPERTGYPSQKPEELLRRIIVASSDKGDIVLDPFCGSGTTLVAAHKLER 233
Query: 247 SFIGIEMKQDYIDIATKRIA 266
+IG++ + I I +R+
Sbjct: 234 QWIGMDSSPEAISICIERLK 253
>gi|148993008|ref|ZP_01822602.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP9-BS68]
gi|169834116|ref|YP_001694863.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
Hungary19A-6]
gi|225857062|ref|YP_002738573.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
P1031]
gi|147928209|gb|EDK79226.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP9-BS68]
gi|168996618|gb|ACA37230.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
Hungary19A-6]
gi|225725859|gb|ACO21711.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
P1031]
Length = 396
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 71/309 (22%), Positives = 130/309 (42%), Gaps = 34/309 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK---RTEPRVAFN 291
GT+ +K L R+++GI++ ++ I+I +R+ +V + L +TE
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSDLLNKGIEAYRTKTEEEENIL 297
Query: 292 LLVERGLIQ 300
L++ ++Q
Sbjct: 298 KLLQAKIVQ 306
>gi|298346628|ref|YP_003719315.1| putative site-specific DNA-methyltransferase [Mobiluncus curtisii
ATCC 43063]
gi|298236689|gb|ADI67821.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Mobiluncus curtisii ATCC 43063]
Length = 291
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 69/278 (24%), Positives = 109/278 (39%), Gaps = 35/278 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-----------------------NGQL 57
+ ++ G+++ VLE+LP +S LI+ DPP+N GQ
Sbjct: 12 NLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRSDVPVVGSRVGFQGQT 71
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y V A D SF Y F L R+L P GTL++ Y + +
Sbjct: 72 YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDAL 171
L L + R++ H+ ++ K + + Y A
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGGRSKRKWPAKHDNILVYVKDQKQYYFDSDSVDREPYMAP 185
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ R + + + + TQKPE +L RI+ +S++PGD +LD F
Sbjct: 186 GLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWVLDFF 245
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GSGT+GAVA L R F+ I+ + I+I R+
Sbjct: 246 AGSGTTGAVAGTLERRFVLIDENPEAIEIMRSRLNRAN 283
>gi|300691105|ref|YP_003752100.1| site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
solanacearum PSI07]
gi|299078165|emb|CBJ50808.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
solanacearum PSI07]
Length = 270
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 27/258 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ + L SVDL+ ADPPY L + D + EA
Sbjct: 7 DGIFNEDCIAGVGHLADGSVDLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A L NG+L++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YMAWSERWIEAVLPKLARNGSLYLFCTWQYAPELFVMLKRRLQ-MINEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ +L R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARLGRRF 231
Query: 249 IGIEMKQDYIDIATKRIA 266
G E+ +Y +A +R+A
Sbjct: 232 AGFEINAEYCRVARERVA 249
>gi|228470286|ref|ZP_04055190.1| DNA methylase [Porphyromonas uenonis 60-3]
gi|228308029|gb|EEK16904.1| DNA methylase [Porphyromonas uenonis 60-3]
Length = 285
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 33/261 (12%)
Query: 21 DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KII G+++ L + + SVDL+FADPPYN+ N D WD S E
Sbjct: 7 NKIIHGDALQALSECISDNSVDLVFADPPYNIGKN----------FAGCLDKWD---SDE 53
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+Y + +WL C + LKP G L+V+ S + L+ + + +
Sbjct: 54 SYLRWCYSWLDLCIQKLKPTGALYVMTSTQFMPYFDLYLRERLDILSR--IVWSYDSSGV 111
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWL 185
R F + +E +++ + YTFN N + +
Sbjct: 112 QAKRYFGSLYEPILFCVK--DKRQYTFNASDILVEAKTGAKRGLIDYRKNPPQPYSTTKV 169
Query: 186 IPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
R+R + + HPTQKP LL RI+ +S+ GD++LDPF G+ T+ VA L
Sbjct: 170 PGNVWEFTRVRYRMPEYENHPTQKPIELLERIIKASSNEGDVVLDPFSGTFTTSYVASLL 229
Query: 245 RRSFIGIEMKQDYIDIATKRI 265
R IGIE++++Y+ I +R+
Sbjct: 230 HRKSIGIELQEEYVKIGLRRL 250
>gi|269838385|ref|YP_003320613.1| DNA methylase N-4/N-6 domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269787648|gb|ACZ39791.1| DNA methylase N-4/N-6 domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 307
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 34/279 (12%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR------PDHSLVDAVTDS 71
E+ D I+ ++++VL LP V LI+ DPP+N L R PD V +
Sbjct: 7 EYVDTIVYSDNLAVLRTLPDGCVPLIYIDPPFNTGKTRSLTRLRTTRDPDGDRVGFQGQT 66
Query: 72 WD-------KFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ +F+ F+ Y AF L+ RRVL PNGTL+V + + +L +
Sbjct: 67 YRTLRLGTTRFADVFDDYLAFLEPRLVEARRVLAPNGTLYVHLDPREVHYVKVLLDGIFG 126
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-------- 175
+ RR+ H+ ++ + Y FN DA+
Sbjct: 127 RECFLNEIIWAYDFGGRSTRRWPAKHDNILVYV--ASPRDYVFNVDAIDRIPYMAPGLVG 184
Query: 176 -----EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
W I R +PTQKP +L RI+ +S+ PGD++LD
Sbjct: 185 PEKAARGKLPTDTWWATIVPTKAR-----ERTGYPTQKPLTILRRIIAASSNPGDLVLDF 239
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
F GSGT+G A++L R F+ ++ + + + +R A
Sbjct: 240 FAGSGTTGVAARELGRRFLLVDNNPEALQVMARRFAGEA 278
>gi|209524406|ref|ZP_03272955.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|79835531|gb|ABB52099.1| Mod [Arthrospira platensis]
gi|209495197|gb|EDZ95503.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 295
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 82/311 (26%), Positives = 136/311 (43%), Gaps = 44/311 (14%)
Query: 18 EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++ I G++I +L + A SV+LIFADPPYN+ + D+++
Sbjct: 7 DDRNTIFHGDAIQILSSQIAANSVNLIFADPPYNIGKKFSKFH-------------DQWN 53
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E Y ++ WL C RVLKPNGTL+V+ S ++ L+ + + +
Sbjct: 54 SEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQKMSILSR--IVWHYDS 111
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY------------------TFNYDALKAANEDV 178
+ F + +E ++ K + + N +
Sbjct: 112 SGVQAKKYFGSMYEPILHCVKDQKNYIFNSADIKVEAKTGAQRKLIDYRKPVPTQYNSEK 171
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ W P R R + E HP QKPE+LL RI+++ST D++LDPF G+ T+
Sbjct: 172 VPGNVWYFPRV----RYRMAEYEN-HPAQKPESLLERIILASTNTHDLVLDPFAGTFTTA 226
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
AVAK+L R + IE +++Y+ I +R+ Q +L +T+ F
Sbjct: 227 AVAKRLGRISMSIESQEEYLKIGLRRVLGWQEYQGEKLLPPAKNQTKQNTNFPT---NQF 283
Query: 299 IQPGQILTNAQ 309
IQP + +A
Sbjct: 284 IQPS--IFDAD 292
>gi|304389659|ref|ZP_07371619.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304327063|gb|EFL94301.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Mobiluncus curtisii subsp. curtisii ATCC 35241]
Length = 291
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 69/278 (24%), Positives = 110/278 (39%), Gaps = 35/278 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-----------------------NGQL 57
+ ++ G+++ VLE LP +S LI+ DPP+N GQ
Sbjct: 12 NLVVAGDNLPVLELLPDESFQLIYIDPPFNTGKVQSRQSLKTVRTDVPVAGSRVGFQGQT 71
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y V A D SF Y F L R+L P GTL++ Y + +
Sbjct: 72 YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDAL 171
L L + R++ H+ ++ K + + Y A
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGGRSKRKWPAKHDNILVYVKDQKQYYFDSDSVDREPYMAP 185
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ R + + + + TQKPE +L RI+ +S++PGD +LD F
Sbjct: 186 GLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWVLDFF 245
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GSGT+GAVA L R F+ I+ + I+I +R++
Sbjct: 246 AGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRAN 283
>gi|168493334|ref|ZP_02717477.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CDC3059-06]
gi|183576799|gb|EDT97327.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CDC3059-06]
Length = 392
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSDLLN 280
>gi|15901283|ref|NP_345887.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae TIGR4]
gi|14972920|gb|AAK75527.1| putative type II DNA modification methyltransferase [Streptococcus
pneumoniae TIGR4]
Length = 396
Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGVDMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|304389705|ref|ZP_07371664.1| DNA methylase RsrI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304326881|gb|EFL94120.1| DNA methylase RsrI [Mobiluncus curtisii subsp. curtisii ATCC 35241]
Length = 433
Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats.
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 17/262 (6%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDS 71
+++I G ++ V+ L SVD I+ DPP+N + +R D V
Sbjct: 47 ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGTDYVQRIRTHHRGDSKRTITVKQY 106
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D++ + Y L RR L P GT+++ +H+ + ++ +
Sbjct: 107 GDRWQT-ADYLQNLYERLTLLRRFLSPTGTIFLHCDWHSSAALRLVMDEVFGGSNLINEI 165
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWL 185
+ R F + H+T+++ + + + + + A+ ++ +
Sbjct: 166 VWAYASGGGSRRAFGHKHDTILFYARNRRRYYFDPDAVRVAYNAAIAPKRRELFNPQGMV 225
Query: 186 IPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA-VAKK 243
P R N + +PTQKP ++ R + ++ PG +++D F GSG++ A +
Sbjct: 226 APDVWQISRPPNHSDTWVGYPTQKPLEVMQRAIAAACPPGGLVMDCFAGSGSTLVAAAAQ 285
Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
L R F+GIE + +A +R+
Sbjct: 286 LGRRFLGIERNSLGVHLARRRL 307
>gi|148984771|ref|ZP_01818024.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP3-BS71]
gi|149011671|ref|ZP_01832867.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
SP19-BS75]
gi|168483942|ref|ZP_02708894.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CDC1873-00]
gi|168486127|ref|ZP_02710635.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CDC1087-00]
gi|182684389|ref|YP_001836136.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae CGSP14]
gi|194398500|ref|YP_002038079.1| type II DNA modification methyltransferase [Streptococcus
pneumoniae G54]
gi|221232165|ref|YP_002511318.1| DNA modification methylase [Streptococcus pneumoniae ATCC 700669]
gi|225859198|ref|YP_002740708.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
70585]
gi|225860791|ref|YP_002742300.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229942|ref|ZP_06963623.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|298255682|ref|ZP_06979268.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|298502615|ref|YP_003724555.1| type II DNA modification methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|303253831|ref|ZP_07339960.1| putative DNA modification methylase [Streptococcus pneumoniae
BS455]
gi|303259027|ref|ZP_07345006.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP-BS293]
gi|303261711|ref|ZP_07347658.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP14-BS292]
gi|303264380|ref|ZP_07350300.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS397]
gi|303267450|ref|ZP_07353303.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS457]
gi|303269308|ref|ZP_07355081.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS458]
gi|307127001|ref|YP_003879032.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
670-6B]
gi|18699604|gb|AAL78652.1|AF469000_1 XbaI methylase [Streptococcus pneumoniae]
gi|147764102|gb|EDK71034.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
SP19-BS75]
gi|147922793|gb|EDK73909.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP3-BS71]
gi|172042720|gb|EDT50766.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CDC1873-00]
gi|182629723|gb|ACB90671.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae CGSP14]
gi|183570735|gb|EDT91263.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CDC1087-00]
gi|194358167|gb|ACF56615.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae G54]
gi|220674626|emb|CAR69192.1| putative DNA modification methylase [Streptococcus pneumoniae ATCC
700669]
gi|225722056|gb|ACO17910.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
70585]
gi|225727628|gb|ACO23479.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238210|gb|ADI69341.1| type II DNA modification methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|301800290|emb|CBW32913.1| putative DNA modification methylase [Streptococcus pneumoniae
OXC141]
gi|301802166|emb|CBW34907.1| putative DNA moodification methylase [Streptococcus pneumoniae
INV200]
gi|302599204|gb|EFL66221.1| putative DNA modification methylase [Streptococcus pneumoniae
BS455]
gi|302637291|gb|EFL67779.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP14-BS292]
gi|302639970|gb|EFL70426.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP-BS293]
gi|302641138|gb|EFL71512.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS458]
gi|302643011|gb|EFL73305.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS457]
gi|302646192|gb|EFL76419.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS397]
gi|306484063|gb|ADM90932.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
670-6B]
gi|327389617|gb|EGE87962.1| DNA methylase family protein [Streptococcus pneumoniae GA04375]
gi|332074753|gb|EGI85227.1| DNA methylase family protein [Streptococcus pneumoniae GA17545]
Length = 396
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|315656957|ref|ZP_07909842.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492349|gb|EFU81955.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 291
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 35/278 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-----------------------NGQL 57
+ ++ G+++ VLE+LP +S LI+ DPP+N GQ
Sbjct: 12 NLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRSDAPVAGSRVGFQGQT 71
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y V A D SF Y F L R+L P GTL++ Y + +
Sbjct: 72 YETVRGKVTAYND------SFSDYWGFLEPRLEQAWRLLAPTGTLYLHLDYREVHYAKVL 125
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--- 174
L L + R++ H+ ++ K + + +
Sbjct: 126 LDALFGRDCFLNEIIWAYDYGGRSKRKWPAKHDNILVYVKDQKQYYFDSDSVDREPYMVP 185
Query: 175 ---NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ R + + + + TQKPE +L RI+ +S++PGD +LD F
Sbjct: 186 GLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSRPGDWVLDFF 245
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GSGT+GAVA L R F+ I+ + I+I +R++
Sbjct: 246 AGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRAN 283
>gi|148997514|ref|ZP_01825119.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP11-BS70]
gi|168489597|ref|ZP_02713796.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
SP195]
gi|168575894|ref|ZP_02721809.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
MLV-016]
gi|307068084|ref|YP_003877050.1| adenine specific DNa methylase Mod [Streptococcus pneumoniae AP200]
gi|147756569|gb|EDK63610.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP11-BS70]
gi|183571882|gb|EDT92410.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
SP195]
gi|183578247|gb|EDT98775.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
MLV-016]
gi|301794465|emb|CBW36902.1| putative DNA modification methylase [Streptococcus pneumoniae
INV104]
gi|306409621|gb|ADM85048.1| Adenine specific DNA methylase Mod [Streptococcus pneumoniae AP200]
gi|332073737|gb|EGI84216.1| DNA methylase family protein [Streptococcus pneumoniae GA17570]
gi|332203261|gb|EGJ17329.1| DNA methylase family protein [Streptococcus pneumoniae GA47901]
Length = 396
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|225854874|ref|YP_002736386.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
JJA]
gi|225723405|gb|ACO19258.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
JJA]
Length = 405
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|315655141|ref|ZP_07908043.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii ATCC
51333]
gi|315490622|gb|EFU80245.1| DNA methylase N-4/N-6 domain protein [Mobiluncus curtisii ATCC
51333]
Length = 432
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/261 (19%), Positives = 107/261 (40%), Gaps = 16/261 (6%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-----QLYRPDHSLVDAVTDS 71
+++I G ++ V+ L SVD I+ DPP+N + +R V
Sbjct: 47 ENRIYVGENLQVMSGLLPQYEGSVDCIYIDPPFNSGADYVQRIRTHHRGGSKRTITVKQY 106
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D++ + Y L RR + P GT+++ +H+ + ++ +
Sbjct: 107 GDRWHT-ADYLQNLYERLTLLRRFMAPTGTIFLHCDWHSSAALRLVMDEVFGGNNLINEI 165
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDV--QMRSDW 184
+ R F + H+T+++ + + + + Y+A + +
Sbjct: 166 VWAYASGGGSRRAFGHKHDTILFYARDRRRYYFDPDAVRVAYNAAISPKRRKLFNPQGMV 225
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ + D +PTQKP ++ R + ++ PG +++D F GSG++ A +L
Sbjct: 226 APDVWQIPRPPNHSDTWVGYPTQKPLEVMQRAIDAACPPGGLVMDCFAGSGSTLVAAAQL 285
Query: 245 RRSFIGIEMKQDYIDIATKRI 265
R F+GIE + +A +R+
Sbjct: 286 GRRFLGIERNSLGVHLARRRL 306
>gi|94311402|ref|YP_584612.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
gi|93355254|gb|ABF09343.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
Length = 311
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 27/261 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + + + ++++P S+DL+ ADPPY L + D L+ +AY
Sbjct: 32 RLYQEDVLEGIKRIPDGSIDLVVADPPYGLGKDYG---NDSDLLSG-----------DAY 77
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ W+ A + P GTL++ ++ + ML+ ++N+I+W + P
Sbjct: 78 LEWSERWMDAIVPKIAPRGTLYLFCTWQYSPELFVMLKRRMT-MINEIIWDRRVPSMGGT 136
Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
R+F + H+ + + + T + + +
Sbjct: 137 TRKFSSVHDNIGFFARQRDYFFDLDPVRIPYDAETKKARSRPRFEGKKWLEVGYNPKDLW 196
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
R+ +D E+ HPTQKP ++ R+++SS PG I+LDPF GSGT+ + RSF+
Sbjct: 197 SVPRIHRQDPERADHPTQKPLEIVERMVLSSCPPGGIVLDPFTGSGTTAVACVRHGRSFV 256
Query: 250 GIEMKQDYIDIATKRIASVQP 270
G EM +Y + +R+ + QP
Sbjct: 257 GFEMNPEYAGLVRERVTAAQP 277
>gi|148990531|ref|ZP_01821666.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP6-BS73]
gi|147924219|gb|EDK75317.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP6-BS73]
Length = 325
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGVDMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|168491335|ref|ZP_02715478.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CDC0288-04]
gi|183574390|gb|EDT94918.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CDC0288-04]
Length = 392
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T D++LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDVVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|15903330|ref|NP_358880.1| type II DNA modification (methyltransferase [Streptococcus
pneumoniae R6]
gi|116516980|ref|YP_816726.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae D39]
gi|15458929|gb|AAL00091.1| DNA modification methyltransferase [Streptococcus pneumoniae R6]
gi|116077556|gb|ABJ55276.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae D39]
Length = 392
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|149007299|ref|ZP_01830957.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP18-BS74]
gi|237650442|ref|ZP_04524694.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CCRI 1974]
gi|237821039|ref|ZP_04596884.1| DNA modification methyltransferase M.XbaI [Streptococcus pneumoniae
CCRI 1974M2]
gi|147761103|gb|EDK68071.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP18-BS74]
gi|332200872|gb|EGJ14944.1| DNA methylase family protein [Streptococcus pneumoniae GA41317]
gi|332201882|gb|EGJ15952.1| DNA methylase family protein [Streptococcus pneumoniae GA47368]
Length = 325
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|147669683|ref|YP_001214501.1| DNA methylase N-4/N-6 domain-containing protein [Dehalococcoides
sp. BAV1]
gi|146270631|gb|ABQ17623.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. BAV1]
Length = 733
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 78/434 (17%), Positives = 152/434 (35%), Gaps = 92/434 (21%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNLQ 52
Q + + + + W +K+I G++ +L L + LI+ DPP+++
Sbjct: 73 QPDMFSFDSRGRQLKGWTNKLIWGDNKLILSSLKNGPLREEIERQGGIKLIYIDPPFDVG 132
Query: 53 LNGQL----------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
+ + +P+ A D+W K + ++ + L+ R +L +G++
Sbjct: 133 ADFSMDIEIGEDTFTKKPNVLEEIAYRDTWGKGTD--SFISMIYERLVLMRDLLAKDGSI 190
Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS---- 158
+V + + +L + +N + M + G+ F +HET++
Sbjct: 191 YVHCDWRVNSYLKLVLDEVFSGFVNTEIIWICGLMGS--GKVFPKSHETILLYRKQNSIF 248
Query: 159 -------------------PKAKGYTFNYDALKAANEDVQMRSDWL-------------- 185
+ YT ++ N S +
Sbjct: 249 NMPLRLGLSPRITNALQKDNEGWFYTRGQESSGGKNWLKSYISKEVSFSKEKAIEEANQN 308
Query: 186 -----IPICSGSERLRN-------------KDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ G + L + +PTQKPEALL RI+ +S+ GD++
Sbjct: 309 RPQPAWDVWIGKKELAKAFNDFPVGTYAYTDQEKVGYPTQKPEALLERIIKASSNEGDLV 368
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
D F GSGT+ AVA+KL R +I ++ + + KR+ VQ E R
Sbjct: 369 ADFFCGSGTTAAVAEKLGRKWIATDLGKFAVHTTRKRMIGVQRQLKAE---NKDFRAFEM 425
Query: 288 VAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGW 347
+ + + L + + L I+ + + +E G+
Sbjct: 426 LNMGKYERQHYVGVNPNLRDVEKQK--------QLEQKEADF-IN-LILRAYKAEKVEGF 475
Query: 348 NFWYFEKLGELHSI 361
+ +K G L +I
Sbjct: 476 KTFIGKKTGRLVAI 489
>gi|163846243|ref|YP_001634287.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222523998|ref|YP_002568468.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163667532|gb|ABY33898.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222447877|gb|ACM52143.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
Length = 337
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 43/271 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G++I+ L L +SVD+IFADPPYN++ WD F S AY
Sbjct: 64 IWIGDAIAWLRSLETESVDMIFADPPYNIRKA----------------EWDSFESQAAYV 107
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
++ W+ RVLKP GTL++ G I + I K+ G
Sbjct: 108 EWSLEWISEAARVLKPTGTLYICGFSEIIADLKLPASRFFKGCRWLIWHYKNKA---NLG 164
Query: 143 RRFQNAHETLIWASPS---------------PKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ + +HE+++ Y + A + + R P
Sbjct: 165 KDWGRSHESILHFRKDRQFTFNIDDIRIPYGHHTLKYPDHPQAETSQYSRGRRRQAVWRP 224
Query: 188 ICSGSE---------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
G++ + HPTQKPE LL +++++S+ GD+I+DPF GSGT+
Sbjct: 225 HPRGAKPRDVLEIPTTCNGMHEKTPHPTQKPEELLRKLVLASSNVGDVIVDPFLGSGTTA 284
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
VA++L+R + G ++ +Y A +RI V+
Sbjct: 285 VVAEQLKRRWKGCDISLEYCQWAVQRIELVE 315
>gi|315655187|ref|ZP_07908088.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
gi|315490442|gb|EFU80066.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
Length = 291
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/289 (24%), Positives = 113/289 (39%), Gaps = 39/289 (13%)
Query: 14 NSIFEWK----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------- 53
SI W + ++ G+++ VLE+LP +S LI+ DPP+N
Sbjct: 1 MSINSWNSTGPNLVVAGDNLPVLEQLPDESFQLIYIDPPFNTGKVQSRQSLKTVRTDAPV 60
Query: 54 -------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
GQ Y V A D SF Y F L R+L P GTL++
Sbjct: 61 TGSRVGFQGQTYETVRGKVTAYND------SFSDYWGFLEPRLEQVWRLLAPTGTLYLHL 114
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-- 164
Y + +L L + R++ H+ ++ + +
Sbjct: 115 DYREVHYAKVLLDALFGRDCFLNEIIWAYDYGGRSKRKWPAKHDNILVYVKDQERYYFDS 174
Query: 165 ----TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
Y A + R + + + + TQKPE +L RI+ +S
Sbjct: 175 ESVDREPYMAPGLVTPEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQAS 234
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++PGD +LD F GSGT+GAVA L R F+ I+ + I+I +R++
Sbjct: 235 SRPGDWVLDFFAGSGTTGAVAGTLERRFVLIDENPEAIEIMRRRLSRAN 283
>gi|240047330|ref|YP_002960718.1| Modification methylase HpaI [Mycoplasma conjunctivae HRC/581]
gi|239984902|emb|CAT04895.1| Modification methylase HpaI [Mycoplasma conjunctivae]
Length = 299
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/283 (24%), Positives = 128/283 (45%), Gaps = 24/283 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII GN+I L+K+ +KS++LI DPPYNL + + + FE Y
Sbjct: 6 KIICGNAIEELKKIESKSINLIVTDPPYNLNKDYGNNKDNLK--------------FEEY 51
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F+R WL +R+LK +GT+++ I I ++L+ N + +
Sbjct: 52 LEFSRQWLTEAKRILKDDGTIYIFMGTRYISYIYSILEKELNMHFNSWITWFYTQGIG-K 110
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN---- 197
+ F H+ ++ + +TFN D ++ + + ++ + +
Sbjct: 111 TKGFSPRHDDILMFTKHK--SKFTFNLDDIRVPQKFYRSVNNMRGANPGNVWQFSHMHYC 168
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K HPTQKPE L R+++ S+ D +LDPF GSGT V ++ R IGI++ ++Y
Sbjct: 169 NKNRKKHPTQKPEGLYERMILVSSNENDTVLDPFVGSGTMLRVCQQTNRRGIGIDINEEY 228
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
+ + +R+ + E + + P + ++ + I+
Sbjct: 229 VRMCKERLEEDFTGFDSEDERI---KRVPNDLNDPIIRKEYIE 268
>gi|332073769|gb|EGI84247.1| DNA methylase family protein [Streptococcus pneumoniae GA41301]
Length = 325
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSIRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTIYKVDNNGDY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|312869218|ref|ZP_07729390.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
gi|311095239|gb|EFQ53511.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
Length = 256
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 84/247 (34%), Positives = 133/247 (53%), Gaps = 9/247 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ + ++++P +VD+I ADPPY L +G V WDK S + +
Sbjct: 11 LYQDDAFNFMKRIPNNAVDVIVADPPYFLSNDG-FSNSGGKFVSVNKGKWDKLPS-KDIE 68
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F L +R+L NGT W+ GS HNI+ IG +L +F ILN+I W+KSNP PN
Sbjct: 69 KFYAEMLSQFQRILNKNGTAWIFGSMHNIYVIGYLLNRYDFKILNNITWQKSNPAPNLSR 128
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R F ++ ET++W K FNYD ++ N + QM+ W + +++
Sbjct: 129 RMFTHSTETILWIKK--KDGKQFFNYDLMRKLNGNKQMKDVWTTATIN-----KSEKRFG 181
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP +++ RI+ +ST G I+LDPF G+GT+ K +G++ Y++IA
Sbjct: 182 NHPTQKPLSIIMRIIKASTTDGMIVLDPFIGAGTTAVAGKLCGVKVVGVDNSAGYLNIAV 241
Query: 263 KRIASVQ 269
+R+ Q
Sbjct: 242 QRLKDYQ 248
>gi|149019387|ref|ZP_01834749.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
SP23-BS72]
gi|147931257|gb|EDK82236.1| nicotinate phosphoribosyltransferase [Streptococcus pneumoniae
SP23-BS72]
Length = 332
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|149002824|ref|ZP_01827750.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP14-BS69]
gi|147759118|gb|EDK66112.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP14-BS69]
Length = 325
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 31/283 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+++ +L+ + + S+DLI+ DPP+ Q +L + + D+W +S E Y
Sbjct: 2 TVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNIMYS-FEDTW---TSIEDY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L C+RVLK +G+++V I +L N+ + + +
Sbjct: 58 KEFLSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNS 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------------ 177
+ N H+ + + S S K T + N D
Sbjct: 118 KKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRDGNSKTIYKVDNNGNY 177
Query: 178 ---VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ L + + +PTQKP LL +I+ +T DI+LDPF GS
Sbjct: 178 ILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GT+ +K L R+++GI++ ++ I+I +R+ +V + L
Sbjct: 238 GTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLN 280
>gi|87306976|ref|ZP_01089122.1| adenine-specific methyltransferase [Blastopirellula marina DSM
3645]
gi|87290349|gb|EAQ82237.1| adenine-specific methyltransferase [Blastopirellula marina DSM
3645]
Length = 309
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 79/303 (26%), Positives = 115/303 (37%), Gaps = 43/303 (14%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
DK+ + I + KLP SVDL+FADPP+N+ +Y D S +
Sbjct: 6 LDKLKNVDCIQGMSKLPDGSVDLVFADPPFNIGFKYDVY--------------DDRRSAD 51
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
Y ++RAW+ RVLK +G+ W+ IG ++L N +VW + M
Sbjct: 52 EYLEWSRAWMEQVARVLKSDGSFWLAIGDDFAAELKVLATRDLGMHCRNWVVWYYTFGMH 111
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFN-----------------------YDALKAAN 175
F +H L + P+ + D
Sbjct: 112 CKAK--FTRSHTHLFYFVKDPENFTFNDMSVRVPSARMLVYGDRRANPKGRLPDDTWVLR 169
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFG 233
S R+ E+ H Q PE LL RI+ S+ G+ +LDPF G
Sbjct: 170 PQDIPESFQAEEDTWHFPRVAGTFKERAGFHGCQMPEQLLGRIIKVSSSEGETVLDPFAG 229
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
SG++ VAKKL R +G EM +Y A RI VQ + + + P A
Sbjct: 230 SGSTLVVAKKLGRRHLGFEMSPEYAAAAQARIDEVQSGDPLTGSPEPSM-SAPSTANGRH 288
Query: 294 VER 296
V+
Sbjct: 289 VKD 291
>gi|254304047|ref|ZP_04971405.1| site-specific DNA-methyltransferase (adenine-specific)
[Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
gi|148324239|gb|EDK89489.1| site-specific DNA-methyltransferase (adenine-specific)
[Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
Length = 297
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 75/305 (24%), Positives = 129/305 (42%), Gaps = 25/305 (8%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K EN + + + I GN + +L+++ SVDLIFADPPY + +
Sbjct: 2 KEFFKNIENYSYVSNDNNIAILGNCLDILKEIKDNSVDLIFADPPYGIGKDFG------- 54
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ D F + Y + + W+ C RVLK +GT++ + S + + + + F
Sbjct: 55 ------NKTDFFKNKYEYFEWAKKWIDECMRVLKKDGTMYFMTSTQFMSILDNYVDDKYF 108
Query: 124 WILNDIVWRKSNPMPNFRGRRFQN------AHETLIWASPSPKAKGYTFNYDALKAANED 177
I + S+ + H + + + + + +
Sbjct: 109 IISRIVWCYDSSGVQAKSKFGSLYEPILMITHNDKVKYKFNYEDIMVEAITGSKRNLIDY 168
Query: 178 V-----QMRSDWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ + R+R + E + HPTQKPE LL RI+++S+ GD++LDPF
Sbjct: 169 RKKIPAPYSNLKVPGNVWTFNRVRFRMEEYENHPTQKPEELLMRIILASSNKGDVVLDPF 228
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
GS T+ VA KL R IGIE+ +Y I +R + N +L K+T + +
Sbjct: 229 SGSFTTSNVALKLDRKAIGIEINPEYFKIGIRRTKLSEYFENEKLEKQKIKKTNNKSKKD 288
Query: 292 LLVER 296
+V+
Sbjct: 289 HVVKN 293
>gi|320159894|ref|YP_004173118.1| methyltransferase [Anaerolinea thermophila UNI-1]
gi|319993747|dbj|BAJ62518.1| methyltransferase [Anaerolinea thermophila UNI-1]
Length = 391
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 78/277 (28%), Positives = 114/277 (41%), Gaps = 27/277 (9%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
+Q N+ + NQ E ++I G+S+ VL+K+P S+DLIF PPYN L + R D
Sbjct: 130 AQDNNFSKISNQ-LPPEMTNQIFCGDSLEVLKKIPDNSIDLIFTSPPYNFGLEYE--RQD 186
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGT 116
+ WD Y A C RVLK G + V Y + +
Sbjct: 187 DAH------KWD------LYFEKLFAIFDECIRVLKFGGRIAVNIQPLFSDYIPSHHLIS 234
Query: 117 MLQNLNFWILNDIVWRKSN---PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
I + + N G ++ L + + +
Sbjct: 235 NFFISRRMIWKGEILWEKNNYNCKYTAWGSWKSPSNPYLKYTWEFIEIFAKGTLKKSGDP 294
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPF 231
N D+ SD + + K HP PE L R++ + GDI+LDPF
Sbjct: 295 KNADI--TSDEFKEWVVAKWSIAPERKMKEFGHPAMFPEKLAERVIKLFSFVGDIVLDPF 352
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
G GT+ AVA+KL R FIGI++ Q+Y DIA KR+ +
Sbjct: 353 NGVGTTTAVAQKLGRKFIGIDISQEYCDIAQKRLKNT 389
>gi|319410295|emb|CBY90637.1| putative type II restriction methyltransferase [Neisseria
meningitidis WUE 2594]
Length = 285
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 37/298 (12%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
I N+NS +I G+ + VL+ LP+ SVDLIFADPPY + +
Sbjct: 2 KKFEIQFNKNS------TVILGDCLEVLKTLPSSSVDLIFADPPYGIGKDFG-------- 47
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
++ D F+ Y + +W+ C RVLK NGT++++ S + + + F
Sbjct: 48 -----NNKDFFADAYQYLDWCASWIDECMRVLKDNGTMYLMSSVQYMPILDRYVDEKYFI 102
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA-------------- 170
I + + + +F + +E ++ + + YTFN +
Sbjct: 103 I--NRIVWSYDSSGVQAKNKFGSTYEPILMFTHHKNS-KYTFNSEDILIEAKTGAERKLI 159
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ + R+R K D + HPTQKPE LL RI+++S+ GD ILD
Sbjct: 160 DYRKTPPQPYNAKKIPSNVWEFNRVRYKMDEYENHPTQKPEKLLERIILASSNKGDTILD 219
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
PF GS T+ +VA +L+R IGIE+ DY I +R LT ++T +
Sbjct: 220 PFSGSFTTSSVAVRLKRKAIGIEINPDYFKIGIRRTHISNEYNGEFLTKNKMRKTSNK 277
>gi|255066897|ref|ZP_05318752.1| DNA (cytosine-5-)-methyltransferase [Neisseria sicca ATCC 29256]
gi|255048972|gb|EET44436.1| DNA (cytosine-5-)-methyltransferase [Neisseria sicca ATCC 29256]
Length = 285
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 28/279 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
KI + + L + SVDLIFADPPYN+ DSW
Sbjct: 5 ENSMTKIYLADCLDALNDIQDNSVDLIFADPPYNIGK----------KFSQFKDSW---K 51
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + Y + WL C LK NG+L+V+ S ++ I L+ + I S+
Sbjct: 52 TEKEYIEWCYKWLSLCLNKLKDNGSLYVMASTQSMPYIDIWLRERMTILSRIIWHYDSSG 111
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + + +E +++A + K+ + + ++A + D+ I + + +
Sbjct: 112 V--QAKKYYGSLYEPILFAVKNNKSYTFNSSDIEIEAKTGAKRKLIDYRKEIPTPYKTTK 169
Query: 197 -------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ + HP+QKPEALL RI+ +ST GD++LDPF G+ ++ AVA+K
Sbjct: 170 VPGNTWYFPRVRYRMEEYENHPSQKPEALLERIIRASTNEGDLVLDPFGGTFSTSAVAQK 229
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
L R I IE +++Y+ I +R+ +L
Sbjct: 230 LNRKSISIEFQEEYLKIGLRRLGIATEYRGEKLCNTDKN 268
>gi|126175812|ref|YP_001051961.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella baltica
OS155]
gi|125999017|gb|ABN63092.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica OS155]
Length = 296
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/291 (24%), Positives = 118/291 (40%), Gaps = 53/291 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI G+S++ L+ LP S+D I PPY Q + + S E
Sbjct: 8 NKIFTGDSLASLKALPKNSIDCIVTSPPYYGQRDY-----------GMDGQIGNESKLEE 56
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFWILNDIVWR 132
Y C+RVLK +G+LW+ +R+ LQ+ + + NDI+W
Sbjct: 57 YIENLVNIFNECKRVLKDSGSLWLNLGDKYNKGNLMGMPWRVALALQDEGWILRNDIIWH 116
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDWLIPICS 190
K N MP+ R HE + + + K Y + + K +ED +M+ +
Sbjct: 117 KPNAMPHSAKNRLTTDHEYIFFFTKKAKDYYYDQDAIREEHKTFSEDSKMKGGRNHFGKN 176
Query: 191 GSERLRNKDG--------------------------------EKLHPTQKPEALLSRILV 218
G + K+ H PE L+ ++
Sbjct: 177 GGTPEKGKNSGNSNLHDGRWDQAFHPNGRNKRTVWNVPLSKFRGAHFAVFPERLIEPCIL 236
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ I+LDPFFG+GT+G VA + R ++G+E+ +Y +IA R+ +VQ
Sbjct: 237 AGCPKNGIVLDPFFGAGTTGFVAAQQGRKYVGLELNPEYAEIAENRLKTVQ 287
>gi|22299025|ref|NP_682272.1| adenine specific DNA methylase [Thermosynechococcus elongatus BP-1]
gi|22295207|dbj|BAC09034.1| Adenine specific DNA methylase [Thermosynechococcus elongatus BP-1]
Length = 385
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/308 (20%), Positives = 122/308 (39%), Gaps = 45/308 (14%)
Query: 17 FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN----------GQLYRPDHS 63
++++ +I G++ V+ L +DLI+ DPP+++ + G+ + + S
Sbjct: 79 DDFRNMLIWGDNKLVMAALLEQFRGKIDLIYIDPPFDVGADFTMQVQIGEEGEAVQKEQS 138
Query: 64 LVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+++A D+W K + +Y L R +L G+++V + + +L +
Sbjct: 139 ILEAVAYRDTWGKGTD--SYLHMMYERLTLMRELLSERGSIYVHCDWRMNAFLRQVLDDI 196
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS---------PKAKGYT------ 165
+ + F H+ ++ + S K+ T
Sbjct: 197 FGRDRFLNHIIWAYKTGGIPENVGFSKKHDDILIYTKSDTPVFNQLLQKSYVPTLPEPTT 256
Query: 166 -----------FNYDALKAANEDVQMRSDWLIPICSGSERL-RNKDGEKLHPTQKPEALL 213
+ + R+ + + + + RN TQKPEALL
Sbjct: 257 ISGKQLGVQRDEVCELCGVGRPGQKYRNVIMRDVWDDIQSIFRNDQQTTGFDTQKPEALL 316
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
RI+ +S+ GD++ D F GSGT+ AVA+KL R +IG+++ + I KR+ VQ +
Sbjct: 317 ERIIKASSNEGDLVADFFCGSGTTLAVAEKLGRRWIGVDLGRYAIHTTRKRLIQVQRELH 376
Query: 274 IELTVLTG 281
Sbjct: 377 AADQPYRS 384
>gi|257076824|ref|ZP_05571185.1| hypothetical protein Faci_07171 [Ferroplasma acidarmanus fer1]
Length = 619
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 32/278 (11%)
Query: 17 FEWKDKIIKGNSISVLEKLPA----KSVDLIFADPPYNLQLN--GQLYRPDHSLVD---- 66
+WK+K+I G++ V+ L ++LI+ DPP+ + D + V+
Sbjct: 65 IDWKNKLIWGDNKLVMSSLLKQGWAGKINLIYIDPPFYTGADFSYTTQVNDDTEVEKEPS 124
Query: 67 -----AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
A D+W +Y + L R +L NG++++ + + + +
Sbjct: 125 VIEQRAYRDTW--SGGISSYLKYMYERLSIMRDLLADNGSIYIHLDWRVSHYVKIICDEI 182
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK--------------GYTFN 167
+ + H+T+++ + + + +
Sbjct: 183 FGINFMADI-VWHYHTGGVSKLNWGRKHDTILFYVKNKDSDFTFNLIKEKRYYEKPFFNS 241
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + + L +PTQKPEALL R++ +S+ GDI+
Sbjct: 242 TEGYQTDENGKIYVMAHPDDVWDIPAVLNVSSQFIGYPTQKPEALLERVIKASSNKGDIV 301
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
D F GSGT+ AVA+KL R +IG ++ + I ++ KR+
Sbjct: 302 ADFFCGSGTTLAVAEKLGRRWIGSDLSKYAIQVSRKRL 339
>gi|73541991|ref|YP_296511.1| DNA methylase N-4/N-6 [Ralstonia eutropha JMP134]
gi|72119404|gb|AAZ61667.1| DNA methylase N-4/N-6 [Ralstonia eutropha JMP134]
Length = 304
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 27/250 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + + + +LP SVDL+ ADPPY L + D L+ +AY
Sbjct: 30 QLFQEDMFEGIARLPDGSVDLVVADPPYGLGKDYG---NDSDLLSG-----------DAY 75
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ W+ A L P GTL++ ++ + ML+ ++N+I+W + P
Sbjct: 76 LEWSERWMDAVCPKLAPKGTLYLFCTWQYSPELFVMLKRR-LTMINEIIWDRRVPSMGGT 134
Query: 142 GRRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDVQMRSDWLIPICS 190
R++ + H+ + + + + T + + +
Sbjct: 135 TRKYSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEMGYNPKDLW 194
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
R+ +D E+ HPTQKP ++ R+++SS PG ++LDPF GSGT+ + R F
Sbjct: 195 SISRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 254
Query: 250 GIEMKQDYID 259
G E+ +Y++
Sbjct: 255 GFEINPEYVE 264
>gi|331703183|ref|YP_004399870.1| modification methylase [Mycoplasma mycoides subsp. capri LC str.
95010]
gi|328801738|emb|CBW53891.1| modification methylase [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 400
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/313 (21%), Positives = 114/313 (36%), Gaps = 31/313 (9%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ + I +++ + + L++L S+DL++ DPP+ Q L + D
Sbjct: 5 QKKGKIMIKLNQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY-FFND 63
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
W + Y F + L+ +RVLK G+++V I +L + I
Sbjct: 64 IW---KDLKEYQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEVFGSINFRSE 120
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIP 187
+ + ++H+ + S + K D N D ++ D
Sbjct: 121 IIWVYKRWSNSKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNK 180
Query: 188 ICSGSERLRNK------------------------DGEKLHPTQKPEALLSRILVSSTKP 223
++ N +PTQKP LL RI+ T
Sbjct: 181 TVYKKDKNNNIVFSDLKKGVPLSDVWNIPFLNPKAKERASYPTQKPIELLERIISLVTNE 240
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
D++LDPF GSGTS +K L R+FIG + D IDI +R+ + + L K
Sbjct: 241 NDVVLDPFVGSGTSVVASKLLNRNFIGFDNNIDAIDITNQRLKNPIKSESYLLKNGIDKY 300
Query: 284 TEPRVAFNLLVER 296
++ R
Sbjct: 301 DTKTKQQKQILSR 313
>gi|115358100|ref|YP_775238.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
ambifaria AMMD]
gi|115283388|gb|ABI88904.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria AMMD]
Length = 283
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 30/259 (11%)
Query: 28 SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + +LP S+DLI ADPPY L + + DK S + + A+
Sbjct: 37 NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFLAW 82
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
TR WL LKP+G++++ ++ I + L+ ++N+I+W + P RR
Sbjct: 83 TREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKTQ-LTMVNEIIWDRRVPSMGGTTRR 141
Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
F + H+ + + + T + K + +
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261
Query: 253 MKQDYIDIATKRIASVQPL 271
+ + Y IA +R+ ++
Sbjct: 262 INESYCAIAHERVNALAAQ 280
>gi|172062886|ref|YP_001810537.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|171995403|gb|ACB66321.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
MC40-6]
Length = 283
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 65/254 (25%), Positives = 113/254 (44%), Gaps = 30/254 (11%)
Query: 28 SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + +LP S+DLI ADPPY L + + DK S + + A+
Sbjct: 37 NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFLAW 82
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
TR WL LKP+G++++ ++ I + L+ ++N+I+W + P RR
Sbjct: 83 TREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKTQ-LTMVNEIIWDRRVPSMGGTTRR 141
Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
F + H+ + + + T + K + +
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261
Query: 253 MKQDYIDIATKRIA 266
+ + Y IA +R+
Sbjct: 262 INESYCAIAHERVN 275
>gi|328954101|ref|YP_004371435.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
gi|328454425|gb|AEB10254.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 616
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 77/390 (19%), Positives = 141/390 (36%), Gaps = 59/390 (15%)
Query: 17 FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA------ 67
++++ +I G++ L L +DLI+ DPP+++ + + +A
Sbjct: 74 DDFRNLLIWGDNKLALAALLEQFRGKIDLIYIDPPFDVGADFTMQVQLGGEGEALQKEQS 133
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
D+W K + +Y L+ + +L +G ++V + I +L ++
Sbjct: 134 ILEAVAYRDTWGKGTD--SYLHMMYERLVLMKDLLSESGNIFVHCDWRVNSYIRLLLDDI 191
Query: 122 NFWILNDIVWRKSNP-MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-------- 172
+ M + R F N H+T+ W P
Sbjct: 192 LSGDNHQNELIWIYSRMASKNQRNFNNTHQTIFWYRKGPGFTFNVDQVRTEYAESSKKRA 251
Query: 173 -AANEDVQMRSDWLIPICSGSERLRNKDG--------EKLHPTQKPEALLSRILVSSTKP 223
A + V +C E+ + D + T+KPE LL I+ +++
Sbjct: 252 GYAKKGVGSGLLKEGSVCELHEKGKFPDDWMSIPFERNATYQTEKPENLLDVIIKAASNE 311
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE-------- 275
GD++ D F GSGT+ AVA+KL R +IG+++ + I ++ KR+ VQ +
Sbjct: 312 GDLVADFFCGSGTTMAVAEKLGRRWIGVDLGRYAIHVSRKRLIQVQRELHTAGKPYRSFD 371
Query: 276 -------------LTVLTGKRTEPRVAFNLLVERGLI--QPGQILTNAQGNISATVCADG 320
L L G +E R + + P +L + V
Sbjct: 372 VYNLGRYERQWWQLDRLKGADSEHRRLVLQFYQAAPLDNPPHPLLHGKKHGAFVHVDQID 431
Query: 321 TLISGTELGSIHRVGAKVSGSE-TCNGWNF 349
++ + EL + G E C W F
Sbjct: 432 SIFAFDELKTAAEAARSAGGRELHCLAWEF 461
>gi|330820900|ref|YP_004349762.1| DNA modification methylase [Burkholderia gladioli BSR3]
gi|327372895|gb|AEA64250.1| DNA modification methylase [Burkholderia gladioli BSR3]
Length = 286
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 27/259 (10%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ ++ LP S+DLI ADPPY L + D + +A+ A+TR
Sbjct: 42 DFLTDAASLPDASIDLIVADPPYGLGKDYG---NDSDKLQG-----------DAHLAWTR 87
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
WL LKP+G+L+V ++ I + L+ ++N+I+W + P RRF
Sbjct: 88 QWLELAIPKLKPSGSLYVFCTWQYAPEIFSFLKTR-LTMINEIIWDRRVPSMGGTTRRFT 146
Query: 147 NAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ H+ + + + S T + K + + RL
Sbjct: 147 SVHDNIGFFAVSKGYYFDLDPVRIPYDAETKKARSRKLFEGSKWLEMGYNPKDVWSVSRL 206
Query: 196 RNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ E++ HPTQKP L+ R+++SS PG ++LDPF GSGT+ + + R FIG E+
Sbjct: 207 HRQHAERVDHPTQKPLELVERMVLSSCPPGGVVLDPFMGSGTTAVASARHGRRFIGYEIN 266
Query: 255 QDYIDIATKRIASVQPLGN 273
+ Y IA +R+ ++ +
Sbjct: 267 ESYCAIARERVTALAAPAD 285
>gi|283457686|ref|YP_003362271.1| adenine specific DNA methylase Mod [Rothia mucilaginosa DY-18]
gi|283133686|dbj|BAI64451.1| adenine specific DNA methylase Mod [Rothia mucilaginosa DY-18]
Length = 423
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 58/280 (20%), Positives = 110/280 (39%), Gaps = 20/280 (7%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--------RPDHSLVDAVTDSW- 72
+++ +++ L +LP + +I+ DPP+N + D + + S
Sbjct: 33 LLVQADNLEYLRELPDGAFTVIYIDPPFNTGKKQTRRTLSAEASEKGDRTGFKGKSYSST 92
Query: 73 -----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
SFE Y AF + R+L +GTL++ + + + M +
Sbjct: 93 LQTLASYNDSFEDYWAFLAPRIEQAHRLLAQDGTLYLHLDWREVHYVKIMCDMIFGRENF 152
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQMR 181
+ RR+ H+ ++ + ++ + Y A E+ R
Sbjct: 153 INELIWAYDYGAKSTRRWPTKHDNILVYAKDHRSYYFNTAEVDREPYMAPGLVTEEKASR 212
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ + + +PTQKP LL R++ +S++PGD +LD F GSG++GA A
Sbjct: 213 GKLPTDVWWHTIVSPTGKEKTGYPTQKPTGLLRRMIAASSRPGDWVLDFFAGSGSTGAAA 272
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
+L R F+ ++ I++ KR+ V G
Sbjct: 273 AQLGRKFVCVDQNPPAIEVMAKRLGVDPVSFAEYRGVPRG 312
>gi|86169484|gb|ABC86981.1| MseI methylase [Micrococcus sp. NEB 446]
Length = 300
Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 54/281 (19%), Positives = 105/281 (37%), Gaps = 20/281 (7%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN------GQLYRPDHSLVDAVTDSWDK 74
D I++ +++ ++ LP S +I+ DPP+N S V ++D
Sbjct: 13 DLIVEADNLDFIQTLPDASFRMIYIDPPFNTGRTQRLQSLKTTRSVTGSRVGFKGQTYDT 72
Query: 75 FSS--------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
S F Y +F LL R+L P+G L++ Y + +L +
Sbjct: 73 VKSTLHSYDDAFTDYWSFLEPRLLEAWRLLTPDGALYLHLDYREVHYAKVVLDAMFGRES 132
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQM 180
+ ++ H+ ++ P + Y A +
Sbjct: 133 FLNELIWAYDYGARSKSKWPTKHDNILVYVKDPNNYVWNGQDVDREPYMAPGLVTPEKVA 192
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + + TQKP ++ R++ +S+ GD +LD F GSGT+GA
Sbjct: 193 LGKLPTDVWWHTIVPPASKERTGYATQKPVGIIRRMIQASSNEGDWVLDFFAGSGTTGAA 252
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
A++L R F+ +++ + I + KR+ ++ +
Sbjct: 253 ARQLGRRFVLVDVNPEAIAVMAKRLDDGALDTSVTIVQTPQ 293
>gi|322434539|ref|YP_004216751.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
gi|321162266|gb|ADW67971.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
Length = 303
Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 22/272 (8%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAV--- 68
++I+ G +++VL+ LPA S DLI+ DPP+N R D +
Sbjct: 1 MNRIVLGENLAVLKTLPAHSADLIYIDPPFNTGKTQFRRRMKTVTDAEGDRTGFGGRRFR 60
Query: 69 TDSWDKF-----SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
T+ D SF+ Y F R ++ RR+L P G+L++ + ML +
Sbjct: 61 TEILDDGLAGYLDSFDDYIGFLRPRMIEARRILTPTGSLFLHVDPREVHYCKVMLDEVFG 120
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANED 177
+ +R+ H+ L+W + PK + N Y A +
Sbjct: 121 RPCFQNEIIWAYDYGARTSKRWPAKHDNLLWYTRDPKRFTFDLNATDRIPYMAPRLVGAA 180
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
R + + + + TQKP +L RI+ ++PGD +LD F GSGT+
Sbjct: 181 KTARGKTPTDVWWHTIVSPTGKEKTGYATQKPVNMLERIVRVHSRPGDRVLDFFAGSGTT 240
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
G A++ RSF+ I+ + I + KR+
Sbjct: 241 GEAAQRNDRSFLLIDQSPEAIKVMEKRLNLKA 272
>gi|237749758|ref|ZP_04580238.1| DNA methylase [Helicobacter bilis ATCC 43879]
gi|229374623|gb|EEO25014.1| DNA methylase [Helicobacter bilis ATCC 43879]
Length = 284
Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 97/252 (38%), Positives = 140/252 (55%), Gaps = 8/252 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +G+ ++L ++ +S D+IFADPPY L +G L +V WD+ + + D
Sbjct: 21 LYQGDCNALLPQM-KESFDVIFADPPYFLSNDG-LSIQSGKIVSVNKGEWDRGENIDEID 78
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F W+ + LKP G++ + G+YHNIF +G LQ L+F ILN I W+K+NP PNF
Sbjct: 79 RFNMEWIANAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSC 138
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 139 RYLTHSTEQIIWARKSHK-YKHIFNYEILKKLNNDKQMRDVWSFPAIAPWEKTFGK---- 193
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP ALL R+L+ ++ II DPF GS T+G A L R F+GIE + +I+++
Sbjct: 194 -HPTQKPLALLVRLLLMASNDDSIICDPFSGSSTTGIAANLLGRQFVGIERESSFINLSI 252
Query: 263 KRIASVQPLGNI 274
KR +
Sbjct: 253 KRKNELDSKCKE 264
>gi|206562848|ref|YP_002233611.1| putative DNA methylase [Burkholderia cenocepacia J2315]
gi|198038888|emb|CAR54850.1| putative DNA methylase [Burkholderia cenocepacia J2315]
Length = 283
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 27/261 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ LP S+DLI ADPPY L + + DK S + +
Sbjct: 35 LHNRDFLTHAAHLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LKP+G++++ ++ I + L+ ++N+I+W + P
Sbjct: 81 AWTREWLDLAIPKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 139
Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + T + K + +
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259
Query: 251 IEMKQDYIDIATKRIASVQPL 271
E+ + Y IA +R++++
Sbjct: 260 YEINESYCAIAHERVSALAAP 280
>gi|78062971|ref|YP_372879.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
gi|77970856|gb|ABB12235.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
Length = 283
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 27/261 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ LP S+DLI ADPPY L + + DK S + +
Sbjct: 35 LHNRDFLTHAAHLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LKP+G++++ ++ I + L+ ++N+I+W + P
Sbjct: 81 AWTREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKTQ-LTMVNEIIWDRRVPSMGGTT 139
Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + T + K + +
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259
Query: 251 IEMKQDYIDIATKRIASVQPL 271
E+ + Y IA +R+ ++
Sbjct: 260 YEINESYCAIAHERVNALAAP 280
>gi|209527763|ref|ZP_03276257.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|209491796|gb|EDZ92157.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 397
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 65/300 (21%), Positives = 115/300 (38%), Gaps = 31/300 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ ++++ S+DLI+ DPP+ Q +L D + D W SS + Y
Sbjct: 4 LVYQGDCLNIISTWEKDSIDLIYLDPPFFSQKTHKLTTRDSRKEFSFQDLW---SSHQEY 60
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F L R+L P+G+++V H I +L ++ + +
Sbjct: 61 GNFIYQRLQEMWRILSPSGSIFVHCDRHASHLIRLLLDDVFSPQMFRSEIIWHYKRWSNS 120
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-------------------- 181
+ AH+T+ + + S + + N D ++
Sbjct: 121 QKALLPAHQTIFYYTKSDDYTFNFIYGEYSETTNVDQILQRRKRDEYGKSIYDKDLDGNI 180
Query: 182 -------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
L + +PTQKP LL +I+ +T GD+ILDPF GS
Sbjct: 181 IPSGGKKGVPLSDVWEIPYLNPKAKERVGYPTQKPLLLLEQIIKIATNEGDLILDPFCGS 240
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV-LTGKRTEPRVAFNLL 293
GT+ A L R+ +GI++ D +++ KR++ + LT + LL
Sbjct: 241 GTTLVAASLLGRNSVGIDISTDAVELTKKRLSDPIKTNSNLLTKGRDSYKNVDESVLGLL 300
>gi|161521164|ref|YP_001584591.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189352659|ref|YP_001948286.1| putative adenine-specific DNA-methyltransferase [Burkholderia
multivorans ATCC 17616]
gi|221212473|ref|ZP_03585450.1| DNA modification methylase RsrI [Burkholderia multivorans CGD1]
gi|28971665|dbj|BAC65265.1| probable DNA-methyltransferasee [Burkholderia multivorans]
gi|160345214|gb|ABX18299.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
17616]
gi|189336681|dbj|BAG45750.1| putative adenine-specific DNA-methyltransferase [Burkholderia
multivorans ATCC 17616]
gi|221167572|gb|EEE00042.1| DNA modification methylase RsrI [Burkholderia multivorans CGD1]
Length = 283
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 27/261 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ +LP S+DLI ADPPY L + + DK S +A+
Sbjct: 35 LHNRDFLTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDAFL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+TR WL LKP+G+++V ++ I + L+ ++N+I+W + P
Sbjct: 81 EWTREWLELAIPKLKPSGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTT 139
Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + T + K + +
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259
Query: 251 IEMKQDYIDIATKRIASVQPL 271
E+ + Y IA +R+ ++
Sbjct: 260 YEINESYCAIARERVHALAAQ 280
>gi|322378612|ref|ZP_08053050.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
gi|322380096|ref|ZP_08054350.1| type I restriction enzyme M [Helicobacter suis HS5]
gi|321147466|gb|EFX42112.1| type I restriction enzyme M [Helicobacter suis HS5]
gi|321148972|gb|EFX43434.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
Length = 274
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 8/265 (3%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++K + + +L +P + DLIFADPPY L NG L +V SWD+
Sbjct: 12 EDFKFTLYHNDCKEILAHMP-ECFDLIFADPPYFLSNNG-LTIESGQIVSVNKGSWDRLE 69
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ AF WL + LKP+G++ + + HN+F +G LQ L F +LN I W KSNP
Sbjct: 70 GIDQIHAFNLEWLRLAKEALKPSGSILISATQHNLFSLGLALQTLGFKLLNTITWHKSNP 129
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
PNF R +A E ++WA SPK + FNY+ +KA N+ QMR W +P + E+
Sbjct: 130 PPNFSCRTLVHASEQILWARKSPK-HAHIFNYERMKALNQGKQMRDVWTLPSIASFEKKC 188
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPTQKP LL R+L+ ++ +I DPF GS ++G A L RSF+G+E +QD
Sbjct: 189 GK-----HPTQKPLNLLLRLLLMASNKESLIGDPFSGSSSTGIAANLLGRSFVGMEKEQD 243
Query: 257 YIDIATKRIASVQPLGNIELTVLTG 281
+I ++ KR ++ ++
Sbjct: 244 FIKLSIKRRQELEVHLEDFKKLVQK 268
>gi|237753354|ref|ZP_04583834.1| DNA methylase [Helicobacter winghamensis ATCC BAA-430]
gi|229375621|gb|EEO25712.1| DNA methylase [Helicobacter winghamensis ATCC BAA-430]
Length = 284
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 99/242 (40%), Positives = 138/242 (57%), Gaps = 8/242 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +G+ ++L ++ +S D+IFADPPY L G L +V WD+ + + D
Sbjct: 21 LYQGDCNALLPQM-KESFDVIFADPPYFLSNGG-LSIQSGKIVSVNKGEWDRGENIDEID 78
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F W+ + LKP G++ + G+YHNIF +G LQ L+F ILN I W+K+NP PNF
Sbjct: 79 RFNTEWIANAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSC 138
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 139 RYLTHSTEQIIWARKSHK-HKHIFNYEILKKLNNDKQMRDVWSFPAIAPWEKTFGK---- 193
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP ALL R+L+ ++ II DPF GS T+G A L R FIGIE + +ID++
Sbjct: 194 -HPTQKPLALLVRLLLMASNEDSIICDPFSGSSTTGIAANLLHRQFIGIERESSFIDLSI 252
Query: 263 KR 264
KR
Sbjct: 253 KR 254
>gi|206975209|ref|ZP_03236123.1| DNA methylase [Bacillus cereus H3081.97]
gi|206746630|gb|EDZ58023.1| DNA methylase [Bacillus cereus H3081.97]
Length = 240
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/257 (26%), Positives = 119/257 (46%), Gaps = 24/257 (9%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS------W 72
++ + + I ++K+ +DLI DPPYNL G R + + + ++ W
Sbjct: 2 IENILYNDDCIKSMKKIETNKIDLIVTDPPYNL---GNFMRNRDTNLKKMRENFFATAGW 58
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D F+ + ++ RV+K G++ V + + + ++ + F+ +W
Sbjct: 59 DDME-FDEWKDSMDSFFEESARVMKKGGSMIVFMAIIKVETLISLAEKHGFYYKTTGIWH 117
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K+NPMP F N+ E ++ T+ NE + S +
Sbjct: 118 KTNPMPRNMNLHFVNSTEAWVYF---------TYKTRTGTFNNEGALFHDFIETSLTSST 168
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
E+ K HPTQKPE+L+ + + D +LDPF GSGT+G V K+L R+FIG+E
Sbjct: 169 EKKYGK-----HPTQKPESLIKHFVELLSNANDWVLDPFMGSGTTGVVTKRLSRNFIGVE 223
Query: 253 MKQDYIDIATKRIASVQ 269
+ Q+Y +IA RI ++
Sbjct: 224 LDQEYFNIAQSRIEEIE 240
>gi|167840376|ref|ZP_02467060.1| DNA modification methylase RsrI [Burkholderia thailandensis MSMB43]
Length = 286
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 27/259 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI ADPPY L + + DK S + +
Sbjct: 35 LHNRDFLHDAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LKP G+++V ++ I + L+ ++N+I+W + P
Sbjct: 81 AWTREWLELAIPKLKPTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 139
Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + S T + K + +
Sbjct: 140 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 259
Query: 251 IEMKQDYIDIATKRIASVQ 269
E+ + Y IA +R+AS+
Sbjct: 260 YEINESYCAIARERVASLA 278
>gi|42560738|ref|NP_975189.1| DNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|42492234|emb|CAE76831.1| DNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
Length = 662
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/313 (21%), Positives = 114/313 (36%), Gaps = 31/313 (9%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ + I +++ + + L++L S+DL++ DPP+ Q L + D
Sbjct: 5 QKKGKIMIKLNQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY-FFND 63
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
W + Y F + L+ +RVLK G+++V I +L + I
Sbjct: 64 IW---KDLKEYQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEIFGSINFRSE 120
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--------- 181
+ + ++H+ + S + K D N D ++
Sbjct: 121 IIWVYKRWSNSKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNK 180
Query: 182 ------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
L + + +PTQKP LL RI+ T
Sbjct: 181 IVYKKDKNNNVVFSDLKKGVPLSDVWNIPFLNPKAKERTSYPTQKPIELLERIISLVTNE 240
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
D++LDPF GSGTS +K L R+FIG ++ D IDI +R+ + + L K
Sbjct: 241 NDVVLDPFVGSGTSVVASKLLNRNFIGFDINIDAIDITNQRLKNPIKSESNLLKNGIDKY 300
Query: 284 TEPRVAFNLLVER 296
++ R
Sbjct: 301 DTKTKQQKQILSR 313
>gi|291571854|dbj|BAI94126.1| type II DNA modification methyltransferase [Arthrospira platensis
NIES-39]
Length = 295
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 79/311 (25%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 18 EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + + G++I +L + A SV+LIF DPPYN+ + D+++
Sbjct: 7 DDRHTLFHGDAIQILSSQIAANSVNLIFVDPPYNIGKKFSNFH-------------DQWN 53
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E Y ++ WL C RVLKPNGTL+V+ S ++ L+ + + +
Sbjct: 54 SEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQKMSILSR--IVWHYDS 111
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY------------------TFNYDALKAANEDV 178
+ F + +E ++ K + + N +
Sbjct: 112 SGVQAKKYFGSMYEPILHCVKDQKNYIFNSADIKVEAQTGAQRKLIDYRKPVPTQYNSEK 171
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ W P R R + E HP QKPE+LL RI+++ST D++LDPF G+ T+
Sbjct: 172 VPGNVWYFPRV----RYRMAEYEN-HPAQKPESLLERIILASTNKHDLVLDPFAGTFTTA 226
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
AVAK+L R + IE +++Y+ I +R+ Q +L + +T+ +
Sbjct: 227 AVAKRLGRFSLSIESQEEYLKIGLRRVLGWQEYQGEKLLPPSKNQTKKNTNC---PQNQF 283
Query: 299 IQPGQILTNAQ 309
IQP + +A
Sbjct: 284 IQPS--IFDAD 292
>gi|28493738|ref|NP_787899.1| DNA modification methyltransferase [Tropheryma whipplei str. Twist]
gi|28572924|ref|NP_789704.1| DNA methylase [Tropheryma whipplei TW08/27]
gi|28411057|emb|CAD67442.1| putative DNA methylase [Tropheryma whipplei TW08/27]
gi|28476780|gb|AAO44868.1| DNA modification methyltransferase [Tropheryma whipplei str. Twist]
Length = 293
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 66/267 (24%), Positives = 108/267 (40%), Gaps = 20/267 (7%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----GQLYRPDHSLVDAVTDSWDKF 75
+ +++GN+I L KLP S LI+ DPP+N ++ R + + K
Sbjct: 14 NLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPYGEQIGFCGNRYKI 73
Query: 76 SS---------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
S F+ Y F + L R+LKP G ++ Y + +L ++
Sbjct: 74 LSESRTEYADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHYAKILLDSIFGRDS 133
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQM 180
+ RR+ H+ ++ + P+ + Y A D
Sbjct: 134 FINEIIWAYDYGAKTKRRWPAKHDNILVYAKDPRKYLFDSENVDREPYMAPGLVTPDKAK 193
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
R + + + +PTQKPE +L RI+ +S++P D +LD F GSGT+G V
Sbjct: 194 RGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWVLDFFAGSGTTGIV 253
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
A KL R F+ I+ + I RI
Sbjct: 254 AGKLGRKFVLIDNSPQAVKIMKLRIDR 280
>gi|51891472|ref|YP_074163.1| DNA modification methylase M.SthI [Symbiobacterium thermophilum IAM
14863]
gi|51855161|dbj|BAD39319.1| DNA modification methylase M.SthI [Symbiobacterium thermophilum IAM
14863]
Length = 289
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/281 (24%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I++G++ L+++P S+ + PPY + + S Y
Sbjct: 18 LILEGDARLALQRIPDNSIQCVVTSPPYWSLRDY-----------GIEGQIGLEDSVYQY 66
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
+ RRVLKP+GTLW+ IG +
Sbjct: 67 INTLVSVFREVRRVLKPDGTLWLNIGDSYTSGGRTWRAPDKKNQARAMSIRPDTPEGLKP 126
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+R+ LQ +++ +DI+W K N MP R +HE + S ++ Y
Sbjct: 127 KDLIGVPWRLAFALQQDGWYLRSDIIWHKPNAMPESVKDRPTRSHEYIFLFSK---SERY 183
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
++Y A++ N RS W + + ++ H P L+ +++ +KPG
Sbjct: 184 YYDYQAIREEN-GRNRRSVWH---------INTQPNKEAHFAVFPTTLVEPCILAGSKPG 233
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
D +LDPF GSGT+ V + L R ++GIE+ +YI IA KR+
Sbjct: 234 DYVLDPFLGSGTTAVVCQNLDRKYVGIELNPEYIQIAVKRL 274
>gi|317176913|dbj|BAJ54702.1| Type II restriction enzyme M protein [Helicobacter pylori F16]
Length = 276
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 103/263 (39%), Positives = 146/263 (55%), Gaps = 12/263 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
S + + I ++Q+ +F + +G+ VL + DLIFADPPY L +G L +
Sbjct: 6 SNEIACPIFKSQDQLF----TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQN 59
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+V WDK S D F W+ ++ LK G+L + G+YHNIF +G +LQ L
Sbjct: 60 GKIVSVNKGDWDKEESVNDIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKL 119
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+F ILN I W+K+NP PNF R ++ E +IWA S K + FNY+ LK N D QMR
Sbjct: 120 DFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMR 178
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
W P + E+ K HPTQKP ALL R+L+ ++ +I DPF GS T+G A
Sbjct: 179 DVWSFPAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAA 233
Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
L+R FIGIE + +++ I+ R
Sbjct: 234 NLLKRQFIGIEKESEFVKISMDR 256
>gi|194290204|ref|YP_002006111.1| DNA-methyltransferase [Cupriavidus taiwanensis LMG 19424]
gi|193224039|emb|CAQ70048.1| DNA-METHYLTRANSFERASE (DNA-MODIFICATION METHYLASE) PROTEIN;
Adenine-specific methyltransferase,
N4/N6-methyltransferase family [Cupriavidus taiwanensis
LMG 19424]
Length = 309
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 27/248 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + + + +LP SVDLI ADPPY L + D L+ +AY
Sbjct: 29 RLFQEDMFEGIARLPDGSVDLIVADPPYGLGKDYG---NDSDLLSG-----------QAY 74
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ W+ A L P GTL++ ++ + ML+ ++N+I+W + P
Sbjct: 75 LDWSERWMDAVVPKLAPKGTLYLFCTWQYSPELFVMLKRR-LTMINEIIWDRRVPSMGGT 133
Query: 142 GRRFQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDVQMRSDWLIPICS 190
R+F + H+ + + + + T + + +
Sbjct: 134 TRKFSSVHDNIGFFARARDYYFDLDPVRIPYDPETKKARSRPRFEGKKWLEVGYNPKDLW 193
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
R+ +D E+ HPTQKP ++ R+++SS PG ++LDPF GSGT+ + R F
Sbjct: 194 SVSRIHRQDPERANHPTQKPLEIVERMVLSSCPPGGLVLDPFAGSGTTAVACLRHGRRFA 253
Query: 250 GIEMKQDY 257
G E+ +Y
Sbjct: 254 GFEINPEY 261
>gi|170703050|ref|ZP_02893876.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
IOP40-10]
gi|170132042|gb|EDT00544.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
IOP40-10]
Length = 283
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 30/259 (11%)
Query: 28 SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + +LP S+DLI ADPPY L + + DK S + + A+
Sbjct: 37 NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDVFLAW 82
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
TR WL LKP+G++++ ++ I + L+ ++N+I+W + P RR
Sbjct: 83 TREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRR 141
Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
F + H+ + + + T + K + +
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261
Query: 253 MKQDYIDIATKRIASVQPL 271
+ + Y IA +R+ ++
Sbjct: 262 INESYCAIAHERVNALAAQ 280
>gi|219849124|ref|YP_002463557.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aggregans DSM 9485]
gi|219543383|gb|ACL25121.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
9485]
Length = 304
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 73/272 (26%), Positives = 114/272 (41%), Gaps = 44/272 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G++I+ L L +SVD+IFADPPYN++ WD F S E Y
Sbjct: 30 IWVGDAIAWLRSLETESVDMIFADPPYNIKKA----------------EWDTFESQEEYV 73
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
++ W+ RVLKP+GTL++ G I + L I K+ G
Sbjct: 74 EWSLLWIREAARVLKPSGTLYICGFSEIIADLKLPASRLFKGCRWLIWHYKNKA---NLG 130
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK---- 198
+ +HE+++ S + + G R
Sbjct: 131 SDWGRSHESILHFRKSKNFTFNIDDVRIPYGNHTLKYPEHPQAETSQYGKGNGRKNTIWQ 190
Query: 199 ---------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ HPTQKPE LL +++++S+ GD+I+DPF GSGT+
Sbjct: 191 PHPRGAKPRDVIEIPTTCNGMHEKTPHPTQKPEELLRKLVLASSNVGDLIVDPFLGSGTT 250
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
VA++LRR++ G ++ +Y A +RI V+
Sbjct: 251 AVVAEQLRRNWKGCDISLEYCRWAVRRIELVE 282
>gi|119511116|ref|ZP_01630234.1| type IIS restriction enzyme M1 protein (mod) [Nodularia spumigena
CCY9414]
gi|119464211|gb|EAW45130.1| type IIS restriction enzyme M1 protein (mod) [Nodularia spumigena
CCY9414]
Length = 293
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 44/294 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ +GNSI L L ++S+DL+FADPPYN++ WD F + E Y
Sbjct: 18 KLYQGNSIDWLTSLESESIDLVFADPPYNIKKA----------------EWDNFENQEKY 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ W+ R+LK G+L++ G + + + + +
Sbjct: 62 IEWSIQWISQASRILKSTGSLYICG---FSEILADLKHPASKYFKSCRWLIWHYKNKANL 118
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG- 200
G + +HE++I S K + A+ G + +
Sbjct: 119 GNDWGRSHESIIHFRKSDSVKLNIDDVRIPYGAHTLKYPSHPQAETSAYGKGTKKKHNNW 178
Query: 201 ------------------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ HPTQKPE L+ + +++S++ GD+I+DPF GSGT
Sbjct: 179 TPNPKGAKPKDVIEIPTTCNGMDEKTPHPTQKPEELIRKFVLASSQEGDLIIDPFSGSGT 238
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
+ VA++L R ++G ++ +Y ATKRI +V+ + E K E RV+
Sbjct: 239 TVVVAEQLNRYWMGCDLNIEYNYWATKRIENVRRMTKEEWLAFDRKNAERRVSI 292
>gi|255326978|ref|ZP_05368054.1| site-specific DNA-methyltransferase [Rothia mucilaginosa ATCC
25296]
gi|255296195|gb|EET75536.1| site-specific DNA-methyltransferase [Rothia mucilaginosa ATCC
25296]
Length = 423
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 20/280 (7%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--------RPDHSLVDAVTDSW- 72
+++ +++ L +LP + +I+ DPP+N + D + + S
Sbjct: 33 LLVQADNLEYLRELPDGAFTVIYIDPPFNTGKKQTRRTLSAEASEKGDRTGFKGKSYSST 92
Query: 73 -----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
SFE Y AF + R+L +GTL++ + + + M +
Sbjct: 93 LQTLASYNDSFEDYWAFLAPRIEQAHRLLAQDGTLYLHLDWREVHYVKIMCDMIFGRENF 152
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQMR 181
+ RR+ H+ ++ + + + Y A E+ R
Sbjct: 153 INELIWAYDYGAKSTRRWPTKHDNILVYAKDHRCYYFNTAEVDREPYMAPGLVTEEKASR 212
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ + + +PTQKP LL R++ +S++PGD +LD F GSG++GA A
Sbjct: 213 GKLPTDVWWHTIVSPTGREKTGYPTQKPTGLLRRMIAASSRPGDWVLDFFAGSGSTGAAA 272
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
+L R F+ ++ I++ KR+ V G
Sbjct: 273 AQLGRKFVCVDQNPPAIEVMAKRLGVDSVSFAEYRGVPRG 312
>gi|284052959|ref|ZP_06383169.1| putative methyltransferase [Arthrospira platensis str. Paraca]
Length = 295
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 79/311 (25%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 18 EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + + G++I +L + A SV+LIF DPPYN+ + D+++
Sbjct: 7 DDRHTLFHGDAIQILSSQIAANSVNLIFVDPPYNIGKKFSNFH-------------DQWN 53
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E Y ++ WL C RVLKPNGTL+V+ S ++ L+ + + +
Sbjct: 54 SEEDYINWSYQWLDECVRVLKPNGTLYVMTSTQSMPYFDIYLRQKMSILSR--IVWHYDS 111
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY------------------TFNYDALKAANEDV 178
+ F + +E ++ K + + N +
Sbjct: 112 SGVQAKKYFGSMYEPILHCVKDRKNYIFNSADIKVEAKTGAQRKLIDYRKPVPTQYNSEK 171
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ W P R R + E HP QKPE+LL RI+++ST D++LDPF G+ T+
Sbjct: 172 VPGNVWYFPRV----RYRMAEYEN-HPAQKPESLLERIILASTNKHDLVLDPFAGTFTTA 226
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
AVAK+L R + IE +++Y+ I +R+ Q +L + +T+ +
Sbjct: 227 AVAKRLGRFSLSIESQEEYLKIGLRRVLGWQEYQGEKLLPPSKNQTKKNTNC---PQNQF 283
Query: 299 IQPGQILTNAQ 309
IQP + +A
Sbjct: 284 IQPS--IFDAD 292
>gi|156743626|ref|YP_001433755.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156234954|gb|ABU59737.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 332
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 44/272 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G++I+ L L +SVD+IFADPPYN++ WD F S E Y
Sbjct: 58 IWIGDTIAWLRSLETESVDMIFADPPYNIRKA----------------EWDTFESQEEYV 101
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
++ W+ RVLKP+GTL++ G I + I K+ G
Sbjct: 102 EWSLLWIREAARVLKPDGTLYICGFSEIIADLKLPASRFFKGCRWLIWHYKNKA---NLG 158
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK---- 198
+ +HE+++ S + + G R
Sbjct: 159 SDWGRSHESILHFRKSKNFTFNIDDVRIPYGNHTLKYPEHPQAETSQYGKGNGRKNSIWQ 218
Query: 199 ---------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ HPTQKPE LL +++++S+ GD+I+DPF GSGT+
Sbjct: 219 PHPRGAKPRDVIEIPTTCNGMHEKTPHPTQKPEELLRKLVLASSNVGDLIVDPFLGSGTT 278
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
VA++LRR++ G ++ +Y +RI V+
Sbjct: 279 AVVAEQLRRNWKGCDISLEYCRWTVRRIELVE 310
>gi|171321986|ref|ZP_02910869.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
gi|171092716|gb|EDT38001.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
Length = 283
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/254 (25%), Positives = 113/254 (44%), Gaps = 30/254 (11%)
Query: 28 SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + +LP S+DLI ADPPY L + + DK S + + A+
Sbjct: 37 NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDVFLAW 82
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
TR WL LKP+G++++ ++ I + L+ ++N+I+W + P RR
Sbjct: 83 TREWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTTRR 141
Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
F + H+ + + + T + K + +
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261
Query: 253 MKQDYIDIATKRIA 266
+ + Y IA +R+
Sbjct: 262 INESYCAIAHERVN 275
>gi|167583952|ref|ZP_02376340.1| DNA methylase N-4/N-6 domain protein [Burkholderia ubonensis Bu]
Length = 283
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 30/254 (11%)
Query: 28 SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + +LP S+DLI ADPPY L + + DK S + + A+
Sbjct: 37 NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDHLAW 82
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
T AWL LKP G+++V ++ I + L+ ++N+I+W + P RR
Sbjct: 83 TLAWLELAIPKLKPTGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTTRR 141
Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
F + H+ + + + T + K + +
Sbjct: 142 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 201
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G E
Sbjct: 202 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 261
Query: 253 MKQDYIDIATKRIA 266
+ + Y IA +RIA
Sbjct: 262 INESYCAIAHERIA 275
>gi|33337327|gb|AAQ13331.1| HpyIIIM protein [Helicobacter pylori]
Length = 274
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 19 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 137 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIQIS 250
Query: 262 TKR 264
R
Sbjct: 251 MDR 253
>gi|167621342|ref|ZP_02389973.1| DNA modification methylase RsrI [Burkholderia thailandensis Bt4]
gi|257141965|ref|ZP_05590227.1| DNA modification methylase RsrI [Burkholderia thailandensis E264]
Length = 285
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 27/262 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI ADPPY L + + DK S + +
Sbjct: 34 LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 79
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK G+++V ++ I + L+ ++N+I+W + P
Sbjct: 80 AWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLKTR-LTMINEIIWDRRVPSMGGTT 138
Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + S T + K + +
Sbjct: 139 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 198
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 199 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 258
Query: 251 IEMKQDYIDIATKRIASVQPLG 272
E+ + Y IA +R+AS+ +
Sbjct: 259 YEINESYCAIARERVASLAAVP 280
>gi|167577250|ref|ZP_02370124.1| DNA modification methylase RsrI [Burkholderia thailandensis TXDOH]
Length = 285
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 27/262 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI ADPPY L + + DK S + +
Sbjct: 34 LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 79
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK G+++V ++ I + L+ ++N+I+W + P
Sbjct: 80 AWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLKTR-LTMINEIIWDRRVPSMGGTT 138
Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + S T + K + +
Sbjct: 139 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 198
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 199 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 258
Query: 251 IEMKQDYIDIATKRIASVQPLG 272
E+ + Y IA +R+AS+ +
Sbjct: 259 YEINESYCAIARERVASLAAVP 280
>gi|317179900|dbj|BAJ57686.1| Type II restriction enzyme M protein [Helicobacter pylori F32]
Length = 277
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 100/243 (41%), Positives = 136/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIQIS 253
Query: 262 TKR 264
R
Sbjct: 254 MDR 256
>gi|221196942|ref|ZP_03569989.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2M]
gi|221203612|ref|ZP_03576631.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2]
gi|221177546|gb|EEE09974.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2]
gi|221183496|gb|EEE15896.1| DNA modification methylase RsrI [Burkholderia multivorans CGD2M]
Length = 283
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 27/261 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ +LP S+DLI ADPPY L + + DK S +A+
Sbjct: 35 LHNRDFLTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDAFL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+TR WL LKP+G+++V ++ I + L+ ++N+I+W + P
Sbjct: 81 GWTREWLELAIPKLKPSGSMYVFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGTT 139
Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + T + K + +
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259
Query: 251 IEMKQDYIDIATKRIASVQPL 271
E+ + Y IA +R+ ++
Sbjct: 260 YEINESYCAIARERVHALAAQ 280
>gi|218439992|ref|YP_002378321.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
gi|218172720|gb|ACK71453.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
Length = 305
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/309 (20%), Positives = 128/309 (41%), Gaps = 31/309 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + DKI+ G+ + + K+P +S+D+ FADPP+N + + +
Sbjct: 2 LDSYIDKILLGDCLDLFSKIPDESIDVTFADPPFNFKKKYGNIKDN-------------- 47
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F+ Y + W+ RV KP+G++++ HNI + T + N W +
Sbjct: 48 LEFKEYLKWCELWIDEMIRVTKPSGSIFI----HNIPKWLTYYCSFLNEKSNFRHWISWD 103
Query: 136 PMPNFRGRRFQNAHETLIWASP-------------SPKAKGYTFNYDALKAANEDVQMRS 182
G+ Q +H +++ + + + + Y + +
Sbjct: 104 APTAPMGKTLQPSHYGILFYAKTLAKNKFYEIRYSHKRCRKCNYLYKDYGGKKDSIHPFG 163
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + + R+++ HP Q P LL RI++ ST DIILDPF G+GT+ AK
Sbjct: 164 PLVSDVWTDIHRIKHNKYRDNHPCQLPVHLLERIILMSTDESDIILDPFMGTGTTAIAAK 223
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
+L R +IG E+ + Y+++A ++ + I ++ + + ++ +
Sbjct: 224 RLGRHYIGFEINELYLEVAEGKLRQEKDNSKIGNVWVSFFPNPKYNSVVTIRDKDWEELA 283
Query: 303 QILTNAQGN 311
Q +
Sbjct: 284 QNYFIPKER 292
>gi|188526898|ref|YP_001909585.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
Shi470]
gi|188143138|gb|ACD47555.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
Shi470]
Length = 277
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 134/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLERQFIGIEKESEFVKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MDR 256
>gi|229826749|ref|ZP_04452818.1| hypothetical protein GCWU000182_02125 [Abiotrophia defectiva ATCC
49176]
gi|229789619|gb|EEP25733.1| hypothetical protein GCWU000182_02125 [Abiotrophia defectiva ATCC
49176]
Length = 312
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 70/278 (25%), Positives = 117/278 (42%), Gaps = 26/278 (9%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ + + + E DK I GN++ +L LP SVDL+ DPPYNL + + +
Sbjct: 21 KRCMVLDKKAELSEILDKTILGNTLEILSLLPENSVDLLIVDPPYNLDKDFHGNKFKRT- 79
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
S E Y+ +T +W+ + +LK N T++V + + +I +L+
Sbjct: 80 ------------SGEIYEEYTESWIKLVKPLLKKNATIYVCCDWLSSSQIFMVLKEYFHV 127
Query: 125 ILNDIVWR---------KSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDAL 171
R N M + N + + A ++
Sbjct: 128 QNRITWQREKGRGALTNWKNGMEDIWFATNSNKYTFNVEAVKVRRSVIAPYKEDGKPKDW 187
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ E + S + HPTQKPE LL++++++S+ GD++LDPF
Sbjct: 188 EETKEGRFRNTYPSNFWDDISIPYWSMPENTAHPTQKPEKLLAKLILASSNEGDVVLDPF 247
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GSG++ AKKL R +IGIE + Y A KR+ +
Sbjct: 248 LGSGSTSVTAKKLGRHYIGIEQNEQYCVWAEKRLHMAE 285
>gi|261393408|emb|CAX51044.1| putative DNA modification methylase [Neisseria meningitidis 8013]
gi|325205032|gb|ADZ00486.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
M01-240355]
Length = 255
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 33/270 (12%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------NGQLYR 59
+N ++++ E+++K +KG+S+ +++ +P+ S+DLI PPYNL+
Sbjct: 3 NLNLEKDTLAEFRNKFLKGDSLEIMKSIPSGSIDLIVTSPPYNLKNSTGNGMKDGRGGKW 62
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ SL++ +D D Y + R L R+LK +G ++ + +
Sbjct: 63 KNASLINGYSDHNDCM-PHHEYVEWQRNCLSEMYRLLKDDGAIFYNHKWRVQGGLLQDRH 121
Query: 120 NLNFWI-LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
++ + I+ + NF F +E + + +
Sbjct: 122 DIVSGFPVRQIIIWRRKGGINFNKGYFLPTYEVIYMICKPKFS----------------L 165
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
++ + ++ ++N HP P AL+ RI+ S+ +ILDPF GSGT+
Sbjct: 166 CPGANKYGDVWEFTQEMKN-----PHPAPFPVALIERIISSTNAK--VILDPFMGSGTTA 218
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
AKKL R FIGIE+ +YI +A +R+
Sbjct: 219 IAAKKLYREFIGIEISAEYIALAQERLNET 248
>gi|320101941|ref|YP_004177532.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
ATCC 43644]
gi|319749223|gb|ADV60983.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
43644]
Length = 336
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 81/300 (27%), Positives = 126/300 (42%), Gaps = 50/300 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+ I+ + +L KSVDLIFADPP+N+ D D D + Y
Sbjct: 43 IHVGDCIAGMNQLEDKSVDLIFADPPFNIGYTY----------DVYNDRCDD----QEYL 88
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFR 141
A++R W+ A RVL P GT W+ + ++ I+W + + R
Sbjct: 89 AWSRRWIEAAVRVLSPTGTFWLAIGDDFAAELKVLMHRELGLTFRGWIIWYYTFGVHCKR 148
Query: 142 GRRFQNAHETLIWASPSPKAKGY-------------TFNYDALKAA---NEDVQM----- 180
F +H L++ + P+ + +N +D +
Sbjct: 149 K--FTRSHTHLLYFTRHPRDFTFNADAIRVPSARQRVYNDKRAHPLGRVPDDTWILRPQD 206
Query: 181 --------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
+S W +P G+ R R + H Q PE +L RI+ + + PGD++LDPF
Sbjct: 207 FPGGFGPDQSVWHVPRVCGTFRER----QGWHGCQMPERILGRIMSACSNPGDLVLDPFV 262
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
GSGT+ AVA+KL R +G E+ DY A +R+ SV+P ++ PR
Sbjct: 263 GSGTTLAVARKLHRRGVGFELSADYAMNACQRLESVRPGDPLDGGDGLETLARPRQPRGS 322
>gi|308062955|gb|ADO04842.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
Sat464]
Length = 276
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFVKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MDR 256
>gi|2995646|gb|AAC08984.1| DNA modification methyltransferase M.XbaI [Xanthomonas campestris]
Length = 423
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 105/281 (37%), Gaps = 30/281 (10%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
++G+ + L +L DL++ DPP+ D + D+W Y
Sbjct: 11 VQGDCLVELARLEECEADLVYLDPPFFTNRRHSSISRDRINAFSFDDAWG---DLGEYAD 67
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
F L RVLK +G+++V F + T+L N+ S + R
Sbjct: 68 FMEQRLREAHRVLKHSGSIFVHCDTSANFLLRTLLNNIFGASQFRSEIIWSYKRWSNSAR 127
Query: 144 RFQNAHETLIWASPS--------PKAKGYTFNYDALKAANE------------------- 176
AH+T+++ S S + T N D + +
Sbjct: 128 NLLPAHQTILFYSKSDAYKFNVLHGSYSETTNVDQILQLRQRDADGVSKYATDKLGNTIY 187
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ L + + +PTQKP LL RI+ ST PGD I+DPF GSGT
Sbjct: 188 GTEKNGVPLNDVWAIPFLNPKAKERTGYPTQKPILLLERIIEISTDPGDFIVDPFCGSGT 247
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
+ A L R GI+ ++ + +A +RI + L
Sbjct: 248 TLVAAAILGRRAFGIDTSREAVALANRRIEEPVRTDSALLK 288
>gi|134293157|ref|YP_001116893.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134136314|gb|ABO57428.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
G4]
Length = 283
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 27/261 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ +LP S+DLI ADPPY L + + DK S +A+
Sbjct: 35 LYNRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDAFL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LKP+G++++ ++ I + L+ ++N+I+W + P
Sbjct: 81 AWTREWLDLAIPKLKPSGSMYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 139
Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + T + K + +
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259
Query: 251 IEMKQDYIDIATKRIASVQPL 271
E+ + Y IA +R+ ++
Sbjct: 260 YEINESYCAIAHERVNALAAQ 280
>gi|210135511|ref|YP_002301950.1| hypothetical protein HPP12_1318 [Helicobacter pylori P12]
gi|210133479|gb|ACJ08470.1| hypothetical protein HPP12_1318 [Helicobacter pylori P12]
Length = 159
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 80/145 (55%), Positives = 100/145 (68%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + + V D WDKF
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKF 63
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SFE YD F WL C+R+LK NG++ VIGS+ NIFRIG LQNL FWILNDI+W KSN
Sbjct: 64 GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIIWHKSN 123
Query: 136 PMPNFRGRRFQNAHETLIWASPSPK 160
P+PNF G+R NAHETLIW + K
Sbjct: 124 PVPNFAGKRLCNAHETLIWCAKKIK 148
>gi|311070542|ref|YP_003975465.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
atrophaeus 1942]
gi|310871059|gb|ADP34534.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
atrophaeus 1942]
Length = 360
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 48/313 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI G+++++L +P SVDL+ PPYN+ RP E
Sbjct: 35 LNKIYNGDTMNMLLDIPDNSVDLVVTSPPYNINKFKNDRRP-----------------LE 77
Query: 80 AYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNI--------FRIGTMLQNLNFWILNDIV 130
Y + + C RVLKP+G+ W +G+Y N R + ++L + N IV
Sbjct: 78 EYLKWQTEIIEQCHRVLKPSGSIFWQVGTYVNDSGAHIPLDIRFFPIFESLGMFPRNRIV 137
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI---- 186
W + + + ++F HET++W + +P+ K + + + D
Sbjct: 138 WVRPHGL--HANKKFAGRHETILWFTKTPEYKFFLDPIRVPQKYANKKHYKGDKKGELSG 195
Query: 187 --------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + N + + +HPTQ PE ++ RI++S+T+P DI+LDPF G GT+
Sbjct: 196 DPLGKNPGDVWAFRNVRHNHEEDTIHPTQYPEDMIERIVLSTTEPNDIVLDPFIGMGTTA 255
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
+VAK L R F G E++++Y+DIA + ++ + K G+
Sbjct: 256 SVAKNLNRYFCGAEIEKEYVDIAYQILS---GEPDENNNFPNLKTLRQYCEK-----NGI 307
Query: 299 IQPGQILTNAQGN 311
I P Q Q
Sbjct: 308 IDPSQYTFTRQRK 320
>gi|325523911|gb|EGD02128.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
TJI49]
Length = 284
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 30/259 (11%)
Query: 28 SISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + +LP S+DLI ADPPY L + + DK S +A+ A+
Sbjct: 38 NRDFMTEAARLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDAFLAW 83
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
TR WL LKP+G++++ ++ I + L+ ++N+I+W + P RR
Sbjct: 84 TREWLELAVPKLKPSGSMYIFCTWQYAPEIFSFLKTR-LTMVNEIIWDRRVPSMGGTTRR 142
Query: 145 FQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
F + H+ + + + T + K + +
Sbjct: 143 FTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVS 202
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G E
Sbjct: 203 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYE 262
Query: 253 MKQDYIDIATKRIASVQPL 271
+ + Y IA +R++++
Sbjct: 263 INESYCAIAHERVSALAAQ 281
>gi|308061386|gb|ADO03274.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
Cuz20]
Length = 276
Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DGFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLERQFIGIEKESEFVKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MDR 256
>gi|15643096|ref|NP_228139.1| m4C-methyltransferase [Thermotoga maritima MSB8]
gi|4980829|gb|AAD35415.1|AE001714_6 m4C-methyltransferase [Thermotoga maritima MSB8]
Length = 329
Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 99/269 (36%), Gaps = 39/269 (14%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
DK+I+G++ VL+K+P S+ L+ PPYN+ D+
Sbjct: 72 ENLLDKVIEGDAREVLKKIPDCSIHLMVTSPPYNVGKEY-----------------DEDM 114
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------------HNIFRIGTMLQNLN 122
+ + Y F + RVL G + H +IG +++
Sbjct: 115 TLDEYLEFIEEIMKEVYRVLVWGGRACFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGEI 174
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
W + V S ++ + HE +I S + + +A +
Sbjct: 175 IWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREAKSTITREEF 234
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ E + HP PE L R + T GD++LDPF G GT+
Sbjct: 235 LE-FTRSVWKFPPESAK----RVGHPAPFPEELPYRCIQLYTFKGDVVLDPFAGVGTTCV 289
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
A K R F+GIE+ +Y+ A +R+ +
Sbjct: 290 AAVKTGRHFVGIEINPEYVKKAEERVKDI 318
>gi|20177971|sp|Q45489|MTB2_BACSU RecName: Full=Modification methylase BglII; Short=M.BglII; AltName:
Full=N(4)- cytosine-specific methyltransferase BglII
gi|1293620|gb|AAC45061.1| BglII modification methylase [Bacillus subtilis]
Length = 360
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 48/313 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI G+++++L +P SVDL+ PPYN+ RP E
Sbjct: 35 LNKIYNGDTMNMLLDIPDNSVDLVVTSPPYNINKFKNDRRP-----------------LE 77
Query: 80 AYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNI--------FRIGTMLQNLNFWILNDIV 130
Y + + C RVLKP+G+ W +G+Y N R + ++L + N IV
Sbjct: 78 EYLKWQTEIIEQCHRVLKPSGSIFWQVGTYVNDSGAHIPLDIRFFPIFESLGMFPRNRIV 137
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI---- 186
W + + + ++F HET++W + +P+ K + + + D
Sbjct: 138 WVRPHGL--HANKKFAGRHETILWFTKTPEYKFFLDPIRVPQKYANKKHYKGDKKGELSG 195
Query: 187 --------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + N + + +HPTQ PE ++ RI++S+T+P DI+LDPF G GT+
Sbjct: 196 DPLGKNPGDVWAFRNVRHNHEEDTIHPTQYPEDMIERIVLSTTEPNDIVLDPFIGMGTTA 255
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
+VAK L R F G E++++Y+DIA + ++ + K G+
Sbjct: 256 SVAKNLNRYFYGAEIEKEYVDIAYQILS---GEPDENNNFPNLKTLRQYCEK-----NGI 307
Query: 299 IQPGQILTNAQGN 311
I P Q Q
Sbjct: 308 IDPSQYTFTRQRK 320
>gi|15644722|ref|NP_206892.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
26695]
gi|2313175|gb|AAD07163.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
26695]
Length = 277
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGINGI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKDTGSLLISGTYHNIFSLGCVLQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFIKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MDR 256
>gi|291295897|ref|YP_003507295.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
DSM 1279]
gi|290470856|gb|ADD28275.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
Length = 286
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 36/277 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL--------------------QLNGQLYRPD 61
+I++ + + LP S LI+ DPP+N G+ YR +
Sbjct: 3 RIVQAECLDYIRTLPEASFPLIYLDPPFNTRKTQQRRRIRAVADEQGSRRGFGGKRYRTE 62
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
D +D F F R L R+L PNG+L+V Y + + +L +
Sbjct: 63 ALEAPVYPDRYDDF------VEFLRPRLEQAYRLLTPNGSLFVHLDYREVHYVKVLLDQI 116
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------LKA 173
+ +R+ H+TL+W + + YTFNY+A K
Sbjct: 117 FGRKSFINEIIWAYDYGGRSKKRWPAKHDTLLWYAKH--PQKYTFNYEAIDRIPYLAPKM 174
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
A + R + + + + +PTQKP LL RI+ + PG+++LD F G
Sbjct: 175 AGPEKASRGKTPTDVWWMTIVPTSSKEKTGYPTQKPLRLLERIVRVHSNPGEVVLDFFAG 234
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
SGT+G A + R F+ ++ D + + +R+A+ +P
Sbjct: 235 SGTTGEAAARNGRGFLLVDQSPDAVAVMRRRLAAFEP 271
>gi|109948003|ref|YP_665231.1| DNA methyltransferase [Helicobacter acinonychis str. Sheeba]
gi|109715224|emb|CAK00232.1| DNA methyltransferase [Helicobacter acinonychis str. Sheeba]
Length = 278
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 104/258 (40%), Positives = 145/258 (56%), Gaps = 11/258 (4%)
Query: 10 NENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
N+ +S+FE DK+ +G+ VL L + DLIFADPPY L +G L +V
Sbjct: 5 NQTPHSVFESTDKLFTLYQGDCNEVL-SLFENTFDLIFADPPYFLSNDG-LSIQSGKIVS 62
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
WDK D F W+ + ++ LK G+L + G+YHN+F +G +LQ L+F IL
Sbjct: 63 VNKGDWDKEERINDIDEFNYQWINSAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 122
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
N I W+K+NP PNF R ++ E +IWA S K + FNY+ LK N D QMR W
Sbjct: 123 NLITWQKTNPPPNFSCRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINSDKQMRDVWSF 181
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
P + E+ K HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R
Sbjct: 182 PAIAPWEKTNGK-----HPTQKPLALLVRLLLMASNENSLIGDPFSGSSTTGIAANLLKR 236
Query: 247 SFIGIEMKQDYIDIATKR 264
FIGIE + ++I ++ R
Sbjct: 237 KFIGIEKESEFIKMSINR 254
>gi|297379313|gb|ADI34200.1| Modification methylase [Helicobacter pylori v225d]
Length = 277
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKTNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253
Query: 262 TKR 264
R
Sbjct: 254 IDR 256
>gi|167566406|ref|ZP_02359322.1| N-6 adenine-specific DNA methylase [Burkholderia oklahomensis
EO147]
Length = 282
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 27/263 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ LP S+DLI ADPPY L + + DK S + +
Sbjct: 34 LHNRDFLTEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 79
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK +G+++V ++ I + L+ ++N+I+W + P
Sbjct: 80 AWTREWLDLAIPKLKSSGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 138
Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + S T + K + +
Sbjct: 139 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 198
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 199 VSRLHRQHAERVDHPTQKPLEIVERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 258
Query: 251 IEMKQDYIDIATKRIASVQPLGN 273
E+ + Y IA +R+A++ +
Sbjct: 259 YEINESYCAIAHERVAALAAPTD 281
>gi|150377536|ref|YP_001314131.1| site-specific DNA-methyltransferase (adenine-specific)
[Sinorhizobium medicae WSM419]
gi|150032083|gb|ABR64198.1| Site-specific DNA-methyltransferase (adenine-specific)
[Sinorhizobium medicae WSM419]
Length = 707
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 74/403 (18%), Positives = 150/403 (37%), Gaps = 60/403 (14%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNL 51
+Q++ + + + W +K+I G++ +L L + LI+ DPP+++
Sbjct: 74 AQQDLFSTDSRGRQLQGWNNKLIWGDNKLILSSLKNGPLRQEIERHGGLKLIYIDPPFDV 133
Query: 52 QLNGQL----------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+ + +P+ A D+W + + ++ A L+ CR +L G+
Sbjct: 134 GADFSMDIEIGDDTFTKKPNILEEIAYRDTWGRGAD--SFIAMIYERLILCRDLLADEGS 191
Query: 102 LWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRG-RRFQNAHETLIWASPS 158
++V + + I +++ + + N+I+W N + G + F H+ L+ S
Sbjct: 192 IFVHCDWRVNWAIRSVMNEIFGANFFRNEIIWHYENKLGTGWGAKTFDTRHDVLLRFSKG 251
Query: 159 PKAKGY-------TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD------------ 199
K + E ++ +E + +
Sbjct: 252 KKYVHNEIAEKVKVEKMQPVTKKVEGERIWLRNDDGSLMYAEGAKERPVGDVWTIPIINP 311
Query: 200 ---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+PTQKPE L+ RI++S + GD+I D F GSGT+ AVA+KL R +I ++ +
Sbjct: 312 VATERLNYPTQKPEKLIERIILSGSNEGDLIADFFVGSGTTAAVAEKLGRKWIVSDLGKF 371
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
+ KR+ VQ E R + + + L Q
Sbjct: 372 AVHTTRKRMIGVQRGLKAE---GKDYRAFEILNLGRYERQHYVGVNPNLREEQRQKQ--- 425
Query: 317 CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
+ + + +E +G+ ++ ++ G L
Sbjct: 426 -------LEEKETAFLDLILHAYRAERTDGFASFHGKRAGRLV 461
>gi|237756015|ref|ZP_04584598.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691831|gb|EEP60856.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 267
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 21/265 (7%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + ++ +++I G+++ +L+++P KS+DL PPYN + + D + D
Sbjct: 2 NELEKFINQVIHGDALEILKQIPDKSIDLGITSPPYNKKEKHGGWLVDKVRYNGYKD--- 58
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
S E Y ++ L RV K G+ + H + + + W+L
Sbjct: 59 -VMSEEEYQSWQVEVLNQLYRVTKEGGSFFYN---HKVRYEDGKMIHPLQWLLKTKWNIW 114
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ N R + + + + + + + +
Sbjct: 115 QEIIWNRR-------------IAGNIRGWRFWQVEERIYWLVKGKPKELKSKHAKLTSVW 161
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIE 252
+R + G K HP P L +RI+ S D I++DPF G+GT+ AK L + +IG++
Sbjct: 162 DIRPEHGHKEHPAVFPIELPTRIISSILDENDGIVIDPFCGTGTTLVAAKLLGKKYIGVD 221
Query: 253 MKQDYIDIATKRIASVQPLGNIELT 277
+ ++Y+D A KRI + L
Sbjct: 222 ISKEYVDYAKKRIEMAKEEERRILK 246
>gi|297566253|ref|YP_003685225.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus
silvanus DSM 9946]
gi|296850702|gb|ADH63717.1| DNA methylase N-4/N-6 domain protein [Meiothermus silvanus DSM
9946]
Length = 284
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 66/270 (24%), Positives = 111/270 (41%), Gaps = 22/270 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT------------ 69
+II +++ L+ LP + LI+ DPP+N R + DA
Sbjct: 3 RIILAENLAYLQTLPDGAFPLIYIDPPFNTGRIQSRRRI-RAKSDANGTRGGFGGRRYQV 61
Query: 70 ---DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
DS S + + AF L RVL NG+ ++ Y I ++ +
Sbjct: 62 ELLDSPVYADSHQDFLAFLEPRLQEGYRVLSENGSFFLHLDYREIHYAKVLMDQIFGRES 121
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANEDVQM 180
+ R+ H+T++W + +P+ + + Y A A +
Sbjct: 122 FINEIIWAYDFGGRPKNRWPAKHDTILWYAKNPRRYTFHYTEIDRIPYMAPNLAGREKAR 181
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
R + + N + +PTQKP LL RI+ + PGDI+LD F GSGT+G
Sbjct: 182 RGKVPTDVWWQTIVPTNSKEKTGYPTQKPLKLLERIIRVHSNPGDIVLDFFAGSGTTGEA 241
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
A +L R F+ ++ + + I +R+A +P
Sbjct: 242 AARLGRGFVLVDHHPEAVQIMAQRLAFAKP 271
>gi|257125924|ref|YP_003164038.1| methyltransferase [Leptotrichia buccalis C-1013-b]
gi|257049863|gb|ACV39047.1| DNA methylase N-4/N-6 domain protein [Leptotrichia buccalis
C-1013-b]
Length = 297
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 29/268 (10%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ G+ + +L + SV+LIFADPPY + N + D F + E Y
Sbjct: 23 VLGDCLDILRSIEDNSVNLIFADPPYGIGKNFG-------------NDSDFFKNKEEYFD 69
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
+ + W+ C R+LK +GT++ + S + + + + + + + + +
Sbjct: 70 WAKKWIDECMRILKEDGTMYFMTSTQFMPFLD--MYVDDNYYVINRIIWTYDSSGVQAKT 127
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE-- 201
+F + +E ++ + S K+K D L N + + + G
Sbjct: 128 KFGSLYEPILMVTHSKKSKYTFNYQDILIETNTGAKRKLIDYRKTPPQPYNTKKVPGNVW 187
Query: 202 ------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+ HPTQKPE LL RI+++S+ DI+LDPF GS T+ AVA+KL R I
Sbjct: 188 DFSRVRYRMEEYENHPTQKPEELLKRIILASSNENDIVLDPFSGSFTTSAVAQKLNRKTI 247
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELT 277
GIE +Y I +R+ ++L
Sbjct: 248 GIETNLEYFKIGLRRLNITDEYNGVKLE 275
>gi|88854936|ref|ZP_01129602.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
gi|88816097|gb|EAR25953.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
Length = 286
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 66/273 (24%), Positives = 114/273 (41%), Gaps = 20/273 (7%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-------------NGQLYRPDHSLVDA 67
D +++G+++SV+ LP +S LI+ DPP+N G + D
Sbjct: 11 DLVVQGDNLSVISALPDESFRLIYIDPPFNTGRTQRRQALTTQRSAEGARTGFGGNTYDT 70
Query: 68 VTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
+ + + F Y F L R+L GTL++ Y + L L
Sbjct: 71 IKGALYSYDDTFADYWEFLEPRLHEAWRLLDDRGTLYLHLDYREVHYAKVALDALFGRES 130
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQM 180
+ +++ + H+T++ +PK + Y A +
Sbjct: 131 FLNEIIWAYDYGARATKKWPSKHDTILVYVKNPKNYYFNNEEVDREPYMAPGLVTPEKAA 190
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
R + + + + TQKPE +L RI+ +S++PGD +LD F GSGT+GAV
Sbjct: 191 RGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVQASSQPGDWVLDFFAGSGTTGAV 250
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
A+ L+R + +E I+I T+R++S N
Sbjct: 251 AQALKRRVVLVEQNPAAIEIITRRLSSETAFAN 283
>gi|148269728|ref|YP_001244188.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga
petrophila RKU-1]
gi|170288403|ref|YP_001738641.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga sp.
RQ2]
gi|222099314|ref|YP_002533882.1| M4C-methyltransferase [Thermotoga neapolitana DSM 4359]
gi|147735272|gb|ABQ46612.1| DNA methylase N-4/N-6 domain protein [Thermotoga petrophila RKU-1]
gi|170175906|gb|ACB08958.1| DNA methylase N-4/N-6 domain protein [Thermotoga sp. RQ2]
gi|221571704|gb|ACM22516.1| M4C-methyltransferase [Thermotoga neapolitana DSM 4359]
Length = 308
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 99/269 (36%), Gaps = 39/269 (14%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
DK+I+G++ VL+K+P S+ L+ PPYN+ D+
Sbjct: 51 ENLLDKVIEGDAREVLKKIPDCSIHLMVTSPPYNVGKEY-----------------DEDM 93
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------------HNIFRIGTMLQNLN 122
+ + Y F + RVL G + H +IG +++
Sbjct: 94 TLDEYLEFIEEIMKEVYRVLVWGGRACFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGEI 153
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
W + V S ++ + HE +I S + + +A +
Sbjct: 154 IWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREAKSTITREEF 213
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ E + HP PE L R + T GD++LDPF G GT+
Sbjct: 214 LE-FTRSVWKFPPESAK----RVGHPAPFPEELPYRCIQLYTFKGDVVLDPFAGVGTTCV 268
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
A K R F+GIE+ +Y+ A +R+ +
Sbjct: 269 AAVKTGRHFVGIEINPEYVKKAEERVKDI 297
>gi|207742815|ref|YP_002259207.1| dna-methyltransferase (dna-modification methylase) protein
[Ralstonia solanacearum IPO1609]
gi|206594209|emb|CAQ61136.1| dna-methyltransferase (dna-modification methylase) protein
[Ralstonia solanacearum IPO1609]
Length = 272
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 27/250 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ + +L SV+L+ ADPPY L + D + EA
Sbjct: 7 DGIFNEDCIAGIGQLADGSVNLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A L NG++++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKRRLA-MINEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ + R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231
Query: 249 IGIEMKQDYI 258
G E+ +Y
Sbjct: 232 AGFEINAEYC 241
>gi|227431774|ref|ZP_03913801.1| adenine-specific methyltransferase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227352457|gb|EEJ42656.1| adenine-specific methyltransferase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 231
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/248 (31%), Positives = 118/248 (47%), Gaps = 22/248 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I GN++ L +P S+DLI DPPYN+ + + +D WDK +
Sbjct: 2 KLINGNNLDALSDIPDNSIDLILTDPPYNISRKNNFESLNRAGIDF--GDWDKNADL--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
W+ R++K ++ + ++ N+ I L+ F + + I W K+NPMP R
Sbjct: 57 ----LTWIDKVPRIVKKGASIIIFNAWRNLGDIAERLEKNGFVVKDIIRWEKTNPMPRNR 112
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
RR+ +E IWA K + FN + K ++++ GS
Sbjct: 113 DRRYIVDYEFAIWAV--EKHNKWIFNRQSNKYDRSEIRVPITGKAEKILGS--------- 161
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP L+ +L+ + DI+LDPF GSG++G + L R FIGIE+ + Y IA
Sbjct: 162 --HPTQKPIKLMEELLLRHSNENDIVLDPFMGSGSTGVACRNLNREFIGIELDETYFKIA 219
Query: 262 TKRIASVQ 269
RI Q
Sbjct: 220 ENRIREAQ 227
>gi|317008767|gb|ADU79347.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
India7]
Length = 277
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 103/263 (39%), Positives = 146/263 (55%), Gaps = 12/263 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
S + + I ++Q+ +F + +G+ VL + DLIFADPPY L +G L
Sbjct: 6 SNETARPIFKSQDQLF----TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQS 59
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+V WDK D F W+ ++ LK G+L + G+YHNIF +G +LQ L
Sbjct: 60 GKIVSVNKGDWDKEDGINGIDEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGCILQKL 119
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+F ILN I W+K+NP PNF R ++ E +IWA S K + FNY+ LK N+D QMR
Sbjct: 120 DFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINKDKQMR 178
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
W P + E++ K HPTQKP ALL R+L+ ++ +I DPF GS T+G A
Sbjct: 179 DVWSFPAIAPWEKVNGK-----HPTQKPLALLVRLLLMASDKNSLIGDPFSGSSTTGIAA 233
Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
L+R FIGIE + ++I I+ R
Sbjct: 234 NLLKRQFIGIEKESEFIKISINR 256
>gi|207722999|ref|YP_002253422.1| dna-methyltransferase (dna-modification methylase) protein
[Ralstonia solanacearum MolK2]
gi|206588188|emb|CAQ18757.1| dna-methyltransferase (dna-modification methylase) protein
[Ralstonia solanacearum MolK2]
Length = 272
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 27/250 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ + +L SV+L+ ADPPY L + D + EA
Sbjct: 7 DGIFNEDCIAGIGQLADGSVNLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A L NG++++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKRRLA-MINEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ + R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231
Query: 249 IGIEMKQDYI 258
G E+ +Y
Sbjct: 232 AGFEINAEYC 241
>gi|320104814|ref|YP_004180405.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
ATCC 43644]
gi|319752096|gb|ADV63856.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
43644]
Length = 310
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/290 (21%), Positives = 110/290 (37%), Gaps = 31/290 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQL--------------------NGQLYRPDH 62
+ G+++ VL KLP + DLI+ DPP+N G YR
Sbjct: 10 VYFGDNLDVLRKLPDQLADLIYIDPPFNTGKVQSRTQIRTIRSQEGDRVGFQGNRYRTIK 69
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+D +D + +F L+ R+LK NGT + Y + ML +
Sbjct: 70 VGTTGYSDRFDDG-----FLSFLEPRLIEAYRILKDNGTFYFHIDYREVHYCKLMLDQIF 124
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANE 176
+ ++ H+ ++ +P + + Y A
Sbjct: 125 GRECFLNEVIWAYDYGARTKLKWPPKHDNILVYVKNPDNYVFNYEDIDRIPYMAPGLVGP 184
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + N + +PTQKP +L RI+ +S+ G I+LD F GSGT
Sbjct: 185 KKAEQGKPPTDTWWHTIVPTNGSEKTGYPTQKPLGILRRIVRASSPVGGIVLDFFAGSGT 244
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
+GA +L R FI ++ D + + +KR + + ++ L + + P
Sbjct: 245 TGAACLELNRRFILVDNSVDALKVMSKRFDGISSVNWVDFDPLPYQTSFP 294
>gi|327539140|gb|EGF25770.1| adenine-specific methyltransferase [Rhodopirellula baltica WH47]
Length = 608
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/351 (21%), Positives = 126/351 (35%), Gaps = 60/351 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + I + +LPA +DL FADPP+N+ +Y D + Y
Sbjct: 14 QIHVSDCIDGMAELPAGCIDLAFADPPFNIGYTYDVY--------------DDSLESDEY 59
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ +W+ RVL +G W+ + + Q + F + ++W + +
Sbjct: 60 IQWSESWIRGVHRVLADDGAFWLAIGDEYAAELKVLAQQIGFQCRSWVIWYYTFGV--HC 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMRSDWLIPIC 189
+F +H L K + + + + AN +M D I
Sbjct: 118 KYKFTRSHAHLFHFVKDEKHFKFNADDPSVRVPSARQLVYNDRRANSKGRMPDDTWILRP 177
Query: 190 SGSERLRNKDGEKL---------------HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
D + H Q PE LL RI+ + + PGD +LDPF GS
Sbjct: 178 QDLPYGFTADEDIWYFPRVAGTFKERAGFHGCQMPEQLLGRIIRACSDPGDKVLDPFSGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
T+ AVAKKL R FI EM ++Y+ + T+R+ ++ + +
Sbjct: 238 ATTVAVAKKLGREFISFEMSEEYVSLGTERLEQIRVGDPLTGAADPLRSAPATNGKKNES 297
Query: 295 ERGLI-------------QPGQILTNAQGNISATVCADGTLISGTELGSIH 332
+ + Q G L + A DG LI IH
Sbjct: 298 KAEKLAREEEERQRWATQQVGPQLEFQFETMRA--MTDGELI--NAFREIH 344
>gi|32477674|ref|NP_870668.1| adenine-specific methyltransferase [Rhodopirellula baltica SH 1]
gi|32448228|emb|CAD77745.1| adenine-specific methyltransferase [Rhodopirellula baltica SH 1]
Length = 608
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/351 (21%), Positives = 126/351 (35%), Gaps = 60/351 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + I + +LPA +DL FADPP+N+ +Y D + Y
Sbjct: 14 QIHVSDCIDGMAELPAGCIDLAFADPPFNIGYTYDVY--------------DDSLESDEY 59
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ +W+ RVL +G W+ + + Q + F + ++W + +
Sbjct: 60 IQWSESWIRGVHRVLADDGAFWLAIGDEYAAELKVLAQQIGFQCRSWVIWYYTFGV--HC 117
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMRSDWLIPIC 189
+F +H L K + + + + AN +M D I
Sbjct: 118 KYKFTRSHAHLFHFVKDEKHFKFNADDPSVRVPSARQLVYNDRRANSKGRMPDDTWILRP 177
Query: 190 SGSERLRNKDGEKL---------------HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
D + H Q PE LL RI+ + + PGD +LDPF GS
Sbjct: 178 QDLPYGFTADEDIWYFPRVAGTFKERAGFHGCQMPEQLLGRIIRACSDPGDKVLDPFSGS 237
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
T+ AVAKKL R FI EM ++Y+ + T+R+ ++ + +
Sbjct: 238 ATTVAVAKKLGREFISFEMSEEYVSLGTERLEQIRVGDPLTGAADPLRSAPATNGKKNES 297
Query: 295 ERGLI-------------QPGQILTNAQGNISATVCADGTLISGTELGSIH 332
+ + Q G L + A DG LI IH
Sbjct: 298 KAEKLAREEEERQRWATQQVGPQLEFQFETMRA--MTDGELI--NAFREIH 344
>gi|107026752|ref|YP_624263.1| DNA methylase N-4/N-6 [Burkholderia cenocepacia AU 1054]
gi|116692056|ref|YP_837589.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170735951|ref|YP_001777211.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|105896126|gb|ABF79290.1| DNA methylase N-4/N-6 [Burkholderia cenocepacia AU 1054]
gi|116650056|gb|ABK10696.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
HI2424]
gi|169818139|gb|ACA92721.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
MC0-3]
Length = 283
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 27/261 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ LP S+DLI ADPPY L + + DK S + +
Sbjct: 35 LHNRDFLTHAAYLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDDFL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LKP+G++++ ++ I + L+ ++N+I+W + P
Sbjct: 81 AWTRGWLELAIPKLKPSGSMYIFCTWQYAPEIFSFLKTQ-LTMVNEIIWDRRVPSMGGTT 139
Query: 143 RRFQNAHETLIWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + T + K + +
Sbjct: 140 RRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWS 199
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+G
Sbjct: 200 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVG 259
Query: 251 IEMKQDYIDIATKRIASVQPL 271
E+ + Y IA +R++++
Sbjct: 260 YEINESYCAIAHERVSALAAP 280
>gi|283783020|ref|YP_003373774.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
gi|298253560|ref|ZP_06977350.1| DNA modification methylase [Gardnerella vaginalis 5-1]
gi|283442049|gb|ADB14515.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
gi|297532327|gb|EFH71215.1| DNA modification methylase [Gardnerella vaginalis 5-1]
Length = 239
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/247 (29%), Positives = 112/247 (45%), Gaps = 18/247 (7%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---WDKFSSFE 79
+ + I ++ L AKS+DLI DPPYNL + + + + WD FE
Sbjct: 6 LYNDDCIVAMDNLRAKSIDLIVTDPPYNLGSFMKTRDTNLKKMRDNFFAAAGWDDM-GFE 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ ++ RV+K G++ V + + I + + F+ +W K+NPMP
Sbjct: 65 EWKKSMESFFELSSRVMKKGGSMIVFMAIIKVETIIKLAEEYGFYYKTTGIWHKTNPMPR 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F N+ E ++ T+ N + SER K
Sbjct: 125 NMNLHFVNSTEAWVYF---------TYKTKTGTFNNGGAMFHDFIETSVTPNSERKYGK- 174
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQKPE+L+ + + PGD ILDPF GSGT+G V+K+ R+FIGIE+ +Y +
Sbjct: 175 ----HPTQKPESLMQHFVEILSNPGDNILDPFMGSGTTGVVSKRAGRNFIGIELNSEYYN 230
Query: 260 IATKRIA 266
IA RI
Sbjct: 231 IAKSRIE 237
>gi|33337325|gb|AAQ13330.1| HpyIIIM protein [Helicobacter pylori]
Length = 276
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 98/253 (38%), Positives = 136/253 (53%), Gaps = 8/253 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNGI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+N PNF
Sbjct: 80 DEFNYQWISNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNHPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253
Query: 262 TKRIASVQPLGNI 274
R + +
Sbjct: 254 MDRKSELDTRFKE 266
>gi|320535756|ref|ZP_08035839.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
gi|320147387|gb|EFW38920.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
Length = 252
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 27/252 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWD--KFSS 77
+I G+ ++++P S+DLI DPPYNL G + + ++ WD F
Sbjct: 11 LLIHGDCFQKMKEIPDTSIDLILCDPPYNLAEYSTGNMKFDWRAEINNDVAEWDLITFDP 70
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + FT R+LKP G +++ SY+ I + + + +VW K+NP+
Sbjct: 71 QKLVEDFT--------RILKPKGNIFIFTSYNLIGKYHEIFNPIFDTF-QFMVWHKTNPI 121
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
PN R F N+ E ++ ++ M + PIC G ER++N
Sbjct: 122 PNVRKSSFLNSCELIVCLWNKGHTWNFSTQNQ----------MHNFIETPICMGKERIKN 171
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPTQKP A+L I+ ++ DI+ DPF G G++G A L R F+GIE+ + Y
Sbjct: 172 PK----HPTQKPLAVLEHIIKIASNENDIVFDPFMGVGSTGHAALNLNRRFLGIEIDKKY 227
Query: 258 IDIATKRIASVQ 269
A R+ Q
Sbjct: 228 FAAACDRLTIFQ 239
>gi|301320551|gb|ADK69194.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 652
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/304 (21%), Positives = 111/304 (36%), Gaps = 31/304 (10%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++ + + L++L S+DL++ DPP+ Q L + D W +
Sbjct: 4 LNQVYNIDCLDGLKQLKDNSIDLVYLDPPFFTQKAHFLVDKTNKKY-FFNDIW---KDLK 59
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y F + L+ +RVLK G+++V I +L + I +
Sbjct: 60 EYQEFLKIRLIEIKRVLKSTGSVFVHCDKTANHIIRVLLDEIFGSINFRSEIIWVYKRWS 119
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR------------------ 181
+ ++H+ + S + K D N D ++
Sbjct: 120 NSKKGLLDSHQNIYHYSKTNDFKFNVIYTDYSLTTNIDQILQLRVKDKNNKIVYKKDKNN 179
Query: 182 ---------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
L + + +PTQKP LL RI+ T D++LDPF
Sbjct: 180 NVVFSDLKKGVPLSDVWNIPFLNPKAKERTSYPTQKPIELLERIISLVTNENDVVLDPFV 239
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
GSGTS +K L R+FIG ++ D IDI +R+ + + L K
Sbjct: 240 GSGTSVVASKLLNRNFIGFDINIDAIDITNQRLKNPIKSESNLLKNGIDKYDTKTKQQKQ 299
Query: 293 LVER 296
++ R
Sbjct: 300 ILSR 303
>gi|33337323|gb|AAQ13329.1| HpyIIIM protein [Helicobacter pylori]
Length = 277
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 98/253 (38%), Positives = 138/253 (54%), Gaps = 8/253 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK +
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGIDDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L++ FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKKQFIGIEKESEFIQIS 253
Query: 262 TKRIASVQPLGNI 274
R + +
Sbjct: 254 MNRKSELDARFKE 266
>gi|184200490|ref|YP_001854697.1| putative methyltransferase [Kocuria rhizophila DC2201]
gi|183580720|dbj|BAG29191.1| putative methyltransferase [Kocuria rhizophila DC2201]
Length = 289
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 32/270 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF------- 75
I+ G +++VLE LP +S L++ DPP+N + V F
Sbjct: 17 IVHGENLTVLESLPDESFSLVYLDPPFNTGRDQVRRTTRSVPVAHGEGDRVGFAGRSYET 76
Query: 76 ---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
SF Y F L RRVL +GTL+V Y + + +L +
Sbjct: 77 IMGSLRRYEDSFADYLGFLEPRLAHARRVLARHGTLYVHLDYREVHYVKVLLDAMFGREC 136
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----------- 175
+ RR+ H+T++ P A + +
Sbjct: 137 FLNEIVWAYDFGGRTTRRWPAKHDTILVYVKDPAAYHFNSQDVDREPYMAPGLVGPEKAA 196
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
W I S + R + +PTQKP +L RI+ +S++PGD +LD F GSG
Sbjct: 197 RGKLPTDVWWHTIVSPTGR-----EKTGYPTQKPAGVLRRIVTASSRPGDWVLDFFAGSG 251
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T+GAV+ +L R F+ ++ + +++ R+
Sbjct: 252 TTGAVSAELGRRFVCVDSNPEAVEVMRLRL 281
>gi|186473194|ref|YP_001860536.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
phymatum STM815]
gi|184195526|gb|ACC73490.1| DNA methylase N-4/N-6 domain protein [Burkholderia phymatum STM815]
Length = 305
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 68/264 (25%), Positives = 117/264 (44%), Gaps = 27/264 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + ++ LP S+DLI ADPPY L + + D S E +
Sbjct: 41 QLLNRDFLTDAANLPDGSIDLIVADPPYGLGKDYG-------------NDSD-MRSGEDF 86
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+TRAWL LKP+G+L++ ++ I L+ ++N+I+W + P
Sbjct: 87 LAWTRAWLDLAIPKLKPSGSLYIFCTWQYAPEIFVFLKRRLL-MVNEIIWDRRVPSMGGT 145
Query: 142 GRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 146 TRRFTSVHDNIGYFAVSKDYYFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 205
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + R F+
Sbjct: 206 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPPGGRVLDPFMGSGTTAVACARQTREFV 265
Query: 250 GIEMKQDYIDIATKRIASVQPLGN 273
G E+ + Y IA +R++
Sbjct: 266 GYEINESYCAIARERVSLAANPPP 289
>gi|108562518|ref|YP_626834.1| type II adenine methyltransferase [Helicobacter pylori HPAG1]
gi|107836291|gb|ABF84160.1| type II adenine methyltransferase [Helicobacter pylori HPAG1]
Length = 273
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QM W P + E++ K
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMHDVWSFPAIAPWEKVNGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L R FIGIE + ++I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLNREFIGIEKESEFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MDR 253
>gi|307726598|ref|YP_003909811.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
CCGE1003]
gi|307587123|gb|ADN60520.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1003]
Length = 303
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 27/279 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + ++ + +P S+DLI DPPY L + + D S + +
Sbjct: 39 QLLNRDFLTDVANIPDGSIDLILCDPPYGLGKDYG-------------NDSD-MRSGDDF 84
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+TR WL LKP+G+L++ ++ I + L+ ++N+I+W + P
Sbjct: 85 LAWTRGWLELAVPKLKPSGSLYIFCTWQYAPEIFSFLKTKLV-MINEIIWDRRVPSMGGT 143
Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAATKKARSRKLFEGSKWLELGYNPKDVW 203
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R++++S G +LDPF GSGT+ + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
G E+ + Y IA +R+++ V + +P V
Sbjct: 264 GYEINESYCAIARERVSAAAAAPAGRAPVKARAQRQPEV 302
>gi|83716900|ref|YP_438879.1| N-6 adenine-specific DNA methylase [Burkholderia thailandensis
E264]
gi|83650725|gb|ABC34789.1| N-6 adenine-specific DNA methylase [Burkholderia thailandensis
E264]
Length = 259
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 27/262 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI ADPPY L + + DK S + +
Sbjct: 8 LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 53
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK G+++V ++ I + L+ ++N+I+W + P
Sbjct: 54 AWTREWLELAIPKLKSTGSMYVFCTWQYAPEIFSFLKTR-LTMINEIIWDRRVPSMGGTT 112
Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + S T + K + +
Sbjct: 113 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 172
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 173 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRDFVG 232
Query: 251 IEMKQDYIDIATKRIASVQPLG 272
E+ + Y IA +R+AS+ +
Sbjct: 233 YEINESYCAIARERVASLAAVP 254
>gi|33337331|gb|AAQ13333.1| HpyIIIM protein [Helicobacter pylori]
Length = 274
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 97/253 (38%), Positives = 138/253 (54%), Gaps = 8/253 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L + +V WDK S
Sbjct: 19 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQNGKIVSVNKGDWDKEESVNDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 137 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
PTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 193 --RPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 250
Query: 262 TKRIASVQPLGNI 274
R + +
Sbjct: 251 MDRKSELDARFKE 263
>gi|300703719|ref|YP_003745321.1| site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
solanacearum CFBP2957]
gi|299071382|emb|CBJ42701.1| Site-specific DNA-methyltransferase (adenine-specific) [Ralstonia
solanacearum CFBP2957]
Length = 272
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 27/250 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I + I+ + +L SV+L+ ADPPY L + D + EA
Sbjct: 7 DGIFNEDCIAGIGQLADGSVNLVIADPPYGLGKDYG---NDSDKLSG-----------EA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A++ W+ A L NG++++ ++ + ML+ ++N+I+W + P
Sbjct: 53 YLAWSERWIEAVLPKLARNGSVYLFCTWQYAPELFVMLKRRLA-MINEIIWDRRVPSMGG 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPIC 189
R+F + H+ + + + S T + K + +
Sbjct: 112 STRKFSSVHDNIGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDV 171
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
RL +D E+ HPTQKP L+ R++++S PG ++LDPF GSGT+ + R F
Sbjct: 172 WSVSRLHRQDPERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAVACARRGRRF 231
Query: 249 IGIEMKQDYI 258
G E+ +Y
Sbjct: 232 AGFEINAEYC 241
>gi|320108417|ref|YP_004184007.1| DNA methylase N-4/N-6 domain-containing protein [Terriglobus
saanensis SP1PR4]
gi|319926938|gb|ADV84013.1| DNA methylase N-4/N-6 domain protein [Terriglobus saanensis SP1PR4]
Length = 278
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 25/270 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--------PDHSLVDAVTDSWD 73
+++ ++ L+ LP++SVDLI+ DPP+N + R D + +
Sbjct: 10 QVVHAENLGFLQTLPSESVDLIYIDPPFNTGRVQKRTRMKTVRDEAGDRTGFGGARYRTE 69
Query: 74 K-------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
K +F+ + F R L R+LKP+G L+ ML +
Sbjct: 70 KLAEAAAYEDTFDDFLGFIRPRLEEAYRILKPHGALFFHIDPRESHYCKVMLDQIFTRPC 129
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE--------DV 178
+ +R+ H+T++W + YTFN A +
Sbjct: 130 FQNEIIWAYDYGARSTKRWPGKHDTILWYTKH--PTKYTFNLAACDRIEYMAPTLVGAEK 187
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
R + + + +PTQKP +L+RI+ TKP D +LD F GSGT+G
Sbjct: 188 AARGKTPTDVWWHTIVSPTGKEKTGYPTQKPLGVLNRIVKVHTKPKDTVLDFFAGSGTTG 247
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
A K +R FI ++ ++ + I KR+A
Sbjct: 248 EAAAKNKRRFILVDQSEEAVGIMQKRLAKY 277
>gi|167820636|ref|ZP_02452316.1| DNA modification methylase RsrI [Burkholderia pseudomallei 91]
Length = 281
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 26/258 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI ADPPY L + + DK S + +
Sbjct: 31 LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 76
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK G+++V ++ I + L+ ++N+I+W + P
Sbjct: 77 AWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 135
Query: 143 RRFQNAHETLIWA--SPSPK------AKGYTFNYDALKA--ANEDVQMRSDWLIPICSGS 192
RRF + H+ + + S Y + ++ E +
Sbjct: 136 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNQDVWSV 195
Query: 193 ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 196 SRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGY 255
Query: 252 EMKQDYIDIATKRIASVQ 269
E+ + Y IA +R+AS+
Sbjct: 256 EINESYCAIARERVASLA 273
>gi|53716177|ref|YP_106283.1| N-6 adenine-specific DNA methylase [Burkholderia mallei ATCC 23344]
gi|53722718|ref|YP_111703.1| modification methylase [Burkholderia pseudomallei K96243]
gi|67640710|ref|ZP_00439507.1| DNA modification methylase RsrI [Burkholderia mallei GB8 horse 4]
gi|121596899|ref|YP_991244.1| N-6 adenine-specific DNA methylase [Burkholderia mallei SAVP1]
gi|124382898|ref|YP_001025656.1| N-6 adenine-specific DNA methylase [Burkholderia mallei NCTC 10229]
gi|126445073|ref|YP_001063438.1| DNA modification methylase RsrI [Burkholderia pseudomallei 668]
gi|126446610|ref|YP_001077731.1| DNA modification methylase RsrI [Burkholderia mallei NCTC 10247]
gi|126458257|ref|YP_001076339.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106a]
gi|134278482|ref|ZP_01765196.1| DNA modification methylase RsrI [Burkholderia pseudomallei 305]
gi|166999488|ref|ZP_02265327.1| DNA modification methylase RsrI [Burkholderia mallei PRL-20]
gi|167828995|ref|ZP_02460466.1| DNA modification methylase RsrI [Burkholderia pseudomallei 9]
gi|167850471|ref|ZP_02475979.1| DNA modification methylase RsrI [Burkholderia pseudomallei B7210]
gi|167899065|ref|ZP_02486466.1| DNA modification methylase RsrI [Burkholderia pseudomallei 7894]
gi|167915749|ref|ZP_02502840.1| DNA modification methylase RsrI [Burkholderia pseudomallei 112]
gi|167923589|ref|ZP_02510680.1| DNA modification methylase RsrI [Burkholderia pseudomallei BCC215]
gi|217422579|ref|ZP_03454082.1| DNA modification methylase RsrI [Burkholderia pseudomallei 576]
gi|226195794|ref|ZP_03791381.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pakistan
9]
gi|237508464|ref|ZP_04521179.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
MSHR346]
gi|242312128|ref|ZP_04811145.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106b]
gi|254176235|ref|ZP_04882893.1| DNA modification methylase RsrI [Burkholderia mallei ATCC 10399]
gi|254186233|ref|ZP_04892751.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pasteur
52237]
gi|254193634|ref|ZP_04900066.1| DNA modification methylase RsrI [Burkholderia pseudomallei S13]
gi|254201165|ref|ZP_04907530.1| DNA modification methylase RsrI [Burkholderia mallei FMH]
gi|254205137|ref|ZP_04911490.1| DNA modification methylase RsrI [Burkholderia mallei JHU]
gi|254265092|ref|ZP_04955957.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1710a]
gi|254301281|ref|ZP_04968725.1| DNA modification methylase RsrI [Burkholderia pseudomallei 406e]
gi|254359264|ref|ZP_04975536.1| DNA modification methylase RsrI [Burkholderia mallei 2002721280]
gi|52213132|emb|CAH39171.1| putative modification methylase [Burkholderia pseudomallei K96243]
gi|52422147|gb|AAU45717.1| N-6 adenine-specific DNA methylase [Burkholderia mallei ATCC 23344]
gi|121224697|gb|ABM48228.1| N-6 adenine-specific DNA methylase [Burkholderia mallei SAVP1]
gi|126224564|gb|ABN88069.1| DNA modification methylase RsrI [Burkholderia pseudomallei 668]
gi|126232025|gb|ABN95438.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106a]
gi|126239464|gb|ABO02576.1| DNA modification methylase RsrI [Burkholderia mallei NCTC 10247]
gi|134250266|gb|EBA50346.1| DNA modification methylase RsrI [Burkholderia pseudomallei 305]
gi|147748777|gb|EDK55852.1| DNA modification methylase RsrI [Burkholderia mallei FMH]
gi|147754723|gb|EDK61787.1| DNA modification methylase RsrI [Burkholderia mallei JHU]
gi|148028451|gb|EDK86411.1| DNA modification methylase RsrI [Burkholderia mallei 2002721280]
gi|157811304|gb|EDO88474.1| DNA modification methylase RsrI [Burkholderia pseudomallei 406e]
gi|157933919|gb|EDO89589.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pasteur
52237]
gi|160697277|gb|EDP87247.1| DNA modification methylase RsrI [Burkholderia mallei ATCC 10399]
gi|169650385|gb|EDS83078.1| DNA modification methylase RsrI [Burkholderia pseudomallei S13]
gi|217394810|gb|EEC34829.1| DNA modification methylase RsrI [Burkholderia pseudomallei 576]
gi|225932279|gb|EEH28279.1| DNA modification methylase RsrI [Burkholderia pseudomallei Pakistan
9]
gi|235000669|gb|EEP50093.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
MSHR346]
gi|238521481|gb|EEP84932.1| DNA modification methylase RsrI [Burkholderia mallei GB8 horse 4]
gi|242135367|gb|EES21770.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1106b]
gi|243064538|gb|EES46724.1| DNA modification methylase RsrI [Burkholderia mallei PRL-20]
gi|254216094|gb|EET05479.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1710a]
gi|261827031|gb|ABM99404.2| DNA modification methylase RsrI [Burkholderia mallei NCTC 10229]
Length = 282
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 27/259 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI ADPPY L + + DK S + +
Sbjct: 31 LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 76
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK G+++V ++ I + L+ ++N+I+W + P
Sbjct: 77 AWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 135
Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + S T + K + +
Sbjct: 136 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 195
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 196 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVG 255
Query: 251 IEMKQDYIDIATKRIASVQ 269
E+ + Y IA +R+AS+
Sbjct: 256 YEINESYCAIARERVASLA 274
>gi|217032871|ref|ZP_03438349.1| hypothetical protein HPB128_1g8 [Helicobacter pylori B128]
gi|216945411|gb|EEC24077.1| hypothetical protein HPB128_1g8 [Helicobacter pylori B128]
Length = 274
Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGVNGI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 137 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 INR 253
>gi|317012153|gb|ADU82761.1| DNA methylase [Helicobacter pylori Lithuania75]
Length = 372
Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/274 (22%), Positives = 104/274 (37%), Gaps = 22/274 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I + ++I +S+ L+KLP +D++ PPYN +N +
Sbjct: 105 ESYKKEFSKETNEIQSYLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQD-- 162
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D W + Y + C RVLK G + V I T
Sbjct: 163 ------ADLW------QEYFNTLFSIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKN 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DI+LDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIVLDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
GT+ VAK+L R FIGI++ + Y ++A +R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVAKERLKET 364
>gi|208434055|ref|YP_002265721.1| typeII adenine methyltransferase [Helicobacter pylori G27]
gi|208431984|gb|ACI26855.1| typeII adenine methyltransferase [Helicobacter pylori G27]
Length = 277
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 137/243 (56%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 22 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFIKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MDR 256
>gi|315586126|gb|ADU40507.1| site-specific DNA-methyltransferase (adenine-specific)
[Helicobacter pylori 35A]
Length = 276
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 134/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QM W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMHDVWSFPAIAPWEKTNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIQIS 253
Query: 262 TKR 264
R
Sbjct: 254 MNR 256
>gi|320537687|ref|ZP_08037615.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
gi|320145465|gb|EFW37153.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
Length = 228
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 35/245 (14%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G+ + L K+P +S+ I DPPY L + + F+
Sbjct: 9 LLHGDCLDFLPKIPDESIQSIITDPPYFLGMTHNSQK-------------GCFNDLAICK 55
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F +R+LKP+G ++ + + +L ++ + + P N G
Sbjct: 56 PFYEKLFKEYKRILKPDGCIYFFCDWRSYAFYYPLLDSVMQVKNLLVWKKHGRPSLNVYG 115
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
LI S K T D + + N R +GEK
Sbjct: 116 SGH-----ELIMFSGKIKKSYITNIIDDVASFNIG-----------------ARKTNGEK 153
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+HPTQKP L+ + + ST GD++LD F GSGT+G R FIG+E+ +Y +IA
Sbjct: 154 IHPTQKPIELMEKFIFDSTDEGDVVLDSFMGSGTTGIACLNTNRRFIGMEIDDNYFNIAK 213
Query: 263 KRIAS 267
R+ +
Sbjct: 214 NRLET 218
>gi|261838963|gb|ACX98728.1| typeII adenine methyltransferase [Helicobacter pylori 52]
Length = 277
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ +L + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEILPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MDR 256
>gi|317179480|dbj|BAJ57268.1| Type II restriction enzyme M protein [Helicobacter pylori F30]
Length = 276
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRVLQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKTNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MDR 256
>gi|298736964|ref|YP_003729494.1| putative adenine-specific DNA-methyltransferase [Helicobacter
pylori B8]
gi|298356158|emb|CBI67030.1| putative adenine-specific DNA-methyltransferase [Helicobacter
pylori B8]
Length = 304
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK
Sbjct: 49 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGVNGI 106
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 107 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 166
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 167 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 222
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 223 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIKIS 280
Query: 262 TKR 264
R
Sbjct: 281 INR 283
>gi|187921472|ref|YP_001890504.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
phytofirmans PsJN]
gi|187719910|gb|ACD21133.1| DNA methylase N-4/N-6 domain protein [Burkholderia phytofirmans
PsJN]
Length = 301
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 64/274 (23%), Positives = 120/274 (43%), Gaps = 27/274 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + ++ + +P S+DLI DPPY L + + D + E +
Sbjct: 38 QLLNRDFLTDVANIPDGSIDLIVCDPPYGLGKDYG-------------NDSD-MRTGEDF 83
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+TR WL LKP+G+L++ ++ I + L+ ++N+I+W + P
Sbjct: 84 LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142
Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R++++S G +LDPF GSGT+ + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
G E+ + Y IA +R+++ +R
Sbjct: 263 GYEINESYCAIARERVSAAANPPVARRVKAKTQR 296
>gi|218514040|ref|ZP_03510880.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli 8C-3]
Length = 131
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 84/109 (77%), Positives = 94/109 (86%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
W D IIKG+ +S LE LP SVD+IFADPPYNLQL G L+RPD SLVDAV D WD+F+SF
Sbjct: 23 WIDTIIKGDCVSALEALPTHSVDVIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFASF 82
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
EAYDAFTRAWLLACRRVLKP G++WVIGSYHNIFR+G LQ+LNFWILN
Sbjct: 83 EAYDAFTRAWLLACRRVLKPTGSIWVIGSYHNIFRVGATLQDLNFWILN 131
>gi|284041579|ref|YP_003391919.1| DNA methylase N-4/N-6 domain protein [Conexibacter woesei DSM
14684]
gi|283945800|gb|ADB48544.1| DNA methylase N-4/N-6 domain protein [Conexibacter woesei DSM
14684]
Length = 287
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 20/266 (7%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY--------RPDHSLVDAVT-- 69
+D ++ G+++ VL LP + D+I+ DPP+N + D +
Sbjct: 18 EDLVVHGDNLDVLPLLPDGAFDMIYIDPPFNTGKAQRRRTLVFEPDVEGDRTGFGGRRYR 77
Query: 70 ----DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
+ +F+ Y F L RR+L +GTL+ Y +L +
Sbjct: 78 SQLLQALAYGDTFDDYLGFVAPRLEHARRLLAEHGTLYFHIDYREAHYCKLLLDEIFGRD 137
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQ 179
+ R+ H+T++ +P A + Y A +
Sbjct: 138 CFLNEIIWAYDYGGKPRSRWPAKHDTILVYVRTPGAHHFDAEAVDREPYMAPGLVTPEKV 197
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
R + + N + +PTQKP ++ R++ +S++PG LD F GSGT GA
Sbjct: 198 ARGKRPTDVWWHTIVPTNGYEKTGYPTQKPAGVVRRMVAASSRPGGWCLDFFAGSGTLGA 257
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
VA L R ++ ++ + ID+ KR+
Sbjct: 258 VAAGLGRRYVLVDSHAEAIDVMRKRL 283
>gi|33337329|gb|AAQ13332.1| HpyIIIM protein [Helicobacter pylori]
Length = 274
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 134/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 19 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + +YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISRTYHNIFSLGRVLQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 193 --HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MDR 253
>gi|332672934|gb|AEE69751.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
Length = 273
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 136/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LNIQSGKIVSVNKGDWDKEYGIDDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF + +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLRRLLQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 137 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 193 --HPTQKPLALLVRLLLMASGENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MDR 253
>gi|299141019|ref|ZP_07034157.1| methyltransferase [Prevotella oris C735]
gi|298577985|gb|EFI49853.1| methyltransferase [Prevotella oris C735]
Length = 340
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 68/289 (23%), Positives = 118/289 (40%), Gaps = 42/289 (14%)
Query: 1 MSQKNSLAINENQNSIFEWK-----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
+S + + NSI + K D I+ G+ + L +P + +LI DPPYNL +
Sbjct: 36 ISGGERMLLQSKVNSIEDLKSGLFDDVIVHGDLLDCLGLIPDEYFNLIVIDPPYNLDKDF 95
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
R D + R+W L+P+G+L++ G + +
Sbjct: 96 NGNRFSAMKSAGYED-------------YLRSWFGQVCDKLRPDGSLYMCGDWKCSASMQ 142
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFN------ 167
++ ++ R + RG ++N E + +A +PK + +
Sbjct: 143 RVI-----EERLTVINRITWQREKGRGARMNWKNGMEDIWFAVKNPKDYYFNIDAVKVKR 197
Query: 168 -----------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ + + + S + HPTQKPE L +++
Sbjct: 198 RVRAPYRIEGQPKDWEQSEDGKYRFTCPSNFWDDISVPFWSMPENTEHPTQKPEKLYAKL 257
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
L++S+K GD + DPF GSGT VA+KL R F G+E+ ++Y A KR+
Sbjct: 258 LLASSKSGDRVFDPFLGSGTLAVVARKLNRKFCGVEINEEYCLWAAKRL 306
>gi|281424234|ref|ZP_06255147.1| putative DNA-methyltransferase protein [Prevotella oris F0302]
gi|281401503|gb|EFB32334.1| putative DNA-methyltransferase protein [Prevotella oris F0302]
Length = 337
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 42/289 (14%)
Query: 1 MSQKNSLAINENQNSIFEWK-----DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
+S + + NSI + K D I+ G+ + L +P + +LI DPPYNL +
Sbjct: 33 ISGGERMLLQSKVNSIEDLKSGLFDDVIVHGDLLDCLGLIPDEYFNLIVIDPPYNLDKDF 92
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
R D + R+W L+P+G L++ G + +
Sbjct: 93 NGNRFSAMKSAGYED-------------YLRSWFGQVCDKLRPDGALYMCGDWKCSASMQ 139
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFN------ 167
++ ++ R + RG ++N E + +A +PK + +
Sbjct: 140 RVI-----EERLTVINRITWQREKGRGARMNWKNGMEDIWFAVKNPKDYYFNIDAVKVKR 194
Query: 168 -----------YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ + + + S + HPTQKPE L +++
Sbjct: 195 RVRAPYRIEGQPKDWEQSEDGKYRFTCPSNFWDDISVPFWSMPENTEHPTQKPEKLYAKL 254
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
L++S+K GD + DPF GSGT VA+KL R F G+E+ ++Y A KR+
Sbjct: 255 LLASSKSGDRVFDPFLGSGTLAVVARKLNRKFCGVEINKEYCLWAAKRL 303
>gi|217034170|ref|ZP_03439589.1| hypothetical protein HP9810_886g7 [Helicobacter pylori 98-10]
gi|216943338|gb|EEC22797.1| hypothetical protein HP9810_886g7 [Helicobacter pylori 98-10]
Length = 276
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 96/253 (37%), Positives = 137/253 (54%), Gaps = 8/253 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ +L + DLIFADPPY L +G L +V WDK S
Sbjct: 22 TLYQGDCNEILPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N + QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNNKQMRDVWSFPAIAPWEKANGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKIS 253
Query: 262 TKRIASVQPLGNI 274
R + +
Sbjct: 254 MDRKSELDARFKE 266
>gi|154149830|ref|YP_001403448.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Methanoregula boonei 6A8]
gi|153998382|gb|ABS54805.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
Length = 292
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 66/277 (23%), Positives = 108/277 (38%), Gaps = 25/277 (9%)
Query: 2 SQKNSLAINENQN-SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
S+ + +N I + ++I G+++SVL +P++SVDL+ PPYN
Sbjct: 19 SKDAKAPLPSRENPEIEPFVNRIFCGDALSVLSGMPSESVDLVITSPPYNFGHAYAQDPH 78
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSY---HNIF 112
D + W+ Y A A C RVL+P G + V Y H+I
Sbjct: 79 DDTR------EWN------DYFATLNAVWTECVRVLRPGGRMAVNVQPLFSDYVPTHHII 126
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ L + N G + + + + + +
Sbjct: 127 SNQLLGLGLLWKAEFLWEKNNYNAKYTAWGSWKSPSMPYIKYTWEFVEIFDKGTHKKTGR 186
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDP 230
ED+ + SD G ++ + K HP PE L R++ + DI++DP
Sbjct: 187 R--EDIDITSDEFKEWVIGRWKIPPEHRMKEFDHPAMFPEELPRRVMKLFSYKNDIVIDP 244
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
F G+GT+ A K R FIGI++ Y D A +R+
Sbjct: 245 FNGAGTTTLAAAKCGRRFIGIDVSHQYCDTAVRRLRE 281
>gi|320103609|ref|YP_004179200.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
ATCC 43644]
gi|319750891|gb|ADV62651.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
43644]
Length = 327
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 42/268 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++I+ L +L A SVDLI ADPPYNLQ WD+F++ EAY
Sbjct: 55 LVTGDAIAWLNQLDAASVDLIVADPPYNLQKA----------------KWDRFATEEAYL 98
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
++ W+ A RRVLK G+L+V G + + + ++ G
Sbjct: 99 TWSLEWIAAARRVLKETGSLYVCGFSETLADLKRPALRWFADCRWLVWHYRNKA---NLG 155
Query: 143 RRFQNAHETLIW---------------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
R + +HE+++ Y A + D + R+ W+
Sbjct: 156 RDWGRSHESILHLRVTPAFRLRLDAVRVPYGGHTVKYPARTQARTSCFGDGRSRAPWVPH 215
Query: 188 ICSGSER--------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
R HP+QKPE L+ ++++++ D+++DPF GSGT+
Sbjct: 216 PAGAKPRDVLEYPTTCNGMGERTPHPSQKPEGLIRHLILAASDEHDLVIDPFSGSGTTVV 275
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
A++L R +IG + + Y A +R+ +
Sbjct: 276 AAQQLNRRWIGCDREPSYHAWAVRRLET 303
>gi|148655960|ref|YP_001276165.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
RS-1]
gi|148568070|gb|ABQ90215.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
Length = 460
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 48/296 (16%)
Query: 21 DKIIKGNSISVLEKLPAK----SVDLIFADPPYNLQLN---------GQLYRPDHSLVDA 67
+ +I G +++ L L A ++LI+ DPP+ ++ R
Sbjct: 46 NMLIHGENLAALTWLLANGYRQRINLIYIDPPFGAGIDRVRRIRLRGSDSARLIPVPNAE 105
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
D+WD +AY F L+A R +L +G++++ + + ++ +
Sbjct: 106 YRDTWDD----DAYLQFMYERLIALRDLLADDGSIYLHCDFRKAHLLRCLMDEVFGAERM 161
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA--------KGYTFNYDALKAANEDVQ 179
P R+F H+T++ + S + YT A ++
Sbjct: 162 LNEIIWFYPSGGDGERQFNRKHDTILLYARSDRWTFNYDQVLIPYTQQQLARFRQADE-- 219
Query: 180 MRSDWLIPICSGSERLRNKDGEKL--------------------HPTQKPEALLSRILVS 219
+ + ER++ + +PT KP ALL RI+ +
Sbjct: 220 -HGRYYWNVNPRGERVKTYLRKPGVGAYDVWTIPINAALVRDLGYPTTKPPALLDRIVRA 278
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
S++PGD++LD F GSGT+ VA++L R +I ++ I I +R+ + +
Sbjct: 279 SSRPGDLVLDCFAGSGTTAVVAQQLGRRWIACDVNPGAIQITARRLRRMPQPRDPA 334
>gi|87042330|gb|ABD16204.1| M1.NcuI methyltransferase [Moraxella cuniculi]
Length = 259
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 68/270 (25%), Positives = 103/270 (38%), Gaps = 37/270 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI N LEK+ KS+ L DPPYNL WD F
Sbjct: 4 NKIYHMNCFDFLEKIQNKSIQLAVIDPPYNLNKA----------------DWDSFDDHNE 47
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ AFT W+ L NG++++ + N I L + N I W K + M +
Sbjct: 48 FLAFTYRWIDKVLDKLDKNGSIYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSA 107
Query: 141 RGRRFQNAHETLIWASPSPKAKGYT---------------------FNYDALKAANEDVQ 179
+ R L ++ Y N
Sbjct: 108 KRRFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGQRWFPNPNGRL 167
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
W E++ K + H T KP L+ RI+ +S+ P D++LD F GSGT+
Sbjct: 168 CGEVWHFSSQRHKEKVNGKTVKLSHITPKPHDLIERIIKASSNPNDLVLDCFMGSGTTAI 227
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
VAKKL R+FIG ++ +Y++ A + ++
Sbjct: 228 VAKKLGRNFIGCDINTEYVEQANLILNQLE 257
>gi|209518946|ref|ZP_03267756.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. H160]
gi|209500598|gb|EEA00644.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. H160]
Length = 304
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 27/273 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + ++ + +P S+DLI DPPY L + + D + E +
Sbjct: 39 QLLNRDFLTDVANIPDGSIDLIVCDPPYGLGKDYG-------------NDSD-MRTGEEF 84
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+TR WL LKP G+L++ ++ I + L+ ++N+I+W + P
Sbjct: 85 LVWTRGWLELAVPKLKPTGSLYIFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGT 143
Query: 142 GRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R+++SS G +LDPF GSGT+ + +R F+
Sbjct: 204 SVSRLHRQHAERVAHPTQKPLEIVERMVLSSCPKGGRVLDPFMGSGTTAVACVRHQREFV 263
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
G E+ + Y IA +R++ T K
Sbjct: 264 GYEINESYCAIARERVSVAAMPAAPRRTRAKPK 296
>gi|238024260|ref|YP_002908492.1| DNA modification methylase [Burkholderia glumae BGR1]
gi|237878925|gb|ACR31257.1| DNA modification methylase [Burkholderia glumae BGR1]
Length = 282
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 67/252 (26%), Positives = 115/252 (45%), Gaps = 29/252 (11%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ ++ LP S+DLI ADPPY L + D + +A+ A+TR
Sbjct: 38 DFLTDAASLPDASIDLIVADPPYGLGKDYG---NDSDKLQG-----------DAHLAWTR 83
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
WL LK +G+L+V ++ I + L+ ++N+I+W + P RR+
Sbjct: 84 QWLELAIPKLKASGSLYVFCTWQYAPEIFSFLKTR-LTMVNEIIWDRRVPSMGGTTRRYT 142
Query: 147 NAHETLIWASPSPKAKGY------------TFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ H+ + + + K+ + T + K + + R
Sbjct: 143 SVHDNIGFFA-VSKSYYFDLDPVRIPYDAETKKARSRKLFEGSKWLELGYNPKDVWSISR 201
Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
L + E++ HPTQKP L+ R+++SS PG ++LDPF GSGT+ + R F+G E+
Sbjct: 202 LHRQHAERVDHPTQKPLELVERMVLSSCPPGGVVLDPFMGSGTTAVACARHGRGFVGYEI 261
Query: 254 KQDYIDIATKRI 265
+ Y IA +R+
Sbjct: 262 NESYCAIARERV 273
>gi|33337333|gb|AAQ13334.1| HpyIIIM protein [Helicobacter pylori]
Length = 268
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNCQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MNR 253
>gi|114566374|ref|YP_753528.1| adenine-specific DNA-methyltransferase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337309|gb|ABI68157.1| Site-specific DNA-methyltransferase (adenine-specific)
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 459
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 59/293 (20%), Positives = 105/293 (35%), Gaps = 29/293 (9%)
Query: 20 KDKIIKGNSISVLEKLP----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---- 71
++I +G++++VL L A +DLI+ DPPY N
Sbjct: 59 LNRIYQGDNLAVLNLLLQQGFAGKIDLIYIDPPYLSNSNYNSRISVEHQGQKYFIERLAF 118
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D+ +Y L + +L G+++V +H+ + +L +
Sbjct: 119 KDRDEDLVSYLQQIYKRLKIMKMLLSEQGSIFVHLDWHSSHYVKILLDEIFSSDNFINEI 178
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV------------- 178
+ R F H+ ++W YTFN +
Sbjct: 179 IWCYGGGSGTRRHFHRKHDQILWYGKGKD---YTFNPQYRPYTEGTLQRGLTRVKGKKYT 235
Query: 179 -QMRSDWLIPICSGSERL--RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
L ++ PTQKP ALL RI+ S++ PGD++ D + GSG
Sbjct: 236 LHKEGALLQDWWVDINKILSPTARENLKFPTQKPLALLKRIIASASNPGDLVADFYAGSG 295
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI--ASVQPLGNIELTVLTGKRTEP 286
T+ +++ RS+I + + I + R+ +P EL + +P
Sbjct: 296 TTAEACEEMNRSWISCDCSKLAIQSSRYRLLRKKARPFQITELIEEDNEEQKP 348
>gi|296159696|ref|ZP_06842519.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
gi|295890140|gb|EFG69935.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
Length = 301
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 64/274 (23%), Positives = 120/274 (43%), Gaps = 27/274 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + +S + +P S+DLI DPPY L + + D + + +
Sbjct: 38 QLLNRDFLSDVANIPDGSIDLILCDPPYGLGKDYG-------------NDSD-MRTGDDF 83
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+TR WL LKP+G+L++ ++ I + L+ ++N+I+W + P
Sbjct: 84 LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142
Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R++++S G +LDPF GSGT+ + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
G E+ + Y IA +R+++ +R
Sbjct: 263 GYEINESYCAIARERVSAAAAPPVARRVKAKTQR 296
>gi|323529195|ref|YP_004231347.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323386197|gb|ADX58287.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1001]
Length = 303
Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats.
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 30/277 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + ++ + +P S+DLI DPPY L + + D + + +
Sbjct: 39 QLLNRDFLTDVANIPDGSIDLILCDPPYGLGKDYG-------------NDSD-MRTGDDF 84
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+TR WL LKP+G+L++ ++ I + L+ ++N+I+W + P
Sbjct: 85 LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKTRLL-MINEIIWDRRVPSMGGT 143
Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAATKKARSRKLFEGSKWLELGYNPKDVW 203
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R++++S G +LDPF GSGT+ + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
G E+ + Y IA +R+++ + K P
Sbjct: 264 GYEINESYCAIARERVSAAVSAP---VKRRPVKVKAP 297
>gi|76819441|ref|YP_335927.1| DNA methylase [Burkholderia pseudomallei 1710b]
gi|76583914|gb|ABA53388.1| DNA methylase [Burkholderia pseudomallei 1710b]
Length = 258
Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 27/259 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI ADPPY L + + DK S + +
Sbjct: 7 LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 52
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK G+++V ++ I + L+ ++N+I+W + P
Sbjct: 53 AWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 111
Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + S T + K + +
Sbjct: 112 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 171
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 172 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVG 231
Query: 251 IEMKQDYIDIATKRIASVQ 269
E+ + Y IA +R+AS+
Sbjct: 232 YEINESYCAIARERVASLA 250
>gi|317011937|gb|ADU82545.1| type II adenine methyltransferase [Helicobacter pylori Lithuania75]
Length = 273
Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGINGI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MDR 253
>gi|288931950|ref|YP_003436010.1| DNA methylase N-4/N-6 domain protein [Ferroglobus placidus DSM
10642]
gi|288894198|gb|ADC65735.1| DNA methylase N-4/N-6 domain protein [Ferroglobus placidus DSM
10642]
Length = 303
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 46/275 (16%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
E D II G++ VL+ LP + L+ PPYN+ D+ +
Sbjct: 50 ELLDNIILGDAREVLKNLPKNCIHLMVTSPPYNVGKEY-----------------DEDLT 92
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM---------LQNLNFWILND 128
Y F + RVL G V + N+ R + + + F +
Sbjct: 93 LGEYLDFIEEVMKEVYRVLVWGGR--VCFNVANLGRKPYIPLHAYLIERFEKIGFLFRGE 150
Query: 129 IVWRKSNPMPNFRGRRFQNA----------HETLIWASPSPKAKGYTFNYDALKAANEDV 178
I+W K + + HE +I S + N + + E +
Sbjct: 151 IIWDKGDAVSGASTAWGTWQSAVNPVLRDQHEYIIVLSKGSFKRE-KGNKEDTISREEFL 209
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ ++R+ HP PE L R + T GD++LDPF GSGT+
Sbjct: 210 EFTKSVWKFPPESAKRV-------GHPAPFPEELPYRCIQLFTFKGDVVLDPFVGSGTTC 262
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
A K R FIGI++++ Y++IA +RI ++
Sbjct: 263 VAALKTGRHFIGIDIEEKYVEIAKRRIKEIKATKK 297
>gi|260174737|ref|ZP_05761149.1| cell cycle regulated site-specific DNA-methyltransferase protein
[Bacteroides sp. D2]
gi|315922997|ref|ZP_07919237.1| modification methylase HinfI [Bacteroides sp. D2]
gi|313696872|gb|EFS33707.1| modification methylase HinfI [Bacteroides sp. D2]
Length = 224
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 35/249 (14%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+++P SVD I DPPY L + + F
Sbjct: 2 ITNKIYNEDCLEALKRVPDNSVDCIITDPPYFLGMTHNGQK-------------GSFKDL 48
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
F R L RV KP ++ + + ++++ P
Sbjct: 49 SICKPFYRDLFLEFNRVKKPGACVYFFTDWR--GYAFYYPLFDLYIGASNMIVWNKQSGP 106
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
G + HE +++ + G T D +++ +
Sbjct: 107 ---GNHYAFIHELILFHCGKGVSIGATNIIDNIRSFASG-----------------AKLV 146
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+GEK+HPTQKP AL+ +++ STKPGD+ILD F GSGT+ A + R+F+ +E + Y
Sbjct: 147 EGEKVHPTQKPVALIRKLIEDSTKPGDLILDTFGGSGTTAVAAIESGRNFVLMEQDEIYY 206
Query: 259 DIATKRIAS 267
A KRI
Sbjct: 207 FTAQKRIKD 215
>gi|166368612|ref|YP_001660885.1| putative methyltransferase [Microcystis aeruginosa NIES-843]
gi|166090985|dbj|BAG05693.1| DNA-methyltransferase [Microcystis aeruginosa NIES-843]
Length = 295
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 36/293 (12%)
Query: 23 IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I G+S+ +L + + SVDLIF DPPYN+ D +DK+ S Y
Sbjct: 12 IFHGDSLPILSSEIASNSVDLIFLDPPYNIG-------------KHFADFYDKWESENDY 58
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ L C R+LKP GTL+V+ S + L+ + I S+ +
Sbjct: 59 INWANQILDQCLRILKPQGTLYVMASTQAMPYFDLYLRQKMTILSRIIWHYDSSGV--QA 116
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSG 191
+ F + +E ++ YTFN +K + + S + G
Sbjct: 117 TKYFGSMYEPILHCVK--DKNNYTFNSKDIKIEAKTGAKRKLIDYRKAIPSQYNTEKVPG 174
Query: 192 S----ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ R+R + D + HP+QKPE+LL RI+++ST I+LDPF G+ T+ AVAK+L R
Sbjct: 175 NVWYFPRVRYRMDEYENHPSQKPESLLERIILASTDKSGIVLDPFAGTFTAAAVAKRLGR 234
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT---GKRTEPRVAFNLLVER 296
I IE +++Y+ I +RI Q +L +++E + N + E
Sbjct: 235 ISISIESQEEYLKIGLRRILGWQEYKEEKLLPPQKSYSRKSENKQESNFVQES 287
>gi|172036749|ref|YP_001803250.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
gi|171698203|gb|ACB51184.1| probable DNA-methyltransferase [Cyanothece sp. ATCC 51142]
Length = 284
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 76/274 (27%), Positives = 130/274 (47%), Gaps = 29/274 (10%)
Query: 20 KDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ I+ G+SI +L +++ +S+ LIF DPPYN+ + DK+ +
Sbjct: 9 EHIILFGDSIKLLDQEIQDESIHLIFVDPPYNIGKK-------------YANFIDKWPTE 55
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E Y + +WL C + L P G+++++ S I + L+ + I S+ +
Sbjct: 56 ENYLLWCYSWLELCFKKLHPEGSIYLMASTQTIPYLDIYLRKHIHILSRIIWHYDSSGV- 114
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------------MRSDWLI 186
F + +E +I+ +PK+ + + ++A + S +
Sbjct: 115 -QAKNYFGSLYEPIIYGVKNPKSYTFNRDDIKVEAKTGSKRKLIDYRKAIPKVYNSHKVP 173
Query: 187 PICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
R+R + E + HPTQKPEALL RI+++S+ GD ILDPF G+ T+ AVA+K+
Sbjct: 174 GNVWYFPRVRYRMEEYEKHPTQKPEALLKRIILASSNVGDTILDPFAGTFTTSAVAQKVG 233
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
R IGIE+++DYI I +R+ L
Sbjct: 234 RKSIGIEIEEDYIKIGLRRLGICTHYNGNLLQKP 267
>gi|308183890|ref|YP_003928023.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
SJM180]
gi|308059810|gb|ADO01706.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
SJM180]
Length = 273
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNHQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 137 CRYLTHSAEQIIWARKSFK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKANGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MNR 253
>gi|88602175|ref|YP_502353.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
gi|88187637|gb|ABD40634.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
Length = 451
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/335 (23%), Positives = 120/335 (35%), Gaps = 34/335 (10%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
++ NS + ++ E+ D+II G+S +L +LP +DLI PPYN L
Sbjct: 136 AEGNSFS-HQTHPLPDEYLDQIICGDSEEILSRLPENCIDLIITSPPYNFGLEYSS---- 190
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGT 116
+ W +AY RVLK G V Y + + +
Sbjct: 191 ----SGDSAHW------QAYLDKLYRVFAQGIRVLKYGGRFIVNVQPLFSDYIPLHHLIS 240
Query: 117 MLQNLNFWILNDIVWRKSN---PMPNFRGRRFQNAHETL---IWASPSPKAKGYTFNYDA 170
I + + N G + L + +
Sbjct: 241 SFFMNQKMIWKGEILWEKNNYNCKYTSWGSWKSPSSPYLKYTWEFIEIFCKGTLKKSGKS 300
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
A D + +S + G ER HP PE L+ R L + GDIILDP
Sbjct: 301 EDADISDEEFKSWVVAKWSIGPERRMKHFN---HPAMFPEELVERCLKLFSFQGDIILDP 357
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
F G+GT+ AVA + R FIG+++ +Y D A +R+ P + K +E V
Sbjct: 358 FNGAGTTTAVAARTNRHFIGLDISSEYCDCARERL-LQIPASSDRKKEKQKKTSEKSVLT 416
Query: 291 NLLV---ERGLIQPGQILTNAQGNISA-TVCADGT 321
+ RG ++LT +DG+
Sbjct: 417 SSFETPKRRGRPPKQRVLTEESSQHHLDRFYSDGS 451
>gi|281412388|ref|YP_003346467.1| DNA methylase N-4/N-6 domain protein [Thermotoga naphthophila
RKU-10]
gi|281373491|gb|ADA67053.1| DNA methylase N-4/N-6 domain protein [Thermotoga naphthophila
RKU-10]
Length = 308
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/269 (20%), Positives = 99/269 (36%), Gaps = 39/269 (14%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
DK+I+G++ VL+K+P +S+ L+ PPYN+ D+
Sbjct: 51 ENLLDKVIEGDAREVLKKIPDRSIHLMVTSPPYNVGKEY-----------------DEDM 93
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------------HNIFRIGTMLQNLN 122
+ + Y F + R+L G + + H +IG +++
Sbjct: 94 TLDEYLEFIEEVMKEVYRILVWGGRVCFNVANLGRKPYIPLHAYLIHLFEKIGFLIRGEI 153
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
W + V S ++ + HE +I S + + + +
Sbjct: 154 IWDKGEAVSGSSTAWGSWMSPVNPVLRDQHEYIIVMSKGDLKRRKPSDREVESTITREEF 213
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ E + HP PE L R + T GD++LDPF G GT+
Sbjct: 214 LE-FTRSVWKFPPESAK----RVGHPAPFPEELPYRCIQLYTFKGDVVLDPFAGVGTTCV 268
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASV 268
K R F+GIE+ +Y+ A +R+ +
Sbjct: 269 ATVKTGRHFVGIEINPEYVKKAEERVKDI 297
>gi|254778814|ref|YP_003056919.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
B38]
gi|254000725|emb|CAX28645.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
B38]
Length = 277
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 99/243 (40%), Positives = 137/243 (56%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 22 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINGI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 140 CRYLTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMRDVWSFPAITPWEKVNGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDGNSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFIKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MNR 256
>gi|116671332|ref|YP_832265.1| site-specific DNA-methyltransferase (adenine-specific)
[Arthrobacter sp. FB24]
gi|116611441|gb|ABK04165.1| Site-specific DNA-methyltransferase (adenine-specific)
[Arthrobacter sp. FB24]
Length = 290
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 22/268 (8%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------NGQLYRPDHSLV 65
+ ++ ++ L LP + LI+ DPP+N G
Sbjct: 12 NLVVHADNAEYLPTLPDGAFTLIYVDPPFNTGRAQSRQQTTMVRNADGGGDRVGFKGRSY 71
Query: 66 DAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
D + + K+ F Y +F L+ R+L +GTL++ Y + ML +
Sbjct: 72 DTIKGALHKYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLDAIFGR 131
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDV 178
+ R+ H+ ++ +P + Y A +
Sbjct: 132 ECFLNEIIWAYDYGARAKFRWPTKHDNILVYVKNPAKYHFNSAEVDREPYMAPGLVTPEK 191
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + + + +PTQKPE L+ R++ +S++PGD LD F GSGT G
Sbjct: 192 RELGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGLIRRVVAASSRPGDWCLDFFAGSGTLG 251
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
AVA KL R F+ ++ Q I++ +KR++
Sbjct: 252 AVAAKLDRKFVCVDQNQPAIEVMSKRLS 279
>gi|210134296|ref|YP_002300735.1| type II R-M system methyltransferase [Helicobacter pylori P12]
gi|210132264|gb|ACJ07255.1| type II R-M system methyltransferase [Helicobacter pylori P12]
Length = 282
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK
Sbjct: 22 TLYQGDCNEVLSQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEDGINGI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N + QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNNKQMRDVWSFPAIAPWEKANGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + ++I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDENSLIGDPFSGSSTTGIAANLLKREFIGIEKESEFIKIS 253
Query: 262 TKR 264
R
Sbjct: 254 INR 256
>gi|91777257|ref|YP_552465.1| putative modification methylase [Burkholderia xenovorans LB400]
gi|91689917|gb|ABE33115.1| Putative modification methylase [Burkholderia xenovorans LB400]
Length = 301
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/274 (22%), Positives = 120/274 (43%), Gaps = 27/274 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + +S + +P S+DLI DPPY L + + D + + +
Sbjct: 38 QLLNRDFLSDVANIPDGSIDLILCDPPYGLGKDYG-------------NDSD-MRTGDDF 83
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++TR WL LKP+G+L++ ++ I + L+ ++N+I+W + P
Sbjct: 84 LSWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 142
Query: 142 GRRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 143 VRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAATKKARSRKLFEGSKWLEVGYNPKDVW 202
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R++++S G +LDPF GSGT+ + +R F+
Sbjct: 203 SVSRLHRQHAERVAHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 262
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
G E+ + Y IA +R+++ +R
Sbjct: 263 GYEINESYCAIARERVSAAAAPPVARRVKAKTQR 296
>gi|295700770|ref|YP_003608663.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
gi|295439983|gb|ADG19152.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
Length = 304
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 27/257 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + ++ + +P S+DLI DPPY L + + D + E +
Sbjct: 39 QLLNRDFLTDVANIPDGSIDLIVCDPPYGLGKDYG-------------NDSD-MRTGEEF 84
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+TR WL LKP+G+L++ ++ I + L+ ++N+I+W + P
Sbjct: 85 LVWTRGWLELAVPKLKPSGSLYIFCTWQYAPEIFSFLKTKLV-MVNEIIWDRRVPSMGGT 143
Query: 142 GRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYFFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R+++SS G +LDPF GSGT+ + +R F+
Sbjct: 204 SVSRLHRQHAERVAHPTQKPLEIVERMVLSSCPKGGRVLDPFMGSGTTAVACVRHQREFV 263
Query: 250 GIEMKQDYIDIATKRIA 266
G E+ + Y IA +R++
Sbjct: 264 GYEINESYCAIARERVS 280
>gi|237721554|ref|ZP_04552035.1| adenine methyltransferase [Bacteroides sp. 2_2_4]
gi|229449350|gb|EEO55141.1| adenine methyltransferase [Bacteroides sp. 2_2_4]
Length = 224
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 35/249 (14%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
++I + + L+++P SVD I DPPY L + + F
Sbjct: 2 ITNQIYNEDCLEALKRVPDNSVDCIITDPPYFLGMTHNGQK-------------GSFKDL 48
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
F R L RV KP ++ + + ++++ P
Sbjct: 49 SICKPFYRDLFLEFNRVKKPGACVYFFTDWR--GYAFYYPLFDLYLGASNMIVWNKQSGP 106
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
G + HE +++ + G T D +++ +
Sbjct: 107 ---GNHYAFIHELILFHCGKGVSIGATNIIDNIRSFASG-----------------AKLV 146
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+GEK+HPTQKP AL+ +++ STKPGD+ILD F GSGT+ A + R+F+ +E + Y
Sbjct: 147 EGEKIHPTQKPVALIRKLIEDSTKPGDLILDTFGGSGTTAVAAIESGRNFVLMEQDEIYY 206
Query: 259 DIATKRIAS 267
A KRI
Sbjct: 207 FTAQKRIKD 215
>gi|109947551|ref|YP_664779.1| hypothetical protein Hac_1016 [Helicobacter acinonychis str.
Sheeba]
gi|109714772|emb|CAJ99780.1| unnamed protein product [Helicobacter acinonychis str. Sheeba]
Length = 374
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I + ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ETYKKEFSKETNEIQSYLNQIYCADSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDAN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNTLFAIFTECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
+I + ++W+ N+ + A + + + E
Sbjct: 211 SFIDSGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKN 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DIILDPF G+
Sbjct: 271 NIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVAKARLKE 363
>gi|17231903|ref|NP_488451.1| putative methyltransferase [Nostoc sp. PCC 7120]
gi|17133547|dbj|BAB76110.1| DNA-methyltransferase [Nostoc sp. PCC 7120]
Length = 295
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 46/300 (15%)
Query: 21 DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ G+++++L +P++SVDLIF DPPYN+ ++ DK+ S E
Sbjct: 10 HILFHGDALNILSSNIPSESVDLIFIDPPYNIG-------------KHFSNFHDKWESEE 56
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y + WL C RVLK +GT++V+ S + L+ + + +
Sbjct: 57 EYANWAYKWLDECIRVLKSHGTIYVMTSTQAMPYFDIYLRQKLTILSR--IVWHYDSSGV 114
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALK--------------------AANEDVQ 179
+ F + +E ++ Y FN + +K N +
Sbjct: 115 QATKYFGSMYEPILHCVK--NKSNYIFNSEEIKIEAKTGAQRKLIDYRKAVPAPYNTEKV 172
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ W + HP+QKPE+L+ RI++SS+ ++LDPF G+ T +
Sbjct: 173 PGNVWYFSRVRY-----RMPEYENHPSQKPESLIERIILSSSNEDSLVLDPFAGTFTVAS 227
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG---KRTEPRVAFNLLVER 296
VAK+L R I IE +++Y+ I +R+ + +L+ R + + + L +
Sbjct: 228 VAKRLGRKSISIESQEEYLKIGLRRVLGWEEYKGEQLSPPIKTHISRNKSHQSLDSLQQS 287
>gi|170691068|ref|ZP_02882234.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
gi|170144317|gb|EDT12479.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
Length = 303
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 27/257 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + ++ + +P S+DLI DPPY L + + D + + +
Sbjct: 39 QLLNRDFLTDVANIPDASIDLILCDPPYGLGKDYG-------------NDSD-MRTGDDF 84
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+TR WL LKP+G+L++ ++ I + L+ ++N+I+W + P
Sbjct: 85 LAWTRGWLELAIPKLKPSGSLYIFCTWQYAPEIFSFLKT-KLTMINEIIWDRRVPSMGGT 143
Query: 142 GRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAANEDVQMRSDWLIPICS 190
RRF + H+ + + + S T + K + +
Sbjct: 144 TRRFTSVHDNIGFFAVSKDYYFDLDPVRIPYDAVTKKARSRKLFEGSKWLELGYNPKDVW 203
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
RL + E++ HPTQKP ++ R++++S G +LDPF GSGT+ + +R F+
Sbjct: 204 SVSRLHRQHAERVDHPTQKPLEIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFV 263
Query: 250 GIEMKQDYIDIATKRIA 266
G E+ + Y IA +R++
Sbjct: 264 GYEINESYCAIARERVS 280
>gi|149174979|ref|ZP_01853603.1| adenine-specific methyltransferase [Planctomyces maris DSM 8797]
gi|148846316|gb|EDL60655.1| adenine-specific methyltransferase [Planctomyces maris DSM 8797]
Length = 306
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 72/291 (24%), Positives = 116/291 (39%), Gaps = 42/291 (14%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++I + I+ +++L A+S+DL FADPP+N+ Y D+
Sbjct: 1 MTKINQIHIQDCIAGMQELEAESIDLAFADPPFNIGYEYDQY-------------EDRLE 47
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E Y + WL R+LKP+GT W+ + M+Q V
Sbjct: 48 S-EQYLDWCNLWLKEVVRLLKPDGTFWLAIGDEYAAELKVMMQRELGLTCRSWVIWYYTF 106
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFN-------------------------YDAL 171
N + + +H L + PK + + D
Sbjct: 107 GVNCKNKF-SRSHAHLFYMVKDPKQFTFNADDPAIRIPSARQLVYGDKRANPKGRLPDDT 165
Query: 172 KAANEDVQMRSDWLIPICSGSERLRN--KDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
S R+ K+ + H Q PE LL RI+ + + P +++LD
Sbjct: 166 WILRPQDIPESFQSEEDTWYFPRINGTFKERQGWHGCQMPEQLLGRIIRACSHPEEVVLD 225
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
PF GSGT+ AVAKKL R F+G E+ ++Y A +R+A ++P ++ T
Sbjct: 226 PFSGSGTTLAVAKKLERQFVGFELSEEYGARAQQRLAEIKPGQPLDGTENP 276
>gi|325564297|gb|ADZ31432.1| M.DraI [Deinococcus radiophilus]
Length = 328
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 66/260 (25%), Positives = 102/260 (39%), Gaps = 27/260 (10%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++KII + L+ LP VDL+ DPPYNL D E
Sbjct: 40 RNKIINQDLFDCLDNLPDAFVDLMIIDPPYNLDKVYA-----GKKFSQTDD--------E 86
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y + +WL R+LKP+ T+++ + + I ++ R+
Sbjct: 87 TYKEWVDSWLSRLIRLLKPDATVYICCDWQSSNVIHSVASKYLKIRSRITWEREKGRGSK 146
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL---- 195
+ + A D + G RL
Sbjct: 147 DNWKNCSEDIWYCTVGKKYFFDVEAVKLMKRVIAPYRDGDGKPKDWSEKAEGKYRLTHPS 206
Query: 196 ----------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ HPTQKPE L+++++VSS+K GD+I DPF GSGTS AKKL
Sbjct: 207 NLWTDISIPFWSMPENTDHPTQKPEKLIAKLIVSSSKKGDMIFDPFMGSGTSCVTAKKLG 266
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R+++GIE+ ++Y +A R+
Sbjct: 267 RNYLGIEISEEYCKMAAARL 286
>gi|224538890|ref|ZP_03679429.1| hypothetical protein BACCELL_03786 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519497|gb|EEF88602.1| hypothetical protein BACCELL_03786 [Bacteroides cellulosilyticus
DSM 14838]
Length = 262
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 70/260 (26%), Positives = 117/260 (45%), Gaps = 13/260 (5%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
E+ +KI + ++ + +LP KSV L+ PPYN+ + LV++ +
Sbjct: 1 MEYTNKIFNHSCLN-MSELPDKSVSLMVTSPPYNINIEYGNKWDKGKLVESKGKKYIDNL 59
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----NIFRIGTMLQNLNFWILNDIVWR 132
E Y + +RVLK +G +W I +++ L +I+
Sbjct: 60 EEEEYRTMLSVVIEETKRVLKDDGEIWFNIKNRYKNEEIIPPFWVMEFFKDMYLKNIIIW 119
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIP 187
+ + R +E + + + K YTFN + AL + + +
Sbjct: 120 NFDWGGSTNKRFCSR-YEYVFFFTK--KKGDYTFNLEDVKIPALNYRPDRYKSQLKNPTD 176
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + S N HP Q PE L+ RI+ T PGD++LDPF GSGT+ VAKKL R+
Sbjct: 177 VWNISLVSGNSPERTEHPAQYPEELIERIIKVGTNPGDLVLDPFMGSGTTAVVAKKLGRN 236
Query: 248 FIGIEMKQDYIDIATKRIAS 267
++G E++ D+I IA R+ +
Sbjct: 237 YVGYEIEPDFIKIAENRLNN 256
>gi|108562739|ref|YP_627055.1| DNA methylase [Helicobacter pylori HPAG1]
gi|107836512|gb|ABF84381.1| DNA methylase [Helicobacter pylori HPAG1]
Length = 369
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 101/273 (36%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNALFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNSLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DI+LDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIVLDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y + A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEAARARLKE 363
>gi|299136441|ref|ZP_07029624.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
gi|298600956|gb|EFI57111.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
Length = 278
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 63/278 (22%), Positives = 109/278 (39%), Gaps = 35/278 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW------- 72
++I+ +++ L LP SV LI+ DPP+N + R DA
Sbjct: 1 MNRILHRENLTALRSLPDASVQLIYIDPPFNTGTTQRRARMKTVRDDAGDRIGFGGKRYR 60
Query: 73 --------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF- 123
+ F+ Y F R ++ RVL G+L+ + ML +
Sbjct: 61 TEKLAIAPNYTDRFDDYLGFLRPRMIEAHRVLSATGSLFFHVDPREVHYCKIMLDEVFTT 120
Query: 124 -------WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
N+I+W + + + H+ ++W + PK YTFN +A
Sbjct: 121 PGVSGRACFQNEIIWAYDYGARSTKR--WPAKHDNILWYTKDPK--DYTFNLEASDRIPY 176
Query: 177 --------DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ R + + + +PTQKP +L RI+ + P D +L
Sbjct: 177 MAPGLVGAEKARRGKTPTDVWWHTIVSPTGKEKTGYPTQKPLGILERIVRVHSNPDDTVL 236
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
D F GSGT+G A + RS+I ++ ++ + + KR+
Sbjct: 237 DFFAGSGTTGLAAARNGRSYILVDESKEAVTLMKKRLK 274
>gi|119487543|ref|ZP_01621153.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
gi|119455712|gb|EAW36848.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
Length = 291
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 100/268 (37%), Gaps = 41/268 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I +G+ + ++ +LP L PPYN+ + S E Y
Sbjct: 23 LIYQGDCLKLMNQLPEGYFSLTVTSPPYNIGKEYESVL-----------------SVEDY 65
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ W+ R +G W+ Y ++ + + + N+
Sbjct: 66 IAWMVEWIAQVYRCTSRDGAFWLNLGYLSLPHQAKAIPIPYLIWDKVPFYLIQEIVWNYS 125
Query: 142 GR-----RFQNAHETLIWASPSPKAKGYTFNYDALKAAN----------------EDVQM 180
F +E +W A Y FN D ++ N +
Sbjct: 126 AGVAGKLFFSPRNEKFLWYVK--DANHYIFNLDDVRDPNVKYPHQKKNGKLKCNTKGKNP 183
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
W IP + + R+ HP Q P L+SRI+++S+ GDI+ DPF GSG++
Sbjct: 184 TDVWQIPKVTSGKN-RSSKERTSHPAQFPIQLVSRIILASSNLGDIVFDPFLGSGSTAEA 242
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
A + R IG E+ YID+A KRI +
Sbjct: 243 AIRNGRKIIGFEINDLYIDMAIKRIKTF 270
>gi|126658932|ref|ZP_01730074.1| DNA methylase N-4/N-6 [Cyanothece sp. CCY0110]
gi|126619730|gb|EAZ90457.1| DNA methylase N-4/N-6 [Cyanothece sp. CCY0110]
Length = 367
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 46/295 (15%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
N + + ++I G+ +++L +LP + VDL+ + PPYNL + +
Sbjct: 2 NSSYLNLPLNQIFLGDCLALLSQLPNECVDLVISSPPYNLGKEYEAKKA----------- 50
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHN-------IFRIGTMLQNLNF 123
+ Y A L C R+LK G+ W +G+Y N R +L++
Sbjct: 51 ------LDNYLAEQTLVLQECSRILKKTGSIFWQVGAYSNQGSLIPLDIRFFPILESCGL 104
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE------- 176
N I+W + + + +F HET++W + + YTFN DA++ +
Sbjct: 105 IPRNRIIWVRQHGL--HAQNKFSCRHETILWFTK---SPKYTFNLDAIRIPQKYQNKKYY 159
Query: 177 --------DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ I N + + +HP Q PE L++RI++++T DII
Sbjct: 160 KGNKKGKLSCNPKGKNPGDIWLFRNVKHNHEEQTIHPCQFPEDLVARIILATTNSNDIIF 219
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
DP+ GSGT V+K +R FIG E+++ Y DIA +R+ +P L R
Sbjct: 220 DPYLGSGTVAVVSKNYKRYFIGSEIEEKYYDIALRRLEE-KPDTKNYFPNLKTLR 273
>gi|1171049|sp|P14243|MTC9_CITFR RecName: Full=Modification methylase Cfr9I; Short=M.Cfr9I; AltName:
Full=N(4)- cytosine-specific methyltransferase Cfr9I
gi|40464|emb|CAA34887.1| DNA (Cytosine-4)-Methyltransferase [Citrobacter freundii]
Length = 300
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 57/282 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+++SVL +LP+ SV I PPY + + + SS +
Sbjct: 27 TLFEGDALSVLRRLPSGSVRCIVTSPPYWGLRDY-----------GIDEQIGLESSMTQF 75
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
+RVL +GTLWV IG +
Sbjct: 76 LNRLVTIFSEAKRVLTDDGTLWVNIGDGYTSGNRGYRAPDKKNPARAMAVRPDTPEGLKP 135
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+R+ LQ +++ +DIVW K N MP R +HE L + ++ Y
Sbjct: 136 KDLIGIPWRLAFALQEDGWYLRSDIVWNKPNAMPESVKDRPTRSHEFLFMLTK---SEKY 192
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
++++A++ + R+ + K H P L+ +++STKPG
Sbjct: 193 YYDWEAVREEKDSGGFRNRRT------VWNVNTKPFAGAHFATFPTELIRPCILASTKPG 246
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
D +LDPFFGSGT G V ++ R ++GIE+ +Y+DIA R+
Sbjct: 247 DYVLDPFFGSGTVGVVCQQEDRQYVGIELNPEYVDIAVNRLQ 288
>gi|308182268|ref|YP_003926395.1| type II adenine methyltransferase [Helicobacter pylori PeCan4]
gi|308064453|gb|ADO06345.1| type II adenine methyltransferase [Helicobacter pylori PeCan4]
Length = 273
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKTNGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MNR 253
>gi|163782845|ref|ZP_02177841.1| DNA modification methylase-like protein [Hydrogenivirga sp.
128-5-R1-1]
gi|159881966|gb|EDP75474.1| DNA modification methylase-like protein [Hydrogenivirga sp.
128-5-R1-1]
Length = 281
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 59/284 (20%), Positives = 115/284 (40%), Gaps = 21/284 (7%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ I ++ + +I G+ + VL+++P++S+DL PPYN + + + D + ++ D+
Sbjct: 2 SDIAKFLNGVICGDVLEVLKQIPSESIDLGITSPPYNKKGKNKGWLVDRVVYESYGDNMK 61
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ E Y + L RV+K G+ + H I + + W+ +
Sbjct: 62 E----EEYQEWQVEVLNKLYRVIKEGGSFFYN---HKIRWERGKMIHPYEWVSKTKWAVR 114
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ N + + + + E+++ +
Sbjct: 115 QEIVWNRKLAGNIRG----WRFWQVDERIYWLYKPKNGNLIGEELKPEHAKFSSVW---- 166
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+R + G K HP P L +RI++S I+LDPF G GT+ AK L ++GI+
Sbjct: 167 EIRPESGFKEHPAPFPIELPTRIILSILDDKKGIVLDPFCGIGTTLVSAKLLGHDYVGID 226
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
+ +DY+D + +R+ + L K E + ER
Sbjct: 227 ISKDYVDFSQRRLERAEEEMEKVL-----KEKEEHIVNMTFEER 265
>gi|317179291|dbj|BAJ57079.1| DNA methylase [Helicobacter pylori F30]
Length = 369
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDTN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363
>gi|323344448|ref|ZP_08084673.1| DNA methylase [Prevotella oralis ATCC 33269]
gi|323094575|gb|EFZ37151.1| DNA methylase [Prevotella oralis ATCC 33269]
Length = 278
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 70/280 (25%), Positives = 110/280 (39%), Gaps = 33/280 (11%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSL------VDA 67
+ E+ +KII N + VL+KLP S+DL+ PPYNL+ + +
Sbjct: 2 LEEYLNKIINANCMEVLKKLPNNSIDLVVTSPPYNLKNSTGNGMKDGRGGKWSNAALIKG 61
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-NIFRIGTMLQNLNFWIL 126
DS+D + Y + LL RV+K +G ++ + + + L
Sbjct: 62 Y-DSYDDCMPNDEYAKWQHEVLLELVRVIKDDGAIFYNHKWRVQNGLMQDRHDIVYDVPL 120
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
I+ K NF F +E + + + + S+
Sbjct: 121 RQIIIWKRKGGINFNAGYFLPTYEVIYFIAKKDFK----------------LAPHSNNYG 164
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ + RN HP P L+ RI+ S+T IILDPF GSGT+ VA L R
Sbjct: 165 DVWEIMQEQRND-----HPAPFPVELIDRIISSTTSQ--IILDPFMGSGTTAVVAAGLGR 217
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
FIGIE Y ++A +R+ + + T+P
Sbjct: 218 DFIGIEKSPKYCEVAMQRLERNKINSEVAKFHQPTFFTKP 257
>gi|269123833|ref|YP_003306410.1| DNA methylase N-4/N-6 domain-containing protein [Streptobacillus
moniliformis DSM 12112]
gi|268315159|gb|ACZ01533.1| DNA methylase N-4/N-6 domain protein [Streptobacillus moniliformis
DSM 12112]
Length = 391
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 64/304 (21%), Positives = 117/304 (38%), Gaps = 33/304 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I + + + + +++DLI+ DPP+ Q +L + + D W+ E
Sbjct: 4 NDIYNLDCLDGMRNMYDETIDLIYLDPPFFTQRKHKLKSKEGIEYE-FNDIWN---DIEE 59
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y + R L+ +RVLK +G ++V + I +L+ + + +
Sbjct: 60 YKEYLRIRLVEMKRVLKNDGNIFVHCDNNASHIIRLLLEEIFGVSNFVSEIIWTYKRWSN 119
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+ ++H+ + S S + K D N D ++ + R+++G
Sbjct: 120 SKKGLLDSHQNIYHFSKSKEYKFNIIYTDYSPTTNVDQILQDRIRDGNGKSIYK-RDENG 178
Query: 201 EKLH----------------------------PTQKPEALLSRILVSSTKPGDIILDPFF 232
+ ++ PTQKP LL IL ++ GDI+LDPF
Sbjct: 179 KVVYNRIKKGVPLGDVWEIPFLNPKAKERVGYPTQKPIQLLENILKIASNEGDIVLDPFL 238
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
GSGT +K L R +IG ++ + I IA R+ + L K
Sbjct: 239 GSGTCAVASKLLNRRYIGFDINPNAISIAKYRLEYPIKTESALLKNGIDKYDVKTDREKR 298
Query: 293 LVER 296
++ R
Sbjct: 299 ILSR 302
>gi|297379533|gb|ADI34420.1| Modification methylase [Helicobacter pylori v225d]
Length = 369
Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats.
Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSTTQDAN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363
>gi|262199051|ref|YP_003270260.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
14365]
gi|262082398|gb|ACY18367.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
14365]
Length = 319
Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats.
Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 37/278 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-DKFSSFE 79
D++I +++ V+++L +DL++ DPP+ G+L R + DA ++ D + E
Sbjct: 25 DRLIHADNLKVMDELGDGCIDLVYIDPPFAT---GKLRRGREAADDAPALAFRDVPDNPE 81
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ A+ L+ACRR+L +G+L+V Y + + L + +
Sbjct: 82 DFVAWLEPRLVACRRLLAGHGSLFVHLDYRTVHYVKVCLDRIFGRSRFVNEIIWCYSVGG 141
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI------------- 186
RRF H+T++W + + Y F DA++ +
Sbjct: 142 KSRRRFARKHDTILWYTR---SGDYAFFPDAVRVPRKGGSHMRVVRDESGALVQEKTDRR 198
Query: 187 ----------------PICSGSERL-RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ E L R PTQKPE LL RI+ ++ P ++ D
Sbjct: 199 TGKVYRYPVAAGKIPEDWWADIELLNRGDRERTGWPTQKPERLLERIIGATAGPDAVVAD 258
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
F G+GT+ AVA++L R F+ ++ + A +R+
Sbjct: 259 WFCGAGTTAAVAQRLGRRFLTTDIASSAVACAEQRLEQ 296
>gi|168703324|ref|ZP_02735601.1| adenine-specific methyltransferase [Gemmata obscuriglobus UQM 2246]
Length = 290
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 48/278 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + +G+ + VL LPA DL+FADPP+N+ +Y +
Sbjct: 7 NDVAEGDCVQVLNTLPAGCADLVFADPPFNIGYQYDVYDDKRAK--------------AD 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y +T WL A RVL P+G+L++ + L L + N +VW + +
Sbjct: 53 YLTWTEKWLAAAVRVLAPHGSLFLAIGDEFVAEHKVRLDALGLTMRNWVVWHYTFGVNC- 111
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNY----------------DALKAANEDVQM---- 180
++F +H +++ PK + + + + +D +
Sbjct: 112 -SKKFNRSHAHILYYVRDPKNHQFFPDEVRVPSARMTTYADKRANPVGKLPDDTWVLRPQ 170
Query: 181 ---------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
W +P G+ RN+ G H Q PEA+L R++ ++KPGD++LDPF
Sbjct: 171 ESDAHFAPDSDTWHVPRICGTFHERNEAG---HKCQMPEAVLDRVIRVASKPGDLVLDPF 227
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GSGT+ AVAKKL R + G+E+ + Y D KR+ ++
Sbjct: 228 AGSGTTLAVAKKLGRRYFGVELSEQYADGVRKRLQMIE 265
>gi|312796824|ref|YP_004029746.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
454]
gi|312168599|emb|CBW75602.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
rhizoxinica HKI 454]
Length = 313
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 27/246 (10%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ ++ + L +S+DLI ADPPY L + D + + + A+
Sbjct: 57 NCDFLTDVGSLADQSIDLILADPPYGLGKDYG---NDSDKRNG-----------QDFIAW 102
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
T WL LKP+G+L+V ++ I L+ ++N+I+W + P RR
Sbjct: 103 TCRWLELAIPKLKPSGSLYVFCTWQYAPEIFCFLKRR-LTMINEIIWDRRVPSMGGTTRR 161
Query: 145 FQNAHETLIWASPSPKAK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
F + H+ + + + S T + + + +
Sbjct: 162 FTSVHDNIGFFAVSKDYYFDLDPVRIPYDPVTKKARSRRIFEGSKWLELGYNPKDVWSVS 221
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
RL + E++ HPTQKP ++ R+++SS PG ++LDPF GSGT+ + +R F+G E
Sbjct: 222 RLHRQHAERVAHPTQKPLEIIERMVLSSCPPGGLVLDPFMGSGTTAVACARHQRRFVGYE 281
Query: 253 MKQDYI 258
+ +Y
Sbjct: 282 INPEYC 287
>gi|188527117|ref|YP_001909804.1| DNA methylase [Helicobacter pylori Shi470]
gi|308182486|ref|YP_003926613.1| DNA methylase [Helicobacter pylori PeCan4]
gi|188143357|gb|ACD47774.1| DNA methylase [Helicobacter pylori Shi470]
gi|308063174|gb|ADO05061.1| DNA methylase [Helicobacter pylori Sat464]
gi|308064671|gb|ADO06563.1| DNA methylase [Helicobacter pylori PeCan4]
Length = 369
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363
>gi|119961011|ref|YP_948482.1| adenine specific DNA methylase [Arthrobacter aurescens TC1]
gi|119947870|gb|ABM06781.1| adenine specific DNA methylase [Arthrobacter aurescens TC1]
Length = 304
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 62/294 (21%), Positives = 110/294 (37%), Gaps = 33/294 (11%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------NGQLYRPDHSLV 65
+ ++ ++ L LP + LI+ DPP+N +G
Sbjct: 12 NLVVHADNAEFLPTLPDGAFTLIYVDPPFNTGRVQRRQETRMVRNADGDGDRVGFKGRSY 71
Query: 66 DAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
D + + + F Y +F L+ R+L +GTL++ Y + ML ++
Sbjct: 72 DTIKGALHSYDDAFSDYWSFLEPKLVEAWRLLADDGTLYLHLDYREVHYAKVMLDSIFGR 131
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---------- 174
+ R+ H+ ++ +P + +
Sbjct: 132 ECFLNEIIWAYDYGARAKNRWPTKHDNILVYVKNPTKYHFDNAEVDREPYMAPGLVTPAK 191
Query: 175 -NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
W I S + R + +PTQKPE L+ RI+ +S++ GD LD F G
Sbjct: 192 RELGKLPTDVWWHTIVSPTGR-----EKTGYPTQKPEGLVRRIVSASSREGDWCLDFFAG 246
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI-ELTVLTGKRTEP 286
SGT GAVA KL R+F+ ++ + I++ KR+ + L + + P
Sbjct: 247 SGTLGAVAAKLGRNFVCVDQNEQAIEVMRKRLGTKADFRRSGSLPDASLDQAAP 300
>gi|269976470|ref|ZP_06183455.1| DNA methylase N-4/N-6 domain-containing protein [Mobiluncus
mulieris 28-1]
gi|269935271|gb|EEZ91820.1| DNA methylase N-4/N-6 domain-containing protein [Mobiluncus
mulieris 28-1]
Length = 441
Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 30/310 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDK 74
+++ G +++ L L A VD ++ DPPYN Q + D + D+
Sbjct: 47 NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ Y F L A R +L G+++V +H + + +
Sbjct: 107 WDD-AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEIVWI 165
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
RRF H+T+++ + + + + + A+ + + P
Sbjct: 166 YGSGGGSRRRFGRKHDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEGMVAPD 225
Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R N +PTQKP A++ R L + PG ++LD F GSG++ A L
Sbjct: 226 VWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAAGLGLR 285
Query: 248 FIGIEMKQDYIDIATKRIASVQPL------GNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
FIG+E + +A KR+ S+ G+ L L KR P +P
Sbjct: 286 FIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP----------KP 335
Query: 302 GQILTNAQGN 311
G++ +
Sbjct: 336 GELNRDKSNR 345
>gi|315586305|gb|ADU40686.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
Length = 369
Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats.
Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DIILDPF G+
Sbjct: 271 NIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363
>gi|319901658|ref|YP_004161386.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
36-108]
gi|319416689|gb|ADV43800.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
36-108]
Length = 584
Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats.
Identities = 66/280 (23%), Positives = 110/280 (39%), Gaps = 30/280 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
II + + +L++LP+ SVD FADPPYN+ + D D D Y
Sbjct: 233 IINDDCLKILKELPSNSVDFCFADPPYNV----------NKKYDNCNDDIDII----EYF 278
Query: 83 AFTRAWLLACRRVLKPNGT-------LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ W++ R++KP T W I + + ++ + + L+ V
Sbjct: 279 QWCDKWIMELARIIKPGKTVAILNIPQWAIRHFQCLNKLLKFQDWIIWEGLSVPVRMIMP 338
Query: 136 PMPNFRGR---------RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+ + H L S + + Y +K ++ + +
Sbjct: 339 AHYSVICFTKGEANDLPFYHLKHSPLEINSINTYKEFYCIRNSCIKKRAKENIIDKVQVT 398
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ RL++ HPTQ P + R++ T GD++LDPF GSGT+ A+ L R
Sbjct: 399 NLWWDIHRLKHNSQRVDHPTQLPPMFMERLISIFTNEGDLVLDPFNGSGTTSLCAEMLGR 458
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
+ GIE+ Y DIA KR +Q N + +
Sbjct: 459 KYFGIELSSKYYDIAIKRHVDLQAGINPFGKHSETPKAKN 498
>gi|298241762|ref|ZP_06965569.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
44963]
gi|297554816|gb|EFH88680.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
44963]
Length = 344
Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats.
Identities = 62/296 (20%), Positives = 114/296 (38%), Gaps = 53/296 (17%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
N+ W +++I G++ +L L V+LI+ DPP+ A +D
Sbjct: 40 NNEPGWSNRLIWGDNQDILPALLPLFRDQVNLIYIDPPFMTGRTFG-----RKEQLAYSD 94
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML--------QNLN 122
+W+ +AY + L ++L P G++++ + + ML Q
Sbjct: 95 TWNN--DIDAYLQWLYPILQTLHQLLAPTGSMYLHLDWRTSHYVKVMLDEIFGFNVQGNG 152
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL----------- 171
N+I+W + R + H+T+++ + S +
Sbjct: 153 PGFKNEIIWHYQSG--GQTRRYYTRKHDTILFYTKSGDYCFHKERIGERRGAQKRNHMRQ 210
Query: 172 ------------------KAANED-VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
NED + SD I +R + TQKP AL
Sbjct: 211 VVGPDGQISWTIKSAGKLYTYNEDTLIPPSDVWSDISHLHQR---DPERTGYATQKPAAL 267
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
L RIL++S++ D+++D F GSG + VA+ L+R +I + + I ++R+
Sbjct: 268 LERILLASSEEDDLVMDCFCGSGVTPIVAEHLKRRWIACDKSELAITTTSQRLQQY 323
>gi|227528860|ref|ZP_03958909.1| adenine-specific methyltransferase [Lactobacillus vaginalis ATCC
49540]
gi|227351222|gb|EEJ41513.1| adenine-specific methyltransferase [Lactobacillus vaginalis ATCC
49540]
Length = 322
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 70/279 (25%), Positives = 113/279 (40%), Gaps = 33/279 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
E S+ + +K+I G+S V+++LP+ S+DL DPPYNL + D +T
Sbjct: 30 EKSFSLEQVTNKVINGDSFQVMDQLPSHSIDLALVDPPYNL----------NKKYDGMTF 79
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
K Y +T W+ + +LK + +++V + + +L+
Sbjct: 80 KQMK---PAEYQQYTEDWINKLKPLLKASASVYVFADWETSIVLAPVLEQYFTIKNRITW 136
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASP-----------------SPKAKGYTFNYDALKA 173
R+ + L K G+ ++ A KA
Sbjct: 137 QREKGRGALTNWKNSSEDIWFLTVDPHDYVFNVDQVKQRRPVVAPYKEDGHAKDWQATKA 196
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
N M S+ I + HPTQKPE L+++++++S+ PGD+I DPF G
Sbjct: 197 GNFRDTMPSNLWDDISIP---YWSMPENTDHPTQKPEKLMAKVILASSNPGDLIFDPFAG 253
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+G+S AKKL R FIGIE Y R+
Sbjct: 254 AGSSLVTAKKLGRHFIGIEQSLLYCAWGQYRLNKANNDP 292
>gi|307151149|ref|YP_003886533.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306981377|gb|ADN13258.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
Length = 588
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 70/309 (22%), Positives = 114/309 (36%), Gaps = 51/309 (16%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
E+ +KI+ G+ + L+KLP S+D F DPPYNL+ +D +
Sbjct: 232 EEYTNKILTGDCLDYLKKLPDNSIDFAFVDPPYNLKK----------QYSGYSDDLE--- 278
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y + W+ RVLKP T ++ + + + L
Sbjct: 279 -IEQYFQWCDQWIREIARVLKPGRTCAILN-----IPLRAIRHFIFSKTLLQFQNWIVWD 332
Query: 137 MPNFRGRRFQNAHETLIWASPSPKA-----------KGYTFNYDALKAAN---EDVQMRS 182
F R AH T++ S T + A N +D +RS
Sbjct: 333 ALAFPVRLIMPAHYTILCFSKGKPRELPGLMGESGITTTTSAPETFNALNPLADDFCLRS 392
Query: 183 DWLIPI--------------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ S RL++ HP Q P L+ R++ T+ G+++L
Sbjct: 393 SCIKKRKNLNINDRTLLTDLWSDIHRLKHNSRRVDHPCQLPPHLMYRLISLFTEMGEVVL 452
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR----IASVQPLGNIELTVLTGKRT 284
D F G+GT+ A ++ R +IGIE+ +Y IA R + + P + +
Sbjct: 453 DCFNGAGTTTLAAHQIGRKYIGIEISPEYSKIAIDRHDEIVKGLDPFRKEDRILRAKNSP 512
Query: 285 EPRVAFNLL 293
PR+
Sbjct: 513 VPRLIKQKY 521
>gi|317013518|gb|ADU80954.1| M.HpyAIII, type II adenine methyltransferase [Helicobacter pylori
Gambia94/24]
Length = 274
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRVLQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNDKQMRDVWNFPAIAPWEKANGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MNR 253
>gi|308061664|gb|ADO03552.1| DNA methylase [Helicobacter pylori Cuz20]
Length = 369
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 62/273 (22%), Positives = 101/273 (36%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ Y A C RVLK G + V I T
Sbjct: 165 L--------------WHEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363
>gi|296123807|ref|YP_003631585.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
3776]
gi|296016147|gb|ADG69386.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
3776]
Length = 306
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/312 (24%), Positives = 127/312 (40%), Gaps = 64/312 (20%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++++ + I+ L + PA SVDL FADPP+N+ +Y D S +
Sbjct: 1 MNQLLLEDCITGLAQQPAGSVDLAFADPPFNIGYTYDVYA-------------DSKES-Q 46
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y A+ W+ A R L+P+GT W+ + Q + F + +VW + +
Sbjct: 47 QYLAWCEEWIAAVYRALRPDGTFWLAIGDEYAAELKVAAQKIGFHTRSWVVWYYTFGVNC 106
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYD--------------ALKAANEDVQMRSDWL 185
+F +H + + + +TFN + A K AN ++ D
Sbjct: 107 --KFKFTRSHAHIFYFVK--DREKFTFNSEDPANRIPSARQLVYADKRANPKGRLPDDTW 162
Query: 186 IPICSGSERLRN--------------------------------KDGEKLHPTQKPEALL 213
I + E R K+ E H Q PE LL
Sbjct: 163 IIPPTVEEMARQTSATWVLRPQDLADRFTPTEDTWYFPRVAGTFKEREGFHGCQMPEQLL 222
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
RI+ + PG+++LDPF GS T+ AVAKKL R+++G ++ + Y+ KR+ S++P
Sbjct: 223 GRIIRMCSNPGELVLDPFSGSATTLAVAKKLGRNYLGFDISEQYVTHGLKRLESIEPGDP 282
Query: 274 IELTVLTGKRTE 285
++
Sbjct: 283 LDGAAEPTMSAP 294
>gi|227874929|ref|ZP_03993081.1| DNA methylase N-4/N-6 domain protein [Mobiluncus mulieris ATCC
35243]
gi|227844506|gb|EEJ54663.1| DNA methylase N-4/N-6 domain protein [Mobiluncus mulieris ATCC
35243]
Length = 446
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 30/310 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDK 74
+++ G +++ L L A VD ++ DPPYN Q + D + D+
Sbjct: 47 NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ Y F L A R +L G+++V +H + + +
Sbjct: 107 WDD-AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEIVWI 165
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
RRF H+T+++ + + + + + A+ + + P
Sbjct: 166 YGSGGGSRRRFGRKHDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEGMVAPD 225
Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R N +PTQKP A++ R L + PG ++LD F GSG++ A L
Sbjct: 226 VWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAAGLGLR 285
Query: 248 FIGIEMKQDYIDIATKRIASVQP------LGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
FIG+E + +A KR+ S+ G+ L L KR P +P
Sbjct: 286 FIGVECAALGVHLARKRLVSLGASFGVWRSGDTHLMNLGDKRQPPHHP----------KP 335
Query: 302 GQILTNAQGN 311
G++ +
Sbjct: 336 GELNRDKSNR 345
>gi|20663549|pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboiia (Moraxella
Bovis)
gi|20663550|pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboiia (Moraxella
Bovis)
Length = 260
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 69/264 (26%), Positives = 102/264 (38%), Gaps = 37/264 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI + N L+++ KSV L DPPYNL WD F S
Sbjct: 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKA----------------DWDSFDSHNE 48
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ AFT W+ L +G+L++ + N I L + N I W K + M +
Sbjct: 49 FLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSA 108
Query: 141 RGRRFQNAHETLIWASPSPKAKGYT---------------------FNYDALKAANEDVQ 179
+ R L ++ Y N
Sbjct: 109 KRRFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNPNGRL 168
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
W E++ K + H T KP L+ RI+ +S+ P D++LD F GSGT+
Sbjct: 169 CGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAI 228
Query: 240 VAKKLRRSFIGIEMKQDYIDIATK 263
VAKKL R+FIG +M +Y++ A
Sbjct: 229 VAKKLGRNFIGCDMNAEYVNQANF 252
>gi|317008725|gb|ADU79305.1| adenine specific DNA methyltransferase (putative type II)
[Helicobacter pylori India7]
Length = 232
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 113/250 (45%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIKRYAPLINPNGCIIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ G ER++
Sbjct: 116 RNLNRRYVQDTEFALWAVKKKAKWVF------NKPENEKYLRPLILKSPVVGGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L R+FIGIE++++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIELEKEYF 222
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 223 QTAKKRLNLF 232
>gi|307636783|gb|ADN79233.1| type II DNA modification enzyme /methyl transferase [Helicobacter
pylori 908]
gi|325996968|gb|ADZ49176.1| Type II adenine methyltransferase [Helicobacter pylori 2017]
Length = 281
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L ++ WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIMSVNKGDWDKENGINDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MNR 253
>gi|303242614|ref|ZP_07329089.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
CD2]
gi|302589822|gb|EFL59595.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
CD2]
Length = 266
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 80/258 (31%), Positives = 126/258 (48%), Gaps = 31/258 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I G+ +SVL L K++DLIFADPPYNL + + D + + Y
Sbjct: 20 VINGDCMSVLPYLKEKTIDLIFADPPYNLGKDFG-------------NDSDNWKNKSEYL 66
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ AW+ C RVLK NGT++++ S NI I L+ I + + +
Sbjct: 67 HWCYAWIDECFRVLKDNGTIYIMNSTQNISYIDVYLREKYNVI--NNIVWYYDSSGVQSK 124
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKA----------ANEDVQMRSDWLIPICSGS 192
++ + +E +I A+ S KA YTFN++ +K + + G+
Sbjct: 125 YKYGSLYEPVIMANKSAKA-RYTFNWENIKVEARTGAVRKLIDYRKTPPQPYNNEKVPGN 183
Query: 193 ----ERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R+R + + HP+QKPE LL RI+ +S+ P +I+LDPF G+ T+ VA +L R
Sbjct: 184 VWEFSRVRYRMSEYENHPSQKPEILLERIVKASSNPDEIVLDPFSGTFTTAVVANRLGRK 243
Query: 248 FIGIEMKQDYIDIATKRI 265
IGIE+ Y I +R+
Sbjct: 244 SIGIELNDCYYGIGLRRV 261
>gi|119489624|ref|ZP_01622384.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
gi|119454536|gb|EAW35684.1| DNA-methyltransferase [Lyngbya sp. PCC 8106]
Length = 295
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 48/314 (15%)
Query: 18 EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + + G+++ +L + + SVDLIF DPPYN+ ++ +DK+
Sbjct: 7 DDQHTLFYGDALQILSSEISSNSVDLIFIDPPYNIGKRF-------------SNFYDKWE 53
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E Y + L C RVLKP+GTL+V+ S + L+ + + +
Sbjct: 54 SEEKYANWAYKLLDECLRVLKPSGTLYVMTSTQAMPYFDLYLRQKTVILSR--IVWHYDS 111
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------------------LKAANE 176
+ F + +E ++ + Y FN D N
Sbjct: 112 SGVQAKKYFGSMYEPILHCVKNKN--NYIFNSDDIKVEAKTGAQRKLIDYRKAVPCQYNT 169
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + W P R R ++ EK HP+QKPEALL RI+++S+ ++LDPF G+ T
Sbjct: 170 EKVPGNVWYFPRV----RYRMEEYEK-HPSQKPEALLERIILASSNQDSLVLDPFAGTFT 224
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
S AVAK+L R I IE +++Y+ I +R+ ++ +L + T E+
Sbjct: 225 SAAVAKRLGRISISIESQEEYLKIGLRRVLGLKEYKGEKLLTPSKNHTRK---NKNSPEK 281
Query: 297 GLIQPGQILTNAQG 310
IQ + +A
Sbjct: 282 NFIQKS--IFDADS 293
>gi|317010373|gb|ADU84120.1| typeII adenine methyltransferase [Helicobacter pylori SouthAfrica7]
Length = 284
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + + VL + DLIFADPPY L +G L +V WDK
Sbjct: 22 TLYQEDCNEVLPLF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEEGVNGI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNHQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNDKQMRDVWNFPAIAPWEKANGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKRKFIGIEKESEFVKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MNR 256
>gi|325995371|gb|ADZ50776.1| Type II DNA modification enzyme/methyl transferase [Helicobacter
pylori 2018]
Length = 281
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L ++ WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIMSVNKGDWDKENGINDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFT 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E+ K
Sbjct: 137 CRYLTHSAEQIIWARKSRK-HKHVFNYEILKKINNDKQMRDVWSFPAIAPWEKANGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESGFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MNR 253
>gi|307701753|ref|ZP_07638767.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
gi|307613011|gb|EFN92266.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
Length = 441
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 30/310 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDK 74
+++ G +++ L L A VD ++ DPPYN Q + D + D+
Sbjct: 47 NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ Y F L A R +L G+++V +H + + +
Sbjct: 107 WDD-AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEIVWI 165
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
RRF H+T+++ + + + + + A+ + + P
Sbjct: 166 YGSGGGSRRRFGRKHDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEGMVAPD 225
Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R N +PTQKP A++ R L + PG ++LD F GSG++ A L
Sbjct: 226 VWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAAGLGLR 285
Query: 248 FIGIEMKQDYIDIATKRIASVQPL------GNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
FIG+E + +A KR+ S+ G+ L L KR P +P
Sbjct: 286 FIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP----------KP 335
Query: 302 GQILTNAQGN 311
G++ +
Sbjct: 336 GELNRDESNR 345
>gi|317181656|dbj|BAJ59440.1| DNA methylase [Helicobacter pylori F57]
Length = 369
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I D+I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLDQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DI+LDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIVLDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363
>gi|127465|sp|P23192|MTM2_MORBO RecName: Full=Modification methylase MboII; Short=M.MboII; AltName:
Full=Adenine-specific methyltransferase MboII; AltName:
Full=DNA MTase MboIIA
gi|44181|emb|CAA40297.1| methyltransferase MboII [Moraxella bovis]
Length = 260
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 67/265 (25%), Positives = 99/265 (37%), Gaps = 39/265 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI + N L+++ KSV L DPPYNL WD F S
Sbjct: 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKA----------------DWDSFDSHNE 48
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ FT W+ L +G+L++ + N I L + N +
Sbjct: 49 FLPFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQN-WITWDKRDGMGS 107
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTF----------------------NYDALKAANEDV 178
R F ET+++ S S N
Sbjct: 108 AKRGFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNPNGR 167
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
W E++ K + H T KP L+ RI+ +S+ P D++LD F GSGT+
Sbjct: 168 LCGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSGTTA 227
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATK 263
VAKKL R+FIG +M +Y++ A
Sbjct: 228 IVAKKLGRNFIGCDMNAEYVNQANF 252
>gi|261838927|gb|ACX98692.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
52]
Length = 232
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 77/250 (30%), Positives = 116/250 (46%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + ++ + WDK +F
Sbjct: 3 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKNAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
IA KR+
Sbjct: 223 QIAKKRLNLF 232
>gi|306818253|ref|ZP_07451983.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
35239]
gi|304648992|gb|EFM46287.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
35239]
Length = 451
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 30/310 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDK 74
+++ G +++ L L A VD ++ DPPYN Q + D + D+
Sbjct: 47 NRLYVGENLAALGALAGEFAGGVDCVYIDPPYNSQADYVAKMALHGDGGQILEQKQYGDR 106
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ Y F L A R +L G+++V +H + + +
Sbjct: 107 WDD-AQYLQFMFERLGALRELLADTGSIFVHCDWHAAASLRLVCDEVFGSRNLLNEIVWI 165
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
RRF H+T+++ + + + + + A+ + + P
Sbjct: 166 YGSGGGSRRRFGRKHDTILFYAKNARRNFFDPDAVRVPYRAAIAPKRRGLFHPEGMVAPD 225
Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R N +PTQKP A++ R L + PG ++LD F GSG++ A L
Sbjct: 226 VWDIPRPPNHATSWVGYPTQKPLAVMERALRGACPPGGLVLDCFAGSGSTLVAAAGLGLR 285
Query: 248 FIGIEMKQDYIDIATKRIASVQPL------GNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
FIG+E + +A KR+ S+ G+ L L KR P +P
Sbjct: 286 FIGVECAALGVHLARKRLVSLGASFGVWRVGDTHLMNLGDKRQPPHHP----------KP 335
Query: 302 GQILTNAQGN 311
G++ +
Sbjct: 336 GELNRDESNR 345
>gi|218440461|ref|YP_002378790.1| methyltransferase [Cyanothece sp. PCC 7424]
gi|218173189|gb|ACK71922.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
sp. PCC 7424]
Length = 283
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 43/285 (15%)
Query: 18 EWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
I G++++VL E++ ++S++LIF DPPYN+ D +DK+
Sbjct: 7 NKDHLIFHGDALTVLLEEIDSESIELIFLDPPYNIGKRFG-------------DFYDKWL 53
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E Y + WL C RVLKPNGTL+V+ S ++ L+ + I S+
Sbjct: 54 SDEDYVEWAYKWLDECIRVLKPNGTLYVMTSTQSMPYFDIYLRKKLTILSRIIWHYDSSG 113
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--------------------LKAANE 176
+ + F + +E ++ K Y FN +A N
Sbjct: 114 V--QASKYFGSMYEPILHCVKDKK--NYIFNSEAIKIEAKTGAKRKLIDYRKTIPTPYNT 169
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + W R R ++ E HP+QKPE+LL RI+++S+ D+ILDPF G+ T
Sbjct: 170 NKIPGNVWYFSRV----RYRMEEYEN-HPSQKPESLLERIILASSNEKDLILDPFAGTFT 224
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
+ AVAK+LRR+ I IE +++Y+ I +RI Q +L L
Sbjct: 225 AAAVAKRLRRNSISIESQEEYLKIGLRRILDWQEYKGEKLLPLQK 269
>gi|161528827|ref|YP_001582653.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosopumilus
maritimus SCM1]
gi|160340128|gb|ABX13215.1| DNA methylase N-4/N-6 domain protein [Nitrosopumilus maritimus
SCM1]
Length = 258
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 56/248 (22%), Positives = 104/248 (41%), Gaps = 4/248 (1%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI N I + +P +DL+ DPP+ + + + + ++ E
Sbjct: 7 NKIYNQNCIDGMSSIPKNKIDLVITDPPFAINFKAKKANYNRTSSRVLSGY--NEIKPED 64
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y FT +W+ R+LK +G+++V ++N+ I L ++ F +N I+W+ +
Sbjct: 65 YYDFTFSWMTEVYRILKDSGSMYVFSGWNNLKDILRALDDVGFVTINHIIWKYQFGVVTK 124
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+ + H + + + + + + D
Sbjct: 125 KKFVTSHYHCLYVCKDDKKRKFFPFSRFKKEDKTKDGRSLHYKDKEDVWDIKREYWTGDE 184
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ PT+ P L+ +IL S++ DI+LDPF GSG V+K L R ++G E+ DY
Sbjct: 185 KT--PTKLPSELIQKILEYSSEKKDIVLDPFIGSGQVAVVSKSLGRRYLGFEIVPDYYKF 242
Query: 261 ATKRIASV 268
A KR+
Sbjct: 243 AKKRLDKD 250
>gi|307151753|ref|YP_003887137.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306981981|gb|ADN13862.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
Length = 312
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/286 (22%), Positives = 112/286 (39%), Gaps = 52/286 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II G ++ +L++LP + + PPY Q + V + + +
Sbjct: 35 NFIIHGEALDMLKRLPDGLIQTVVTSPPYYGQRDYD-----------VENQIGIEKNTDE 83
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWR 132
Y +RVL+ +GTLW+ I +R+ L+ + + +DI+W
Sbjct: 84 YINRLVEIFEEVKRVLREDGTLWINVGDKYIDGNLAGLPWRLALALRERGWILRSDIIWY 143
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-TFNYDALKAANEDVQM----------- 180
K N MP+ R HE + + + + + +E +M
Sbjct: 144 KPNAMPSSVRNRPTTDHEYIFLFAKNSQYYYDADAIREPHITFSEKSKMRGGRNHLGKNG 203
Query: 181 ----------RSDWLIPICSGSERLRNKDGEKL-----------HPTQKPEALLSRILVS 219
S+ + + ++ + H PE L+ +++
Sbjct: 204 GTPEQGKNSGNSNLHRGRWDQAFHPKGRNKRTVWEVPLSKFRDAHFAVFPEKLIEPCILA 263
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
I+LDPFFGSGT G VA K R FIGIE+ ++Y +IA+KRI
Sbjct: 264 GCPENGIVLDPFFGSGTVGLVAHKKGRKFIGIELNENYCEIASKRI 309
>gi|33337335|gb|AAQ13335.1| HpyIIIM protein [Helicobacter pylori]
Length = 273
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 98/243 (40%), Positives = 133/243 (54%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK
Sbjct: 19 TLYQGDCNEVLPQF-ENRFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEEGVNGI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRLLQKLDFKILNLITWQKTNPPPNFS 136
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N D QMR W P + E++ K
Sbjct: 137 CRYLTHSAEQIIWARKSYK-HKHVFNYEVLKKINNDKQMRDVWSFPAIAPWEKVNGK--- 192
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF S T+G A L+R FIGIE + +I I+
Sbjct: 193 --HPTQKPLALLVRLLLMASDENSLIGDPFSWSSTTGIAANLLKREFIGIEKESGFIKIS 250
Query: 262 TKR 264
R
Sbjct: 251 MDR 253
>gi|220906264|ref|YP_002481575.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7425]
gi|219862875|gb|ACL43214.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7425]
Length = 323
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 32/266 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I + + L+ LP +SVDL+F DPPYNL +R K E Y
Sbjct: 50 IHQDLFTTLDFLPHRSVDLLFIDPPYNLDKTFNTHRF-------------KKKDLETYTD 96
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
+ + L R+LKP ++++ + + + ++++ + + + + R
Sbjct: 97 WLASCLNGLERMLKPTASIYICSDWQSSPAVFEVIKHRFQ--IRNRITWEREKGRG-ASR 153
Query: 144 RFQNAHETLIWAS--------------PSPKAKGYTFN--YDALKAANEDVQMRSDWLIP 187
++NA E + + + YT N + ++ +
Sbjct: 154 NWKNASEDIWFCTVSDRYTFNVEAVKLKRKVMAPYTVNGMPKDWEITDQGNYRLTYPSNL 213
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + HPTQKPE LL++I+++S+ PGD+I DPF GSGT+ AKKL R
Sbjct: 214 WTDLTVPFWSMPENTDHPTQKPEKLLAKIILASSNPGDVIFDPFLGSGTTSVAAKKLGRQ 273
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGN 273
+ G+EM + Y + KR+ + +
Sbjct: 274 YFGVEMDELYCCLTEKRLKIAEADPS 299
>gi|186684880|ref|YP_001868076.1| DNA methylase N-4/N-6 domain-containing protein [Nostoc punctiforme
PCC 73102]
gi|186467332|gb|ACC83133.1| DNA methylase N-4/N-6 domain protein [Nostoc punctiforme PCC 73102]
Length = 369
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 50/299 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D+I+ +S+ +L LP + VDL+ + PPYNL + + E
Sbjct: 10 LDQILLEDSLQLLRNLPDQCVDLVVSSPPYNLGKEYESR-----------------QALE 52
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNFWILNDIVW 131
Y A LL C R+LK G+L+ + R +L++ N I+W
Sbjct: 53 IYLKEQTAVLLECSRILKNTGSLFWQVGAFSDRGMLIPLDIRFFPILESCRLIPRNRIIW 112
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASP----------------SPKAKGYTFNYDALKAAN 175
+ + + ++F HET++W + K Y N + N
Sbjct: 113 ARQHGL--HAQKKFSCRHETILWFTKSDNYKFNLDPIRVPQKYQNKKHYRGNRKGELSCN 170
Query: 176 -EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
E WL N + + +HP Q PE L++RI++++T DI+LDPF GS
Sbjct: 171 PEGKNPGDIWLFRNVK-----HNHEEQTIHPCQFPEDLVTRIILATTNKNDIVLDPFMGS 225
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
GT VA+ R FIG E++ Y +A +R+ P N L R +
Sbjct: 226 GTVAVVARDSERHFIGSEIEPKYYQVALRRLNG-NPDKNGYFPNLKTLRDYVERTGQSI 283
>gi|15611155|ref|NP_222806.1| type II DNA modification (methyltransferase [Helicobacter pylori
J99]
gi|4154584|gb|AAD05658.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 277
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 135/243 (55%), Gaps = 8/243 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + + DLIFADPPY L +G L +V WDK +
Sbjct: 22 TLYQGDCNEVLPQF-ENAFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINDI 79
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ ++ LK G+L + G+YHN+F +G +LQ L+F ILN I W+K+NP PNF
Sbjct: 80 DEFNYQWINNAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFS 139
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
R ++ E +IWA S K + FNY+ LK N + QMR W P + E+ K
Sbjct: 140 CRYLTHSAEQIIWARKSYK-HKHVFNYEILKKINNNKQMRDVWNFPAIAPWEKANGK--- 195
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +I I+
Sbjct: 196 --HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEKESRFIKIS 253
Query: 262 TKR 264
R
Sbjct: 254 MNR 256
>gi|282881331|ref|ZP_06290011.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
5C-B1]
gi|281304807|gb|EFA96887.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
5C-B1]
Length = 299
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/306 (22%), Positives = 118/306 (38%), Gaps = 71/306 (23%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSF 78
+ I G+ I ++ +P S+DL+ ADPPY V WD ++ +
Sbjct: 3 LNCCILGDCIEKMKSIPDGSIDLVIADPPYW---------------KVVGQEWDYQWRTE 47
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ Y ++ W+ R+L+ GT + G + + + L N+ + I+ K
Sbjct: 48 KDYIEWSLRWIREVARILRIGGTFYCFGYFRTLTLLVPYLDNIGLELRQQIILDKGIRAV 107
Query: 139 NFRG----RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--------------EDVQM 180
+ R + F N E++++ K F +A N M
Sbjct: 108 SGRATKKYKMFPNVTESILFIIKDNKRFIKPFLKSRQQALNLKAKEINEALGVKSNGGGM 167
Query: 181 RSDWLIPICS---GSERLRNK----------------------------------DGEKL 203
S + +E L NK ++
Sbjct: 168 WSIYTGKNVCEQFPTEELWNKLSKILQFDLPYNKLAQTFNPQMGYTDVWTDIDFYKEKRY 227
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQKP L+ R++ +S+ GDI+LDPFFG G++ L+R++I IE+ + Y + A K
Sbjct: 228 HPTQKPIKLIERLIAASSNEGDIVLDPFFGCGSTQLSCIDLKRNYIAIELDKRYYETALK 287
Query: 264 RIASVQ 269
RI +
Sbjct: 288 RIELLN 293
>gi|328948974|ref|YP_004366311.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
gi|328449298|gb|AEB15014.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
Length = 314
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 33/280 (11%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K+ L N ++ + ++ + G+ + +LE P DLI DPPYNL N
Sbjct: 24 KSRLLTESNISAETDIVNRTLNGDILKMLEFTPDGFADLIIIDPPYNLSKN--------- 74
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ + + S E YD + W A + LK NG+L++ G + + ++
Sbjct: 75 -FNGMKFA---SRSQEGYDEYLATWFPAVCKKLKSNGSLYICGDWKCTSSLQRAVERELT 130
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF----------------- 166
+ R+ ++N E + +A +P +
Sbjct: 131 VLNRITWQREKGRG---AKSNWKNGMEDIWFAVKNPADYYFDVEAVKMKRKVLAPYKADG 187
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+E + S + HPTQKPE L ++++++S++PGDI
Sbjct: 188 KPKDWDEESEGNFRLTYPSNFWDDISVPFWSMPENTDHPTQKPEKLYAKLILASSRPGDI 247
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ DPF GSGT+ VAKKL R F GIE ++Y A KR+A
Sbjct: 248 VFDPFLGSGTASVVAKKLGRRFCGIEQNEEYCLWAEKRLA 287
>gi|317177128|dbj|BAJ54917.1| DNA methylase [Helicobacter pylori F16]
Length = 369
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/278 (22%), Positives = 102/278 (36%), Gaps = 32/278 (11%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDTN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V NI + + +
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIV-----NIQPMFSDCIPTH 205
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-----------TFNYDAL 171
+I + + + W S A Y N
Sbjct: 206 HFISKFFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKK 265
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILD 229
+ + + + D G + K H PE L+ R L + DIILD
Sbjct: 266 EGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILD 325
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
PF G+GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 326 PFNGAGTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363
>gi|308751880|gb|ADO45363.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
TK-6]
Length = 275
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/276 (23%), Positives = 106/276 (38%), Gaps = 45/276 (16%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
E+ ++I S +E+LP SV L+ PPYN+ DK S
Sbjct: 21 EYLNRIYCK-SSESMEELPDNSVHLVVTSPPYNVGKEY-----------------DKDLS 62
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM---------LQNLNFWILND 128
F+ Y F + RVL P G V + N+ R + + ++ F + +
Sbjct: 63 FKEYLEFLKRVWKEVYRVLVPGGR--VCINVANLGRKPYIPLHAFIIQDMLDIGFLMRGE 120
Query: 129 IVWRKSNPMPNFRGRRFQNA---------HETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
I+W K + HE ++ S +G + +E ++
Sbjct: 121 IIWNKDKSASPSTAWGSWLSAQNPTLRDIHEYILVFSKDTFKRGNPLKRQSTITRDEFLE 180
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ ++++ HP P L R + T G+++LDPF GSG +
Sbjct: 181 FTKSVWVFPAVSAKKI-------GHPAPFPIELPYRCIQLYTFKGEVVLDPFMGSGQTAI 233
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
A K R F+G E+ QDY+ +A +RI V GN
Sbjct: 234 AAIKSGRYFVGYEINQDYVKLAERRIRQVLSEGNSS 269
>gi|193216190|ref|YP_001997389.1| putative methyltransferase [Chloroherpeton thalassium ATCC 35110]
gi|193089667|gb|ACF14942.1| Site-specific DNA-methyltransferase (adenine-specific)
[Chloroherpeton thalassium ATCC 35110]
Length = 292
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 33/302 (10%)
Query: 16 IFEWKDK---IIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ ++++K I G++I +L ++ +S+DL+F DPPYN+ +D
Sbjct: 1 MAKFENKNHVIYHGDAIDILQREIADESIDLVFVDPPYNIGKKF-------------SDF 47
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
DK+ S Y + W+ C R+LKP GTL+++ + +++ + +
Sbjct: 48 HDKWPSDTDYAEWAYRWIDECIRILKPTGTLYLMSGTQAMPYFDLYVRDKLTVLGRLVWA 107
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL------ 185
S+ + + F + +E ++ KA + + ++A + D+
Sbjct: 108 YDSSGV--QAKKYFGSMYEPILHCVKDAKAYCFNADDILVEAKTGAKRKLIDYRGEVPKP 165
Query: 186 ------IPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
R+R + D + HP+QKP LL RI+ +S+ GDI+LDPF G+ T+
Sbjct: 166 YNTQKVPGNVWEFPRVRYRMDEYEDHPSQKPMVLLERIVRASSNAGDIVLDPFAGTFTAA 225
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK-RTEPRVAFNLLVERG 297
AVAK R + IE ++ Y+ I +RI + +L + + + R G
Sbjct: 226 AVAKAFGRKSVSIESQEKYLKIGLRRILDMTEYQGEKLDAVKKNTKIKNRRGVKYEETTG 285
Query: 298 LI 299
+
Sbjct: 286 EL 287
>gi|307701460|ref|ZP_07638479.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
gi|307613370|gb|EFN92620.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
Length = 348
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/303 (21%), Positives = 109/303 (35%), Gaps = 56/303 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-------------------------- 53
++ +I G+++ VL L ++ LI+ DPP+N
Sbjct: 33 ENTVIHGDNLPVLRGLADETFQLIYIDPPFNTGKVQSRVTMRTRQVREPGAAGGAESADS 92
Query: 54 ------NGQLYRPD--------------HSLVDAVTDSWDKFSSFE----AYDAFTRAWL 89
G + D + + +S++ Y F L
Sbjct: 93 DGSPASRGASRKSDAAPSTAGSNSGSRVGFKGQSYETIRGQVTSYDDEFADYWGFLAPRL 152
Query: 90 LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
RVLKP+GTL++ Y + +L L + RR+ H
Sbjct: 153 EEAWRVLKPSGTLYLHLDYREVHYAKVLLDALFGRECFLNEIIWAYDYGARTKRRWPAKH 212
Query: 150 ETLIWASPSPKAKGY------TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+ ++ PK + Y A + R + + +
Sbjct: 213 DNILVYVKDPKQYYFDSESVDREPYMAPGLVTAEKAARGKLPTDVWWHTIVSPTGKEKTG 272
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ TQKPE +L RI+ +S++PGD +LD F GSGT+GAVA K+ R F+ ++ I +
Sbjct: 273 YATQKPEGILRRIVAASSRPGDWVLDFFAGSGTTGAVAGKMGRHFVLVDENPQAIAVMRA 332
Query: 264 RIA 266
R A
Sbjct: 333 RFA 335
>gi|311221492|gb|ADP76553.1| DNA methyltransferase [Helicobacter pylori]
Length = 587
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 74/250 (29%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 358 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFPTLKSAKRQGIDFGEWDK--NF 415
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 416 K-----LLEWIARYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 470
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE + SG E+ +
Sbjct: 471 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSTVVSGLEKTK-- 522
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L R+FIGIE +++Y
Sbjct: 523 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYF 577
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 578 QTAKKRLNLF 587
>gi|50954042|ref|YP_061330.1| DNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50950524|gb|AAT88225.1| DNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 285
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 20/266 (7%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-------------NGQLYRPDHSLVDA 67
D ++ +++SV+ LP + LI+ DPP+N G + +
Sbjct: 10 DTVVCADNVSVVTALPDGAFRLIYLDPPFNTGRPQARQQTTSVRSEGGSVIGFKGRSYER 69
Query: 68 VTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
+ F F+ Y F L+ R+L +GTL++ Y +L L
Sbjct: 70 IKGDLLSFDDRFDDYWQFLEPRLIEAWRLLADDGTLYLHLDYREAHYAKVLLDALFGREC 129
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQM 180
+ R+ H+T++ +P+ + Y A +
Sbjct: 130 FLNEIVWAYDYGAKAKNRWPAKHDTILVYVKNPRGYFFDSAAVDREPYMAPGLVTPEKAE 189
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + + +PTQKPE +L RI+ +S++ GD +LD F GSGT+GAV
Sbjct: 190 LGKLPTDVWWHTIVSPTGREKTGYPTQKPEGILRRIVQASSREGDWVLDFFAGSGTTGAV 249
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIA 266
A L R F+ ++ D + + +R A
Sbjct: 250 AAGLGRRFLLVDSSPDALAVMRERFA 275
>gi|167044904|gb|ABZ09571.1| putative DNA methylase [uncultured marine crenarchaeote
HF4000_APKG8D22]
Length = 255
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 57/259 (22%), Positives = 112/259 (43%), Gaps = 4/259 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + I ++ +P + +DL+ DPP+ + + + + ++ E
Sbjct: 1 MNKIYNKDCIVGMKAIPNEKIDLVITDPPFAINFKAKKANYNRTASRVLSGY--HEIKVE 58
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y FT AW+ R+LK +G+++V ++N+ I T L + F +N I+W+ +
Sbjct: 59 DYYDFTNAWMYEIYRILKKSGSMYVFSGWNNLKDILTALDDNGFTTINHIIWKYQFGVVT 118
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ + H + + + ++ + + + D
Sbjct: 119 SKKFVTSHYHCLFVCKDNKKRKFFPYSRFKKNAKTSDGRSLHYKDKEDVWIINREYWTGD 178
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ PT+ P ++ +IL S++ D++LDPF GSG ++K L R ++G E+ + Y D
Sbjct: 179 DKT--PTKLPAEIIKKILQYSSQKTDLVLDPFLGSGQVAVISKMLGRRYLGFEIVKPYYD 236
Query: 260 IATKRIASVQPLGNIELTV 278
ATKRI E+
Sbjct: 237 FATKRIQKNVYRLKKEIET 255
>gi|208434020|ref|YP_002265686.1| adenine specific DNA methyltransferase (putative type II)
[Helicobacter pylori G27]
gi|208431949|gb|ACI26820.1| adenine specific DNA methyltransferase (putative type II)
[Helicobacter pylori G27]
Length = 232
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 223 QTAKKRLNLF 232
>gi|172039381|ref|YP_001805882.1| putative DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
gi|171700835|gb|ACB53816.1| putative DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
Length = 295
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 69/308 (22%), Positives = 116/308 (37%), Gaps = 71/308 (23%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KF 75
++ ++II+ + +L++LP KSVDLI DPPY + WD ++
Sbjct: 1 MKYLNQIIQRDCTEILQELPDKSVDLIILDPPYW---------------KVIQQKWDYQW 45
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ E Y + WL RV+K +G+L++ G N+F + + +L F I+ K
Sbjct: 46 RTEEDYKEWCLQWLSEISRVIKLSGSLYLFGYLRNLFYLYEPIIDLGFNFRQQIIIDKGM 105
Query: 136 PMPNFRGR---------------RFQNAHETLIWASPSP--------------------- 159
+ R N+ +
Sbjct: 106 KAISGRATKNYKMFPNVTESLLFFIYNSRPFIKQFLKQRQKELGLTALEINKRLGVKSNG 165
Query: 160 --KAKGYTFNYD-----------------ALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
YT N ED+ + + + + +
Sbjct: 166 GGMWSLYTGNNILAQVPTKEMWEKLQDILEFNYPYEDISATFNIEMGVTDVWNDINFYEE 225
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
++ HPTQKP L+ RI+ +S++ I+LDPF GSG++ L R +IGIE ++ YID
Sbjct: 226 KRFHPTQKPVKLMERIIRASSQENMIVLDPFMGSGSTAIACLNLNRHYIGIEKEKKYIDK 285
Query: 261 ATKRIASV 268
RI +
Sbjct: 286 INSRIENF 293
>gi|325963996|ref|YP_004241902.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470083|gb|ADX73768.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 290
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 22/270 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN---------------GQLYRPDHSLVD 66
++ ++ L LP + LI+ DPP+N G D
Sbjct: 13 LVVHADNADFLPSLPDGAFTLIYVDPPFNTGRTQTRQQTTMVVNADGTGDRVGFKGRSYD 72
Query: 67 AVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
+ + ++ F Y +F L+ R+L +GTL++ Y + ML +
Sbjct: 73 TIKGALHRYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLDAIFGRE 132
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQ 179
+ R+ H+ ++ +P + Y A + +
Sbjct: 133 CFLNEIIWAYDYGARAKNRWPTKHDNILVYVKNPAKYHFDSAEVDREPYMAPGLVTPEKR 192
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ + + +PTQKPE L+ R++ +S++PGD LD F GSGT GA
Sbjct: 193 ELGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGLVRRVVAASSRPGDWCLDFFAGSGTLGA 252
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
VA ++ R F+ ++ Q ID+ KR+ +
Sbjct: 253 VAARMDRKFVCVDQNQPAIDVMAKRLGAHA 282
>gi|217033395|ref|ZP_03438825.1| hypothetical protein HP9810_1g9 [Helicobacter pylori 98-10]
gi|216944100|gb|EEC23528.1| hypothetical protein HP9810_1g9 [Helicobacter pylori 98-10]
Length = 369
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 63/273 (23%), Positives = 102/273 (37%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I D+I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLDQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYSATQDAN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKNGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DIILDPF G+
Sbjct: 271 NIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVAKARLKE 363
>gi|254185002|ref|ZP_04891591.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1655]
gi|184215594|gb|EDU12575.1| DNA modification methylase RsrI [Burkholderia pseudomallei 1655]
Length = 282
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/259 (26%), Positives = 115/259 (44%), Gaps = 27/259 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI A PPY L + + DK S + +
Sbjct: 31 LHNRDFLHEAASLPDASIDLIVAGPPYGLGKDYG-------------NDSDK-RSGDEHL 76
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK G+++V ++ I + L+ ++N+I+W + P
Sbjct: 77 AWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFLKT-KLTMVNEIIWDRRVPSMGGTT 135
Query: 143 RRFQNAHETLIWASPSPKAKGY-----------TFNYDALKAANEDVQMRSDWLIPICSG 191
RRF + H+ + + + S T + K + +
Sbjct: 136 RRFTSVHDNIGFFAVSKGYYFDLDPVRIPYDADTKKARSRKLFEGSKWLELGYNPKDVWS 195
Query: 192 SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G
Sbjct: 196 VSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVG 255
Query: 251 IEMKQDYIDIATKRIASVQ 269
E+ + Y IA +R+AS+
Sbjct: 256 YEINESYCAIARERVASLA 274
>gi|332297012|ref|YP_004438934.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
12168]
gi|332180115|gb|AEE15803.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
12168]
Length = 337
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 34/262 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ VL +LPA+ DL+ DPPYNL R + Y
Sbjct: 68 LFCGDLFDVLPRLPAEFADLLILDPPYNLDKTFDGMRFSAT-------------DHRQYS 114
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+ +W LKPNG+L++ G + + + +L+ ILN I+W++ R
Sbjct: 115 AYLESWFTPLLETLKPNGSLYLCGDWKSTGSLFLLLEKH-AHILNRIIWQREKGRGALR- 172
Query: 143 RRFQNAHETLIWASPSPKAKGYTFN------------------YDALKAANEDVQMRSDW 184
++N E + +A SP+A+ Y ++ +
Sbjct: 173 -NWKNNCEDIWFAVKSPQAEYYFDAEAVKQKRRVIAPYRENGAPKDWTESDGGKYRLTSA 231
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ + HPTQKPE LL++++++S PG ++ DPF GSGT+ AKKL
Sbjct: 232 GNFWDDITVPYWSMKENTPHPTQKPEKLLAKLILASCPPGGMVFDPFAGSGTTLTAAKKL 291
Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
R F GIE ++Y A KR+A
Sbjct: 292 GRRFCGIERSEEYCLFARKRLA 313
>gi|209524051|ref|ZP_03272602.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|209495426|gb|EDZ95730.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 495
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 72/318 (22%), Positives = 123/318 (38%), Gaps = 79/318 (24%)
Query: 21 DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRP-----DHSLVDAVTDSWDK 74
+ + G+++ VL + + SVDL + DPP+N + N D + A D+W+
Sbjct: 3 NYLYYGDNLEVLRRYIKDDSVDLCYIDPPFNSKRNYNQIYNNIGSEDKAQAQAFIDTWEW 62
Query: 75 FS-----------------------------------SFEAYDAFTRAWLLACRRVLKPN 99
+ S AY + RVLKP
Sbjct: 63 DNRAMHGFEEISTNYNGLFTEQAVYLITGLENVLGKGSLLAYLVSMTLRITEIHRVLKPT 122
Query: 100 GTLWVIGSYHNIFRIGTML----QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
G+ ++ + +L + LN+I+W + + F H+ +
Sbjct: 123 GSFYLHCDPTASHYLKLVLDAVFCSQGGNFLNEIIWCYR--GAGYPKKDFGRRHDLIFRY 180
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK------------- 202
S K +TFN D+++ E+ + G++R + G++
Sbjct: 181 SK---GKEFTFNLDSVR---EEYAETTKKRFSHYIGNKRGKKDFGQQSLNPLGKQPDDWW 234
Query: 203 -------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+PTQKPEALL RI+ +S+ GDI+LD + G GT+ AV +K R +I
Sbjct: 235 EIQPIAPSARERLGYPTQKPEALLERIIKASSNEGDIVLDAYCGCGTTVAVCEKFNRKWI 294
Query: 250 GIEMKQDYIDIATKRIAS 267
GI++ I + KR+
Sbjct: 295 GIDITYQSISLILKRLED 312
>gi|254421699|ref|ZP_05035417.1| DNA methylase domain protein [Synechococcus sp. PCC 7335]
gi|196189188|gb|EDX84152.1| DNA methylase domain protein [Synechococcus sp. PCC 7335]
Length = 330
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 65/278 (23%), Positives = 115/278 (41%), Gaps = 33/278 (11%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
L S+ + D+ I +S++ L +P VDL+ DPPYN Q + + S
Sbjct: 35 KLLRISGPQSVADILDRTIHQDSLTALPLMPDSFVDLLIVDPPYNRQKDF-----NGSTF 89
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
+ + Y + +W+ R+LKP ++++ + + + Q +
Sbjct: 90 KVMPE--------ADYQIWLASWMSQLPRLLKPTASIYMCCDWQSSN---AIYQVFSRHF 138
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK--------------AKGYTFN---Y 168
R ++NA E + + + S K Y N
Sbjct: 139 QVRNRITWEREKGRGAKRNWKNASEDIWFGTMSDKYTFNVEAVKLQRRVRAPYRDNAGKP 198
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ + + S + HPTQKPE L+++++++S+ PG+++
Sbjct: 199 KDWQETQQGNFRNTYPSNLWTDISIPFWSMAENTDHPTQKPEKLIAKMVLASSNPGNVVF 258
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
DPF GSGT+ VAKKL R ++GIE ++ Y A KR+A
Sbjct: 259 DPFLGSGTTSVVAKKLGRHYVGIEQEELYACWAQKRLA 296
>gi|332673157|gb|AEE69974.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
Length = 369
Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 62/273 (22%), Positives = 101/273 (36%), Gaps = 22/273 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ ++ N I D+I +S+ L+ LP +D++ PPYN +N + +
Sbjct: 105 ESYKKEFSKETNEIQSCLDQIYCEDSLEFLKNLPNNCIDIVLTSPPYNFGINYSATQDAN 164
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y A C RVLK G + V I T
Sbjct: 165 L--------------WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISK 210
Query: 123 FWILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--- 177
F+I ++W+ N+ + A + + + E
Sbjct: 211 FFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKD 270
Query: 178 -VQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + D G + K H PE L+ R L + DIILDPF G+
Sbjct: 271 SIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGA 330
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ VAK+L R FIGI++ + Y ++A R+
Sbjct: 331 GTTTKVAKQLGRRFIGIDISEKYCEVARARLKE 363
>gi|289579072|ref|YP_003477699.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
Ab9]
gi|289528785|gb|ADD03137.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
Ab9]
Length = 629
Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 114/301 (37%), Gaps = 45/301 (14%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAK-----------SVDLIFADPPYNLQLNGQLY----- 58
+ +W +++I G+++ V++ L A +DLI+ DPP++ + + +
Sbjct: 60 NPQDWYNRLIYGDNLLVMQALLAGDEESGLPSLRGKIDLIYIDPPFDSKADYRTKITLPG 119
Query: 59 -----RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+P A +D+W + + +Y L+ + +L G + V +H
Sbjct: 120 GDIEQKPSVIEQFAYSDTWKEGT--VSYLKMLYPRLVLMKELLSDRGVICVHVDWHVGHY 177
Query: 114 IGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ +L + + + + AH+ ++ S + D +
Sbjct: 178 VKILLDEIFGKDKFVNEIVWYYYNKYSNAKKCLPRAHDNILVYSKNNDHIYNEIRIDRGE 237
Query: 173 AANEDVQMRSD---WLIPICSGSERLRNKDGEKL------------------HPTQKPEA 211
+ V++ + +G+ R + +K + TQK
Sbjct: 238 TVKQLVRVNVNGVLQNARDENGNLLYREVNDKKADDVFIIPQLQPASSEWMNYKTQKHHD 297
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
LL RI+ + I+ D F GSGT+GAVA++L R +I ++ + I KR+
Sbjct: 298 LLERIIKIFSNEDSIVADFFAGSGTTGAVAERLGRRWIMCDIGKPACMIMRKRLIDQNAK 357
Query: 272 G 272
Sbjct: 358 P 358
>gi|330399501|ref|YP_004030599.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
454]
gi|312170238|emb|CBW77277.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
rhizoxinica HKI 454]
Length = 237
Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
N+ + + + G+ + + KL ++SVD + DPPY + D
Sbjct: 18 SNAKEQTVNYLYHGDCLVAMPKLASESVDCVVTDPPY---------------LVNYRDRG 62
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ + ++ D + RVLK + S++ R + F I +V+
Sbjct: 63 GRTIANDSNDEWLAPAFAEMFRVLKRDAVCISFYSWNKADRFFLAWKAAGFRIAGHLVFT 122
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
KS KA + +++ + I
Sbjct: 123 KSYSS----------------------KAGLVRYQHESAYVLAKGRPPVLAQPIADVVPF 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
G + HPT+KP + L ++ + T PGD +LDPF GSG++ A++L R +IGIE
Sbjct: 161 ----PYSGNRHHPTEKPVSSLRTLIQAFTNPGDTVLDPFAGSGSTCVAARELGRRYIGIE 216
Query: 253 MKQDYIDIATKRI 265
+ Y A R+
Sbjct: 217 LDARYFTAAKARL 229
>gi|218962098|ref|YP_001741873.1| BstYI methyltransferase [Candidatus Cloacamonas acidaminovorans]
gi|167730755|emb|CAO81667.1| BstYI methyltransferase [Candidatus Cloacamonas acidaminovorans]
Length = 310
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 55/264 (20%), Positives = 106/264 (40%), Gaps = 39/264 (14%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +G+ + +L+ +P ++ L+ PPYN+ + +P + Y
Sbjct: 16 LFQGDCLELLDSIPDAAIQLVVTSPPYNIGKKYEKRQP-----------------LDEYI 58
Query: 83 AFTRAWLLACRRVLKPNGT-LWVIGSYHN---IFRIGTMLQNL----NFWILNDIVWRKS 134
+ + + C RVLK +G+ W +G+Y I + +L + + N I+W
Sbjct: 59 DWQKKVITECCRVLKKSGSICWQVGNYIENGEIIPLDILLYPVFAESGLKLRNRIIWHFG 118
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL--------- 185
+ + +RF +E ++W + S + + + D
Sbjct: 119 HGL--HSSKRFSGRYEVILWFTKSDEYIFNLDPVRIPQKYPNKKYFKGDKKGELSCNPLG 176
Query: 186 ---IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + N + +HP Q P L+ R+++S T D LDPF G+GT+ +
Sbjct: 177 KNPSDVWNIPNVKANHIEKTIHPAQFPVELVERLILSMTNENDWTLDPFMGTGTTQIASL 236
Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
R G E+ +Y +IA +RI
Sbjct: 237 IHNRKSCGAELLDEYYEIALQRIN 260
>gi|219850691|ref|YP_002465123.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
E1-9c]
gi|219544950|gb|ACL15400.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
E1-9c]
Length = 396
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 67/258 (25%), Positives = 105/258 (40%), Gaps = 26/258 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I+ G+S VL +LP VDL+ PPYN L+ D ++A
Sbjct: 153 DSIVCGDSEEVLSRLPDNCVDLVLTSPPYNFGLSYH--------------EGDDGRHWDA 198
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y + + L C RVLK G V I T +L ++W+
Sbjct: 199 YFSKLFSILDQCVRVLKFGGRCLVNIQPLFSDNIPTHHLISQHLLLRRMIWKGEILWEKN 258
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--------ANEDVQMRSDWLIPICSGS 192
A W SPS YT+ + + + E + + +D
Sbjct: 259 NYNCKYTAWG--SWKSPSAPYLKYTWEFIEVFSKGDLKKTGPKEGIDITADEFKAWVVAR 316
Query: 193 ERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+ + K HP PE L+ R L + GD++LDPF G GT+ VA++L+R FIG
Sbjct: 317 WSIGPERQMKRYNHPAMFPEELVERALKLFSYQGDLVLDPFNGVGTTTLVARRLQRRFIG 376
Query: 251 IEMKQDYIDIATKRIASV 268
+++ +Y A +R+++
Sbjct: 377 VDLSPEYCATARERLSNR 394
>gi|331658494|ref|ZP_08359438.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
gi|331054159|gb|EGI26186.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
Length = 263
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 31/251 (12%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--KFSSFE---- 79
GN++ +L + +S+D + DPPY+ + R + + + +F F
Sbjct: 31 GNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGGNLHRFDGFAGENM 90
Query: 80 ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ +T+ W+ R ++P G V + + + Q F IVW K
Sbjct: 91 DARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIVWNKGRG 150
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
F++ E ++W S K + +D
Sbjct: 151 SRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMTF---------------------P 189
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+K HPT KPE L++ ++ ++ G +LDPF GSGT+G A K R FIGIE
Sbjct: 190 VIPSKKRHPTGKPEELMAELVRTA-NSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSDH 248
Query: 257 YIDIATKRIAS 267
Y D+AT+R+ +
Sbjct: 249 YFDVATQRLKT 259
>gi|108562471|ref|YP_626787.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
gi|107836244|gb|ABF84113.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
Length = 230
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/248 (30%), Positives = 114/248 (45%), Gaps = 23/248 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG E+ +
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGIEKTK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222
Query: 259 DIATKRIA 266
A KR++
Sbjct: 223 QTAQKRLS 230
>gi|218459652|ref|ZP_03499743.1| site-specific DNA-methyltransferase (adenine-specific) protein
[Rhizobium etli Kim 5]
Length = 101
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 57/97 (58%), Positives = 73/97 (75%)
Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVG 335
+TV+TGK+ E RVAFN+LVE GLI+PGQ+LT+A+ SA V ADGT+ SG E GSIHR+G
Sbjct: 1 MTVMTGKKAEVRVAFNVLVESGLIKPGQVLTDAKRRYSAIVRADGTVASGGEAGSIHRLG 60
Query: 336 AKVSGSETCNGWNFWYFEKLGELHSINTLRILVRKEL 372
AKV G + CNGW FW+FE L I+ LR ++R +L
Sbjct: 61 AKVQGLDACNGWTFWHFEDGQSLRPIDDLRSVIRSDL 97
>gi|291165802|gb|EFE27850.1| DNA (cytosine-5-)-methyltransferase [Filifactor alocis ATCC 35896]
Length = 310
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 32/279 (11%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
N E + DK I G++ + LP VDL+ DPPYNL N +
Sbjct: 21 NRCITLEQSAPLSSVLDKTILGDTFDTIPYLPKNFVDLLIVDPPYNLDKNF-----NGKQ 75
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+ D+ Y+ +T+ W+ +LK +++V + + IG +L+ F
Sbjct: 76 FKQLNDT--------DYEEYTKQWIQKVIPLLKDTASVYVCCDWKSSLIIGNILKQYFF- 126
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN----------------Y 168
L + + + +N E + +A+ S + +
Sbjct: 127 -LQNRITWQREKGRGAMSNW-KNGMEDIWFATKSKNFTFHVEDVKIRRKVLAPYRKNGKP 184
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ + S + HPTQKPE LL++++++S+ GD++
Sbjct: 185 KDWEETENGKFRNTYPSNFWDDISIPYWSMSENTAHPTQKPEKLLAKLILASSNRGDVVF 244
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
DPF GSG++ AKKL R F+GIE Y KR+
Sbjct: 245 DPFLGSGSTSVTAKKLNRHFVGIEQNPQYCIWTEKRLEM 283
>gi|220913251|ref|YP_002488560.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
A6]
gi|219860129|gb|ACL40471.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
A6]
Length = 290
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/270 (21%), Positives = 104/270 (38%), Gaps = 22/270 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------------NGQLYRPDHSLVD 66
++ ++ L LP + LI+ DPP+N +G D
Sbjct: 13 LVVHADNAQYLPTLPDGAFTLIYVDPPFNTGRAQSRQETRMVANAGGSGDRVGFKGRSYD 72
Query: 67 AVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
+ + ++ F Y +F L+ R+L +GTL++ Y + ML +
Sbjct: 73 TIKGALHRYDDAFSDYWSFLEPRLVEAWRLLADDGTLYLHLDYREVHYAKVMLDAIFGRE 132
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANEDVQ 179
+ R+ H+ ++ +P + Y A +
Sbjct: 133 CFLNEIIWAYDYGARARNRWPTKHDNILVYVKNPSKYHFDNAEVDREPYMAPGLVTPAKR 192
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ + + +PTQKPE L+ R++ +S++PGD LD F GSGT GA
Sbjct: 193 ELGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGLVRRVVSASSRPGDWCLDFFAGSGTLGA 252
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
VA KL R F+ ++ Q +DI +R+ +
Sbjct: 253 VAAKLGRKFVCVDQNQPAVDIMARRLGAHA 282
>gi|323345089|ref|ZP_08085313.1| modification methylase BglII (N(4)) [Prevotella oralis ATCC 33269]
gi|323094359|gb|EFZ36936.1| modification methylase BglII (N(4)) [Prevotella oralis ATCC 33269]
Length = 260
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 9/255 (3%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
DKI +S + ++P KSV L+ PPYN+ ++ + +V + + S
Sbjct: 1 MDKIFN-HSSEFMSEIPDKSVSLMVTSPPYNIDISYGNKWKNRRIVSSKGKKYADKQSEA 59
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----IFRIGTMLQNLNFWILNDIVWRKSN 135
Y + +RVLK +G +W I +++ L +IV +
Sbjct: 60 DYRKMLDKVIKETKRVLKDDGQIWFNIKNRYENCVIQPPFWIMEYFKDMYLKNIVIWNFD 119
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN---EDVQMRSDWLIPICSGS 192
+ R +E + + + + + + + A N + + + + S
Sbjct: 120 WGGATQKRFCSR-YEYVFFFTKNKDKYTFNLDDVKIPALNYRPDRYKSQLKNPTDVWKIS 178
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
N HP+Q PE L+ RI+ T GD++LDPF GSGT+ VAK+L R ++G E
Sbjct: 179 LVSGNSPERTEHPSQYPEELVERIIKVGTHEGDLVLDPFMGSGTTAVVAKRLNRRYVGYE 238
Query: 253 MKQDYIDIATKRIAS 267
++ +YI+IA KR+ +
Sbjct: 239 IEPEYIEIANKRLEN 253
>gi|332672852|gb|AEE69669.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Helicobacter pylori 83]
Length = 232
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/250 (30%), Positives = 112/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHANAFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNISRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK L+ +I+ T P DI+LDPF GSGT+G K+L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLTLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
IA KR+
Sbjct: 223 QIAKKRLNLF 232
>gi|207091956|ref|ZP_03239743.1| DNA methylase [Helicobacter pylori HPKX_438_AG0C1]
Length = 257
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/259 (22%), Positives = 99/259 (38%), Gaps = 22/259 (8%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ ++I +S+ L+KLP +D++ PPYN +N + +
Sbjct: 5 NYLNQIYCKDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTNL-------------- 50
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS--N 135
++ Y A C RVLK G + V I T F+I ++W+
Sbjct: 51 WQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGLIWKGEILW 110
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED----VQMRSDWLIPICSG 191
N+ + A + + + E + + D G
Sbjct: 111 EKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEGDKDSIDITDDEFKKWVYG 170
Query: 192 SERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+ K H PE L+ R L + DI+LDPF G+GT+ VAK+L R FI
Sbjct: 171 KWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIVLDPFNGAGTTTKVAKQLGRRFI 230
Query: 250 GIEMKQDYIDIATKRIASV 268
GI++ + Y ++A +R+
Sbjct: 231 GIDISEKYCEVAKERLKET 249
>gi|288800806|ref|ZP_06406263.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 299
str. F0039]
gi|288332267|gb|EFC70748.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 299
str. F0039]
Length = 317
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/284 (21%), Positives = 112/284 (39%), Gaps = 33/284 (11%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ + L++ +++S+ + DK + V++ P DLI DPPYNL +
Sbjct: 20 IELRKELSMLSDKSSVDDVIDKTFNQDLFDVIDFFPKHFADLIIIDPPYNLSKDFA---- 75
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
A D +Y ++ ++WL +LKPNG+++V + + I +L
Sbjct: 76 -GFKFKATDD--------NSYISYIKSWLPKVLELLKPNGSVYVCCDWKSTSAIYQVL-- 124
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS-----------------PSPKAKG 163
+ + + ++NA E + +
Sbjct: 125 -SEYTIVKNRITWQREKGRGAKTNWKNAMEDIWFGVLNEKNYFFDVDSVMQKRKVFAPYK 183
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
+ E + S + HPTQKPE L+++++++S
Sbjct: 184 VDGTPKDWEETEEGNFRMTYPSNFWDDISVPYWSMSENTDHPTQKPEKLIAKLILASCPK 243
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
G ++ DPF GSGT+ VAKKL R + GIE ++Y + KR+
Sbjct: 244 GGVVFDPFLGSGTTSVVAKKLGRHYCGIEFNEEYALLTQKRLNM 287
>gi|298737012|ref|YP_003729542.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
gi|298356206|emb|CBI67078.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
Length = 232
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIHHADAFEIIKDFHQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIKHYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG E+ +
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLEKTK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L R FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERKFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 223 QTAQKRLNLF 232
>gi|308061349|gb|ADO03237.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
Cuz20]
Length = 232
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/248 (31%), Positives = 112/248 (45%), Gaps = 23/248 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK F
Sbjct: 3 QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSATRQGIDFGEWDKNFKF 62
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 63 -------LEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ G ER++
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVGGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222
Query: 259 DIATKRIA 266
IA KR+
Sbjct: 223 QIAKKRLD 230
>gi|51893663|ref|YP_076354.1| type II restriction-modification system DNA methylase
[Symbiobacterium thermophilum IAM 14863]
gi|51857352|dbj|BAD41510.1| type II restriction-modification system DNA methylase
[Symbiobacterium thermophilum IAM 14863]
Length = 304
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 40/265 (15%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ ++I ++ + + +P VDL+ PPYN+ N + D S
Sbjct: 45 FANRIYNADARN-MSFIPDGVVDLVVTSPPYNVGKNYATH--------------DDCLSM 89
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNIF-----RIGTMLQNLNFWILNDIVW 131
E Y C RVL P G + V G + I + L F + +I+W
Sbjct: 90 EEYLDLLEQVWRECYRVLAPGGRIAINVAGVDRKPYLPLHAYITLQMIRLGFQMRGEIIW 149
Query: 132 RK--SNPMPNFRGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
K S + G + HE ++ S G+ D +S
Sbjct: 150 NKGASVGVSTAWGSWCSPSNPTLRDLHEYILVFSKEDWRMGHRGETDLTPE-EFVTYTKS 208
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
W P S + HP P L SR++ T GD++LDPF GSGT+ A
Sbjct: 209 IWEFPTVSAK--------KVGHPAPFPLELPSRLIKLYTYKGDLVLDPFNGSGTTCQAAA 260
Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
L R +IG+++ Y +A K + +
Sbjct: 261 LLGRRWIGVDIDPGYCALAEKNMRT 285
>gi|283778011|ref|YP_003368766.1| DNA methylase N-4/N-6 domain-containing protein [Pirellula staleyi
DSM 6068]
gi|283436464|gb|ADB14906.1| DNA methylase N-4/N-6 domain protein [Pirellula staleyi DSM 6068]
Length = 314
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/303 (21%), Positives = 112/303 (36%), Gaps = 51/303 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++ G+ L+ LP VD + PPY Q + + + + S
Sbjct: 22 NLVLHGDCEEHLKALPDSFVDCVVTSPPYFQQRDYE----------GESAQVGQEESPAE 71
Query: 81 YDAFTRAWLLACRRVLKPNGTLW-VIGS-YHN------IFRIGTMLQNLNFWILNDIVWR 132
Y +R L GTLW VIG Y N +R+ L + + + +D +W
Sbjct: 72 YVDRLTRIFSQVQRTLTARGTLWLVIGDKYQNGSQLGMPWRVALALIDSGWRLRSDCIWH 131
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-TFNYDALKAANEDVQMRSDWLIPICSG 191
K N MP+ R HE + + + S + +E+ QMR G
Sbjct: 132 KPNAMPSPVKNRPTTDHEYVFFFTKSADYFYDADAIREPHVTFSENSQMRGGRNHFGKRG 191
Query: 192 SERLRNKDG--------------------------------EKLHPTQKPEALLSRILVS 219
K+G H PE+L+ + +
Sbjct: 192 GTPEAGKNGGSSNLHDGRWDQAFHPLGRNKRTVWSIPLSKNRDAHFAVFPESLVRTCISA 251
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
+ G ++LDPF GSGT+ VA++L R ++GI+ ++Y+++ +R+A+
Sbjct: 252 GSPAGGLVLDPFAGSGTTLLVARELGRRYLGIDCAKEYVELIERRLAAEPTSKKSTKKRA 311
Query: 280 TGK 282
K
Sbjct: 312 AAK 314
>gi|225870198|ref|YP_002746145.1| DNA methylase [Streptococcus equi subsp. equi 4047]
gi|225699602|emb|CAW93244.1| putative DNA methylase [Streptococcus equi subsp. equi 4047]
Length = 236
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 26/244 (10%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
GN + +L +L S+D++ DPPYN+ + + +D WDK +
Sbjct: 12 CGNCLELLTELTDGSIDMVITDPPYNISVKNNFATMGRTGIDF--GDWDKGADL------ 63
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP-NFRGR 143
+W+ R L NG + + + N+ I + + + W K NPMP N R
Sbjct: 64 -LSWIDIASRKLTKNGGMVIFNDWKNLGDIARHCEKTGLAVKDIFRWVKDNPMPRNRDRR 122
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
++ + N + + R ++ PI SG+E +
Sbjct: 123 YITDSEYGIWVVRK---------NSKWVFNRKSEKYDRPEYRYPIVSGAE-------KTQ 166
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQKP AL+ I+ T ++LDPF GSG++G R FIG E+ +DY +IA K
Sbjct: 167 HPTQKPVALMRDIITRHTTKRAVVLDPFMGSGSTGVACLLTERDFIGYELNKDYFNIANK 226
Query: 264 RIAS 267
RIA
Sbjct: 227 RIAE 230
>gi|71911257|ref|YP_282807.1| adenine-specific methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|94989076|ref|YP_597177.1| adenine-specific methyltransferase [Streptococcus pyogenes
MGAS9429]
gi|94992967|ref|YP_601066.1| adenine-specific methyltransferase [Streptococcus pyogenes
MGAS2096]
gi|71854039|gb|AAZ52062.1| adenine-specific methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|94542584|gb|ABF32633.1| adenine-specific methyltransferase [Streptococcus pyogenes
MGAS9429]
gi|94546475|gb|ABF36522.1| Adenine-specific methyltransferase [Streptococcus pyogenes
MGAS2096]
Length = 283
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 26/244 (10%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
GN + +L +L +D++ DPPYN+ + + +D WDK
Sbjct: 5 CGNCLELLAELTDGLIDMVITDPPYNISVKNNFATMGRTGIDF--GDWDKGFDL------ 56
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP-NFRGR 143
+W+ + L NG + + + N+ I + + + W K NPMP N R
Sbjct: 57 -LSWIDIASQKLTKNGGMIIFNDWKNLGDIARHCEKNGLVVKDIFRWVKDNPMPRNRDRR 115
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
++ + K + FN + + R ++ P+ +G+E +
Sbjct: 116 YITDSEYGVWVVRKKSK---WVFNRKS------EKYDRPEYRYPVVAGAE-------KTQ 159
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQKP AL+ I+ T G ++LDPF GSG++G R FIG E+ +DY +IA K
Sbjct: 160 HPTQKPVALMKDIITRHTTKGAVVLDPFMGSGSTGVACLLTGRDFIGYELNKDYFNIANK 219
Query: 264 RIAS 267
RIA
Sbjct: 220 RIAE 223
>gi|323170409|gb|EFZ56062.1| DNA methylase family protein [Escherichia coli LT-68]
Length = 263
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 31/251 (12%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--KFSSFE---- 79
GN++ +L + +S+D + DPPY+ + R + + + +F F
Sbjct: 31 GNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGENM 90
Query: 80 ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ +T+ W+ R ++P G V + + + Q F I W K
Sbjct: 91 DARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGRG 150
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
F++ E ++W S K + +D
Sbjct: 151 SRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMTF---------------------P 189
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+K+HPT KPE L++ ++ + G +LDPF GSGT+G A K R FIGIE
Sbjct: 190 VIPSKKMHPTGKPEELMAELVR-TVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSDH 248
Query: 257 YIDIATKRIAS 267
Y D+AT+R+ +
Sbjct: 249 YFDVATQRLKT 259
>gi|224418258|ref|ZP_03656264.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
canadensis MIT 98-5491]
gi|253827583|ref|ZP_04870468.1| putative methylase [Helicobacter canadensis MIT 98-5491]
gi|313141791|ref|ZP_07803984.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
MIT 98-5491]
gi|253510989|gb|EES89648.1| putative methylase [Helicobacter canadensis MIT 98-5491]
gi|313130822|gb|EFR48439.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
MIT 98-5491]
Length = 589
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 26/261 (9%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVD 66
IN++Q++ + I +S S++E + V+ I DPPYN+ + + +
Sbjct: 349 INQDQHTGKNF--TIYNSDSYSMIETFIKQGLKVNHIITDPPYNISQDNNFSTMNSAKRQ 406
Query: 67 AVTD-SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
+ WDK W+ + ++L NG+ + SY + I L+N + +
Sbjct: 407 GIDFGEWDKKFDL-------FNWIKSYSKILDINGSFIIFCSYRFVSHICDTLENSDCVV 459
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+ ++W+KSNPMP RR+ E +WA + N +R+ +
Sbjct: 460 KDILIWQKSNPMPRNISRRYVQDMEFAVWAVKKGAKWVF-------NKPNNKKYLRAMYT 512
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
P+ G ER HPTQK ++ I+ T D++LDPF GSG++G A
Sbjct: 513 APVVRGFER-------TEHPTQKSLKVMQEIIQIHTNKDDLVLDPFMGSGSTGVAAICNG 565
Query: 246 RSFIGIEMKQDYIDIATKRIA 266
R+F+GIE+ + Y +IA KR++
Sbjct: 566 RNFLGIELSKKYYNIALKRLS 586
>gi|323978449|gb|EGB73533.1| DNA methylase [Escherichia coli TW10509]
Length = 268
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/250 (23%), Positives = 101/250 (40%), Gaps = 31/250 (12%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--KFSSFE---- 79
GN++ +L + +S+D + DPPY+ + R + + + +F F
Sbjct: 31 GNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGENM 90
Query: 80 ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ +T+ W+ R ++P G V + + + Q F I W K
Sbjct: 91 DARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGRG 150
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
F++ E ++W S K + +D
Sbjct: 151 SRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMTF---------------------P 189
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+K+HPT KPE L++ ++ ++ G +LDPF GSGT+G A K R FIGIE
Sbjct: 190 VIPSKKMHPTGKPEELMAELVRTA-NSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSDH 248
Query: 257 YIDIATKRIA 266
Y ++A +R+
Sbjct: 249 YFEVAAQRLR 258
>gi|210134245|ref|YP_002300684.1| adenine specific DNA methyltransferase [Helicobacter pylori P12]
gi|210132213|gb|ACJ07204.1| adenine specific DNA methyltransferase [Helicobacter pylori P12]
Length = 230
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/248 (30%), Positives = 115/248 (46%), Gaps = 23/248 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIHHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIVSIHTNPNDIVLDPFMGSGTTGLACKNLQRNFIGIESEKEYF 222
Query: 259 DIATKRIA 266
A KR++
Sbjct: 223 QTAQKRLS 230
>gi|317179855|dbj|BAJ57641.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
Length = 232
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFIVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK L+ +I+ T P DI+LDPF GSGT+G K+L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLDLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
IA KR+
Sbjct: 223 QIAKKRLNLF 232
>gi|221369876|ref|YP_002520972.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
KD131]
gi|221162928|gb|ACM03899.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides
KD131]
Length = 253
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 44/260 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I+ G+ ++ + LP SVD + DPPY + +
Sbjct: 6 TILPGDCLASMRTLPNCSVDAVVTDPPY-------------------------GQTSLPW 40
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ R+LKP G++WV G+ + + W L + + + +F
Sbjct: 41 DRFVYGWMAEIGRILKPTGSVWVFGTLRT---FTQHWREFDGWTLAQDIVWEKHNGSSFH 97
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC---------SGS 192
RF+ HE A Y + A + V+ ++ + G
Sbjct: 98 ADRFRRVHEQAAHFYRGDWASVYKGKVVTMDATAKSVRRKTPPVHMGWIDHGSYVSEDGG 157
Query: 193 ERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
RL R++ G HPTQKP A++ +++++ PG ++LDPF GSGT+G VA +L
Sbjct: 158 PRLMRSVIYSRSEHGRAQHPTQKPAAIIEPLILNACPPGGVVLDPFAGSGTTGGVAARLG 217
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R I E DY+ + +RI
Sbjct: 218 RKAILCEGNTDYLSVMERRI 237
>gi|194439356|ref|ZP_03071434.1| DNA methylase [Escherichia coli 101-1]
gi|194421718|gb|EDX37727.1| DNA methylase [Escherichia coli 101-1]
Length = 268
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 31/250 (12%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--KFSSFE---- 79
GN++ +L + +S+D + DPPY+ + R + + + +F F
Sbjct: 31 GNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGENM 90
Query: 80 ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ +T+ W+ R ++P G V + + + Q F I W K
Sbjct: 91 DARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGRG 150
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
F++ E ++W S K + +D
Sbjct: 151 SRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMTF---------------------P 189
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+K+HPT KPE L++ ++ + G +LDPF GSGT+G A K R FIGIE
Sbjct: 190 VIPSKKMHPTGKPEELMAELVR-TVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSDH 248
Query: 257 YIDIATKRIA 266
Y ++A +R+
Sbjct: 249 YFEVAAQRLR 258
>gi|317179559|dbj|BAJ57347.1| adenine specific DNA methyltransferase [Helicobacter pylori F30]
Length = 232
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/250 (30%), Positives = 113/250 (45%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHANAFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYASLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGIERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
I+ KR+
Sbjct: 223 QISKKRLNLF 232
>gi|315586054|gb|ADU40435.1| site-specific DNA-methyltransferase (adenine-specific)
[Helicobacter pylori 35A]
Length = 232
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/248 (30%), Positives = 111/248 (44%), Gaps = 23/248 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I NS +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHANSFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
R + E +WA + K NE P+ SG E+++
Sbjct: 116 RNINRHYVQDTEFALWAVKKKAKWVF------NKPENEKYLRPLILKSPVVSGLEKVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222
Query: 259 DIATKRIA 266
IA KR+
Sbjct: 223 QIAKKRLN 230
>gi|207092046|ref|ZP_03239833.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
HPKX_438_AG0C1]
Length = 232
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 113/250 (45%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIHHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIKHYAPLVNPNGCMIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG E+++
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLEKVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 223 QTAKKRLNLF 232
>gi|148543440|ref|YP_001270810.1| DNA methylase N-4/N-6 domain-containing protein [Lactobacillus
reuteri DSM 20016]
gi|184152848|ref|YP_001841189.1| hypothetical protein LAR_0193 [Lactobacillus reuteri JCM 1112]
gi|227363589|ref|ZP_03847706.1| adenine-specific methyltransferase [Lactobacillus reuteri MM2-3]
gi|325681783|ref|ZP_08161302.1| DNA (cytosine-5-)-methyltransferase domain protein [Lactobacillus
reuteri MM4-1A]
gi|148530474|gb|ABQ82473.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri DSM
20016]
gi|183224192|dbj|BAG24709.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071385|gb|EEI09691.1| adenine-specific methyltransferase [Lactobacillus reuteri MM2-3]
gi|324978874|gb|EGC15822.1| DNA (cytosine-5-)-methyltransferase domain protein [Lactobacillus
reuteri MM4-1A]
Length = 319
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/282 (25%), Positives = 115/282 (40%), Gaps = 43/282 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+++ +KII G+S V+ +L VDL DPPYNL + D +
Sbjct: 29 DNLQTISNKIINGDSFKVMTQLAPHQVDLALIDPPYNL----------NKQYDGLNF--- 75
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
K S Y +T+ W+ + +LK N +++V + + +L+ R+
Sbjct: 76 KKMSTSQYQTYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEKNFTIQNRITWQRE 135
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN----------------------YDAL 171
+ ++N E + + + YTFN + A
Sbjct: 136 KGRGSQ---KNWKNGMEDIWFLT--ANPSDYTFNVDQVKQRRQVVAPYRQDGVAKDWQAT 190
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
K N M S++ I + HPTQKPE LL++I+++S+ P D I DPF
Sbjct: 191 KNGNFRDTMPSNFWDDISIP---YWSMPENTGHPTQKPEKLLAKIILASSNPNDFIFDPF 247
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
GSG+S A KL R ++GIE Y R+ V+ +
Sbjct: 248 AGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQVKDDPS 289
>gi|308183850|ref|YP_003927983.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
SJM180]
gi|308059770|gb|ADO01666.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
SJM180]
Length = 232
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 112/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWITRYAPLVNPNGCIIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG E+ +
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLEKTK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 223 QTAKKRLNLF 232
>gi|159896851|ref|YP_001543098.1| site-specific DNA-methyltransferase [Herpetosiphon aurantiacus ATCC
23779]
gi|159889890|gb|ABX02970.1| Site-specific DNA-methyltransferase (adenine-specific)
[Herpetosiphon aurantiacus ATCC 23779]
Length = 282
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/278 (22%), Positives = 116/278 (41%), Gaps = 28/278 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+++I+G + V+ + +S++L++ DPP+ R A D W +
Sbjct: 7 NQLIQGEMLDVIGSIAPQSINLLYLDPPFAAG------RVFADSAGAFDDRWQGGLT--E 58
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A+ L+A RR++ +G+L++ + +L +
Sbjct: 59 YLAWLEQRLVAARRIVAEHGSLFLHLDRRAVHYAKVLLDQTWGFECFRNEIIWHYTGGGR 118
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
R F + H+T++W S + +TFN A++ + + I +G L + DG
Sbjct: 119 ARRSFSHKHDTILWYSKH--PQHWTFNLQAMRQPYKASSGFAKAGIRSAAGKRYLPHPDG 176
Query: 201 EKL------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ +PTQKPE LL RI+++++ GD++ D GSGT+ AVA+
Sbjct: 177 TPVDDVWDIPMLNPMAAERLGYPTQKPERLLERIILAASNSGDLVADLCCGSGTTAAVAQ 236
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
+L R +I + D + + R+ L
Sbjct: 237 RLGRCWIAADQSADALALVRGRLRQQAAEWQETLIQPQ 274
>gi|296115112|ref|ZP_06833753.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295978213|gb|EFG84950.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 288
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 56/265 (21%), Positives = 104/265 (39%), Gaps = 33/265 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++G+ + VL ++PA SVD++ PPYN+ L D+ D+ +
Sbjct: 28 HQLVRGDCLKVLRRMPADSVDVVVTSPPYNIGLRYST----------YNDTLDE----QG 73
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGS---------YHNIFRIGTMLQNLNFWILNDIVW 131
Y + A RRV+KP+G+ ++ + + + R+ + N +
Sbjct: 74 YLDWMVAISRQVRRVMKPDGSFFLNIAGSSAQPWLPFELMVRLRALFALQNHISWVKSIS 133
Query: 132 R----KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ P R HE L + S + ++ R
Sbjct: 134 IGAETFGHFKPVNSHRYLHRNHEHLFHLTRSGHVNLQRLDVGVPYMDKSNIVRRGHRQDR 193
Query: 188 ICSGS------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
C G E ++ K + HP P +L + +P ++LDPF G+GT+ A
Sbjct: 194 RCRGDTWFVPYETVQGKAQKYNHPGTFPVSLPQMCIRLHGRPDAVVLDPFMGTGTTIVAA 253
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
+ IGI++ Y++IA +R+
Sbjct: 254 LREGARGIGIDLDSGYVEIARERVR 278
>gi|193069715|ref|ZP_03050666.1| DNA methylase [Escherichia coli E110019]
gi|192956917|gb|EDV87369.1| DNA methylase [Escherichia coli E110019]
Length = 261
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 31/251 (12%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--KFSSFE---- 79
GN++ +L + +S+D + DPPY+ + R + + + +F F
Sbjct: 29 GNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGENM 88
Query: 80 ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ +T+ W+ R ++P G V + + + Q F I W K
Sbjct: 89 DARSWAYWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGRG 148
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
F++ E ++W S K + +D
Sbjct: 149 SRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMTF---------------------P 187
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+K+HPT KPE L++ ++ + G +LDPF GSGT+G A K R FIGIE
Sbjct: 188 VISSKKMHPTGKPEELMAELVR-TVNSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSDH 246
Query: 257 YIDIATKRIAS 267
Y D+AT+R+ +
Sbjct: 247 YFDVATQRLKT 257
>gi|308272438|emb|CBX29042.1| hypothetical protein N47_J00230 [uncultured Desulfobacterium sp.]
Length = 745
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/435 (17%), Positives = 144/435 (33%), Gaps = 98/435 (22%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNLQLNGQL 57
+ + W +K+I G++ +L L + LI+ DPP+++ + +
Sbjct: 78 LFDTRGRQMKGWTNKLIWGDNKLILSSLKNGPLREEIEKQGGLKLIYIDPPFDVGADFSM 137
Query: 58 ----------------------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
+P+ A D+W K + ++ A L+ R +
Sbjct: 138 DIEIPSSFSPEKGGQRGVETFTKKPNILEEIAYRDTWGKGAD--SFIAMIYERLVLMRDL 195
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGR--RFQNAHETL 152
L +G+++V + I +L + + + K P+ + ++ + +
Sbjct: 196 LAEDGSIYVHCDWRVNSYIRLVLDDIFGTSCYRNEIRWKRQPVRGAKATSNQYARNSDGI 255
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDW-------------------------LIP 187
++ S S K D E +
Sbjct: 256 LFYSKSDKWTWNGAYKDYDPKFIETKFRSDTDGRLFRDCDLGDYSEKSISDFEKQGKIYI 315
Query: 188 ICSGSERLRNK-----------------------DGEKLHPTQKPEALLSRILVSSTKPG 224
SG +RL+ + TQKPE+L+ I+ +S+ G
Sbjct: 316 TSSGKKRLKRFLDEEKGESLGDMLVHIPEVNSMAVERTGYATQKPESLVEIIIKASSNEG 375
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
D++ D F GSGT+ AVA+KL R +I ++ + I KR+ VQ E R
Sbjct: 376 DLVADFFCGSGTTAAVAEKLGRKWIATDLGKFAIHTTRKRLIGVQRQLKAE---GKNYRA 432
Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETC 344
+ + I L A+ + + + + K +E
Sbjct: 433 FEILNLGKYERQHYIGINPNLREAEQHKQ----------LEEKEAAFIELILKAYRAEKT 482
Query: 345 NGWNFWYFEKLGELH 359
+G+ ++ +K G L
Sbjct: 483 SGFTAFHGKKAGRLV 497
>gi|320177588|gb|EFW52578.1| Putative methyltransferase [Shigella boydii ATCC 9905]
Length = 261
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 31/253 (12%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWDKFSSFE---- 79
GN++ +L + +S+D + DPPY+ + R + ++S +F F
Sbjct: 29 GNALEILPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNSESLHRFDGFAGENM 88
Query: 80 ---AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ +T+ W+ R ++P G + + + + Q F I W K
Sbjct: 89 DARSWAYWTQLWMAQAHRAVRPGGYALIFTDWRQLPALTDAFQASGFTWRGIIAWNKGRG 148
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
F++ E ++W S K + +D
Sbjct: 149 SRTPHTGYFRHQCEYIVWGSKGHLDKSPSGPFDGCMTY---------------------P 187
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+K+HPT KPE L++ ++ ++ G +LDPF GSGT+G A K R FIGIE +
Sbjct: 188 VIPSKKMHPTGKPEELMAELVRTA-NSGGTVLDPFMGSGTTGVAALKAGRRFIGIETSEH 246
Query: 257 YIDIATKRIASVQ 269
Y ++AT+R+
Sbjct: 247 YFEVATQRLQKTM 259
>gi|325201351|gb|ADY96805.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
M01-240149]
Length = 289
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 39/266 (14%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I +G+ I +++K+ S + PPYN+ + E Y
Sbjct: 38 IYQGDCIQLMDKISKGSFQMTITSPPYNIGKEYESIL-----------------DLEHYL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR- 141
+ W+ + + + +G W+ Y ++ + G + + + N+
Sbjct: 81 EWCERWMQSIHHLTEDSGCFWLNLGYLHVEKKGLAVPIPYLLWDKTNFFLLQEVVWNYAA 140
Query: 142 ----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--------EDVQMRS------- 182
RF +E L+W YTFN DA++ N +
Sbjct: 141 GVACRNRFSPRNEKLLWYVK--NPAKYTFNLDAVRDPNVKYPNQKKNGKLKCNPLGKNPT 198
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D S R R+ HP Q P L+ RI+ +S+ D+ILDPF GSGT+
Sbjct: 199 DVWQIAKVTSGRNRSSRERTAHPAQFPLELIERIIRASSNQNDVILDPFIGSGTTALAGL 258
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
K R IG E+ +YIDI +R
Sbjct: 259 KNNRFVIGFEINDEYIDIIKERFKEY 284
>gi|28916734|gb|AAD39134.2|AF123569_2 NmeSIM [Neisseria meningitidis]
gi|325129400|gb|EGC52233.1| adenine-specific methyltransferase HpaI [Neisseria meningitidis
OX99.30304]
gi|325135457|gb|EGC58076.1| DNA methylase [Neisseria meningitidis M0579]
gi|325207331|gb|ADZ02783.1| DNA methylase [Neisseria meningitidis NZ-05/33]
Length = 283
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 39/266 (14%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I +G+ I +++K+ S + PPYN+ + E Y
Sbjct: 32 IYQGDCIQLMDKISKGSFQMTITSPPYNIGKEYESIL-----------------DLEHYL 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR- 141
+ W+ + + + +G W+ Y ++ + G + + + N+
Sbjct: 75 EWCERWMQSIHHLTEDSGCFWLNLGYLHVEKKGLAVPIPYLLWDKTNFFLLQEVVWNYAA 134
Query: 142 ----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--------EDVQMRS------- 182
RF +E L+W YTFN DA++ N +
Sbjct: 135 GVACRNRFSPRNEKLLWYVK--NPAKYTFNLDAVRDPNVKYPNQKKNGKLKCNPLGKNPT 192
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D S R R+ HP Q P L+ RI+ +S+ D+ILDPF GSGT+
Sbjct: 193 DVWQIAKVTSGRNRSSRERTAHPAQFPLELIERIIRASSNQNDVILDPFIGSGTTALAGL 252
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
K R IG E+ +YIDI +R
Sbjct: 253 KNNRFVIGFEINDEYIDIIKERFKEY 278
>gi|262200004|ref|YP_003271213.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
14365]
gi|262083351|gb|ACY19320.1| DNA methylase N-4/N-6 domain protein [Haliangium ochraceum DSM
14365]
Length = 313
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 41/257 (15%)
Query: 36 PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
SVDL+ ADPPY + + WD F+S EAY + AWL RV
Sbjct: 51 DDGSVDLVVADPPYGI----------------AKERWDDFASLEAYVDWCDAWLAEVARV 94
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
L P G+ +V G + + ++W N G + +HE+++
Sbjct: 95 LSPAGSAYVCGFSEILAEVKARSARRFAGGCRWLIWYYRNKA--NLGSDWGRSHESILHL 152
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK----------------- 198
+ + + G R R++
Sbjct: 153 RKQRRLRLDIDAVRVPYNDHTRKYPERVQAESSQYGQGRRRDRWQPHPLGAKPRDVFEIP 212
Query: 199 ------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ H TQKPE L+ R + +T PG ++LDPF GSGT+ VA++L R +I +
Sbjct: 213 VLCNGMAEKTAHSTQKPEELVRRFIAGTTSPGALVLDPFAGSGTTAVVAQRLGRRWIAGD 272
Query: 253 MKQDYIDIATKRIASVQ 269
Y+ +A +R+
Sbjct: 273 SDARYVGLARERLRDAA 289
>gi|188526859|ref|YP_001909546.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
Shi470]
gi|188143099|gb|ACD47516.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
Shi470]
Length = 232
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 76/250 (30%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHANAFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSATRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ G ER++
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVGGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKHLKRNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
IA KR+
Sbjct: 223 QIAKKRLNLF 232
>gi|329765700|ref|ZP_08257269.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137766|gb|EGG42033.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 258
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 4/247 (1%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI N I ++ +P +DLI DPP+ + + + V +++ + +
Sbjct: 7 NKIYNMNCIEGMKLIPKNKIDLIITDPPFAINFKATKANYNR-ISSRVMQGYNEIKAVDY 65
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
YD F+ W+ R+LK +G+++V ++N+ I L ++ F +N I+W+ +
Sbjct: 66 YD-FSYHWMKEAFRILKDSGSMYVFSGWNNLKDILRALDDVGFITVNHIIWKYQFGVVTK 124
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
R + H + + ++ +++ + + D
Sbjct: 125 RKFVTSHYHCLYVCKDDKQRKFFPFSRFEKNSKSDKGRSLHYKDKEDVWEIKREYWTGDE 184
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ PT+ P L+ ++L S++ DI+LDPF GSG V+K + R +G E+ +Y
Sbjct: 185 KT--PTKLPAELIEKLLHYSSEKKDIVLDPFLGSGQVAVVSKYMNRRHLGFEIVPEYYKF 242
Query: 261 ATKRIAS 267
A KR+
Sbjct: 243 AKKRLDK 249
>gi|227544742|ref|ZP_03974791.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
gi|300909012|ref|ZP_07126475.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
gi|227185282|gb|EEI65353.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
gi|300894419|gb|EFK87777.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
Length = 319
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 73/287 (25%), Positives = 115/287 (40%), Gaps = 43/287 (14%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
I + +++ +KII G+S V+ KL VDL DPPYNL + D +
Sbjct: 24 IIQPTDNLQTISNKIINGDSFKVMTKLSPHQVDLALIDPPYNL----------NKQYDGL 73
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ K S Y A+T+ W+ + +LK N +++V + + +L+
Sbjct: 74 SF---KKMSTSQYQAYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEKNFTIQ--- 127
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------------------- 167
R + RG + + YTFN
Sbjct: 128 --NRITWQREKGRGSLKNWKNGMEDIWFLTANPSDYTFNVDQVKQRRQVVAPYRQDGVAK 185
Query: 168 -YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ A K N M S++ I + HPTQKPE LL++I+++S+ P D
Sbjct: 186 DWQATKNGNFRDTMPSNFWDDISIP---YWSMPENTGHPTQKPEKLLAKIILASSNPNDF 242
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
I DPF GSG+S A KL R ++GIE Y R+ ++ +
Sbjct: 243 IFDPFAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIKDDPS 289
>gi|126464051|ref|YP_001045164.1| DNA methylase N-4/N-6 domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|126105862|gb|ABN78392.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 253
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/261 (25%), Positives = 104/261 (39%), Gaps = 44/261 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I+ G+ ++ + LP SVD + DPPY + +
Sbjct: 6 TILPGDCLASMRTLPDCSVDAVVTDPPY-------------------------GQTSLPW 40
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F W+ R+LKP G++WV G+ + + W L + + + +F
Sbjct: 41 DRFVYGWMPEIARILKPTGSVWVFGTLR---MFTQHWREFDGWTLAQDIVWEKHNGSSFH 97
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNY-------DALKAANEDVQMRSDWLIPIC--SGS 192
RF+ HE A Y + V M G
Sbjct: 98 ADRFRRVHEQAAHFYRGDWASVYKGKVVTMDATAKTARRKTRPVHMGQIERGSYVSEDGG 157
Query: 193 ERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
RL R++ G +HPTQKP A++ +++++ PG ++LDPF GSGT+G VA +L
Sbjct: 158 PRLMRSVIYARSEHGHAVHPTQKPAAIIEPLILNACPPGGVVLDPFAGSGTTGGVAARLG 217
Query: 246 RSFIGIEMKQDYIDIATKRIA 266
R I E DY+ +RI+
Sbjct: 218 RRAILCEGNPDYLSAMERRIS 238
>gi|254778782|ref|YP_003056887.1| Type II adenine methyltransferase [Helicobacter pylori B38]
gi|254000693|emb|CAX28602.1| Type II adenine methyltransferase [Helicobacter pylori B38]
Length = 232
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/250 (29%), Positives = 110/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG E+ +
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLEKTK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 223 QTAKKRLNLF 232
>gi|308273938|emb|CBX30538.1| hypothetical protein N47_K27780 [uncultured Desulfobacterium sp.]
Length = 354
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 59/286 (20%), Positives = 110/286 (38%), Gaps = 41/286 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + ++ + + S+ LIFADPPYN+ WD F S + Y
Sbjct: 81 TLYNEDVVTFFKTIKTSSIQLIFADPPYNIHKA----------------EWDTFESQKEY 124
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ W+ +RVL+PNG+L++ G + + +L + + ++
Sbjct: 125 VDWSMEWIKEAQRVLEPNGSLYICGFSEILADLKWAASSLFKGCKWLVWFYRNKANLT-- 182
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------- 194
+ +HE+L+ S K A+ G+ +
Sbjct: 183 -SDWGRSHESLLHFRKSSKIIFNVDEVRVPYNAHTLKYPHHPQAKSSQYGNGKEYVWSPH 241
Query: 195 ---------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
N + HPTQKP L+ + +++S+ P +++DPF GSGT+ A
Sbjct: 242 PKGAKPKDVFEIPTLTNNSWEREKHPTQKPIELVKKCVLASSNPDGLVVDPFGGSGTTYA 301
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
VA+ R ++G E +Y + +R+ + I + E
Sbjct: 302 VAEAFNRKWLGTETNIEYCNTIKRRLQDRTHIERIADNGEEAEVAE 347
>gi|62422064|gb|AAX82614.1| putative adenine-specific methyltransferase [Lactobacillus reuteri]
Length = 319
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 73/287 (25%), Positives = 115/287 (40%), Gaps = 43/287 (14%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
I + +++ +KII G+S V+ KL VDL DPPYNL + D +
Sbjct: 24 IIQPTDNLQTISNKIINGDSFKVMTKLSPHQVDLALIDPPYNL----------NKQYDGL 73
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ K S Y A+T+ W+ + +LK N +++V + + +L+
Sbjct: 74 SF---KKMSTSQYQAYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEKNFTIQ--- 127
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------------------- 167
R + RG + + YTFN
Sbjct: 128 --NRITWQREKGRGSLKNWKNGMEDIWFLTANPSDYTFNVDQVKQRRQVVAPYRQDGVAK 185
Query: 168 -YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ A K N M S++ I + HPTQKPE LL++I+++S+ P D
Sbjct: 186 DWQATKNGNFRDTMPSNFWDDISIP---YWSMPENTGHPTQKPEKLLAKIILASSNPNDF 242
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
I DPF GSG+S A KL R ++GIE Y R+ ++ +
Sbjct: 243 IFDPFAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIKDDPS 289
>gi|307151884|ref|YP_003887268.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306982112|gb|ADN13993.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
Length = 329
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 72/305 (23%), Positives = 116/305 (38%), Gaps = 56/305 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +G+ + L LP +SVDL+FADPP+NL D VD Y
Sbjct: 28 LYQGDCLKFLSALPDESVDLVFADPPFNLGKQYGEGVSDQMAVD-------------KYI 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
++++ WL RVLK G+L+V G L W + I R P RG
Sbjct: 75 SWSQEWLNESIRVLKSGGSLFVFNLPRWCIEYGAYLNRQGMWFRHWIACRMPKNFP--RG 132
Query: 143 RRFQNAHETLIWASPSPKAKGYTF-----------------------------NYDALKA 173
+R AH L++ + N +
Sbjct: 133 KRMSPAHYGLLYYTKGEPTVFNKIYTPIQVCRHCGGEIRDYGGHRKKLNEKGINLMDVWD 192
Query: 174 ANEDVQMR----------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
A EDV + + +R++ +K P + +L RI+ ++ P
Sbjct: 193 APEDVWEDATEADADEILWTLTEEMWADIPPVRHRQHKKRMPNELAPIMLERIIAMASNP 252
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
G II+DPF GSGT+ A+KL+R +IG E+ + A +R+ ++ + G +
Sbjct: 253 GQIIIDPFGGSGTTFYAAEKLQRYWIGSEIGDT--EPARERLNNLANGLIEQWESARGSK 310
Query: 284 TEPRV 288
+
Sbjct: 311 KSKQQ 315
>gi|290559357|gb|EFD92690.1| Site-specific DNA-methyltransferase [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 316
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 26/229 (11%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+K+ G+++ V+ LP++S+DLI+ DPP+ N + D + V D WD
Sbjct: 91 NKLYWGDNLHVMRTLPSESIDLIYIDPPFFSGRNYNMIFQDKNEVLTFEDIWDGG--LPT 148
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y + A L+ +R+LKP G+++V +H + + + + S
Sbjct: 149 YQIWLNARLVEMKRLLKPTGSIYVHLDWHASHYMKVEMDKIFGYDKFRNEIIWSYQRWTG 208
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---------SDWLIPICSG 191
+FQ H+ +++ + GYTFN + + +
Sbjct: 209 ATDKFQRMHDVILFYTKETD--GYTFNIQTEPYSEKSLHKARRTSIAERGKVISQSYTDD 266
Query: 192 SERLRN-------------KDGEKLHPTQKPEALLSRILVSSTKPGDII 227
R ++ +PTQKPEALL RI+ +S+ GD++
Sbjct: 267 RSRQKSMRDVWDISYINSQAKERLGYPTQKPEALLERIIKASSNKGDVV 315
>gi|238764211|ref|ZP_04625164.1| DNA methylase [Yersinia kristensenii ATCC 33638]
gi|238697624|gb|EEP90388.1| DNA methylase [Yersinia kristensenii ATCC 33638]
Length = 262
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 99/253 (39%), Gaps = 30/253 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFE- 79
+ GN++ +L + + SVD + DPPY+ + R + + +K F F+
Sbjct: 27 TLYCGNALEILPFIKSGSVDALITDPPYSSGATHKSGRTTTTPTSKYLNEENKRFEEFDG 86
Query: 80 ------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + W+ + +K G V + + + Q F + W K
Sbjct: 87 ENMDARSWVLWCSLWMSHACKAVKAGGYSLVFTDWRQLPAATDVFQASGFVWRGIVAWNK 146
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
F++ E ++W S +D
Sbjct: 147 GRGSRTPHTGYFRHQCEYIVWGSKGKLKSSPNGPFDGCLTF------------------- 187
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+KLHPT KPE L++ ++ ++ P IILDPF GSGT+G A K FIGIE
Sbjct: 188 --PVIPSKKLHPTAKPEELMAELVKTA-NPNGIILDPFMGSGTTGVAALKTGCQFIGIES 244
Query: 254 KQDYIDIATKRIA 266
+ Y ++A +R+
Sbjct: 245 NEHYFEVAAQRLQ 257
>gi|134298731|ref|YP_001112227.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134051431|gb|ABO49402.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
MI-1]
Length = 299
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 61/294 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II GN++ VL+ +P ++ + PPY + + + ++ + Y
Sbjct: 19 TIIHGNALEVLKLIPDNTIQCVVTSPPYWGLRDY-----------GIPNQIGAENNLDDY 67
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
+ RRVLK +GTLW+ IG +
Sbjct: 68 INNLASIFREVRRVLKKDGTLWLNIGDSYTSGNRKYRAPDKKTDTKTNVRAMNYRPDTPE 127
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+R+ LQ +++ +DI+W K N MP R +HE + S
Sbjct: 128 GLKPKDLIGVPWRVAFALQVDGWFLRSDIIWNKPNCMPESVKDRPTKSHEYIFLLSK--- 184
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+K Y ++Y ++K +E ++R+ + + + H P L+ + +
Sbjct: 185 SKHYYYDYQSIKEPSETGELRNKRT------VWNVNTQGFKDAHFATFPPELIVPCIKAG 238
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
+K D +LDPFFGSGT G V +L R +IGIE+ Q+YI++AT+RI + +
Sbjct: 239 SKVNDFVLDPFFGSGTVGVVCNELSRRYIGIEISQEYIEMATQRIINTEYAEEE 292
>gi|317010332|gb|ADU84079.1| adenine specific DNA methyltransferase (putative type II)
[Helicobacter pylori SouthAfrica7]
Length = 232
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 71/248 (28%), Positives = 112/248 (45%), Gaps = 25/248 (10%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIHHADAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM- 137
+ W+ ++ PNG + + SY + I L+ F + + I W K+NPM
Sbjct: 61 K-----LLEWIALYAPLVNPNGCMIIFCSYRFMSYIADFLEENGFVVKDFIQWVKTNPML 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
N R Q+ L K N +A P+ SG+ER++
Sbjct: 116 RNLNRRYVQDTEFALWAVKKKAKWVFNKPNNEAYLR-------PLILKSPVVSGTERVK- 167
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPTQK AL+ +I+ T P ++LDPF GSGT+G K L+R+FIGIE++++Y
Sbjct: 168 ------HPTQKSLALMEKIISIHTNPNHLVLDPFMGSGTTGLACKNLKRNFIGIELEKEY 221
Query: 258 IDIATKRI 265
A KR+
Sbjct: 222 FQTAKKRL 229
>gi|308272266|emb|CBX28872.1| Modification methylase BglII [uncultured Desulfobacterium sp.]
Length = 342
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 45/266 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ + +L+ +P +S+ L+ PPYN+ + E Y
Sbjct: 46 LYSGDCLELLKTIPDESLKLVVTSPPYNIGKEYEKRLK-----------------LERYI 88
Query: 83 AFTRAWLLACRRVLKPNGT-LWVIGSYHN-------IFRIGTMLQNLNFWILNDIVWRKS 134
A + C R L P+G+ W +G+Y + + + L + N I+W
Sbjct: 89 DQQAAVIRECVRCLSPDGSICWQVGNYVDNGAIIPLDTMLYPIFTGLGLSMRNRIIWHFE 148
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------------ALKAANEDVQMRS 182
+ + RRF +ET+IW + + Y FN D K N +
Sbjct: 149 HGL--HCSRRFSGRYETIIWFTK---SDEYIFNLDPIRVPQKYPGKKYFKGPNAGKYSCN 203
Query: 183 D---WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ N + HP Q P L+ R+++S T GD + DPF G+GTS
Sbjct: 204 PLGKNPGDLWVIPNVKSNHVEKTGHPCQFPVELIERLVLSMTNEGDRVFDPFLGTGTSII 263
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
A + +R G E YI++A RI
Sbjct: 264 AAIRHKRRGAGAETVTKYINLARDRI 289
>gi|15644681|ref|NP_206851.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
26695]
gi|2313123|gb|AAD07116.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
26695]
Length = 232
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 112/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFPTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIARYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG E+ +
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLEKTK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 223 QTAKKRLNLF 232
>gi|87306946|ref|ZP_01089092.1| DNA modification methylase M.SthI [Blastopirellula marina DSM 3645]
gi|87290319|gb|EAQ82207.1| DNA modification methylase M.SthI [Blastopirellula marina DSM 3645]
Length = 302
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 64/290 (22%), Positives = 110/290 (37%), Gaps = 52/290 (17%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I G++ VL P + +D++ PPY Q + Q D +
Sbjct: 17 LDTIHSGDATVVLADWPDEFIDVVVTSPPYFQQRDYQG-----------EDQIGLEKTPA 65
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVW 131
Y A RR LKP G++WV+ + +R +++ + + +D++W
Sbjct: 66 EYIDRLVALFAQVRRTLKPTGSIWVVLGDKYVSGELLGMPWRFALAMKDAGWILRSDVIW 125
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-TFNYDALKAANEDVQMRSDWLIPICS 190
+K N MP+ R HE + + S S + +E+ +M+
Sbjct: 126 QKPNAMPSSVKTRPTTDHEYVFFFSKSKDYYYDADAIREPHVTFSENSRMKGGRRHFHQR 185
Query: 191 GSERLRNKDG--------------------------------EKLHPTQKPEALLSRILV 218
G K+G + H PE L+ L+
Sbjct: 186 GGTPEAGKNGGSSNLHDARWDQAFHPQGRNKRTVWSISLSKFREAHFAVFPEKLVETCLL 245
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
++ + LDPF GSGT G VA+KL R ++G++ +Y ++A KR+
Sbjct: 246 ATCPAEGVALDPFMGSGTVGVVARKLGRHYLGVDQSAEYCEMARKRLEQD 295
>gi|154150048|ref|YP_001403666.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Methanoregula boonei 6A8]
gi|153998600|gb|ABS55023.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
Length = 239
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 20/246 (8%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D + +G++ ++L+KLPA SVDLI DPP+ + + R +++ +
Sbjct: 10 DTLYEGDACALLKKLPAGSVDLIVTDPPFAI--DFTAQRLNYNRTGGNVIEGYREIPAAE 67
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y FTR W+ R L P+G+++V ++ + I + +N ++W+ + F
Sbjct: 68 YGKFTRRWIKQATRALSPSGSMYVFSGWNRLRDILEGIDAAGLVTINHLIWKYQFGV--F 125
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
++ +H +++ K YTFN EDV + + G
Sbjct: 126 TKNKYVTSHYHILFVVKDRKR--YTFNKLDHYP--EDVWVINREYW------------KG 169
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K PT+ P+ L+ +I+ S+ PGD++LDPF GSGT VA+ R F+G E+ +Y+
Sbjct: 170 KKKTPTKLPKELVQKIIRYSSNPGDLVLDPFLGSGTVAVVARNECRHFLGFEVVPEYVSF 229
Query: 261 ATKRIA 266
A +
Sbjct: 230 ARDALR 235
>gi|255321947|ref|ZP_05363097.1| DNA methylase [Campylobacter showae RM3277]
gi|255301051|gb|EET80318.1| DNA methylase [Campylobacter showae RM3277]
Length = 299
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 66/304 (21%), Positives = 122/304 (40%), Gaps = 72/304 (23%)
Query: 20 KDKIIKGNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSS 77
+KI + + + L P +S+DLI ADPPY V + WD + +
Sbjct: 3 LNKIYNMDCVEGINSLVPDESIDLIIADPPY---------------FKVVGEKWDYIWRT 47
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y +++ W+ RV++ G+ ++ G + + R+ +L++ + I+ K
Sbjct: 48 EEDYLEWSKVWIKEAVRVIRIGGSFYLFGYFRMLSRLLPILEDAGLELRQQIILNKGMQA 107
Query: 138 PNFRG----RRFQNAHETLIWASPSPKAKGYTF---------------NYDALKAANEDV 178
+ R + F N E++++ PK +F N +N
Sbjct: 108 VSGRATKNYKIFPNVTESILFLYKDPKPFAKSFLRQRQKDLCLTAKEINEKLGVKSNGGG 167
Query: 179 QMRSDWLIPICS--GSERLRNK----------------------------------DGEK 202
+C +E L NK ++
Sbjct: 168 MWSIYTGKNVCKQLPTEELWNKLQIILDFDIPYSKISQTYNAQLGITDVWGDINFYSEKR 227
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP+ L+ R++++S+ GDI+LDPF G G++ R++IG E+ ++Y D +
Sbjct: 228 FHPTQKPQKLIDRLVIASSNKGDIVLDPFMGGGSTAVSCVLNSRNYIGFELDKEYYDKSI 287
Query: 263 KRIA 266
+R+
Sbjct: 288 ERLN 291
>gi|118576082|ref|YP_875825.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194603|gb|ABK77521.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 252
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 45/266 (16%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ I LE + K+VDL DPPYNL++ D WD F S E + FT
Sbjct: 2 DCIRFLEGIGDKTVDLAVVDPPYNLKV----------------DKWDTFESQEDFLKFTF 45
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
AW+ LK L+V + N + L + + + ++ +R+
Sbjct: 46 AWMDCLVPKLKETAGLYVFNTPFNSAYMLQHLVEQGL-MFQNWITWDKRDGMSYTKKRYA 104
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKA----------------ANEDVQMRSDWLIPIC- 189
N ET+++ + + YTFN+D ++ + + +C
Sbjct: 105 NGQETILFFTK---SGKYTFNHDDIRVPYESVQRIEHAKTRGILKNGKRWYPNSRGRMCG 161
Query: 190 ----SGSERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
SER + K K+ H T KP ++ RI+ +S+ GD+++D F GSGT+
Sbjct: 162 EIWHMSSERHKVKVNGKVQRLPHKTVKPLDMIKRIITASSNEGDLVIDCFAGSGTTALAC 221
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
K+L R+FIG + + Y+ A +RI +
Sbjct: 222 KQLNRNFIGCDSNEQYVLSARRRIRT 247
>gi|189036164|gb|ACD75432.1| AMDV4_3 [uncultured virus]
Length = 243
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 64/269 (23%), Positives = 107/269 (39%), Gaps = 38/269 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ + ++++L +SVD + DPPY + +V+ DK
Sbjct: 3 TLKQGDCLELMKELKDESVDCVITDPPYGIDFLSHWTNNHKKIVNDSDIRIDK------- 55
Query: 82 DAFTRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+L +R+LKP+G + + G I L+ L +
Sbjct: 56 --LFAQFLPEFKRILKPHGVVCIFSAGGGKKITTALATLELSKHMHLIQTLIWSKGKTDG 113
Query: 140 F---RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G +++ ++ET++ S + Y + + +
Sbjct: 114 SFVGLGWKYRPSYETILIGSKDLNNYAFYPQYSSNVLVYKPYIPQ--------------- 158
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ HPTQKP L+ +L + TK GD +LDPF GSGT+G K+L+R+FIG E+ D
Sbjct: 159 ----KGEHPTQKPIDLMCNLLRNHTKVGDTVLDPFMGSGTTGVACKQLKRNFIGYELDSD 214
Query: 257 YIDIATKRIASVQ-----PLGNIELTVLT 280
Y +A KRI P L V
Sbjct: 215 YFRMAEKRIEETNEPTLSPDERESLEVDE 243
>gi|150009567|ref|YP_001304310.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
8503]
gi|149937991|gb|ABR44688.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
8503]
Length = 654
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 121/342 (35%), Gaps = 72/342 (21%)
Query: 1 MSQKNSLAINENQNSI---FEWKDKIIKGNSISVLEKLPAK-----------SVDLIFAD 46
+ K++ + + +N EW ++++ G+++ ++ L A VDLI+ D
Sbjct: 43 LPAKDTSGLWKGKNEQVINKEWMNRLVYGDNLLAMQALLAGDEATGLPSLRGKVDLIYID 102
Query: 47 PPYNLQLNGQLY----------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
PP++ + + + +P A +D+W +Y L+ R +L
Sbjct: 103 PPFDSKADYRTKINLPGMDIEQKPTVIEQFAYSDTW--QDGTVSYLKMLYPRLVLMRELL 160
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
G+++V +H + ++ ++ P+ F ++ +
Sbjct: 161 SDKGSIYVHIDWHVGAYVKVLMDDVFGKDNFVNNIIWHYGGPSPIKTAFARKYDIIYLYG 220
Query: 157 PSPKAKGYT---------------------FNYDALKAANED---VQMRSDWLIPICSGS 192
+ K + L ED L +G
Sbjct: 221 KTLKRIFNPQYGNIPISVLNRAKKDENGRLWLDQNLGKLKEDTIAKMESEGRLYRTKTGG 280
Query: 193 ERLRNK----------------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
R + + + TQKPEALL RI+ +S+ GD++ D
Sbjct: 281 LRRKQYLDEMEGAQFDNVWDIPIINSQAKEDVGYITQKPEALLERIIKASSNEGDLVCDF 340
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
F GSGT+ AVA++L R +I ++ + + KR +
Sbjct: 341 FGGSGTTAAVAERLGRRWITTDIGKPATLVMRKRFIDQEVKP 382
>gi|188586728|ref|YP_001918273.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351415|gb|ACB85685.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 395
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 63/265 (23%), Positives = 105/265 (39%), Gaps = 22/265 (8%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
N E++++II +S +L K+P +DL+F PPYN L ++
Sbjct: 143 NNAVPKEYENQIICADSEQLLSKMPENCIDLVFTSPPYNFGLEYDNHQ------------ 190
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFR-IGTMLQNLNFWI 125
++ Y L C RV K G + V Y I I
Sbjct: 191 --DAMNWSIYFDKLYRILDECIRVTKYGGRIIVNVQPLFSDYIPIHHFISNFFIKKKLIW 248
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+I+W K+N + + + + + E++ + ++
Sbjct: 249 KAEILWEKNNYNCKYTAWGSWKSPSNPYMKYTWEFLEVFCKGTMKKQGKKENIDISAEEF 308
Query: 186 IPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
G + + K HP+ PE L R++ + GDIILDPF GSGT+ VA +
Sbjct: 309 KEWVYGKWSIAPEKNMKNYKHPSMFPEELARRVMKLFSYQGDIILDPFVGSGTTPVVAHQ 368
Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
R F+GI++ ++Y ++A KRI
Sbjct: 369 NNRRFLGIDISREYCELARKRIDQQ 393
>gi|400289|sp|P30774|MTX1_XANCC RecName: Full=Modification methylase XcyI; Short=M.XcyI; AltName:
Full=N-4 cytosine-specific methyltransferase XcyI
gi|155371|gb|AAA27608.1| methylase [Xanthomonas campestris]
Length = 300
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 66/285 (23%), Positives = 116/285 (40%), Gaps = 57/285 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G++++VL +LP+ SV + PPY + + + + +
Sbjct: 27 TLFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDY-----------GIEEQIGLEVTMPQF 75
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
A +RVL +GTLW+ IG +
Sbjct: 76 LHRLVAIFAEVKRVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVRPDTPVGLKP 135
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+R+ LQ+ +++ +DIVW K N MP R +HE L + ++ Y
Sbjct: 136 KDLMGIPWRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFMFTK---SEKY 192
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
+++ A + + +R+ + K H T P L+ + +ST+PG
Sbjct: 193 FYDWQAAREPADGGGLRNRRS------VWNVNTKPFAGAHFTTFPPELIRPCIHASTEPG 246
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
D +LDPFFGSGT G V + R ++GIE+ +Y+ +A R+
Sbjct: 247 DYVLDPFFGSGTVGLVCQDENRQYVGIELNPEYVTLAADRLQGQN 291
>gi|218441353|ref|YP_002379682.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
gi|218174081|gb|ACK72814.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
Length = 283
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 41/280 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I + + + KLP + +++ PPYN+ + S + Y
Sbjct: 19 LIYNLDCLEGMAKLPNEIINMTVTSPPYNIGKEYE-----------------DILSLDEY 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
A+ + W+ R+ NG+ W+ Y +I + + + + N+
Sbjct: 62 LAWCKRWIQEVYRLTTINGSFWLNLGYISIPKRAKAIPISYLLWDKIPFYLIQEIVWNYG 121
Query: 141 ----RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----------------EDVQM 180
+ F +E +W Y FN D ++ N
Sbjct: 122 AGVAAKKFFSPRNEKFLWYVK--DELNYIFNLDDIRDPNVKYPNQKKNGKIKVNPMGKNP 179
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
W IP + + R HP Q P A++ RI+ +S+ GD+ILDPF GSGT+ V
Sbjct: 180 TDVWQIPKVTSGKN-RASKERTPHPCQYPIAVIDRIIKASSNKGDLILDPFLGSGTTAIV 238
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
A KL RS IG E+ DY ++A KRI + + ++ +
Sbjct: 239 ALKLDRSVIGFEINSDYCEMAVKRIKTFKSEKQTDVIQFS 278
>gi|218962157|ref|YP_001741932.1| Similar to DNA modification methylase [Candidatus Cloacamonas
acidaminovorans]
gi|167730814|emb|CAO81726.1| Similar to DNA modification methylase [Candidatus Cloacamonas
acidaminovorans]
Length = 375
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 61/280 (21%), Positives = 108/280 (38%), Gaps = 33/280 (11%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K Q + K +I +++ ++ LP KS+DL+ DPPYN+ +
Sbjct: 63 KTRFINLNKQCMLDAIKGNVICQDALECIQFLPEKSIDLLIIDPPYNMYKKFNEVTFNK- 121
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ + Y + +W + G+++V + + I T+L+
Sbjct: 122 ------------KTIDEYAEWIDSWFSQIVSKISLTGSVYVCCDWQSSSAIETVLRKH-- 167
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF----------------- 166
++ ++N E + +A+ S K
Sbjct: 168 -LIVRNRITWERDKGRGAKTNWKNCSEDIWFATKSNKYVFNVDKVKIMRKVIAPYRDENG 226
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ K N S + + HPTQKPE LL++++++S+ GD
Sbjct: 227 DPKDWKETNTGNYRLSHPSNFWTDITIPFWSMPENTDHPTQKPEKLLAKLILASSNEGDF 286
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ DPF GSG++ VAKKL R F GIE+ + Y + KR+
Sbjct: 287 VFDPFCGSGSTLVVAKKLNREFSGIEIDEYYCALTLKRLD 326
>gi|15838904|ref|NP_299592.1| site-specific DNA-methyltransferase [Xylella fastidiosa 9a5c]
gi|9107480|gb|AAF85112.1|AE004042_11 site-specific DNA-methyltransferase [Xylella fastidiosa 9a5c]
Length = 243
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 32/257 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSW 72
++ +G+++ +L + + SVD + DPPY + Y + + A
Sbjct: 10 RLHEGDALRLLCDIDSASVDAVITDPPYCSGAMRMSDRFQPTKKKYINNGTKHVAPDFDC 69
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D F + A++ WL CRRV +P G L V + + + +Q+ + +VW
Sbjct: 70 D-FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWD 128
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K+ GR A E ++WAS N A V
Sbjct: 129 KTPACRPQLGRFRSQA-EFIVWASCGL------MNPKAHPVTPVGVFPTG---------- 171
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
EK H KP AL+ ++ P ILDPF GSGT+G A + FIG+E
Sbjct: 172 ----TAPREKRHQVGKPLALMEHLIKIV-PPASTILDPFAGSGTTGVAALRAGHRFIGME 226
Query: 253 MKQDYIDIATKRIASVQ 269
+ Y D+A +R+A
Sbjct: 227 IAPYYCDVAKQRLADRA 243
>gi|308062919|gb|ADO04806.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
Sat464]
Length = 232
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/250 (30%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ G ER++
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVGGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKHLKRNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
IA KR+
Sbjct: 223 QIAKKRLNLF 232
>gi|261403553|ref|YP_003247777.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
M7]
gi|261370546|gb|ACX73295.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
M7]
Length = 293
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 108/295 (36%), Gaps = 46/295 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI + + +++L KS+D++ PPYN+ + Y + S E
Sbjct: 4 NKIYCMDCLEGMKQLKDKSIDVVITSPPYNIGIRYNKYSDNLSR--------------ED 49
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDI 129
Y + + +RVLK +G+ ++ Y N+ R LQN WI +
Sbjct: 50 YLNWIEEVVREIKRVLKDDGSFFINVGYTAKDPWIAFDVANVIRKHFKLQNTIHWIKSIA 109
Query: 130 VWRKS--------------NPMPNFRGRRFQNAHETLIWASPSPK------AKGYTFNYD 169
+ ++ + P R HE + + + A G +
Sbjct: 110 IQKEDVGDYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPYQDK 169
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIIL 228
+ D E +++K+ E+ HP P L + K +++L
Sbjct: 170 SNIKRFNRKGDLRDRGNTWFIPYETIQSKEKERPHPATFPPKLPEMCIKLHGVKKTNLVL 229
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
DPF G G++ +L ++IG E+ + Y +A +RI + + + +
Sbjct: 230 DPFMGIGSTAVACIRLGVNYIGFEIDEYYCRVAEERIKKEFLKTDRKFDNVKENK 284
>gi|238027668|ref|YP_002911899.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
glumae BGR1]
gi|237876862|gb|ACR29195.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
Length = 250
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 75/268 (27%), Positives = 108/268 (40%), Gaps = 42/268 (15%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +W D+ G+ +L +PA D + ADPPY
Sbjct: 1 MSDWLDRCHFGDCRELLPMIPAGVADAVIADPPY-------------------------G 35
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ +D W+ AC R LKP G++WV GS I +++ F DIVWRK N
Sbjct: 36 DTSLKWDRVVDGWIDACARTLKPAGSIWVFGSLRFIAPTFELMERAGFRYSQDIVWRKQN 95
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFN---YDALKAANEDVQMRSDW------LI 186
R + HE + + Y +DA K + W
Sbjct: 96 GTGFHNDRF-RRVHEHAVLFYRGAWSDVYKCPQVTHDARKKQVRRKTRAAHWGDIDRGHY 154
Query: 187 PICSGSERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
G RLR N+ G LHPTQKP L+ ++ S PG I+LDPF GSG++
Sbjct: 155 TSVDGGPRLRTSVIDMRNEHGHALHPTQKPVDLIELMVRYSVPPGGIVLDPFLGSGSTAL 214
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
A + R +IG E+ D D+ +R+
Sbjct: 215 AAIRNGRHWIGCELDPDCRDMQAQRLQQ 242
>gi|315231720|ref|YP_004072156.1| modification methylase [Thermococcus barophilus MP]
gi|315184748|gb|ADT84933.1| modification methylase [Thermococcus barophilus MP]
Length = 312
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 67/268 (25%), Positives = 125/268 (46%), Gaps = 30/268 (11%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
D+II G+ + + KL K V L F DPP+N + + + S
Sbjct: 2 IIDEIILGDCLEWIPKL--KGVHLSFLDPPFNQGKEYRFFNDNLSE-------------- 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E Y + + + +V + G ++ + N + +L+ W L +++ K
Sbjct: 46 EEYWGWMKEVVREIYKVTEKGGAIYFMQREKNTEWVLRILRETG-WTLQNLIIWKKMASA 104
Query: 139 NFRGRRFQNAHETLIWASPSPK-------------AKGYTFNYDALKAANEDVQMRSDWL 185
+ RF A++ + +A+ K A + + + + +
Sbjct: 105 VPQRYRFNKAYQIIAFATKGKKPRVFNKLRVDYPLAPWHKYPRENGIYLTDVWDDIRELT 164
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+G E LR++ G+++H Q P ALL RI++SST PGD++LDPF G+GT+ VAK+L+
Sbjct: 165 SGYFAGDEPLRDESGKRIHLQQSPVALLLRIILSSTMPGDLVLDPFAGTGTTLVVAKQLK 224
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGN 273
R ++GIE+ Y+++ KR++ ++ +
Sbjct: 225 RHYVGIEIDPHYVEVIKKRLSKLRKADD 252
>gi|258541897|ref|YP_003187330.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
gi|256632975|dbj|BAH98950.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01]
gi|256636032|dbj|BAI02001.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-03]
gi|256639087|dbj|BAI05049.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-07]
gi|256642141|dbj|BAI08096.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-22]
gi|256645196|dbj|BAI11144.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-26]
gi|256648251|dbj|BAI14192.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-32]
gi|256651304|dbj|BAI17238.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654295|dbj|BAI20222.1| DNA methyltransferase [Acetobacter pasteurianus IFO 3283-12]
Length = 285
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 33/265 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ G+ + L+++PA+SVD++ PPYN+ L+ + Y PD E Y
Sbjct: 32 IVMGDCLRALKRVPAESVDVVVTSPPYNIGLSYRSY-PDRREE-------------EDYL 77
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGS---------YHNIFRIGTMLQNLNFWILNDIVWR- 132
+ +R+LK +G+ ++ S + R+ + N +
Sbjct: 78 DWMLEVAQQLQRILKDDGSFFLNISGSSAQPWLPFELAVRLRDLFVLQNHISWVKSISVG 137
Query: 133 ---KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ P R HE + + + ++ R C
Sbjct: 138 EDSFGHFKPMNSQRFLHRGHEHVFHFTLHGDVRLDRLRAGVPYKDKSNIARRGHRQDRRC 197
Query: 190 SGS------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
G E +R + + HP P AL + ++ + G +LDPF G+GT+ A++
Sbjct: 198 RGDTWFIPYETVRGRAEKFDHPGTFPVALPEQCILLHGREGARVLDPFMGTGTTLLAAQR 257
Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
L +G+E+ +Y+ IA R+
Sbjct: 258 LGCYGLGMELDPEYVAIARARLKDD 282
>gi|284115629|ref|ZP_06386690.1| adenine-specific DNA methylase [Candidatus Poribacteria sp. WGA-A3]
gi|283829559|gb|EFC33907.1| adenine-specific DNA methylase [Candidatus Poribacteria sp. WGA-A3]
Length = 497
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/321 (21%), Positives = 113/321 (35%), Gaps = 76/321 (23%)
Query: 20 KDKIIKGNSISVLEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDSW 72
K+++ G+ ++V+ SVDLI+ DPP+N + D + +DA D W
Sbjct: 15 KNRLYYGDCLTVMRDFMKLGSVDLIYLDPPFNSNRSYNAIYKDETGRPLPDQLDAFCDLW 74
Query: 73 -----------------------DKFSSFE---------------AYDAFTRAWLLACRR 94
D+ F AY ++ LL +
Sbjct: 75 ELTPERNEALRRMPVLMREQGIDDQVVEFWRLWMNALRGTQPRLLAYMSYMVERLLYMKT 134
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNA----- 148
+LKP G+L++ I M+ + + P+ +
Sbjct: 135 ILKPTGSLYLHCDPTASHYIKVMMDAIFGHQNFRNEIIWSYRRWPSPGRKYQTMHDVILF 194
Query: 149 -----HETLI--------WASPSPKAKGYTFNYDAL------KAANEDVQMRSDWLIPIC 189
H T + K K + + + + R W + I
Sbjct: 195 YAMGEHNTFHVGYEPVSESYAKRFKGKTQILDPETKTRKLTKDEPTKGLPQRDVWELSIL 254
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+GS R + TQKP LL RI+ +S+ PGD+I DPF G GT+ A L R +I
Sbjct: 255 AGSSR-----ERLGYATQKPLTLLERIIQTSSNPGDVIFDPFCGCGTTLEAAHTLNRRWI 309
Query: 250 GIEMKQDYID-IATKRIASVQ 269
GI++ + +A +R+
Sbjct: 310 GIDIAIHAVKRVARRRLEERC 330
>gi|297379272|gb|ADI34159.1| Modification methylase [Helicobacter pylori v225d]
Length = 232
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 110/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPM
Sbjct: 61 -----RLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMQ 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ G ER++
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPENEKYLRPLILKSPVVGGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
IA KR+
Sbjct: 223 QIAKKRLNLF 232
>gi|15611114|ref|NP_222765.1| putative type II DNA modification enzyme (methyltransferase)
[Helicobacter pylori J99]
gi|4154542|gb|AAD05620.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 230
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/248 (30%), Positives = 115/248 (46%), Gaps = 23/248 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIARYASLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGIERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK L+ +I+ + T P D +LDPF GSGT+G K L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLTLMEKIISTHTNPNDTVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222
Query: 259 DIATKRIA 266
IA KR++
Sbjct: 223 QIAQKRLS 230
>gi|261837514|gb|ACX97280.1| adenine-methyltransferase [Helicobacter pylori 51]
Length = 232
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/250 (30%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F I + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVIKDFIQWVKTNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG E+++
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLEKVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK L+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLDLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
IA KR+
Sbjct: 223 QIAKKRLNLF 232
>gi|218886404|ref|YP_002435725.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757358|gb|ACL08257.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 253
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/256 (25%), Positives = 98/256 (38%), Gaps = 32/256 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTDSWD 73
II+G++++VL +LP +SVD + DPPY+ Q + +
Sbjct: 13 TIIQGDALTVLRELPGESVDAVVTDPPYSSGGMTLTARQADPAAKYQTSGTKRSYPAMLG 72
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL C R+ + L V + + +Q + +VW K
Sbjct: 73 DNKDQRSFTTWATLWLTECWRMARDGAPLLVFTDWRQLPSTTDAVQAAGWLWRGLVVWHK 132
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ P F DA + S G
Sbjct: 133 PSARP-----------------------LLGEFRRDAEFLVYAVKRKASPATRNCLPGVL 169
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R EK+H T KP ALL R L++ T+PG ++LDPF G GT+G R F+GIE+
Sbjct: 170 RHNVNPAEKVHLTGKPVALL-RDLLAVTQPGGLVLDPFTGGGTTGMACMATGRRFLGIEL 228
Query: 254 KQDYIDIATKRIASVQ 269
Y IA RIA+
Sbjct: 229 SPQYHRIAVDRIAAAH 244
>gi|329114332|ref|ZP_08243094.1| Modification methylase MjaV [Acetobacter pomorum DM001]
gi|326696408|gb|EGE48087.1| Modification methylase MjaV [Acetobacter pomorum DM001]
Length = 285
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 33/265 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ G+ + L+++PA+SVD++ PPYN+ L+ + Y PD E Y
Sbjct: 32 IVMGDCLRALKRVPAESVDVVVTSPPYNIGLSYRSY-PDRREE-------------EDYL 77
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGS---------YHNIFRIGTMLQNLNFWILNDIVWR- 132
+ +R+LK +G+ ++ S + R+ + N +
Sbjct: 78 DWMLEVAQQLQRILKDDGSFFLNISGSSAQPWLPFELAVRLRDLFVLQNHISWVKSISVG 137
Query: 133 ---KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ P R HE + + + ++ R C
Sbjct: 138 EDSFGHFKPMNSQRFLHRGHEHVFHFTLHGDVRLDRLRAGVPYKDKSNIARRGHRQDRRC 197
Query: 190 SGS------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
G E +R + + HP P AL + ++ + G +LDPF G+GT+ A++
Sbjct: 198 RGDTWFIPYETVRGRAEKFDHPGTFPVALPEQCILLHGREGARVLDPFMGTGTTLLAAQR 257
Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
L +G+E+ +Y+ IA R+
Sbjct: 258 LGCYGLGMELDPEYVAIARARLKDD 282
>gi|282879893|ref|ZP_06288620.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
5C-B1]
gi|281306287|gb|EFA98320.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
5C-B1]
Length = 331
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 74/284 (26%), Positives = 120/284 (42%), Gaps = 39/284 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+K L++N+ + S + D II + L+ +P +LI DPPYNL + +
Sbjct: 24 EKFILSVNDIKTSFAD--DTIINADLFDCLDYIPNGYFNLIIIDPPYNLDKDFHGKKFSS 81
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
DA D + R+W L PNGTL+V G + + ++
Sbjct: 82 MKSDAYED-------------YLRSWFYKVCDKLAPNGTLYVCGDWKCSSSMQRVI---- 124
Query: 123 FWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTF-------------- 166
++ R + RG ++NA E + +A +PK +
Sbjct: 125 -EERLTVINRITWQREKGRGAKSNWKNAMEDIWFAVRNPKDYYFDVDAVMMKRKVIAPYK 183
Query: 167 ---NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
N + + S + HPTQKPE L ++++++STK
Sbjct: 184 VDGNPKDWEETENGNFRITYPSNFWDDISIPFWSMPENTDHPTQKPEKLYAKLVLASTKL 243
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GD I DPF GSGT+ VA+KL RS+ G+E+ ++Y A KR+ +
Sbjct: 244 GDKIFDPFLGSGTTAVVAQKLGRSYCGVEINREYCYWAVKRLMN 287
>gi|190410582|ref|YP_001965996.1| probable DNA modification methyltransferase M.XmaI [Xanthomonas
axonopodis pv. glycines]
gi|2995642|gb|AAC08981.1| DNA modification methyltransferase M.XmaI [Xanthomonas campestris]
gi|59938882|gb|AAX12207.1| probable DNA modification methyltransferase M.XmaI [Xanthomonas
axonopodis pv. glycines]
Length = 300
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/285 (22%), Positives = 115/285 (40%), Gaps = 57/285 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G++++VL +LP+ SV + PPY + + + + +
Sbjct: 27 TLFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDY-----------GIEEQIGLEVTMPQF 75
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
A +RVL +GTLW+ IG +
Sbjct: 76 LHRLVAIFAEVKRVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVRPDTPVGLKP 135
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+R+ LQ+ +++ +DIVW K N MP R +HE L + ++ Y
Sbjct: 136 KDLMGIPWRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFMFTK---SEKY 192
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
+++ A + + +R+ + K H P L+ + +ST+PG
Sbjct: 193 FYDWQAAREPADGGGLRNRRS------VWNVNTKPFAGAHFATFPPELIRPCIHASTEPG 246
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
D +LDPFFGSGT G V + R ++GIE+ +Y+ +A R+
Sbjct: 247 DYVLDPFFGSGTVGLVCQDENRQYVGIELNPEYVTLAADRLQGQN 291
>gi|83590061|ref|YP_430070.1| site-specific DNA-methyltransferase (adenine-specific) [Moorella
thermoacetica ATCC 39073]
gi|83572975|gb|ABC19527.1| Site-specific DNA-methyltransferase (adenine-specific) [Moorella
thermoacetica ATCC 39073]
Length = 470
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 56/263 (21%), Positives = 101/263 (38%), Gaps = 34/263 (12%)
Query: 21 DKIIKGNSISVLEKLPA----KSVDLIFADPPYNLQLNGQLYRP--------DHSLVD-- 66
+ +I+G+++ ++ L + LI+ DPP+ Q N P + +++
Sbjct: 57 NLLIQGDNLQAMQGLLDRGYEGKIHLIYIDPPFFSQDNYSHRVPLAGTAAGQERRVIERA 116
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI----GSYHNIFRIGTMLQNLN 122
A D+W +AY L +R+L NG+++V S++N R L
Sbjct: 117 AYRDTWRGG--IDAYLDMLYPRLQLMKRLLASNGSIYVHLDASISHYNWVRNHDTLLFYV 174
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
++ P P RR + + + S
Sbjct: 175 RDPARFTFNKEYLPYPPGYRRRGSRETK-----GKGYPLDDVWNANPFEFELKGEESLDS 229
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + TQK +LL RI+ +S+ PGD++ D F GSGT+ A+
Sbjct: 230 IQIKSFSR---------EKTGFATQKNLSLLRRIIKASSNPGDLVADFFCGSGTTLVAAE 280
Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
L R ++G E+ + +A KR+
Sbjct: 281 ALDRKWLGCEIGWTGLQVARKRL 303
>gi|317013473|gb|ADU80909.1| putative type II DNA modification enzyme (methyltransferase)
[Helicobacter pylori Gambia94/24]
Length = 230
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 77/248 (31%), Positives = 115/248 (46%), Gaps = 23/248 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVQNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWITRYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPENEKYLRPLILKSPVVSGIERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK L+ +I+ T P DI+LDPF GSGT+G K L+R+FIGIE +++Y
Sbjct: 168 -----HPTQKSLVLMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLKRNFIGIESEKEYF 222
Query: 259 DIATKRIA 266
IA KR++
Sbjct: 223 QIAQKRLS 230
>gi|257468517|ref|ZP_05632611.1| putative methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|317062777|ref|ZP_07927262.1| DNA-methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|313688453|gb|EFS25288.1| DNA-methyltransferase [Fusobacterium ulcerans ATCC 49185]
Length = 255
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 34/268 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I L+K+ SVDL+F DPPYNL + D + + E Y
Sbjct: 3 LYNCDVIDGLKKVENASVDLLFIDPPYNLGKK-------------YKGTIDHWKTDEEYL 49
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN--- 139
+ +WL + LKPNG L+ + S L+ + I S+ +
Sbjct: 50 EWCYSWLEVSLQKLKPNGCLYFMSSTQYGAYFDIYLREKMHILSRIIWEYDSSGVQAKKH 109
Query: 140 ------------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-AANEDVQMRSDWLI 186
+ + + ++ A+ + + NE+ + W
Sbjct: 110 FGSLYEPIIFAVMNKKNYTFNFKDIMVATKTGAQRKLIDYRKNPPVPYNEEKVPGNVWYF 169
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
P R++ HP+QKPEALL RI+ ST D ILD F GS + G V K+L R
Sbjct: 170 PRVR--YRMKEYVE---HPSQKPEALLERIIKVSTNETDTILDLFAGSFSLGMVCKRLNR 224
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNI 274
+IGIE ++Y + +R+ + + N
Sbjct: 225 KYIGIEKSKEYYTVGIERLKDKKEVLNE 252
>gi|193215282|ref|YP_001996481.1| DNA methylase N-4/N-6 domain-containing protein [Chloroherpeton
thalassium ATCC 35110]
gi|193088759|gb|ACF14034.1| DNA methylase N-4/N-6 domain protein [Chloroherpeton thalassium
ATCC 35110]
Length = 267
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 60/289 (20%), Positives = 119/289 (41%), Gaps = 37/289 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSL---- 64
E ++ +K I GN++ V++++P S++L+ PPYNL+ +
Sbjct: 5 ERMKYPEDFLNKFICGNAVDVMKQIPDGSIELVVTSPPYNLKNSTGNGMKDGRGGKWSNA 64
Query: 65 --VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-NIFRIGTMLQNL 121
++ + D + Y + R L R++ NG ++ + + +
Sbjct: 65 ALINGYSHYNDNM-PHDEYVEWQRECLAEMLRIIPENGAIFYNHKWRVQAGLLQDRNDIV 123
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ + + I+ + NF F +E + + N + +
Sbjct: 124 SGFPVRQIIIWRRKGGINFNPGYFLPTYEVIYLIAKP----------------NFKLAKK 167
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
++ I + +NK HP P L+ RI++S+ D++LDPF GSGT+ A
Sbjct: 168 ANAHGDIWEFGQESKNK-----HPAPFPVELIERIILSTDA--DVVLDPFMGSGTTALAA 220
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
K L R FIGI++ +Y ++A +R+A+ + +T + E +
Sbjct: 221 KNLDRQFIGIDISPEYCEMAEERLAN----PMSVIKQITTNKKEKQANL 265
>gi|320007886|gb|ADW02736.1| DNA methylase N-4/N-6 domain protein [Streptomyces flavogriseus
ATCC 33331]
Length = 250
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/268 (19%), Positives = 91/268 (33%), Gaps = 33/268 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV---------TDSW 72
+ +G++++VL+ LP +SV + DPPYN R + +
Sbjct: 4 TLHRGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFP 63
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ +Y ++ L R + V + LQ + I W
Sbjct: 64 GENRDQRSYRSWLTELLTEAYRASTEHAVAMVFTDWRQEPTTSDALQMAGWTWSGTIPWI 123
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K + P G D+ + G
Sbjct: 124 KPSSRPRKGG-----------------------PKQDSEFIIWGVKGSLDNTRDLYLPGH 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
++H TQKP ++ +++ G +LDPF GSG++G A + R F+G+E
Sbjct: 161 YIASQPRKGRVHITQKPVEVMQQLVQ-VCPEGGTVLDPFTGSGSTGVAALREGRRFVGVE 219
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
+ Y D+A +R+ S + EL
Sbjct: 220 LSVHYADVAEERLRSELTKDDFELAGPE 247
>gi|189500013|ref|YP_001959483.1| DNA binding domain-containing protein, excisionase family
[Chlorobium phaeobacteroides BS1]
gi|189495454|gb|ACE04002.1| DNA binding domain protein, excisionase family [Chlorobium
phaeobacteroides BS1]
Length = 365
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/285 (24%), Positives = 110/285 (38%), Gaps = 56/285 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I G++ V+++LP + + PPY + V D Y
Sbjct: 92 TVINGDTREVIKRLPENTFRCVITSPPYWGVRDY-----------GVADQIGAEPDLNDY 140
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-----------------------IGSYHNI------- 111
RRVLKP+GT W+ SY
Sbjct: 141 IHSLVEVFSEVRRVLKPDGTFWLNIGNTYTSGGRKWRQADAKNKGRAMSYRPPTPEGLKK 200
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ + Q +++ NDI+W K N P R AHE L S ++ Y
Sbjct: 201 KDLIGVAWMVAMACQQEGWYLRNDIIWHKPNCQPESVRDRLTVAHEYLFMFSK---SERY 257
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
FN DA++ A + + +E + H P L+ +++ ++ G
Sbjct: 258 FFNQDAIREAYSNGNGMKNKRTVWSINTEPCP-----EAHFAVFPRNLVRPCVLAGSEEG 312
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
D +LDPF+G+GT G VA++L R GIE+ Y+DIA KR + +Q
Sbjct: 313 DAVLDPFYGAGTVGMVAQELNRKCTGIEINDGYVDIARKRTSKIQ 357
>gi|256784498|ref|ZP_05522929.1| DNA methylase [Streptomyces lividans TK24]
gi|289768383|ref|ZP_06527761.1| DNA methylase [Streptomyces lividans TK24]
gi|145244335|gb|ABP49146.1| putative DNA methylase [Streptomyces lividans]
gi|289698582|gb|EFD66011.1| DNA methylase [Streptomyces lividans TK24]
Length = 248
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 33/268 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV---------TDSW 72
+ +G++++VL+ LP +SV + DPPYN R + +
Sbjct: 4 TLHRGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFP 63
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ +Y ++ L R + V + LQ + I W
Sbjct: 64 GENRDQRSYRSWLTELLTEAYRASTEHAVAMVFTDWRQEPTTSDALQMAGWTWSGTIPWI 123
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K + P G D+ + G
Sbjct: 124 KPSSRPRKGG-----------------------PKQDSEFIIWGVKGSLDNTRDLYLPGH 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+++H TQKP ++ +++ G +LDPF GSG++G A + R F+G+E
Sbjct: 161 YIASQPRKDRVHITQKPVEVMQQLVQ-VCPEGGTVLDPFTGSGSTGVAALREGRRFVGVE 219
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
+ Y D+A +R+ + + EL
Sbjct: 220 LSAHYADVAEERLRAELTKEDFELAGPE 247
>gi|317181350|dbj|BAJ59134.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
Length = 232
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/250 (29%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIHHANAFEIIKDFYQQDLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 -----RLLEWIKRYAPLVNPNGCMVIFCSYRFISYIADFLEENGFIVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG E+++
Sbjct: 116 RNINRRYVQDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLEKVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKECF 222
Query: 259 DIATKRIASV 268
IA +R+
Sbjct: 223 QIAKERLNLF 232
>gi|114328990|ref|YP_746147.1| modification methylase MjaV [Granulibacter bethesdensis CGDNIH1]
gi|114317164|gb|ABI63224.1| modification methylase MjaV [Granulibacter bethesdensis CGDNIH1]
Length = 326
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 63/269 (23%), Positives = 102/269 (37%), Gaps = 33/269 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ ++ G+ ++VL L SVD+I PPYNL L Y E
Sbjct: 70 RHRLYCGDCLTVLPFLAEGSVDVIVTSPPYNLDLGYASYLDSRGE--------------E 115
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGS---------YHNIFRIGTMLQNLNFWILNDIV 130
Y + A +RVL P G+ ++ S + I R+ T+ N + V
Sbjct: 116 EYLDWMTQVATALKRVLAPGGSFFLNVSGSPSRPWLPFELIVRLRTLFVLQNHIVWIKSV 175
Query: 131 WRKSNPMPNFR----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+ + +++ R +A E + + K ++ R
Sbjct: 176 ATPAVSVGHYKPVNGKRFLNHAQEHIFHLTHKGDVKLDRLAVGVPYKDKSNIVRRGHAQD 235
Query: 187 PICSGS------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
C G+ E +R+K + LHP P L + ++LDPF G+GT+G
Sbjct: 236 LRCRGNTWFIPYETVRSKSQKFLHPGTFPVTLPRWCIRLHGVADALVLDPFMGTGTTGVA 295
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
A+ IGIE+ Q YI IA R+ +
Sbjct: 296 AQAEGARSIGIELDQGYISIAANRMMEAE 324
>gi|229541605|ref|ZP_04430665.1| DNA methylase N-4/N-6 domain protein [Bacillus coagulans 36D1]
gi|229326025|gb|EEN91700.1| DNA methylase N-4/N-6 domain protein [Bacillus coagulans 36D1]
Length = 556
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/322 (21%), Positives = 117/322 (36%), Gaps = 49/322 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ + IIKGN++ + L ++LI+ DPPYN + D
Sbjct: 168 TEFKDTDNLIIKGNNLLAISSLLKRYEGKINLIYIDPPYNTGTDSF----------GYND 217
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
++ + + F + L +++L P G ++V YH + ++ +
Sbjct: 218 NFKR----STWLTFMKNRLDIAQKLLSPEGAIYVQLDYHQVHYAKVLMDEIFGESNFQRE 273
Query: 131 WRKSNPMPNFRGRRFQN---AHETLIWASPSPKAKGYTFNY------DALKAANEDVQMR 181
+ N H+T+++ S K + NY + N +
Sbjct: 274 IIWRIGWLSGYKTTDNNWIRNHDTILFYSKDYKRLKFIKNYIPKSEFKEIANTNIERYPI 333
Query: 182 SDWLIPICSG---------------SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
D S+ L +D K QK E L+ RI+ + T GDI
Sbjct: 334 EDVWNANEYDDLNSIAIVSFSGETVSKMLTPQDEVKG---QKSEKLIERIIKAHTNEGDI 390
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
+LD F G+GT+ AVA KLRR +I E +IDI +R+ V ++ +
Sbjct: 391 VLDFFGGTGTTAAVAHKLRRRYIVCEQLDKHIDICIRRMNKVIEGEQSGIS-----KKNN 445
Query: 287 RVAFNLLVERGLIQPGQILTNA 308
V L++ Q +
Sbjct: 446 WQGGGSFVYCELVKLNQNYADK 467
>gi|23428395|gb|AAL15431.1| DNA methyltransferase B [Moraxella nonliquefaciens]
gi|52788778|gb|AAU87369.1| MnlI m6A-methyltransferase [Moraxella nonliquefaciens]
Length = 239
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/256 (28%), Positives = 117/256 (45%), Gaps = 22/256 (8%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ + K KI N ++ ++L + + I DPPY + + ++
Sbjct: 3 KKLLNNQKIKIFHDNCLNTFKQLKNDKILINHIITDPPYAISSENNFHTMNNPRKGVDFG 62
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
WD +D WL +L NG++ + SY I +I +++L + + ++
Sbjct: 63 EWD-------WDFNPCLWLDDAYPLLDKNGSMVIFCSYRFISQIIHKIEHLGGVVKDVMI 115
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
W+K NPMP RR+ E +IWA + + + FN A K + P
Sbjct: 116 WQKQNPMPRNINRRYVQDMEFIIWALKNKNS-KWVFNKPANKPYQRG-----FFQTPTLL 169
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G ER + HPTQKP AL+S I+ T +IILDPF G G++G + L R FIG
Sbjct: 170 GKERTK-------HPTQKPLALMSEIIQIHTNENEIILDPFMGVGSTGVACQGLNRYFIG 222
Query: 251 IEMKQDYIDIATKRIA 266
IE + + DIA +R+
Sbjct: 223 IEQDKAWFDIAGQRLN 238
>gi|15669692|ref|NP_248505.1| type II R/M system modification methyltransferase
[Methanocaldococcus jannaschii DSM 2661]
gi|2500156|sp|Q58893|MTM5_METJA RecName: Full=Modification methylase MjaV; Short=M.MjaV; AltName:
Full=N-4 cytosine-specific methyltransferase MjaV
gi|1592134|gb|AAB99509.1| modification methylase, type II R/M system [Methanocaldococcus
jannaschii DSM 2661]
Length = 292
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 107/294 (36%), Gaps = 46/294 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI + + +++L K+VD++ PPYN+ + Y + S E
Sbjct: 4 NKIYCMDCLEGMKQLKDKTVDVVVTSPPYNIGIKYNKYSDNLSR--------------ED 49
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDI 129
Y + + +RVLK +G+ ++ Y N+ R LQN W+ +
Sbjct: 50 YLNWIEEVVKEIKRVLKDDGSFFINVGYTAKDPWIAFDVANVIRKHFKLQNTIHWVKSIA 109
Query: 130 VWRKS--------------NPMPNFRGRRFQNAHETLIWASPSPK------AKGYTFNYD 169
+ ++ + P R HE + + + A G +
Sbjct: 110 IQKEDVGNYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPYQDK 169
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIIL 228
+ D E +++K+ E+ HP P L + K +++L
Sbjct: 170 SNIKRFNRKGDLRDRGNTWFIPYETIQSKEKERPHPATFPPKLPEMCIKLHGVKKTNLVL 229
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
DPF G G++ +L +IG E+ + Y +A +RI + + + K
Sbjct: 230 DPFMGIGSTAIACIRLGIDYIGFEIDEYYCRVAEERIKKELLKTDGKFDNVKNK 283
>gi|332981877|ref|YP_004463318.1| DNA methylase N-4/N-6 domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332699555|gb|AEE96496.1| DNA methylase N-4/N-6 domain protein [Mahella australiensis 50-1
BON]
Length = 314
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 33/269 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S+ + D+ I + S LP + V+L+F DPPYN+ + + + +
Sbjct: 37 SVSDITDRTINQDIFSAARFLPQQFVNLLFVDPPYNMSKTF-----NGNTFNKM------ 85
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S + Y + +WL LKP +L++ G + + I ++ + + + +
Sbjct: 86 --SMDQYTQWLESWLTLLIPALKPIASLYICGDWRSSAAIFEVMSKYFI--IRNRITWER 141
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----------------YDALKAANED 177
++NA E + + + S K N ++
Sbjct: 142 EKGRG-SKTNWKNASEDIWFCTVSNKYTFNAENVKLKRLVKAPYKDGSGQPKDWHYDGKN 200
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + + HPTQKPE LL++I+++S+ PGDIILDPF GSGT+
Sbjct: 201 KYRLTYPSNIWTDITVPFWSMPENTHHPTQKPEKLLAKIILASSNPGDIILDPFLGSGTT 260
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
VAKKL R ++GIE+ Y +A KR+A
Sbjct: 261 SVVAKKLGRRYVGIEIDNTYCCLAEKRLA 289
>gi|282866406|ref|ZP_06275451.1| DNA methylase N-4/N-6 domain protein [Streptomyces sp. ACTE]
gi|282558802|gb|EFB64359.1| DNA methylase N-4/N-6 domain protein [Streptomyces sp. ACTE]
Length = 248
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/268 (18%), Positives = 91/268 (33%), Gaps = 33/268 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV---------TDSW 72
+ +G++++VL+ LP +SVD + DPPYN R + +
Sbjct: 4 TLHRGDALTVLKSLPDQSVDAVITDPPYNSGGRTSADRTGRTARAKYVTSNSAHDLANFP 63
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ +Y ++ L R + V + LQ + + W
Sbjct: 64 GENRDQRSYRSWLTELLTESYRASTEHAVAMVFTDWRQEPTTTDALQMAGWTWSGTMPWI 123
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K P G D+ + G
Sbjct: 124 KPASRPRKGG-----------------------PKQDSEFIVWGVKGSLDNTRDLYLPGH 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
++H TQKP ++ +++ G +LDPF GSG++G A + R F+G+E
Sbjct: 161 YIASQPRKSRVHITQKPVEIMQQLVQ-VCPEGGTVLDPFTGSGSTGVAALREGRRFVGVE 219
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
+ Y D+A +R+ + + +L
Sbjct: 220 LSSHYADVAEERLRAELTKDDFDLAGPE 247
>gi|256810845|ref|YP_003128214.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus fervens
AG86]
gi|256794045|gb|ACV24714.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus fervens
AG86]
Length = 292
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 58/294 (19%), Positives = 108/294 (36%), Gaps = 46/294 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI + + +++L KSVD++ PPYN+ + Y + +
Sbjct: 4 NKIYCMDCLEGMKQLKDKSVDVVVTSPPYNIGIKYNKYSDNLGR--------------DD 49
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDI 129
Y + + +RVLK +G+ ++ Y N+ R LQN WI +
Sbjct: 50 YLNWIEEVVREIKRVLKDDGSFFINIGYTAKDPWIAFDVANVIRKHFKLQNTIHWIKSIA 109
Query: 130 VWRKS--------------NPMPNFRGRRFQNAHETLIWASPSPK------AKGYTFNYD 169
+ ++ + P R HE + + + A G +
Sbjct: 110 IQKEDVGNYPNIIGDIAVGHYKPINSDRFLSIMHEYIFHFTKNGNVKLDKLAIGVPYQDK 169
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIIL 228
+ D E +++K+ E+ HP P L + K +++L
Sbjct: 170 SNIKRFNRKGDLRDRGNTWFIPYETIQSKEKERPHPATFPSKLPEMCIKLHGIKKTNLVL 229
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
DPF G G++ +L ++IG E+ + Y +A +RI N +L + K
Sbjct: 230 DPFMGIGSTAIACIRLGVNYIGFEIDEYYCRVAEERIKKELLKTNRKLDNVRNK 283
>gi|193084125|gb|ACF09792.1| DNA methylase N-4/N-6 [uncultured marine crenarchaeote KM3-153-F8]
Length = 249
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/262 (18%), Positives = 96/262 (36%), Gaps = 20/262 (7%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
S E +++ G+ + ++ +P+ SV L PPYN+ + + D
Sbjct: 2 QSRIELINRVNCGDVMELMSHIPSNSVHLAITSPPYNVGIEYDKH--------------D 47
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL------N 127
++E Y + +RVLK G + I + + +
Sbjct: 48 DKMNYEQYLDWLSKIWRETKRVLKDGGRFALNIGPTGIRDFKPLHHDSANILRKLGFIFR 107
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ M + ++ L+ N + +
Sbjct: 108 TEILWYKQTMLKRTAWGSWKSPSNPHIIPSWEYVLIFSKKSLKLEGDNTKADITKQEFLN 167
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
G ++ + HP PE L+ R++ + + +LD F G+GT VAKK +R+
Sbjct: 168 CSDGYWKIAPEKKRNKHPAPFPEELIYRLIKYYSFKDNTVLDMFGGTGTVAYVAKKNQRN 227
Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
FI I++ ++Y + A+ R+ ++Q
Sbjct: 228 FIHIDISKEYCETASDRLETLQ 249
>gi|289661920|ref|ZP_06483501.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 234
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 38/259 (14%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDA 67
K+++++G+++++L L A S D + DPPY D
Sbjct: 2 KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARAKPPSQKYVQGGGPQLHADF 61
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
V D D+ ++ + WL C RVLK + + + + LQ F
Sbjct: 62 VGDERDQ----RSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRG 117
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
VW K+ + GR A E ++W S M D P
Sbjct: 118 ITVWDKTEGVRPQLGRFRNQA-EYIVWGSKG--------------------NMPLDRRAP 156
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ G R + +K H T KP L+ ++ + G ++DPF GSGT+ A+
Sbjct: 157 VLPGVIREAVRKNDKHHLTGKPTELMRHLVRIC-EVGGRVIDPFAGSGTTLLAAQLEGYE 215
Query: 248 FIGIEMKQDYIDIATKRIA 266
+ GIEM Y+ +A+ R+
Sbjct: 216 WTGIEMTPHYLQVASDRLR 234
>gi|206479999|ref|YP_002235510.1| putative methyltransferase [Burkholderia cenocepacia J2315]
gi|195945155|emb|CAR57782.1| putative methyltransferase [Burkholderia cenocepacia J2315]
Length = 217
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 41/243 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ + + KL +SVD I DPPY L R S+ + V W
Sbjct: 4 LYNGDCLVAMPKLAPESVDCIVTDPPY---LVNFRDRSGRSIANDVNGDW---------- 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
RVLK + ++ + + F + V+ KS
Sbjct: 51 --LAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYAS----- 103
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
KA + +++ + I G +
Sbjct: 104 -----------------KAGLVKYQHESAYLLAKGRPAAPAAPIADVMPF----PYSGNR 142
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT+KP A L ++ + T+PGD++LDPF GSG++ A++L R +IGIE+ Y A
Sbjct: 143 HHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDPTYFAAAK 202
Query: 263 KRI 265
R+
Sbjct: 203 ARL 205
>gi|147679002|ref|YP_001213217.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
gi|146275099|dbj|BAF60848.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
Length = 318
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/295 (22%), Positives = 114/295 (38%), Gaps = 62/295 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
II G++++ L++LP ++V PPY + + D Y
Sbjct: 39 IITGDALTALKQLPEETVQTCVTSPPYWGLRDY-----------GIPDQIGTEMDVCEYL 87
Query: 83 AFTRAWLLACRRVLKPNGTLWVIG-------------------SYHNI------------ 111
+RVLKP+GT W+ + H +
Sbjct: 88 DKLVKVFREVKRVLKPDGTFWLNMGDGYTSGGRTYRAPDKKTDNDHVVRGLPFRPPTPAG 147
Query: 112 ----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+R+ +LQ +++ DI+W K N +P R AHE + + + +
Sbjct: 148 LKPKDLLGLPWRLAFLLQEDGWYLRADIIWFKPNILPESVKDRPTIAHEYIFLLTKNERY 207
Query: 162 KG-YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
Y + + RS W + E H P +L+ +++
Sbjct: 208 YYDYQAILEPAVSGKGYRNKRSVWAVNTEPYPE---------AHFATFPPSLVLPCILAG 258
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
+KP D++LDPF GSGT+G VA + +R+FIGIE+ +Y +A KR+ + E
Sbjct: 259 SKPDDLVLDPFLGSGTTGLVALQKKRNFIGIELNPEYCALAEKRLTPYAMILKNE 313
>gi|296142046|gb|ADG95997.1| N6-adenine methyltransferase [Helicobacter pylori]
Length = 230
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 112/250 (44%), Gaps = 24/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 2 QIYHANAFEIIKDFYQQNLKVDAIITDPPYNISVKNHFSTLKSAKRQGIDFGEWDK--NF 59
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I L+ F + + I W K+NPMP
Sbjct: 60 K-----LLEWIKRYAPLVNPNGCMVIFCSYRFISY-ADFLEENGFMVKDLIQWVKTNPMP 113
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ G ER++
Sbjct: 114 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPENEKYLRPLILKSPVVGGLERVK-- 165
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L R+FIGIE++++Y
Sbjct: 166 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIELEKEYF 220
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 221 QTAKKRLNLF 230
>gi|326802743|ref|YP_004320561.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651281|gb|AEA01464.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
ACS-120-V-Col10a]
Length = 371
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 61/288 (21%), Positives = 112/288 (38%), Gaps = 49/288 (17%)
Query: 19 WKDKIIKGNSISVLEKLPAKS-----------VDLIFADPPYNLQLNGQLYRPDHSLVDA 67
W++ I+ G+++ L+ + V LI+ DPP+ Q + + A
Sbjct: 81 WRNMIVFGDNLQFLKTINENKDPLIKDKVKGKVKLIYIDPPFATQDEFE----NKEGAKA 136
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML---QNLNFW 124
+D + F R L+ + +L +G+++V + I T++ N +
Sbjct: 137 YSDK----KKGSEFLEFIRRRLILAKEILSDDGSIYVHLDEKMVDYIKTIMDEIFGKNNY 192
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL------------- 171
I + K++ + + H+ +++ S S
Sbjct: 193 KRQIIWFTKTSSGYKTKAENWIRGHDVILYYSKSDNPIFNKQYILDYKKEYLARFKKIDD 252
Query: 172 --------------KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
+ +E + + + ++ +PTQKPE LLSRI+
Sbjct: 253 NGRKYRDDRSNGERQYLDELKGIAINDVWDDIMSFQQAATSKEITGYPTQKPEELLSRII 312
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ST GD+I+D F GSGTS AVA+KL R +I ++ + KRI
Sbjct: 313 KASTNEGDLIMDFFGGSGTSMAVAEKLGRRWITCDLGKLAFLTMQKRI 360
>gi|194467616|ref|ZP_03073603.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri 100-23]
gi|194454652|gb|EDX43549.1| DNA methylase N-4/N-6 domain protein [Lactobacillus reuteri 100-23]
Length = 319
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 43/287 (14%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
I + +++ +KII G+S V+ +L VDL DPPYNL + D +
Sbjct: 24 IIHSTDNLQTISNKIINGDSFKVMTQLAPYQVDLALIDPPYNL----------NKQYDGL 73
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
K S Y +T+ W+ + +LK N +++V + + +L+
Sbjct: 74 NF---KKMSTSKYQTYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEKNFTIQ--- 127
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------------------- 167
R + RG + + YTFN
Sbjct: 128 --NRITWQREKGRGSLKNWKNGMEDIWFLTANPSDYTFNVDQVKQRRQVVAPYRQDGVAK 185
Query: 168 -YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ A K N M S++ I + HPTQKPE LL++I+++S+ P D
Sbjct: 186 DWQATKNGNFRDTMPSNFWDDISIP---YWSMPENTGHPTQKPEKLLAKIILASSNPNDF 242
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
I DPF GSG+S A KL R ++GIE Y R+ ++ +
Sbjct: 243 IFDPFAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIKDDPS 289
>gi|307636736|gb|ADN79186.1| Adenine-specific methyltransferase [Helicobacter pylori 908]
gi|325995322|gb|ADZ50727.1| Adenine-specific methyltransferase [Helicobacter pylori 2018]
gi|325996920|gb|ADZ49128.1| Adenine-specific methyltransferase [Helicobacter pylori 2017]
Length = 232
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 75/250 (30%), Positives = 113/250 (45%), Gaps = 23/250 (9%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I N+ +++ VD I DPPYN+ + + + WDK +F
Sbjct: 3 QIYHANAFEIIKDFHQQNLKVDAIITDPPYNISVQNNFSTLKSAKRQGIDFGEWDK--NF 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ W+ ++ PNG + + SY I I L+ F + + I W K+NPMP
Sbjct: 61 K-----LLEWIARYAPLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNIHRRYVQDTEFALWAVKKKAKWVF------NKPENEKYLRPLILKSPVVSGIERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQK AL+ +I+ T P +++LDPF GSGT+G K L+R FIGIE +++Y
Sbjct: 168 -----HPTQKSLALMEKIVSIHTNPNNVVLDPFMGSGTTGLACKNLKRKFIGIESEKEYF 222
Query: 259 DIATKRIASV 268
A KR+
Sbjct: 223 QTAQKRLNLF 232
>gi|21221931|ref|NP_627710.1| DNA methylase [Streptomyces coelicolor A3(2)]
gi|4678636|emb|CAB41209.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
Length = 248
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 91/268 (33%), Gaps = 33/268 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV---------TDSW 72
+ +G++++VL+ LP +SV + DPPYN R + +
Sbjct: 4 TLHRGDALTVLKSLPDESVQAVITDPPYNSGGRTSSDRTGRTARAKYVTSNSAHDLANFP 63
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ +Y ++ L R + V + LQ + I W
Sbjct: 64 GENRDQRSYRSWLTELLTEAYRASTEHAVTMVFTDWRQEPTTSDALQMAGWTWSGTIPWI 123
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K + P G D+ + G
Sbjct: 124 KPSSRPRKGG-----------------------PKQDSEFIIWGVKGSLDNTRDLYLPGH 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
++H TQKP ++ +++ G +LDPF GSG++G A + R F+G+E
Sbjct: 161 YIASQPRKGRVHITQKPVEVMQQLVQ-VCPEGGTVLDPFTGSGSTGVAALREGRHFVGVE 219
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
+ Y D+A +R+ + + EL
Sbjct: 220 LSAHYADVAEERLRAELTKDDFELAGPE 247
>gi|116687306|ref|YP_840552.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|116653021|gb|ABK13659.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
HI2424]
Length = 327
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 41/243 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ + + KL +SVD I DPPY L R S+ + V W
Sbjct: 114 LYNGDCLVAMPKLAPESVDCIVTDPPY---LVNFRDRSGRSIANDVNGDW---------- 160
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
RVLK + ++ + + F + V+ KS
Sbjct: 161 --LAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYAS----- 213
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
KA + +++ + I G +
Sbjct: 214 -----------------KAGLVKYQHESAYLLAKGRPAAPAAPIADVMPF----PYSGNR 252
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT+KP A L ++ + T+PGD++LDPF GSG++ A++L R +IGIE+ Y A
Sbjct: 253 HHPTEKPVAALRTLISAFTQPGDVVLDPFAGSGSTCVAARELGRRYIGIELDATYFAAAK 312
Query: 263 KRI 265
R+
Sbjct: 313 ARL 315
>gi|330822157|ref|YP_004350985.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
gi|327374309|gb|AEA65662.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
Length = 218
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 41/245 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + L +L +SVD + DPPY + D + + ++
Sbjct: 3 LLYNGDCLVALPQLARESVDCVITDPPY---------------LVNFRDRSGRSIANDSN 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + ++ + R ++ F + IV+ K+
Sbjct: 48 DEWLDPAFIEIYRVLKRDTVCVSFYGWNKVDRFFHAWKSAGFRVCGHIVFTKTYAS---- 103
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
KA + +++ + + I E G
Sbjct: 104 ------------------KAGLVKYQHESAYVLAKGRPAAPENPIGDVQRFE----YSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPT+KP + L ++ S +KPGD ILDPF GSG++ A++L R +IGIE+ + Y A
Sbjct: 142 KHHPTEKPVSALRTLISSFSKPGDTILDPFAGSGSTCVAARELGRRYIGIELDETYFAAA 201
Query: 262 TKRIA 266
R++
Sbjct: 202 KTRLS 206
>gi|255513890|gb|EET90155.1| DNA methylase N-4/N-6 domain protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 314
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 77/304 (25%), Positives = 120/304 (39%), Gaps = 71/304 (23%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFE 79
DKII G++ISV+ +LPAKSVDL ADPPY V + WD K+ + E
Sbjct: 19 DKIINGDAISVMGRLPAKSVDLTIADPPY---------------FKTVNEKWDFKWRTEE 63
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y +T W+ R+ K N + W+ G + +I + + F IV K +
Sbjct: 64 DYLVWTEKWIKELSRIAKTNSSFWLFGYVKLLSKILPIAEKYGFVFRQQIVVDKGMRSIS 123
Query: 140 FRG----RRFQNAHETLIWASPSPKAKGYTF---------------NYDALKAANEDVQM 180
R + F E++ + + + F N N
Sbjct: 124 GRKTSTYKMFPTTTESIFFFVKNNQPNIKKFLKERQKELGFTAKEINEKLHVKTNGGGVW 183
Query: 181 ----------RSDWLIPICSGSERLRNK--------------------------DGEKLH 204
+ E L+ K ++ H
Sbjct: 184 SLYTGENILAQIPTREMWDRLQEILKFKMDYSEVNFTFNPQMGFSDVWTDIDFYKEDRNH 243
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
TQKP L+ R++++S+ G+++LDPF GSGT+ + +L R FIGIE+ + Y IA +R
Sbjct: 244 STQKPLKLIERLVIASSNKGNLVLDPFLGSGTTAVASMRLGRKFIGIEIDKKYSKIAEQR 303
Query: 265 IASV 268
I +
Sbjct: 304 IKTE 307
>gi|21243368|ref|NP_642950.1| site-specific DNA-methyltransferase [Xanthomonas axonopodis pv.
citri str. 306]
gi|21108915|gb|AAM37486.1| site-specific DNA-methyltransferase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 233
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 63/255 (24%), Positives = 100/255 (39%), Gaps = 35/255 (13%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTD 70
K+++++G+++++L L A S D + DPPY Y D D V D
Sbjct: 2 KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
D+ ++ + WL C RVLK + + + + LQ F V
Sbjct: 62 ERDQ----RSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLTLTTDALQIAGFTWRGITV 117
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
W K+ + GR A E ++W S M D P+
Sbjct: 118 WDKTEGVRPQLGRFRNQA-EYIVWGSKG--------------------NMPLDRRAPVLP 156
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G R + +K H T KP L+ +++ + G +LDPF GSGT+ A+ +G
Sbjct: 157 GVIRESVRKADKHHLTGKPTELMRQLVRIC-EAGGRVLDPFAGSGTTLVAAQLEGFEAVG 215
Query: 251 IEMKQDYIDIATKRI 265
IEM Y + R+
Sbjct: 216 IEMTDQYATVTRDRL 230
>gi|49188496|ref|YP_025343.1| Pac25I methylase [Pseudomonas alcaligenes]
gi|5123478|gb|AAD40332.1|U88088_6 Pac25I methylase [Pseudomonas alcaligenes]
Length = 300
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 57/284 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G++++VL +LP+ SV + PPY + + + + +
Sbjct: 27 TLFEGDALTVLRRLPSGSVRCVVTSPPYWGLRDY-----------GIEEQIGLEGTMPQF 75
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
A RRVL +GTLW+ IG +
Sbjct: 76 LHRLVAIFAEVRRVLTDDGTLWLNIGDGYTSGNRGYRAPDKKNPARAMDVRPDTPEGLKP 135
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+R+ LQ+ +++ +DIVW K N MP R +HE L + ++ Y
Sbjct: 136 KDLIGIPWRLAFALQDDGWYLRSDIVWNKPNAMPESVKDRPARSHEFLFMLTK---SEKY 192
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
+++ A++ + +R+ + K H P L+ + +ST+PG
Sbjct: 193 YYDWQAVREPADGGGLRNRRS------VWHVNTKPFAGAHFATFPPDLIRPCIQASTEPG 246
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
D +LDPFFGSGT G V + R ++GIE+ +Y+ +A R+
Sbjct: 247 DYVLDPFFGSGTVGLVCQDENRQYVGIELNPEYVALAADRLQGQ 290
>gi|307317588|ref|ZP_07597027.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
gi|306896746|gb|EFN27493.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
Length = 286
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 72/282 (25%), Positives = 116/282 (41%), Gaps = 61/282 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I +G++++VL++LP + I PPY + + D + +
Sbjct: 19 IFEGDALTVLQRLPDQHAQCIVTSPPYWGLRDYN-----------IDDQIGLEPTLPQFI 67
Query: 83 AFTRAWLLACRRVLKPNGTLWV-IGSYHNI------------------------------ 111
+ RRVL+ +G LW+ IG
Sbjct: 68 NSLVSVFREARRVLRDDGVLWLNIGDGFTSGNRGWRAPDKKNPARAMTVRPNTPEGLKRK 127
Query: 112 ------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+R+ LQ+ +++ DI+W K N MP R +HE L S + Y
Sbjct: 128 DLLGIPWRLAFALQDDGWYLRADIIWNKPNAMPESVRDRPTRSHEYLFMFSKQ---EQYV 184
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
++ + +K AN RS W + H P+ L+ L ++T+PGD
Sbjct: 185 YDRETVKEAN-GRNRRSVWD---------INTSPFPGAHFATFPKKLVEPCLKATTRPGD 234
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+LDPFFGSGT G VA++LRR +IGIE+ Y+ +A R+ +
Sbjct: 235 FVLDPFFGSGTVGLVAQQLRRKYIGIELNPAYVALAADRLKT 276
>gi|94268294|ref|ZP_01291133.1| DNA methylase N-4/N-6 [delta proteobacterium MLMS-1]
gi|93451668|gb|EAT02451.1| DNA methylase N-4/N-6 [delta proteobacterium MLMS-1]
Length = 622
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 67/387 (17%), Positives = 125/387 (32%), Gaps = 94/387 (24%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNLQLNGQ 56
++ + W +K+I G++ +L L + LI+ DPP+++ +
Sbjct: 79 FDVDARGRQLKGWTNKLIWGDNKLILSSLKNGPLREEIEAQGGLKLIYIDPPFDVGADFS 138
Query: 57 L----------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ RP A D+W K + ++ A ++ R +L NG+++V
Sbjct: 139 MDIEIGGDTFTKRPSFLEEIAYRDTWGKGAD--SFIAMIYERMILLRDLLAENGSIYVHC 196
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG--- 163
+ I ++ + N + + H++L + S + K
Sbjct: 197 DWRVNSFIRVVMDEVFGVDNNRGEIIWKRASAHSDSSAYGQVHDSLYYFSKARKPIWNSP 256
Query: 164 ------YTFNYDALKAANEDVQMRSDW----------LIPICSGSERLRNKDGEKL---- 203
+ + + + SD G E L K+
Sbjct: 257 LTKYEEWYLDRYYRYTDVDGRKFMSDNLSAKGLSGGGYRYTWKGCEGLWRCPESKMQQLD 316
Query: 204 ----------------------------------------------HPTQKPEALLSRIL 217
+PTQKPEA+L RI+
Sbjct: 317 AESRIFYTKNGVPRLKRFIDEMEGRPVQSVWDDIQSVVSWARETETYPTQKPEAILERII 376
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
+S+ GD++ D F GSGT+ AVA+KL R +I ++ + + KR+ VQ +
Sbjct: 377 KASSNEGDLVADFFCGSGTTAAVAEKLGRRWICTDLGKFAVHTTRKRMIGVQRQLKKDGR 436
Query: 278 VLTGKRTEPRVAFNLLVERGLIQPGQI 304
R + + I
Sbjct: 437 DY---RAFEILNLGKYERQHFIGVNPN 460
>gi|28199209|ref|NP_779523.1| site-specific DNA-methyltransferase [Xylella fastidiosa Temecula1]
gi|182681938|ref|YP_001830098.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
M23]
gi|28057315|gb|AAO29172.1| site-specific DNA-methyltransferase [Xylella fastidiosa Temecula1]
gi|182632048|gb|ACB92824.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
gi|307578197|gb|ADN62166.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 243
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 63/255 (24%), Positives = 101/255 (39%), Gaps = 32/255 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSW 72
++ +G+++ +L + + SVD + DPPY + Y + + A
Sbjct: 10 RLHQGDALRLLCGIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDC 69
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D F + A++ WL CRRV +P G L V + + + +Q+ + +VW
Sbjct: 70 D-FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWD 128
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K+ GR A E ++WAS M G
Sbjct: 129 KTPACRPQLGRFRSQA-EFIVWASCGL--------------------MNPKAHPVTPVGV 167
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
EK H KP AL+ ++ P +LDPF GSGT+G A + FIG+E
Sbjct: 168 FATGTAPREKRHQVGKPLALMEHLVKIV-PPASTVLDPFAGSGTTGVAALRAGHRFIGME 226
Query: 253 MKQDYIDIATKRIAS 267
+ Y D+ +R+A
Sbjct: 227 LSPWYCDVTKQRLAD 241
>gi|308270591|emb|CBX27203.1| hypothetical protein N47_A12320 [uncultured Desulfobacterium sp.]
Length = 421
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 68/334 (20%), Positives = 119/334 (35%), Gaps = 48/334 (14%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
M ++ S +N + S ++I + +++ S+D FADPPYN++
Sbjct: 20 MKKRTSFEVNNSGES------RLINKDCFEAFKEIRDNSIDFAFADPPYNIKKKYH---- 69
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+W+ + Y + WL RV+KP T+ V+ + R +++
Sbjct: 70 ----------NWNDAIDIKEYFVWCDKWLDELARVIKPGRTVAVLNIPQWLVRHFQHIKS 119
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA------------------- 161
+ P+ R+ AH ++ S
Sbjct: 120 KLDFQSWITWEALGLPV-----RKIMPAHYGILCMSKGEPRGAVGRIEKINWDTRYYELN 174
Query: 162 ---KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
+ Y + +K N + L + RL++ HP Q P L+ R++
Sbjct: 175 TLKQWYCVRHQCIKIRNSIKLTDREELSDLWWDIHRLKHNSKRVDHPCQLPPQLMRRLIG 234
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
T G+ +LDPF G+GT+ +A++L R FIG E+ Y IA R G
Sbjct: 235 LYTIEGECVLDPFNGAGTTTLIAQELGRRFIGFELSGVYHKIALNR-HDELGSGIDPFAK 293
Query: 279 LTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI 312
T L ++ + P + L I
Sbjct: 294 KKSTPTAKNSRVKRLKKQKYLIPKKTLQLEVKRI 327
>gi|170017230|ref|YP_001728149.1| site-specific DNA-methyltransferase [Leuconostoc citreum KM20]
gi|169804087|gb|ACA82705.1| Site-specific DNA-methyltransferase [Leuconostoc citreum KM20]
Length = 610
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 41/281 (14%)
Query: 17 FEWKDKIIKGNSISVLEKL-----------PAKS--VDLIFADPPYNLQLNGQLYRPDHS 63
EW +KII G+++ VL+ L S V +++ DPP+ + + Q +
Sbjct: 76 NEWINKIIFGDNLQVLKTLIEWKKDGLLKNKDGSDGVRVVYIDPPFASKQDFQ-----NK 130
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
A +D Y + R L+ R +L +G ++V +H + + ++ +
Sbjct: 131 DQKAYSDKLKGV----EYLEWLRKRLILLREILADDGNIFVHLDWHKMHYVKVLMDEIFG 186
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
S F H+ +++ S K K + + ++
Sbjct: 187 EANFVNDIVWSYRTGRGGNSEFNKQHDDILFYSKQQKHKFNPQREKSYTKSKNRKPGLTN 246
Query: 184 W------LIPICSGSERLRN-------------KDGEKLHPTQKPEALLSRILVSSTKPG 224
+ G R + +PTQKPEALL I+ S++ G
Sbjct: 247 YGKATTEFFEDAQGVYRWSSMRDVWDIPYINSQSKERVGYPTQKPEALLEIIIGSASDAG 306
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
D++LD F GSG + AVA+K+ R +I ++ + I + KRI
Sbjct: 307 DLVLDLFGGSGVTAAVAEKMDRRWITGDVGKLSIYVIQKRI 347
>gi|330822254|ref|YP_004362475.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
gi|327374091|gb|AEA65445.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
Length = 218
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 41/245 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + L +L +SVD + DPPY + D + + ++
Sbjct: 3 LLYNGDCLVALPQLARESVDCVITDPPY---------------LVNFRDRSGRSIANDSN 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + ++ + R ++ F + IV+ K+
Sbjct: 48 DEWLDPAFVEIYRVLKRDTVCVSFYGWNKVDRFFHAWKSAGFRVCGHIVFTKTYAS---- 103
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
KA + +++ + + I E G
Sbjct: 104 ------------------KAGLVKYQHESAYVLAKGRPAAPENPIGDVQRFE----YSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPT+KP + L ++ S +KPGD ILDPF GSG++ A++L R +IGIE+ + Y A
Sbjct: 142 KHHPTEKPVSALRTLISSFSKPGDTILDPFAGSGSTCVAARELGRRYIGIELDETYFAAA 201
Query: 262 TKRIA 266
R++
Sbjct: 202 KTRLS 206
>gi|294789831|ref|ZP_06755059.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
29453]
gi|294482213|gb|EFG29912.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
29453]
Length = 224
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 34/245 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I G+ + +L+K+P SVD + DPPY + + + FS
Sbjct: 5 KLIHGDCLDLLKKIPDGSVDCVITDPPYYVGMTHNAQKA-------------VFSDLMML 51
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F +RV+K G ++V + + + + + N +VW K +
Sbjct: 52 KPFFTQLFNELKRVVKKGGFIYVFTDWRTLPFLQPIFDEI-LGAKNLLVWDKIVGRVSP- 109
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
++ HE +++A+ +E S + S + +
Sbjct: 110 --YYRYQHEFILFAT---------------NGTSERKIYASSIIKEKSFSS--GAHSTNK 150
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKP L R++ T GD++LD F GSG G +L R FIG E+ ++Y + A
Sbjct: 151 KIHPTQKPVELFQRLITDGTDCGDVVLDCFMGSGACGVACVRLEREFIGFEINEEYFNGA 210
Query: 262 TKRIA 266
K I
Sbjct: 211 KKAIN 215
>gi|156742487|ref|YP_001432616.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156233815|gb|ABU58598.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 464
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 100/265 (37%), Gaps = 44/265 (16%)
Query: 40 VDLIFADPPYNLQLNGQLY---------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
++LI+ DPP+ ++ R + D+WD +AY F L+
Sbjct: 80 INLIYIDPPFGSGIDRARRVRLRGPGPARLIPAAEVEYCDTWDD----DAYLQFMYERLI 135
Query: 91 ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
A R +L +G +++ + + ++ + P R+F H+
Sbjct: 136 ALRDLLADDGCIYLHCDFRKAHHLRCLMDEVFGAERMLNEIIWFYPRGGDGERQFNRKHD 195
Query: 151 TLIWASPSPKA--------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
T++ + + YT A ++ + + ER++ +
Sbjct: 196 TILLYARGDRWTFNYDAVLIPYTRRQIARFRQEDER---GRYYWNVNPRGERVKTYLRKP 252
Query: 203 L--------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+PT KP ALL RI+ +S++PGD++LD F GSGT+ A+
Sbjct: 253 GIGAYDVWTIPIDAALVRDLGYPTAKPLALLERIIRASSRPGDLVLDCFAGSGTTAVAAQ 312
Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
L R +I + I + +R+
Sbjct: 313 HLERRWIACDANPGAIQVTARRLRQ 337
>gi|162147849|ref|YP_001602310.1| modification methylase MjaV [Gluconacetobacter diazotrophicus PAl
5]
gi|209542469|ref|YP_002274698.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786426|emb|CAP56008.1| putative modification methylase MjaV [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530146|gb|ACI50083.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 271
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 54/271 (19%), Positives = 102/271 (37%), Gaps = 37/271 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++G+ + VL ++ A SVD++ PPYN+ L + Y S
Sbjct: 17 HQLVRGDCLRVLRRMDADSVDVVVTSPPYNIGLGYRTYSDRMSETQ-------------- 62
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGS---------------YHNIFRIGTMLQNLNFWI 125
Y + A RV++P+G+ ++ + IF + + +
Sbjct: 63 YLDWMMAVARELHRVMRPDGSFFLNIAGSSAQPWIPFELAVRLREIFHLQNHISWIKSVS 122
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+N+ + P+ R HE L + S + + ++ R
Sbjct: 123 VNEDTFGHFKPV--NSARYLHRNHEHLFHLTRSGTVELNRLDIGVPYKDKSNIARRGHEQ 180
Query: 186 IPICSGS------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
C G E ++ K + HP P L + +PG ++LDPF G+GT+
Sbjct: 181 DRRCRGDTWFIPYETVQGKAQKFNHPGTFPVQLPRMCIRLHGRPGAVVLDPFMGTGTTLV 240
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
A++ IGI++ Y+ +A R+
Sbjct: 241 AAQEEGARAIGIDLDTAYVTVARDRLTQAMK 271
>gi|238029038|ref|YP_002913263.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
gi|237880615|gb|ACR32943.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
Length = 217
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 92/243 (37%), Gaps = 41/243 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + L KL +SVD + DPPY L R S+ + VTD W
Sbjct: 3 LLYHGDCLVALPKLAPESVDCVVTDPPY---LVNFRDRSGRSMANDVTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + + R + F + IV+ K+
Sbjct: 51 ---LDPAFAEIYRVLKRDTVCVSFYGWGKVDRFFQAWKRAGFRVCGHIVFTKTYGS---- 103
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
K+ + ++A + I G
Sbjct: 104 ------------------KSGMVKYQHEAAYVLGKGRPDAPANPIADVQPF----PYTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP A L ++ + TKPGD +LDPF GSG++ A++L R +IGIE+ + Y A
Sbjct: 142 RHHPTEKPVAALRTLIAAFTKPGDTVLDPFAGSGSTCVAARELGRRYIGIELDETYFAAA 201
Query: 262 TKR 264
R
Sbjct: 202 KAR 204
>gi|163839947|ref|YP_001624352.1| adenine specific DNA methylase [Renibacterium salmoninarum ATCC
33209]
gi|162953423|gb|ABY22938.1| adenine specific DNA methylase [Renibacterium salmoninarum ATCC
33209]
Length = 285
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 24/271 (8%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ----------------LYRPDHSL 64
+ +++ + S L LP + LI+ DPP+N + ++
Sbjct: 12 NLVVEAENSSYLSTLPDGAFSLIYLDPPFNTGRTQKRQSTTMVRSQSGSRLGFCGQNYET 71
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
V +D +F Y AF L+ R+L +GTL++ Y + ML +
Sbjct: 72 VKGALHHYD--DAFTDYWAFLEPRLVEAWRLLSEDGTLYLHLDYREVHYAKVMLDAIFGR 129
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANEDV 178
+ +R+ H+ ++ +P + Y A
Sbjct: 130 ESFLNEIIWAYDFGARANKRWPTKHDNILVYVKNPNKYHFDNAAVDREPYMAPGLVTAAK 189
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + + +PTQKP LL R++ +S++PGD +LD F GSGT G
Sbjct: 190 VALGKLPTDVWWHTIVSPTGKEKTGYPTQKPVGLLRRVVAASSRPGDWVLDFFAGSGTIG 249
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
AV+ L R F+ ++ I+I T+R+++V
Sbjct: 250 AVSVALDRRFVCVDQNPAAIEIMTQRLSNVA 280
>gi|317179830|dbj|BAJ57616.1| Type IIS restriction enzyme M1 protein [Helicobacter pylori F32]
Length = 260
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 71/264 (26%), Positives = 109/264 (41%), Gaps = 40/264 (15%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+KL KSVDL DPPYNL++ SWD F +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKND 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E + F+ AW+ LK G+ ++ + N L + LN I W K +
Sbjct: 46 EEFLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFA 105
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT-----------------------FNYDALKAAN 175
N + R A E++++ S K + N
Sbjct: 106 NAKKRY-NPAQESILFYSMHKKNYTFNADEVRIAYESTERIKHAQSKGILKNNKRWFPNP 164
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ W I E+ + K + HP+ KP+AL+ R++ +S+ D+ILD F GSG
Sbjct: 165 KGKLCLDVWEIASQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224
Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
+ VAK L R+FIG E +Y+
Sbjct: 225 MTSLVAKSLGRNFIGCESHAEYVH 248
>gi|306818317|ref|ZP_07452046.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
35239]
gi|304648962|gb|EFM46258.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
35239]
Length = 354
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 68/309 (22%), Positives = 110/309 (35%), Gaps = 62/309 (20%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-------------------------- 53
++ +I G+++ VL L ++ LI+ DPP+N
Sbjct: 33 ENTVIHGDNLPVLRGLADETFQLIYIDPPFNTGKVQSRVTMRTRQVREPGAAGGAEGADS 92
Query: 54 NGQLYRPDHSLVDAVTDSWD----------------KFSSFE-------AYD-AFTRAW- 88
+G + D K S+E +YD F W
Sbjct: 93 DGSPEPGGSPASRGASRKSDAAPSTAGSNSGSRVGFKGQSYETIRGQVTSYDDEFADYWG 152
Query: 89 -----LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
L RVLKP+GT ++ Y + +L L + R
Sbjct: 153 FLAPRLEEAWRVLKPSGTFYLHLDYREVHYAKVLLDALFGRECFLNEIIWAYDYGARTKR 212
Query: 144 RFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
R+ H+ ++ PK + Y A + R + +
Sbjct: 213 RWPAKHDNILVYVKDPKQYYFDSESVDREPYMAPGLVTAEKAARGKLPTDVWWHTIVSPT 272
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ + TQKPE +L RI+ +S++PGD +LD F GSGT+GAVA K+ R F+ ++
Sbjct: 273 GKEKTGYATQKPEGILRRIVAASSRPGDWVLDFFAGSGTTGAVAGKMGRHFVLVDENPQA 332
Query: 258 IDIATKRIA 266
I + R A
Sbjct: 333 IAVMRARFA 341
>gi|294084850|ref|YP_003551610.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292664425|gb|ADE39526.1| DNA methylase N-4/N-6 domain protein [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 754
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 77/441 (17%), Positives = 140/441 (31%), Gaps = 110/441 (24%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNLQLNGQL-------- 57
+ W +K+I G++ +L L + LI+ DPP+++ + +
Sbjct: 84 LKGWTNKLIWGDNKFILSSLKNGPLREEIEANGGIKLIYIDPPFDVGADFTMGVEIGEEI 143
Query: 58 --YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ A D+W K ++ + L+ + +L P+G ++V Y +
Sbjct: 144 FEKESNVLEEIAYRDTWGKGQD--SFISMLYERLILLKDLLAPDGAIYVHCDYRVSAYVR 201
Query: 116 TML-QNLNFWILNDIVWRKSNPMPNFRGRR----------FQNAHETLIWASPSPKAKGY 164
+L + + + K N R ++A + + + Y
Sbjct: 202 LILSEIFGEGSFRNQIIWKRTSAHNDPARYGIIDDHIYFFSKSATDWIWTDHRTEYQDWY 261
Query: 165 TFNY------------------------DALKAANEDVQMRSDWLIPIC----------- 189
Y DA + +
Sbjct: 262 VERYYRYQDEKTGKRFLSRDVTAPSHGSDAGVYEWKGKYPPKGRMWAYTKDKMKQMDEAE 321
Query: 190 ------SGSERLRNK-----------------------DGEKLHPTQKPEALLSRILVSS 220
+G RL+ D +PTQKPEAL+ RI+ +S
Sbjct: 322 RLFYTSNGIPRLKQYLDEMDGASIQTIWDDILPIVSWSDERSGYPTQKPEALVDRIIQAS 381
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
T DI+ D F GSGT+ AVA+KL R +I ++ + I A KR+ VQ
Sbjct: 382 TNEDDIVCDFFIGSGTTAAVAEKLGRKWICSDLGKFSIHTARKRLIGVQ---RELKKEGK 438
Query: 281 GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSG 340
R + ER G L+ V + + + +
Sbjct: 439 NYRAFEVLNLGKY-EREFFVSG--LSELDEKAEQQVE-------NNRELAFNSLILQAYQ 488
Query: 341 SETCNGWNFWYFEKLGELHSI 361
+E +G+ + +K + +I
Sbjct: 489 AEPVSGFRTFRGKKNNRVIAI 509
>gi|238023453|ref|YP_002907686.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
gi|237880506|gb|ACR32835.1| DNA methylase N-4/N-6 domain protein [Burkholderia glumae BGR1]
Length = 217
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 41/249 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ + L +L +SVD + DPPY L R S+ + VTD W
Sbjct: 3 LLFRGDCLVALPQLARESVDCVITDPPY---LVNFRDRSGRSIANDVTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + ++ + R + F + +++ K+
Sbjct: 51 ---LDPAFAEIYRVLKRDTVCVSFYGWNKVDRFFQAWKRAGFRVCGHLIFTKTYGS---- 103
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
K+ + ++A + I G
Sbjct: 104 ------------------KSGMVKYQHEAAYVLGKGRPEAPANPIADVQPF----PYTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP A L ++ + TKPGD +LDPF GSG++ A++L R +IGIE+ + Y A
Sbjct: 142 RHHPTEKPVAALRTLIAAFTKPGDTVLDPFAGSGSTCVAARELGRRYIGIELDETYFAAA 201
Query: 262 TKRIASVQP 270
R+++ P
Sbjct: 202 KARLSAPLP 210
>gi|220931356|ref|YP_002508264.1| DNA methylase N-4/N-6 domain protein [Halothermothrix orenii H 168]
gi|219992666|gb|ACL69269.1| DNA methylase N-4/N-6 domain protein [Halothermothrix orenii H 168]
Length = 386
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 62/263 (23%), Positives = 105/263 (39%), Gaps = 22/263 (8%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
NQ ++ +KII G+S +L+++P S+DLI PPYN L+ + R
Sbjct: 137 NQPLPEKYINKIICGDSEQILKEIPDNSIDLILTSPPYNFGLDYKDSR------------ 184
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNLNFWIL 126
+++Y + + C R+LK G + + Y + + N I
Sbjct: 185 --DGYYWKSYFSKLFSIFKECIRILKYGGRIIINVQPLFSDYIPTHHLISNFFIKNKMIW 242
Query: 127 NDIVWRKSN---PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ + N G + L + + N D+
Sbjct: 243 KGEILWEKNNYNCKYTAWGSWKSPSSPYLKYTWEFLEIFAKGSLKKKGDKKNIDITGEEF 302
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
S + HP PE L+ R+L + GD+ILDPF G+GT+ AVA +
Sbjct: 303 KEWVSARWSIAPVRNMKKYQHPAVFPEELVYRVLKLFSYKGDVILDPFNGTGTTTAVAHR 362
Query: 244 LRRSFIGIEMKQDYIDIATKRIA 266
L+R+++GI++ DY + A R+
Sbjct: 363 LKRNYLGIDISPDYCNTARGRLN 385
>gi|119385886|ref|YP_916941.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119376481|gb|ABL71245.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
PD1222]
Length = 225
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 63/256 (24%), Positives = 99/256 (38%), Gaps = 41/256 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ +I + I ++ + SVD I DPPY V D + + +
Sbjct: 9 RNLVINADCIEAMQAFGSGSVDFILTDPPY---------------VTRFRDRQGRTVAND 53
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ R RVLK G ++ + + F I+ +V+RK
Sbjct: 54 DNARWLRPAFAQMHRVLKDGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRYAS-- 111
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
R + HE + D L
Sbjct: 112 -SARFLRYEHEQAYLLAKGDPESPARPVPDVLDF-----------------------PYT 147
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G KLHPTQKP A L R++ + TKPGD++LDPF GSG++ A A L R ++G+E+ ++
Sbjct: 148 GNKLHPTQKPVAALRRLIGAFTKPGDLVLDPFSGSGSTLAAAHLLGRDWLGVELDVEHYQ 207
Query: 260 IATKRIASVQPLGNIE 275
A KR+A++Q
Sbjct: 208 TAGKRMAALQERDRKA 223
>gi|295837375|ref|ZP_06824308.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. SPB74]
gi|197696113|gb|EDY43046.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. SPB74]
Length = 248
Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 52/268 (19%), Positives = 94/268 (35%), Gaps = 33/268 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTDS---W 72
+ +G+++++L+ LP +SV + DPPYN G+ R + ++ D
Sbjct: 4 TLHRGDALTILKTLPDESVHAVITDPPYNSGGRTSSERTGRTARAKYVTSNSAHDLATFP 63
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ +Y ++ L R + V + LQ + I W
Sbjct: 64 GENRDQRSYRSWLTELLTEAYRAATEHSVAMVFSDWRQEPTTTDALQMAGWTWSGTISWI 123
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K P G D + G
Sbjct: 124 KPASRPRKGG-----------------------PKQDTEFVTWGVKGTLDNTRDLYLPGH 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+++H TQKP ++ +++ G +LDPF GSG++G A + R+F+G+E
Sbjct: 161 YIASQPRKDRVHITQKPVEIMRQLVK-VCPEGGTVLDPFTGSGSTGVAALREGRNFLGVE 219
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
+ Y DIA +R+ + + L
Sbjct: 220 LSTHYADIAERRLRAELTQDDFVLAGPE 247
>gi|320159413|ref|YP_004172637.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
thermophila UNI-1]
gi|319993266|dbj|BAJ62037.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
thermophila UNI-1]
Length = 291
Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 62/300 (20%), Positives = 110/300 (36%), Gaps = 51/300 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ G+ L+++P +DLIF PPY + + Y
Sbjct: 6 RLMLGDCREKLKEIPDNFIDLIFTSPPYADSRSNTYG----------------GIKPDEY 49
Query: 82 DAFTRAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTMLQNLNFWILN--DIVWRK 133
+ RVLKP GT V+ + + I +L+ L + +W K
Sbjct: 50 VEWFLPISKELLRVLKPTGTFILNIKEKVVNGERHTYVIELILEMRKQGWLWTEEFIWHK 109
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P RF++A E L+ + Y + D ++++ + +
Sbjct: 110 KNSYPGKWPNRFRDAWERLLQFNKQRHFHMYQEEVMIPMGSWADKRLKNLSHTDLVRDNS 169
Query: 194 RLRNKDGEKL-------------------------HPTQKPEALLSRILVSSTKPGDIIL 228
R+ + G+++ H PE L + T+ GD +L
Sbjct: 170 RVGSGFGKRVANWIGRNKVYPTNVLHLATETKNRNHSAVFPEDLPEWFIKLFTREGDWVL 229
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA--SVQPLGNIELTVLTGKRTEP 286
DPF GSGT+ VA+++ R+ IGIE+ +Y ++ + I P + L P
Sbjct: 230 DPFMGSGTTNRVAQRMGRNSIGIEILPEYFALSQQSIQPVLEVPEQLMLLEEKEPYDAHP 289
>gi|219849215|ref|YP_002463648.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aggregans DSM 9485]
gi|219543474|gb|ACL25212.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
9485]
Length = 276
Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 69/283 (24%), Positives = 111/283 (39%), Gaps = 49/283 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ VL+ LP+ SVDLIF PPY + + EAY
Sbjct: 8 QLFLGDCRDVLKTLPSDSVDLIFTSPPYADRRKHTYG----------------GIAPEAY 51
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-------IGSYHN-IFRIGTMLQNLNFWILNDIVWRK 133
+ RVLKP+GT + G H + + L+ + + +W K
Sbjct: 52 VEWFLPIGQELLRVLKPDGTFILNIKEKAEHGERHTYVIELILALRQQGWLWTEEFIWHK 111
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P RF++A E LI + + K + D +++ + +
Sbjct: 112 KNCYPGKWPNRFRDAWERLIQFNKTKHFKMFQEAVMVPMGDWADKRLKHLSQTDLIRDNS 171
Query: 194 RLRNKDGEKL-------------------------HPTQKPEALLSRILVSSTKPGDIIL 228
R+ + G+++ H PEAL + T+ GD +L
Sbjct: 172 RVGSGFGKRVANWVSRDNVYPTNVLHLATETKNRRHSAVFPEALPEWFIKLFTQEGDTVL 231
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
DPF GSGT+ VA+++ R IGIE+ +Y +A + IA P
Sbjct: 232 DPFMGSGTAIKVARRMNRRGIGIEILPEYFALAEEEIAKEAPR 274
>gi|313143165|ref|ZP_07805358.1| type IIS restriction enzyme M1 protein [Helicobacter cinaedi CCUG
18818]
gi|313128196|gb|EFR45813.1| type IIS restriction enzyme M1 protein [Helicobacter cinaedi CCUG
18818]
Length = 261
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 43/264 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + S LE L S+DL DPPYNL++ SWD F S +
Sbjct: 9 LNKIYIQDCFSFLESLADSSIDLAIIDPPYNLKIA----------------SWDSFKSEK 52
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ AF+ W+ +K NG+ ++ + YH + + + F + +
Sbjct: 53 EFLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEKAVF---QNFITWYKKDGL 109
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTF-----------------------NYDALKAAN 175
++ +RF N E++++ + K+ + N
Sbjct: 110 SYTKKRFVNNQESILFYTMDSKSYCFNPESIRVPYESTSRIEHAKKNGILKNGKRWYPNE 169
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
W I +++ K + HPT KP+ ++ R++ +S+K GD++LD F GSG
Sbjct: 170 NGKLCPDVWEIASQRHKQKVNGKTQKLHHPTIKPKEMIERMIKASSKKGDLVLDLFSGSG 229
Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
+ VA+ L R+FIG E +Y+D
Sbjct: 230 MTSLVARDLERNFIGCEASIEYVD 253
>gi|134296760|ref|YP_001120495.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139917|gb|ABO55660.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
G4]
Length = 433
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/301 (18%), Positives = 115/301 (38%), Gaps = 30/301 (9%)
Query: 4 KNSLAINENQNSIFEW------KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
KN+ N + NS+ + + ++I + ++ ++ LP S+DL+ DPPY + +
Sbjct: 2 KNTNKSNTSSNSVKNYNLKIKGEGQLINNDCLAGMKNLPDNSIDLVLTDPPYGIADKNRT 61
Query: 58 YRPDHSLVDAV-------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ + D D F + + + + ++ RV K G++ +
Sbjct: 62 TFVNSKGGKPITTQEAWGNDFQDNFCDVDGFWEWFKPFMSEMARVTKDGGSIILFLDAKY 121
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+++ + ++ + + ++ E IW + Y A
Sbjct: 122 QGHFVYLIEKEFGLKWRNNIFFTKTNARTLNMKGYAHSCEQAIWFTKGKTPFTYNNPMQA 181
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
L+ N +V S GS+ + HP +K + ++ ++ +K G +ILDP
Sbjct: 182 LRKNNPNVFTGSV-------GSKETK-------HPCEKYKWMIEPLIERHSKKGQLILDP 227
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
F GS ++ K R I E + + ++A +RI L K+ E +
Sbjct: 228 FGGSASTLVYGIKQGRKVIAFENSEKFFEMAKERIMKHN---LDVLFFEPNKKIERKQDI 284
Query: 291 N 291
N
Sbjct: 285 N 285
>gi|21232398|ref|NP_638315.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21114176|gb|AAM42239.1| site-specific DNA-methyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 234
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/259 (24%), Positives = 101/259 (38%), Gaps = 38/259 (14%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDA 67
K+++++G+++++L L A S D + DPPY D
Sbjct: 2 KNQLLQGDALTILPTLEANSFDALITDPPYASGGLHAAARAKPPSQKYVQGGGAQLHADF 61
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
V D D+ ++ + WL C RVLK + + + + LQ F
Sbjct: 62 VGDERDQ----RSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRG 117
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
VW K+ + GR A E ++W S M D P
Sbjct: 118 ITVWDKTEGVRPQLGRFRNQA-EYIVWGSKG--------------------NMPLDRRAP 156
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ G R + +K H T KP L+ +++ + G ILDPF GSGT+ A+
Sbjct: 157 VLPGVIRESVRKADKHHLTGKPTELMRQLVRIC-EAGGRILDPFAGSGTTLVAAELEGYG 215
Query: 248 FIGIEMKQDYIDIATKRIA 266
+ G+E+ Y D+A R+A
Sbjct: 216 WTGVELTSHYSDVARTRLA 234
>gi|190572398|ref|YP_001970243.1| putative site-specific DNA-methyltransferase [Stenotrophomonas
maltophilia K279a]
gi|190010320|emb|CAQ43928.1| putative site-specific DNA-methyltransferase [Stenotrophomonas
maltophilia K279a]
Length = 236
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 38/257 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV------------ 68
+++I+G+++++L LPA S D + DPPY R +
Sbjct: 3 NELIQGDALTILPTLPANSFDALITDPPYASGGTHASARQRGPNEKYMQSGGPRLHADFP 62
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+D D+ ++ A+ WL C RVL+ + + + + LQ F
Sbjct: 63 SDERDQ----RSHLAWMHLWLAQCNRVLRDGAPVLLFTDWRQLPLTTDALQCAGFTWRGV 118
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
VW K+ + RGR F N E ++W S M P
Sbjct: 119 AVWDKTGGVRPQRGR-FSNQAEYVVWGSKG--------------------GMPLGRAAPT 157
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
G R + +K H T KP L+ +++ + G ILDPF GSGT+ A+ S+
Sbjct: 158 LPGVFREAVRKADKHHLTGKPTDLMRQLVRIC-EQGGRILDPFAGSGTTLVAAEAEGYSW 216
Query: 249 IGIEMKQDYIDIATKRI 265
GIEM Y D+A R+
Sbjct: 217 TGIEMTGHYFDVAKSRL 233
>gi|224436664|ref|ZP_03657673.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter cinaedi
CCUG 18818]
Length = 254
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 43/264 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + S LE L S+DL DPPYNL++ SWD F S +
Sbjct: 2 LNKIYIQDCFSFLESLADSSIDLAIIDPPYNLKIA----------------SWDSFKSEK 45
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ AF+ W+ +K NG+ ++ + YH + + + F + +
Sbjct: 46 EFLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEKAVF---QNFITWYKKDGL 102
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTF-----------------------NYDALKAAN 175
++ +RF N E++++ + K+ + N
Sbjct: 103 SYTKKRFVNNQESILFYTMDSKSYCFNPESIRVPYESTSRIEHAKKNGILKNGKRWYPNE 162
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
W I +++ K + HPT KP+ ++ R++ +S+K GD++LD F GSG
Sbjct: 163 NGKLCPDVWEIASQRHKQKVNGKTQKLHHPTIKPKEMIERMIKASSKKGDLVLDLFSGSG 222
Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
+ VA+ L R+FIG E +Y+D
Sbjct: 223 MTSLVARDLERNFIGCEASIEYVD 246
>gi|257088375|ref|ZP_05582736.1| DNA-methyltransferase [Enterococcus faecalis D6]
gi|256996405|gb|EEU83707.1| DNA-methyltransferase [Enterococcus faecalis D6]
gi|315026485|gb|EFT38417.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2137]
Length = 246
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 78/265 (29%), Positives = 121/265 (45%), Gaps = 41/265 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II + L ++ +SVDLIF DPPYNL+ + D ++DSW S + Y
Sbjct: 3 RIINKDVFKGLNEVKEESVDLIFIDPPYNLKKSY---------ADGISDSW---ISDKEY 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ WL LKPNG+L+++ + N+ I L++ + + +
Sbjct: 51 MDWVEKWLEITISKLKPNGSLYIMNTTQNMPFIDIYLRDKLYIQSR--IVWHYDSSGVQA 108
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA--------------------LKAANEDVQMR 181
R + + +E +++ + K GYTFN A + NE
Sbjct: 109 KRYYGSLYEPILFCTK--KRSGYTFNGSAIEVKTRTGSERKLIDYRKNPPQQYNETKVPG 166
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ W P R + K+ K HP+QKP +LL RI+++S+ GD ILD F GS G V
Sbjct: 167 NVWYFPRV----RFKMKEYVK-HPSQKPISLLKRIVLASSNEGDTILDVFAGSFALGEVC 221
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
K R +IGIEM + Y +I R+
Sbjct: 222 KNYSRDYIGIEMSKTYCEIGKNRLN 246
>gi|13542295|ref|NP_111983.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
gi|14325729|dbj|BAB60632.1| modification methylase [Thermoplasma volcanium GSS1]
Length = 616
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/352 (20%), Positives = 126/352 (35%), Gaps = 70/352 (19%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
S +LA + EWK+K+I G++ V+ L + + +I+ADPP+ N +
Sbjct: 33 SNIGTLAQFRKEPENSEWKNKLIWGDNKYVMASLLPEFRGKIKMIYADPPFFTGTNMNIT 92
Query: 59 ----------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
P A + W + S +Y + + + +L +G++WV Y
Sbjct: 93 LEVGDEEAVKEPSAIEEIAYRNMWKEGPS--SYLQYMYDRFVLMKDLLSEDGSIWVRSDY 150
Query: 109 HNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
H I +L + + + + +R+ A ++L + S +
Sbjct: 151 HYSHYIKGILDEIFGYENFRNEIIINRIKKSDSGAKRYNTATDSLFFYSKTDNYFFKNVK 210
Query: 168 YDALKAANE-----------------DVQMRSDWLIPICSGSE-----------RLRNKD 199
NE M G E RL K
Sbjct: 211 KKLEITKNERWHSMDSQGQGGPRTIFGKTMYPPSGRHWTFGQENIDRMIAEGRIRLNPKT 270
Query: 200 GE--------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
G+ +PT+ E LL RI++S+T+ GD+I D F G
Sbjct: 271 GKPEYKLEETEEQILDSNWTDIPGYSFSTGYPTENAEQLLERIILSATEKGDLIADFFSG 330
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
SGT+ AVA+KL R +IG ++ + + KR+ + E+ L +
Sbjct: 331 SGTTVAVAEKLGRRWIGADIGRFSVHTIRKRLLDIPHCKPFEVLNLGKYERK 382
>gi|325921368|ref|ZP_08183225.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
gi|325548126|gb|EGD19123.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
Length = 240
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 38/265 (14%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDA 67
K+++++G+++++L L A S D + DPPY D
Sbjct: 2 KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARAKPPSQKYVQGGGAQLHADF 61
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
V D D+ ++ + WL C RVLK + + + + LQ F
Sbjct: 62 VGDERDQ----RSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLPLTTDALQIAGFTWRG 117
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
VW K+ + GR A E ++W S M D P
Sbjct: 118 ITVWDKTEGVRPQLGRFRNQA-EYIVWGSKG--------------------NMPLDRRAP 156
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ G R + +K H T KP L+ +++ + G +LDPF GSGT+ A
Sbjct: 157 VLPGVIRESVRKADKHHLTGKPTELMRQLVRIC-EAGGRVLDPFAGSGTTLVAAYLEGFE 215
Query: 248 FIGIEMKQDYIDIATKRIASVQPLG 272
+GIEM Y + R+ QPL
Sbjct: 216 SLGIEMIDQYAAVTRDRLEKTQPLE 240
>gi|237753191|ref|ZP_04583671.1| adenine specific DNA methyltransferase [Helicobacter winghamensis
ATCC BAA-430]
gi|229375458|gb|EEO25549.1| adenine specific DNA methyltransferase [Helicobacter winghamensis
ATCC BAA-430]
Length = 232
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/252 (27%), Positives = 112/252 (44%), Gaps = 23/252 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDL--IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ +S + ++++ V + I DPPYN+ + WDK
Sbjct: 2 KLYNADSYTFIQQMLENKVKVHHIITDPPYNISKSNNFPSMRQRRQGVDFGVWDKGFDL- 60
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+W+ +L NG++ + SY I I L+N N + + ++W+KSNPMP
Sbjct: 61 ------VSWIPQYAEILDKNGSMIIFCSYRFISFITQALENSNMIVKDVLIWQKSNPMPR 114
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
RR+ E +WA S + D +RS + + SG E+L
Sbjct: 115 NTTRRYVQDLEFAVWAVKSGAKWVFNKPSDVPY-------LRSIFTHALVSGKEKL---- 163
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQK L+ ++ T +++LDPF GSG++GA +L R FIGIE + +
Sbjct: 164 ---GHPTQKSLKLMKDLIQIHTNLNEVVLDPFMGSGSTGAACLELGREFIGIERDKKFFT 220
Query: 260 IATKRIASVQPL 271
+A KR+ S
Sbjct: 221 MAQKRLESYNKD 232
>gi|189346183|ref|YP_001942712.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
gi|189340330|gb|ACD89733.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
Length = 368
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/280 (23%), Positives = 110/280 (39%), Gaps = 56/280 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I G++ ++ LP + + PPY + V + + Y
Sbjct: 95 QVINGDTRDSIKSLPDNTFRCVVTSPPYWGVRDY-----------GVENQIGAEPDLKDY 143
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-----------------------IGSYHNI------- 111
RRVLK +GT W+ SY
Sbjct: 144 VNALVEIFSEVRRVLKSDGTFWLNIGNTYTSGGRKWRQEDSKNKGRAMSYRPPTPDGLKK 203
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ + Q +++ NDI+W K N P R +HE L S ++ Y
Sbjct: 204 KDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVSHEYLFMFSK---SEQY 260
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
FN +A+K + + + +E + H P+ L+ +++ ++
Sbjct: 261 YFNQEAIKESYTNGNGFKNKRTVWSINTE-----PCAEAHFAVFPKNLVRPCILAGSEEN 315
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
D+ILDPF+GSGT G V+ +L R +GIE+ QDY+DIA+KR
Sbjct: 316 DLILDPFYGSGTVGIVSMELNRKCVGIEINQDYVDIASKR 355
>gi|18202058|sp|O52692|MTS1_STRCS RecName: Full=Modification methylase ScaI; Short=M.ScaI; AltName:
Full=N-4 cytosine-specific methyltransferase ScaI
gi|2865584|gb|AAC97178.1| ScaI methyltransferase [Streptomyces caespitosus]
Length = 304
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 101/269 (37%), Gaps = 41/269 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+S+ +L+ +P + DL PPYN+ + S E Y
Sbjct: 52 LLYHGDSLELLKSMPQQIFDLTVTSPPYNIGKEYEGVL-----------------SIEEY 94
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
++ W+ R G W+ Y + G + + + N+
Sbjct: 95 ISWCETWMSRVHRATSAGGAFWLNVGYVPVPNQGKAVPIPYLLWDKSPFYMIQEVVWNYG 154
Query: 141 ----RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE----------------DVQM 180
+ F +E +W Y F+ D+++ N
Sbjct: 155 AGVASRKSFSPRNEKFLWYVR--DPLNYYFDLDSVRDPNVKYPNQKKNGKLKCNPLGKNP 212
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
W P + + R+ HP Q P A++ R++ + + +ILDPF GSGT+
Sbjct: 213 TDVWQFPKVTSGAK-RSSVERTAHPAQFPSAVIERVIKACSPSDGVILDPFLGSGTTSLT 271
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
A+K R +GIE+++DY+DIA R+ +
Sbjct: 272 ARKQGRCSVGIEIREDYLDIAVGRLEAEA 300
>gi|221215280|ref|ZP_03588245.1| DNA methylase [Burkholderia multivorans CGD1]
gi|221164712|gb|EED97193.1| DNA methylase [Burkholderia multivorans CGD1]
Length = 214
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 91/244 (37%), Gaps = 41/244 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ + VL +P VD + DPPY L R S+ + V W
Sbjct: 4 LYNGDCLEVLPTIPDSVVDFVLTDPPY---LVNYHDRSGRSIANDVKSDW---------- 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
RV+KPN + + I+ IV+ KS +
Sbjct: 51 --LAPAFAEVYRVMKPNTLCVSFYGWTKTDLFFDAWKRAGLRIVGHIVFAKSYAS---KS 105
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R HE+ + A T D ++ G +
Sbjct: 106 RFVAYRHESAYVLAKGQPAVPDTALPDVMRW-----------------------EYSGNR 142
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPTQKP L R++ + T GD++LDPF GSG++ A++L R +IGIE+ Y A
Sbjct: 143 HHPTQKPVPCLKRLIETYTAAGDVVLDPFAGSGSTCVAARELGRYYIGIELDPTYYTAAC 202
Query: 263 KRIA 266
+R+
Sbjct: 203 ERLE 206
>gi|225849772|ref|YP_002730006.1| DNA methylase [Persephonella marina EX-H1]
gi|225644906|gb|ACO03092.1| DNA methylase [Persephonella marina EX-H1]
Length = 294
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/283 (24%), Positives = 113/283 (39%), Gaps = 33/283 (11%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E+ DK+I G+++ L+K+P S+DL PPYN + + + + D TD+
Sbjct: 2 VSEFIDKVICGDTLETLKKIPDNSIDLGITSPPYNKREDKKGWLVDKITYKGATDN---- 57
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL------NDI 129
E Y L R++KP G+ + H I ++ + W+
Sbjct: 58 LPEEVYQETQIKVLNELYRIIKPGGSFFYN---HKIRWEKGIMFHPMDWLRKTKWIIRQE 114
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ N RG RF E + W + A +
Sbjct: 115 IIWDRMIAANLRGWRFWQVEERIYWLYKPIGNNKIGKELKSRHALLTSIW---------- 164
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLRRS 247
RL ++ HP P AL RI+ S G +++DP+ GSGT+ AK L
Sbjct: 165 ----RLLPENNN-PHPAPFPIALPVRIIYSIFDEERGKLVIDPYCGSGTTLVAAKILGHH 219
Query: 248 FIGIEMKQDYIDIATKRIASVQ---PLGNIELTVLTGKRTEPR 287
++GI++ Q+Y D A KR+ + Q P E++ K+T
Sbjct: 220 YLGIDISQEYTDYALKRLENYQFEIPKAQEEISKHVVKKTFKE 262
>gi|188577617|ref|YP_001914546.1| DNA methylase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522069|gb|ACD60014.1| DNA methylase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 236
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/259 (25%), Positives = 101/259 (38%), Gaps = 38/259 (14%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------------LNGQLYRPDHSLVDA 67
K+++++G+++++L L A D + DPPY D
Sbjct: 2 KNQLLQGDALTILPTLEANLFDALITDPPYASGGLTAAARAKPPSQKYVQGGGAQLHADF 61
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
V D D+ + A+ WL C R+LK + + + + LQ F
Sbjct: 62 VGDERDQ----RGHLAWMHLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFTWRG 117
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
VW K+ + GR A E ++W S M D P
Sbjct: 118 VAVWDKTEGVRPQLGRFRNQA-EYIVWGSKGG--------------------MPLDRRAP 156
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ G R +K H T KP L+ R++ + G ILDPF GSGT+ A+
Sbjct: 157 VLPGVVRTPVLKADKHHLTGKPTELMRRLVRIC-EAGGRILDPFAGSGTTLVAAELEGYR 215
Query: 248 FIGIEMKQDYIDIATKRIA 266
+ G+EM Q Y +IA +R+A
Sbjct: 216 WTGVEMTQHYAEIARERLA 234
>gi|226944536|ref|YP_002799609.1| adinene-specific DNA-methyltransferase [Azotobacter vinelandii DJ]
gi|226719463|gb|ACO78634.1| adinene-specific DNA-methyltransferase [Azotobacter vinelandii DJ]
Length = 677
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 80/429 (18%), Positives = 148/429 (34%), Gaps = 91/429 (21%)
Query: 19 WKDKIIKGNSI------------SVLEKLPAKSVDLIFADPPYNLQLNGQLY-------- 58
W++++I G+++ S + L +DLI+ DPP++ + + +
Sbjct: 88 WRNRLIYGDNLLAMAALLAGDPPSGMPAL-RGGIDLIYIDPPFDSRADYRTRVSLPGVEL 146
Query: 59 --RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
RP A D+W +Y L+ R +L +G++ + +
Sbjct: 147 EQRPTVLEQFAYCDTW--SDGTASYLEMLVPRLILMRELLSKSGSICIHIGMQVSHYVKA 204
Query: 117 MLQNLNFWILNDIVWRKSNPMPNF---RGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+ + + S P+ G + AHE L+W + + + Y
Sbjct: 205 VADEIFGKANFNTEIVWSYGTPSGGRAAGNKMVKAHEYLLWYAKNYGEHFHRKEYLPYSE 264
Query: 174 AN-EDVQMRSDWLIPICSGSER---------------------------------LRNKD 199
ED D ER ++ K+
Sbjct: 265 KYIEDRFTEVDGHGRRYRTREREKGCFERQYLDESKGVPLSTVWTDVKQLYAHHYIKRKN 324
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
E + TQKPEALL R++ S+ ++ D F GSGT+ AVA++L R +I ++ +
Sbjct: 325 EETGYDTQKPEALLERVINSACPENGLVADFFGGSGTTAAVAERLGRRWITSDLGKPACM 384
Query: 260 IATKRI--ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT--------NAQ 309
I KR+ + +P + + + + + + L Q L +
Sbjct: 385 IMRKRLIDRNARPFLYQAIGDYQLESAKNTLGRSFRIGD-LAQILLSLFGARPLPEEDNP 443
Query: 310 GNISATVCADG--TLISGTELGSIHRVGAKVSGSETCN-------GWNF-----WYFEKL 355
+V A G TL+ S +++ + + GW+ W FE
Sbjct: 444 ARNLGSVVAGGVRTLVYAD---SPNKLTGAATLKKALAQRDSLLGGWDRVVVLGWNFEPN 500
Query: 356 GELHSINTL 364
SI+ L
Sbjct: 501 IGE-SIDGL 508
>gi|257792343|ref|YP_003182949.1| DNA methylase N-4/N-6 domain-containing protein [Eggerthella lenta
DSM 2243]
gi|257476240|gb|ACV56560.1| DNA methylase N-4/N-6 domain protein [Eggerthella lenta DSM 2243]
Length = 265
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 32/254 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD----AVTDS----W 72
+ I ++++ L +L + S D + DPPY+ + R + V D +
Sbjct: 7 NTIRNVDALAGLRELESDSCDALLTDPPYSSGGMFRGDRAGKTSKKYQSTGVIDVKPEFY 66
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
++ + WL C RVLK V + I LQ F W
Sbjct: 67 GDNRDQLSFMHWCAMWLSECHRVLKQGSVAMVFTDWRQIAATVNALQMGGFIYRGVFSWI 126
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K P +GR NA + + M SD
Sbjct: 127 KPAARP-QKGRFTSNAEYCVWGSK---------------------GPMPSDGCCIKGY-F 163
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
E+ +++H TQKP LL +L T G +LDPF GSG++ A + RSFIG E
Sbjct: 164 EKSPEPTAKRIHSTQKPVELLEHLLKI-TPEGCTVLDPFMGSGSTAIAAIRTGRSFIGFE 222
Query: 253 MKQDYIDIATKRIA 266
M ++Y +A R++
Sbjct: 223 MSEEYCHLANGRVS 236
>gi|326783510|ref|YP_004323987.1| DNA adenine methylase [Synechococcus phage Syn19]
gi|310005013|gb|ADO99403.1| DNA adenine methylase [Synechococcus phage Syn19]
Length = 270
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/268 (22%), Positives = 91/268 (33%), Gaps = 37/268 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I + + +++L S+D I PPYNL + Y + + Y
Sbjct: 10 IYLKDCLEGMKELEDGSIDAIITSPPYNLNIKYGRYSDNKPR--------------QEYL 55
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIF-----------RIGTMLQNLNFWILNDIVW 131
++ +R+L +G L+V Y NI R +LQN W+ + V
Sbjct: 56 SWLVDIFREAKRILADDGHLFVNMGYSNIDPWIGMEVGLALREDWILQNHINWVKSIHVN 115
Query: 132 RKSNPM--PNFRGRRFQNAHETLIWASPSPK----------AKGYTFNYDALKAANEDVQ 179
K++ P R E L + Y E
Sbjct: 116 GKTSGHFKPINSKRFVCPTWEHLFHFTKDGNVEIDRLSVGVQYEYYEANIRGNNTAETKP 175
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
D E + +K+ HP P L L + K I LDPF G+GT+
Sbjct: 176 NLRDKGNCWFVPYETINSKELRGKHPATFPVKLAEDCLKLTGKDTGIALDPFMGTGTTAV 235
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
A+ L IG ++ +DYI A R+
Sbjct: 236 AAQILGWDCIGYDIDEDYIKFANNRLNQ 263
>gi|162146214|ref|YP_001600673.1| modification methylase [Gluconacetobacter diazotrophicus PAl 5]
gi|161784789|emb|CAP54331.1| putative modification methylase [Gluconacetobacter diazotrophicus
PAl 5]
Length = 226
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 41/260 (15%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+ N N+ ++++ I+ G+S+ ++ LP SVD I DPPY + G+ R + +A
Sbjct: 1 MTGNTNTATDFRNTILNGDSVQLMRALPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNAC 60
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ R RVLK G ++ I + F ++
Sbjct: 61 ---------------WLRPAFNQMHRVLKWGGFAVSFYGWNRIDLFADAWKAAGFRMVGH 105
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
IV+RKS R + HE+ + D L
Sbjct: 106 IVFRKSYS---SSSRFLRYEHESAYLLAKGNVMPPAKPIPDVLDM--------------- 147
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
G KLHPTQKP A L ++ + G ++LDPF GSG+S A+ L R +
Sbjct: 148 --------PYSGNKLHPTQKPVASLLPLVETFCPVGGLVLDPFAGSGSSLVAAQHLGRDW 199
Query: 249 IGIEMKQDYIDIATKRIASV 268
+G+E+ D+ AT+R+A
Sbjct: 200 LGMELDPDHAATATRRLAWH 219
>gi|300871833|ref|YP_003786706.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
pilosicoli 95/1000]
gi|300689534|gb|ADK32205.1| DNA methylase N-4/N-6 domain protein [Brachyspira pilosicoli
95/1000]
Length = 321
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/271 (23%), Positives = 105/271 (38%), Gaps = 32/271 (11%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ + +K I GN+ VL+K+ DL+ DPPYN+ N Y+
Sbjct: 37 KEYKKKDIINKTINGNTFDVLKKIEKNITDLMIVDPPYNISKNYHGYKF----------- 85
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
K +YD +T W+ + +LK N T++V + + IG +L+
Sbjct: 86 --KDRDNLSYDKYTHLWVESIIPILKENATIYVCCDWKSSLVIGNVLEKYFKIQNRITWQ 143
Query: 132 RKSNPMPNFRGRRFQNAHETLIWAS----------------PSPKAKGYTFNYDALKAAN 175
R+ ++N E + +A+
Sbjct: 144 REKGRG---AKNNWKNGMEDIWFATLSNKYTFNIDKVKIRRKVIAPYKIEGKPKDWIETE 200
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ S + HPTQKPE L+++++++S+ D + DPF GSG
Sbjct: 201 NGNFRDTCPSNFWDDISIPYWSMPENTAHPTQKPEKLIAKLILASSNENDFVFDPFLGSG 260
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
T+ VAKKL R++ GIE Y A KRI
Sbjct: 261 TTSVVAKKLGRNYSGIEQNPAYCAWAEKRIE 291
>gi|312620950|ref|YP_003927880.1| hypothetical protein pBS02_002 [Bacillus sp. BS-02]
gi|307543258|gb|ADN44272.1| hypothetical protein [Bacillus sp. BS-02]
Length = 571
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 48/291 (16%)
Query: 11 ENQNSIFEWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
++ I ++ + IIKGN++ L L + +I+ DPPYN + Y
Sbjct: 165 NGKHDIDDFTDQDNLIIKGNNLIALHSLKERYENKIKMIYIDPPYNTGNDSFKYN----- 219
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
DKF + + AF + L +L +G++++ + + + ++
Sbjct: 220 --------DKF-NHSTWLAFVKNRLEIAYSLLSQDGSIYIQIDNNEVHYLKVLMDEIFGE 270
Query: 124 WILNDIVWRKSNPMPNFRGRRFQ--NAHETLIWASP------------------------ 157
+ + ++ HET+++ S
Sbjct: 271 NNFQREIIWVLKGVSGYKSMINNFVRGHETILFYSKSSEFSFNKQYLPYSEAQLKRFTKK 330
Query: 158 SPKAKGYTFNYDAL-KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ Y +E + + + + + N TQKPE L+ RI
Sbjct: 331 DKDGRTYKPITKTRRMYLDEAKGIPISDVWDDIASFQTVVNAQERVGFNTQKPEKLIQRI 390
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ SS+ GDIILD F GS T+ AVA K+ R +IGIE ++ R+
Sbjct: 391 IDSSSNKGDIILDFFMGSSTTQAVAHKMGRQYIGIEQMDYINTVSVPRLQK 441
>gi|328912202|gb|AEB63798.1| DNA modification methylase [Bacillus amyloliquefaciens LL3]
Length = 278
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/291 (21%), Positives = 105/291 (36%), Gaps = 51/291 (17%)
Query: 14 NSIFEWK-DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
I E K ++I K + + L++L +S+DLI PPY + G+ S
Sbjct: 1 MKINELKFNEIYKIDCLDGLKELKNESIDLIVTSPPYADRREGEYKSIKTS--------- 51
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFW 124
Y + RVLKP+G+ ++ H ++ + L+ W
Sbjct: 52 -------EYVNWFIPIAKELYRVLKPSGSFFINIKSHCSKGERELYVYELVIALKKELGW 104
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-----------------------SPKA 161
D N +P RF+N E + + + KA
Sbjct: 105 RFVDEFTWTKNGVPGRFKGRFKNGFEPIFHFAKSSEIVFNPYAVGVPMKEESLKRANRKA 164
Query: 162 KGYTFNYDALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
G T N + M + L ++ + HP P L +
Sbjct: 165 TGLTKNGSGFAGMRRNETMVNRSLALPSNHLHIPQKSNQYTLQSKHPAVFPVELPEFFIK 224
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ T G ++LDPF GSGT+ ++ L R +IG E + YI+IA +R+
Sbjct: 225 AFTNEGQVVLDPFMGSGTTAIASEMLGRKWIGFETEAKYIEIANERLRGYA 275
>gi|312868808|ref|ZP_07728997.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
gi|311095651|gb|EFQ53906.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus oris PB013-T2-3]
Length = 321
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 33/269 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S+ +D+ I G+S ++ + P + DL DPPYNL D + K
Sbjct: 34 SLTAIRDRSINGDSFQLVRQFPDQFADLALVDPPYNL----------DKHYDGLNF---K 80
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S + Y +T+ W+ + LKP+ +L+V + + +L + + + +
Sbjct: 81 HQSTDEYQEYTQRWIDLVKPKLKPHASLYVFADWQTSIALAPVLAANFT--VKNRITWQR 138
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAK---------------GYTFNYDALKAANE--D 177
+G +N E + + + K Y N A
Sbjct: 139 EKGRGAKGNW-KNGMEDIWFLTMDDKKYTFNVDQVKQRRQVIAPYRENGQAKDWHESAAG 197
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ S + HPTQKPE LL++++++S+ PGD ILDPF G+G+S
Sbjct: 198 RFRDTMPSNFWDDISIPYWSMAENTGHPTQKPEKLLAKLILASSNPGDTILDPFAGAGSS 257
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
AKKL R F+G+E + Y R+
Sbjct: 258 LVTAKKLGRHFVGVEQSRLYTAWGVYRLQ 286
>gi|308272428|emb|CBX29032.1| hypothetical protein N47_J00130 [uncultured Desulfobacterium sp.]
Length = 600
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 108/275 (39%), Gaps = 26/275 (9%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDH----SLVDAVTD 70
++++ +I+G+ +S L + VDL+ DPP+ + S V+A +
Sbjct: 59 SDFRNLLIQGDCLSACAYLKQQNIKVDLVCIDPPFASGASYAKKIYLRNGVVSEVEAQDN 118
Query: 71 SWDKFSSF------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+ + + E + + LLA + V+ G+++V +H + +L +
Sbjct: 119 TIGEEIMYGDIWQKEDFLNWLYERLLAIKDVMSETGSIYVHLDWHIGHYVKILLDEVFGE 178
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---------- 174
L + N H+ + W S SP Y Y +
Sbjct: 179 ELFKNEIIWCYSGGAVPVDKLPNKHDVIYWYSKSPDVWTYNPIYKSYSEKTQQRGRTAVK 238
Query: 175 --NEDVQMRSDWLIPICSGSERL--RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
N ++ + + + ++ + TQKPE+LL RI+ S++ G I+ D
Sbjct: 239 GNNAGLREEGTPITDWWTDLTPVTSPTDPEKQYYVTQKPESLLKRIINLSSEAGMIVADF 298
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
F GSGT+ A+ +R FI ++ + + R+
Sbjct: 299 FSGSGTTAKSAEDEKRKFIACDIGINALQTTRDRL 333
>gi|170731541|ref|YP_001763488.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169814783|gb|ACA89366.1| DNA methylase N-4/N-6 domain protein [Burkholderia cenocepacia
MC0-3]
Length = 249
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 32/258 (12%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVT 69
+ +++ + +++S++ LP VDL+F DPPY+ R +
Sbjct: 8 DLINRVHQADALSIMRALPDACVDLVFTDPPYSSGGTTSASRSQAPSSKYIGGDVKTVYP 67
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
+ ++ + WL RV + L + + + +Q F
Sbjct: 68 EFQHDSKDQRSWTFWCMTWLAEAYRVCRNEAHLACFVDWRQLPSLTDAIQAAGFTWRGVA 127
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
VW K+ R F E L+WA+ + DV + +
Sbjct: 128 VWDKTGGRTRPRAGGFAQQSEFLVWATKGAVRRA-------------DVYLPGVF----- 169
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
SERL + K H T+KP L ++ + PG ++LDPF GSGT A AK+ ++I
Sbjct: 170 --SERLAHP---KRHMTEKPAQLARDVVRLA-PPGGVVLDPFTGSGTFLAAAKEAGLNWI 223
Query: 250 GIEMKQDYIDIATKRIAS 267
G E++ Y +AT R+A
Sbjct: 224 GCELEPSYHQVATARLAE 241
>gi|333027663|ref|ZP_08455727.1| putative DNA (cytosine-5-)-methyltransferase [Streptomyces sp.
Tu6071]
gi|332747515|gb|EGJ77956.1| putative DNA (cytosine-5-)-methyltransferase [Streptomyces sp.
Tu6071]
Length = 248
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/268 (19%), Positives = 93/268 (34%), Gaps = 33/268 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ------LNGQLYRPDHSLVDAVTDS---W 72
+ +G+++++L+ LP +SV + DPPYN G+ R + ++ D
Sbjct: 4 TLHRGDALTILKTLPDESVHAVITDPPYNSGGRTSSERTGRTARAKYVTSNSAHDLATFP 63
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ +Y ++ L R + V + LQ + I W
Sbjct: 64 GENRDQRSYRSWLTELLTEAYRAATEHSVAMVFSDWRQEPTTTDALQMAGWTWSGTISWI 123
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K P G D + G
Sbjct: 124 KPASRPRKGG-----------------------PKQDTEFVTWGVKGALDNTRDLYLPGH 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+++H TQKP ++ +++ G +LDPF GSG +G A + R+F+G+E
Sbjct: 161 YIASQPRKDRVHITQKPVEIMRQLVK-VCPEGGTVLDPFTGSGATGVAALREGRNFLGVE 219
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
+ Y DIA +R+ + + L
Sbjct: 220 LSTHYADIAERRLCAELTQDDFVLAGPE 247
>gi|269976406|ref|ZP_06183391.1| DNA methylase [Mobiluncus mulieris 28-1]
gi|269935207|gb|EEZ91756.1| DNA methylase [Mobiluncus mulieris 28-1]
Length = 354
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/309 (21%), Positives = 105/309 (33%), Gaps = 62/309 (20%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL-------------------------- 53
++ +I G+++ VL L ++ LI+ DPP+N
Sbjct: 33 ENTVIHGDNLPVLRGLADETFQLIYIDPPFNTGKVQSRVTMRTRQVREPGAAGGAEGADS 92
Query: 54 ------------NGQLYRPD------------HSLVDAVTDSWDKFSSFEAYDAFTRAW- 88
G + D + + D F W
Sbjct: 93 DGSPEPGGSPASRGASRKSDAAPSTAGSNSGSRVGFKGQSYKTIRGQVTSYNDEFADYWG 152
Query: 89 -----LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
L RVLKP+GTL++ Y + +L L + R
Sbjct: 153 FLAPRLEEAWRVLKPSGTLYLHLDYREVHYAKVLLDALFGRECFLNEIIWAYDYGARTKR 212
Query: 144 RFQNAHETLIWASPSPKAKGY------TFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
R+ H+ ++ PK + Y A + R + +
Sbjct: 213 RWPAKHDNILVYVKDPKQYYFDSESVDREPYMAPGLVTAEKAARGKLPTDVWWHTIVSPT 272
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ + TQKPE +L RI+ +S++PGD LD F GSGT+GAVA K+ R F+ ++
Sbjct: 273 GKEKTGYATQKPEGILRRIVAASSRPGDWALDFFAGSGTTGAVAGKMGRHFVLVDENPQA 332
Query: 258 IDIATKRIA 266
I + R A
Sbjct: 333 IAVMRARFA 341
>gi|254388731|ref|ZP_05003964.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|294813343|ref|ZP_06771986.1| Putative DNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|326441721|ref|ZP_08216455.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|197702451|gb|EDY48263.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|294325942|gb|EFG07585.1| Putative DNA methylase [Streptomyces clavuligerus ATCC 27064]
Length = 249
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 96/255 (37%), Gaps = 33/255 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--DSWDKFSSF- 78
+ +G++++VL+ LP +SVD + DPPYN R + T D+ ++F
Sbjct: 4 TLHRGDALTVLKSLPDESVDAVITDPPYNSGGRTSSERTARTARAKYTSGDAGHDLANFP 63
Query: 79 ------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+Y A+ A L R + + + V + LQ + I W
Sbjct: 64 GENRDQRSYRAWLTALLTESYRAAREHAVVMVFTDWRQEPTTSDALQMAGWTWSGTIPWI 123
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K P G D+ G
Sbjct: 124 KPASRPRKGG-----------------------PKQDSEFILWGVKGTLDKTRDLYLPGH 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+++H TQKP ++ +++ +PG +LDPF GSGT+G A RSF+G+E
Sbjct: 161 YIASQPRKDRVHITQKPVEVMRQLVQ-VARPGGTVLDPFTGSGTTGVAALLEGRSFVGVE 219
Query: 253 MKQDYIDIATKRIAS 267
+ Y DIA +R+
Sbjct: 220 LSDHYADIAEQRLRE 234
>gi|15645979|ref|NP_208159.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
26695]
gi|2314538|gb|AAD08411.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
26695]
Length = 260
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/264 (26%), Positives = 110/264 (41%), Gaps = 40/264 (15%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+KL KSVDL DPPYNL++ SWD F +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKND 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E + F+ AW+ LK G+ ++ + N L + LN I W K +
Sbjct: 46 EEFLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFA 105
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT-----------------------FNYDALKAAN 175
N + R +A E++++ S K + N
Sbjct: 106 NAKKRY-NHAQESILFYSMHKKNYTFNADEIRIAYESAERIKHAQSKGILKNNKRWFPNP 164
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ W I E+ + K + HP+ KP+AL+ R++ +S+ D+ILD F GSG
Sbjct: 165 KGKLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224
Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
+ VAK L R+FIG E +Y+
Sbjct: 225 MTSLVAKSLERNFIGCESHAEYVH 248
>gi|78777552|ref|YP_393867.1| site-specific DNA-methyltransferase (adenine-specific)
[Sulfurimonas denitrificans DSM 1251]
gi|78498092|gb|ABB44632.1| Site-specific DNA-methyltransferase (adenine-specific)
[Sulfurimonas denitrificans DSM 1251]
Length = 378
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 55/298 (18%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAK-----------SVDLIFADPPYNLQLNGQLY--- 58
+ EWK+++I G++I V++ L A +DLI+ DPP++ + + +
Sbjct: 57 SSDESEWKNRLIYGDNILVMQGLLAGDATSGLESMRGKIDLIYIDPPFDSKADYRTKITL 116
Query: 59 -------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+P A D+W +Y L+ R +L G+++V +H
Sbjct: 117 PNINLSQKPTVIEQFAYADTWK--DGTVSYLKMIYPRLVLMRELLSEKGSIYVHIDWHVG 174
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ +L ++ +F H+ + S A FN +
Sbjct: 175 HYVKILLDDIFGKGKFRNEIIWHYSTLGRPKDKFAQKHDQIFVYGKSDDAF---FNTEEA 231
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKL---------------------------- 203
K D + S + +G + + D K
Sbjct: 232 KIPYSDDYIESHFRDIDDNGKKCRKRFDAGKWRIYYPDEGMIPNDVWDIPYENSMSKERV 291
Query: 204 -HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ TQKP AL+ RI+ SST G +I D F GSGT+ VA++L R +I ++ + I +
Sbjct: 292 SYATQKPVALMERIIKSSTIKGQLIADFFGGSGTTAVVAERLNRQWISSDIGKPSIMV 349
>gi|296126937|ref|YP_003634189.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
12563]
gi|296018753|gb|ADG71990.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
12563]
Length = 322
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/285 (20%), Positives = 98/285 (34%), Gaps = 26/285 (9%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
L + + S+ +K I + + LP +DL DPPYNL +
Sbjct: 21 KFSKRLITLKEKTSLDSILNKTICNDFFESINYLPDNFIDLAIIDPPYNLNKDFGNLNFR 80
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ D F + LK +++V + + +L
Sbjct: 81 KKSDNDYNQYIDSF-------------ISLIIPHLKKTASIYVCCDLFSSSAVYDVLSKY 127
Query: 122 NFWILNDIVWRKSNPMPNFRGRR---------FQNAHETLIWASPSPKAKGYTFNYD--- 169
R+ F + N + I A + + +
Sbjct: 128 FIVRNRITWQREKGRGAQFNWKNALEDIWFATVSNNYYFNIDAVKMKRRVIAPYREEGKP 187
Query: 170 -ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ E + S + HPTQKPE L++++L++S+K GDI+
Sbjct: 188 KDWQETEEGKFRLTHPSNFWDDISVPYWSMAENTTHPTQKPEKLIAKLLLASSKEGDIVF 247
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
DPF GSGT+ VA KL R ++ IEM + Y + R+ N
Sbjct: 248 DPFVGSGTTVVVANKLNRKYVSIEMDKYYALLTEYRLEKSNTDKN 292
>gi|326784622|ref|YP_004324887.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
gi|310004655|gb|ADO99047.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
Length = 323
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/318 (21%), Positives = 112/318 (35%), Gaps = 74/318 (23%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+D I+ G+ L++ + + PPY + D + + E
Sbjct: 2 RDTILFGDCRQTLKEF-DEKARMCVTSPPYYGLRDYG----------GENDQIGQEQTPE 50
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNI-------------------------- 111
+ R VL +GT WV SY+N
Sbjct: 51 EFIEQLVNVFKEVRNVLTDDGTCWVNLGDSYYNYRPGKGQGLAKQTVSNTKQDLPDVCPR 110
Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+ ++ +++ DI+W K NPMP R +HE +
Sbjct: 111 RGNRLEGLKEKDLIGIPWMFAFAMRADGWYLRQDIIWHKPNPMPESVKDRCTKSHEYIFL 170
Query: 155 ASPSPKAK------------GYTFNYDALKAANED--VQMRSDWLIPICSGSER----LR 196
S + K T + K NE +Q S + ++R +
Sbjct: 171 FSKNKKYFYDNESIKEPAKDWGTRDRSKGKYHNEGTGLQPHSGLTKSYPTKNKRSVWSVT 230
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
NK + H P L+ +++ ++ GDI+LDPF GSGT+ AVAK L R +IG E+ +
Sbjct: 231 NKPYREAHFATYPPDLIEPCILAGSEKGDIVLDPFMGSGTTAAVAKSLGRDYIGCELHEK 290
Query: 257 YIDIATKRIASVQPLGNI 274
Y D+ +R++
Sbjct: 291 YGDLIRQRVSEYHVPIEE 308
>gi|332655236|ref|ZP_08420976.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
gi|332515741|gb|EGJ45351.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
Length = 328
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 63/320 (19%), Positives = 108/320 (33%), Gaps = 85/320 (26%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I G+ + +L+ LP SV PPY + + + ++ +
Sbjct: 16 LDIIHTGDCLKILKTLPDDSVHCCVTSPPYYALRDY-----------GMEAQIGRETTPK 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
Y + RRVL+P+GTLW+ S
Sbjct: 65 EYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFVDPKNPNGRTGQAVALNNKV 124
Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+ + L++ +++ NDI+W K NPMP R +E + S S
Sbjct: 125 EGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRCTRCYEHIFLFSKSK 184
Query: 160 KAK----------------------------------GYTFNYDALKAANEDVQMRSDWL 185
K + +++
Sbjct: 185 KYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEIKDCDINP 244
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ + H P L+ L++ G I+LDPF GSGT+G VA ++
Sbjct: 245 LRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTTGMVASQMG 304
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R F+G+E+ +Y ++A KRI
Sbjct: 305 RHFVGVELNPEYTELAYKRI 324
>gi|317013155|gb|ADU83763.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
Lithuania75]
Length = 258
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 40/264 (15%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+KL KSVDL DPPYNL++ SWD F +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKND 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E + F+ AW+ LK G+ ++ + N L++ LN I W K +
Sbjct: 46 EEFLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKAHFLNFITWVKKDGFA 105
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT-----------------------FNYDALKAAN 175
N + R +A E++++ S K + N
Sbjct: 106 NAKKRY-NHAQESILFYSMHKKNYTFNADEVRIAYESTERIKHAQSKGILKNNKRWFPNP 164
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ W I E+ + K + HP+ KP+AL+ R++ +S+ D+ILD F GSG
Sbjct: 165 KGKLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224
Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
+ VAK L R+FIG E +Y+
Sbjct: 225 MTSLVAKSLERNFIGCESHAEYVH 248
>gi|315586029|gb|ADU40410.1| site-specific DNA-methyltransferase (adenine-specific)
[Helicobacter pylori 35A]
Length = 260
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 71/264 (26%), Positives = 110/264 (41%), Gaps = 40/264 (15%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+KL KSVDL DPPYNL++ SWD F +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKND 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E + F+ AW+ LK G+ ++ + N L++ LN I W K +
Sbjct: 46 EEFLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFA 105
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT-----------------------FNYDALKAAN 175
N + R +A E++++ S K + N
Sbjct: 106 NAKKRY-NHAQESILFYSMHKKNYTFNADEIRTAYESTERIKHAQSKGILKNNKRWFPNP 164
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ W I E+ K + HP+ KP+AL+ R++ +S+ D+ILD F GSG
Sbjct: 165 KGKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224
Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
+ VAK L R+FIG E +Y+
Sbjct: 225 MTSLVAKSLGRNFIGCETHAEYVH 248
>gi|307150290|ref|YP_003885674.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306980518|gb|ADN12399.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
Length = 351
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 77/324 (23%), Positives = 126/324 (38%), Gaps = 58/324 (17%)
Query: 5 NSLAINENQN--SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
NSL E Q S+ EW++++I + + VL ++P+ VDLI PPY
Sbjct: 9 NSLTDVEQQQIKSLQEWQNRMILSDCLPVLREMPSNLVDLIVTSPPYADSRKKTYG---- 64
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-------VIGSYHN-IFRI 114
S Y + +R+LKP GT V G HN + ++
Sbjct: 65 ------------GISPNDYIDWFLPIAQELKRILKPEGTFILNIKEKVVKGERHNYVIKL 112
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK-- 172
+Q + + +W K N P RF++A E + + K K Y
Sbjct: 113 ILAMQQQGWLWTEEYIWHKKNCYPGKWPNRFRDAWERCLQFNRQKKFKMYQERVMVPMGD 172
Query: 173 AANEDVQMRSDWL-----------------------IPICSGSERLRNKDGEKLHPTQKP 209
AN ++ SD + + L + K H P
Sbjct: 173 WANSRLKKLSDTDKIRDPSKVESGFGKNISNWLGRSMAYPTNVLHLATECNNKNHSAAFP 232
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++L S + T+ D++LDPF GSGT+ AK+L R ++GIE+K++Y D+A I
Sbjct: 233 KSLPSWFINLFTETSDLVLDPFVGSGTTCIAAKELGRHYLGIEIKKEYYDLAVSNIE--- 289
Query: 270 PLGNIELTVLTGKRTEPRVAFNLL 293
L + +++ + + L
Sbjct: 290 ----KALFNIQAEKSAQKALNSSL 309
>gi|261379137|ref|ZP_05983710.1| DNA modification methylase [Neisseria cinerea ATCC 14685]
gi|269144409|gb|EEZ70827.1| DNA modification methylase [Neisseria cinerea ATCC 14685]
gi|325564263|gb|ADZ31429.1| M.NciI methyltransferase/endonuclease fusion protein [Neisseria
cinerea]
Length = 513
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 60/267 (22%), Positives = 106/267 (39%), Gaps = 35/267 (13%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSL----- 64
N+ ++ + +K I G+S+ ++KLP+KS+DLIF PPYNL+ +
Sbjct: 4 NKFNLEKILNKFICGDSLQKMKKLPSKSIDLIFTSPPYNLKNSTGNGMKDGRGGKWSNAR 63
Query: 65 -VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH--NIFRIGTMLQNL 121
++ + D + Y + R L R++K +G ++ + N
Sbjct: 64 LIEGYDNH-DDCMPHDEYVKWQRKCLKEMLRLIKDDGAIFYNHKWRVQNGLLQDRADIVK 122
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
F + I+W++ + G + K ++ + +D+
Sbjct: 123 GFPVRQIIIWKRKGGINFNPGYFLPTYEVIYLICKKPFKLAKGANSFGDIWEFTQDM--- 179
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
HP P L R++ S+ I+LDPF GSGT+ A
Sbjct: 180 -------------------NNEHPAPFPLELAKRVVQSTNAQ--IVLDPFMGSGTTAIAA 218
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
L R FIGIE+ +Y+ I+ KR ++
Sbjct: 219 ALLDRKFIGIELSSEYVKISKKRYNNI 245
>gi|322384140|ref|ZP_08057851.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321151132|gb|EFX44448.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 240
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 65/258 (25%), Positives = 100/258 (38%), Gaps = 32/258 (12%)
Query: 23 IIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQ---LYRPDHSLVDAVTDSWDKFSSF 78
I + I+ + L S DLI ADPPYNL+ G + V A D SF
Sbjct: 5 IYNKDCINGAKTHLLTNSADLIIADPPYNLKFGGTTMTKTKRPRHRVIANDD-----LSF 59
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ Y FT WL RVLK ++V + I ++ + F I N IVW K +
Sbjct: 60 KDYQRFTLEWLRQAHRVLKDGHHIYVFIDWRMHPYIALWMRKIGFEIKNLIVWDKQSMGL 119
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
++ Y F ++ + A + + R++
Sbjct: 120 GWQ----------------------YRFQHELVIFAIKGKTKARRIRSRKTADILRVKRI 157
Query: 199 DGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G+ +HPT+KP L+ I+ +ST+ G+ ++D F GSG L R E+ Q Y
Sbjct: 158 PGQYTVHPTEKPTELMKIIVENSTEEGETVVDFFSGSGPVTEACLNLNRRVKAFEIDQKY 217
Query: 258 IDIATKRIASVQPLGNIE 275
+ KR +
Sbjct: 218 YQMTVKRAEKISTKSLDF 235
>gi|167841358|ref|ZP_02468042.1| DNA methylase N-4/N-6 domain protein [Burkholderia thailandensis
MSMB43]
Length = 213
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 41/243 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ + + +L +SVD I DPPY L R S+ + V D W
Sbjct: 4 LYNGDCLVAMPQLAPESVDCIVTDPPY---LVNFRDRSGRSIANDVNDGW---------- 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
RVLK + ++ + + F + V+ KS +
Sbjct: 51 --LAPAFAEMFRVLKRDAVCISFYGWNKVDLFFDAWKAAGFRVAGHFVFTKSYAS---KA 105
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
+ HE+ + A D + G +
Sbjct: 106 GLVKYQHESAYLLAKGRPAAPAEPIADVMPF-----------------------PYSGNR 142
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT+KP L ++ + T+PG+ +LDPF GSG++ A++L R +IGIE+ Y A
Sbjct: 143 HHPTEKPVPALRTLIAAFTQPGETVLDPFAGSGSTCVAARELGRRYIGIELDATYFAAAK 202
Query: 263 KRI 265
R+
Sbjct: 203 ARL 205
>gi|120603779|ref|YP_968179.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
vulgaris DP4]
gi|120564008|gb|ABM29752.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris DP4]
Length = 262
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 88/244 (36%), Gaps = 32/244 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTDSWD 73
+I G S++VL LP SVD + DPPY+ Q + +
Sbjct: 11 TLINGESLAVLRTLPDASVDTVLTDPPYSSGGVTMAARQADPAQKYQQSNTKRTYPTMLG 70
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL C RV K + V + + + LQ + + W K
Sbjct: 71 DNRDQRSFTLWATLWLSECWRVAKDGARIMVFSDWRQLPSMTDALQAAGWQWRGIVTWHK 130
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ P+ F DA G
Sbjct: 131 PSARPSLG-----------------------DFKRDAEFVITGSKGKPLMHTRTCPPGVY 167
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R K+H T+KP ALL + ++ T PG ++LDPF GSG++G + R ++GIE+
Sbjct: 168 RHSVNTARKIHLTEKPVALLEDL-LAVTAPGGLVLDPFAGSGSTGEACLRTGRRYLGIEL 226
Query: 254 KQDY 257
DY
Sbjct: 227 SPDY 230
>gi|58865222|emb|CAA65779.2| site-specific DNA-methyltransferase [Geobacillus
stearothermophilus]
Length = 226
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 28/244 (11%)
Query: 32 LEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---DSWDKFSSFEAYDAFT 85
+ L +DLI ADPPY + + +WD + +F
Sbjct: 1 MRNLLNNYGECIDLIIADPPYVVSKESNFHTMRDRKNQRTGTHFGNWDIEFDNNEWISF- 59
Query: 86 RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
+VLKP G+L V + I + + F + ++W K+NPMP R RR+
Sbjct: 60 ------AYKVLKPGGSLIVFNDFKKATIIYDIAERCGFEYKDTLIWHKTNPMPRNRDRRY 113
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
E + W K N + P SG ++ HP
Sbjct: 114 IPNVEMIQWYVKKGKWTFNRQN---------EKYEGCILSYPSESGG------GFKRYHP 158
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKP L+ ++ + DIILDPF GSGT+G + L R+FIG E+ ++Y+ IA +RI
Sbjct: 159 TQKPVKLIEYLIRIHSNENDIILDPFMGSGTTGVASLNLNRNFIGFEINEEYVQIANERI 218
Query: 266 ASVQ 269
++Q
Sbjct: 219 KNIQ 222
>gi|309806637|ref|ZP_07700633.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
03V1-b]
gi|308166942|gb|EFO69125.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
03V1-b]
Length = 576
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 55/282 (19%), Positives = 106/282 (37%), Gaps = 45/282 (15%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ + IIKGN++ L L V I+ DPPYN + + + +++
Sbjct: 185 NDDDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTKND--------------SFNYN 230
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWR 132
+ + F + L R++L+ +GT++V + + ++ +
Sbjct: 231 DSFNHSTWLTFMKNRLELARKLLREDGTIFVQCDDNEQAYLKVLMDSIFGRNNFQAEIVW 290
Query: 133 KSNPMPNFRG--RRFQNAHETLIWASPSPK------------------------AKGYTF 166
++ + HE++++ S S + Y
Sbjct: 291 VLEGASGYKSLVNNYVRGHESILFYSKSNYFNFNKIYLPYSEKQIKRFSKLDDSGRRYKP 350
Query: 167 NYDALK-AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+ +E + + + + + N TQKPE L+ RI+ + T D
Sbjct: 351 ITKTRRLYLDEAKGVPLTDVWTDIASFQTIVNSPERTGFDTQKPEKLIERIIETLTTTHD 410
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
++LD GSGT+ AVA K+ R +IG+E DI +R+
Sbjct: 411 LVLDFHLGSGTTAAVAHKMGRRYIGVEQMDYIQDITVERLKK 452
>gi|282164296|ref|YP_003356681.1| putative DNA methylase [Methanocella paludicola SANAE]
gi|282156610|dbj|BAI61698.1| putative DNA methylase [Methanocella paludicola SANAE]
Length = 293
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 42/265 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI S +++LP SV L+ PPYN+ D + +
Sbjct: 53 LNKIFCK-SSERMDELPDNSVHLMVTSPPYNVGKEY-----------------DDDLTLD 94
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV--------------IGSYHNIFRIGTMLQNLNFWI 125
Y A RVL P G + + ++ + G +++ W
Sbjct: 95 EYRALLFCVWEEVYRVLVPGGRVCLNVANLGRKPYLPLHAFMAEDLLKAGFLMRGEVIWN 154
Query: 126 LNDIVWRKSNPMPNFRGRRFQ--NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ + + HE ++ S Y+ ++ +
Sbjct: 155 KASAAGTSTAWGSWQSAKNPTLRDVHEYILVFSKQ----SYSRTPGDKRSTITKEEFLEY 210
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
GSE + + HP P L SR + T GD++LDPF GSGT+ AK
Sbjct: 211 TKSVWSFGSESAK----KIGHPAPYPVELPSRCIKLYTFEGDVVLDPFIGSGTTAVAAKM 266
Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
L R ++G E+ ++Y+++A +R+ +
Sbjct: 267 LDRHYVGYEVDEEYVELARRRLKNH 291
>gi|46579511|ref|YP_010319.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46448926|gb|AAS95578.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|311233325|gb|ADP86179.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
Length = 247
Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 32/256 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTDSWD 73
+++G S+++L LP VD + DPPY+ Q + +
Sbjct: 11 TLLQGESLAILRTLPDGFVDTVLTDPPYSSGGVTMAARQADPAQKYQQSNTKRTYPAMLG 70
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL C RV K + V + + + LQ + + W K
Sbjct: 71 DNRDQRSFTLWATLWLSECWRVAKDGARIMVFTDWRQLPSMTDALQAAGWMWRGVVTWHK 130
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ P+ F DA G
Sbjct: 131 PSARPSLG-----------------------DFKRDAEYVITGSKGKPIMHSRKCPPGVY 167
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
K+H T+KP ALL + + T PG ++LDPF GSG++G R ++GIE+
Sbjct: 168 SHSVNTARKIHLTEKPVALLENL-LDITAPGGLVLDPFAGSGSTGVACLNTGRRYLGIEL 226
Query: 254 KQDYIDIATKRIASVQ 269
++Y A +R+A+ Q
Sbjct: 227 SKEYHQRACERLAAHQ 242
>gi|309805410|ref|ZP_07699457.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
09V1-c]
gi|308165228|gb|EFO67464.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
09V1-c]
Length = 576
Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 55/282 (19%), Positives = 106/282 (37%), Gaps = 45/282 (15%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ + IIKGN++ L L V I+ DPPYN + + + +++
Sbjct: 185 NDDDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTKND--------------SFNYN 230
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWR 132
+ + F + L R++L+ +GT++V + + ++ +
Sbjct: 231 DSFNHSTWLTFMKNRLELARKLLREDGTIFVQCDDNEQAYLKVLMDSIFGRNNFQAEIVW 290
Query: 133 KSNPMPNFRG--RRFQNAHETLIWASPSPK------------------------AKGYTF 166
++ + HE++++ S S + Y
Sbjct: 291 VLEGASGYKSLVNNYVRGHESILFYSKSNYFNFNKIYLPYSEKQIKRFSKLDDSGRRYKP 350
Query: 167 NYDALK-AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+ +E + + + + + N TQKPE L+ RI+ + T D
Sbjct: 351 ITKTRRLYLDEAKGVPLTDVWTDIASFQTIVNSPERTGFDTQKPEKLIERIIETLTTTHD 410
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
++LD GSGT+ AVA K+ R +IG+E DI +R+
Sbjct: 411 LVLDFHLGSGTTAAVAHKMGRRYIGVEQMDYIQDITVERLKK 452
>gi|127480|sp|P14751|MTR1_RHOSH RecName: Full=Modification methylase RsrI; Short=M.RsrI; AltName:
Full=Adenine-specific methyltransferase RsrI
gi|11514446|pdb|1EG2|A Chain A, Crystal Structure Of Rhodobacter Spheroides (N6 Adenosine)
Methyltransferase (M.Rsri)
gi|34810984|pdb|1NW5|A Chain A, Structure Of The Beta Class N6-Adenine Dna
Methyltransferase Rsri Bound To S-Adenosylmethionine
gi|34810985|pdb|1NW6|A Chain A, Structure Of The Beta Class N6-Adenine Dna
Methyltransferase Rsri Bound To Sinefungin
gi|34810986|pdb|1NW7|A Chain A, Structure Of The Beta Class N6-Adenine Dna
Methyltransferase Rsri Bound To
S-Adenosyl-L-Homocysteine
gi|46455|emb|CAA34475.1| unnamed protein product [Rhodobacter sphaeroides]
Length = 319
Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 95/245 (38%), Gaps = 38/245 (15%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + L KLP SV LI DPPYN+ L WD Y + +
Sbjct: 46 DCLDTLAKLPDDSVQLIICDPPYNIMLA----------------DWD---DHMDYIGWAK 86
Query: 87 AWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
WL RVL P G++ + G + +++ ++ + PN
Sbjct: 87 RWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANLIIWNYPNGM 146
Query: 142 G--RRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDVQMRSDWLIPICSG 191
R F N HE + W + + K Y A ++ + S +
Sbjct: 147 SAQRFFANRHEEIAWFAKTKKYFFDLDAVREPYDEETKAAYMKDKRLNPESVEKGRNPTN 206
Query: 192 SERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R+ +G L HPTQKP A++ R++ + + PG +LD F GSG + VA + R+
Sbjct: 207 VWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRN 266
Query: 248 FIGIE 252
I +
Sbjct: 267 SICTD 271
>gi|282164886|ref|YP_003357271.1| putative DNA methylase [Methanocella paludicola SANAE]
gi|282157200|dbj|BAI62288.1| putative DNA methylase [Methanocella paludicola SANAE]
Length = 305
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 65/279 (23%), Positives = 104/279 (37%), Gaps = 47/279 (16%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
DKI S +E+LP SV L+ PPYN+ D+
Sbjct: 50 SNNLDKIFCK-SSEHMEELPDNSVHLMVTSPPYNVGKEY-----------------DENL 91
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILN 127
S + Y F RVL P G V + N+ R I + ++ F +
Sbjct: 92 SLKEYLDFLANVWRDVYRVLVPGGR--VCLNVANLGRKPYLPLHSFIIKDMLDIGFLMRG 149
Query: 128 DIVWRKSNPMPNFRGRRFQNA---------HETLIWASPSPKAKGYTFNYDALKAANEDV 178
+I+W K++ + HE ++ S ++ N + E +
Sbjct: 150 EIIWNKASSAGGSTAWGSFQSASNPTLRDVHEYIMIFSKQSFSRNNDCNKKSSITKEEFL 209
Query: 179 QMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ +++ K+ HP P L R + T DIILDPF GSGT+
Sbjct: 210 EYTKSIWS--------FKSESATKIGHPAPYPIELPLRCIKLYTFEDDIILDPFMGSGTT 261
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
A ++ R F+G ++ +DYI +A KRI + +
Sbjct: 262 AIAALQVNRHFVGYDIDKDYIAVAEKRIKKYRDSLKQTI 300
>gi|260575307|ref|ZP_05843307.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
gi|259022567|gb|EEW25863.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
Length = 541
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 71/359 (19%), Positives = 124/359 (34%), Gaps = 112/359 (31%)
Query: 21 DKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRP------DHSLVDAVTDSWD 73
+ + G+++ VL + SVDLI+ DPP+N + + + ++A D+W
Sbjct: 3 NHLYYGDNLKVLRESIRDASVDLIYLDPPFNSNASYNVLFKGPQGADSAAQIEAFDDTWH 62
Query: 74 KFSSFEA-------------------------------YDAFTRAWLLACRRVLKPNGTL 102
S E Y A L+ RVLKP G+L
Sbjct: 63 WNDSAEEAFGDVMRGGNVAASTMLRAMRSFLGDNDMMAYLAMMAVRLVELHRVLKPTGSL 122
Query: 103 WVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
++ + +L + + + N + F H+T+++ S S K+
Sbjct: 123 YLHCDPTASHYLKVLLDAVFGNENYRNEIIWRRTNAHNVKSNVFPRVHDTILFYSKSDKS 182
Query: 162 KG------YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK----------------- 198
Y+ + +ED ++ + + + GS + +
Sbjct: 183 TWAKQFIGYSPEQLKRYSVDEDGRLFTGQDLTMIGGSAERKKEWRGTIPSSGRAWGASLE 242
Query: 199 ---------------------DGEKLHPTQKP---------------------------- 209
DG K+ +KP
Sbjct: 243 QREEWWAAGLILTKKDGTPRLDGRKVFLDEKPGKQADSLWTDILRVGNTADERLGYPTQK 302
Query: 210 -EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
ALL RIL +S+ PGD++LDPF G GT+ A+KL R +IGI++ + + KR+
Sbjct: 303 PVALLERILNASSNPGDVVLDPFCGCGTTVHAAQKLGRQWIGIDVTHLAVGLIEKRLRD 361
>gi|158333607|ref|YP_001514779.1| DNA methylase [Acaryochloris marina MBIC11017]
gi|158303848|gb|ABW25465.1| DNA methylase [Acaryochloris marina MBIC11017]
Length = 289
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 39/263 (14%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I+G+ + + KL S++L+ DPPYNL + + + T + S AY
Sbjct: 18 IQGDCLDIAPKLLQGSINLLILDPPYNL----------NKVFNGRTFA---KQSVAAYTE 64
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
+ + +L+P+ ++++ G + + ++
Sbjct: 65 WLDYICSKLKPLLRPDASIYICGDWFSS---ASIFTVATSHFQVRNRITWEREKGRGAHS 121
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDA--------------------LKAANEDVQMRSD 183
++NA E + + + + YTFN A +
Sbjct: 122 NWKNASEDIWFCT---NSNSYTFNSQAVKQRRRVLAPYRRPDGSPKDWSQTENGNFRDTF 178
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
S + HPTQK E L+++++++S+ PGD +LDPF GSGT+ VAKK
Sbjct: 179 ASNLWTDISIPFWSMPENTDHPTQKSEKLVAKLILASSNPGDTVLDPFLGSGTTSVVAKK 238
Query: 244 LRRSFIGIEMKQDYIDIATKRIA 266
L+R FIGIE+ ++Y ++ +RI
Sbjct: 239 LQRQFIGIEIDEEYCLLSERRIE 261
>gi|84623268|ref|YP_450640.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84367208|dbj|BAE68366.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 233
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 62/247 (25%), Positives = 97/247 (39%), Gaps = 35/247 (14%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTD 70
K+++++G++++++ L A S D + DPPY Y D D V D
Sbjct: 2 KNQLLQGDALTIMPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
D+ + A+ + WL C R+LK + + + + LQ F V
Sbjct: 62 ERDQ----RGHLAWMQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAV 117
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
W K+ + GR A E ++W S M D P+
Sbjct: 118 WDKTEGVRPQLGRFRNQA-EYIVWGSKG--------------------GMPLDRRAPVLP 156
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G R +K H T KP L+ ++ + G ILDPF GSGT+ A+ + G
Sbjct: 157 GVVRTPVLKADKHHLTGKPTELMRSLVRIC-EAGGRILDPFAGSGTTLVAAELEGYRWTG 215
Query: 251 IEMKQDY 257
+EM Q Y
Sbjct: 216 VEMTQHY 222
>gi|34810987|pdb|1NW8|A Chain A, Structure Of L72p Mutant Beta Class N6-Adenine Dna
Methyltransferase Rsri
Length = 319
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 38/245 (15%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + L KLP SV LI DPPYN+ + WD Y + +
Sbjct: 46 DCLDTLAKLPDDSVQLIICDPPYNI----------------MPADWD---DHMDYIGWAK 86
Query: 87 AWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
WL RVL P G++ + G + +++ ++ + PN
Sbjct: 87 RWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANLIIWNYPNGM 146
Query: 142 G--RRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDVQMRSDWLIPICSG 191
R F N HE + W + + K Y A ++ + S +
Sbjct: 147 SAQRFFANRHEEIAWFAKTKKYFFDLDAVREPYDEETKAAYMKDKRLNPESVEKGRNPTN 206
Query: 192 SERLRNKDGEKL----HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R+ +G L HPTQKP A++ R++ + + PG +LD F GSG + VA + R+
Sbjct: 207 VWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRN 266
Query: 248 FIGIE 252
I +
Sbjct: 267 SICTD 271
>gi|283785669|ref|YP_003365534.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
gi|282949123|emb|CBG88731.1| putative prophage DNA adenine methylase [Citrobacter rodentium
ICC168]
Length = 227
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 31/245 (12%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD--KFSSFE-------AYD 82
+ + +S+D + DPPY+ + R + + + +F F ++
Sbjct: 1 MPLIEPESIDALITDPPYSSGATHKAGRTNQGSHAKYLNGENLHRFDGFAGENMDARSWA 60
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+T+ W+ R ++P G V + + + Q F I W K
Sbjct: 61 YWTQLWMAQAHRAVRPGGYALVFTDWRQLPALTDAFQASGFTWRGIIAWNKGRGSRTPHT 120
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
F++ E ++W S K + +D +K
Sbjct: 121 GYFRHQCEYIVWGSKGHLDKSPSGPFDGCMTF---------------------PVIPSKK 159
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+HPT KPE L++ ++ ++ G +LDPF GSGT+G A K R FIGIE Y D+AT
Sbjct: 160 MHPTGKPEELMAELVRTA-NSGGTVLDPFMGSGTTGVAALKAGRKFIGIETSDHYFDVAT 218
Query: 263 KRIAS 267
+R+ +
Sbjct: 219 QRLKT 223
>gi|291296771|ref|YP_003508169.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
DSM 1279]
gi|290471730|gb|ADD29149.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
Length = 313
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 66/268 (24%), Positives = 115/268 (42%), Gaps = 45/268 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+ +L+++P S+ L+ PPYN+ + + +AY
Sbjct: 23 IYPGDCTELLKQIPDASISLVITSPPYNIGKPYESRKA-----------------LDAYL 65
Query: 83 AFTRAWLLACRRVLKPNGT-LWVIGSYHN-------IFRIGTMLQNLNFWILNDIVWRKS 134
A+ + RVLKP G+ +W +G+Y + + + NL + N IVW
Sbjct: 66 AWQEGVVKESVRVLKPTGSLVWQVGNYVDNGEILPLDMLLFPIFTNLGLKLRNRIVWAFE 125
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE--DVQMRSDWLIPICSGS 192
+ + RRF +E +W + + + YTFN D+++ + + + SG+
Sbjct: 126 HGL--HAKRRFSGRYEVALWFTKTDE---YTFNLDSVRVPQKYPNKKHFKGPKKGELSGN 180
Query: 193 ERLRNKD-------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+N + HP Q P L+ R +++ T+ D +LDPF GSGT+
Sbjct: 181 PLGKNPGDVWVFPNVKANHVEKTGHPAQYPVELVERFVLALTEEDDWVLDPFGGSGTTLI 240
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
A RR E+ DY++IA +R+
Sbjct: 241 AALMHRRRGAMAEIIPDYVEIAQQRLRE 268
>gi|58040318|ref|YP_192282.1| DNA-methyltransferase (DNA-modification methylase) protein
[Gluconobacter oxydans 621H]
gi|58002732|gb|AAW61626.1| Probable DNA-methyltransferase (DNA-modification methylase) protein
[Gluconobacter oxydans 621H]
Length = 272
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 34/275 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+I+G+ +VL ++P++SVD++ PPYNL + + Y+ +A
Sbjct: 12 HTLIRGDCTTVLRRMPSQSVDVVVTSPPYNLGVPYRTYQDR--------------LPEDA 57
Query: 81 YDAFTRAWLLACRRVLKPNGTLWV---------IGSYHNIFRIGTMLQNLNFWILNDIVW 131
Y + + RV+K +G+ ++ + + R+ + N +
Sbjct: 58 YLDWLEDVCTSLCRVMKDDGSFFLNIAGSSSQPWMPFELMTRLRKLFVLQNHITWIKSIS 117
Query: 132 R----KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ P R HE + + + + ++ R
Sbjct: 118 VGEITYGHFKPLNSARFVNRNHEHVFHLTKTGNVPVQRLDAGVPFTDKSNIVRRQHITDR 177
Query: 188 ICSGS------ERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAV 240
C G E +R++ + HP P AL + +PG ++LDPF GSGT+
Sbjct: 178 RCRGDTWFIPYETVRSRKEKFSHPGTFPVALPEACIRLHGLRPGGVLLDPFMGSGTTLVA 237
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
A+++ IGI+ Y+++A KR+ + + +
Sbjct: 238 AERMGCVGIGIDTDTSYVNVARKRVRAAIDHEDED 272
>gi|159899275|ref|YP_001545522.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892314|gb|ABX05394.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
ATCC 23779]
Length = 311
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 59/288 (20%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +G+ ++ L+ +P++S+D++FADPP+NL N D L Y
Sbjct: 28 LYQGDCLNFLQAIPSESIDMVFADPPFNLGKNYGKGINDQLL-------------DAEYL 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
++ +W+ R++KP G + + + G+ L + I R P RG
Sbjct: 75 EWSYSWISELIRIIKPGGAILLFNLPKWLISYGSYLNQAGMMFRHWIACRMPKAFP--RG 132
Query: 143 RRFQNAHETLIWASPSPKAKGYTFN---------------------------------YD 169
++ AH L++ + + +D
Sbjct: 133 KKLSPAHYGLLYYTKGEPSTFNKVYIPIPVCRHCGKEIRDYGGHRKKLNPQGLNLMDIFD 192
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK--------PEALLSRILVSST 221
+ D + + + + +E L + H K P L R++ +T
Sbjct: 193 MPEEVWCDESLEAHSTNQLWTPAEDLWDDIPTVRHSKHKTRGANELAPIML-ERLIALTT 251
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
P D+ILDPF GSGT+ A+KL+R +IGIE+ + ID A +R+ ++
Sbjct: 252 NPHDLILDPFGGSGTTYYAAEKLQRRWIGIEIGE--IDPAIQRLQNLH 297
>gi|16081887|ref|NP_394290.1| hypothetical protein Ta0829 [Thermoplasma acidophilum DSM 1728]
gi|10640106|emb|CAC11958.1| hypothetical protein [Thermoplasma acidophilum]
Length = 309
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/283 (21%), Positives = 107/283 (37%), Gaps = 46/283 (16%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
+N++ EN+ D+I S ++++P S+ L+ PPYN+
Sbjct: 41 ENNIDFTENKVPEIA-LDRIFCK-SSEKMDEIPDNSIHLMVTSPPYNVGKLY-------- 90
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM------ 117
DK S Y F + RVL P G + + N+ R +
Sbjct: 91 ---------DKDMSLAEYRDFLSSVWKEVYRVLVPGGRACINIA--NLGRKPYIPLHAFI 139
Query: 118 ---LQNLNFWILNDIVWRKSNPMPNFRGRRF---------QNAHETLIWASPSPKAKGYT 165
+ L F + +++W K + +++HE ++ S +G
Sbjct: 140 IEDMIKLGFLMRGEVIWDKGATASSSVAWGTYLSAKNPVLRDSHEYILIFSKQTFTRGIK 199
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
N + + E ++ + R+ HP P L R + T +
Sbjct: 200 ENMRSTMSKEEFIEYTKSVWSFGAESATRI-------GHPAPFPVELPKRCIKLYTFEEE 252
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
++LDPF GSGT+ A L R F+G ++ +Y+ +A KRI +
Sbjct: 253 VVLDPFIGSGTTAISALMLNRHFVGYDVDPEYVKLANKRINMI 295
>gi|166365170|ref|YP_001657443.1| putative adenine-specific DNA-methyltransferase [Microcystis
aeruginosa NIES-843]
gi|166087543|dbj|BAG02251.1| putative adenine-specific DNA-methyltransferase [Microcystis
aeruginosa NIES-843]
Length = 349
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 64/276 (23%), Positives = 109/276 (39%), Gaps = 45/276 (16%)
Query: 23 IIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ +G++ L KL +DL PPYN+ + + S
Sbjct: 87 LYQGDATDFLSKLSHSDIKIDLTVTSPPYNIGKEYE-----------------RVLSIND 129
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG------TMLQNLNFWILNDIVWRKS 134
Y + WL ++ + NG LW+ Y + G +L + + + L + K
Sbjct: 130 YVDWCANWLRQIYQITQDNGALWLNVGYLEVPEKGLCVPIPYLLWDKSPFYLLQEIVWKY 189
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE----------------DV 178
+ + R + L + + YTFN D ++ N
Sbjct: 190 GAGVSTKNRLSPRNEKWLFYLKNCQE---YTFNLDNIRDPNVKYPNQKKNGKYRCNPLGK 246
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
W +P + E+ R+ HP Q P A++ RI+ +S+ P +IILDPF GS ++G
Sbjct: 247 NPSDVWEVPKVTTGEK-RSSKERTGHPAQFPLAIVERIIQASSNPVEIILDPFAGSCSTG 305
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
A L R F+G E++ DY +IA +R + +
Sbjct: 306 IAALGLGRIFVGFEIRPDYCEIAAERFKRFKKERSN 341
>gi|154499042|ref|ZP_02037420.1| hypothetical protein BACCAP_03034 [Bacteroides capillosus ATCC
29799]
gi|150271882|gb|EDM99108.1| hypothetical protein BACCAP_03034 [Bacteroides capillosus ATCC
29799]
Length = 342
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/320 (19%), Positives = 107/320 (33%), Gaps = 85/320 (26%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I G+ + +++ LP SV PPY + + + ++ +
Sbjct: 30 LDIIHTGDCLEIMKTLPDDSVHCCVTSPPYYALRDY-----------GMEAQIGRETTPK 78
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV--------------IGSYHNI-------------- 111
Y + RRVL+P+GTLW+ N
Sbjct: 79 EYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFIDPKNPYGRNGQAVALNNKV 138
Query: 112 ------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+ + L++ +++ NDI+W K NPMP R +E + S S
Sbjct: 139 EGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRLSRCYEHIFLFSKSR 198
Query: 160 KAK----------------------------------GYTFNYDALKAANEDVQMRSDWL 185
K + +++
Sbjct: 199 KYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEIKDADINP 258
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ + H P L+ L++ G I+LDPF GSGT+G VA ++
Sbjct: 259 LRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTTGMVASQMG 318
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R F+GIE+ Y ++A KRI
Sbjct: 319 RHFVGIELNPAYSELAYKRI 338
>gi|147919272|ref|YP_686992.1| putative N6 adenine-specific DNA methyltransferase [uncultured
methanogenic archaeon RC-I]
gi|110622388|emb|CAJ37666.1| putative N6 adenine-specific DNA methyltransferase [uncultured
methanogenic archaeon RC-I]
Length = 307
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 59/259 (22%), Positives = 93/259 (35%), Gaps = 45/259 (17%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
+E+LP SV L+ PPYN+ D+ + + Y F
Sbjct: 76 EQMEELPDCSVHLMVTSPPYNVGKEY-----------------DEDLTLQEYRDFLSRVW 118
Query: 90 LACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILNDIVWRK--SNPMP 138
RVL P G V + N+ R + L F + +I+W K +
Sbjct: 119 KETYRVLVPGGRACV--NVANLGRKPYLSLSSLLTADLLEAGFLMRGEIIWNKAATASPS 176
Query: 139 NFRGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
G + HE ++ S ++ + G
Sbjct: 177 TAWGSWQSASNPTLRDVHEYILVFSKDTFSRAGKGRTSTITRDE----FLEYTKSVWTFG 232
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+E R + HP P L +R + T GD++LDPF GSGT+ A + R F+G
Sbjct: 233 AESAR----KIGHPAPFPVELPARCIKLYTFEGDVVLDPFMGSGTTAVAALQNGRHFVGY 288
Query: 252 EMKQDYIDIATKRIASVQP 270
E+ +Y++ A RI + Q
Sbjct: 289 EIDPEYVEKAEARIRACQK 307
>gi|159028859|emb|CAO90664.1| nmeSIM [Microcystis aeruginosa PCC 7806]
Length = 349
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 64/276 (23%), Positives = 109/276 (39%), Gaps = 45/276 (16%)
Query: 23 IIKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ +G++ L KL +DL PPYN+ + + S
Sbjct: 87 LYQGDATDFLSKLSHSDIKIDLTVTSPPYNIGKEYE-----------------RVLSIND 129
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG------TMLQNLNFWILNDIVWRKS 134
Y + WL ++ + NG W+ Y + G +L + + + L + K
Sbjct: 130 YVDWCANWLGQIYQITQDNGAFWLNVGYLEVPEKGLCVPIPYLLWDKSPFYLLQEIVWKY 189
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE----------------DV 178
+ + R + L + + YTFN D ++ N
Sbjct: 190 GAGVSTKNRLSPRNEKWLFYLKNCQE---YTFNLDNIRDPNVKYPNQKKNGKYRCNPLGK 246
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
W +P + E+ R+ HP Q P A++ RI+ +S+ P +IILDPF GS ++G
Sbjct: 247 NPSDVWEVPKVTTGEK-RSSKERTGHPAQFPLAIVERIIQASSNPVEIILDPFAGSCSTG 305
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
A L R F+G E++QDY +IA +R + +
Sbjct: 306 IAALGLGRIFVGFEIRQDYCEIAAERFKRFKKERSN 341
>gi|219849128|ref|YP_002463561.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aggregans DSM 9485]
gi|219543387|gb|ACL25125.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
9485]
Length = 329
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/276 (22%), Positives = 99/276 (35%), Gaps = 53/276 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +L ++P SV LI PPYNL + S E Y
Sbjct: 25 LFSGDVSELLTQVPDNSVALIVTSPPYNLGKEYEDRV-----------------SIEQYL 67
Query: 83 AFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNLNF-----WILNDIVWRKSNP 136
+ RVL+ +G+ W +G++ + + +
Sbjct: 68 KTQAQVIAQLHRVLREDGSICWQVGNFVENGEVYPLDVLYYPIFKELGMRLRNRIIWKFG 127
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQ----- 179
RRF +ET++W + + Y FN DA K N+
Sbjct: 128 HGLHASRRFSGRYETILWFTK---SDRYVFNLDAVRVPAKYPGKRHFKGPNKGKPSGNPL 184
Query: 180 --MRSDWLIPICSGSERL--------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
SD + E L N + +HP Q P L+ R +++ T GD + D
Sbjct: 185 GKNPSDVWEILVQDWEELVWDIPNVKSNHPEKTVHPCQFPIELVERCVLALTNEGDWVFD 244
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
P+ G G++ A R +G E + Y++IA +RI
Sbjct: 245 PYMGVGSALIAALMHDRRAMGCEKEAAYVEIARQRI 280
>gi|122879126|ref|YP_200356.6| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 233
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/247 (25%), Positives = 97/247 (39%), Gaps = 35/247 (14%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTD 70
K+++++G+++++L L A S D + DPPY Y D D V D
Sbjct: 2 KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
D+ + A+ + WL C R+LK + + + + LQ F V
Sbjct: 62 ERDQ----RGHLAWMQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAV 117
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
W K+ + GR A E ++W S M D P+
Sbjct: 118 WDKTEGVRPQLGRFRNQA-EYIVWGSKG--------------------GMPLDRRAPVLP 156
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G R +K H T KP L+ ++ + G ILDPF GSGT+ A+ + G
Sbjct: 157 GVVRTPVLKADKHHLTGKPTELMRSLVRIC-EAGGRILDPFAGSGTTLVAAELEGYRWTG 215
Query: 251 IEMKQDY 257
+EM Q Y
Sbjct: 216 VEMTQHY 222
>gi|296122352|ref|YP_003630130.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
3776]
gi|296014692|gb|ADG67931.1| DNA methylase N-4/N-6 domain protein [Planctomyces limnophilus DSM
3776]
Length = 269
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/279 (23%), Positives = 100/279 (35%), Gaps = 33/279 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--------LYRPDHSLVDAVTDSWD 73
+ G+ VL KL VD + DPPY G Y + V+ D
Sbjct: 11 TLYHGDLFEVLPKLSGLVVDTLLTDPPYCSGAAGGGAKCDPRLKYCQNGQNCGRVSFDGD 70
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
S +Y ++ WL CRR L+ V + + I +Q +F + W K
Sbjct: 71 NKDSI-SYGWWSMLWLKLCRRSLRETSYAMVFTDWRQLPTITNAMQGADFIHRGTMAWDK 129
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
AS +P + + + G
Sbjct: 130 G-------------------LASRAPHKGYIRHQCEFIPWGTLGKC-ANRSDTGPFPGCL 169
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R + + +K H T KP ALL ++ G ++LDPF GSGT+ A+ R IGIE+
Sbjct: 170 RHQVRQDDKHHMTGKPTALLLELVQIC-PAGGMVLDPFAGSGTTLVAAQASGRRAIGIEL 228
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTG---KRTEPRVA 289
+ Y +IA KR+ + G + KR P +
Sbjct: 229 SEAYCEIAAKRLELLASKGPESIARPQKRIAKRPPPPCS 267
>gi|303235466|ref|ZP_07322079.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
gi|302484333|gb|EFL47315.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
Length = 267
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 111/290 (38%), Gaps = 58/290 (20%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
I E+ + II GN + V+ K P ++DL+ PPY D
Sbjct: 2 IDEYINTIINGNCVDVIRKFPDNAIDLVVTSPPY-----------------------DNL 38
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILN 127
++ Y + RV+K +G + + S I F+ + F + +
Sbjct: 39 RDYKGYTFPFDDIVEQLYRVVKEHGIVVWVVSDATIEGSETCTSFKQALAFVKMGFNLHD 98
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
++++K+NP+P +R+ N E + S T N + + +++
Sbjct: 99 TMIFQKTNPVPQIYRKRYTNVFEYMFVFSK---GSVLTHNAIKIPCLHAGLELNGTTYKN 155
Query: 188 ICSGSE-RLRNKD-----------------------GEKLHPTQKPEALLSRILVSSTKP 223
G + R + K HP P L + + S T
Sbjct: 156 YSKGEQTRTKQAKPVKQDKLKGNIWEYVVGKKAVDQEAKGHPAPFPFELAADHIKSWTDE 215
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
I+LDP GSGT+ A +L+R FIGI++ Q+Y ++A +R+ + +
Sbjct: 216 DAIVLDPMCGSGTTCVAAYELKRKFIGIDISQEYCELAKRRLKHHRQNPS 265
>gi|319778768|ref|YP_004129681.1| Modification methylase BamHII [Taylorella equigenitalis MCE9]
gi|317108792|gb|ADU91538.1| Modification methylase BamHII [Taylorella equigenitalis MCE9]
Length = 252
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 74/255 (29%), Positives = 103/255 (40%), Gaps = 20/255 (7%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L ++ KSV+L+ PPYN+ L +V+ + + FS
Sbjct: 4 LNKIYNESCLDTLSRMEDKSVNLVITSPPYNMNLRIRNGNYCSRQIVEEFSTKYSGFSDN 63
Query: 79 ---EAYDAFTRAWLLACRRV--LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E Y F + L RV L V GS IFRI L L DI+
Sbjct: 64 MPIEEYFQFHLSVLKELLRVSDLVFYNVQIVTGSKRAIFRIMGELN----EQLKDIIVWD 119
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
R N LI S A K AN + +D
Sbjct: 120 KGVAQPAMAERVLNRQSELILVFESENAIS-----RQFKNANFERGTLNDIWQIR----- 169
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R K H PE L+ IL++ +K DI+ DPF G+GT+G V KK+ R FIG E+
Sbjct: 170 RGAKDKFTKGHSAVFPEELVETILINFSKENDIVYDPFMGTGTTGLVCKKMNRKFIGSEL 229
Query: 254 KQDYIDIATKRIASV 268
+ Y + AT+RI +
Sbjct: 230 MKSYAEQATERINNF 244
>gi|71274631|ref|ZP_00650919.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71899657|ref|ZP_00681811.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|170730897|ref|YP_001776330.1| DNA modification methylase-like protein [Xylella fastidiosa M12]
gi|71164363|gb|EAO14077.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71730609|gb|EAO32686.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|167965690|gb|ACA12700.1| DNA modification methylase-like protein [Xylella fastidiosa M12]
Length = 273
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/271 (19%), Positives = 98/271 (36%), Gaps = 33/271 (12%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSL- 64
+ + NS + I G+ I V++ LPA+S +I PPYNL+ +
Sbjct: 25 KLPKGDNSARNLRGTIHSGDCIKVMQTLPAESFRVIVTSPPYNLKNSTGNGMKDGRGGKW 84
Query: 65 -----VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
++ + D + Y + R L R+L+ +G ++ + +
Sbjct: 85 ANAALIEGYDNHED-VMPHDEYVQWQRDCLTEMMRLLRNDGAIFYNHKWRVQAGLLQDRT 143
Query: 120 NLNFWI-LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
++ + I+ + N NF F +E + + N
Sbjct: 144 DIVTGFPVRQIIIWQRNGGINFNSGYFLPTYEVIYLIAKPDFKLKPKAN----------- 192
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
G ++ + HP P L R + S +LDPF GSGT+
Sbjct: 193 ----------AIGDVWTIPQESKNPHPAPFPVELAQRCIESVGA--GPVLDPFMGSGTTA 240
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
A+ L ++GIE Y++++ R+ ++
Sbjct: 241 VAAEILGYDWVGIEKSPKYVEMSLDRLKRLK 271
>gi|110598447|ref|ZP_01386718.1| DNA methylase N-4/N-6 [Chlorobium ferrooxidans DSM 13031]
gi|110339897|gb|EAT58401.1| DNA methylase N-4/N-6 [Chlorobium ferrooxidans DSM 13031]
Length = 368
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/280 (22%), Positives = 111/280 (39%), Gaps = 56/280 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I G++ ++++LP + + PPY + V + + Y
Sbjct: 95 QVINGDTRDIIKQLPDDTFRCVVTSPPYWGVRDY-----------GVENQIGAEPDLQDY 143
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-----------------------IGSYHNI------- 111
RRVLK +GT W+ SY
Sbjct: 144 IKTLVEIFSEVRRVLKSDGTFWLNIGNTYTSGGRKWRQEDSKNRGRAMSYRPPTPDGLKK 203
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ + Q +++ NDI+W K N P R AHE L S ++ Y
Sbjct: 204 KDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFSK---SEQY 260
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
FN +A+K + + + +E + H P+ L+ +++ ++
Sbjct: 261 YFNQEAIKESYTNGNGFKNKRTVWSINTE-----PCAEAHFAVFPKNLVRPCILAGSEEN 315
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
D+ILDPF+G+GT G V+++L R +GIE+ DY+DI+ +R
Sbjct: 316 DLILDPFYGAGTVGIVSQELNRKCVGIEINPDYVDISGRR 355
>gi|226201122|ref|YP_002756736.1| putative methylase [Escherichia coli]
gi|260763836|ref|YP_003237875.1| putative adenine DNA methyltransferase [Escherichia coli O26:H11
str. 11368]
gi|284000191|ref|YP_003377878.1| DNA modification methylase [Escherichia coli O26:H-]
gi|219881751|gb|ACL52121.1| putative methylase [Escherichia coli]
gi|257757261|dbj|BAI28762.1| putative adenine DNA methyltransferase [Escherichia coli O26:H11
str. 11368]
gi|283445131|gb|ADB20475.1| DNA modification methylase [Escherichia coli O26:H-]
gi|323157010|gb|EFZ43142.1| DNA methylase family protein [Escherichia coli EPECa14]
gi|325699424|gb|ADZ45155.1| DNA modification methylase [Escherichia coli]
Length = 227
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/266 (23%), Positives = 100/266 (37%), Gaps = 43/266 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ V D W + +S
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + +H I R + F + +V+ K+ +
Sbjct: 57 ---------EMYRVLKKDALMVSFYGWHRIDRFMAVWIRAGFSVAGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A+ D L G
Sbjct: 105 SAYVAYRHECAYILAKGSPARPRNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNSIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPR 287
+R+A+VQ R EP
Sbjct: 202 QQRLAAVQRAMQQ--GAANDNRFEPE 225
>gi|48477657|ref|YP_023363.1| type II restriction modification system, methylation subunit
[Picrophilus torridus DSM 9790]
gi|48430305|gb|AAT43170.1| type II restriction modification system, methylation subunit
[Picrophilus torridus DSM 9790]
Length = 314
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 42/282 (14%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ + N+ +EN+ DKI S ++++P SV L+ PPYN+
Sbjct: 38 LKETNTFNFSENK-IPESTLDKIFLK-SSEKMDEIPDDSVHLMITSPPYNVGKLY----- 90
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY------------ 108
DK S Y F RVL P G + +
Sbjct: 91 ------------DKDMSLAEYREFLVNVWKEVYRVLVPGGRACINIANLGRKPYIPLHAY 138
Query: 109 --HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF--QNAHETLIWASPSPKAKGY 164
++ ++G +++ W + + +++HE ++ S +G
Sbjct: 139 IIEDMIKLGYLMRGEIIWNKGNTASSSVAWGTYMSAKNPVLRDSHEYILVFSKKSFTRGV 198
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
+ E ++ + ++ HP P L R++ +
Sbjct: 199 KEGMKSTMTKEEFIEYTKSIWSINAESATKI-------GHPAPFPVELPKRLIKLYSFED 251
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+++LDPF GSGT+ A +L R +IG ++ Q+YI+IA RI
Sbjct: 252 EVVLDPFIGSGTTAIAAIELNRHYIGYDIDQEYINIANSRIR 293
>gi|126179572|ref|YP_001047537.1| DNA methylase N-4/N-6 domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862366|gb|ABN57555.1| DNA methylase N-4/N-6 domain protein [Methanoculleus marisnigri
JR1]
Length = 284
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/290 (22%), Positives = 99/290 (34%), Gaps = 56/290 (19%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I + I + +LPA SVD+I PPYN+ + Y D E
Sbjct: 14 NTIHTMDCIEGMRRLPAGSVDVIVTSPPYNIGKDYNSY--------------DDRKPRED 59
Query: 81 YDAFTRAWLLACRRVLKPNGTL-----------WVIGSYHNIFRIGTMLQNLNFWILNDI 129
Y + + RVL +G+ W+ FR LQN+ W+ +
Sbjct: 60 YLGWLAEFAAGAARVLADDGSFFLNIGGKPRDPWIPFDAVQRFRPHFELQNVIHWVKSIA 119
Query: 130 VWRKSNPM--------------PNFRGRRFQNAHETLIWASPSPK----------AKGYT 165
+ + P R HE + +
Sbjct: 120 IEKADMGGYENITGDIAVGHYQPVNSARYLSQCHEHIFHFTKGGDVALDKLGVGVPYQDK 179
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPG 224
N KAA D++ R + R + HPT PE L + + +PG
Sbjct: 180 SNIGRWKAAERDLRDRGNTWFIP------YRTIRSSRPHPTSFPEKLPEMCIRLHGCRPG 233
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
++LDPF G G++ A L +IG E+ +Y +IA RIA +
Sbjct: 234 MLVLDPFMGIGSTALAAIALGADYIGFEIDPEYREIAESRIAGARREKEQ 283
>gi|225621478|ref|YP_002722737.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
hyodysenteriae WA1]
gi|225216299|gb|ACN85033.1| DNA methylase N-4/N-6 domain protein [Brachyspira hyodysenteriae
WA1]
Length = 324
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 26/279 (9%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
N N+ + +K I GN+ VL+K+ DL+ DPPYN+ N Y+
Sbjct: 33 NENINEYKKEDIINKTINGNTFDVLKKIEKNISDLMIVDPPYNISKNYHGYKF------- 85
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-------------NIFRI 114
K +Y+ +T W+ + +LK +++V + NI
Sbjct: 86 ------KDIDNLSYEKYTHLWVESIIPILKKEASIYVCCDWKSSLVIGNVLEKYFNIQNR 139
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
T + N+ + ++ + +
Sbjct: 140 ITWQREKGRGAKNNWKNGMEDIWFATVSNKYTFNVDDVKIRRKVIAPYRIEGKPKDWTET 199
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + S + HPTQKPE L+++++++S+ D I DPF GS
Sbjct: 200 EDGNFRDTCPSNFWDDISVPYWSMSENTAHPTQKPEKLIAKLILASSNANDFIFDPFLGS 259
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
GT+ VAKKL R++ GIE + Y A KRI + +
Sbjct: 260 GTTSVVAKKLGRNYSGIEQHKTYCAWAEKRIENAENNKE 298
>gi|297617762|ref|YP_003702921.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
DSM 12680]
gi|297145599|gb|ADI02356.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
DSM 12680]
Length = 264
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 25/274 (9%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ DK+ +++ +L +LP SVD++F DP YN+ + + SF
Sbjct: 7 YLDKVFLMDTMDLLRELPDSSVDMVFGDPDYNVGVKYRGKSYKR--------------SF 52
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ Y + RVLK G L+ I + + + ++D W ++ +
Sbjct: 53 DEYIEWYVELARESLRVLKETGNLFFINYPKQNAYLRVKYLDEACYEVHDYAWVYNSNV- 111
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-------WLIPICSG 191
+RF AH +++ A + Y N D ++RS+ +
Sbjct: 112 GHSPKRFTTAHRSILHARKTKNNDFYKENVAQPYKNPTDRRIRSNLANGSRGRMPYDWFY 171
Query: 192 SERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+ ++N + H Q P+ L ++ S T+PGD++L F GSG+ V K+L R +I
Sbjct: 172 FDLVKNVSREKTYHACQIPQKLSELLIKSCTRPGDVVLILFGGSGSELEVCKRLDRRYIS 231
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
E+ DY + R+ + + GK++
Sbjct: 232 AEVDPDYHRMILHRLE--NGVTEEYRLINRGKKS 263
>gi|218441866|ref|YP_002380195.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
gi|218174594|gb|ACK73327.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
Length = 597
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/309 (23%), Positives = 120/309 (38%), Gaps = 49/309 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
+ NS +W++K+I + + L +P+ VDLI PPY
Sbjct: 6 QQQFNSSQDWQNKVILSDCLQSLRAMPSHLVDLIVTSPPYADSRKKTYG----------- 54
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-------VIGSYHN-IFRIGTMLQNL 121
S + Y + +R+LKP+GT V G HN + ++ LQ
Sbjct: 55 -----GISPDDYVNWFLPISQELKRILKPDGTFILNIKEKVVNGERHNYVIKLILELQKQ 109
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK--AANEDVQ 179
+ + +W K N P RF++A E + + K K Y AN ++
Sbjct: 110 GWLWTEEYIWHKKNCYPGKWPNRFRDAWERCLQFNKQKKFKMYQERVMIPMGDWANSRLK 169
Query: 180 MRSDWL-----------------------IPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
SD + + L + K H P++L S
Sbjct: 170 KLSDTDKIRDHSKVESGFGKNISNWIGRSMAYPTNVLHLATECNNKNHSATFPKSLPSWF 229
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
+ T+ D++LDPF GSGT+ AK+L R +IGIE+K++Y ++A I ++
Sbjct: 230 IKLFTETSDLVLDPFLGSGTTCIAAKELGRHYIGIEIKKEYYELAVANIEKAVFNIEGKI 289
Query: 277 TVLTGKRTE 285
+ ++ E
Sbjct: 290 FDINYEKKE 298
>gi|318056937|ref|ZP_07975660.1| DNA methylase [Streptomyces sp. SA3_actG]
gi|318075574|ref|ZP_07982906.1| DNA methylase [Streptomyces sp. SA3_actF]
Length = 248
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/268 (20%), Positives = 94/268 (35%), Gaps = 33/268 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV---------TDSW 72
+ +G+++S+L+ LP +SV + DPPYN R +
Sbjct: 4 TLHRGDALSILKNLPDESVHAVITDPPYNSGGRTSAERTSRTARAKYVTGNARHTLRTFP 63
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ AY A+ L C R + V + LQ + + W
Sbjct: 64 GENRDQRAYRAWLTDLLTQCYRASVEHAVACVFTDWRQEPTTTDALQMAGWTWQGTMPWI 123
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K P G F+ + E ++W G
Sbjct: 124 KPASRPRRGG--FKQSSEFIVWGVKGS---------------------LDTTRDLYLPGD 160
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+++H TQKP ++ ++ + ++LDPF GSGT+G A + R F+GIE
Sbjct: 161 YTASQPRKDRIHITQKPIDVMRTLVRAC-PEDGVVLDPFTGSGTTGVAALREGRGFVGIE 219
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
+ + Y +A R+A +EL
Sbjct: 220 LSEHYATLAETRMARELRQDEVELAGPE 247
>gi|78046666|ref|YP_362841.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035096|emb|CAJ22741.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|82504508|gb|ABB80542.1| XveII methyltransferase [Xanthomonas euvesicatoria]
Length = 299
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/282 (24%), Positives = 109/282 (38%), Gaps = 56/282 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ G++ VL + KS PPY + V + EAY
Sbjct: 27 RLVVGDARKVLAGMADKSFQCCITSPPYWGLRDY-----------GVDGQIGAEPTLEAY 75
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
A RR L+ +GTLW+ IG
Sbjct: 76 IEDLVALFREVRRTLRDDGTLWLNIGDGFTSGGRTWRAPDKKNKGRAMEYRAPTPDGLKP 135
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+R+ LQ +++ DI+W+K N P R +HE + + ++ Y
Sbjct: 136 KDLIGVPWRLAIALQADGWYLRADIIWQKPNCQPESVKDRPTRSHEYVFLLTK---SERY 192
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
+N DA+K D + + +E H P L+ + + +K
Sbjct: 193 YYNSDAVKELTADGKHTKNRRSVWAINTE-----PYGGNHFAVFPTELVRLCMEAGSKKE 247
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+++LDPFFGSGT G VA+ R F+GIE+ DY ++A KR+A
Sbjct: 248 EVVLDPFFGSGTVGQVARDNGRKFVGIELSPDYAELARKRLA 289
>gi|163816177|ref|ZP_02207545.1| hypothetical protein COPEUT_02361 [Coprococcus eutactus ATCC 27759]
gi|158448597|gb|EDP25592.1| hypothetical protein COPEUT_02361 [Coprococcus eutactus ATCC 27759]
Length = 237
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/250 (26%), Positives = 111/250 (44%), Gaps = 25/250 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFS-SF 78
K+ N++ +++LP S+DLI DPPYNL G ++ + ++ WD +
Sbjct: 10 KLFNENNLDFMKRLPDSSIDLILTDPPYNLSQFSRGNIHLNNGKTINNKIAEWDSIPLNP 69
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
Y R++KP G +++ SY +G N ++ P
Sbjct: 70 NDYIEPFT-------RIIKPTGNIFIFTSY---SLLGKWYDAFNPLFSTFQIFVWHKTTP 119
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+ N+ KG+T+N+ + QM + + P C E++ +
Sbjct: 120 TQS--VYHNSFLNSCELVVCLWNKGHTWNFSSQD------QMHNFFECPSCMFPEKIISP 171
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPTQKP L+ +L+ S+ P DII DPF G GT+G A K R FIGI++ + Y+
Sbjct: 172 K----HPTQKPLELIEHLLLISSNPNDIIFDPFMGVGTTGEAALKNNRRFIGIDIDEKYV 227
Query: 259 DIATKRIASV 268
+ KR++
Sbjct: 228 KASLKRLSIY 237
>gi|171316523|ref|ZP_02905740.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
gi|171098357|gb|EDT43162.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
Length = 249
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 32/258 (12%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVT 69
+ +++ + +++SV+ +P VDL+F DPPY+ R +
Sbjct: 8 DLINRVHQADALSVMRAMPDACVDLVFTDPPYSSGGTTSASRSQAPSSKYIGGDVKTVYP 67
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
+ ++ + WL RV + L + + + +Q F
Sbjct: 68 EFQHDTKDQRSWTFWCMTWLAEAYRVCRNEAHLACFVDWRQLPSLTDAIQAAGFTWRGVA 127
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
VW K++ R F E L+WA+ + DV + +
Sbjct: 128 VWDKTSGRTRPRMGGFAQQTEFLVWATKGAVRRA-------------DVYLPGVF----- 169
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
SERL K H T+KP L ++ + G ++LDPF GSGT A AK+ ++I
Sbjct: 170 --SERL---SHPKRHMTEKPAQLAREVVRLA-PAGGVVLDPFAGSGTFLAAAKEAGLNWI 223
Query: 250 GIEMKQDYIDIATKRIAS 267
G E++ Y +AT R+A
Sbjct: 224 GCELEPTYHQVATARLAE 241
>gi|294495895|ref|YP_003542388.1| DNA methylase N-4/N-6 domain protein [Methanohalophilus mahii DSM
5219]
gi|292666894|gb|ADE36743.1| DNA methylase N-4/N-6 domain protein [Methanohalophilus mahii DSM
5219]
Length = 336
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/283 (19%), Positives = 116/283 (40%), Gaps = 20/283 (7%)
Query: 21 DKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWDKFS 76
+ + I+ +P +SVDLI DPPY ++ + R ++ +VD +
Sbjct: 9 NVFYNEDCITGAATHIPDESVDLIITDPPYGIKGDKLHQHYNRDENFVVDGYVEI----- 63
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
Y F+ AW+ R+LKP G+++++ Y N++ I L N +N I+W+ +
Sbjct: 64 PEAKYADFSLAWIKEAERILKPGGSIYIVSGYTNLYHILHALYQTNLEEINHIIWKYNFG 123
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYT--FNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + ++ ++H +++ + K++ + Y + + + + +
Sbjct: 124 V--YTKTKYVSSHYHILYYQKAGKSRTFNLESRYGTCEKTEDGRSLNYRDREDVWIINRE 181
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ G+ + + P LL +I+ S+ GD++ D F G ++ VA L R G E+
Sbjct: 182 YK--PGKVKNKNELPHKLLKKIIQYSSNEGDLVCDMFLGGFSTPTVAIGLNRRCTGFEIS 239
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
+ R + + + + L +G
Sbjct: 240 E-----TMFRAKTREIDQSNVIKPGFMVPELREPVIKNLENQG 277
>gi|260587163|ref|ZP_05853076.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
gi|283798265|ref|ZP_06347418.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
gi|260542358|gb|EEX22927.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
gi|291074045|gb|EFE11409.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
Length = 296
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/300 (23%), Positives = 108/300 (36%), Gaps = 64/300 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I++G+++ L KLP K + PPY + D SS E Y
Sbjct: 2 ILQGDALEELRKLPDKCCSVCVTSPPYYNARDY-----------GAADQLGTESSPEEYT 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY---HNI--------------FRIGTMLQNLNFWI 125
RVLK +GTLW+ +I + + L++ +++
Sbjct: 51 RKLVEAFREVARVLKDDGTLWLNIGDSYARHIEDGGIKRKDLIGIPWLLALALRSDGWYL 110
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---------------------------- 157
DI+W K N MP R +HE + S
Sbjct: 111 RADIIWNKPNAMPESAKDRPARSHEYVFLLSKAAAYYYDAEAVKELAVGYDPKKPGRKRG 170
Query: 158 ----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER----LRNKDGEKLHPTQKP 209
YT + +A D + R + + + H + P
Sbjct: 171 NAKTFRGGTAYTHDQAKANSAEVDRGSHGLQRNETGKRNRRDVWTIATRPYKGAHLSTFP 230
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E L +++ +KPGD +LDPF GSGT+GA A K R++IGIE+ D I +R+A
Sbjct: 231 EELAKICILAGSKPGDTVLDPFSGSGTTGAAALKEGRNYIGIEINPDTCKIQEQRLAEAA 290
>gi|210611258|ref|ZP_03288813.1| hypothetical protein CLONEX_01003 [Clostridium nexile DSM 1787]
gi|210152022|gb|EEA83029.1| hypothetical protein CLONEX_01003 [Clostridium nexile DSM 1787]
Length = 327
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/323 (21%), Positives = 108/323 (33%), Gaps = 91/323 (28%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I G+ + VL+ LP +SV PPY + V + ++ +
Sbjct: 15 LDHIYTGDCLEVLKTLPDESVHCCITSPPYYALRDY-----------GVDGQIGREATPK 63
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
Y + RRVL+ +GTLW+ S
Sbjct: 64 EYISRLTEVFTEVRRVLRSDGTLWLNISDTYAGKGNQGSYVDAKNPKGRNGQAVALNYKV 123
Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+ + L++ +++ NDI+W K NPMP R +E + S +
Sbjct: 124 EGCKPKDMIGIPWMLAFSLRDSGWYLRNDIIWMKENPMPESVKDRCARCYEHIFLFSKAR 183
Query: 160 KAK-------------------------------------GYTFNYDALKAANEDVQMRS 182
K T N A D +
Sbjct: 184 KYFFDYKAISEPIAPGTANRLKRGVKGSNKYGEPIPGQAKPQTINLCREHGAIPDEMINP 243
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ K G H P L+ L++ ++LDPF GSGT+G VAK
Sbjct: 244 LRNKRDVWIINTVPFKGG---HYAAYPPKLVETCLLAGCPKDGVVLDPFMGSGTTGMVAK 300
Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
+L R ++GIE+K +Y ++A RI
Sbjct: 301 QLDRHYVGIELKPEYKELAEARI 323
>gi|209543157|ref|YP_002275386.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530834|gb|ACI50771.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 225
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 41/251 (16%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++++ I+ G+S+ ++ +LP +VD I DPPY + G+ R + +A
Sbjct: 9 DFRNTILNGDSVQLMRRLPRNAVDFILTDPPYLVNYQGRDGRKVRNDDNA---------- 58
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ R RVLK G ++ I + F ++ IV+RKS
Sbjct: 59 -----RWLRPAFNQMHRVLKWGGFAVSFYGWNRIDLFADAWKAAGFRMVGHIVFRKSYSS 113
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
R + HE+ + D L
Sbjct: 114 ---SSRFLRYEHESAYLLAKGNVTPPAKPIPDVLDM-----------------------P 147
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G KLHPTQKP A L ++ + G ++LDPF GSG+S A+ L R ++G+E+ ++
Sbjct: 148 YSGNKLHPTQKPVAALLPLVEAFCPVGGLVLDPFAGSGSSLVAAQHLGRDWLGMELDPEH 207
Query: 258 IDIATKRIASV 268
AT+R+A
Sbjct: 208 AATATRRLAWH 218
>gi|78356347|ref|YP_387796.1| adenine specific DNA methyltransferase [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78218752|gb|ABB38101.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 247
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/262 (22%), Positives = 96/262 (36%), Gaps = 33/262 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL--NGQLYRPDHSLVDAVT------DSWD 73
+ +G ++S++ +P +SVD I DPPY+ GQ RP +
Sbjct: 8 TLHRGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPPGVKYQNSDARRRHAEFHG 67
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + W+ C RV K + V + + + +Q + +VW K
Sbjct: 68 DNRDQRSFTLWASLWIAECYRVAKAGASCMVFTDWRQLPAMTDAMQIGGWTWRGIVVWDK 127
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ P + + + + M G
Sbjct: 128 PSARPIL---------------------GEFRRQCEYVVFGVKGRLM--PAHRRCLPGVY 164
Query: 194 RLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
R ++ H T+KP L+ +L T PG +LDPF GS T+GA K R+FIGIE
Sbjct: 165 RHSIIAHQKRRHMTEKPMPLIHDLLE-VTPPGCTVLDPFMGSATTGAACLKTNRNFIGIE 223
Query: 253 MKQDYIDIATKRIASVQPLGNI 274
+ +Y A +R+ V
Sbjct: 224 LSPEYFQSACERLELVANPSTE 245
>gi|311111790|ref|YP_003983012.1| adenine specific DNA methylase [Rothia dentocariosa ATCC 17931]
gi|310943284|gb|ADP39578.1| adenine specific DNA methylase [Rothia dentocariosa ATCC 17931]
Length = 413
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/293 (21%), Positives = 117/293 (39%), Gaps = 38/293 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF------ 75
+++ ++++ L +LP+ S +I+ DPP+N Q R + A + K
Sbjct: 31 LVVQADNLAYLSELPSASFTVIYIDPPFNTGKT-QTRRTLKTAPAADGEEQGKGNGNRTG 89
Query: 76 -----------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--IGT 116
+FE Y AF + R+L +GTL++ + + +
Sbjct: 90 FQGKSYTSALQTLASYHDAFEDYWAFLEPRIRQAHRLLTEDGTLYLHLDWREVHYAKVMC 149
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--- 173
+ +N+I+W + + + H+ ++ + Y FN DA+
Sbjct: 150 DMIFGRDCFINEIIWAYDYGAKSTKR--WPTKHDNILMYVK--NPQEYYFNADAVDREPY 205
Query: 174 -----ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
E+ R + + + +PTQKP LL R++ +S++PGD +L
Sbjct: 206 MAPGLVTEEKAARGKLPTDVWWHTIVSPTGKEKTGYPTQKPLGLLKRMIAASSRPGDWVL 265
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
D F GSGT+GA A L R F+ ++ I++ KR+ V G
Sbjct: 266 DFFAGSGTTGAAAAALGRRFVCVDQNPPAIEVMAKRLNVDAESFADYRGVPRG 318
>gi|162329641|ref|YP_469489.2| DNA-methyltransferase protein (hemagglutinin-associated protein)
[Rhizobium etli CFN 42]
Length = 214
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 41/247 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ I+ G+ ++++++L SVD I DPPY ++ + R + +AV
Sbjct: 5 RNTILYGDCMTLMQRLQGGSVDFILTDPPYLVRYRDRRGRTVANDNNAV----------- 53
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ + RVLKP ++++ R + F ++ +V+ KS
Sbjct: 54 ----WLKPAFAEMHRVLKPGRLAVSFYGWNHVDRFMEAWRKAGFRVVGHLVFVKSYASSQ 109
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
R + HE + A D L +
Sbjct: 110 ---RFVRYHHEQAYVLAKGDAAPPAQPIADVLPW-----------------------DYT 143
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G ++HPTQKP L +I+ + +KPG+++LDPF GSG++ A + R ++G+E++ +
Sbjct: 144 GNRMHPTQKPLRPLEQIIRAFSKPGELVLDPFCGSGSTLLAAARSGRDYLGMELEHRHQL 203
Query: 260 IATKRIA 266
A+ R+
Sbjct: 204 TASLRVH 210
>gi|319641241|ref|ZP_07995940.1| hypothetical protein HMPREF9011_01537 [Bacteroides sp. 3_1_40A]
gi|145308108|gb|ABP57294.1| hypothetical protein bst021 [Bacteroides uniformis]
gi|317387114|gb|EFV67994.1| hypothetical protein HMPREF9011_01537 [Bacteroides sp. 3_1_40A]
Length = 259
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 65/267 (24%), Positives = 95/267 (35%), Gaps = 39/267 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
DKI + + + ++P SVD I AD PY + L R + S WD+
Sbjct: 5 DKIYNMDCLEGMSRMPEGSVDAIIADLPYGV-----LNRGNRSAC------WDRQIPL-- 51
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
RR++KP+ + + IF ML W N + +
Sbjct: 52 -----GPLWEQYRRIIKPDSPIILFA--QGIFSAHLMLSQPGIWRYNLVWQKDRVTGHLN 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL----- 195
R HE ++ + N M C G +L
Sbjct: 105 ANRMPLRQHEDILVFYMKQPVYHPQMTPCPPERRNHGRSMTEGSFTNRCYGEMKLVPVRM 164
Query: 196 --------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+K G HPTQKP AL+ ++ + T GD +LD GSGT+ A
Sbjct: 165 ADNKYPTSVIFIPKEHKTGAFYHPTQKPVALVEYLIRTYTDEGDTVLDNCIGSGTTAIAA 224
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
+ R +IG E ++Y DIA RI
Sbjct: 225 IRSGRHYIGFETVKEYCDIAELRIREE 251
>gi|325996643|gb|ADZ52048.1| type IIS restriction enzyme M1 protein [Helicobacter pylori 2018]
gi|325998232|gb|ADZ50440.1| type IIS restriction enzyme M1 protein [Helicobacter pylori 2017]
Length = 258
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 70/263 (26%), Positives = 107/263 (40%), Gaps = 40/263 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + + L+KL KSVDL DPPYNL++ SWD F + E
Sbjct: 1 MNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDE 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ F+ AW+ +K G+ ++ + N L + LN I W K + N
Sbjct: 45 EFLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLCHKKAHFLNFITWVKKDGFAN 104
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYT-----------------------FNYDALKAANE 176
+ R +A E++++ S K + N +
Sbjct: 105 AKKRY-NHAQESILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPK 163
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
W I E+ K + HP+ KP+AL+ R++ +S+ D+ILD F GSG
Sbjct: 164 GKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGSGM 223
Query: 237 SGAVAKKLRRSFIGIEMKQDYID 259
VAK L R+FIG E Y+
Sbjct: 224 ISLVAKSLGRNFIGCETHAGYVH 246
>gi|119386071|ref|YP_917126.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119376666|gb|ABL71430.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
PD1222]
Length = 225
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/256 (24%), Positives = 98/256 (38%), Gaps = 41/256 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ +I G+ I V++ SVD I DPPY V D + + +
Sbjct: 9 RNLVINGDCIEVMQAFGTGSVDFILTDPPY---------------VTRFRDRQGRTVAND 53
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ R RVLK G ++ + + F I+ +V+RK
Sbjct: 54 DNARWLRPAFAQMHRVLKQGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRYA--- 110
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
R + HE + D L
Sbjct: 111 SSARFLRYEHEQAYLLAKGDPVLPARPVPDVLDF-----------------------PYT 147
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G KLHPTQKP A L R++ + T+PGD++LDP GSG++ A A L R ++G+E+ +
Sbjct: 148 GNKLHPTQKPVAALRRLIGAFTQPGDLVLDPLSGSGSTLAAAHLLGRDWLGVELDVAHYQ 207
Query: 260 IATKRIASVQPLGNIE 275
A KR+A++Q
Sbjct: 208 TAGKRMAALQQRDRKA 223
>gi|21225176|ref|NP_630955.1| DNA methylase [Streptomyces coelicolor A3(2)]
gi|6941940|emb|CAB72390.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
Length = 251
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 31/252 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---------DSWD 73
+ +G++++VL LP VD + DPPYN R S T D
Sbjct: 5 LHQGDALAVLSGLPDGCVDSVITDPPYNSGGRTAKERTSRSAKQKYTSADVKNDLADFTG 64
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +Y + + R+ K GT + + + +Q + + W K
Sbjct: 65 ENMDQRSYGFWLTQIMTEAHRLTKTGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHK 124
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P RF E ++WAS P + + V + + SGS+
Sbjct: 125 PQARPQ--KGRFTQNCEFIVWASKGP-----------IDGSRNPVYLPGMYSASQPSGSQ 171
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R H TQKP ++ ++ + G +LD GSG++G A R FIG+E
Sbjct: 172 R--------QHITQKPVEVMRELVKI-SPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEK 222
Query: 254 KQDYIDIATKRI 265
+ Y IA R+
Sbjct: 223 TEHYASIAADRL 234
>gi|215481968|ref|YP_002324150.1| Modification methylase CfrBI [Acinetobacter baumannii AB307-0294]
gi|213986000|gb|ACJ56299.1| Modification methylase CfrBI [Acinetobacter baumannii AB307-0294]
Length = 384
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 67/289 (23%), Positives = 108/289 (37%), Gaps = 47/289 (16%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
+ + + ++ E ++ +I+GNSI L+ LP SV+LIF PPY
Sbjct: 101 KLTKKEITLSELENMVIEGNSIESLKYLPEDSVNLIFTSPPYY----------------N 144
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-------------- 113
+ ++S++E Y R + C RVL + S I R
Sbjct: 145 AKPEYSEYSTYEEYLELMRQVIKGCHRVLSEGRFFVLNISPVLIRRASRSESSKRIAVPF 204
Query: 114 -IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ F ++DI W K GR + A + Y Y
Sbjct: 205 DFHKLFIEEGFEFIDDIHWVKPEGAGWAFGRGRRFAADRNPLQYKPVPVTEYILVYRKKT 264
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDG-------------EKLHPTQKPEALLSRILVS 219
+ + + P E + +DG K HP P L +++
Sbjct: 265 ---DRLIDWNIRKHPDQKAVEESKVEDGYETTNLWRINPSRSKDHPATFPVELAEKVIKY 321
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ D++LDPF GSGT+G A L R F+ +E++ YI + KR +S
Sbjct: 322 YSFKNDVVLDPFGGSGTTGIAALNLNRRFVMMELESKYIQVMKKRFSSF 370
>gi|332654727|ref|ZP_08420470.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
gi|332516691|gb|EGJ46297.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
Length = 350
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/320 (19%), Positives = 108/320 (33%), Gaps = 85/320 (26%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D I G+ + +L+ LP SV PPY + + + ++ +
Sbjct: 38 LDIIHTGDCLEILKALPDDSVHCCVTSPPYYALRDY-----------GMEAQIGRETTPK 86
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
Y + RRVL+P+GTLW+ S
Sbjct: 87 EYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFIDPKNPNGRNGQAVALNNKV 146
Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+ + L++ +++ NDI+W K NPMP R +E + S S
Sbjct: 147 EGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRLSRCYEHIFLFSKSK 206
Query: 160 KAK----------------------------------GYTFNYDALKAANEDVQMRSDWL 185
K + +++
Sbjct: 207 KYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEIKDCDINP 266
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ + H P L+ L++ G I+LDPF GSGT+G VA ++
Sbjct: 267 LRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTTGMVASQMG 326
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R F+G+E+ +Y ++A KRI
Sbjct: 327 RHFVGVELNPEYTELAYKRI 346
>gi|317014760|gb|ADU82196.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
Gambia94/24]
Length = 260
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 70/264 (26%), Positives = 106/264 (40%), Gaps = 40/264 (15%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+KL KSVDL DPPYNL++ SWD F +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKND 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E + F+ AW+ +K G+ ++ + N L LN I W K +
Sbjct: 46 EEFLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLCQKKAHFLNFITWVKKDGFA 105
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT-----------------------FNYDALKAAN 175
N + R +A E++++ S K + N
Sbjct: 106 NAKKRY-NHAQESILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNP 164
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ W I E+ K + HP+ KP+AL+ R++ +S+ D+ILD F GSG
Sbjct: 165 KGKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGSG 224
Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
VAK L R+FIG E Y+
Sbjct: 225 MISLVAKSLGRNFIGCETHAGYVH 248
>gi|46581137|ref|YP_011945.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450558|gb|AAS97205.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|311234813|gb|ADP87667.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
Length = 249
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/260 (22%), Positives = 95/260 (36%), Gaps = 32/260 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTDSWD 73
+I+G +++VL LP +VD + DPPY+ Q++ +
Sbjct: 10 TLIQGEALTVLRTLPTGAVDTVLTDPPYSSGGITMAARQVDPAQKYQQSNTKRTYPAMLG 69
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL C RV K + V + + + LQ + + W K
Sbjct: 70 DNRDQRSFTLWATLWLSECWRVAKDGARIMVFTDWRQLPAMTDALQAAGWMWRGVVTWHK 129
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ P+ F DA + G
Sbjct: 130 PSARPSLG-----------------------DFKRDAEYVITGSKGKPTMHTRTCPPGVY 166
Query: 194 RLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
R K H T+KP ALL +L V++ P ++LDPF GSG++G R F+GIE
Sbjct: 167 RHSVNAARKTHLTEKPVALLEDLLAVTAPGPDALVLDPFAGSGSTGVACLNTGRRFVGIE 226
Query: 253 MKQDYIDIATKRIASVQPLG 272
+ +Y A+ R+A V
Sbjct: 227 LSAEYHARASNRLAEVAQNM 246
>gi|71275466|ref|ZP_00651752.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71900970|ref|ZP_00683083.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|71163766|gb|EAO13482.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71729275|gb|EAO31393.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
Length = 243
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 30/252 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQL-----NGQLYRPD--HSLVDAVTDSWD-KF 75
+G+++ +L + + SVD + DPPY + R +S + +D F
Sbjct: 12 HEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTRTKYLNSTAKHIAPDFDCDF 71
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ A++ WL CRRV +P G L V + + + +Q+ + +VW K+
Sbjct: 72 RDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKTP 131
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
GR A E ++WAS M G
Sbjct: 132 ACRPQLGRFRSQA-EFIVWASCGL--------------------MNPKAHPVTPVGVFAT 170
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
EK H KP AL+ ++ P +LDPF GSGT+G A + FIG+E+
Sbjct: 171 GTAPREKRHQVGKPLALMEHLIKIV-PPTSTVLDPFAGSGTTGVAALRAGHQFIGMEISP 229
Query: 256 DYIDIATKRIAS 267
Y D+A +R+A
Sbjct: 230 WYCDVAKQRLAD 241
>gi|159028624|emb|CAO90627.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 317
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/301 (20%), Positives = 111/301 (36%), Gaps = 56/301 (18%)
Query: 5 NSLAINENQNSIFEW-----KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
N L + S+ ++ + + +G+S + ++ +P SV LI PPYNL + +
Sbjct: 2 NQLPLFSQSKSVRDFYQPDAEIILYQGDSNNFIKTIPDNSVSLIITSPPYNLGKDYEKK- 60
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNI 111
S + Y L+ R+L+ NG++ Y
Sbjct: 61 ----------------ISLDTYLETQTKILVEFPRILQDNGSICWQVGNFVQEGEVYPLD 104
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK----------- 160
+ + + F++ N IVW + + +RF +ET++W + + K
Sbjct: 105 IFYYQLFKQMGFFLRNRIVWHFGHGL--HTSKRFSGRYETILWLTKTDKYIFNLDPVRIP 162
Query: 161 ------AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG-------EKLHPTQ 207
N W E L + + +HP Q
Sbjct: 163 AKYPGKRHFKGKNIGKPSGNPLGKNPSDVWEFLAQEWDELLWDIPNVKSNHPEKTIHPCQ 222
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P L+ R +++ T GD + DPF G GTS + R +G E + +Y+ IA +RIA+
Sbjct: 223 YPIELVERCVLALTNEGDWVFDPFAGVGTSLIASIMHNRRVMGSEKEAEYVKIARERIAA 282
Query: 268 V 268
Sbjct: 283 Y 283
>gi|86151256|ref|ZP_01069471.1| DNA methylase [Campylobacter jejuni subsp. jejuni 260.94]
gi|85841603|gb|EAQ58850.1| DNA methylase [Campylobacter jejuni subsp. jejuni 260.94]
Length = 236
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 23/248 (9%)
Query: 22 KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ + + + + +++ D I DPPYN+ + WDK
Sbjct: 6 RLFNDDCLQIALQFKKENIIFDSIITDPPYNISKENNFHTLKSKRQGVDFGEWDKEFD-- 63
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
T W+ ++ NG++ + SY + I L F + + W K+NPMP
Sbjct: 64 -----TCEWIEYFAPLVTKNGSMIIFCSYLYLSFIIKKLGICGFITKDILRWEKTNPMPR 118
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
RR+ E IWA + + ++ ++ + + SG E
Sbjct: 119 NVNRRYVQDCEFAIWAVKNGAKWTFNKPIES-------KYLKPCFKTSLVSGEE------ 165
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ HPTQK L+ I+ T D+I DPF GSGT G + L R FIGIE+ ++Y
Sbjct: 166 -KTSHPTQKSLKLMREIIQIHTNENDLICDPFMGSGTMGVASVNLGRKFIGIELDKEYFQ 224
Query: 260 IATKRIAS 267
IA RI +
Sbjct: 225 IAKDRIQN 232
>gi|329940535|ref|ZP_08289816.1| DNA methylase [Streptomyces griseoaurantiacus M045]
gi|329300596|gb|EGG44493.1| DNA methylase [Streptomyces griseoaurantiacus M045]
Length = 251
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 31/252 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---------DSWD 73
+ +G++++VL LP VD + DPPYN R S T D
Sbjct: 5 LHQGDALAVLSGLPDGCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADAKNDLADFTG 64
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +Y + + R+ K GT + + + +Q + + W K
Sbjct: 65 ENMDQRSYAFWLTQIMTEAHRLTKTGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHK 124
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P RF E ++WAS P + + V + + SG++
Sbjct: 125 PQARPQ--KGRFTQNCEFIVWASKGP-----------IDGSRNPVYLPGMYSASQPSGAQ 171
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R H TQKP ++ ++ + G +LD GSG++G A R FIG+E
Sbjct: 172 R--------RHITQKPVEVMRELVKI-SPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEK 222
Query: 254 KQDYIDIATKRI 265
+ Y IA R+
Sbjct: 223 TEHYASIAADRL 234
>gi|147677091|ref|YP_001211306.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
gi|146273188|dbj|BAF58937.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
Length = 315
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 63/285 (22%), Positives = 108/285 (37%), Gaps = 42/285 (14%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ ++ + ENQ ++ D I+ +E+LP SV L+ PPYN +
Sbjct: 51 LPKEKKMPYVENQ-VPEKFLDNILCKTC-ENMEELPDSSVHLMVTSPPYNAGKDY----- 103
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------YHNIFRI 114
DK + Y F + RVL P G + + Y I
Sbjct: 104 ------------DKNLTLSQYRDFLKRVWKEVYRVLVPGGRACINVANLGRKPYIPIHTC 151
Query: 115 GTM-LQNLNFWILNDIVWRK--SNPMPNFRGRRFQNA-------HETLIWASPSPKAKGY 164
T +Q+L F + +I+W K S G A HE ++ S +
Sbjct: 152 ITEDMQDLGFLMRGEIIWNKASSASPSTAWGSWLSAANPTLRDVHEYILVFSKDAFTRKN 211
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
+ ++ + +E+ + + HP P L R++ T G
Sbjct: 212 PYCRESTITKEQ---FLEYTKSVWTFPAEQAK----KIGHPAPFPVELPYRLIQLYTFKG 264
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+++LDPF GSG + A K R ++G E+ +Y+ +A +RI +
Sbjct: 265 EVVLDPFLGSGQTAIAALKAGRRYVGYEIDGNYVGLAKRRIDVFK 309
>gi|257439315|ref|ZP_05615070.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
gi|257198190|gb|EEU96474.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
Length = 296
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 69/300 (23%), Positives = 106/300 (35%), Gaps = 64/300 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I++G+++ L KLP K + PPY + D SS E Y
Sbjct: 2 ILQGDALEELRKLPDKCCSVCVTSPPYYNARDY-----------GAADQLGTESSPEEYT 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY---HNI--------------FRIGTMLQNLNFWI 125
RVLK +GTLW+ +I + + L++ +++
Sbjct: 51 RKLVEAFREVARVLKDDGTLWLNIGDSYARHIEDGGIKRKDLIGIPWLLALALRSDGWYL 110
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---------------------------- 157
DI+W K N MP R +HE + S
Sbjct: 111 RADIIWNKPNVMPESAKDRPARSHEYVFLLSKAAAYYYDAEAVKELAVGYDPKKPGRKRG 170
Query: 158 ----SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER----LRNKDGEKLHPTQKP 209
YT + A D + R + + + H + P
Sbjct: 171 NAKTFRGGTAYTHDQAKANNAEVDRGSHGLQRNETGKRNRRDVWTIATRPYKGAHLSTFP 230
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E L +++ +KPGD +LDPF GSGT+GA A K R++IGIE+ D I +R+
Sbjct: 231 EELAKICILAGSKPGDTVLDPFSGSGTTGAAALKEGRNYIGIEINPDTCKIQEQRLTEAA 290
>gi|290957744|ref|YP_003488926.1| DNA methylase [Streptomyces scabiei 87.22]
gi|260647270|emb|CBG70375.1| putative DNA methylase [Streptomyces scabiei 87.22]
Length = 251
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 31/252 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---------DSWD 73
+ +G+++SVL LP VD + DPPYN R S T D
Sbjct: 5 LHQGDALSVLAGLPDGCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADSKNDLADFTG 64
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +Y + + R+ K GT + + + +Q + + W K
Sbjct: 65 ENMDQRSYSFWLTQIMTEAHRLTKSGGTALLFTDWRQLPTTTDAIQAAGWLWRGVLAWHK 124
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P F E ++WAS P + + V + + SG++
Sbjct: 125 PQARPQRGR--FTQNCEFIVWASKGP-----------IDGSRNPVYLPGMYSASQPSGAK 171
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R H TQKP ++ ++ + G +LD GSG++G A R FIG+E
Sbjct: 172 R--------QHITQKPVEVMRELVKI-SPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEK 222
Query: 254 KQDYIDIATKRI 265
+ Y IA R+
Sbjct: 223 TEHYASIAEARL 234
>gi|166364266|ref|YP_001656539.1| putative adenine-specific DNA-methyltransferase [Microcystis
aeruginosa NIES-843]
gi|166086639|dbj|BAG01347.1| putative adenine-specific DNA-methyltransferase [Microcystis
aeruginosa NIES-843]
Length = 317
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 62/301 (20%), Positives = 110/301 (36%), Gaps = 56/301 (18%)
Query: 5 NSLAINENQNSIFEW-----KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
N L + S+ ++ + + +G+S + ++ +P SV LI PPYNL + +
Sbjct: 2 NQLPLFSQSKSVRDFYQPDAEIILYQGDSNNFIKTIPDNSVSLIITSPPYNLGKDYEKK- 60
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNI 111
S + Y + R+L+ NG++ Y
Sbjct: 61 ----------------ISLDTYLETQTKIMREFSRILQDNGSICWQVGNFVQEGEVYPLD 104
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK----------- 160
+ + + F++ N IVW + + +RF +ET++W + + K
Sbjct: 105 IFYYQLFKQMGFFLRNRIVWHFGHGL--HTSKRFSGRYETILWLTKTDKYIFNLDPVRIP 162
Query: 161 ------AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG-------EKLHPTQ 207
N W E L + + +HP Q
Sbjct: 163 AKYPGKRHFKGKNIGKPSGNPLGKNPSDVWEFLAQEWDELLWDIPNVKSNHPEKTIHPCQ 222
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P L+ R +++ T GD + DPF G GTS + R +G E + +Y+ IA +RIA+
Sbjct: 223 YPIELVERCVLALTNEGDWVFDPFAGVGTSLIASIMHNRRVMGSEKEAEYVKIAQERIAA 282
Query: 268 V 268
Sbjct: 283 Y 283
>gi|206901346|ref|YP_002250136.1| m4C-methyltransferase [Dictyoglomus thermophilum H-6-12]
gi|206740449|gb|ACI19507.1| m4C-methyltransferase [Dictyoglomus thermophilum H-6-12]
Length = 309
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 58/289 (20%), Positives = 103/289 (35%), Gaps = 41/289 (14%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ E ++I S +E++P S+ L+ PPYN+
Sbjct: 46 QESEIPKEALNQIFCK-SSEKMEEIPDNSIHLMVTSPPYNVGKEY--------------- 89
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------IFRIGTMLQNLNF 123
D+ + + Y F + RVL P G + + + I + + F
Sbjct: 90 --DENLTLKEYREFLKRVWKEVYRVLVPGGRVCINIANLGRKPYIPLHCYIIEDMLEIGF 147
Query: 124 WILNDIVWRK--SNPMPNFRGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAA 174
+ +I+W K S G A HE ++ S + N +
Sbjct: 148 LMRGEIIWNKASSASPSTAWGSWLSPANPTLRDIHEYILVFSKDTFTRKNLRNRKSTITK 207
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
E ++ ++++ HP P L R + T G+++LDPF GS
Sbjct: 208 EEFLEFTKSVWTFPAESAKKI-------GHPAPFPIELPYRCIQLYTFEGEVVLDPFMGS 260
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
G + A K +R +IG E+ + Y+++A +RI NI +
Sbjct: 261 GQTAIAALKAKRFYIGYEINKVYVNLANRRIREFLSSQNILSLFEETNK 309
>gi|78189365|ref|YP_379703.1| DNA modification methylase-like [Chlorobium chlorochromatii CaD3]
gi|78171564|gb|ABB28660.1| DNA modification methylase-like protein [Chlorobium chlorochromatii
CaD3]
Length = 264
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 42/271 (15%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV---------DA 67
++ + II +S++V+E++P K +D+ PPYNL+ + ++ +
Sbjct: 5 DDYINTIICADSLTVMEQMPDKCIDIAVTSPPYNLKNSTGNGMKANTKSGKWAGNALQNG 64
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
+ D + + Y + L A R+LK +G ++ Y++ +R+ L I+
Sbjct: 65 YSHYNDNIPN-DEYAEWQYNCLKAMYRLLKDDGAIF----YNHKWRVQNGLIQDRTDIIR 119
Query: 128 D-----IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
D I+ K NF F +E + + + ++
Sbjct: 120 DLPVRQIIIWKRKGGINFNPGYFLPTYEVIYLIAKPSFK----------------LLPKA 163
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + ++ ++N HP P AL+ RI+ S++ IILDPF GSGT+ A
Sbjct: 164 NAYGDVWEFTQEMKNN-----HPAPFPVALIDRIISSTSAQ--IILDPFMGSGTTAVAAL 216
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
+L+R++IGI++ DY ++A +RI ++ P
Sbjct: 217 QLQRNYIGIDISPDYCEMAKERILNLNPAKR 247
>gi|300741895|ref|ZP_07071916.1| adenine specific DNA methylase [Rothia dentocariosa M567]
gi|300381080|gb|EFJ77642.1| adenine specific DNA methylase [Rothia dentocariosa M567]
Length = 402
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 64/293 (21%), Positives = 117/293 (39%), Gaps = 38/293 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF------ 75
+++ ++++ L +LP+ S +I+ DPP+N Q R + A + K
Sbjct: 20 LVVQADNLAYLSELPSASFTVIYIDPPFNTGKT-QTRRTLKTAPAADGEEQGKGNGNRTG 78
Query: 76 -----------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--IGT 116
+FE Y AF + R+L +GTL++ + + +
Sbjct: 79 FQGKSYTSALQTLASYHDAFEDYWAFLEPRIRQAHRLLTEDGTLYLHLDWREVHYAKVMC 138
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--- 173
+ +N+I+W + + + H+ ++ + Y FN DA+
Sbjct: 139 DMIFGRDCFINEIIWAYDYGAKSTKR--WPTKHDNILMYVK--NPQEYYFNADAVDREPY 194
Query: 174 -----ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
E+ R + + + +PTQKP LL R++ +S++PGD +L
Sbjct: 195 MAPGLVTEEKAARGKLPTDVWWHTIVSPTGKEKTGYPTQKPLGLLKRMIAASSRPGDWVL 254
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
D F GSGT+GA A L R F+ ++ I++ KR+ V G
Sbjct: 255 DFFAGSGTTGAAAAALGRKFVCVDQNPPAIEVMAKRLNVDAESFADYRGVPRG 307
>gi|308175023|ref|YP_003921728.1| Modification methylase BamHI; M.BamHI; N [Bacillus
amyloliquefaciens DSM 7]
gi|307607887|emb|CBI44258.1| Modification methylase BamHI; M.BamHI; N [Bacillus
amyloliquefaciens DSM 7]
gi|315000321|emb|CAA38998.2| BamH I methylase [Bacillus amyloliquefaciens]
gi|328554992|gb|AEB25484.1| Modification methylase BamHI; M.BamHI; N [Bacillus
amyloliquefaciens TA208]
gi|328913347|gb|AEB64943.1| Modification methylase BamHI; M.BamHI; N [Bacillus
amyloliquefaciens LL3]
Length = 423
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 76/304 (25%), Positives = 122/304 (40%), Gaps = 39/304 (12%)
Query: 1 MSQKNSLAINENQNSIFEWK-------DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+ KNS+ +NE NSI E K K+ G+ + + +++P ++VD IFADPP+NL
Sbjct: 93 LENKNSVKLNEF-NSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNLDK 151
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ VTD +SF Y + W+ C RVLKP G+L++
Sbjct: 152 EYD---------EGVTDK----NSFSGYLDWYYKWIDECIRVLKPGGSLFIYNIPKWNTY 198
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY----- 168
+ L N I +P N +L++ K K +
Sbjct: 199 LSEYLNRKLN-FRNWITVDMKFGLPIQNRLYPAN--YSLLYYVKGDKPKTFNVQRIPLQT 255
Query: 169 --------DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ + L + S +R+ + + LL RI+ S
Sbjct: 256 CPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLLDRIITMS 315
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
T GD++LDPF GSGT+ AV++ L R +IG E+ +I +R+ + + V
Sbjct: 316 TNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFELGN--CEIIKERLKNKDKDKKLLGKVYE 373
Query: 281 GKRT 284
K
Sbjct: 374 EKNK 377
>gi|295189263|gb|ADF83450.1| putative DNA methylase [Lactobacillus phage LBR48]
Length = 282
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 70/301 (23%), Positives = 107/301 (35%), Gaps = 79/301 (26%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH-SLVDAVTDSWDKFSSFEAYDA 83
KG+ + +++KLP SVD I DPPY +R D AV + WD
Sbjct: 6 KGDCLELMKKLPDNSVDTIITDPPY----EYLNHRLDRIFDEQAVFNEWD---------- 51
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
R++KP G + G + R ML + +I+W K+ F
Sbjct: 52 ----------RIVKPKGLIVFFGRGESFHRWNCMLNGMGRKFKEEIIWEKNVSSTPFTAI 101
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAA----------------------------- 174
+ +++ K K FN +
Sbjct: 102 GRNHETISILGGGKIRKVKVPYFNPEKPNFKKIEMDLKRLSSALKNPKEFSVISNYLKSK 161
Query: 175 -------------------NEDVQMRSDWLIPICSGSERLRNKDGEKL------HPTQKP 209
N S ++ R ++ K HPTQKP
Sbjct: 162 QIAFTEPYKSAHSITVSGKNLKKPYVSLSVMRQVEEGIREKDVINVKFNRLHFEHPTQKP 221
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
AL+ R++ ++ GD ILDPF GSG++G K L R+FIG+E+ +Y + +RI Q
Sbjct: 222 VALMERLMNLTSDEGDTILDPFMGSGSTGIACKNLGRNFIGMEIDDEYFGVTQRRIKQAQ 281
Query: 270 P 270
Sbjct: 282 K 282
>gi|261837492|gb|ACX97258.1| type IIS m6A methylase [Helicobacter pylori 51]
Length = 247
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 70/257 (27%), Positives = 106/257 (41%), Gaps = 40/257 (15%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+KL KSVDL DPPYNL++ SWD F +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKND 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E + F+ AW+ LK G+ ++ + N L + LN I W K +
Sbjct: 46 EEFLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLCHKKVHFLNFITWVKKDGFA 105
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT-----------------------FNYDALKAAN 175
N + R +A E++++ S K + N
Sbjct: 106 NAKKRY-NHAQESILFYSMHKKNYTFNADEIRTTYESTERIKHAQNKGILKNNKRWFPNP 164
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ W I E+ K + HP+ KP+AL+ R++ +S+ D+ILD F GSG
Sbjct: 165 KGKLCLDVWEITSQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224
Query: 236 TSGAVAKKLRRSFIGIE 252
+ VAK L R+FIG E
Sbjct: 225 MTSLVAKSLGRNFIGCE 241
>gi|156741790|ref|YP_001431919.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156233118|gb|ABU57901.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 329
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/281 (20%), Positives = 102/281 (36%), Gaps = 57/281 (20%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ ++++P S+ LI PPYNL + S E Y
Sbjct: 25 VFNGDVSDFIKQIPDNSITLIVTSPPYNLGKAYENR-----------------ISIENYL 67
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ R+LK +G++ Y + + + + N I+WR
Sbjct: 68 RSQSQLINQLYRILKNDGSICWQVGNFVEDGEVYPLDILYYPIFKEIGMNLRNRIIWRFG 127
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMRS 182
+ + +RF +ET++W + + Y FN D+ K N+ +
Sbjct: 128 HGL--HASKRFSGRYETILWFTK---SDKYIFNLDSVRVPSKYPGKRHFKGPNKGKPSGN 182
Query: 183 ---------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
DW + N + +HP Q P L+ R +++ T GD +
Sbjct: 183 PLGKNPSDIWEVLAQDWEEEVWDIPNVKSNHPEKTVHPCQFPIELIERCVLALTNEGDWV 242
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
DP+ G G+S A R +G E DY ++A +RI
Sbjct: 243 FDPYMGVGSSLIAALMHNRRAVGCEKDADYAELARQRIRDY 283
>gi|119358292|ref|YP_912936.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
phaeobacteroides DSM 266]
gi|119355641|gb|ABL66512.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
DSM 266]
Length = 368
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 111/280 (39%), Gaps = 56/280 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I G++ +++ LP + + PPY + V + + Y
Sbjct: 95 QVINGDTRDIIKSLPDNTFRCVVTSPPYWGVRDY-----------GVENQIGAEPDLQDY 143
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-----------------------IGSYHNI------- 111
RRVL+P+GT W+ SY
Sbjct: 144 IKALVEIFSEVRRVLQPDGTFWLNIGNTYTSGGRKWRQEDSKNKGRAMSYRPPTPDGLKK 203
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ + Q +++ NDI+W K N P R AHE L S ++ Y
Sbjct: 204 KDLIGVAWMVAMACQLDGWYLRNDIIWHKPNCQPESVKDRLTVAHEYLFMFSK---SEQY 260
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
FN +A+K + + + +E + H P+ L+ +++ ++
Sbjct: 261 YFNQEAIKESYTNGNGFKNKRTVWSINTE-----SCAEAHFAVFPKNLVRPCILAGSEER 315
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
D+ILDPF+G+GT G V+++L R +GIE+ DY+ I+++R
Sbjct: 316 DLILDPFYGAGTVGIVSQELNRKCVGIEINPDYVYISSRR 355
>gi|85857855|ref|YP_460057.1| DNA modification methylase [Syntrophus aciditrophicus SB]
gi|85720946|gb|ABC75889.1| DNA modification methylase [Syntrophus aciditrophicus SB]
Length = 292
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 68/301 (22%), Positives = 109/301 (36%), Gaps = 49/301 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+S L+ LP SVDLI PPY Q + Y
Sbjct: 7 IYLGDSREQLKLLPDDSVDLIVTSPPYADQRKNTYG----------------GIHPDKYV 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFWILNDIVWRKS 134
+ + RVLKP GT + + + ++ + + +W K
Sbjct: 51 NWFLPISVQLLRVLKPTGTFILNIKEKVVEGERSTYVMELILEMRKQGWLWTEEFIWHKK 110
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------------FNYDALKAANEDVQ 179
N P RF++A E L+ + + K Y N ++ +
Sbjct: 111 NCYPGKWPNRFRDAWERLLQFNKNRKFHMYQEEVMVQMGEWANSRLKNLSETDKIRDNSK 170
Query: 180 MRSDWLIPICSGSERLRNKD----------GEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ S + I + ER + K H PE L + TK D +LD
Sbjct: 171 VGSGFGKNISNWLERDKAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEKDTVLD 230
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
PF GSGT+ VA ++RR+ IGI++ +Y ++ K++ +V+ R E R+
Sbjct: 231 PFMGSGTTLIVANRMRRNSIGIDIVPEYCEMVKKQLKAVELYLLEPKAEYEKTRVEKRIT 290
Query: 290 F 290
Sbjct: 291 I 291
>gi|291541442|emb|CBL14552.1| DNA modification methylase [Ruminococcus bromii L2-63]
gi|291557341|emb|CBL34458.1| DNA modification methylase [Eubacterium siraeum V10Sc8a]
gi|295092168|emb|CBK78275.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
Length = 318
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 68/323 (21%), Positives = 111/323 (34%), Gaps = 91/323 (28%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
DKI G+S+ VL+ LP +VD PPY + + ++ E
Sbjct: 5 MDKIYCGDSLQVLQTLPENAVDCCVTSPPYYALRDY-----------GADGQIGREATPE 53
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------------------- 110
Y + A +RVL P GT W+ +
Sbjct: 54 EYVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAFNHRA 113
Query: 111 -----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+ + L+ +++ + I+W K+NPMP R +E + +
Sbjct: 114 PGCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKTNPMPESTRDRPTRCYEYVFLLTK-- 171
Query: 160 KAKGYTFNYDALKAA--------------NEDVQMRSDWLIPICSGSER----------- 194
+K Y +++ A+ + + R
Sbjct: 172 -SKKYYYDWQAVAEPIAPTTAGRLKSGVSKGNKYNVTVPGQNQPQKINRPREKGAYADEL 230
Query: 195 ------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ N H P L +++ G I+LDPFFGSGT+G VAK
Sbjct: 231 ISPVRSRRNVWQINNVGYHGGHFAAFPPKLAETCILAGCPIGGIVLDPFFGSGTTGMVAK 290
Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
+L R +IGIE+ DY ++A +RI
Sbjct: 291 RLNRRYIGIELNPDYCELAKQRI 313
>gi|270208491|ref|YP_003329265.1| DNA methylase family protein [Klebsiella pneumoniae]
gi|283826853|ref|YP_003377724.1| DNA methylase family protein [Shigella sonnei]
gi|218546527|gb|ACK98916.1| DNA methylase family protein [Klebsiella pneumoniae]
gi|283466745|emb|CBI12406.1| DNA methylase family protein [Shigella sonnei]
Length = 227
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + R ++ V D W + +S
Sbjct: 3 RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + ++ I R + F ++ +V+ K+ +
Sbjct: 57 ---------EMYRVLKKDALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|258593779|emb|CBE70120.1| Methyltransferase [NC10 bacterium 'Dutch sediment']
Length = 298
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 55/262 (20%), Positives = 85/262 (32%), Gaps = 31/262 (11%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I G+S L LP SV LI PPY + + D +E
Sbjct: 1 MHRLINGDSRD-LSFLPDASVHLIVTSPPYW----------NLKRYNENPDQLGHIQEYE 49
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
A+ R+L P G L + + R + + V + N
Sbjct: 50 AFLFELEKVWRHVYRILVPGGRLVCVVGDVCVARRDFGRHLVFPLHADICVVCRRIGFDN 109
Query: 140 FR---GRRFQNAHETLIWASPS---PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ NA + S P D + +
Sbjct: 110 LNPIIWHKIANASYEVENGSKFLGKPYEPNAIIKNDMEFILMQRKPGGYRKPTNQQRDAS 169
Query: 194 RLRNKD--------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
R+R D K HP P L +R++ + GD +LDPF GSGT+
Sbjct: 170 RIRKDDFGQWFQQIWTIPGASTKQHPAPFPLELATRLIRMFSFTGDTVLDPFCGSGTTMI 229
Query: 240 VAKKLRRSFIGIEMKQDYIDIA 261
A + R+ IG+E+ +Y +A
Sbjct: 230 AALRTGRNSIGVEIDPEYCRMA 251
>gi|257457835|ref|ZP_05622994.1| DNA methylase [Treponema vincentii ATCC 35580]
gi|257444548|gb|EEV19632.1| DNA methylase [Treponema vincentii ATCC 35580]
Length = 283
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 66/277 (23%), Positives = 102/277 (36%), Gaps = 41/277 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + I+ L+ LP +DL+ PPYN+ + P E Y
Sbjct: 22 LLYNIDCIAALKILPRNYIDLVLTSPPYNIGKEYEKVLP-----------------IEDY 64
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIF------RIGTMLQNLNFWILNDIVWRKSN 135
++ +WL +LK NG W Y + +L + L +
Sbjct: 65 IDWSSSWLNEIPLILKENGAFWYNLGYVPFKDSARALPLVYLLWDKVKMYLMQEIVWNYG 124
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK---------------AANEDVQM 180
+ + L + YTFN DA++ N +
Sbjct: 125 AGVACKKTLSPRNEKWLWYV---NNKDDYTFNLDAIRDPDVKYPNSKKNGKLRCNTLGKN 181
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
SD S R+ + HP Q P L+ RI + + DI+LDPF GSGT+
Sbjct: 182 PSDVWQIAKVTSGFNRSSEERTNHPAQFPLDLIDRITLGFSNENDILLDPFMGSGTTAIS 241
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
A K RR+ IG E+++DY ++ KRI S + L
Sbjct: 242 ALKNRRNVIGFEIREDYCELQAKRIDSYFLEQSQNLF 278
>gi|218961548|ref|YP_001741323.1| Type II restriction modification system, methylation subunit
[Candidatus Cloacamonas acidaminovorans]
gi|167730205|emb|CAO81117.1| Type II restriction modification system, methylation subunit
[Candidatus Cloacamonas acidaminovorans]
Length = 299
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 68/291 (23%), Positives = 107/291 (36%), Gaps = 42/291 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
Q + E+ +K+I G S ++++P SV L+ PPYN+ +
Sbjct: 35 QTKKVIDKTENPFPEEYLNKVILG-SAENMQEIPDNSVHLMITSPPYNVSKDY------- 86
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIF---RIG 115
DK S Y RVL G + IG I I
Sbjct: 87 ----------DKNLSLRQYLELLENSFRETYRVLVNGGRACINVANIGRKPYIPLSDYIS 136
Query: 116 TMLQNLNFWILNDIVWRK--SNPMPNFRGRRFQ-------NAHETLIWASPSPKAKGYTF 166
++ N+ F + +I+W K S G + HE ++ S Y
Sbjct: 137 QIMINIGFNMRGEIIWNKASSASPSTAWGSWMSATNPILRDIHEYILIFSKGD----YNR 192
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
N ++ +E + + HP PE L R++ + DI
Sbjct: 193 NKKGKQSTIRKEDFIEWTKSVWVMKAESAK----KIGHPAPFPEELPYRLIQLYSFQDDI 248
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
ILDPF GSGT+ + K R FIG E++ YI++ +RI++ +EL
Sbjct: 249 ILDPFMGSGTTAISSLKSHRYFIGYEIEPAYIELCNRRISTYLDQLTLELE 299
>gi|51596132|ref|YP_070323.1| DNA methyltransferase [Yersinia pseudotuberculosis IP 32953]
gi|51589414|emb|CAH21036.1| putative DNA methyltransferase [Yersinia pseudotuberculosis IP
32953]
Length = 308
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 70/302 (23%), Positives = 100/302 (33%), Gaps = 68/302 (22%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I G+ I + K+P +SV PPY + V S A+
Sbjct: 4 QIFIGDCIDSMRKMPDQSVHSCITSPPYYGLRDY-----------GVEGQIGLEESPAAF 52
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYH---------NIFRIGTMLQNLNFWILNDIVWR 132
A RRVL+ +GTLWV +R LQN + + DI+W
Sbjct: 53 IQRLVAVFREVRRVLRDDGTLWVNMGDSWDKGKQLNGMPWRFAFALQNDGWILRQDIIWH 112
Query: 133 KSNPMPNFRGRRFQNAHETLIWASP-----------------------------SPKAKG 163
KSNPMP R AHE + S K+
Sbjct: 113 KSNPMPESVRDRCTKAHEYIFLLSKSKSYYFDHEAIREPSVYSGKNTGVGFGHGMDKSDR 172
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-------------------GEKLH 204
A + R+ + G+ R KD ++ H
Sbjct: 173 NRGRISARDNFKREDSKRAVVIPGQNVGTHRADRKDTVSDGMRAKRNVWTVATRGYKEAH 232
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
P AL+ +++ G +ILDPF GSGT+ VA R I E+ Y ++ R
Sbjct: 233 FATFPPALIEPCVLAGCPTGGVILDPFGGSGTTAGVAIGSGRKAILCELNPAYAELVPAR 292
Query: 265 IA 266
I
Sbjct: 293 IE 294
>gi|39304|emb|CAA38200.1| unnamed protein product [Bacillus amyloliquefaciens]
Length = 400
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 76/304 (25%), Positives = 122/304 (40%), Gaps = 39/304 (12%)
Query: 1 MSQKNSLAINENQNSIFEWK-------DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+ KNS+ +NE NSI E K K+ G+ + + +++P ++VD IFADPP+NL
Sbjct: 70 LENKNSVKLNEF-NSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNLDK 128
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ VTD +SF Y + W+ C RVLKP G+L++
Sbjct: 129 EYD---------EGVTDK----NSFSGYLDWYYKWIDECIRVLKPGGSLFIYNIPKWNTY 175
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY----- 168
+ L N I +P N +L++ K K +
Sbjct: 176 LSEYLNRKLN-FRNWITVDMKFGLPIQNRLYPAN--YSLLYYVKGDKPKTFNVQRIPLQT 232
Query: 169 --------DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ + L + S +R+ + + LL RI+ S
Sbjct: 233 CPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLLDRIITMS 292
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
T GD++LDPF GSGT+ AV++ L R +IG E+ +I +R+ + + V
Sbjct: 293 TNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFELGN--CEIIKERLKNKDKDKKLLGKVYE 350
Query: 281 GKRT 284
K
Sbjct: 351 EKNK 354
>gi|153870157|ref|ZP_01999614.1| type II DNA modification enzyme [Beggiatoa sp. PS]
gi|152073377|gb|EDN70386.1| type II DNA modification enzyme [Beggiatoa sp. PS]
Length = 526
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 70/371 (18%), Positives = 123/371 (33%), Gaps = 104/371 (28%)
Query: 20 KDKIIKGNSISVLE---KLPAKSVDLIFADPPYNLQLNGQLYRPD---HSLVDAVTDSW- 72
+K+ G+ + VL ++ +SVDLI+ DPP+N + N ++ D + A D+W
Sbjct: 1 MNKLYLGDCLDVLRNELEIKPESVDLIYIDPPFNSKRNYNIFFDDKEIQTQRMAFEDTWS 60
Query: 73 ----------------DKFSSFEA-----------YDAFTRAWLLACRRVLKPNGTLWVI 105
DK + Y ++ +VLKP G+ ++
Sbjct: 61 LHSVGESLTELDTIHHDKLLNLLNAYRDIAPQVFPYLVMMTLRIIELHKVLKPTGSFYLH 120
Query: 106 GSYHNIFRIG----------------------------------------------TMLQ 119
+
Sbjct: 121 CDPTASHYLKTVCDAVFGVKNFRNEISWKRSTPRGNASKKLAVSCDVVLFYTKSGLYTWY 180
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNA----HETLI-WASPSPKAKGYTFNYDALKAA 174
+ + + + N + + GR FQ H+ + +K + + L
Sbjct: 181 PIYGEYRPEYIAKYYNYIDDDTGRFFQPTSLLGHQEVNPIYEWQGLSKPWRYPKHRLDEL 240
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKL-------------------HPTQKPEALLSR 215
E+ Q+ + L + G+ L +PTQKP+ALL R
Sbjct: 241 EENQQIYWPPKGGMPRFKRYLDEQKGQPLQSLWDDIPPINSQAIERLGYPTQKPKALLER 300
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
I+ +S+ GDIILD F G GT+ A+ L R +IGI++ + + +R+ +
Sbjct: 301 IIQASSNEGDIILDAFCGCGTTVDAAESLNRQWIGIDIAPFALSLIKRRLQDTYGDDLSK 360
Query: 276 LTVLTGKRTEP 286
V EP
Sbjct: 361 FEVRGTPTDEP 371
>gi|88604170|ref|YP_504348.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
gi|88189632|gb|ABD42629.1| DNA methylase N-4/N-6 [Methanospirillum hungatei JF-1]
Length = 329
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 65/266 (24%), Positives = 121/266 (45%), Gaps = 6/266 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
G+ I +P +VDLI DPPY ++ +L+R + VTD + + + E Y+
Sbjct: 11 FYNGDCIKGAALIPDNTVDLIITDPPYGIE-GDKLHRHYNRDESFVTDGYVEIPA-EEYE 68
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+FTR W+L R+L+P G+L+++ Y ++ I L + +N I+WR + + F
Sbjct: 69 SFTRDWILQAERILRPGGSLYIVSGYTHLRHILNALYETSLEEVNHIIWRYNFGV--FTS 126
Query: 143 RRFQNAHETLIWASPS-PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
++ ++H +++ + K T +L +E+ + R K G+
Sbjct: 127 LKYVSSHYHILFYAKPGGKRTFNTECRFSLSEKDENGGSLNYQDREDVWIINR-EYKPGK 185
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ + P ALLS+I+ S+ GD++ D F G ++ A L R G E+ D
Sbjct: 186 VKNKNELPTALLSKIIQYSSNEGDLVCDLFLGGFSTAKTAIGLLRRATGFEISPVMYDAK 245
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPR 287
+ +V P ++ + + R
Sbjct: 246 IDEMMAVVPGFLLDTAQTPKEPSRKR 271
>gi|317503648|ref|ZP_07961665.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
salivae DSM 15606]
gi|315665169|gb|EFV04819.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
salivae DSM 15606]
Length = 319
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 73/282 (25%), Positives = 122/282 (43%), Gaps = 35/282 (12%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+K + N+ + S + + +I + L+ +P LI DPPYNL +
Sbjct: 24 EKAIINANDLKKSFAD--NSVINADLFDCLDVIPNDYFHLIIIDPPYNLAKDF-----HG 76
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ + + +Y+A+ R+W L PNGTL++ G + + ++
Sbjct: 77 NKFSKLNTT--------SYEAYLRSWFGKVCDKLVPNGTLYMCGDWQCSLSMQKVISERL 128
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF---NYDALKAANEDVQ 179
+ R+ ++NA E + +A +PK + A V
Sbjct: 129 TILNRITWQREKGRG---AKANWKNAMEDIWFAVKNPKDYYFDVEAVKMKRKVIAPYKVD 185
Query: 180 MRSDWLIPICSGSERL--------------RNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+ SG+ R+ + HPTQKPE L ++++++STKPGD
Sbjct: 186 GKPKDWEQTESGNFRITYPSNFWDDISIPFWSMPENTDHPTQKPEKLYAKLILASTKPGD 245
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
I DPF GSGTS VA KL R+++GIE+ +DY A KR+ +
Sbjct: 246 KIFDPFLGSGTSAVVAYKLNRNYVGIELNRDYCLWAAKRLMN 287
>gi|259502088|ref|ZP_05744990.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259169901|gb|EEW54396.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 326
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 64/269 (23%), Positives = 107/269 (39%), Gaps = 33/269 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S+ +D+ I G+S V+ + P + DL DPPYNL D + K
Sbjct: 41 SLAAIRDRSINGDSFQVVRQFPDRFADLALVDPPYNLDKRY----------DGLNF---K 87
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S Y +T+ W+ + L P +L+V + + +L + + + +
Sbjct: 88 HQSTGEYQEYTQRWIDLIKPKLTPTASLYVFADWQTSVALAPVLAANFT--VKNRITWQR 145
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAK---------------GYTFNYDALKAANE--D 177
+G +N E + + + + Y N A
Sbjct: 146 EKGRGAKGNW-KNGMEDIWFLTMDEREYTFNVDQVKQRRQVIAPYRENGQAKDWHESAAG 204
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ S + HPTQKPE LL++++++S+ PGD++LDPF G+G+S
Sbjct: 205 RFRDTMPSNFWDDISIPYWSMAENTGHPTQKPEKLLAKLILASSNPGDLVLDPFAGAGSS 264
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
AKKL R F+GIE + Y R+
Sbjct: 265 LVTAKKLDRHFVGIEQSRLYTAWGVYRLQ 293
>gi|257459285|ref|ZP_05624399.1| DNA methylase [Campylobacter gracilis RM3268]
gi|257443298|gb|EEV18427.1| DNA methylase [Campylobacter gracilis RM3268]
Length = 222
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 88/249 (35%), Gaps = 34/249 (13%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + + + +P VDL+ DPPY + G + + E
Sbjct: 3 LNKIYNTDCLEFMRSMPDSCVDLVVTDPPYEIHTKGGGLGKRPVYENGALSKISQGFDAE 62
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
A R K N +++ S RI + + + + PN
Sbjct: 63 ATLE------QIARICKKIN--IFIFCSTKQKPRI-----MNWGYERDCNIAELAWYKPN 109
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
L + L N
Sbjct: 110 AAPFTNNTFKSDLENIIYIREKGVKIKGISRLFTHNCGKS-------------------- 149
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ HPT+KP ++ +++++++ GD+I DPF GSGT+ A K+L R+FIG E++ Y +
Sbjct: 150 -KYGHPTEKPLEIIEKLILTASNEGDLIFDPFMGSGTTAAACKELNRNFIGCEIESKYCE 208
Query: 260 IATKRIASV 268
IA KR+
Sbjct: 209 IAEKRLRKT 217
>gi|319900714|ref|YP_004160442.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
36-108]
gi|319415745|gb|ADV42856.1| DNA methylase N-4/N-6 domain protein [Bacteroides helcogenes P
36-108]
Length = 277
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 65/276 (23%), Positives = 99/276 (35%), Gaps = 39/276 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + L+ L + PPYN+ + P Y
Sbjct: 21 LLYNMDCRKGLKLLNDTCFNSTITSPPYNIGKEYETVMPIG-----------------DY 63
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
+ + ++ P G+ + Y N G + + + + N+
Sbjct: 64 IDWLTDIIKLIHKLTVPTGSFLLNVGYLNFPNKGKAVPIPYLLWDKIPFFLQQEIVWNYG 123
Query: 141 ----RGRRFQNAHETLIWASPSPKAKGYTFNYDALK---------------AANEDVQMR 181
R +E ++W + K YTFN D ++ N +
Sbjct: 124 AGVSAKRFLSPRNEKILWYIKNEK--NYTFNLDEIRDPDVKYPNQKKNGKLRCNSIGKNP 181
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
SD S R + HP Q PE L+ R+++ T DIILDPF GSGT GAVA
Sbjct: 182 SDVWQIAKVTSGTNRASEERTAHPAQFPEDLIKRLILGFTNKNDIILDPFMGSGTVGAVA 241
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
+L R FIG E+ DY +IA KRI + + L
Sbjct: 242 IELGRKFIGFEINSDYCEIAPKRIQTKYDEKKMRLF 277
>gi|328954607|ref|YP_004371941.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
gi|328454931|gb|AEB10760.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 309
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 45/261 (17%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+++ II G S + +P S+ L+ PPYN VT +D++ S
Sbjct: 50 YENSIILG-SSENMTLIPDNSLHLMITSPPYN-----------------VTKEYDQYLSL 91
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------IGTMLQNLNFWILNDI 129
+ Y + RVL G V + N+ R + ++ + F + +I
Sbjct: 92 KEYLQLLQRVFSETYRVLTNGGRACVNIA--NLGRQPYLPLSDFVSAIMLEIGFQMRGEI 149
Query: 130 VWRKSNPMPNFRGRRFQNA---------HETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+W K + HE ++ + + + + +
Sbjct: 150 IWNKGAGAGVSMAWGSWRSASAPVLRDVHEYILVFAKGSFRRKKPRGRENTISKEQ---F 206
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
E + + HP P L R++ T D+ILDPF GSGT+
Sbjct: 207 MEWTKSIWTMNPESAK----KVGHPAPFPIELPYRLIQLYTFTEDVILDPFMGSGTTAIA 262
Query: 241 AKKLRRSFIGIEMKQDYIDIA 261
A K R +IG E +Y+ +A
Sbjct: 263 ALKAGRKYIGYENNPEYVKLA 283
>gi|119386545|ref|YP_917600.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119377140|gb|ABL71904.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
PD1222]
Length = 311
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 39/262 (14%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
++ + +LP +S+ LI PPYN+ + + K +S E Y A
Sbjct: 51 NLKFMRRLPDESMSLIVTSPPYNIGKSYE-----------------KRTSQEKYVEDQAA 93
Query: 88 WLLACRRVLKPNGTLWVIGSYH----NIFRIGTMLQ----NLNFWILNDIVWRKSNPMPN 139
+ R+L PNG++ H IF + +L + + N IVW + +
Sbjct: 94 CIAEAVRLLAPNGSICWQVGNHVDSGEIFPLDILLYPLFKHHGLQLRNRIVWTFGHGLHC 153
Query: 140 FRGRRFQNAHETLIWASPSPKAKGY---------TFNYDALKAANEDVQMRSD--WLIPI 188
+ F HET++W + S N K N+ +
Sbjct: 154 QKR--FSGRHETILWFTKSEDYTFNLDPVRVPSKYPNKKHFKGPNKGELSSNPLGKNPSD 211
Query: 189 CSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+++ + HP Q P L+ R++++ T G+ +LDP+ G G+S A K R
Sbjct: 212 VWDIPNVKSNHVEKTDHPCQFPIGLVERLVLALTNEGESVLDPYLGVGSSAIAALKHGRH 271
Query: 248 FIGIEMKQDYIDIATKRIASVQ 269
G ++ + Y+DIA RI ++
Sbjct: 272 AYGCDLDKAYVDIAWDRIHQLR 293
>gi|296160132|ref|ZP_06842951.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
gi|295889606|gb|EFG69405.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
Length = 249
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 103/280 (36%), Gaps = 52/280 (18%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
W D+ G+ +++ +PA D DPPY
Sbjct: 1 MTWLDQCHFGDCRELMKAMPAAIADACITDPPY-------------------------GD 35
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ +D W+ RVLKP ++WV GS + + + F +IVWRK N
Sbjct: 36 TSLIWDRRCAGWIDQVSRVLKPASSIWVFGSMRFVATLFAEMDAAGFRYGQEIVWRKQNG 95
Query: 137 MPNFRGRRFQNAHETLIWA---------------------SPSPKAKGYTFNYDALKAAN 175
R + + + +T N +A +
Sbjct: 96 TGFHNDRFRRVHEFAIQFYRGAWEDVFKAPQYSNDATARTVRRKTRPTHTGNIEAGHYVS 155
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
ED R + N+ G LHPTQKP A+++ ++ S PG ++LDPF GSG
Sbjct: 156 EDGGPRLVQSVIEVP------NEHGRALHPTQKPLAIIAPLIAYSVPPGGVVLDPFLGSG 209
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
++G AK+L R FIG E + + R+ ++
Sbjct: 210 STGIAAKQLGRHFIGCEDDPASMAMQADRLRQRALQLDVA 249
>gi|71276169|ref|ZP_00652449.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71163087|gb|EAO12809.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
Length = 243
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 64/253 (25%), Positives = 99/253 (39%), Gaps = 32/253 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSWDK 74
+G+++ +L + + SVD + DPPY + Y + A D
Sbjct: 12 HEGDALRLLCDIDSASVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDCD- 70
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F + A++ WL CRRV +P G L V + + + +Q+ + +VW K+
Sbjct: 71 FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT 130
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
GR A E ++WAS M G
Sbjct: 131 PACRPQLGRFRSQA-EFIVWASCGL--------------------MNPKAHPVTPVGVFA 169
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
EK H KP AL+ ++ P +LDPF GSGT+G A + FIG+E+
Sbjct: 170 TGTAPREKRHQVGKPLALMEHLVKIV-PPTSTVLDPFAGSGTTGVAALRAGHQFIGMEIS 228
Query: 255 QDYIDIATKRIAS 267
Y D+A +R+A
Sbjct: 229 PWYCDVAKQRLAD 241
>gi|218129465|ref|ZP_03458269.1| hypothetical protein BACEGG_01042 [Bacteroides eggerthii DSM 20697]
gi|254881383|ref|ZP_05254093.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
4_3_47FAA]
gi|217988195|gb|EEC54518.1| hypothetical protein BACEGG_01042 [Bacteroides eggerthii DSM 20697]
gi|254834176|gb|EET14485.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
4_3_47FAA]
Length = 270
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 64/286 (22%), Positives = 105/286 (36%), Gaps = 38/286 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I + + ++++ SVD I AD PY + L R + S+ WD+ A
Sbjct: 5 DRIYLMDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSVN------WDRQIPLAA 53
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
W RR+ KP+ + + G +F ML W N + +
Sbjct: 54 ------LW-EQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHLN 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLR 196
R HE ++ A + N + + + R+
Sbjct: 105 AKRMPFRQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRIA 164
Query: 197 N--------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ K G HPTQKP AL+ ++ + T GD++LD GSGT+ A
Sbjct: 165 DDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAI 224
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
+ R +IG E++Q Y +IA +RI N + +
Sbjct: 225 RTGRHYIGFEIEQAYCEIAERRIQEELECRNKVQEEKEIREEKQNQ 270
>gi|328885682|emb|CCA58921.1| DNA methylase [Streptomyces venezuelae ATCC 10712]
Length = 251
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/252 (23%), Positives = 97/252 (38%), Gaps = 31/252 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---------DSWD 73
+ G+++ VL LP VD + DPPYN R + T D
Sbjct: 5 LHHGDALGVLAGLPDDCVDAVITDPPYNSGGRTAKERTSRTARQKYTSADAGHELADFPG 64
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +Y + + R+ KP GT + + + +Q + + W K
Sbjct: 65 ENMDQRSYGFWLTQIMTEAHRLTKPGGTALLFTDWRQLPVTTDAIQAAGWLWRGVLAWHK 124
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P RF+ + E ++WAS A+ + V + + SG
Sbjct: 125 PQARPQ--KGRFKQSCEFIVWAS-----------NGAIDGSRNPVYLPGLYSASQPSGKA 171
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R H TQKP ++ ++ + PG +LD GSG++G A R FIG+E
Sbjct: 172 R--------QHITQKPVEVMRELVKI-SPPGGTVLDFTCGSGSTGVAALLEGRDFIGVEK 222
Query: 254 KQDYIDIATKRI 265
+ Y +IA+ R+
Sbjct: 223 TRHYAEIASDRL 234
>gi|1171042|sp|P23941|MTB1_BACAM RecName: Full=Modification methylase BamHI; Short=M.BamHI; AltName:
Full=N(4)- cytosine-specific methyltransferase BamHI
Length = 423
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 77/304 (25%), Positives = 122/304 (40%), Gaps = 39/304 (12%)
Query: 1 MSQKNSLAINENQNSIFEWK-------DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+ KNS+ +NE NSI E K K+ G+ + + +++P ++VD IFADPP+NL
Sbjct: 93 LENKNSVKLNEF-NSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNLDK 151
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ VTD +SF Y + W+ C RVLKP G+L++
Sbjct: 152 EYD---------EGVTDK----NSFSGYMDWYYKWIDECIRVLKPGGSLFIYNIPKWNTY 198
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY----- 168
+ L N I +P N +L++ K K +
Sbjct: 199 LSEYLNRKMN-FRNWITVDMKFGLPIQNRLYPAN--YSLLYYVKGDKPKTFNVQRIPLQT 255
Query: 169 --------DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ + L + S +R+ + + LL RI+ S
Sbjct: 256 CPHCGREIKDYGGYKNKMNPKGVTLSDVWSDIYPVRHSSSKNRKFNELSVKLLDRIITMS 315
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
T GD++LDPF GSGT+ AV++ L R +IG EM +I +R+ + + V
Sbjct: 316 TNEGDVVLDPFGGSGTTFAVSEMLGRKWIGFEMGN--CEIIKERLKNKDKDKKLLGKVYE 373
Query: 281 GKRT 284
K
Sbjct: 374 EKNK 377
>gi|298378889|ref|ZP_06988771.1| methylase [Escherichia coli FVEC1302]
gi|301046627|ref|ZP_07193760.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
gi|298280498|gb|EFI22001.1| methylase [Escherichia coli FVEC1302]
gi|300301419|gb|EFJ57804.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
Length = 227
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/253 (23%), Positives = 97/253 (38%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ V D W + +S
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK N + ++ I R + F ++ +V+ K+ +
Sbjct: 57 ---------EMYRVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 SAYVAYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|323485979|ref|ZP_08091310.1| hypothetical protein HMPREF9474_03061 [Clostridium symbiosum
WAL-14163]
gi|323400546|gb|EGA92913.1| hypothetical protein HMPREF9474_03061 [Clostridium symbiosum
WAL-14163]
Length = 318
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 66/322 (20%), Positives = 107/322 (33%), Gaps = 91/322 (28%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
DKI G+S+ VL+ LP +D PPY + + ++ E
Sbjct: 6 DKIYCGDSLQVLQALPENCIDCCVTSPPYYGLRDY-----------GADGQIGREATPEE 54
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
Y + A +RVL P GT W+ +
Sbjct: 55 YVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKAGHQDPKYPKGRNGQQVAVNHRAP 114
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ + I+W K+NPMP R +E + + + K
Sbjct: 115 GCKPKDLIGIPWLVALALRGDGWYLRSSIIWYKTNPMPESCKDRPTRCYEYVFLLTKTKK 174
Query: 161 AKGYTFNYDALKAA--------------NEDVQMRSDWLIPICSGSERLRNK-------- 198
Y +++ A+ + + R R K
Sbjct: 175 ---YYYDWQAVAEPIAPATAGRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEMI 231
Query: 199 ---------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
H P L +++ G I+LDPF GSGT+ A AK
Sbjct: 232 SPVRSRRNVWQINTTSYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAKS 291
Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
L R +IGIE+ DY ++A +RI
Sbjct: 292 LSRRYIGIELNPDYCELAKQRI 313
>gi|290956711|ref|YP_003487893.1| DNA methylase [Streptomyces scabiei 87.22]
gi|260646237|emb|CBG69332.1| putative DNA methylase [Streptomyces scabiei 87.22]
Length = 251
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 31/252 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT---------DSWD 73
+ +G+++SVL LP VD + DPPYN R S T D
Sbjct: 5 LHQGDALSVLADLPDDCVDSVITDPPYNSGGRTAKERTTRSAKQKYTSADAQHTLPDFTG 64
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +Y + + R+ + GT + + + +Q + + W K
Sbjct: 65 ENMDQRSYGFWLTQIMTEAHRLTRTGGTALLFTDWRQLPVTTDAIQAAGWLWRGVLAWHK 124
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P RF E ++WAS A+ + V + + SG++
Sbjct: 125 PQARPQ--KGRFTQNCEFIVWASKG-----------AIDGSRNPVYLPGMYSASQPSGAK 171
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R H TQKP ++ ++ + G +LD GSG++G A R FIG+E
Sbjct: 172 R--------QHITQKPVEVMRELVKI-SPEGGTVLDFCAGSGSTGVAALLEGRDFIGVEK 222
Query: 254 KQDYIDIATKRI 265
+ Y IA R+
Sbjct: 223 TEHYASIAADRL 234
>gi|317010047|gb|ADU80627.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
India7]
Length = 260
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/264 (26%), Positives = 110/264 (41%), Gaps = 40/264 (15%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+KL KSVDL DPPYNL++ SWD F +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKND 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E + F+ AW+ +K G+ ++ + N L++ LN I W K +
Sbjct: 46 EEFLTFSYAWIDKVLPKIKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFA 105
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYT-----------------------FNYDALKAAN 175
N + R +A E++++ S K + N
Sbjct: 106 NAKKRY-NHAQESILFYSMHKKNYTFNADEIRIAYESTERIKHAQSKGILKNNKRWFPNP 164
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ W I E+ K + HP+ KP+AL+ R++ +S+ D+ILD F GSG
Sbjct: 165 KGKLCLDVWEIASQRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224
Query: 236 TSGAVAKKLRRSFIGIEMKQDYID 259
+ VAK L R+FIG E +Y+
Sbjct: 225 MTSLVAKSLERNFIGCESHAEYVH 248
>gi|260751940|ref|YP_003232478.1| DNA modification methylase [Escherichia coli O26:H11 str. 11368]
gi|257757303|dbj|BAI28803.1| DNA modification methylase [Escherichia coli O26:H11 str. 11368]
Length = 227
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + R ++ V D W + +S
Sbjct: 3 RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 57 ---------EMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|323959010|gb|EGB54680.1| DNA methylase [Escherichia coli H489]
Length = 227
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/253 (23%), Positives = 97/253 (38%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ V D W + +S
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK N + ++ I R + F ++ +V+ K+ +
Sbjct: 57 ---------EMYRVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 SAYVAYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IG+E+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGVELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|189461076|ref|ZP_03009861.1| hypothetical protein BACCOP_01723 [Bacteroides coprocola DSM 17136]
gi|265753960|ref|ZP_06089315.1| DNA methylase [Bacteroides sp. 3_1_33FAA]
gi|189432166|gb|EDV01151.1| hypothetical protein BACCOP_01723 [Bacteroides coprocola DSM 17136]
gi|263235674|gb|EEZ21198.1| DNA methylase [Bacteroides sp. 3_1_33FAA]
Length = 270
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/286 (22%), Positives = 105/286 (36%), Gaps = 38/286 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I + + ++++ SVD I AD PY + L R + S+ WD+ F A
Sbjct: 5 DRIYLMDCMEGMKQIADSSVDAIIADLPYGV-----LNRSNPSVN------WDRQIPFAA 53
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
W RR+ KP+ + + G +F ML W N + +
Sbjct: 54 ------LW-EQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHLN 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLR 196
R HE ++ + N + + + R+
Sbjct: 105 AKRMPLRQHEDILVFYKKQPVYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRIA 164
Query: 197 N--------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ K G HPTQKP AL+ ++ + T GD++LD GSGT+ A
Sbjct: 165 DDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAI 224
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
+ R +IG E++Q Y +IA +RI N + +
Sbjct: 225 RTGRHYIGFEIEQVYCEIAERRIQEELECRNKAQEEKEIREEKQNQ 270
>gi|103487781|ref|YP_617342.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
gi|98977858|gb|ABF54009.1| DNA methylase N-4/N-6 [Sphingopyxis alaskensis RB2256]
Length = 287
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 41/266 (15%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
++++ + LP +S+ LI PPYN+ + P Y
Sbjct: 19 CQDNLAFMRPLPDESMKLIVTSPPYNIGKAYEQRSP-----------------LAEYVKG 61
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWRKSNP 136
+ C R+L G+L H + + + + N ++W +
Sbjct: 62 QAQVISECVRLLSKGGSLCWQVGNHVDRGEIFPLDMVLYPIFKEHGLNLRNRVIWHFEHG 121
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +R +ET++W + + + + + A + SG+ +
Sbjct: 122 L--HCSKRLSGRYETILWFTKG-DSYHFDVDPIRVPAKYPGKKHFKGPKAGQLSGNPLGK 178
Query: 197 NKD-------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
N + HP Q P L+ R++++ T+PGD + DP+ G G+S A
Sbjct: 179 NPGDVWIFPNVKSNHVEKTSHPCQFPVELVERLVLALTEPGDAVFDPYMGVGSSVVAAAM 238
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
R G ++ +Y+DIA R+ +++
Sbjct: 239 HDRIGYGCDVVSEYVDIAWHRVHALR 264
>gi|153870455|ref|ZP_01999854.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
gi|152073077|gb|EDN70144.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
Length = 323
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 61/279 (21%), Positives = 96/279 (34%), Gaps = 53/279 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +L LP S+ LI PPYNL + K +S + Y
Sbjct: 24 LYHGDVNELLCTLPDNSISLIVTSPPYNLGKVYE-----------------KRTSIDQYL 66
Query: 83 AFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNLNFWILN-----DIVWRKSNP 136
+ RVLK NG+ W +G++ + +
Sbjct: 67 EIQTKVIKQLHRVLKENGSICWQVGNFVEKGEVYPLDIFYYDIFKKLNLKLRNRIIWHFG 126
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------------ALKAANEDVQMRS-- 182
+R +ET++W + ++ YTFN D K N+ +
Sbjct: 127 HGLHTSKRLSGRYETILWFTK---SEHYTFNLDPVRVPSKYPGKRHYKGVNKGKPSGNPL 183
Query: 183 -------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
DW N + +H Q P L+ R +++ T D + D
Sbjct: 184 GKNPSDVWEIVAQDWEEAFWEIPNVKSNHPEKTIHSCQYPIELVERCVLALTNENDWVFD 243
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P+ G GTS A K R +G E + YIDIA +R +
Sbjct: 244 PYAGVGTSLIAAIKHNRRAVGSEKRAQYIDIAHERFNAY 282
>gi|71276089|ref|ZP_00652370.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71163172|gb|EAO12893.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
Length = 243
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 30/252 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQL-----NGQLYRPD--HSLVDAVTDSWD-KF 75
+G+++ +L + + SVD + DPPY + R +S + +D F
Sbjct: 12 HEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTRTKYLNSTAKHIAPDFDCDF 71
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ A++ WL CRRV +P G L V + + + +Q+ + +VW K+
Sbjct: 72 RDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKTP 131
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
GR A E ++WAS M G
Sbjct: 132 ACRPQLGRFRSQA-EFIVWASCGL--------------------MNPKAHPVTPVGVFAT 170
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
EK H KP AL+ ++ P +LDPF GSGT+G A + FIG+E+
Sbjct: 171 GTAPREKRHQVGKPLALMEHLVKIV-PPTSTVLDPFAGSGTTGVAALRAGHQFIGMEISP 229
Query: 256 DYIDIATKRIAS 267
Y D+A +R+A
Sbjct: 230 WYCDVAKQRLAD 241
>gi|170729631|ref|YP_001775064.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
gi|167964424|gb|ACA11434.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
Length = 243
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 32/255 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSW 72
++ +G+++ +L + + +VD + DPPY + Y + A
Sbjct: 10 RLHEGDALRLLCDIDSANVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDC 69
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D F + A++ WL CRRV +P G L V + + + +Q+ + +VW
Sbjct: 70 D-FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWD 128
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K+ R A + + K +T G
Sbjct: 129 KTPACRPQLVRFRSQAEFIVWASCGLMNPKAHT---------------------VTPVGV 167
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
EK H KP AL+ ++ P ILDPF GSGT+G A + FIG+E
Sbjct: 168 FTTGTAPREKRHQVGKPLALMEHLIKIV-PPTSTILDPFAGSGTTGVAALRAGHRFIGME 226
Query: 253 MKQDYIDIATKRIAS 267
+ Y D+ +R+A
Sbjct: 227 LSPWYCDVTKQRLAD 241
>gi|119382877|ref|YP_913933.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119372644|gb|ABL68237.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
PD1222]
Length = 225
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/256 (22%), Positives = 96/256 (37%), Gaps = 41/256 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ +I + + ++ SVD I DPPY V D + + +
Sbjct: 9 RNLVINADCVEAMQAFGTGSVDFILTDPPY---------------VTRFRDRQGRTVAND 53
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ R RVLK G ++ + + F I+ +V+RK
Sbjct: 54 DNARWLRPAFAQMHRVLKDGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRYA--- 110
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
R + HE + D L
Sbjct: 111 SSARFLRYEHEQAYLLAKGDPELPAQPVPDVLDF-----------------------PYT 147
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G +LHPTQKP A L R++ + T+PGD++LDPF GSG++ A A L R ++G+E+ +
Sbjct: 148 GNRLHPTQKPVAALRRLIGAFTQPGDLVLDPFSGSGSTLAAAHLLGRDWLGVELDVSHYQ 207
Query: 260 IATKRIASVQPLGNIE 275
+R+A++Q
Sbjct: 208 TIGRRMAALQERDRKA 223
>gi|298372547|ref|ZP_06982537.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
str. F0058]
gi|298275451|gb|EFI17002.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
str. F0058]
Length = 280
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 110/277 (39%), Gaps = 23/277 (8%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
I +++K+ + + +L+ LP S+D+++ DP YN+ +N T W
Sbjct: 2 IENFRNKVFNEDVLKILKSLPDNSLDMVYGDPDYNVGINYAGR--------NYTQKW--- 50
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
Y + RVLKP G L+++ + + N + ++D VW +
Sbjct: 51 ---AEYIEWYVDLATESMRVLKPTGNLFMMNYPKQNAYLRVKYLDNNAYDVSDYVWIYNT 107
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-------WLIPI 188
+ R+ AH +++ A+ S Y N D ++ +
Sbjct: 108 NV-GHSPRKLTTAHRSILHATKSKNNAFYKDNISVPYQNPTDKRIMKRIADGHTGRMPYS 166
Query: 189 CSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ ++N +K H Q P L+ ++ S T+ D F GSG+ + K L+R+
Sbjct: 167 WFYYDLVKNVSKDKTFHSCQIPLPLVEMLIKSCTREQDDCFILFGGSGSELVLCKNLKRN 226
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+I E+ +Y + +R+ + + + +R
Sbjct: 227 YISCELHPEYYQMILERLNNNGFIEDKYRIPSIMERK 263
>gi|320538779|ref|ZP_08038457.1| putative DNA methylase [Serratia symbiotica str. Tucson]
gi|320031168|gb|EFW13169.1| putative DNA methylase [Serratia symbiotica str. Tucson]
Length = 214
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 41/249 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+S+ V+ PA S+D I DPPY + TD + + +
Sbjct: 3 RYILGDSMQVMAGYPANSIDFILTDPPY---------------LVGYTDRSGRSIANDKK 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + R R+LKP+ ++ + + F ++ +V+ K +
Sbjct: 48 DDWVRPAFREIFRLLKPDSLAVSFYGWNRVDTFMAAWKQTGFRVVGHLVFTKPYAS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D G
Sbjct: 105 SAFVGYQHECAYILAKGRPALPAQPRSDVQPW-----------------------EYTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP ++L ++ S T+PG I+LDPF GSG++ A + R +IGIE+ Y I
Sbjct: 142 RHHPTEKPVSILQALIESFTQPGAIVLDPFAGSGSTCVAAAQAGRRYIGIELLAQYHTIG 201
Query: 262 TKRIASVQP 270
+R+ ++P
Sbjct: 202 QQRLHRMRP 210
>gi|218890070|ref|YP_002438934.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
gi|218770293|emb|CAW26058.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
Length = 331
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/322 (18%), Positives = 101/322 (31%), Gaps = 82/322 (25%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+I G+ + L +P +S PPY + +
Sbjct: 1 MTLSHEIRVGDCLDALRAMPDQSFHCCITSPPYFGLRDY-----------GMASQIGLEQ 49
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-----------------HNI-------- 111
+ + A RRVL+ +GTLWV H+I
Sbjct: 50 TPAEFVARLVEVFREVRRVLRDDGTLWVNMGDSYASIAGGYAPEGSAGKHDIVSRNTRGA 109
Query: 112 ----------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
+R+ LQ+ +++ DI+W K NPMP R AH
Sbjct: 110 VRRGHRRKPAEGLKQKDLMGIPWRLAFALQDDGWYLRQDIIWHKPNPMPESVRDRCTKAH 169
Query: 150 ETLIWASP------------------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
E + + P G+ + + +D G
Sbjct: 170 EYVFMLTKSRRYYYDHEAVKEDAVSEHPSGNGFKRDARESYKNLDGTARGNDEQWTGVGG 229
Query: 192 SERLRN------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
R+ + H P L+ +++ G ++LDPF G+GT+ VA +
Sbjct: 230 KRNRRSVWTVPTAGFKGAHFATFPPDLIRPCVLAGAPRGGLVLDPFGGAGTTALVAMQEG 289
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R + IE+ +Y IA R+ +
Sbjct: 290 RRSVLIELNPEYAAIARNRLDT 311
>gi|327188048|gb|EGE55276.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
CNPAF512]
Length = 1045
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/388 (15%), Positives = 127/388 (32%), Gaps = 93/388 (23%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W ++++ G+S+ V+ L A V +I+ DPPY ++ +
Sbjct: 274 WSNRLVAGDSLLVMNSLLAKESMRGKVQMIYIDPPYGIKYGSNFQPFTNKRKLSDSDKDE 333
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ A D+W+ +Y + R L+ R +L +G ++V S N+ +
Sbjct: 334 DLNQEPEMIKAFRDTWELG--IHSYLTYLRDRLILARELLNDSGAVFVQISDENVHLVRG 391
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+L + F + N + + + G + L++ + + Y Y+ +
Sbjct: 392 VLDEI-FGVTNFVSQISFSKTGSVTGSHLGKVCDILLFYAKNKDRLKYRTLYEKKPDMDG 450
Query: 177 D---------------VQMRSDWLIPICSGSE--------------------------RL 195
D + G+ RL
Sbjct: 451 DYSEDPLKSDGFRSTTTCPYNFMGKSWPCGANEHWKVPIEGLDRAAKAGRIVPKTTSLRL 510
Query: 196 R----NKDGEKLHP--------------TQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + + + H + ++ R ++ +T PGD++LD GSGT+
Sbjct: 511 KKFATDFEYKVFHSVWLGFGGASNMQYVVETNTRIVERCILMTTDPGDLVLDITCGSGTT 570
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ------PLGNIELTVLTGKRTEPRVAFN 291
A+K R +I + + I +A +R+ + + L T R++
Sbjct: 571 AFTAEKWGRRWITCDTSRIAITLAKQRLMTASFDYYILKYPHEGLKGGFDHETAKRISLG 630
Query: 292 LLVERGLIQPGQILTNAQGNISATVCAD 319
+ I + + A AD
Sbjct: 631 SIGSNTDI---DKIFDEDHPKIAAALAD 655
>gi|91206320|ref|YP_538674.1| hypothetical protein UTI89_P075 [Escherichia coli UTI89]
gi|191174406|ref|ZP_03035910.1| DNA methylase family protein [Escherichia coli F11]
gi|218692919|ref|YP_002406031.1| putative methylase [Escherichia coli UMN026]
gi|237702490|ref|ZP_04532971.1| DNA modification methylase [Escherichia sp. 3_2_53FAA]
gi|256855314|ref|YP_003162558.1| putative methylase [Escherichia coli]
gi|293404634|ref|ZP_06648627.1| methylase [Escherichia coli FVEC1412]
gi|300898234|ref|ZP_07116587.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
gi|91075771|gb|ABE10651.1| hypothetical protein UTI89_P075 [Escherichia coli UTI89]
gi|190905339|gb|EDV64974.1| DNA methylase family protein [Escherichia coli F11]
gi|218350082|emb|CAQ87499.1| putative Site-specific DNA-methyltransferase [Escherichia coli
UMN026]
gi|226903271|gb|EEH89530.1| DNA modification methylase [Escherichia sp. 3_2_53FAA]
gi|256275526|gb|ACU68799.1| putative methyltransferase protein [Escherichia coli]
gi|281181684|dbj|BAI58013.1| conserved hypothetical protein [Escherichia coli SE15]
gi|291428346|gb|EFF01372.1| methylase [Escherichia coli FVEC1412]
gi|300358076|gb|EFJ73946.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
gi|307629844|gb|ADN74147.1| putative methylase [Escherichia coli UM146]
gi|315291423|gb|EFU50783.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
gi|323954226|gb|EGB50014.1| DNA methylase [Escherichia coli H263]
gi|324005838|gb|EGB75057.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
Length = 227
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ V D W + +S
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + ++ + R + F + +V+ K+ +
Sbjct: 57 ---------EMYRVLKKDALMVSFYGWNRVDRFMAAWKRAGFSVAGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A+ D L G
Sbjct: 105 SAYVAYRHECAYILAKGSPARPRNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|41179391|ref|NP_958699.1| adenine DNA methyltransferase [Bordetella phage BPP-1]
gi|40950130|gb|AAR97696.1| adenine DNA methyltransferase [Bordetella phage BPP-1]
Length = 251
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/257 (26%), Positives = 107/257 (41%), Gaps = 31/257 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ---LNGQLYRPD------HSLVDAVTDSW 72
++I+G ++ L +P++SVD + DPPY+ + + PD S T S
Sbjct: 7 QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSG 66
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D +Y + W+ C RVLKP G + + + +Q + I W
Sbjct: 67 D-SRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWD 125
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K F++ E ++W + VQ+ D C +
Sbjct: 126 KGRGARAPHKGYFRHQCEYVVWGTKGAA-----------------VQLEHDGPFDGCIQA 168
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
R+ K H T KP AL+ ++ PG ++LDPF GSGT+G A R FIGIE
Sbjct: 169 VVRRDD---KHHLTGKPTALMRELVR-PVMPGGVVLDPFAGSGTTGVAAVLSGRRFIGIE 224
Query: 253 MKQDYIDIATKRIASVQ 269
+ Y +I+ R+A+ +
Sbjct: 225 RETAYAEISRTRLAAAE 241
>gi|189346320|ref|YP_001942849.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
gi|189340467|gb|ACD89870.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
Length = 293
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 113/311 (36%), Gaps = 56/311 (18%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
E K + G+ +++L++LP SVDLIF PPY Q
Sbjct: 1 MEIKTDLYLGDCLNILKELPDNSVDLIFTSPPYADQREKTYG----------------GI 44
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIG---------SYHNIFRIGTMLQNLNFWILN 127
+ Y A+ RVLKP GT + S + + I M + ++
Sbjct: 45 HPDKYVAWFLPIAEQLLRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMKRQQGWFWTE 104
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE----------- 176
+ +W K N P RF+++ E LI + +K + N + +
Sbjct: 105 EFIWHKKNCYPGKWPNRFRDSWERLIQFNK---SKRFYMNQETVMVPMGEWSKSRLKRLS 161
Query: 177 ---------------DVQMRSDWLIPICSGSE--RLRNKDGEKLHPTQKPEALLSRILVS 219
+ + + L + K H P+ L +
Sbjct: 162 ETDKTRDESKVGSGFGKNISNWLDREKAYPTNVLHLATECNNKNHSAAFPQGLPEWFIKL 221
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
TK GD +LDPF GSGT+ AVAK+++R+ IGIE+ +Y ++ + + +
Sbjct: 222 FTKEGDTVLDPFMGSGTTNAVAKRMKRNSIGIEIVPEYYEMVKNELEPTELYLLEKKNSY 281
Query: 280 TGKRTEPRVAF 290
E R+
Sbjct: 282 AANLPERRIDI 292
>gi|295090203|emb|CBK76310.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
Length = 274
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/268 (19%), Positives = 104/268 (38%), Gaps = 29/268 (10%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ ++I +G+ + ++ +LP +V LI DPPY ++ Q H +++ +
Sbjct: 8 DYINQIFQGDCLHLMGELPDGAVSLILTDPPYGIRYQNQFAASPHPVLEG--------DA 59
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-- 135
Y+ F R+L P+ + + L+ F + N +V K
Sbjct: 60 GIDYERF----ARESYRILAPDSHAYFFTRFDCYPYHYQCLKTAGFAVKNCLVIEKGTLG 115
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYT----FNYDALKAANEDVQM---RSDWLIPI 188
+ + RG N+ + KA +T A ++
Sbjct: 116 GIGDLRGSFANNSEWVIF-CQKGRKAFRHTTLLQNRKKAGTQCHKGRNPSARYKTRFPAC 174
Query: 189 CSGSERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
G E + K + HPT K L+ ++ S+ PGD++ D F G+G++
Sbjct: 175 WFGPEYPKATYNSMWQKQHQIFHPTIKNVECLAWLIEISSNPGDLVFDGFMGTGSTALAV 234
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ R+F+G E+ Y +A +R+ +
Sbjct: 235 LETNRTFLGAEIFPAYWQVAQQRLTAWN 262
>gi|166364160|ref|YP_001656433.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
NIES-843]
gi|166086533|dbj|BAG01241.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 388
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/300 (22%), Positives = 108/300 (36%), Gaps = 41/300 (13%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
S+ + + + + ++ I G+ +LE++PA+SVDLIF PPY RP+
Sbjct: 96 SKLENRKKTKKEYKLSSLRNTIGFGDCSELLEEMPAESVDLIFTSPPYF------NARPE 149
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-------- 113
+S + E Y R + C RVL + S + R
Sbjct: 150 YSEFEEY----------ETYLLKLRQVIRKCHRVLSEGRFFVINISPVLLRRASRNQASK 199
Query: 114 -------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + + ++DI+W K GR + A + + Y
Sbjct: 200 RIAVPFDLHRIFVEEGYDFIDDIIWLKPEGAGWATGRGRRFAADRNPLQYKTVPVTEYVL 259
Query: 167 NYDALKAANEDVQMRSDWLIPIC------SGSERLR----NKDGEKLHPTQKPEALLSRI 216
Y D +R+ + G ER N HP P L ++
Sbjct: 260 VYRKHTDLLIDWHIRNHPDQEVVKASKIADGYERTNVWKINPVTNSKHPAAFPVELAEKV 319
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
+ + GD++LDPF GSGT G A L R F+ E +YI++ K I +
Sbjct: 320 ITYYSFKGDVVLDPFAGSGTVGLAAASLDRRFVLFESNFNYIELIRKLITEGNKTDLDSV 379
>gi|317481265|ref|ZP_07940336.1| DNA methylase [Bacteroides sp. 4_1_36]
gi|316902598|gb|EFV24481.1| DNA methylase [Bacteroides sp. 4_1_36]
Length = 308
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/315 (20%), Positives = 111/315 (35%), Gaps = 78/315 (24%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I + L+ +P+ S+ PPY + D + E
Sbjct: 1 MNQIYNSECLLGLKSIPSNSIHCCVTSPPYYNLRDY-----------GHEDQIGLEKTPE 49
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV-IGSYHN---------------------------- 110
Y +RV+K +GTLW+ IG +N
Sbjct: 50 EYIQKLVDVFREVKRVMKDDGTLWINIGDSYNGSGKAGNNPNYWSKHTAFGKLANKSTFG 109
Query: 111 ----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+ + L+ +++ DI+W K + MP R +HE +
Sbjct: 110 YPVKVTSCKPKDLIGIPWMLAFALRADGWYLRQDIIWSKPSVMPESVKDRCTKSHEYIFL 169
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK---------------- 198
S + K + N A A + D +R + + + R + K
Sbjct: 170 LSKN-KTYYFDSNAIAEPATSFDTIIRDRDITKLNNAPRRSKMKGLIHNDYLTRNKRSVW 228
Query: 199 -----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ H PE L+ + + I+LDPF GSGT+ VA+KL R++IG E+
Sbjct: 229 TVATQPLREAHFATYPEKLIVDCIKAGCPESGIVLDPFMGSGTTAVVARKLDRNYIGFEL 288
Query: 254 KQDYIDIATKRIASV 268
DY+ +A KRI+
Sbjct: 289 NPDYVCLAKKRISEE 303
>gi|325679434|ref|ZP_08159018.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
gi|324108862|gb|EGC03094.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
Length = 361
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 31/275 (11%)
Query: 4 KNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ + Q+ + K+ + ++ ++L KL +S D+I DPPY + G +
Sbjct: 110 EKKRTFTDEQDFLNAKKNLQAVLAHADAKTILNKLKTESFDMILTDPPYRVISGGTGGKN 169
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + D F+ D ++ C RVLKP+ + ++ N+ + +Q
Sbjct: 170 APRGMLSKND----GKIFDNNDIQFDEYIPECYRVLKPDRQAYFFTNFLNLQPLMEAVQR 225
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
F I N +VW K+N PN W + + + + A +N +
Sbjct: 226 AGFKIHNLLVWLKNNATPNR-------------WYMKNCEYVLFCYKGKAKAISNCGSKT 272
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ N G+KLH T+KP LL + +ST+ GD ILDPF GSG++ A
Sbjct: 273 VHQFD-----------NIKGQKLHETEKPVELLKMYIENSTEEGDWILDPFAGSGSTMAA 321
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
+ L R E+ + Y++ R S+ G E
Sbjct: 322 SLLLNRKVFTCEIDKKYLETIKNRAISIIKNGTDE 356
>gi|325679154|ref|ZP_08158746.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
gi|324109159|gb|EGC03383.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
Length = 361
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 31/275 (11%)
Query: 4 KNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ + Q+ + K+ + ++ ++L KL +S D+I DPPY + G +
Sbjct: 110 EKKRTFTDEQDFLNAKKNLQAVLAHADAKTILNKLKTESFDMILTDPPYRVISGGTGGKN 169
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + D F+ D ++ C RVLKP+ + ++ N+ + +Q
Sbjct: 170 APRGMLSKND----GKIFDNNDIQFDEYIPECYRVLKPDRQAYFFTNFLNLQPLMEAVQR 225
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
F I N +VW K+N PN W + + + + A +N +
Sbjct: 226 AGFKIHNLLVWLKNNATPNR-------------WYMKNCEYVLFCYKGKAKAISNCGSKT 272
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ N G+KLH T+KP LL + +ST+ GD ILDPF GSG++ A
Sbjct: 273 VHQFD-----------NIKGQKLHETEKPVELLKMYIENSTEEGDWILDPFAGSGSTMAA 321
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
+ L R E+ + Y+ + R S+ G E
Sbjct: 322 SLLLNRKVFTCEIDKKYLTVIKNRAISIIKNGTDE 356
>gi|73853262|ref|YP_308758.1| putative methylase [Escherichia coli]
gi|73476846|gb|AAZ76461.1| DNA methylase [Escherichia coli]
Length = 228
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRFGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + +H I R + F + +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWHRIDRFMAAWKRAGFSVAGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A+ D L G
Sbjct: 105 SAYVAYRHECAYILAKGSPARPRNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|323692831|ref|ZP_08107058.1| modification DNA methylase [Clostridium symbiosum WAL-14673]
gi|323503145|gb|EGB18980.1| modification DNA methylase [Clostridium symbiosum WAL-14673]
Length = 318
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 69/322 (21%), Positives = 111/322 (34%), Gaps = 91/322 (28%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
DKI G+S+ VL+ LP +VD PPY + + ++ E
Sbjct: 6 DKIYCGDSLQVLQTLPENAVDCCVTSPPYYALRDY-----------GADGQIGREATPEE 54
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
Y + A +RVL P GT W+ +
Sbjct: 55 YVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAFNHRAP 114
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ + I+W K+NPMP R +E + +
Sbjct: 115 GCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKTNPMPESTRDRPTRCYEYVFLLTK--- 171
Query: 161 AKGYTFNYDALKAA--------------NEDVQMRSDWLIPICSGSER------------ 194
+K Y +++ A+ + + R
Sbjct: 172 SKKYFYDWQAVAEPIAPTTAGRLKSGVGKGNKYNVTVPGQNQPQKINRPREKGAYADELI 231
Query: 195 -----------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ N H P L +++ G I+LDPFFGSGT+G VAK+
Sbjct: 232 SPVRSRRNVWQINNVAYHGGHFAAYPPKLAETCILAGCPVGGIVLDPFFGSGTTGMVAKR 291
Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
L R +IGIE+ DY D+A +RI
Sbjct: 292 LNRRYIGIELNPDYCDLAKQRI 313
>gi|225870605|ref|YP_002746552.1| modification DNA methylase [Streptococcus equi subsp. equi 4047]
gi|213033062|emb|CAP20345.1| modification DNA methylase [Streptococcus equi subsp. equi]
gi|225700009|emb|CAW94012.1| modification DNA methylase [Streptococcus equi subsp. equi 4047]
Length = 344
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 74/358 (20%), Positives = 134/358 (37%), Gaps = 94/358 (26%)
Query: 5 NSLAINENQNS-IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
N ++++ ++ I E +KII +++ L K+P +S+ PPY YR +
Sbjct: 2 NRMSVSRSKEEFIKENTNKIICSDALETLRKIPDESISCCITSPPY--------YRLRNY 53
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--------------- 108
+ + S+ E Y RR LK GT +++
Sbjct: 54 HKEG---QIGRESTVEEYLDRLLQVFREVRRALKKEGTCFIVIGDSYADSGGGKGQYIDP 110
Query: 109 --------------HNI------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
NI +R+ +L+ +++ +DI+W K N MP
Sbjct: 111 KYPKARNGSNALATENISGYKSKDLMGIPWRLALLLREDGWYLRSDIIWHKENAMPEACR 170
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R ++E + + + Y ++YDA+ ++V + ++ S ++ L+ G K
Sbjct: 171 DRPTRSYEHIFLLTK---SPKYYYDYDAMVEPMKEVS-KKRYVRGRKSDNKYLKENSGAK 226
Query: 203 L-------------------------------------HPTQKPEALLSRILVSSTKPGD 225
L H P L+ +++ +
Sbjct: 227 LQKINEARKYGEYKGDNVPQFRNKRDIWTINTTSFRGNHYATFPPKLVEICMIAGCPKNE 286
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
I+LDPF GSGT G VA + R +IGIE+ ++Y+++A RI+ N E K
Sbjct: 287 IVLDPFIGSGTVGFVALRHNRKYIGIELNEEYVNLAKNRISEEVKKFNEEQKQEVQKE 344
>gi|207092627|ref|ZP_03240414.1| adenine-specific DNA methylase [Helicobacter pylori HPKX_438_AG0C1]
Length = 680
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 78/314 (24%), Positives = 119/314 (37%), Gaps = 55/314 (17%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
K+ +N S E +IK + L L +S+D I+ DPP+N +
Sbjct: 288 FKDLEEEIKNLFSEDEINGTLIKSENYQALNSLKNRYKESIDCIYIDPPFNTGSDFAYI- 346
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
DKF + + L L P G+ ++ +N +G ML
Sbjct: 347 -------------DKFQD-STWLSLIHNRLELAYDFLSPQGSFYLHLD-NNANYLGRMLL 391
Query: 120 NLNFW---ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------- 169
N F N+I+W SN M N G F ET++ S + + Y
Sbjct: 392 NDIFGKENFRNEIIWYYSNKMAN-SGNSFAKNTETILNYSKNEEYIFYRQKEPRSEPVLL 450
Query: 170 ALKAANEDVQMRSDWLIPICS---------------------GSERLRNKDGEKLHPTQK 208
+ + + MR+ +ER++N + TQK
Sbjct: 451 SKREGRDGKNMRARDEYGKVIYELSHERYVDTLWNIPIIGSTSTERVKNNENL----TQK 506
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PE LL RI+ +S+ I+LD F GSGT+ AVA KL+R +IGIEM + + + R+ V
Sbjct: 507 PEKLLERIIQASSDENSIVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKKV 566
Query: 269 QPLGNIELTVLTGK 282
K
Sbjct: 567 IGALKSGAAKEFNK 580
>gi|308123713|gb|ADO14694.1| M.OkrAI [Oceanobacter kriegii]
Length = 407
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 42/271 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ +G+ S+L+ + + SVDLIF+DPP+NL D+ VD Y
Sbjct: 114 KLYRGDCYSLLKSMESDSVDLIFSDPPFNLDKIYPSDMDDNIKVD-------------KY 160
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN-F 140
+++ W+ C RVLKP G L++ N+ + L + +L W + +
Sbjct: 161 IGWSQEWIKECARVLKPGGALFMW----NLPKWNVALGSFVDGLLTFRNWIGVDIKYSLP 216
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE------------------DVQMRS 182
R +H +L++ K + + A+ + + +
Sbjct: 217 IRNRLYPSHYSLMYYIKGEKPNSFHPDRLAMDVCPKCYGDLKDYGGYKDKMNPLGINLSD 276
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
W + + + G + LL RI+ ++ GD++ DPF GSGT+ A+
Sbjct: 277 VWYDIPPVRHAKYKRRKG----SNELSLKLLDRIIEMASDEGDLVFDPFGGSGTTYMAAE 332
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R ++G E+ DI +R + ++ +
Sbjct: 333 LKGRRWVGCELGPT--DIIKERFSLIEEERD 361
>gi|218960689|ref|YP_001740464.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
gi|167729346|emb|CAO80257.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
Length = 403
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 62/260 (23%), Positives = 103/260 (39%), Gaps = 22/260 (8%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ D+I+ G+S +L +LP +DLIF PPYN L+ + D W+K
Sbjct: 156 DKYMDRIVCGDSKIILSQLPNNCIDLIFTSPPYNFGLDYEENEDDQ--------HWEK-- 205
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR---- 132
Y A C RVLK G + I T N+ + ++W+
Sbjct: 206 ----YFETLFAIFDECIRVLKYGGRFIINVQPLFSDYIPTHHIISNYLMQKKLIWKGEIL 261
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR--SDWLIPICS 190
N + + + F LK +D ++ D
Sbjct: 262 WEKNNYNCKYTAWGSWKSPSNPYLKYTWEFIEIFCKGTLKKIGDDKKIDISGDEFKKWVY 321
Query: 191 GSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ + K HP PE L ++++ + DI+LDPF G GT+ VAK +R +
Sbjct: 322 AKWSIAPERRMKEFNHPAMFPEELATKVIKLFSYQEDIVLDPFNGVGTTTLVAKLNKRHY 381
Query: 249 IGIEMKQDYIDIATKRIASV 268
+GI++ +Y A +R++S
Sbjct: 382 LGIDISSEYCSKAEERLSSF 401
>gi|38564764|gb|AAR23811.1| NheIM [Neisseria mucosa subsp. heidelbergiensis]
Length = 293
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 69/293 (23%), Positives = 111/293 (37%), Gaps = 57/293 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
II +++S L+KL S+ L PPY N K SS Y
Sbjct: 6 IINDDAVSGLKKLEDSSIQLTITSPPYYNLRNYACGES----------EIGKESSINEYI 55
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWRKS 134
+ + K +G L++ I +R+ L+ L + + +DI+W K
Sbjct: 56 NKLQDVFEILFKKTKSDGLLFLNLGDSYINGELAGIPWRVALSLKELGWILRSDIIWHKP 115
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N MP+ R HE + + +K Y +N D+++ + S +R
Sbjct: 116 NAMPSSVKNRPTVDHEYIFMFAK---SKQYKYNQDSIREPHVTFSELSKMRGGRSHFGKR 172
Query: 195 ------LRNKDGEKLH------------------------------PTQKPEALLSRILV 218
+N+ + LH PE L+ +
Sbjct: 173 EGTPEKGKNEGNKNLHDGRWDQAFHPQGRNKRTVWSISLGKFRGTHFAVFPEKLVEVCVK 232
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
+ + P D+I DPF GS T+G VA +L R FIGIE+ ++Y +A R+ S P
Sbjct: 233 AGSDPNDLICDPFSGSATTGVVAIRLNRRFIGIELSENYCQLAEDRLKSEVPN 285
>gi|82703297|ref|YP_412863.1| site-specific DNA-methyltransferase (adenine-specific)
[Nitrosospira multiformis ATCC 25196]
gi|82411362|gb|ABB75471.1| Site-specific DNA-methyltransferase (adenine-specific)
[Nitrosospira multiformis ATCC 25196]
Length = 673
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 77/425 (18%), Positives = 139/425 (32%), Gaps = 113/425 (26%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKS-------------VDLIFADPPYNLQLNGQLY 58
N+N + W +K+I G+++ ++ L + L++ DPP+ + Q
Sbjct: 64 NKNGVT-WHNKLIFGDNLQAMKTLLEMKRRGELCNADGTSGIRLVYIDPPFATRQEFQGA 122
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ A D + F R L+ R +L NG L+V Y I +L
Sbjct: 123 QD----QKAYQDKIYG----ATFIEFLRKRLILIRDLLSDNGLLYVHLDYRKSHYIKVIL 174
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--------- 169
+ R + H+ ++ + + K+ + FN+
Sbjct: 175 DEIFGEQNFMNEVAWCYGERELATRHWNRKHDNILVYAKNFKSDQHVFNWKEAAGQYSQG 234
Query: 170 ---ALKAANEDVQ---------------------------MRSDWLIPICSGSERLRNKD 199
+ +ED + E +R +D
Sbjct: 235 TLAKYEHIDEDGRKFQLRGRNVKGSPWRGKHGIPLDVEAANPEWVYRDYFDTKEGIRPRD 294
Query: 200 G-------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+P+ K ALL+RI+ S+ GD+++D F GSGT+ AVA+KL R
Sbjct: 295 WWSDIPFLNRASSDRYDYPSAKNPALLNRIIKVSSNIGDLVMDAFAGSGTTCAVAEKLNR 354
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLG-----------NIELTVLTGKRTEPRVA------ 289
+IGI+ + I KR+ ++ G N L + P
Sbjct: 355 RWIGIDCGKLAIYTIQKRMLNLSEKGKALKAKPFTLYNAGLYDFARLKELPWSDWRRFAL 414
Query: 290 -----------FNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIH-----R 333
+ G ++ ++ +G +S L SIH +
Sbjct: 415 TLFSCQSAPQRIGGIQFDGTLKASPVIIFDHRK------GNGATVSEETLRSIHEAAGSK 468
Query: 334 VGAKV 338
VG ++
Sbjct: 469 VGTRI 473
>gi|209524877|ref|ZP_03273423.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|209494756|gb|EDZ95065.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 301
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 69/301 (22%), Positives = 114/301 (37%), Gaps = 48/301 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+++ +K++ G+ +V +P S+ I PPY N D +
Sbjct: 2 DNLIHIINKVLLGDIRTVSVIIPDNSIQAIITSPPYFGHRNYTGK-------DGCANEIG 54
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHN------IFRIGTMLQNLNFWI 125
+ ++ Y + LK NG LW+ Y N +R+ L++ + +
Sbjct: 55 REANVTDYINNLVTCFEVVKPKLKNNGLLWLNLGDTYRNKQLEGVPWRVAFALKDRGWIL 114
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG-----------YTFNYDALKAA 174
+DI+W+K N MP+ R HE + S + +T
Sbjct: 115 RSDIIWKKPNAMPSSVKNRPTTDHEYIFMFSKNTDYYYDADAIREPHITFTEQSKMRGGR 174
Query: 175 NEDVQMRSDWLIPICSGSERLRNK----------------------DGEKLHPTQKPEAL 212
N + S SG++ L + H PE L
Sbjct: 175 NHFGKRNSTPENGKNSGNQNLHDGRWDQAFHPKGRNKRTVWEIPLGKFRDAHFAVYPEDL 234
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ L++ST+ GD++LDPF GSGT+G VA K R FIG E+ + Y +A RI +
Sbjct: 235 VKICLLASTRQGDLVLDPFTGSGTTGVVAIKHDRKFIGCELVKTYQKMAQNRIDEIIIQP 294
Query: 273 N 273
+
Sbjct: 295 S 295
>gi|194337217|ref|YP_002019011.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309694|gb|ACF44394.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 292
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 102/280 (36%), Gaps = 55/280 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +L+ LP SVDLIF PPY Q + Y
Sbjct: 7 LYLGDCTQLLKTLPDDSVDLIFTSPPYADQRKQTYG----------------GFHPDDYV 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFWILNDIVWRKS 134
+ L RVLKP GT + + + ++ ++ + +W K
Sbjct: 51 EWFLPISLQLLRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMRKQGWFWTEEFIWHKK 110
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS------------ 182
N P RF+++ E LI + +K + + A+ D
Sbjct: 111 NCYPGKWPNRFRDSWERLIQFNK---SKHFYMDQKAVMVPMGDWSKTRLKNLSETDKTRD 167
Query: 183 ----------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
D + + L + K H PE L + TK GD
Sbjct: 168 ESKVGSGFGKNISNWLDREMAYPTNVLHLATECNNKKHSAAFPEGLPEWFIKLFTKEGDT 227
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+LDPF GSGT+ AVA+++RR+ IGIE+ +Y D+ +
Sbjct: 228 VLDPFMGSGTTNAVAQRMRRNSIGIEIVPEYYDMVKTELK 267
>gi|153951324|ref|YP_001398064.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
gi|152938770|gb|ABS43511.1| DNA methylase [Campylobacter jejuni subsp. doylei 269.97]
Length = 250
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 32/259 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ + I + K+ S+DLI ADPPY Q+ G+ + F Y
Sbjct: 5 IVNSDIIEYITKIADNSIDLIIADPPYF-QIKGEF-------------DFGVFKDKHEYL 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHN----IFRIGTMLQNLNFWILNDIVWRKSNPMP 138
++ + WL+ +R+LK G++ + GS N R+ M+++ N ++ + + +++
Sbjct: 51 SWCKKWLIESKRILKDTGSMILWGSVGNREITFARLAIMIEDENIFLRKNWITQRNTRGI 110
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNY----------DALKAANEDVQMRSDWLIPI 188
+ N K+ YTFN D
Sbjct: 111 GTK----TNYMSVREDFLFLTKSNNYTFNIPYTNEKSTRKDFGANGKPRKNTHKRVSNVW 166
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+E ++ HPT K + L RI+ + + GD I PF GSG+ A + R
Sbjct: 167 ADIAEASQSSIERCNHPTVKAQKLCDRIIQTHSNEGDTIFVPFVGSGSEIISAIRNNRKA 226
Query: 249 IGIEMKQDYIDIATKRIAS 267
G E+ ++Y ++A R+
Sbjct: 227 FGCEINKEYCNLAKDRVNM 245
>gi|229269517|ref|YP_001338785.2| putative methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
Length = 233
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I GN I V+ P ++VDLI DPPY L G R + VTD W + ++
Sbjct: 3 RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATL--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + S++ + R + F+ + +V+
Sbjct: 57 ---------EMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVF---------- 97
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + + + A A L + G
Sbjct: 98 ----TKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----PYTGN 148
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
LHPTQKP L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y
Sbjct: 149 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 208
Query: 262 TKRIASVQ 269
T+R+ ++
Sbjct: 209 TERLDAMH 216
>gi|150958528|gb|ABR80555.1| hypothetical protein KPN_pKPN5p08175 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 258
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I GN I V+ P ++VDLI DPPY L G R + VTD W + ++
Sbjct: 28 RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATL--- 81
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + S++ + R + F+ + +V+
Sbjct: 82 ---------EMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVF---------- 122
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + + + A A L + G
Sbjct: 123 ----TKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----PYTGN 173
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
LHPTQKP L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y
Sbjct: 174 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233
Query: 262 TKRIASVQ 269
T+R+ ++
Sbjct: 234 TERLDAMH 241
>gi|229269516|ref|YP_001338706.2| putative methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
Length = 233
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I GN I V+ P ++VDLI DPPY L G R + VTD W + ++
Sbjct: 3 RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATL--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + S++ + R + F+ + +V+
Sbjct: 57 ---------EMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVF---------- 97
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + + + A A L + G
Sbjct: 98 ----TKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----PYTGN 148
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
LHPTQKP L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y
Sbjct: 149 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 208
Query: 262 TKRIASVQ 269
T+R+A++
Sbjct: 209 TERLAAMH 216
>gi|294496741|ref|YP_003560434.1| hypothetical protein pKpQIL_p057 [Klebsiella pneumoniae]
gi|150958448|gb|ABR80476.1| hypothetical protein KPN_pKPN4p07097 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|293339450|gb|ADE44004.1| hypothetical protein [Klebsiella pneumoniae]
Length = 258
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I GN I V+ P ++VDLI DPPY L G R + VTD W + ++
Sbjct: 28 RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATL--- 81
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + S++ + R + F+ + +V+
Sbjct: 82 ---------EMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVF---------- 122
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + + + A A L + G
Sbjct: 123 ----TKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----PYTGN 173
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
LHPTQKP L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y
Sbjct: 174 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233
Query: 262 TKRIASVQ 269
T+R+A++
Sbjct: 234 TERLAAMH 241
>gi|218672851|ref|ZP_03522520.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
GR56]
Length = 724
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 61/388 (15%), Positives = 127/388 (32%), Gaps = 93/388 (23%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W ++++ G+S+ V+ L A V +I+ DPPY ++ +
Sbjct: 162 WSNRLVAGDSLLVMNSLLAKESMRGKVQMIYIDPPYGIKYGSNFQPFTNKRKLSDSDKDE 221
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ A D+W+ +Y + R L+ R +L +G ++V S N+ +
Sbjct: 222 DLNQEPEMIKAFRDTWELG--IHSYLTYLRDRLILARELLNDSGAVFVQISDENVHLVRG 279
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+L + F + N + + + G + L++ + + Y Y+ +
Sbjct: 280 VLDEI-FGVTNFVSQISFSKTGSVTGSHLGKVCDILLFYAKNKDRLKYRTLYEKKPDMDG 338
Query: 177 D---------------VQMRSDWLIPICSGSE--------------------------RL 195
D + G+ RL
Sbjct: 339 DYSEDPLKSDGFRSTTTCPYNFMGKSWPCGANEHWKVPIEGLDRAAKAGRIVPKTTSLRL 398
Query: 196 R----NKDGEKLHP--------------TQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + + + H + ++ R ++ +T PGD++LD GSGT+
Sbjct: 399 KKFATDFEYKVFHSVWLGFGGASNMQYVVETNTRIVERCILMTTDPGDLVLDITCGSGTT 458
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ------PLGNIELTVLTGKRTEPRVAFN 291
A+K R +I + + I +A +R+ + + L T R++
Sbjct: 459 AFTAEKWGRRWITCDTSRIAITLAKQRLMTASFDYYILKYPHEGLKGGFDHETAKRISLG 518
Query: 292 LLVERGLIQPGQILTNAQGNISATVCAD 319
+ I + + A AD
Sbjct: 519 SIGSNTDI---DKIFDEDHPKIAAALAD 543
>gi|209543775|ref|YP_002276004.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531452|gb|ACI51389.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 226
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 41/252 (16%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++++ I+ G+S+ ++ +P SVD I DPPY + G+ R + +A
Sbjct: 10 DFRNTILNGDSVDLMRAMPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNA---------- 59
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ R + RVLK G ++ I + F ++ IV+RKS
Sbjct: 60 -----RWLRPAVNQMHRVLKWGGLAVSFYGWNKIDLFADAWKAAGFRMVGHIVFRKSYAS 114
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + +++ + MR +P +
Sbjct: 115 S----------------------SGFLRYEHESAYLLAKGNAMRPHQPVPDVIDM----S 148
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G +LHPTQKP A L ++ + G ++LDPF GSG+S A+ L R ++G+E+ ++
Sbjct: 149 YSGNRLHPTQKPVAALLPLVDTFCPAGGLVLDPFCGSGSSLVAAQHLGREWLGMELDAEH 208
Query: 258 IDIATKRIASVQ 269
+AT+R+A
Sbjct: 209 AAMATRRLAWHA 220
>gi|255008166|ref|ZP_05280292.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
fragilis 3_1_12]
Length = 270
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/286 (22%), Positives = 105/286 (36%), Gaps = 38/286 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I + + ++++ SVD I AD PY + L R + S+ WD+ A
Sbjct: 5 DRIYLMDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSVN------WDRQIPLAA 53
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
W RR+ KP+ + + G +F ML W N + +
Sbjct: 54 ------LW-EQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHLN 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLR 196
R HE ++ A + N + + + R+
Sbjct: 105 AKRMPLRQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRIA 164
Query: 197 N--------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ K G HPTQKP AL+ ++ + T GD++LD GSGT+ A
Sbjct: 165 DDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAI 224
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
+ R +IG E++Q Y +IA ++I N + +
Sbjct: 225 RTGRHYIGFEIEQAYCEIAERQIQEELECRNKVQEEKEIREEKQNQ 270
>gi|239907576|ref|YP_002954317.1| hypothetical protein DMR_29400 [Desulfovibrio magneticus RS-1]
gi|239797442|dbj|BAH76431.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 246
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 88/244 (36%), Gaps = 32/244 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY-----NL---QLNGQLYRPDHSLVDAVTDSWD 73
+ +G+++S+L +LP VDL+ DPPY NL Q+N +
Sbjct: 10 TLYQGDALSILRELPGDVVDLVLTDPPYSSGGLNLSARQVNPAAKYQNTGTRRVYPPMLG 69
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL C R+ + + V + + + +Q + IVW K
Sbjct: 70 DLKDQRSFVMWASLWLGECWRLARAGASCLVFSDWRQLPALTDAIQAAGWAWKGIIVWHK 129
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
PN R H DA + G
Sbjct: 130 ----PNARPSLGSFRH-------------------DAEFVIHGVKDRMQTHSHQCLPGVF 166
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+K+H T KP L+ + ++ + G +LDPF G GT+ + R FIG+E+
Sbjct: 167 TYAMDPRQKVHLTAKPVRLVKDL-LAVSPEGATVLDPFLGGGTTAMACLETGRRFIGVEL 225
Query: 254 KQDY 257
+Y
Sbjct: 226 STEY 229
>gi|198276345|ref|ZP_03208876.1| hypothetical protein BACPLE_02540 [Bacteroides plebeius DSM 17135]
gi|198270787|gb|EDY95057.1| hypothetical protein BACPLE_02540 [Bacteroides plebeius DSM 17135]
Length = 270
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 38/286 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I + + ++++ SVD I AD PY + L R + S+ WD+ F A
Sbjct: 5 DRIYLMDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSVN------WDRQIPFAA 53
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
W +R+ KP+ + + G +F ML W N + +
Sbjct: 54 ------LW-EQYQRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHLN 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLR 196
R HE ++ + + + + R+
Sbjct: 105 AKRMPLRQHEDILVFYKKQPVYHPQMTPCPPERRYHGRRKTEGFTNRCYGTMKLSPVRIA 164
Query: 197 N--------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ K G HPTQKP AL+ ++ + T GD++LD GSGT+ A
Sbjct: 165 DDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAI 224
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
+ R +IG E++Q Y +IA +RI N + +
Sbjct: 225 RTGRHYIGFEIEQAYCEIAERRIQEELECRNKAQEEKEIREEKQNQ 270
>gi|323964339|gb|EGB59821.1| DNA methylase [Escherichia coli M863]
Length = 227
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 60/253 (23%), Positives = 93/253 (36%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P VD I DPPY L G R +L TD W
Sbjct: 3 RFILGDCVRVMATFPDNVVDFIITDPPY---LVGFCDRSGRTLAGDRTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ I R + F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMYRVLKKDALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D G
Sbjct: 105 SAYVAYRHECAYILAKGRPALPQKPLPDVQGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP + L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVSSLQPLIESFTHPNAIVLDPFAGSGSTCVAALRSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|256367550|ref|YP_003108111.1| hypothetical protein YcdB [Escherichia coli]
gi|228480805|gb|ACQ42131.1| hypothetical protein YcdB [Escherichia coli]
Length = 227
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + G R ++ TD W
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRG---RQGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVQGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|314055173|ref|YP_004063511.1| putative DNA methylase [Ostreococcus tauri virus 2]
gi|313575064|emb|CBI70077.1| putative DNA methylase [Ostreococcus tauri virus 2]
Length = 305
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 60/298 (20%), Positives = 107/298 (35%), Gaps = 53/298 (17%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ I N + +++LP S+D++ DPPY L + + D +V + K
Sbjct: 3 LNTIELVNCLDGMKRLPENSIDMVCTDPPYFLDGLGNDWNKNKIDKKGASSVVGNLPKGM 62
Query: 77 SFE-----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
F+ + F RVLKP G S + ++ F I + + W
Sbjct: 63 KFDRKQSKKFHDFYLEVSKEIFRVLKPGGAFISFSSPRLYHSMTMAIEENGFEIRDMMAW 122
Query: 132 RKSNP----------------------------MPNFRGRRFQNAHETLIWASPSPKAKG 163
+ ++R + + A E + A +
Sbjct: 123 VYTQSQVKAFSQDHIIEKDKTKTCEEKDKLKEMCKDWRTPQLKPAIEPMCLAVKPIEG-R 181
Query: 164 YTFNYDAL---------KAANEDVQMRSDWL------IPICSGSERLRNKDGE-KLHPTQ 207
Y N++ + + + + + + + G H +
Sbjct: 182 YIDNFEKYGTGLLNTSDETKVDGKFPSNVMTVEEGVLDRVFLVKKPTKTEKGNFNTHLSV 241
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KP L+ ++ TK G ILDPF GSGT+ A K R +IG ++ Q+Y+DI+ KR+
Sbjct: 242 KPVELVEHLIQLFTKRGATILDPFMGSGTTAIAAVKCDRKYIGFDINQEYVDISNKRL 299
>gi|154174237|ref|YP_001407809.1| DNA methylase [Campylobacter curvus 525.92]
gi|153793065|gb|EAU00023.2| DNA methylase [Campylobacter curvus 525.92]
Length = 309
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 109/290 (37%), Gaps = 48/290 (16%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
N + I+E N + + G+ + +L+K+P + DLI PPY +
Sbjct: 2 NKIKISEKFNMSNKV--TVFNGDCLKLLQKIPDEFCDLIITSPPYCMG------------ 47
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH--------------N 110
A + D +F+ RVLK G+L YH
Sbjct: 48 -KAYENIHDDIETFK---NQQITIFDDIYRVLKVGGSLCWQIGYHVNKLELIPLDFYIYQ 103
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
IF + + N I+W + + + R F HET++W + K + +
Sbjct: 104 IFMGNSKKYEHPLVLRNRIIWTFGHGLNSLRR--FSGRHETILWFTKG-KEYSFNLDCIR 160
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKD-------------GEKLHPTQKPEALLSRIL 217
+ + SG+ +N + HP Q P A+ R++
Sbjct: 161 IPQRYPGKRYYKGKNKGKFSGNPLGKNPSDVWDIPNVKANHIEKTEHPCQFPIAIPQRLI 220
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ T I+ DPF GSGTSG + R FIG E++++Y DIA RI
Sbjct: 221 KALTPINGIVFDPFMGSGTSGVASILENRKFIGAEIQKEYFDIAKNRIQD 270
>gi|302651686|ref|YP_003829067.1| hemaglutinin-associated protein [Escherichia coli]
gi|302310089|gb|ADL13961.1| Hap [Escherichia coli]
Length = 227
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + +H I R + F + +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWHRIDRFMAAWKRAGFSVAGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A+ D L G
Sbjct: 105 SAYVAYRHECAYILAKGSPARPRNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|298373714|ref|ZP_06983703.1| DNA (cytosine-5-)-methyltransferase domain protein [Bacteroidetes
oral taxon 274 str. F0058]
gi|298274766|gb|EFI16318.1| DNA (cytosine-5-)-methyltransferase domain protein [Bacteroidetes
oral taxon 274 str. F0058]
Length = 628
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 60/301 (19%), Positives = 99/301 (32%), Gaps = 58/301 (19%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNG----------------------- 55
+ II+G +S L K VDL++ DPP+ +
Sbjct: 63 NTIIRGECLSACAYLKEKGIKVDLVYIDPPFASGADYAKNVYLRRNPKVAEAIKQAETEI 122
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D WDK E Y + L+A + V+ +++V +H +
Sbjct: 123 DSDEIRGFEEKMYGDVWDK----ERYLNWMYENLMAIKSVMSETASIYVHLDWHIGHYVK 178
Query: 116 TMLQ-NLNFWILNDIVWRKSNPMPNFR--GRRFQNAHETLIWASP---------SPKAKG 163
+L + + F+ + H+++ + S K
Sbjct: 179 ILLDEIFGEDNFQREIIWDIMVLSGFKTIASNWVRGHDSIFYYSKSEVRIFNKLIQPHKK 238
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERL-----------------RNKDGEKLHPT 206
+ N M + ER + + T
Sbjct: 239 EYLDSFNRVDENGRKYMVAHGFKRYLDEVERKGKPYGDVWNDLMSFQQQPTSAEKVDYAT 298
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
QKPEALL RI+ +S+ G +I D F GSG + VA KL R FI ++ + I+ A R+
Sbjct: 299 QKPEALLERIIKASSNEGMLIADFFGGSGVTATVAHKLGRRFIHCDIGINSIETARDRLR 358
Query: 267 S 267
Sbjct: 359 K 359
>gi|315619240|gb|EFU99816.1| DNA methylase family protein [Escherichia coli 3431]
Length = 227
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRFGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFGVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+ +VQ
Sbjct: 202 QQRLTAVQRAMQQ 214
>gi|46198349|ref|YP_004016.1| methyltransferase [Thermus thermophilus HB27]
gi|46195971|gb|AAS80389.1| methyltransferase [Thermus thermophilus HB27]
Length = 308
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 53/287 (18%), Positives = 91/287 (31%), Gaps = 47/287 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++ G++ VL LP SV L+ PPY + +EA
Sbjct: 22 HRLHVGDAREVLASLPEASVHLVVTSPPYWTLKRYEDTPG----------QLGHIEDYEA 71
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ R+L P G L ++ + R + + V + N
Sbjct: 72 FLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNL 131
Query: 141 RGRRFQNAHET-----------------------------LIWASPSPKAKGYTFNYDAL 171
+ + H L+ P K +
Sbjct: 132 NPIIW-HKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILMQRKPGGYRKPTQEQREKS 190
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ ED + G + K HP P L R++ + GD++LDPF
Sbjct: 191 RLPKEDFHRFFRQIWDDIPG-------ESTKDHPAPFPLELAERLVRMFSFVGDVVLDPF 243
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
G+GT+ A + R +G+E+ Y +A +R A P ++E+
Sbjct: 244 AGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAKEVPGFSLEVLD 290
>gi|154249220|ref|YP_001410045.1| DNA methylase N-4/N-6 domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154153156|gb|ABS60388.1| DNA methylase N-4/N-6 domain protein [Fervidobacterium nodosum
Rt17-B1]
Length = 284
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 63/293 (21%), Positives = 111/293 (37%), Gaps = 34/293 (11%)
Query: 5 NSLAINENQNSIF----EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
N L + +N+ IF + K KII + I+ + S+DLI PPYN+ ++ +
Sbjct: 9 NDLLLRQNEKKIFFETEDGKIKIIHDDFITT-NLIEENSIDLIITSPPYNVNIHYNSFSD 67
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF-------- 112
D +E Y FT WL ++KP+G + +
Sbjct: 68 D--------------IPYEKYTEFTEKWLKKAYSLVKPDGRMCLNIPLDKSKGREEAGFQ 113
Query: 113 ----RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
I + + + + + I+W + N + +A + A Y +
Sbjct: 114 SVYADIVNIAKKVGWKYFSTIIWNEGNISRRTAWGSWLSARAPYVIAPVETIVILYKEKW 173
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDII 227
+K D+ + +G + +K+ HP P L R + + D I
Sbjct: 174 RKIKEGESDITRE--EFMEWTNGLWTFSGESKKKVGHPAPFPIELPKRCIKLFSYTNDTI 231
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
LDPF GSG++ L R IG+E+ ++Y +AT R+ + +L
Sbjct: 232 LDPFLGSGSTLIACALLNRKGIGVEIDENYCKLATNRLKKEAHIDQRKLFEGD 284
>gi|300814334|ref|ZP_07094606.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511601|gb|EFK38829.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 305
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 70/305 (22%), Positives = 116/305 (38%), Gaps = 49/305 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN---LQLNGQLYRPDHSLVD---- 66
I +K+KII GN ++VL+KLP +S+ DPPYN + + Y + +
Sbjct: 1 MEIDNFKNKIITGNCLNVLKKLPDESIAGCITDPPYNYEFIGKDWNQYEIERRMEKVNSK 60
Query: 67 -----------------AVTDS---WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
V + + Y + + W R+LKP + V
Sbjct: 61 TSSTLVKNIPYGSGLSGGVRNKRWYEKNRKNILEYREWVKTWAKELYRILKPGAYVMVFN 120
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN------------------FRGRRFQNA 148
S I ++ F+ + IVWR+ + +P +RG
Sbjct: 121 STRTSAHIQVAFEDEGFYARDTIVWRRQSGIPKGLNAEKKLEKMGAKNPEIWRGWHSALR 180
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR--NKDGEKLHPT 206
+E N L + + E ++ +K+ H T
Sbjct: 181 NEWEAITVIQKPLINNYINTLTLYDVGLLKTESEEINGFQSNIIENIKRDSKNNTNTHIT 240
Query: 207 QKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
KP L+ +++ S +I++DPF GSGT+ AKKL +IGIE+ DY+ IA +R
Sbjct: 241 IKPLQLIEKLISMSIPIHKNNIVIDPFLGSGTTAVAAKKLGLEWIGIEINPDYVKIAEER 300
Query: 265 IASVQ 269
I ++
Sbjct: 301 IRIME 305
>gi|163858751|ref|YP_001633049.1| site-specific DNA-methyltransferase [Bordetella petrii DSM 12804]
gi|163262479|emb|CAP44782.1| site-specific DNA-methyltransferase [Bordetella petrii]
Length = 257
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 64/281 (22%), Positives = 99/281 (35%), Gaps = 43/281 (15%)
Query: 2 SQKNSLAINENQNSIFEWKDK-------IIKGNSISVLEKLPAKSVDLIFADPPYNL--Q 52
K ++ Q+ IF + + +G+ +++L L D + DPPY+ Q
Sbjct: 4 PIKRKRSVKRKQHPIFNNLNHVRISGADLYQGDCLAILPAL-DGPFDAVVTDPPYSSGGQ 62
Query: 53 LNGQLYRPDHSLVDAVTDS--WDKF----SSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
G S W F AY ++ WL C L G V
Sbjct: 63 SKGNRAGGTGSKYLNSGGESPWPDFAGDSKDQRAYLHWSTLWLALCYEKLTAGGLAIVFS 122
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + LQ F VW K+ ++G A + + Y+
Sbjct: 123 DWRQLPVTSDALQGAGFTWRGVGVWDKAASSRPYKGGFRAQAEYFVWGSKGQLAGDTYSA 182
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
G R++ + G+KLH KP L+ ++ + G
Sbjct: 183 ------------------------GVFRVQQRPGDKLHQVGKPLPLMDSLVAAV---GPR 215
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
ILDPF GSGT+G A +SF GIE+ Y IA R+ +
Sbjct: 216 ILDPFMGSGTTGVAALTQGKSFTGIELAGHYFQIAADRLRT 256
>gi|317476165|ref|ZP_07935417.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
gi|316907803|gb|EFV29505.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
Length = 280
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 62/286 (21%), Positives = 102/286 (35%), Gaps = 38/286 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D+I + + ++++ SVD I AD PY + L R + S WD+
Sbjct: 5 DRIYLMDCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSAN------WDRQ----- 48
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
T W RR+ KP+ + + G +F ML W N + +
Sbjct: 49 -IPLTALW-EQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHLN 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLR 196
R HE ++ + N + + + R+
Sbjct: 105 AKRMPLRQHEDILVFYKKQPVYHPQMTPCPSERRNHGRRKTEGFTNRCYGTMKLSPVRIA 164
Query: 197 N--------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ K G HPTQKP AL+ ++ + T GD++LD GSGT+ A
Sbjct: 165 DDKYPTSVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAI 224
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
+ R +IG E++Q Y +I +RI N + +
Sbjct: 225 RTGRHYIGFEIEQAYCEITERRIQEELECRNKAQEEKEIREEKQIN 270
>gi|22091198|ref|NP_666012.1| adenine methyltransferase [Natrialba phage PhiCh1]
gi|289594309|ref|YP_003482316.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
gi|6118090|gb|AAF04014.1|AF172444_1 adenine methyltransferase [Natrialba phage PhiCh1]
gi|289533406|gb|ADD07754.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
Length = 419
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 31/256 (12%)
Query: 18 EWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++ + I + +L SVDL+ DPPY + ++ S+ + T + D
Sbjct: 167 DVDHQVYFEDCIEGMSQRLEGDSVDLVLTDPPYGIDIDLSETLGSRSVQHSGTVAND--- 223
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + R RRV+KP G ++V S+ +L + F + N IVW K+ P
Sbjct: 224 DLDGALSVFRDAAKEMRRVVKPGGHVYVFASWKTYDLFRDILVDEEFTVRNCIVWCKTVP 283
Query: 137 MPNFR----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
G + HE +I+A+ D SG+
Sbjct: 284 NNQPNFGTGGTNWGLQHEFVIYATLDSPRPLKHTRPDI------------IVHKHSTSGN 331
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
E HPTQKP LL + S++PGD++LDPF GSG++ + + R IG E
Sbjct: 332 E----------HPTQKPVGLLEEFIEQSSQPGDVVLDPFAGSGSTAVASVQTDRECIGFE 381
Query: 253 MKQD-YIDIATKRIAS 267
++ D Y ++ +RI+
Sbjct: 382 LEGDVYQEVVDRRISE 397
>gi|325263278|ref|ZP_08130013.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. D5]
gi|324031671|gb|EGB92951.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. D5]
Length = 319
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 66/319 (20%), Positives = 103/319 (32%), Gaps = 85/319 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP +SV PPY + + + + E
Sbjct: 7 DTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDAQIGREDTPEQ 55
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG----------SYHNI------------------- 111
Y RRVL+ +GT W+ YH
Sbjct: 56 YIDRLTEVFRELRRVLRSDGTFWLNIADTYCGTGNKGYHADPKNPKGRNGQAVSIARQAA 115
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ +DI+W+K NPMP R +E + + S K
Sbjct: 116 GCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTKSKK 175
Query: 161 AK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------ 197
T + G R R+
Sbjct: 176 YFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEIPGQGKVQGLNRARSGSYYDEALMPTM 235
Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ H P L + + G ++LDPFFGSGT+GA AK+L R
Sbjct: 236 RNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAAKQLHR 295
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IGIE+ +Y +A RI
Sbjct: 296 HYIGIEINAEYCALARARI 314
>gi|238801657|ref|YP_002922713.1| gp41 [Burkholderia phage BcepIL02]
gi|237688032|gb|ACR15034.1| gp41 [Burkholderia phage BcepIL02]
Length = 310
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 54/294 (18%), Positives = 102/294 (34%), Gaps = 44/294 (14%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
++++ + L + S+ L+ PPYN+ + P +AY
Sbjct: 19 CQDNLAFMRPLKSGSMQLVVTSPPYNIGKKYEKRSP-----------------LDAYVQA 61
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYH----NIFRIGTMLQN----LNFWILNDIVWRKSNP 136
+ C R+L P G+L H IF + T+L + N +VW +
Sbjct: 62 QAQVISECVRLLSPRGSLCWQVGNHVQKGEIFPLDTVLYPVFREHGLKLRNRVVWHFEHG 121
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-----------L 185
+ R +ET++W + +
Sbjct: 122 L--HCSNRLSGRYETILWFTKGDDYVFNLDPIRVPSKYPGKKYFKGPKAGQLSCNPLGKN 179
Query: 186 IPICSGSERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
++N + HP Q P L+ R+++S T PGD + DP+ G G+S A K
Sbjct: 180 PGDVWVFPNVKNNHVEKTDHPCQFPVELVERLVLSLTNPGDAVFDPYMGVGSSVVAALKN 239
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE--PRVAFNLLVER 296
R G ++ ++Y++ A +R+ ++ L + P + +
Sbjct: 240 DRVGYGCDVVKEYVEAAWERVHQLRAG---TLQTRPMHKPVYDPTQPYGGHRRQ 290
>gi|300837035|ref|YP_003754089.1| hypothetical protein pKP048_p096 [Klebsiella pneumoniae]
gi|299474839|gb|ADJ18663.1| hypothetical protein [Klebsiella pneumoniae]
Length = 233
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I GN I V+ P ++VDLI DPPY L G R + VTD W + ++
Sbjct: 3 RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATL--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + ++ + R + F+ + +V+
Sbjct: 57 ---------EMYRVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVF---------- 97
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + + + A A L + G
Sbjct: 98 ----TKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----PYTGN 148
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
LHPTQKP L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y
Sbjct: 149 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 208
Query: 262 TKRIASVQ 269
T+R+A++
Sbjct: 209 TERLAAMH 216
>gi|315607455|ref|ZP_07882451.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
buccae ATCC 33574]
gi|315250887|gb|EFU30880.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
buccae ATCC 33574]
Length = 626
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 61/298 (20%), Positives = 111/298 (37%), Gaps = 56/298 (18%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRP------------------ 60
+ +++G +S L K VDL++ DPP+ +
Sbjct: 63 NLVLRGECLSACAYLKEKGVKVDLVYIDPPFASGADYAKKVYIRRNPRVAEAIKQAETEL 122
Query: 61 -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ D WDK E Y + L+A + V+ +++V +H +
Sbjct: 123 DSEELRNFEEKMYGDVWDK----ERYLNWMYENLVAIKAVMSDTASIYVHLDWHIGHYVK 178
Query: 116 TMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---------------S 158
++ + N+++W N M R N H++L + S +
Sbjct: 179 ILMDEVFGEDKFRNEVIWYYYNKMQGNVNRFASN-HDSLFYYSKSDEFTYNQVKEKRAET 237
Query: 159 PKAKGYTFNYDALK----AANEDVQMRSDWLIPICSGSERL-----RNKDGEKLHPTQKP 209
K ++ + K N+ + D R+ +K+ + TQKP
Sbjct: 238 IKQIKRIWDKETQKLVNAKDNQGKVIYVDSDEFTIDDVWRMSMLQPADKNEPVGYATQKP 297
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
EALL RI+ +S+ ++ D F GSG + AVA +L R FI ++ + I+ R+
Sbjct: 298 EALLERIIKASSNEDMLVADFFGGSGVTAAVANRLGRRFIHCDIGINSIETTRDRLRK 355
>gi|330012916|ref|ZP_08307529.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
gi|328533644|gb|EGF60352.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
Length = 258
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I GN I V+ P ++VDLI DPPY L G R + VTD W + ++
Sbjct: 28 RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATL--- 81
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + ++ + R + F+ + +V+
Sbjct: 82 ---------EMYRVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVF---------- 122
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + + + A A L + G
Sbjct: 123 ----TKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----PYTGN 173
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
LHPTQKP L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y
Sbjct: 174 TLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233
Query: 262 TKRIASVQ 269
T+R+A++
Sbjct: 234 TERLAAMH 241
>gi|293402433|ref|ZP_06646569.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291304096|gb|EFE45349.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 318
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 65/322 (20%), Positives = 105/322 (32%), Gaps = 91/322 (28%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
DKI G+S+ VL+ LP +D PPY + + ++ E
Sbjct: 6 DKIYCGDSLQVLQTLPDNCLDCCVTSPPYYALRDY-----------GTDGQIGREATPEE 54
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
Y + A +RVL P GT W+ +
Sbjct: 55 YVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRAP 114
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ + I+W K NPMP R +E + +
Sbjct: 115 GCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNPMPESTRDRPTRCYEYVFLLTK--- 171
Query: 161 AKGYTFNYDALKAA--------------NEDVQMRSDWLIPICSGSERLRNK-------- 198
+K Y +++ A+ + + R R K
Sbjct: 172 SKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEMI 231
Query: 199 ---------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
H P L +++ G I+LDPF GSGT+ A AK
Sbjct: 232 SPVRSRRNVWQINTTSYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAKS 291
Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
L R +IGIE+ +Y +A +RI
Sbjct: 292 LSRRYIGIEINPEYCTLAKQRI 313
>gi|161521391|ref|YP_001584818.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189352441|ref|YP_001948068.1| putative adenine-specific DNA-methyltransferase [Burkholderia
multivorans ATCC 17616]
gi|327198018|ref|YP_004306387.1| gp20 [Burkholderia phage KS5]
gi|160345441|gb|ABX18526.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
17616]
gi|189336463|dbj|BAG45532.1| putative adenine-specific DNA-methyltransferase [Burkholderia
multivorans ATCC 17616]
gi|310657152|gb|ADP02267.1| gp20 [Burkholderia phage KS5]
Length = 249
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 62/257 (24%), Positives = 99/257 (38%), Gaps = 32/257 (12%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVT 69
+ ++I ++ SVL LP +DL F DPPY+ R +
Sbjct: 8 DLINRIHLADATSVLRALPDGCIDLTFTDPPYSSGGTTSASRSQTPSSKYIGGDVKTVYP 67
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
+ ++ + WL RV + L + + + +Q F
Sbjct: 68 EFQHDSKDQRSWTFWCMTWLAEVYRVSRNEAHLVCFVDWRQLPSLTDAIQAAGFTWRGVA 127
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
VW K+N R F E L+WA+ + DV + +
Sbjct: 128 VWDKTNGRTRPRAGGFAQQAEFLVWATKGAVRRA-------------DVYLPGVF----- 169
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
SERL + K H T+KP L ++ + G ++LDPF GSGT AK+ ++I
Sbjct: 170 --SERLAHP---KRHMTEKPAQLAREVVRLA-PAGGVVLDPFTGSGTFLDAAKQGGLNWI 223
Query: 250 GIEMKQDYIDIATKRIA 266
G E++ Y +AT R+A
Sbjct: 224 GCELEPAYHQVATARLA 240
>gi|167042742|gb|ABZ07462.1| putative DNA methylase [uncultured marine crenarchaeote
HF4000_ANIW133O4]
Length = 240
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 4/236 (1%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
++ +P + +DL+ DPP+ + + + + ++ E Y FT AW+
Sbjct: 1 MKAIPDEKIDLVLTDPPFAINFKAKKANYNRNASRVLSGY--NEIKVEDYYNFTNAWMCE 58
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RVLK +G+++V ++N+ I T L + F +N I+W+ + + + H
Sbjct: 59 VYRVLKKSGSMYVFSGWNNLKDILTALDDNGFTTINHIIWKYQFGVVTAKKFVTSHYHCL 118
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ + ++ + + + D + PT+ P
Sbjct: 119 FVCKDDKKIKFFPYSRFKKNAKTSDGRSLHYKDKEDVWIINREYWTGDDKT--PTKLPAE 176
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
++ +IL S++ D++LDPF GSG ++K L R ++G E+ + Y D A KR+
Sbjct: 177 IIKKILQYSSEKMDLVLDPFLGSGQVAVISKMLGRRYLGFEIVKQYYDFANKRLQK 232
>gi|307944128|ref|ZP_07659469.1| DNA methylase [Roseibium sp. TrichSKD4]
gi|307772474|gb|EFO31694.1| DNA methylase [Roseibium sp. TrichSKD4]
Length = 269
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 56/251 (22%), Positives = 93/251 (37%), Gaps = 30/251 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF--- 78
++ + ++++ L + D + DPPY+ R S + K+ F
Sbjct: 34 QLFQQDALTWLHDQSSNQFDALVTDPPYSSGGLHSGSRTADSANRKYVNDEKKYPEFSGE 93
Query: 79 ----EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+Y ++ WL R+LKP V + + + +Q F + W K+
Sbjct: 94 NRDQHSYMLWSTLWLTEAHRILKPGSPFLVFTDWRQLSVMINAVQAAGFTYRGCVPWDKT 153
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+GR Q A L + + G
Sbjct: 154 EACRPQKGRFRQQAEFVLWG-------------SKGAWHGKDGPTYPGVIRCSVMQG--- 197
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
G KLH T KP L+ ++ P +LDPF GSG++G A + R F+G E +
Sbjct: 198 -----GPKLHTTGKPVPLMDALVQVC--PEGTVLDPFAGSGSTGVAALRSGRRFVGCERE 250
Query: 255 QDYIDIATKRI 265
Q Y DIA++R+
Sbjct: 251 QAYFDIASERL 261
>gi|28864482|gb|AAO48713.1| BstYI methyltransferase [Geobacillus stearothermophilus]
Length = 318
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 61/278 (21%), Positives = 108/278 (38%), Gaps = 51/278 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
G+++ L+ LP V L PPYN+ + ++ +S E Y
Sbjct: 23 FHNGDALEFLKTLPDNLVKLAITSPPYNVGKSYEVK-----------------TSVEEYL 65
Query: 83 AFTRAWLLACRRVLKPNGT-LWVIGSYHN-------IFRIGTMLQNLNFWILNDIVWRKS 134
A A + RV+ +G+ W +G+Y N + + + N I+W
Sbjct: 66 ATQEAVIEELIRVVDDHGSICWQVGNYVNKGEIFPLDIFYYQIFKKHGLKLRNRIIWHFG 125
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKA----------------KGYTFNYDALKAANEDV 178
+ + +RF +ETL+W + S + Y + + N
Sbjct: 126 HGL--HAKKRFSGRYETLLWFTKSDDYTFNLDPVRVPAKYPGKRHYKGDKKGELSGNPKG 183
Query: 179 QMRSD--------WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ SD W + N + +HP Q P L+ R +++ T D +LDP
Sbjct: 184 KNPSDVWEFVVQEWDKELWEIPNVKANHPEKTIHPCQYPIELVERCVLALTNENDFVLDP 243
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ G G+S A K R IG++ +++Y++I +RI
Sbjct: 244 YAGVGSSLIGALKHGRKAIGVDKEKEYVEIGKQRIKDF 281
>gi|148556255|ref|YP_001263837.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
wittichii RW1]
gi|148501445|gb|ABQ69699.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
Length = 314
Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 72/289 (24%), Positives = 114/289 (39%), Gaps = 58/289 (20%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I+ G++ + L+ +PA S + PPY Q + V +A
Sbjct: 32 DLIVHGSARAALDAMPAGSAHVAVTSPPYFGQRDY-----------GVAGQIGIEPDPDA 80
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFWILNDIVWR 132
Y A A A RRVL+ +GTLW+ +R+ L + + +DIVW
Sbjct: 81 YVAALVAVFRALRRVLRDDGTLWLNLGDKYAGGALLGMPWRVALALVADGWRLRSDIVWH 140
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG- 191
K N MP+ RR + HE + S + Y ++ DA++ + S
Sbjct: 141 KPNAMPHSNKRRPTHDHEYVFLLSKTDD---YRYDADAIREPHRTFGPDSRMRGGRGHFG 197
Query: 192 -----SERLRNK------------------------------DGEKLHPTQKPEALLSRI 216
E+ +N+ H P AL++
Sbjct: 198 RRGGTPEQGKNRGDANLHDGRWDQAFHPLGRNRRTVWSVPLGKYRDAHFAVFPPALITPC 257
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ + + G ++LDPFFG+GT+G VA+ R F+GIE+ DY +A RI
Sbjct: 258 IRAGSPEGGVVLDPFFGAGTTGLVARAEGRRFVGIELNPDYCAMARDRI 306
>gi|150021358|ref|YP_001306712.1| DNA methylase N-4/N-6 domain-containing protein [Thermosipho
melanesiensis BI429]
gi|149793879|gb|ABR31327.1| DNA methylase N-4/N-6 domain protein [Thermosipho melanesiensis
BI429]
Length = 255
Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 58/257 (22%), Positives = 104/257 (40%), Gaps = 27/257 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I + + ++P S+DLI PPYN+ + + +++ Y
Sbjct: 11 KLINEDFLKT--RIPENSIDLIVTSPPYNVGIPYNSHNDK--------------ITYKDY 54
Query: 82 DAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+T WL ++ KP+G + + G I + + + + + I+W +
Sbjct: 55 LIWTEKWLTKAFQLSKPDGRMCLNIPLDKNKGGQQSVYADIVYLAKKIGWKYHSTIIWNE 114
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N + +A + A Y + K D+ I +G
Sbjct: 115 GNISRRTAWGSWLSASAPYVIAPVETIVILYKETWKKQKRGKSDILRE--EFIEWTNGLW 172
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ +K+ HP P L R + + GD+ILDPF GSGT+ A +L+R IG+E
Sbjct: 173 TFSGESKKKIGHPAPFPFELPKRCIKLFSYVGDVILDPFLGSGTTAIAAFRLKRKVIGVE 232
Query: 253 MKQDYIDIATKRIASVQ 269
+ + Y ++A KRI+
Sbjct: 233 IDKKYFELAIKRISKQC 249
>gi|126178468|ref|YP_001046433.1| DNA methylase N-4/N-6 domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125861262|gb|ABN56451.1| DNA methylase N-4/N-6 domain protein [Methanoculleus marisnigri
JR1]
Length = 326
Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 15/256 (5%)
Query: 21 DKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ G+ I+ +P SVDLI DPPY + + + V + +S
Sbjct: 9 NIFYNGDCIAGARAHIPDDSVDLIVTDPPYGINGDRLHQHYNRDEAFVVDGYVEVPAS-- 66
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y F++ W+ R+L+P G+++++ Y N++ I L+ + +N I+WR S +
Sbjct: 67 DYGEFSQRWIQEAERILRPGGSIYIVSGYTNLYHILHALRGTHLREVNHIIWRYSFGV-- 124
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-----DVQMRSDWLIPICSGSER 194
+ R++ ++H +++ + TFN ++ E D C E
Sbjct: 125 YTSRKYVSSHYHVLFYEKPGGDR--TFNLESRYGTGERGPKNGSLNYRDREDVWCINREY 182
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ K + P LL +++ S+ GD++ D F G T+ VA L R G E+
Sbjct: 183 KPGQAKNK---NELPTELLVKMIQYSSNEGDLVCDMFLGGFTTAKVAVGLNRRATGFEIS 239
Query: 255 QDYIDIATKRIASVQP 270
+ D+ + +P
Sbjct: 240 ERVFDLKIAELRDTRP 255
>gi|118575712|ref|YP_875455.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194233|gb|ABK77151.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 288
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 59/277 (21%), Positives = 98/277 (35%), Gaps = 48/277 (17%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++I G++ +VL KL SVDL PPY+ + + +D S
Sbjct: 30 RNRIYCGDAAAVLAKLGDGSVDLAVTSPPYDNLRDY----------QGYSFDFDGICS-- 77
Query: 80 AYDAFTRAWLLACRRVLKPNGT-LWVIGSY----HNIFRIGTMLQNLNFWILNDIVWRKS 134
RVL+ G +WV+G ++ L + +
Sbjct: 78 -----------QLYRVLRKGGVLVWVVGDRIAGGRSLTSFRQGLAFQDLGFSMHDIMIYR 126
Query: 135 NP-MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P R + N +E + S ++ E +
Sbjct: 127 KKNTPFMRSNAYTNCYEFMFVLSKGRPRVFRPIMEKTKRSGMEMLVHNKKSDGINKKTLA 186
Query: 194 RLRNKDGEKL-------------------HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
L+ + HP PE L ++S +KPGD++LDP GS
Sbjct: 187 ELKPEKTRTNIWDYAVGLGGTTCDRFAFKHPAMFPEKLAQDHILSWSKPGDLVLDPMCGS 246
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
GT+ +A R +IGIE+ ++Y IA +R+A +Q
Sbjct: 247 GTTCKMAAANGRDYIGIEISKEYAAIARRRMAGIQKR 283
>gi|119357320|ref|YP_911964.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
phaeobacteroides DSM 266]
gi|119354669|gb|ABL65540.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
DSM 266]
Length = 284
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 70/287 (24%), Positives = 107/287 (37%), Gaps = 56/287 (19%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
E + + G+ +LE LP +SVDLIF PPY Q
Sbjct: 1 MEIRTDLYLGDCREILENLPDESVDLIFTSPPYADQRKQTYG----------------GF 44
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIG---------SYHNIFRIGTMLQNLNFWILN 127
+ Y A+ RVLKP GT + S + + I M + +
Sbjct: 45 HPDDYVAWFLPISFQLMRVLKPTGTFVLNIKEKVLNGERSTYVMELILEMRKQQGWLWTE 104
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---------- 177
+ +W K N P RF+++ E LI + K + N DA+ D
Sbjct: 105 EFIWHKKNCYPGKWPNRFRDSWERLIQFNK---RKQFYMNQDAVMVPMGDWSRTRLKNLS 161
Query: 178 ----------------VQMRSDWLIPICSGSE--RLRNKDGEKLHPTQKPEALLSRILVS 219
+ + + + L + K H PE L +
Sbjct: 162 ETDKMRDESKVGSGFGKNISNWLQRDMAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKL 221
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
TK GD +LDPF GSGT+ AVAK+++R+ IGIE+ +Y ++ +
Sbjct: 222 FTKEGDTVLDPFMGSGTTNAVAKRMKRNSIGIEIMTEYYEMVKNELK 268
>gi|154150012|ref|YP_001403630.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Methanoregula boonei 6A8]
gi|153998564|gb|ABS54987.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
Length = 256
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
II G+ S +P + +DL+ PPYN+ + + D +++ Y
Sbjct: 14 IINGDIFST-RAIPTQGIDLVVTSPPYNVDIRYHSH--------------DDGLTYDEYL 58
Query: 83 AFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
AF++ W+ C LKP+G + I N ++ +L S + N
Sbjct: 59 AFSKRWMKRCFGWLKPDGRFCLNIPLDKNKGGQQSVGADLTAIAKECGFAYHSTIIWNEG 118
Query: 142 GRRFQNAHETLIWASPSPKAKG---YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+ A + AS Y + + L
Sbjct: 119 NISRRTAWGSWASASAPYVIAPVELIVVLYKDSWKKTSGSRQSDITREEFMEWTNGLWTF 178
Query: 199 DGEK----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+GE+ HP P L R + + GD +LDPF GSG++ A + R IG+E+
Sbjct: 179 NGERKTRIGHPAPFPVELPLRCMKLFSFVGDTVLDPFMGSGSTLVAASRCDRKAIGVEID 238
Query: 255 QDYIDIATKRIA 266
Y ++A KRIA
Sbjct: 239 AHYCELAAKRIA 250
>gi|262042203|ref|ZP_06015376.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259040525|gb|EEW41623.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 258
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 61/252 (24%), Positives = 95/252 (37%), Gaps = 42/252 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I GN I V+ P +VDLI DPPY + D + + +
Sbjct: 28 RFILGNCIDVMRGFPDHAVDLIVTDPPYLIG---------------FRDRQGRTIAGDKT 72
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + S++ + R + F+ + +V+ K+
Sbjct: 73 DEWLQPACHEMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKTYASNRRN 132
Query: 142 GRRFQ----NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
R + HE + D L
Sbjct: 133 ARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----------------------P 169
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G LHPTQKP L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y
Sbjct: 170 YTGNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQY 229
Query: 258 IDIATKRIASVQ 269
T+R+A++
Sbjct: 230 HRAGTERLAAMH 241
>gi|15020663|emb|CAC44538.1| methyltransferase [Lactococcus lactis subsp. cremoris]
Length = 282
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 68/294 (23%), Positives = 115/294 (39%), Gaps = 43/294 (14%)
Query: 4 KNSLAINEN---QNSIFEWKDKIIKGNSISVLEKLPAKS-VDLIFADPPYNLQLNGQLYR 59
N +AI E + + + + +S+ +E L K V+L PPYN++ +
Sbjct: 5 NNKIAIIEKVLGKPYYKDERTILYNIDSLKGMELLSHKKLVNLTVTSPPYNIRKEYE--- 61
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
K S E Y +++ W+ + NG+ W+ Y I G +
Sbjct: 62 --------------KVMSVEDYISWSENWINLVYENTEENGSFWLNVGYMPIKDKGKAIP 107
Query: 120 NLNFWILNDIVWRKSNPMPNFR-----GRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ + N+ + +E ++W + YTFN D ++
Sbjct: 108 IPYLLWDKTKFFMIQELIWNYSAGVAAKKSLSPRNEKILWYVKNQN--KYTFNLDDIRDP 165
Query: 175 N--------EDVQ-------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
N SD S + R+ HP Q P L RI+++
Sbjct: 166 NVKYPNQKKNGKIRVNPLGKNPSDVWQIPKVTSGKNRSAKERVPHPAQTPIELFKRIILA 225
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
S+K D++LDPF GSGT+ ++K L R +G E+ +DY+DIA RI + +
Sbjct: 226 SSKKNDLVLDPFIGSGTTAVISKSLDRYCLGFELNKDYLDIAIDRIKNEKIDQQ 279
>gi|194439829|ref|ZP_03071894.1| DNA methylase family protein [Escherichia coli 101-1]
gi|194421219|gb|EDX37241.1| DNA methylase family protein [Escherichia coli 101-1]
Length = 227
Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFILGDCVRVMATFPDNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|312623547|ref|YP_004025160.1| DNA methylase N-4/N-6 domain-containing protein
[Caldicellulosiruptor kronotskyensis 2002]
gi|312204014|gb|ADQ47341.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 323
Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 57/268 (21%), Positives = 111/268 (41%), Gaps = 27/268 (10%)
Query: 11 ENQNSIFEWKDKI--IKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
E N F++++KI + + ++V L ++LI PPYN+ ++ +
Sbjct: 62 EEPNLKFDFENKIKIFENDFLTV--DLSPWRGKINLIVTSPPYNVGIDYNSH-------- 111
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWI 125
D SS+E Y F+R WL +L +G + + I N + ++ ++
Sbjct: 112 ------DDSSSYEDYLEFSRKWLTKAYDLLADDGRMCLNIPLDKNKNGLRSVYADIVTIA 165
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-----KAKGYTFNYDALKAANEDVQM 180
+S + N + + A + + AS + + + + + +
Sbjct: 166 KEVGFKYQSTIIWNEQNISRRTAWGSWLSASAPYVIAPVETIVLLYKHQWKRKSKGTSTI 225
Query: 181 RSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ I +G ++ +K+ HP P L R + + D +LDPF GSG++
Sbjct: 226 EKEQFIEWTNGVWTFNGENRKKIGHPAPFPVELPRRCIKLFSFEEDTVLDPFLGSGSTLI 285
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
A + R IG+E+ Y+++A KRI
Sbjct: 286 AALEEGRQGIGVEIDSSYVELAIKRIME 313
>gi|317052819|ref|YP_004119585.1| DNA methylase N-4/N-6 domain-containing protein [Pantoea sp. At-9b]
gi|316953559|gb|ADU73029.1| DNA methylase N-4/N-6 domain protein [Pantoea sp. At-9b]
Length = 214
Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 41/244 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + G+S+ V+ P S+D I DPPY L G R S+ + V W +S
Sbjct: 3 RFMHGDSVQVMGGFPDNSIDFILTDPPY---LVGFKDRSGRSIANDVNSEWVLPAS---- 55
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK N ++ + + F ++ +V+ K +
Sbjct: 56 --------QQMYRVLKTNSLAVSFYGWNRVDIFMQAWKAAGFRVVGHLVFTKPYAS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE+ + A D + G
Sbjct: 105 SAFVGYQHESAYVLAKGRPALPRNPLPDVMPWQ-----------------------YTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP ++L ++ S T+PGD++LDPF GSG++ A + R +IGIE+ + Y A
Sbjct: 142 RHHPTEKPVSILRPLIESFTQPGDLVLDPFAGSGSTCVAADQCGRRWIGIELMEQYHTAA 201
Query: 262 TKRI 265
+R+
Sbjct: 202 LRRL 205
>gi|328954138|ref|YP_004371472.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
gi|328454462|gb|AEB10291.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 298
Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 66/284 (23%), Positives = 106/284 (37%), Gaps = 45/284 (15%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ N + + ++++II +S + ++P S+ L+ PPYN
Sbjct: 32 LPPHNGEDSISDNDFPVPYENQII-AHSSENMVEIPDNSLHLMITSPPYN---------- 80
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR------- 113
VT +D+ S E Y R RVL G V + N+ R
Sbjct: 81 -------VTKEYDENLSLEEYLQLLRMVFSETYRVLVNGGRACVNIA--NLGRRPYLPLS 131
Query: 114 --IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA---------HETLIWASPSPKAK 162
I TM+ ++ F + +I+W K + HE ++ S +
Sbjct: 132 DFISTMMIDIGFRMRGEIIWNKGAGAGVSMAWGSWQSASNPVLRDVHEYIMVFSKGAFMR 191
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
N + + + E + + HP P L R++ T
Sbjct: 192 QKPENRENTISREQ---FMEWTKSVWTMNPESAK----KVEHPAPFPVELPYRLIQLYTF 244
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
GD+ILDPF GSGT+G A K R +IG E Y+ +A +RIA
Sbjct: 245 KGDVILDPFMGSGTTGIAALKADRKYIGYENNPKYVKLAEERIA 288
>gi|152982010|ref|YP_001354391.1| phage related DNA methyltransferase [Janthinobacterium sp.
Marseille]
gi|151282087|gb|ABR90497.1| phage related DNA methyltransferase [Janthinobacterium sp.
Marseille]
Length = 423
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 92/255 (36%), Gaps = 38/255 (14%)
Query: 21 DKIIKGN-----SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWD 73
+++ G+ L L + VD++F DPPYN+ A+ + D
Sbjct: 173 HRLLCGDSTKTECFEQL--LQGEQVDMVFTDPPYNVNYANTAKDKMRGTNRAILNDNLGD 230
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F F A + CR G ++V S + + + + ++W K
Sbjct: 231 GFYDFL--LAALTPTIANCR------GGIYVAMSSSELDVLQSAFREAGGKWSTFVIWAK 282
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + Y + A + D W
Sbjct: 283 NTFTLGRS------------DYQRQYEPILYGWPEGATRHWCGDRDQSDVWQ-------- 322
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
++ LHPT KP L+ R + +S+ PG+++LDPF GSGT+ A+K R IE+
Sbjct: 323 -IKKPHKNDLHPTMKPVELVERAIRNSSHPGNVVLDPFGGSGTTLIAAEKSGRLARLIEL 381
Query: 254 KQDYIDIATKRIASV 268
Y+D+ +R
Sbjct: 382 DPKYVDVIVRRWQDW 396
>gi|157149426|ref|YP_001451454.1| putative methylase [Escherichia coli E24377A]
gi|157076593|gb|ABV16305.1| DNA methylase family protein [Escherichia coli E24377A]
Length = 227
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFILGDCVRVMATFPDNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|222053688|ref|YP_002536050.1| DNA methylase N-4/N-6 domain protein [Geobacter sp. FRC-32]
gi|221562977|gb|ACM18949.1| DNA methylase N-4/N-6 domain protein [Geobacter sp. FRC-32]
Length = 300
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/281 (23%), Positives = 110/281 (39%), Gaps = 56/281 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ G+ L +LP K PPY + D + E Y
Sbjct: 24 IVTGDVRQRLSELPEKMFRCCVTSPPYWGLRDY-----------GAEDQIGSEMTVEEYI 72
Query: 83 AFTRAWLLACRRVLKPNGTLWV-IGSYHNI------------------------------ 111
+ A RRVL +GT W+ IG +
Sbjct: 73 SDLTAVFREVRRVLADDGTFWLNIGDSYTSGNRTWRDPDKKNPARGMTYRAPTPEGLKPK 132
Query: 112 ------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+++ LQ +++ +DI+W K N P R +HE + + ++ Y
Sbjct: 133 DLIGIPWKLAFALQLDGWYLRSDIIWNKPNCQPESVKDRPTRSHEYVFLLTK---SEKYF 189
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+N++A++ ++ + + + H P L+ L++ ++PGD
Sbjct: 190 YNWEAVRE-----PAKTTKHYRSKRTVWDINTEPFSEAHFAVFPPGLVEPCLMAGSEPGD 244
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
ILDPFFGSGT G V +L R +G+E+K +Y++IA KR+
Sbjct: 245 FILDPFFGSGTVGVVCLRLGRKCVGVELKPEYVEIAKKRLQ 285
>gi|167757769|ref|ZP_02429896.1| hypothetical protein CLOSCI_00100 [Clostridium scindens ATCC 35704]
gi|167664651|gb|EDS08781.1| hypothetical protein CLOSCI_00100 [Clostridium scindens ATCC 35704]
Length = 293
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/296 (21%), Positives = 105/296 (35%), Gaps = 62/296 (20%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP++SV+ PPY + + + + E
Sbjct: 4 DVIINRDALYALRELPSESVNCCVTSPPYYGLRDY-----------GLDAQIGREDTPEQ 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN-----------------IFRIGTMLQNLNF 123
Y RRVLK +GTLW+ + + + L++ +
Sbjct: 53 YIGRLVEVFRELRRVLKDDGTLWLNIADTYCGTGMKAGCKQKDLIGIPWLLAFALRSDGW 112
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG----------------YTFN 167
++ +DI+W K NPMP R +E + + S K Y
Sbjct: 113 YLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTKSKKYYYDAAAIAEPIAPGTAARYRQG 172
Query: 168 YDALKAANED-----------VQMRSDWLIPICSGSERLRNK-------DGEKLHPTQKP 209
A E+ + + R + + H P
Sbjct: 173 RGAGHKYAEEVPGQGKVQGINKTRSGGYYDDALMPTTRNKRDVWLINTVPYKGGHFAAYP 232
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
L +++ G ++LDPFFGSGT+G AK L R +IGIE+ Y +A RI
Sbjct: 233 PKLAETCILAGCPKGGVVLDPFFGSGTTGLAAKSLDRRYIGIELNAGYCALAGARI 288
>gi|298372695|ref|ZP_06982685.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
str. F0058]
gi|298275599|gb|EFI17150.1| DNA (cytosine-5-)-methyltransferase [Bacteroidetes oral taxon 274
str. F0058]
Length = 249
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 24/256 (9%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKFSSF- 78
+KI + + L ++P S+DL+ PPYN+ L +V + ++ F
Sbjct: 5 NKIYNESCLETLSRIPDNSIDLVITSPPYNMNLRIRNGKYCSRQIVKEFSTKYENFDDNI 64
Query: 79 --EAYDAFTRAWLLACRR--VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
E Y F L R + V GS IF ++ L+ ++ + I+W K
Sbjct: 65 PIEEYYKFHFKVLKELLRTSNIIFYNIQIVTGSKRAIF---KIIGELSDYLKDIIIWDKG 121
Query: 135 NPMPNFRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P E ++ + ++ + ++ +
Sbjct: 122 YAQPAMAQNVLNRRTELILIFDAKDAISRQFKKANFKRGTLDD------------LWLIK 169
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R + H PE L+ I+ + + GD+I DPF G+GT+ VAK L R+++G E+
Sbjct: 170 RGKKI--TSSHSAVFPEELVKNIIENFSDEGDLIYDPFMGTGTTAYVAKLLNRNYLGSEL 227
Query: 254 KQDYIDIATKRIASVQ 269
Y ++ KR++ ++
Sbjct: 228 TSRYYEVINKRLSELK 243
>gi|309774777|ref|ZP_07669799.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
3_1_53]
gi|308917462|gb|EFP63180.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
3_1_53]
Length = 299
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 74/296 (25%), Positives = 123/296 (41%), Gaps = 49/296 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
+ II GNSI ++ + ++SV LI +D PY + L+ L+ +S + + + K F
Sbjct: 4 NSIICGNSIEEIKNIDSESVHLILSDIPYGISLDTWDILHNNTNSSLLGTSPAQKKSPVF 63
Query: 79 E------------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ Y + W RVLKP + +V R +++
Sbjct: 64 KKRGKPLNGWSEADKNMPIEYYNWCSTWAEEWLRVLKPGASCFVFAGRRFSHRCICAMED 123
Query: 121 LNFWILNDIVWR--------KSNPMPNFRGRRFQNAHET---------------LIWASP 157
F + I W ++ + R +NA + L + P
Sbjct: 124 AGFIFKDMIAWEKDAAAHRAQNVKVVFERRGDNENATKWEGWKLGNLRPLFEPILWFMKP 183
Query: 158 SPKAKGYTFNY--DALKAANEDVQ---MRSDWLIPICSGSERLR-NKDGEKLHPTQKPEA 211
P T N ++ NE+ ++ I ICS R + ++D LHP QKP A
Sbjct: 184 YPIGGTLTDNIRLHSVGGYNEEYFKNNPLNNSGIEICSNIIRCKTSQDDRGLHPAQKPVA 243
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
L+ ++ +T G +ILDPF G G++ AK L R +IGIE+ +Y I ++R+
Sbjct: 244 LMEFLINLTTVEGQVILDPFCGCGSTLVAAKNLNREYIGIELNPEYCKIISERLEE 299
>gi|170730599|ref|YP_001776032.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
gi|167965392|gb|ACA12402.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
Length = 243
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 32/253 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSWDK 74
+G+++ +L + + +VD + DPPY + Y + A D
Sbjct: 12 HEGDALRLLCDIDSANVDAVITDPPYCSGAMRMSDRFKPTKRKYINSTTKHIAPDFDCD- 70
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F + A++ WL CRRV +P G L V + + + +Q+ + +VW K+
Sbjct: 71 FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKT 130
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
R A + + K +T G
Sbjct: 131 PACRPQLVRFRSQAEFIVWASCGLMNPKAHT---------------------VTPVGVFT 169
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
EK H KP AL+ ++ P ILDPF GSGT+G A + FIG+E+
Sbjct: 170 TGTAPREKRHQVGKPLALMEHLIKIV-PPTSTILDPFAGSGTTGVAALRAGHRFIGMELS 228
Query: 255 QDYIDIATKRIAS 267
Y D+ +R+A
Sbjct: 229 PWYCDVTKQRLAD 241
>gi|266622751|ref|ZP_06115686.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
13479]
gi|288865516|gb|EFC97814.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
13479]
Length = 318
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/322 (19%), Positives = 104/322 (32%), Gaps = 91/322 (28%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
DKI G+S+ VL+ LP +D PPY + + ++ E
Sbjct: 6 DKIYCGDSLQVLQTLPDNCLDCCVTSPPYYALRDY-----------GTDGQIGREATPEE 54
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
Y + A +RVL P GT W+ +
Sbjct: 55 YVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRAP 114
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ + I+W K N MP R +E + +
Sbjct: 115 GCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNAMPESTRDRPTRCYEYVFLLTK--- 171
Query: 161 AKGYTFNYDALKAA--------------NEDVQMRSDWLIPICSGSERLRNK-------- 198
+K Y +++ A+ + + R R K
Sbjct: 172 SKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEMI 231
Query: 199 ---------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
H P L +++ G I+LDPF GSGT+ A AK
Sbjct: 232 SPVRSRRNVWQINTASYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAKS 291
Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
L R ++GIE+ +Y +A +RI
Sbjct: 292 LSRRYVGIEINPEYCTLAKQRI 313
>gi|191166264|ref|ZP_03028097.1| DNA methylase family protein [Escherichia coli B7A]
gi|190903691|gb|EDV63407.1| DNA methylase family protein [Escherichia coli B7A]
Length = 227
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ TD W
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|326939606|gb|AEA15502.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 326
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 71/328 (21%), Positives = 114/328 (34%), Gaps = 89/328 (27%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+K+ G+ + VL+ P V + PPY + V ++ E
Sbjct: 3 LNKVYPGHCLDVLKTFPDNFVSTVVTSPPYWGLRDY-----------GVDGQIGLEATVE 51
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSY--------HN--------------------- 110
Y + + +RVLK +GTLW+ N
Sbjct: 52 EYVSNLVSVFREVKRVLKDDGTLWLNLGDVYAGSGRGRNADGKGNPGNNHFQSVGQVTGI 111
Query: 111 ------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+R+ LQ +++ DIVW K N MP R +HE +
Sbjct: 112 VSITKSVDGLKPKDLIGLPWRVAFALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYI 171
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG------------ 200
S SPK + + S+ ++R + G
Sbjct: 172 FLLSKSPKYYYDHESIKEPAVYGQQDVRGSEGAFGPPQRAKRTSKEKGSFNGKYGHEAFR 231
Query: 201 -------------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
++ H PEAL+ +++ I++DPFFGSGT G VA
Sbjct: 232 AIRDKRNKRSVWTVATKPLKEAHFATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVA 291
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQ 269
K R+FIGIE+ YI+I+ + +++VQ
Sbjct: 292 AKHNRNFIGIELNPGYIEISDRLLSNVQ 319
>gi|60115640|ref|YP_209431.1| putative methylase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|45758198|gb|AAS76410.1| putative site-specific DNA methyl transferase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
Length = 227
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVQGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|237755754|ref|ZP_04584359.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237692089|gb|EEP61092.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 325
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 25/274 (9%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
S+KN +N Q + +W +KI S + ++P S+ L F PPYN
Sbjct: 70 SEKNVNNLNNFQQNTMDWMNKIYCQ-SSENMFQIPDGSIALAFTSPPYNNGKEY------ 122
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------YHNIFRIG 115
DK + + Y RVLK G + + Y + +
Sbjct: 123 -----------DKNLNLKEYLLLLARVGKEVFRVLKKGGRYVINIANLGRKPYIPLHSLL 171
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
++ + + + + + D +
Sbjct: 172 YIIHAEIGFRPAGEIIWQKGKGASGNCAWGSWLSAKSPRIRDIHEYLLIFVKDDFSRPDK 231
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + + + +K+ HP P L SR++ + D+ILDPF GS
Sbjct: 232 GVSTISKEEFLNYTISIWEVPPASAKKIGHPAPFPIELASRVIKLFSYENDVILDPFVGS 291
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
GT+ AKKL+R+F+G ++ ++Y IA KR+
Sbjct: 292 GTTCVAAKKLKRNFVGYDINEEYCKIALKRLQEE 325
>gi|288817544|ref|YP_003431891.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
gi|288786943|dbj|BAI68690.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
gi|308751147|gb|ADO44630.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
TK-6]
Length = 318
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 23/259 (8%)
Query: 22 KIIKGNSISV-LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+++ + + V LE+L V+LI PPYN+ + D +E
Sbjct: 72 RLLLNDFLKVDLEEL-RGKVNLIVTSPPYNVGMEYGTI--------------DDSMGYEE 116
Query: 81 YDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y FT +L ++L +G + + I N I ++ ++ + +S + N
Sbjct: 117 YLRFTERYLKRFYQLLADDGRVCLNIPLDKNKGGIQSVYADVVCLAKKVGLKYQSTIVWN 176
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTF----NYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + A + + AS + K + S +
Sbjct: 177 EQNISRRTAWGSWLSASAPYIIAPVEMVVLLYKEDWKRRDRGKTTISREEFIEWTNGMWT 236
Query: 196 RNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ K HP P L R + + GD++LDPF GSGT+ +KL R +GI++
Sbjct: 237 FPGENRKALGHPAPFPLELPLRCIKLFSYEGDLVLDPFVGSGTTMVACRKLNRKGVGIDI 296
Query: 254 KQDYIDIATKRIASVQPLG 272
++Y+ +A KRI V P
Sbjct: 297 NKNYLKLAVKRIKEVSPAM 315
>gi|205320897|gb|ACI03011.1| hypothetical protein V35_57 [uncultured bacterium HHV35]
Length = 577
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/340 (20%), Positives = 126/340 (37%), Gaps = 56/340 (16%)
Query: 1 MSQKNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ N Q I E+ ++ IIKGN++ L L S+DLI+ DPP+N + +
Sbjct: 151 FTNSKRYTENGVQEDIAEFTNQDNLIIKGNNLIALHSLKERYAGSIDLIYIDPPFNTEHD 210
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
Y DKF + + F + L R +L +GT++V ++ +
Sbjct: 211 SFKYN-------------DKF-NESTWLTFMKNRLEIARDLLSVSGTIYVHIDHNEGHYL 256
Query: 115 GTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
++ + + + + F+ H+++ + S ++ + ++ +
Sbjct: 257 KVLMDEIFGRQYFRNEIIWRYSGWNKKLNYGFEKRHDSIFVYAKS-DSQYFESYFEKWAS 315
Query: 174 ANEDVQMRSDWLIPICSGSE----------RLR------------------------NKD 199
E V+ R L+ G E R + +
Sbjct: 316 KEEYVKKRKQKLLTDTDGREYVLSDAGGGNRTKVFIEDVLSKGVVVDDVWDIDKLNNSAK 375
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+QK EALL RI+ +S P I+LD GSGT+ A A K+ R +IGIE +
Sbjct: 376 ESVGFASQKKEALLERIISASCPPNGIVLDFHLGSGTTCAAAHKMGRRYIGIEQMDYINE 435
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
R+ V ++ + + L+E +
Sbjct: 436 TTVPRLQKVIEGEQNGISKNVSWQGGGSFVYTELMELNYL 475
>gi|324120124|ref|YP_004249885.1| hypothetical protein pc15-k-034 [Klebsiella pneumoniae]
gi|323388252|gb|ADX60401.1| hypothetical protein pc15-k-034 [Klebsiella pneumoniae]
Length = 258
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 34/248 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I GN I V+ P ++VDLI DPPY + R + VTD W + ++
Sbjct: 28 RFILGNCIDVMRGFPDRAVDLIVTDPPYVVGFKD---RQGRQIAGDVTDEWLQPATL--- 81
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + ++ + R + F+ + +V+
Sbjct: 82 ---------EMYRVLKKDALMVSFYGWNRVDRFMAAWKAAGFYAVGQLVF---------- 122
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + + + A A L + G
Sbjct: 123 ----TKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----PYTGN 173
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
LHPTQKP L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y
Sbjct: 174 ALHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAG 233
Query: 262 TKRIASVQ 269
T+R+A++
Sbjct: 234 TERLAAMH 241
>gi|331675763|ref|ZP_08376481.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
gi|331076537|gb|EGI47813.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
Length = 227
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++DLI DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDLILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|325983433|ref|YP_004295835.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
AL212]
gi|325532952|gb|ADZ27673.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
Length = 292
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 62/277 (22%), Positives = 101/277 (36%), Gaps = 49/277 (17%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+S L+ LP S+DLI PPY Q + Y
Sbjct: 7 IYHGDSAEQLKLLPNDSIDLIITSPPYADQRKNTYG----------------GIHHDKYV 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFWILNDIVWRKS 134
+ RVLKP GT + + + ++ + + +W K
Sbjct: 51 EWFLPISAQLLRVLKPTGTFVLNIKEKVVEGERSTYVIELVLEMRKQGWLWTEEFIWHKK 110
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------FNYDALKAANEDVQMRSDWL 185
N P RF++A E L+ + + K Y + LK +E + R +
Sbjct: 111 NCYPGKWPNRFRDAWERLLQFNKNRKFNMYQEEVMVPMGDWANSRLKNLSETDKFRDNSK 170
Query: 186 IPICSGSE----------------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ G L + K H PE L + TK D +LD
Sbjct: 171 VGSGFGKNISNWLYRKKAYPSNVLHLATECNNKNHSAAFPEELPEWFIKLFTKENDRVLD 230
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
PF GSGT+ VA +++R+ +GI++ +Y ++ K++
Sbjct: 231 PFMGSGTTLIVANRMKRNSVGIDIVPEYCEMVRKQLK 267
>gi|293420945|ref|ZP_06661379.1| DNA methylase [Escherichia coli B088]
gi|291324815|gb|EFE64231.1| DNA methylase [Escherichia coli B088]
Length = 227
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 SAYVAYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|225388254|ref|ZP_03757978.1| hypothetical protein CLOSTASPAR_01989 [Clostridium asparagiforme
DSM 15981]
gi|225045722|gb|EEG55968.1| hypothetical protein CLOSTASPAR_01989 [Clostridium asparagiforme
DSM 15981]
Length = 318
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/322 (19%), Positives = 104/322 (32%), Gaps = 91/322 (28%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
DKI G+S+ VL+ LP +D PPY + + ++ E
Sbjct: 6 DKIYCGDSLQVLQTLPDNCMDCCVTSPPYYALRDY-----------GTDGQIGREATPEE 54
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
Y + A +RVL P GT W+ +
Sbjct: 55 YVSRITAVFHEVKRVLTPEGTCWLNIADTYCGTGSKADHQDPKYPKGRNGQQVAVNHRAP 114
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ + I+W K N MP R +E + +
Sbjct: 115 GCKPKDLIGIPWLVALALRGDGWYLRSSIIWHKGNAMPESTRDRPTRCYEYVFLLTK--- 171
Query: 161 AKGYTFNYDALKAA--------------NEDVQMRSDWLIPICSGSERLRNK-------- 198
+K Y +++ A+ + + R R K
Sbjct: 172 SKKYYYDWQAVAEPIAPTTAVRLKSGVGKGNKYAATVPGQNQPQKINRPRRKGAYTDEMI 231
Query: 199 ---------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
H P L +++ G I+LDPF GSGT+ A AK
Sbjct: 232 SPVRSRRNVWQINTASYRGGHFAAFPPKLAETCILAGCPVGGIVLDPFLGSGTTAAAAKS 291
Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
L R ++GIE+ +Y +A +RI
Sbjct: 292 LSRRYVGIEINPEYCTLAKQRI 313
>gi|293386443|ref|YP_003540605.1| DNA methylase [Erwinia amylovora ATCC 49946]
gi|291201086|emb|CBJ48224.1| DNA methylase [Erwinia amylovora ATCC 49946]
Length = 226
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 62/252 (24%), Positives = 94/252 (37%), Gaps = 41/252 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ ++GN I ++ P KSVD I DPPY + R ++ +TD W
Sbjct: 3 RFVQGNCIEIMSGYPEKSVDFILTDPPYLVGFRD---RSGRTIAGDITDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ R T + F I+ V+ KS +
Sbjct: 51 ---LQPACREMYRVLKNDALMVSFYGWNRADRFITEWKAAGFTIVGHFVFTKSY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D G
Sbjct: 105 SAFVGYQHECAYILAKGRPRLPENPLSDVQGWQ-----------------------YTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPT+KP L ++ S T PG I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 KHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQSGRRYIGIELMEKYHRAG 201
Query: 262 TKRIASVQPLGN 273
+R+A+VQ
Sbjct: 202 QRRLAAVQHAMQ 213
>gi|157149435|ref|YP_001451479.1| putative methylase [Escherichia coli E24377A]
gi|157076602|gb|ABV16313.1| DNA methylase family protein [Escherichia coli E24377A]
Length = 227
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++DLI DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDLILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|83645282|ref|YP_433717.1| BamHI-like site-specific methyltransferase [Hahella chejuensis KCTC
2396]
gi|83633325|gb|ABC29292.1| BamHI-like site-specific methyltransferase [Hahella chejuensis KCTC
2396]
Length = 396
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/268 (22%), Positives = 96/268 (35%), Gaps = 36/268 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ +G+ I L+ + S+DL+FADPP+NL D E Y
Sbjct: 113 KLYRGDCIRFLKSIDNDSIDLVFADPPFNLSKLYPSEIDDRLKT-------------ENY 159
Query: 82 DAFTRAWLLACRRVLKPNGTLWV----------------IGSYHNIFRIGTMLQNLNFWI 125
+ + WL C RV+KP G L++ ++ N +
Sbjct: 160 LHWCQEWLFECARVIKPGGALFLWNLPKWNSSLSSYIESFLTFRNWIGVDIKYSLPISNR 219
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
L + + R F + Y V M WL
Sbjct: 220 LYPSHYSLLYFIKGERPNTFNPDRLPMQVCPKCYGDLKDYGGYKDKMNPA-GVNMSDIWL 278
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ + +DG + LL RI+ +TK GD++LDPF G+GT+ A+
Sbjct: 279 DIPPVRHAKYKRRDG----SNELSLKLLDRIIQMATKEGDVVLDPFGGAGTTYMAAELKG 334
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGN 273
R ++G E+ ID+ +R ++
Sbjct: 335 RRWLGCEIGP--IDVIVERFNLIEKERE 360
>gi|317176841|dbj|BAJ54630.1| adenine-specific DNA methylase [Helicobacter pylori F16]
Length = 750
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 77/303 (25%), Positives = 120/303 (39%), Gaps = 61/303 (20%)
Query: 5 NSLAINENQNSIFEWKD------KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG 55
+++ + + I + +IK + L L +++D I+ DPP+N +
Sbjct: 354 DTIYFKDLEEEIKNLFNEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPFNTGSDF 413
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
DKF + + L L P G+ ++ +N +G
Sbjct: 414 AYI--------------DKFQD-STWLSLMHNRLELAYDFLSPQGSFYLHLD-NNANYLG 457
Query: 116 TMLQNLNFW---ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--- 169
ML N F N+I+W SN M N G F ET++ S S K Y
Sbjct: 458 RMLLNDIFGKENFRNEIIWYYSNKMAN-SGNSFAKNTETILNYSKSEKYIFYRQKEPRSE 516
Query: 170 ----ALKAANEDVQMR---------------------SDWLIPICSGSERLRNKDGEKLH 204
+ + + MR D I + +ER++N +
Sbjct: 517 PVLLSKREGRDGKNMRARDENGKVIYELSHERYVDTLWDIPIIGSTSTERVKNNENL--- 573
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
TQKPE LL RI+ +S+ IILD F GSGT+ AVA KL+R +IGIEM + + + R
Sbjct: 574 -TQKPEKLLERIIQASSDENSIILDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPR 632
Query: 265 IAS 267
+
Sbjct: 633 LKK 635
>gi|293400157|ref|ZP_06644303.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306557|gb|EFE47800.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 319
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/319 (21%), Positives = 104/319 (32%), Gaps = 85/319 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP +SV PPY + + + + E
Sbjct: 7 DTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDMQIGREDTPEQ 55
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG----------SYHNI------------------- 111
Y RRVL+ +GTLW+ YH
Sbjct: 56 YIDRLTEVFRELRRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIARNNRVS 115
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ +DI+W+K NPMP R +E + + S K
Sbjct: 116 GCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTKSKK 175
Query: 161 AK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------ 197
T + G R R+
Sbjct: 176 YFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEVPGQGNVQGLNRARSGSYYDEALMPTM 235
Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ H P L + + G ++LDPFFGSGT+GA AK+L R
Sbjct: 236 RNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAAKQLDR 295
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IGIE+ +Y +A RI
Sbjct: 296 HYIGIEINAEYCALARARI 314
>gi|237742462|ref|ZP_04572943.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
4_1_13]
gi|229430110|gb|EEO40322.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
4_1_13]
Length = 312
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 73/314 (23%), Positives = 115/314 (36%), Gaps = 78/314 (24%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G+ L+KL +S+D I PPY + + + E Y
Sbjct: 2 KIIHGDCFENLKKLETESIDCIVTSPPYWQLRDYETP-----------GQIGLEENVEEY 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSY-------------------HNIF---------- 112
+ R+LK +GT ++ NIF
Sbjct: 51 LEKLMNIMNELYRILKKSGTFFLNMGDTYSNVNSKFSRRINKKRGKENIFKTITRKTDVK 110
Query: 113 ---------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK- 162
R+ + + + + N+I+W K N +P RF N E + + + + K
Sbjct: 111 RKSKLMIPERLCIKMIDAGWILRNEIIWHKPNVLPEAVSDRFTNDFEKIFFFTKNQKYYF 170
Query: 163 --GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK------------------ 202
Y + + +A +D + + + SG ++ K K
Sbjct: 171 KKQYEPYSEKILSAFKDGIIPTGRKKLLESGESKMTMKKINKPWKAEYSEKGRNMRSVWS 230
Query: 203 --------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
H PE L++R L+S +LDPF GSGT+ VAKKL + IGIE+K
Sbjct: 231 VATKGIREGHYASFPEKLVTRCLISGCPENGTVLDPFLGSGTTLVVAKKLGINGIGIELK 290
Query: 255 QDYIDIATKRIASV 268
++YI IA RI
Sbjct: 291 KEYIAIAINRIKED 304
>gi|326782063|ref|YP_004322464.1| DNA adenine methylase [Prochlorococcus phage P-HM1]
gi|310004270|gb|ADO98663.1| DNA adenine methylase [Prochlorococcus phage P-HM1]
Length = 309
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 73/311 (23%), Positives = 111/311 (35%), Gaps = 75/311 (24%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+KI+ G+ L + + PPY N + + + E
Sbjct: 2 KNKILFGDCRDTLPTI-DVKARMCVTSPPYYGLRNYGNE----------DNQIGQEDTPE 50
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNI-------------------------- 111
+ + R VL +GTLWV SY+N
Sbjct: 51 QFINNLVEVFRSVRDVLTDDGTLWVNIGDSYYNYRPGKGQALVKQTVSTTNRDQPDKCAR 110
Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+ + L+ +++ DI+W K NPMP R +HE L
Sbjct: 111 RANKLDGLKEKDLIGIPWMLAFALRADGWYLRQDIIWHKPNPMPESVRDRCTKSHEYLFL 170
Query: 155 ASPSPKAK-------------GYTFNYDALKAANEDVQMRSD------WLIPICSGSERL 195
S + K T N D K NE ++ + +
Sbjct: 171 LSKNRKYYYDNEAIKEPVKQDWGTRNRDQGKYHNEGTGLQPHTGLTKSYTTKNKRSVWSI 230
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
NK + H P L+ +++ ++ GDIILDPF GSGT+G VAKK R++IG E+ +
Sbjct: 231 TNKPYKGAHFAVFPPDLIEPCILAGSERGDIILDPFMGSGTTGMVAKKHGRNYIGCELHE 290
Query: 256 DYIDIATKRIA 266
DY + T RI
Sbjct: 291 DYASLQTDRID 301
>gi|295108399|emb|CBL22352.1| DNA modification methylase [Ruminococcus obeum A2-162]
Length = 321
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/320 (21%), Positives = 115/320 (35%), Gaps = 49/320 (15%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKG--NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
M ++ SL + + + K++ + L++LP KS+ LI DPPYNL+L G
Sbjct: 19 MRKEESLKNKTSSDFEMPAEIKLLHSISDCGDFLKQLPDKSIQLICIDPPYNLELAG--- 75
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----NIFRI 114
WD + + Y + W+ RVL NG++ + G +
Sbjct: 76 -------------WDIYEN---YIEWASKWIDEAYRVLSDNGSMVIFGGIQFRDAKSGDL 119
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALK 172
++Q + +V N R F N HE IW + Y F+ D+++
Sbjct: 120 LDIIQYIRKNTKFKLVNTIIWHYKNGMSAHRFFANRHEEAIWLVK---SNNYYFDLDSVR 176
Query: 173 A---------------ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
N + + + N HPTQKP A++ R +
Sbjct: 177 VPYSEEDLKVALRDKRLNPETTRKGKNPTNVWEIGRLNGNSKERVGHPTQKPVAIIERFI 236
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
+ + PG +LD F GSGT G V R+ + + +D A L
Sbjct: 237 KALSYPGATVLDFFAGSGTVGRVCINEGRNCLMCDSDNKSLDY----FAKHLSLMEELGQ 292
Query: 278 VLTGKRTEPRVAFNLLVERG 297
++ E F +G
Sbjct: 293 NTQYRKVENIQDFFEYNTKG 312
>gi|188574255|ref|YP_001919391.1| DNA methylase [Escherichia coli 53638]
gi|188501430|gb|ACD54564.1| DNA methylase [Escherichia coli 53638]
Length = 227
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|91204082|emb|CAJ71735.1| similar to DNA-methyltransferase (cytosine-specific) [Candidatus
Kuenenia stuttgartiensis]
Length = 276
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 49/287 (17%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
I ++ +KII G+ L ++P+ SVDLI PPY + + +
Sbjct: 3 INDFINKIIYGDIKEKLLQIPSNSVDLIVTSPPY---ADKRKIIYNTIPA---------- 49
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWILN 127
E Y + +R+L NG+ + + + ++ + +
Sbjct: 50 ---EKYVEWFMPITDELKRILNENGSFILNIKEKAENGERHTYVLELILEMKKQGWLWVE 106
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY----------------------- 164
+ +W K N P RF++A E + + K K +
Sbjct: 107 EYIWHKKNCYPGKWPNRFRDAWERCLHFTKQKKFKMFQESVMIPIGDWVEERLKNLSERD 166
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTK 222
+++ + + + + L + K H P AL + T+
Sbjct: 167 KMRFESRSKSGFGKNISNWLNRDKVYPTNVLHLATECSNKNHSATFPVALPCWFIKLFTE 226
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GD++LDPF GSGT+ +L R +IGIE+K++Y +A +RI + Q
Sbjct: 227 EGDVVLDPFIGSGTTAIACLQLNRKYIGIEIKEEYYKLAIERIKNTQ 273
>gi|163816267|ref|ZP_02207634.1| hypothetical protein COPEUT_02455 [Coprococcus eutactus ATCC 27759]
gi|166032412|ref|ZP_02235241.1| hypothetical protein DORFOR_02115 [Dorea formicigenerans ATCC
27755]
gi|167747571|ref|ZP_02419698.1| hypothetical protein ANACAC_02292 [Anaerostipes caccae DSM 14662]
gi|167760843|ref|ZP_02432970.1| hypothetical protein CLOSCI_03231 [Clostridium scindens ATCC 35704]
gi|210615450|ref|ZP_03290577.1| hypothetical protein CLONEX_02793 [Clostridium nexile DSM 1787]
gi|283796271|ref|ZP_06345424.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
gi|331088100|ref|ZP_08337021.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
gi|158448462|gb|EDP25457.1| hypothetical protein COPEUT_02455 [Coprococcus eutactus ATCC 27759]
gi|166028135|gb|EDR46892.1| hypothetical protein DORFOR_02115 [Dorea formicigenerans ATCC
27755]
gi|167652933|gb|EDR97062.1| hypothetical protein ANACAC_02292 [Anaerostipes caccae DSM 14662]
gi|167661446|gb|EDS05576.1| hypothetical protein CLOSCI_03231 [Clostridium scindens ATCC 35704]
gi|210150299|gb|EEA81308.1| hypothetical protein CLONEX_02793 [Clostridium nexile DSM 1787]
gi|291076207|gb|EFE13571.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
gi|291543122|emb|CBL16232.1| DNA modification methylase [Ruminococcus bromii L2-63]
gi|330409056|gb|EGG88515.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 319
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/319 (21%), Positives = 104/319 (32%), Gaps = 85/319 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP +SV PPY + + + + E
Sbjct: 7 DTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDMQIGREDTPEQ 55
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG----------SYHNI------------------- 111
Y RRVL+ +GTLW+ YH
Sbjct: 56 YIDRLTEVFRELRRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIARNNRVS 115
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ +DI+W+K NPMP R +E + + S K
Sbjct: 116 GCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTKSKK 175
Query: 161 AK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------ 197
T + G R R+
Sbjct: 176 YFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEVPGQGNVQGLNRARSGSYYDEALMPTM 235
Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ H P L + + G ++LDPFFGSGT+GA AK+L R
Sbjct: 236 RNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAAKQLDR 295
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IGIE+ +Y +A RI
Sbjct: 296 HYIGIEINAEYCALARARI 314
>gi|9507473|ref|NP_052480.1| putative methylase [Plasmid ColIb-P9]
gi|32470188|ref|NP_863412.1| putative methylase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|194447065|ref|YP_002039086.1| putative methylase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194447177|ref|YP_002043881.1| DNA methylase family protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|4512470|dbj|BAA75119.1| ycdB [Plasmid ColIb-P9]
gi|20521556|dbj|BAB91620.1| putative mrthylase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|194358509|gb|ACF56953.1| DNA methylase family protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194405481|gb|ACF65702.1| DNA methylase family protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|321271602|gb|ADW79690.1| putative DNA methyltransferase [Salmonella enterica subsp. enterica
serovar Kentucky]
Length = 227
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P +D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNGIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYVLAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|92116190|ref|YP_575919.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
gi|91799084|gb|ABE61459.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
Length = 215
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 41/252 (16%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S + ++ I +G+ I V++ +P++SVD I DPPY ++ + R + +A
Sbjct: 4 STNQLRNSIQRGDCIEVMQAIPSRSVDFILTDPPYLVRYKCRDGRSIMNDDNA------- 56
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ RVL + + R ++ F I+ IV+RK
Sbjct: 57 --------EWLEPAAHEMYRVLNRDSLCVSFYGWTQTDRFIAAWRSAGFRIVGHIVFRKR 108
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
R HE+ + A D +
Sbjct: 109 YAS---AKRFVSYTHESAYVLAKGRPALPEHPPADVIDF--------------------- 144
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
G +LHPTQKP L ++ + G ++LDPF GSG++ A++ ++GIE+
Sbjct: 145 --PYSGNRLHPTQKPVMALMPLITAFCPEGGLVLDPFCGSGSTLVAARQAGCDYLGIELD 202
Query: 255 QDYIDIATKRIA 266
Y IA +R+A
Sbjct: 203 HRYHRIAARRLA 214
>gi|331647347|ref|ZP_08348440.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
gi|331043753|gb|EGI15890.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
Length = 227
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ +P ++D I DPPY + R ++ V D W + +S
Sbjct: 3 RFVLGNCIDVMATIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + L ++ I + F ++ +V+ K+ +
Sbjct: 57 ---------EMYRVLKKDALLVSFYGWNRIDLFMAAWKRAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAAFQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|55980378|ref|YP_143675.1| putative modification methylase [Thermus thermophilus HB8]
gi|194709111|pdb|2ZIF|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
gi|194709112|pdb|2ZIF|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
gi|194709113|pdb|2ZIG|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
gi|194709114|pdb|2ZIG|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
gi|55771791|dbj|BAD70232.1| putative modification methylase [Thermus thermophilus HB8]
Length = 297
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/287 (18%), Positives = 90/287 (31%), Gaps = 47/287 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++ G++ VL P SV L+ PPY + +EA
Sbjct: 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPG----------QLGHIEDYEA 71
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ R+L P G L ++ + R + + V + N
Sbjct: 72 FLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNL 131
Query: 141 RGRRFQNAHET-----------------------------LIWASPSPKAKGYTFNYDAL 171
+ + H L+ P K +
Sbjct: 132 NPIIW-HKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILMQRKPGGYRKPTQEQREKS 190
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ ED + G + K HP P L R++ + GD++LDPF
Sbjct: 191 RLPKEDFHRFFRQIWDDIPG-------ESTKDHPAPFPLELAERLVRMFSFVGDVVLDPF 243
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
G+GT+ A + R +G+E+ Y +A +R A P ++E+
Sbjct: 244 AGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLEVLD 290
>gi|260910196|ref|ZP_05916873.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
gi|260635700|gb|EEX53713.1| DNA (cytosine-5-)-methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
Length = 439
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/261 (19%), Positives = 101/261 (38%), Gaps = 32/261 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+++++ G+ V+ + + D+I DPPYN+ G D++ +
Sbjct: 189 ENRLLCGDCRSKKDVVTLMGGRCADMILTDPPYNVAYEGGTEEKMKIENDSMEND----- 243
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F ++ VLKP G+ +V + ++ NF I +W K
Sbjct: 244 ---LFAQFLKSVFENMYAVLKPGGSFYVFHADSEGENFRKAIREANFKIAQCCIWVKDTL 300
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + Y + A N + + + W R
Sbjct: 301 VMGR------------QDYQWQHEPCLYGWKLGAAHYWNSNRKQTTIW---------RFD 339
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++HPT KP AL++ + +STK G+I++D F GSG++ ++ R +E+
Sbjct: 340 KPRANRIHPTMKPVALMAYPICNSTKNGEIVVDLFSGSGSTIMACQQTDRIGYAMEIDPK 399
Query: 257 YIDIATKRIASVQPLGNIELT 277
Y+ + R ++ P +I L
Sbjct: 400 YVAASVLRFKAMFPQADIRLE 420
>gi|10955304|ref|NP_052645.1| putative methylase [Escherichia coli O157:H7 str. Sakai]
gi|75994520|ref|YP_325634.1| putative methylase [Escherichia coli O157:H7 EDL933]
gi|149930817|ref|YP_001294717.1| putative methylase [Escherichia coli]
gi|168752517|ref|ZP_02777539.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4113]
gi|168757287|ref|ZP_02782294.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
gi|168765074|ref|ZP_02790081.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4501]
gi|168769248|ref|ZP_02794255.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
gi|168776734|ref|ZP_02801741.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4196]
gi|168783023|ref|ZP_02808030.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4076]
gi|168789946|ref|ZP_02814953.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC869]
gi|168802817|ref|ZP_02827824.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC508]
gi|208811329|ref|ZP_03253089.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4206]
gi|208817433|ref|ZP_03258462.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4045]
gi|208823371|ref|ZP_03263688.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4042]
gi|209395564|ref|YP_002268432.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4115]
gi|217329930|ref|ZP_03446005.1| DNA methylase family protein [Escherichia coli O157:H7 str.
TW14588]
gi|254667492|ref|YP_003082178.1| hypothetical protein ECSP_6044 [Escherichia coli O157:H7 str.
TW14359]
gi|261225668|ref|ZP_05939949.1| hypothetical protein EscherichiacoliO157_13847 [Escherichia coli
O157:H7 str. FRIK2000]
gi|261257877|ref|ZP_05950410.1| hypothetical protein EscherichiacoliO157EcO_18978 [Escherichia coli
O157:H7 str. FRIK966]
gi|37695805|gb|AAR00467.1|AF401292_70 w0053 [Escherichia coli]
gi|3337036|dbj|BAA31795.1| hemagglutinin-associated protein [Escherichia coli O157:H7 str.
Sakai]
gi|3822188|gb|AAC70142.1| hypothetical protein [Escherichia coli O157:H7]
gi|187767953|gb|EDU31797.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4196]
gi|188013662|gb|EDU51784.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4113]
gi|188999527|gb|EDU68513.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4076]
gi|189355640|gb|EDU74059.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
gi|189361686|gb|EDU80105.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
gi|189365051|gb|EDU83467.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4501]
gi|189370557|gb|EDU88973.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC869]
gi|189375299|gb|EDU93715.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC508]
gi|208729959|gb|EDZ79176.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4206]
gi|208730610|gb|EDZ79309.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4045]
gi|208736966|gb|EDZ84651.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4042]
gi|209157019|gb|ACI34453.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4115]
gi|217317161|gb|EEC25594.1| DNA methylase family protein [Escherichia coli O157:H7 str.
TW14588]
gi|254595844|gb|ACT75204.1| hypothetical protein ECSP_6044 [Escherichia coli O157:H7 str.
TW14359]
gi|320188691|gb|EFW63352.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
EC1212]
gi|326337217|gb|EGD61053.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
1125]
gi|326347713|gb|EGD71431.1| Adenine-specific methyltransferase [Escherichia coli O157:H7 str.
1044]
Length = 227
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ + V+ +P VD I DPPY + D + + +
Sbjct: 3 RFIQGDCVRVMATIPGNGVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|209526335|ref|ZP_03274864.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|209493264|gb|EDZ93590.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 271
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 66/286 (23%), Positives = 110/286 (38%), Gaps = 59/286 (20%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++IIKGN I V++ S+DL PPY D ++
Sbjct: 5 NQIIKGNCIEVMKSFDENSIDLTITSPPY-----------------------DNLRKYKG 41
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF---------RIGTMLQNLNFWILNDIVW 131
Y RV KP G + I I + + + F + + +++
Sbjct: 42 YTFPFEEIARQLYRVTKPGGIVVWIVGDATIKGSETGTSFKQALYFKEEIGFNLHDTMIF 101
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+KSNP+P +R+ N E + S T N + + +++ G
Sbjct: 102 QKSNPIPQIYRKRYNNIFEYMFVFSK---GNVKTHNPIKIDCLHAGLELHGTTYKNYSRG 158
Query: 192 SER-------LRNKDGE-----------------KLHPTQKPEALLSRILVSSTKPGDII 227
++ ++N+ + K HP P AL + S T PG+I+
Sbjct: 159 KQKRGKMAHPVKNQKIKGNIWEYVVGKKSEDQEAKDHPAPFPCALACDHIKSWTNPGEIV 218
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
LDP GSGT+ A +L R +IGIE+ +Y ++A KRI ++
Sbjct: 219 LDPMCGSGTTCRSAFQLGRQYIGIEISHEYCELARKRIQKIEAQPR 264
>gi|304439723|ref|ZP_07399622.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371798|gb|EFM25405.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 383
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 17/260 (6%)
Query: 18 EWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
K+ ++ + + L VDLI+ DPP+N + D D ++
Sbjct: 39 NPKNLVVLADGFETINFLKENKILVDLIYIDPPFNTGKTFGI-EIDAGDEKIYKDCYEDN 97
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + + L + +LK G++++ Y + ++ + S
Sbjct: 98 LDKDEFLLWMYEILTRLKNLLKETGSIFLHVDYRTSSELKLIMDKVFGDSNFVNEIIWSY 157
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYT------FNYDALKAANEDVQMRSDWLIPI- 188
+ F H+ +++ S + K + +N D + V+ D L
Sbjct: 158 KSGGAGKKSFSKKHDNILFYSKDYRQKIFKPLKEKSYNRDFKPYNFKGVKEYKDHLGYYT 217
Query: 189 -------CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ R +P+QKP LL RI+ S+T+ G +LD F GSG++ A
Sbjct: 218 MVNMKDVWNIDMVGRTSSERVKYPSQKPFELLRRIIESTTEEGMTVLDIFGGSGSTAKAA 277
Query: 242 KKLRRSFIGIEMKQDYIDIA 261
L+R +I ++ + +A
Sbjct: 278 SILKRHYIHGDISEYSCSVA 297
>gi|194430357|ref|ZP_03062846.1| DNA methylase family protein [Escherichia coli B171]
gi|194411606|gb|EDX27939.1| DNA methylase family protein [Escherichia coli B171]
Length = 227
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|188528172|ref|YP_001910859.1| putative type III restriction enzyme M protein [Helicobacter pylori
Shi470]
gi|188144412|gb|ACD48829.1| putative type III restriction enzyme M protein [Helicobacter pylori
Shi470]
Length = 572
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 74/369 (20%), Positives = 125/369 (33%), Gaps = 73/369 (19%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 168 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 213
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI--LNDIVWRKSN 135
++ F + L R L +G++++ Y+ + ++ + ++I+WR
Sbjct: 214 HSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENLRSEIIWRMGF 273
Query: 136 -PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------------------- 174
+++ H+T+++ S S +
Sbjct: 274 LSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQE 333
Query: 175 -------------NEDVQMRSDWLIPICSGS--------------ERLRNKDGEKLHPTQ 207
+ D E + D Q
Sbjct: 334 KVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDEN--FKGQ 391
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KPEAL+SRIL ST D++LD F GSGT+ AVA K++R +IGIE I +R+
Sbjct: 392 KPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKK 451
Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS--- 324
V ++ + + L E L QIL N + D +
Sbjct: 452 VIGGEQGGISKKCDFKGGGSFVYAELKEVNLEVKKQILNAKSANECLKIFNDLSERFLKR 511
Query: 325 -GTELGSIH 332
++G IH
Sbjct: 512 ADCKIGEIH 520
>gi|256005294|ref|ZP_05430260.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
2360]
gi|255990730|gb|EEU00846.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
2360]
gi|316939535|gb|ADU73569.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
1313]
Length = 623
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 73/331 (22%)
Query: 19 WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL-YRPDHSLVDA------- 67
W +++ G+++ V+ L + + LI+ DPP++ + + + R ++
Sbjct: 52 WVNRLYWGDNLQVMSHLMKEFRGKIKLIYIDPPFDSKADYRKRIRLRGKQLEGDTSVIEE 111
Query: 68 --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM---LQNLN 122
TD W + + Y F L R +L G +++ + + I + + +
Sbjct: 112 KQYTDIW----ANDLYLQFMYERLQLMRELLSEEGFIFIHLNDERVHYIKIILDEIFGNS 167
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNA-HETLIWASPSPK-----AKGYTFNYDALKAAN- 175
+ IV R G N + ++ S S + Y + +
Sbjct: 168 NYRNQIIVKRIKKSYIEQSGVFSFNEGCDYILLYSKSENPRLRPSLKYAPKEERWHGFDA 227
Query: 176 -----------------EDVQMRSDWLIPICS---GSERLRNKDGE-------------- 201
G R G+
Sbjct: 228 PNIRPNLTYELFGQLPPPGRHWLKSPEEAQKMIEAGDLRPNPNTGKPEYRIPATEYISRD 287
Query: 202 ------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+PT+K E LL IL ++ PGD++ D F GSGT+ AVA+KL R +I
Sbjct: 288 NLWDDITASAFTTGYPTEKNETLLEEILNVASNPGDLVADFFCGSGTTMAVAQKLGRRWI 347
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
G ++ + +R++ + E T
Sbjct: 348 GSDINLGAVHTTARRVSQIIKEQQEETRQQT 378
>gi|331660288|ref|ZP_08361223.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
gi|331052555|gb|EGI24591.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
Length = 227
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFILGDCVRVMATFPDNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|331088961|ref|ZP_08337868.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
gi|330406413|gb|EGG85926.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 277
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/267 (19%), Positives = 101/267 (37%), Gaps = 27/267 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I + + +L ++P V LI DPPY + R H+++ +
Sbjct: 18 NQIYHTDCMELLAQIPDNYVSLILTDPPYGISYRNHFARQPHAVLTG--------DTGID 69
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK-SNPMPN 139
Y+ F R+L+ N + + L+ F + N ++ K +
Sbjct: 70 YERF----ARESYRILRENSHAYFFTRFDCYPYHYDCLERAGFTVKNCLIVEKGTIGGIG 125
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDA-------LKAANEDVQMRSDWLIPICSGS 192
+ N E +I+ + +T + A E + G
Sbjct: 126 DLTGSYANNAEWIIFCQKGRRTFQHTTLLENRKKEGMQYHAGRERSKKYKTRFNACWFGE 185
Query: 193 ERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
E + K + HPT K LS ++ S+ G+++ D F G+G++ A + +
Sbjct: 186 EYPKATYNSVWQKQHQIYHPTIKNVECLSWLIQISSLQGELVFDGFMGTGSTALAAIQTQ 245
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
R+++G E+ + Y +IA RI V+
Sbjct: 246 RAYLGAEIDKAYFEIAQNRIKEVEKRN 272
>gi|265525120|gb|ACY75917.1| cytosine methyltransferase [Prochlorococcus phage P-SSM2]
Length = 327
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/315 (21%), Positives = 106/315 (33%), Gaps = 73/315 (23%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +D I+ G+ L++ + + PPY + +
Sbjct: 4 KQMRDTILFGDCRDTLKEF-DEKARMCVTSPPYYGLRDYG----------GEESQIGQEQ 52
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNI----------------------- 111
S E + R VL +GT WV SY+N
Sbjct: 53 SPEEFIDELVKVFREVRNVLTDDGTCWVNLGDSYYNYRKDGCIPKQTFAKNRQDLPETTP 112
Query: 112 ------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ ++ + + DI+W K NPMP R AHE +
Sbjct: 113 RRSNKLKGLKEKDLIGIPWMFAFAMRADGWHLRQDIIWHKPNPMPESVRDRCTKAHEYIF 172
Query: 154 WASPSP-------------KAKGYTFNYDALKAANEDV--QMRSDWLIPICSGSER---- 194
S K G +N D S ++R
Sbjct: 173 LFSKQKNYFYDNEAIKEDAKDWGTRDRSKGKYTSNNDYGQTPHSGLTKSYAKKNKRSVWS 232
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ K + H P L+ +++ ++ GDI+LDPF GSGT+ AVAK L R +IG E+
Sbjct: 233 VTKKPYKGAHFATYPPDLIEPCILAGSEKGDIVLDPFMGSGTTAAVAKSLGRDYIGCELH 292
Query: 255 QDYIDIATKRIASVQ 269
+DY D+ KR+ +
Sbjct: 293 EDYGDLIRKRVGEYE 307
>gi|225375688|ref|ZP_03752909.1| hypothetical protein ROSEINA2194_01313 [Roseburia inulinivorans DSM
16841]
gi|257437540|ref|ZP_05613295.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
gi|225212458|gb|EEG94812.1| hypothetical protein ROSEINA2194_01313 [Roseburia inulinivorans DSM
16841]
gi|257199847|gb|EEU98131.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
gi|295109653|emb|CBL23606.1| DNA modification methylase [Ruminococcus obeum A2-162]
Length = 293
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 107/296 (36%), Gaps = 62/296 (20%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP++SV+ PPY + + + + E
Sbjct: 4 DVIINRDALYALRELPSESVNCCVTSPPYYGLRDY-----------GLDAQIGREDTPEQ 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN-----------------IFRIGTMLQNLNF 123
Y RRVLK +GT W+ + + + L++ +
Sbjct: 53 YIGRLVEVFRELRRVLKDDGTFWLNIADTYCGSGMKAGCKQKDLIGIPWLLAFALRSDGW 112
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG----------------YTFN 167
++ +DI+W K NPMP R +E + + S K Y
Sbjct: 113 YLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTKSKKYYYDAAAIAEPIAPGTAARYRQG 172
Query: 168 YDALKAANEDVQMRSD-----------WLIPICSGSERLRNK-------DGEKLHPTQKP 209
A E+V + + + R + + H P
Sbjct: 173 RSAGHKYAEEVPGQGKVQGINQPRSGSYYDDALMPTTRNKRDVWLINTVPYKGGHFAAYP 232
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
L +++ G +++DPFFGSGT+G A+ L R +IGIE+ +Y +A RI
Sbjct: 233 PKLAETCILAGCPKGGVVIDPFFGSGTTGLAAQSLDRRYIGIELNAEYCALAGARI 288
>gi|85715342|ref|ZP_01046324.1| hypothetical protein NB311A_12479 [Nitrobacter sp. Nb-311A]
gi|85697763|gb|EAQ35638.1| hypothetical protein NB311A_12479 [Nitrobacter sp. Nb-311A]
Length = 210
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 41/244 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I+ G+ I + L SVD + DPPY ++ R ++ + + +
Sbjct: 5 TILHGDCIQTMRGLAGASVDFVLTDPPYGVRYR---SRDGQTIAN------------DNH 49
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RV+ P + ++ + T+ + L F ++ +V+ K
Sbjct: 50 LTWLYPAFAEVYRVMMPGSLCFSFYGWNAADQFLTVWKALGFRVVGHVVFAKRYAA---S 106
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ HE + D L A G
Sbjct: 107 RLFLAHRHEQGYLLAKGNPVLPQNPLPDVLPWA-----------------------YTGN 143
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+LHPTQKP L R++ + KPG I+LDPF GSG++ AK R FIGIE+ + + A
Sbjct: 144 RLHPTQKPVKPLQRLIETFCKPGGIVLDPFCGSGSTLLAAKLSGRPFIGIEIDRQHHATA 203
Query: 262 TKRI 265
KR+
Sbjct: 204 LKRL 207
>gi|224438686|ref|ZP_03659576.1| putative methyltransferase [Helicobacter cinaedi CCUG 18818]
gi|313145068|ref|ZP_07807261.1| modification methylase HpaI [Helicobacter cinaedi CCUG 18818]
gi|313130099|gb|EFR47716.1| modification methylase HpaI [Helicobacter cinaedi CCUG 18818]
Length = 276
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 60/275 (21%), Positives = 113/275 (41%), Gaps = 24/275 (8%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
EW +KI +++ +L+ LP + +D+I++DP YN+ +N + T W
Sbjct: 1 MEW-NKIYNDDTLKILKSLPNECLDMIWSDPDYNVGINYNGSK--------YTQKW---- 47
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y ++ C RVLKP+G L+++ + + + +++ VW +
Sbjct: 48 --EDYISWYCELATQCLRVLKPSGNLFLMNYPKQNAYLRVKCLDSLAYDVSEYVWVYNTN 105
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-------RSDWLIPIC 189
+ RR AH ++I A+ S Y N D ++ +
Sbjct: 106 V-GHSKRRLTTAHRSIIHATKSKNNHFYKDNIALPYQNPTDKRILQRLADGHKGRMPYSW 164
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ ++N +K H Q P L+ + S T GD + F GSG + + L+R +
Sbjct: 165 FYFDLVKNVSKDKTFHSCQIPAPLVEMFIKSCTNEGDSVFVLFGGSGGEILLCENLKRKW 224
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
I E+ + Y ++ R+ S + N ++
Sbjct: 225 ISCELHKPYFEMINDRLQSNGTIKNEFRLPNFARK 259
>gi|61805913|ref|YP_214273.1| DNA adenine methylase [Prochlorococcus phage P-SSM2]
gi|61374422|gb|AAX44419.1| DNA adenine methylase [Prochlorococcus phage P-SSM2]
Length = 322
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/312 (21%), Positives = 105/312 (33%), Gaps = 73/312 (23%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+D I+ G+ L++ + + PPY + + S E
Sbjct: 2 RDTILFGDCRDTLKEF-DEKARMCVTSPPYYGLRDYG----------GEESQIGQEQSPE 50
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNI-------------------------- 111
+ R VL +GT WV SY+N
Sbjct: 51 EFIDELVKVFREVRNVLTDDGTCWVNLGDSYYNYRKDGCIPKQTFAKNRQDLPETTPRRS 110
Query: 112 ---------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
+ ++ + + DI+W K NPMP R AHE + S
Sbjct: 111 NKLKGLKEKDLIGIPWMFAFAMRADGWHLRQDIIWHKPNPMPESVRDRCTKAHEYIFLFS 170
Query: 157 PSP-------------KAKGYTFNYDALKAANEDV--QMRSDWLIPICSGSER----LRN 197
K G +N D S ++R +
Sbjct: 171 KQKNYFYDNEAIKEDAKDWGTRDRSKGKYTSNNDYGQTPHSGLTKSYAKKNKRSVWSVTK 230
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K + H P L+ +++ ++ GDI+LDPF GSGT+ AVAK L R +IG E+ +DY
Sbjct: 231 KPYKGAHFATYPPDLIEPCILAGSEKGDIVLDPFMGSGTTAAVAKSLGRDYIGCELHEDY 290
Query: 258 IDIATKRIASVQ 269
D+ KR+ +
Sbjct: 291 GDLIRKRVGEYE 302
>gi|261837490|gb|ACX97256.1| type III restriction enzyme M protein [Helicobacter pylori 51]
Length = 619
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 76/287 (26%), Positives = 114/287 (39%), Gaps = 55/287 (19%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
S E +IK + L L +++D I+ DPP+N +
Sbjct: 239 SEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPFNTGSDFAYI------------- 285
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW---ILND 128
DKF + + L L G+ ++ +N +G ML N F N+
Sbjct: 286 -DKFQD-STWLSLMHNRLELAYDFLSSQGSFYLHLD-NNANYLGRMLLNDIFGKENFRNE 342
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-------ALKAANEDVQMR 181
I+W SN M N G F ET++ S S K Y + + + MR
Sbjct: 343 IIWYYSNKMAN-SGNSFAKNTETILNYSKSEKYIFYRQKEPRSEPVLLSKREGRDGKNMR 401
Query: 182 ---------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
D I + +ER++N + TQKPE LL RI+ +S
Sbjct: 402 ARDENGKVIYELSHERYVDTLWDIPIIGSTSTERVKNNENL----TQKPEKLLKRIIQAS 457
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ I+LD F GSGT+ AVA KL+R +IGIEM + + + R+
Sbjct: 458 SDENSIVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFERVILPRLKK 504
>gi|325978568|ref|YP_004288284.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|325178496|emb|CBZ48540.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
Length = 424
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/273 (21%), Positives = 107/273 (39%), Gaps = 22/273 (8%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S L KL S+DL DPPYN+ G+ D + D
Sbjct: 162 EHRLMCGDSTNPDHLAKLLTGQSIDLYVTDPPYNVAYEGKTKAALTIPNDNLDD------ 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+A+ F + LK G ++ + T LQ + + ++W K +
Sbjct: 216 --QAFQTFLVDAFHNVDQYLKAGGVFYIWHADKERLAFSTALQQVGWLEKQALIWVKDSF 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------WLIP 187
+ + +Q HE ++ + + ++ ++ +S +
Sbjct: 274 VLG--RQDYQWQHEPCLYGWKPGASHYFVSDFSQSTILESQLETKSKQELIALIKTYQAN 331
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ R+ + HPT KP ALL R++ SS+K GD +LD F GSG++ ++L R
Sbjct: 332 QPTSILRVNRPTKNEDHPTMKPIALLERLIRSSSKRGDCVLDTFAGSGSTLLACERLGRK 391
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
+E++ Y+ R I+L
Sbjct: 392 SYSMELEPKYVARILNRFQQETGQVPIKLNKEE 424
>gi|317054701|ref|YP_004119768.1| YfbB [Escherichia coli]
gi|284433229|gb|ADB84968.1| YfbB [Escherichia coli]
Length = 228
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A+ D L G
Sbjct: 105 AAYVGYRHECAYILAKGSPARPRNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|317176865|dbj|BAJ54654.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
Length = 209
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 99/226 (43%), Gaps = 21/226 (9%)
Query: 44 FADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
DPPYN+ + + + WDK W+ ++ PNG +
Sbjct: 4 ITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF-------RLLEWIKRYAPLVNPNGCM 56
Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ SY I I L+ F + + I W K+NPM R + E +WA
Sbjct: 57 VIFCSYRFINYIADFLEENGFIVKDFIQWIKNNPMSKNINRCYVQDTEFALWAVKKKAKW 116
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
+ K NE P+ SG E+++ HPTQK AL+ +I+ T
Sbjct: 117 VF------NKPKNEKYLRPLILKSPVVSGLEKVK-------HPTQKSLALMEKIISIHTN 163
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P DI+LDPF GSGT+G K L R+FIGIE +++Y IA KR+
Sbjct: 164 PNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQIAKKRLNLF 209
>gi|193063119|ref|ZP_03044211.1| DNA methylase family protein [Escherichia coli E22]
gi|195940129|ref|ZP_03085511.1| putative methylase [Escherichia coli O157:H7 str. EC4024]
gi|192931378|gb|EDV83980.1| DNA methylase family protein [Escherichia coli E22]
Length = 227
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + R ++ TD W
Sbjct: 3 RFILGDCVRVMATFPDNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|148658589|ref|YP_001278794.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
RS-1]
gi|148570699|gb|ABQ92844.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
Length = 279
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/290 (24%), Positives = 117/290 (40%), Gaps = 55/290 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++II+G+ + L L +S+DL PPY D + D + K SF+
Sbjct: 10 LNRIIQGDCMEELAALSDESIDLTLFSPPY----------------DGIRD-YKKNWSFD 52
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSY--------HNIFRIGTMLQNLNFWILNDIVW 131
RV K G + VI FR+ + W L + V
Sbjct: 53 -----IVELGDQLYRVTKDGGVVVVIIGDGTRQFAKSLTSFRLAVSWVDEIGWKLFECVI 107
Query: 132 RKSNPMPN-FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ P + +RF+ HE ++ + K + ++ + + + + S
Sbjct: 108 YHRDGNPGAWWNQRFRVDHEYVLIFFKGERPKTFQKDHLMVPSKHAGK-IYSGTDRLTNG 166
Query: 191 GSERLRNK-------------------DGEKL---HPTQKPEALLSRILVSSTKPGDIIL 228
G +R+ K +G +L HP P+ L I++ ++PGDI+L
Sbjct: 167 GFKRITPKAVNPLKCRGTVWRYATSNTEGNRLKLQHPATFPDKLAEDIILCFSQPGDIVL 226
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS-VQPLGNIELT 277
DP GSGT+ +A+ +R FIGIE+ +Y +IA KR+A QP L
Sbjct: 227 DPMCGSGTTCVMARNHQRHFIGIEISPEYCEIAGKRLAMEHQPAEQQTLF 276
>gi|297380564|gb|ADI35451.1| type III restriction enzyme [Helicobacter pylori v225d]
Length = 572
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 70/352 (19%), Positives = 119/352 (33%), Gaps = 69/352 (19%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 168 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNF--------------N 213
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
++ F + L R L +G++++ Y+ + ++ + ++I+WR
Sbjct: 214 HSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFRSEIIWRMGF 273
Query: 136 -PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------------------- 174
+++ H+T+++ S S +
Sbjct: 274 LSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQE 333
Query: 175 -------------NEDVQMRSDWLIPICSGS--------------ERLRNKDGEKLHPTQ 207
+ D E + D Q
Sbjct: 334 KVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDEN--FKGQ 391
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KPEAL+SRIL ST D++LD F GSGT+ AVA K++R +IGIE I +R+
Sbjct: 392 KPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKK 451
Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
V ++ + + L E L QIL + + D
Sbjct: 452 VIGGEQGGISKKCDFKGGGSFVYAELKEVNLEVKKQILNAKSKSECLKIFND 503
>gi|224437420|ref|ZP_03658389.1| DNA methylase N-4/N-6 domain protein [Helicobacter cinaedi CCUG
18818]
gi|313143882|ref|ZP_07806075.1| DNA methylase N-4/N-6 [Helicobacter cinaedi CCUG 18818]
gi|313128913|gb|EFR46530.1| DNA methylase N-4/N-6 [Helicobacter cinaedi CCUG 18818]
Length = 274
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 67/287 (23%), Positives = 107/287 (37%), Gaps = 31/287 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I G+++S L+KL S+D+ PPYN Q N + + + L D D D+ +AY
Sbjct: 2 LICGDTLSELQKLENDSIDMGVTSPPYNKQENKRGWLVKNVLYDNTCDKLDE----KAYQ 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLN-FWILNDIVWRKSNPMPN 139
A L R+ K G+ + + + + W L + N
Sbjct: 58 ENQIAVLNELYRITKEGGSFFYNHKIRWEKGKLLHPLQWISQTKWNLRQEIIWDRGIAGN 117
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
RG RF E + W + A + R+R +
Sbjct: 118 IRGWRFWQIEERIYWLIKPKGKNLIGEELQSRHALLSSIW--------------RIRPES 163
Query: 200 GEKLHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HP P AL R + S G +++DP+ GSGT+G AK L FIGI+ + Y+
Sbjct: 164 NN-AHPAPFPLALPLRCIFSILNENGGVVIDPYCGSGTTGIAAKILNCDFIGIDNAKTYL 222
Query: 259 DIATKRIASVQPLGNI--------ELTVLTGKRTEPRVAFNLLVERG 297
+A RI + Q E+ ++ + + RG
Sbjct: 223 TLAESRITNYQHFLKEAQLELNLHEVKETFSEKKAKGKSKDRFALRG 269
>gi|164707731|gb|ABY67025.1| M.MjaVI [Methanocaldococcus jannaschii]
Length = 263
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 23/255 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + ++V LP +S+DLI PPYN+ ++ + D +E Y
Sbjct: 16 TLINDDFLNV--DLPNESIDLIVTSPPYNVGIDYNQH--------------DDTIPYEEY 59
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+T+ WL +LK +G L + I N I + ++ L+ ++ + N
Sbjct: 60 LDWTKQWLKKALTLLKKDGRLCLNIPLDKNKGGIKPVYADIVKIALDVGFKYQTTIIWNE 119
Query: 141 RGRRFQNAHETLIWASPSPKAKGY----TFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + A + + AS ++ K ++ + +
Sbjct: 120 QNISRRTAWGSFMSASAPYVIAPVETIVVLYKESWKKLSKGESDITKEEFIEWTNGLWTF 179
Query: 197 NKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ +K HP P L R + + GD +LDPF GSGT+ A KLRR IG+E+
Sbjct: 180 PGESKKRIGHPAPFPLELPKRCIKLFSYVGDTVLDPFLGSGTTAIAAYKLRRKAIGVEID 239
Query: 255 QDYIDIATKRIASVQ 269
+ Y ++A KR++
Sbjct: 240 EKYFELAIKRVSREC 254
>gi|94992621|ref|YP_600720.1| adenine-specific methyltransferase [Streptococcus pyogenes
MGAS2096]
gi|94546129|gb|ABF36176.1| Adenine-specific methyltransferase [Streptococcus pyogenes
MGAS2096]
Length = 283
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/267 (19%), Positives = 101/267 (37%), Gaps = 27/267 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I + + +L ++P V LI DPPY + R H+++ +
Sbjct: 24 NQIYHTDCMELLAQIPDNYVSLILTDPPYGISYRNHFARQPHAVLTG--------DTGID 75
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK-SNPMPN 139
Y+ F R+L+ N + + L+ F + N ++ K +
Sbjct: 76 YERF----ARESYRILRENSHAYFFTRFDCYPYHYDCLERAGFTVKNCLIVEKGTIGGIG 131
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDA-------LKAANEDVQMRSDWLIPICSGS 192
+ N E +I+ + +T + A E + G
Sbjct: 132 DLTGSYANNAEWIIFCQKGRRTFQHTTLLENRKKEGMQYHAGRERSKKYKTRFNACWFGE 191
Query: 193 ERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
E + K + HPT K LS ++ S+ G+++ D F G+G++ A + +
Sbjct: 192 EYPKATYNSVWQKQHQIYHPTIKNVECLSWLIQISSLQGELVFDGFMGTGSTALAAIQTQ 251
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
R+++G E+ + Y +IA RI V+
Sbjct: 252 RAYLGAEIDKAYFEIAQNRIKEVEKRN 278
>gi|283955714|ref|ZP_06373205.1| hypothetical protein C1336_000060025 [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792669|gb|EFC31447.1| hypothetical protein C1336_000060025 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 771
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/301 (18%), Positives = 112/301 (37%), Gaps = 49/301 (16%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
+S++N + ++ +++ E + +++K ++ L L +DLI+ DPP+N +
Sbjct: 355 LSEENYYKLLQSFDNLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFD 414
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
DKF + + L + L G+ ++ Y+ +R
Sbjct: 415 YK--------------DKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDYNANYRGRE 459
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA--------------------- 155
+L ++ + +F H+T+++
Sbjct: 460 LLNDIFGEENFVNEIVWNYKGTTNTNVKFAPKHDTILYYKTKSHIFNFDDVRIPYEDDDK 519
Query: 156 -SPSPKAKGYTFNYDALKAANEDVQMRSDW------LIPICSGSERLRNKDGEKL--HPT 206
S K Y + + + W + + + G++ T
Sbjct: 520 FSIDENGKYYMMWKKDQRYYPPQKFVNNTWILLGKSQYDVWNDIPSMATAHGKEFLNFQT 579
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
QK E LL RI+ +S+ I+LD F GSGT+ A A KL R ++G+EM + + + R+
Sbjct: 580 QKQEKLLQRIIKASSNENSIVLDFFTGSGTTIATAHKLERKWLGVEMGEHFYKVIIPRMK 639
Query: 267 S 267
Sbjct: 640 K 640
>gi|238027943|ref|YP_002912174.1| Csp231I DNA methyltransferase [Burkholderia glumae BGR1]
gi|237877137|gb|ACR29470.1| Csp231I DNA methyltransferase [Burkholderia glumae BGR1]
Length = 332
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 63/286 (22%), Positives = 101/286 (35%), Gaps = 45/286 (15%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ-------LYRPDHSLVDAVTDSWDKFSS 77
GN++ + K+P SV LI DPPY + G R D + V KF
Sbjct: 46 LGNALDEMRKIPDASVHLIATDPPYFIDGMGSDWNKTSLRTRTDKAGVVGSLPVGMKFDP 105
Query: 78 FEA--YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS- 134
+A + F R+LKP G R+ ++ F I + + W
Sbjct: 106 AQARAFQEFMEPIAKEAFRILKPGGFFIAFSQARLYHRLAVAAEDAGFEIRDMLAWHYEG 165
Query: 135 -------------------------NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + + + + E ++ A
Sbjct: 166 QAKAFSMNHFIAKMKISDADKQHLIDSIGGRKTPQLKPQMEPMVMAQKPRVGTFVENWKQ 225
Query: 170 ALKAANE------DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
+ + + S E+ + H T KP L+ ++ + P
Sbjct: 226 FETGLVDTTASLDGKFPGNVMDVAKPSRDEKGAGNE----HLTVKPVLLMEHLIRLFSIP 281
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
G ++LDPF GSGT+G A R FIG+E+ DY IA+KRIA+ +
Sbjct: 282 GQVVLDPFLGSGTTGVAAINTGREFIGVEIDPDYARIASKRIAAAR 327
>gi|321156960|emb|CBW38949.1| Cytosine specific DNA methyltransferase [Streptococcus phage V22]
gi|321157075|emb|CBW39062.1| Cytosine specific DNA methyltransferase [Streptococcus phage 34117]
gi|321157225|emb|CBW39209.1| Cytosine specific DNA methyltransferase [Streptococcus phage 8140]
Length = 231
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 30/251 (11%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
DKIIK + + +E +P +DLI DPPY + +R + V + + +
Sbjct: 4 DKIIKKDVLEFMETIPDNKIDLIVTDPPYLINYKTN-WRKEKHKFSNVIKNDNNPELIKE 62
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y + C R+LK + +++ S+ + ++ + N I+WRK+N
Sbjct: 63 Y-------IKECYRILKDDTAIYIFCSFDKVDFFKKEIEKYFS-VKNIIIWRKNNHTAGD 114
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+F +E +I A+ K ++ W S E L
Sbjct: 115 LEAQFGKQYEMIILANKGRKKFN-------------GERLTDVWDFKRVSSDELL----- 156
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
H QKP L+ R +V + GD + D F GSGT+ A + R FIG E+ + Y I
Sbjct: 157 ---HQNQKPIELIKRCIVKHSDVGDTVFDGFMGSGTTALAALETDRHFIGTEIDEYYFGI 213
Query: 261 ATKRIASVQPL 271
A +RI +
Sbjct: 214 AEERIKNHNAQ 224
>gi|219586051|ref|YP_002456145.1| putative methylase [Escherichia coli]
gi|226201029|ref|YP_002756641.1| DNA methylase family protein [Escherichia coli]
gi|218931634|gb|ACL12407.1| hemagglutinin-associated protein [Escherichia coli]
gi|219881658|gb|ACL52028.1| DNA methylase family protein [Escherichia coli]
Length = 227
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 41/248 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHHAG 201
Query: 262 TKRIASVQ 269
+R+A+VQ
Sbjct: 202 QQRLAAVQ 209
>gi|257088834|ref|ZP_05583195.1| predicted protein [Enterococcus faecalis CH188]
gi|256997646|gb|EEU84166.1| predicted protein [Enterococcus faecalis CH188]
gi|315160596|gb|EFU04613.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0645]
gi|315579442|gb|EFU91633.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
Length = 230
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 32/252 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFS 76
+KI + + ++++P KSVDL+ DPPY ++ G R S + + +
Sbjct: 3 LNKIYNEDCLEGMKRIPDKSVDLVIIDPPYLMKQGKSGGAFGRDKRSYHNEIESMTN--- 59
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
F R L RV+K L+V S + L+ + W K+NP
Sbjct: 60 ------DFERKVLDELVRVMKKI-NLYVWCSKDQLQGYINYFSQKGC-TLDLLTWHKTNP 111
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+P G+ + L + K G + +
Sbjct: 112 VPTCNGKYLSDTEYLLFFKEKGVKVFGSYSTKKKFYVTPTN------------------K 153
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP ++ ++++S++ +++LD F GSGT+ A R FIG E +++
Sbjct: 154 KDKDLYQHPTVKPLNIIENLVINSSQENEVVLDCFIGSGTTAVAAINTNRQFIGFEKEKE 213
Query: 257 YIDIATKRIASV 268
Y D A +RI +
Sbjct: 214 YFDTANRRIEEI 225
>gi|116006850|ref|YP_788033.1| putative methylase [Escherichia coli]
gi|115500705|dbj|BAF33936.1| putative DNA modification methylase [Escherichia coli]
Length = 227
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + +H I R ++ F + +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWHRIDRFMAAWKHAGFSVAGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A+ D L G
Sbjct: 105 SAYVAYRHECAYILAKGSPARPRNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+K L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKSVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|299135951|ref|ZP_07029135.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
gi|298602075|gb|EFI58229.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
Length = 305
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 110/295 (37%), Gaps = 52/295 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSF 78
+ I++G+S+S+L+ + S+DLI +D PY + + L+ +S + + DK +
Sbjct: 6 NTILEGDSVSLLKGVHDSSIDLILSDIPYGIGADDWDVLHDNTNSAYLGSSPAQDKAGAI 65
Query: 79 -------------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ Y + W RVLKP G+ V R ++
Sbjct: 66 FKKRGKPLNGWSEADRAIPKQYYDWCLTWAPDWLRVLKPGGSAIVFAGRRLSHRCVAAME 125
Query: 120 NLNFWILNDIVW----------------------RKSNPMPNFRGRRFQNAHETLIWASP 157
+ F + + W + ++ + E ++W
Sbjct: 126 DSGFTYKDMLGWLRDRAAHRAQRLSVVFERRGDFDNRDKWEGWKVGNLRPTFEPILWFVK 185
Query: 158 SPKAKGYTFNYDALKAA---NED--VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
+ NE ++ +S I G E LHPTQKP L
Sbjct: 186 PYPIGKTIADNVLNHGLGAFNERALLRYQSQPNNVIVCGME----SGEGGLHPTQKPVRL 241
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ ++ +T G ++LDPF GSG++ A+ R F+G E + +IA +R+
Sbjct: 242 MRALIELTTIEGQLVLDPFCGSGSTLVAAQASNRQFLGFEQDAHFCEIARERLDD 296
>gi|313885775|ref|ZP_07819522.1| DNA (cytosine-5-)-methyltransferase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619002|gb|EFR30444.1| DNA (cytosine-5-)-methyltransferase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 404
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 57/284 (20%)
Query: 24 IKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KGN++ L L V LI+ DPP+N + + ++ + +
Sbjct: 1 MKGNNLLALHSLKEKYAGKVKLIYIDPPFNT--------------EGDSFEYNDYFNHST 46
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ F + L +L +G +++ ++ + + + +
Sbjct: 47 WLTFMKNRLEIAHTLLDSDGLIYIHLDFNEVHYLKILADEIFGRKNFLNEIIWCYQERET 106
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
R F H+++++ + K YTFN + ++ +V ++ + RLR KDG
Sbjct: 107 SKRFFNRKHDSILFYAK-DKETDYTFNNELIREKYSEVTLKKFKYLDSEGRKYRLRTKDG 165
Query: 201 EK---------------------------------------LHPTQKPEALLSRILVSST 221
+ TQKPE L+ + +++ +
Sbjct: 166 KSDPAQEDDNTYRQYLDAQSGPLPRDWFMIPFLNQASSERVGFNTQKPEELIKKFILAGS 225
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
GDIILD F GSGT+ +VA KL R +IGIE DI R+
Sbjct: 226 NEGDIILDFFAGSGTTLSVAHKLNRKYIGIEQMDYIKDITVPRL 269
>gi|305667807|ref|YP_003864281.1| DNA methylase family protein [Escherichia coli]
gi|304655556|emb|CBM42214.1| DNA methylase family protein [Escherichia coli]
Length = 227
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|163846816|ref|YP_001634860.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222524637|ref|YP_002569108.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163668105|gb|ABY34471.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222448516|gb|ACM52782.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
Length = 329
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/276 (20%), Positives = 102/276 (36%), Gaps = 53/276 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ G+ + ++P +S+ LI PPYNL + S EAY
Sbjct: 25 IMSGDVSECIAQIPDRSIALIVTSPPYNLGKAYEDRV-----------------SIEAYL 67
Query: 83 AFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNLNF-----WILNDIVWRKSNP 136
+ RVL+ +G+ W +G++ + + +
Sbjct: 68 QTQAELIAQLCRVLRDDGSICWQVGNFVEHGEVYPLDILYYPIFKRLGLRLRNRIVWKFG 127
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMRS-- 182
+RF +ET++W + + Y FN DA K N+ +
Sbjct: 128 HGLHASKRFSGRYETILWFTK---SDHYIFNLDAVRVPAKYPGKRHFKGPNKGRPSGNPL 184
Query: 183 -------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
DW + N + +HP Q P L+ R +++ T GD++ D
Sbjct: 185 GKNPSDVWEILERDWEELVWDIPNVKSNHPEKTIHPCQFPIELVERCVLALTNEGDMVFD 244
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
P+ G G++ A +R +G + + Y++IA +R+
Sbjct: 245 PYMGVGSTLIAALMHQRRAVGCDKEATYVEIARQRV 280
>gi|317133966|ref|YP_004089877.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
gi|315450428|gb|ADU23991.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
Length = 361
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 28/251 (11%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
++ ++L KL +S D+I DPPY + G + + + D F+ D
Sbjct: 134 HADAKTILNKLKTESFDMILTDPPYRVISGGTGGKNAPKGMLSKND----GKIFDNNDIQ 189
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
++ C RVLKP+ + ++ N+ ++ +Q F + N +VW K+N PN
Sbjct: 190 FDEYIPECYRVLKPDRQAYFFTNFLNLQQLIEAVQRSGFKVHNLLVWLKNNATPNR---- 245
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
W + + + + A +N + + N G KLH
Sbjct: 246 ---------WYMKNCENVLFCYKGKAKAISNCGSKTVHQFD-----------NIKGPKLH 285
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
T+KP LL + +ST+ G+ ILDPF GSG++ A + L R E+ + Y+++ R
Sbjct: 286 ETEKPVELLKMYIENSTEEGEWILDPFAGSGSTMAASLLLNRKVFTCEIDKKYLNVIKTR 345
Query: 265 IASVQPLGNIE 275
S+ G +
Sbjct: 346 AISILKSGEDD 356
>gi|291546437|emb|CBL19545.1| DNA modification methylase [Ruminococcus sp. SR1/5]
Length = 248
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 44/265 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++G+ + ++ ++P S+D++ +D PY WD + +
Sbjct: 5 TLLQGDCLELMNRIPDSSIDMVLSDLPYGT----------------TRCRWDAPINLQE- 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
W RRV+K NG + + + ++ + + +WRK+ P
Sbjct: 48 -----LW-EQYRRVVKENGAIALFSAQ---PFTTELISSNKAMYRYEWIWRKTQPSGFMN 98
Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNY-----------------DALKAANEDVQMRSD 183
++ HE + P + + E
Sbjct: 99 AKKMPLRTHENIEIFYRKPPTYNPQMTHGHQRKTATAYGTRESDGSSCYGREERNYTYDS 158
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ ++LHPTQKP LL ++ + T PG+ +LD G+G++G
Sbjct: 159 TDRYPVDVLQYSTGDKSKRLHPTQKPVDLLEYLVKTYTNPGETVLDNCMGAGSTGVACLN 218
Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
R F+GIE+ +Y IA +RI
Sbjct: 219 TGREFVGIELDPEYYQIAKERIEQH 243
>gi|281491531|ref|YP_003353511.1| phage DNA methylase [Lactococcus lactis subsp. lactis KF147]
gi|281375249|gb|ADA64762.1| Phage protein, DNA methylase [Lactococcus lactis subsp. lactis
KF147]
Length = 252
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 59/267 (22%), Positives = 94/267 (35%), Gaps = 49/267 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + + ++++P SVD+I D PY SWD FE
Sbjct: 4 LNKIYNEDCLEGMKRIPDGSVDMILCDLPYGT----------------TNCSWDIIIPFE 47
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
R++K NG + + G+ + + D +W K
Sbjct: 48 -------KLWKQYNRIIKDNGAIVLTGAEPFSSHLRL---SNLKLYKYDWIWDKVKGTGF 97
Query: 140 FRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG------- 191
++ HE + + T+N N RS G
Sbjct: 98 LNAKKQPMRNHEIVSVFYKNQP----TYNPQKTSGHNLKTSFRSSEHQTDVYGEMKQDYT 153
Query: 192 ---SERLR--------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ER + LHPTQKP AL ++ + T GD +LD GSGT+
Sbjct: 154 YSSTERYPRSIQIFSTDTQNSSLHPTQKPVALFEYLIKTYTNKGDTVLDNCMGSGTTAVA 213
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
R+FIG E ++Y + + +RI +
Sbjct: 214 CLNTERNFIGFETNEEYYNKSLQRIKN 240
>gi|162417875|ref|YP_001604638.1| putative methylase [Yersinia pestis Angola]
gi|162350847|gb|ABX84796.1| DNA methylase [Yersinia pestis Angola]
Length = 225
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 41/252 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+GN + ++ P +VD I DPPY + D + + +
Sbjct: 3 RFIQGNCVHIMSGFPDNAVDFILTDPPY---------------IVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACHEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + N+ + G
Sbjct: 105 AAYVGYRHECAYILAKGRPPLP-------QNPLNDVIAW----------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T PG I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGN 273
+R+A+V+
Sbjct: 202 QQRLAAVRRAMQ 213
>gi|56404028|ref|NP_858331.2| putative methylase [Shigella flexneri 2a str. 301]
gi|309783591|ref|ZP_07678241.1| DNA methylase family protein [Shigella dysenteriae 1617]
gi|56383106|gb|AAL72431.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|281603957|gb|ADA76940.1| hypothetical protein SFxv_5045 [Shigella flexneri 2002017]
gi|308928487|gb|EFP73944.1| DNA methylase family protein [Shigella dysenteriae 1617]
gi|333006557|gb|EGK26058.1| DNA methylase family protein [Shigella flexneri K-218]
gi|333017307|gb|EGK36626.1| DNA methylase family protein [Shigella flexneri K-304]
gi|333017399|gb|EGK36715.1| DNA methylase family protein [Shigella flexneri K-227]
Length = 227
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|193070202|ref|ZP_03051147.1| DNA methylase family protein [Escherichia coli E110019]
gi|192956521|gb|EDV86979.1| DNA methylase family protein [Escherichia coli E110019]
Length = 227
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P+ +VD I DPPY + R ++ TD W
Sbjct: 3 RFILGDCVRVMATFPSNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|126698701|ref|YP_001087598.1| modification DNA methylase [Clostridium difficile 630]
gi|115250138|emb|CAJ67959.1| DNA-methyltransferase, cytosine-N4-specific; Tn1549-like,
CTn4-Orf10 [Clostridium difficile]
Length = 319
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/319 (20%), Positives = 106/319 (33%), Gaps = 85/319 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II ++++ L++LP++SV PPY + + + + +
Sbjct: 4 DVIINRDALAALKELPSESVHCCVTSPPYYALRDY-----------GLDAQIGQEDTPKQ 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSY--------------------------HNI--- 111
Y A RVL+ +GTLW+ + N
Sbjct: 53 YIDRLTAVFGELYRVLRKDGTLWLNIADTYCSTGNKGCYADPKNPKGRTGQRIARNSRVI 112
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ +DI+W+K NPMP R +E + S K
Sbjct: 113 GCKQKDLIGIPWLLAFSLREQGWYLRSDIIWQKQNPMPESCKDRPTRCYEHIFLLSKEKK 172
Query: 161 AK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------ 197
T + + G R R+
Sbjct: 173 YYYDAAAIAEPLAPTTAERYRRARSTNSKYTQEIPGQGKVQGLNRPRDGGYYDDALMPTT 232
Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ H P L +++ G I++DPFFGSGT+G AK L R
Sbjct: 233 RNKRDVWLINTVPYKGAHFAAFPPKLAETCILAGCPKGGIVIDPFFGSGTTGFAAKSLDR 292
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IGIE+ +Y +A RI
Sbjct: 293 HYIGIELNAEYCALARARI 311
>gi|28199223|ref|NP_779537.1| DNA methylase [Xylella fastidiosa Temecula1]
gi|182681950|ref|YP_001830110.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
M23]
gi|28057329|gb|AAO29186.1| DNA methylase [Xylella fastidiosa Temecula1]
gi|182632060|gb|ACB92836.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
gi|307578213|gb|ADN62182.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 237
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 32/244 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSW 72
++ +G+++ +L + + SVD + DPPY + Y + + A
Sbjct: 10 RLHEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDC 69
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D F + A++ WL CRRV +P G L V + + + +Q+ + +VW
Sbjct: 70 D-FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWD 128
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K+ GR A E ++WAS M G
Sbjct: 129 KTPACRPQLGRFRSQA-EFIVWASCG--------------------LMNPKAHPVTPVGV 167
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
EK H KP AL+ ++ P +LDPF GSGT+G A + FIG+
Sbjct: 168 FSTGTAAREKRHQVGKPLALMEHLVKIV-PPASTVLDPFAGSGTTGVAALRAGHRFIGMV 226
Query: 253 MKQD 256
+ +
Sbjct: 227 IGME 230
>gi|298369799|ref|ZP_06981115.1| DNA (cytosine-5-)-methyltransferase [Neisseria sp. oral taxon 014
str. F0314]
gi|298281259|gb|EFI22748.1| DNA (cytosine-5-)-methyltransferase [Neisseria sp. oral taxon 014
str. F0314]
Length = 302
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 114/303 (37%), Gaps = 50/303 (16%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-----------QLYRPDHSL 64
+ + + +I G+ +++K+P + + DPPYN + G + R ++S
Sbjct: 1 MNDIINSVIHGDCRDIMKKIPNEFISSCVTDPPYNYEFIGHNNWDEKEIQRRKNRINNSS 60
Query: 65 VDAV---------------TDSWDKF--SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ + + W K + Y + W R+ KP ++ + S
Sbjct: 61 NNTLIKHIPYGSGLSGGVRNEKWYKKNRDNILEYQQWCLDWGAELFRICKPGASVVIFNS 120
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP---NFRGR----------------RFQNA 148
+ + L+ F+ + IV+R+++ +P N + + +N
Sbjct: 121 TRTVAHVQVALEQAGFYTRDIIVYRRASGIPKGLNLKRKLEKQGYYNKNAEGLHSCLRNE 180
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
E + K + + I ++ D +H T K
Sbjct: 181 WEAICVLQKPLKNNYLQTYIEYGTGLFYTKMKNGGFRSNIIENIKKDAPLDFN-IHTTIK 239
Query: 209 PEALLSRILVSS--TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
P L+ +L I+LDPF GSGT+ AKK+ +F+GIE++ YI+I KR+
Sbjct: 240 PLDLMINLLDIFVPKNENAIVLDPFSGSGTTLVAAKKMGINFLGIEIEPKYIEIINKRLE 299
Query: 267 SVQ 269
Q
Sbjct: 300 LSQ 302
>gi|108563753|ref|YP_628069.1| putative type III restriction enzyme M protein [Helicobacter pylori
HPAG1]
gi|107837526|gb|ABF85395.1| putative type III restriction enzyme M protein [Helicobacter pylori
HPAG1]
Length = 569
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 69/336 (20%), Positives = 118/336 (35%), Gaps = 65/336 (19%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 165 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNF--------------N 210
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L R L +G++++ Y+ + ++ +
Sbjct: 211 HSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFGVENFQREIIWRIGW 270
Query: 138 PNFRGRRFQN---AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ N H+T+++ S + + Y K E +++ G +R
Sbjct: 271 LSGYKTSINNFIRNHDTILFYSKNADKLFFNKKYIENKDFKELIKIEKIQSNLDNLGIDR 330
Query: 195 LRNKDGEKL--HPT-------------------------------------------QKP 209
+ K+ K+ H T QK
Sbjct: 331 EKQKNIIKIINHETRPKRYPLEDIWNGNEYDDLNSIAIVSYSGETVSKMLGTEEIKGQKS 390
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E L+ RIL +ST D++LD F GSGT+ AVA K++R +IGIE I +R+ V
Sbjct: 391 EKLIQRILEASTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVI 450
Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
++ + + L E L QIL
Sbjct: 451 EGEQGGISKKCDFKGGGSFVYAELKEVNLEIKKQIL 486
>gi|167554071|ref|ZP_02347812.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205321633|gb|EDZ09472.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
Length = 225
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 41/252 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+GN + ++ P +VD I DPPY + R ++ TD W + +S
Sbjct: 3 RFIQGNCVHIMSGFPDNAVDFILTDPPYLVGFRD---RQGRTIAGDKTDEWLQPASH--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + L ++ + R + F ++ +V+ K+ +
Sbjct: 57 ---------EMYRVLKKDALLISFYGWNRVDRFMAAWKKAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T PG I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRTG 201
Query: 262 TKRIASVQPLGN 273
+R+A+V+
Sbjct: 202 QQRLAAVRRAMQ 213
>gi|304383381|ref|ZP_07365847.1| DNA (cytosine-5-)-methyltransferase [Prevotella marshii DSM 16973]
gi|304335549|gb|EFM01813.1| DNA (cytosine-5-)-methyltransferase [Prevotella marshii DSM 16973]
Length = 439
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 53/261 (20%), Positives = 101/261 (38%), Gaps = 34/261 (13%)
Query: 21 DKIIKGNSI---SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++++ G+ V+ L V D+I DPPYN+ G D++ +
Sbjct: 190 NRLMCGDCRAKKDVVA-LMNGRVADMILTDPPYNVNYEGGGDNKLTIQNDSMEND----- 243
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F ++ ++KP G+ +V + ++ F I +W K
Sbjct: 244 ---LFLRFLQSVFNMMFTIIKPGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWAKDTL 300
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + +Q HE ++ A + + N D
Sbjct: 301 VMG--RQDYQWQHEPCLYGWKPGAAHFWNADRKQTTIWNFDKP----------------- 341
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K+HPT KP AL++ + +STK G+I++D F GSG++ ++ R G+E+
Sbjct: 342 --KANKIHPTMKPVALMAYPITNSTKNGNIVVDMFSGSGSTIMACQQTDRIGYGMEIDPK 399
Query: 257 YIDIATKRIASVQPLGNIELT 277
Y+ +R ++ P + L
Sbjct: 400 YVAATVRRFMAMFPQQPVLLE 420
>gi|160938499|ref|ZP_02085854.1| hypothetical protein CLOBOL_03397 [Clostridium bolteae ATCC
BAA-613]
gi|167771762|ref|ZP_02443815.1| hypothetical protein ANACOL_03134 [Anaerotruncus colihominis DSM
17241]
gi|225375443|ref|ZP_03752664.1| hypothetical protein ROSEINA2194_01068 [Roseburia inulinivorans DSM
16841]
gi|239623005|ref|ZP_04666036.1| modification DNA methylase [Clostridiales bacterium 1_7_47_FAA]
gi|158438872|gb|EDP16629.1| hypothetical protein CLOBOL_03397 [Clostridium bolteae ATCC
BAA-613]
gi|167666402|gb|EDS10532.1| hypothetical protein ANACOL_03134 [Anaerotruncus colihominis DSM
17241]
gi|225212733|gb|EEG95087.1| hypothetical protein ROSEINA2194_01068 [Roseburia inulinivorans DSM
16841]
gi|239522584|gb|EEQ62450.1| modification DNA methylase [Clostridiales bacterium 1_7_47FAA]
Length = 319
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 66/319 (20%), Positives = 104/319 (32%), Gaps = 85/319 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP +SV PPY + + + + E
Sbjct: 7 DTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDMQIGREDTPEQ 55
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG----------SYHNI------------------- 111
Y RRVL+ +GTLW+ YH
Sbjct: 56 YIDRLTEVFRELRRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIAKNNRVS 115
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ +DI+W+K NPMP R +E + + S K
Sbjct: 116 GCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTKSKK 175
Query: 161 AK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------ 197
T + G R R+
Sbjct: 176 YFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEVPGQGKVQGLNRARSGSYYDEALMPTM 235
Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ H P L + + G ++LDPFFGSGT+GA A++L R
Sbjct: 236 RNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAARQLDR 295
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IGIE+ +Y +A RI
Sbjct: 296 HYIGIEINAEYCALARARI 314
>gi|209543239|ref|YP_002275468.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530916|gb|ACI50853.1| DNA methylase N-4/N-6 domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 223
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 61/250 (24%), Positives = 99/250 (39%), Gaps = 41/250 (16%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+++ I G+S+S++ +P SVD I DPPY + G+ R + +A
Sbjct: 9 FRNVIRHGDSVSLMRAMPRGSVDFILTDPPYLVGYQGRDGRTVRNDDNA----------- 57
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ R RVLK G S+ + + F ++ +V+RKS
Sbjct: 58 ----AWLRPAFSQMHRVLKEGGFAVSFYSWTKVHLFVDAWRAAGFRVVGHLVFRKSYAS- 112
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
R + +HE + D +
Sbjct: 113 --SARFLRYSHEQAYLLAKGDAKLPRQPIPDVIDM-----------------------PY 147
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G KLHPTQKP A L ++ + G I DPF GSG+S A+ L R ++G+E+ + +
Sbjct: 148 SGNKLHPTQKPVAALLPLVHAFCPVGGITFDPFCGSGSSLVAAQHLGRDWLGMELDETHA 207
Query: 259 DIATKRIASV 268
A++R+A
Sbjct: 208 ATASRRLAYW 217
>gi|254674319|emb|CBA10103.1| putative adenine-specific DNA-modification methylase [Neisseria
meningitidis alpha275]
Length = 243
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/257 (22%), Positives = 93/257 (36%), Gaps = 39/257 (15%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
++K+ S + PPYN+ + E Y + W+ +
Sbjct: 1 MDKISKGSFQMTITSPPYNIGKEYESIL-----------------DLEHYLEWCERWMQS 43
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR-----GRRFQ 146
+ + +G W+ Y ++ + G + + + N+ RF
Sbjct: 44 IHHLTEDSGCFWLNLGYLHVEKKGLAVPIPYLLWDKTNFFLLQEVVWNYAAGVACRNRFS 103
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAAN--------EDVQMRS-------DWLIPICSG 191
+E L+W YTFN DA++ N + D
Sbjct: 104 PRNEKLLWYVK--NPAKYTFNLDAVRDPNVKYPNQKKNGKLKCNPLGKNPTDVWQIAKVT 161
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
S R R+ HP Q P L+ RI+ +S+ D+ILDPF GSGT+ K R IG
Sbjct: 162 SGRNRSSRERTAHPAQFPLELIERIIRASSNQNDVILDPFIGSGTTALAGLKNNRFVIGF 221
Query: 252 EMKQDYIDIATKRIASV 268
E+ +YIDI +R
Sbjct: 222 EINDEYIDIIKERFKEY 238
>gi|168770617|ref|ZP_02795624.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
gi|300993882|ref|ZP_07180587.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
gi|189360495|gb|EDU78914.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
gi|300305030|gb|EFJ59550.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
Length = 227
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+ +VQ
Sbjct: 202 QQRLTAVQRAMQQ 214
>gi|145301515|ref|YP_001144354.1| putative methylase [Aeromonas salmonicida subsp. salmonicida A449]
gi|142856397|gb|ABO92606.1| DNA methylase [Aeromonas salmonicida subsp. salmonicida A449]
Length = 214
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 92/248 (37%), Gaps = 41/248 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + G+S+ ++ P +VD I DPPY L G R S+ + V D W
Sbjct: 3 RFMLGDSVQIMSTFPGAAVDFILTDPPY---LVGFKDRSGRSIANDVNDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLKP+ ++ + + F ++ +V+ KS +
Sbjct: 51 ---VLPAFTQMYRVLKPHSLAVSFYGWNRVDTFMAAWKQAGFRVVGHLVFTKSYAS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D + A G
Sbjct: 105 AAFIGYRHECAYLLAKGRPQVPAQPLPDVMPWA-----------------------YSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP + L ++ S T+PGDI+LDPF GSG++ A K R +IGIE+ Y
Sbjct: 142 RHHPTEKPVSALQPLIESFTRPGDIVLDPFAGSGSTCVAAAKCGRRYIGIELLPHYHQAG 201
Query: 262 TKRIASVQ 269
R+
Sbjct: 202 LNRLNLAN 209
>gi|109899594|ref|YP_662849.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
gi|109701875|gb|ABG41795.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
Length = 218
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 37/248 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ + +++ L+ LPA SVDL+ DPPY + G R HS ++ W
Sbjct: 2 RLFQQDAVEWLQSLPANSVDLVITDPPYESLEKHRAKGTTTRLKHSKSS--SNEWFAIFP 59
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + RVLK N ++ +F I + + F +VW K
Sbjct: 60 NTRFIEL----VAEIYRVLKHNSHFYLFCDQETMFVIKPLAEAAGFKFWKPLVWDKCAIG 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y Y+ + + + D +P +R+
Sbjct: 116 MGY----------------------HYRARYEFILFFEKGKRKLQDLSMPDVLQEKRVW- 152
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PT+KP L+ +++V S+ GD+++DPFFGSG + A+ R + G ++
Sbjct: 153 ----RGYPTEKPVPLIEKLIVQSSSEGDLVIDPFFGSGATLVAAQNCNREWQGADLSPSA 208
Query: 258 IDIATKRI 265
+ A KR+
Sbjct: 209 HEHAVKRL 216
>gi|209921999|ref|YP_002296072.1| putative methylase [Escherichia coli SE11]
gi|209915177|dbj|BAG80250.1| conserved hypothetical protein [Escherichia coli SE11]
Length = 227
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|323974648|gb|EGB69764.1| DNA methylase [Escherichia coli TW10509]
Length = 227
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 41/248 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DDWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQ 269
+R+A+VQ
Sbjct: 202 QQRLAAVQ 209
>gi|302595326|ref|YP_003829041.1| putative methylase [Escherichia coli]
gi|302310062|gb|ADL13935.1| YubD [Escherichia coli]
Length = 227
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFIQGDCVRVMATFPGNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|281425066|ref|ZP_06255979.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris F0302]
gi|281400910|gb|EFB31741.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris F0302]
Length = 442
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/264 (18%), Positives = 102/264 (38%), Gaps = 32/264 (12%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++++ G+ V + ++ D+I DPPYN+ G D++ +
Sbjct: 193 NRLMCGDCRAKKDVAALMNGRTADMILTDPPYNVNYEGGGEGKLTIQNDSMEND------ 246
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F ++ ++KP G+ +V + ++ F I +W K + +
Sbjct: 247 --LFLRFLQSVFNVMFAIVKPGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV 304
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ +Q HE ++ A + + N D
Sbjct: 305 MG--RQDYQWQHEPCLYGWKPGAAHFWNADRKQTTIWNFDKP------------------ 344
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
++HPT KP AL++ + +STK GD+++D F GSG++ ++ R G+E+ Y
Sbjct: 345 -KANRIHPTMKPIALMAYPITNSTKNGDVVVDLFSGSGSTIMACQQTDRIGYGMEIDPKY 403
Query: 258 IDIATKRIASVQPLGNIELTVLTG 281
+ +R ++ P + L
Sbjct: 404 VAATVRRFMAMFPQQPVLLERNGN 427
>gi|163731832|ref|ZP_02139279.1| hemagglutinin-associated protein [Roseobacter litoralis Och 149]
gi|161395286|gb|EDQ19608.1| hemagglutinin-associated protein [Roseobacter litoralis Och 149]
Length = 226
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 41/261 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++II G++ +VL+ + S+DL+ DPPY + + R + +
Sbjct: 4 NQIIHGDAAAVLKTIEEGSIDLVITDPPYLVNYKDRQGRSLQNDNNPGG----------- 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
R +K N + + + + I+++IVW K
Sbjct: 53 ----VLPVFEPMARAMKQNSYAICFSGWSALPQFTQAWEAAGLKIVSEIVWSKKY---TS 105
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
R Q HE+ + AK M S G
Sbjct: 106 RRGFTQYRHESAYVLAKGNPAKPV-------------RPMSSVQGWVY----------SG 142
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HPT+K +L+ ++ ++PGD++ DPF GSG++ A R ++GIE+++ + D
Sbjct: 143 NKRHPTEKAVEILAPLVRCFSRPGDLVCDPFSGSGSTSVAAVLNGRDYLGIELEKAHCDT 202
Query: 261 ATKRIASVQPLGNIELTVLTG 281
A R+A Q + + T
Sbjct: 203 ARARLAGAQRYRSEQATQNQK 223
>gi|9507765|ref|NP_061431.1| putative methylase [Plasmid F]
gi|300824693|ref|ZP_07104799.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
gi|81625266|sp|Q9S4X2|YUBD_ECOLI RecName: Full=Putative methylase yubD
gi|5702169|gb|AAD47178.1| putative methyltransferase [Escherichia coli]
gi|8918875|dbj|BAA97922.1| yfeA [Plasmid F]
gi|300522783|gb|EFK43852.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
gi|324115775|gb|EGC09709.1| DNA methylase [Escherichia coli E1167]
Length = 227
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFIQGDCVRVMATFPGNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|194709109|pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
gi|194709110|pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
Length = 297
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 52/279 (18%), Positives = 88/279 (31%), Gaps = 31/279 (11%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++ G++ VL P SV L+ PPY + +EA
Sbjct: 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPG----------QLGHIEDYEA 71
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ R+L P G L ++ + R + + V + N
Sbjct: 72 FLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNL 131
Query: 141 R---GRRFQNAHETLI---WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ NA + P G + + R
Sbjct: 132 NPIIWHKHTNASLEVEGRGVFLGKPYEPGAIIKTEIEYILXQRKPGGYRKPTQEQREKSR 191
Query: 195 LRNKD---------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
L +D K HP P L R++ + GD++LDPF G+GT+
Sbjct: 192 LPKEDFHRFFRQIWDDIPGESTKDHPAPFPLELAERLVRXFSFVGDVVLDPFAGTGTTLI 251
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
A + R +G+E+ Y +A +R A P ++E+
Sbjct: 252 AAARWGRRALGVELVPRYAQLAKERFAREVPGFSLEVLD 290
>gi|157364418|ref|YP_001471185.1| DNA methylase N-4/N-6 domain-containing protein [Thermotoga
lettingae TMO]
gi|157315022|gb|ABV34121.1| DNA methylase N-4/N-6 domain protein [Thermotoga lettingae TMO]
Length = 412
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 53/293 (18%), Positives = 96/293 (32%), Gaps = 45/293 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G+S + ++ +SVDLI PPY + + S Y
Sbjct: 6 KIIIGDSRK-MPEIDDESVDLIVTSPPYWHIKDY-----------GIKGQIGYGQSLHEY 53
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIVWRKSNP 136
C RVLKP L + R + + + +
Sbjct: 54 LKDLYRVWNECFRVLKPGRRLCINIGDQFARSAIYGRYKIIPLHAEIVAQCEDIGFDYMG 113
Query: 137 MPNFRGRRFQNA---------------------HETLIWASPSPKAKGYTFNYDALKAAN 175
++ + N +E ++ K+ + +
Sbjct: 114 SIIWQKKTTMNTSGGANVMGSYPYPPNGMIEIDYEFILIFKKPGKSSKASADIKEKSKLT 173
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
++ + G++++ H PE L R++ T GD +LDPF GSG
Sbjct: 174 KEEWKEYFYGHWYFGGAKQI-------GHEAMFPEELPRRLIKMYTFVGDTVLDPFLGSG 226
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
T+ ++ ++ R+ IG E+ ++ + +I S + L V KR
Sbjct: 227 TTAKMSLEIGRNAIGYEINDKFLTVIENKIESKKNLFQSNFNVEIIKREHKIN 279
>gi|257453086|ref|ZP_05618385.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
3_1_5R]
gi|257462768|ref|ZP_05627176.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D12]
Length = 314
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 68/313 (21%), Positives = 106/313 (33%), Gaps = 80/313 (25%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI+ G+ L+ + +S+D I PPY + V++ S E Y
Sbjct: 2 KIMHGDCSEYLKTIKTESIDCIVTSPPYWQLRDY-----------GVSNQIGMEESIEEY 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIF----------------------------- 112
+ RVLK +GT ++
Sbjct: 51 IDKLMNIMNELYRVLKKSGTFFLNLGDTYSNVNSKFYPANKMKDNKFSWIEGTVVSRKTN 110
Query: 113 -----------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
R+ + + + + N+I+W K N +P RF N E + + + S K
Sbjct: 111 ILRKSKMMIPERLSIRMIDSGWILRNEIIWHKPNALPESLTDRFTNDFEKIFFFTKSQKY 170
Query: 162 KGYTFNY----DALKAANEDVQMRSDWLI-------------------------PICSGS 192
L + + + +
Sbjct: 171 YFQKQYEPYSEKTLHSFKDGIMPTGKKKMLSAGESKMAMKKIDKPWRAVYNEKGRNMRTV 230
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ NK + H PE L+ R L+S I+LDPF GSGT+ VAK L + IGIE
Sbjct: 231 WSIANKGLREGHYASFPEKLVERCLLSGCPQNGIVLDPFLGSGTTLKVAKNLNLNGIGIE 290
Query: 253 MKQDYIDIATKRI 265
+K++YIDIA RI
Sbjct: 291 LKKEYIDIAVHRI 303
>gi|209916856|ref|YP_002291176.1| putative methylase [Escherichia coli SE11]
gi|209915282|dbj|BAG80354.1| conserved hypothetical protein [Escherichia coli SE11]
gi|324017660|gb|EGB86879.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
Length = 227
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|220905504|ref|YP_002480816.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219869803|gb|ACL50138.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 285
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 31/257 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
++G+ I++L+ + + SVD FADPP+NL + D+ +DK Y
Sbjct: 29 LEGDCINILKNIKSNSVDTFFADPPFNLNKKYGVKSNDN--------KYDK-----EYIE 75
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
+ +W+ R+LKP G ++ +G+ L + + I +P +
Sbjct: 76 WCYSWISEGIRILKPGGAFFIYNLPKWNMILGSYLTSAGLLFRHWIAVSMKLSLPIPKRL 135
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE---------- 193
AH +L++ + + +++
Sbjct: 136 Y--PAHYSLLYFTKGAPKTFNKIRTPIELCRHCGKEIKDYGGHRKSMNPNGVNLSDVWND 193
Query: 194 ----RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
R K Q LL RI++ +T GDI++DPF G GT+ AV + R +I
Sbjct: 194 IAPVRHHKFKHNKRTENQLSTKLLERIILMTTNEGDIVVDPFGGGGTTFAVCEAKLRRWI 253
Query: 250 GIEMKQDYIDIATKRIA 266
GIE++ I +RI
Sbjct: 254 GIEIED--ITPIKERIE 268
>gi|16082855|ref|NP_395409.1| putative methylase [Yersinia pestis CO92]
gi|31795413|ref|NP_857866.1| putative methylase [Yersinia pestis KIM]
gi|45478689|ref|NP_995545.1| putative methylase [Yersinia pestis biovar Microtus str. 91001]
gi|52788188|ref|YP_094016.1| putative methylase [Yersinia pestis]
gi|108793616|ref|YP_636775.1| putative methylase [Yersinia pestis Antiqua]
gi|108793820|ref|YP_636667.1| putative methylase [Yersinia pestis Nepal516]
gi|145597307|ref|YP_001154780.1| putative methylase [Yersinia pestis Pestoides F]
gi|149192726|ref|YP_001293957.1| putative methylase [Yersinia pestis CA88-4125]
gi|161484926|ref|NP_857710.2| putative methylase [Yersinia pestis KIM]
gi|165928425|ref|ZP_02224257.1| DNA methylase [Yersinia pestis biovar Orientalis str. F1991016]
gi|165939441|ref|ZP_02227988.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
gi|165940200|ref|ZP_02228731.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
gi|165940237|ref|ZP_02228766.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
gi|166012173|ref|ZP_02233071.1| DNA methylase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214386|ref|ZP_02240421.1| DNA methylase [Yersinia pestis biovar Antiqua str. B42003004]
gi|167402238|ref|ZP_02307709.1| DNA methylase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167422985|ref|ZP_02314738.1| DNA methylase [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167467603|ref|ZP_02332307.1| putative DNA methylase [Yersinia pestis FV-1]
gi|229897032|ref|ZP_04512191.1| putative DNA methylase [Yersinia pestis Pestoides A]
gi|229897786|ref|ZP_04512941.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229900345|ref|ZP_04515479.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229904783|ref|ZP_04519893.1| putative DNA methylase [Yersinia pestis Nepal516]
gi|270490952|ref|ZP_06208025.1| DNA (cytosine-5-)-methyltransferase [Yersinia pestis KIM D27]
gi|294502064|ref|YP_003565801.1| putative DNA methylase [Yersinia pestis Z176003]
gi|3883083|gb|AAC82743.1| unknown [Yersinia pestis KIM 10]
gi|5834748|emb|CAB55246.1| putative DNA methylase [Yersinia pestis CO92]
gi|45357342|gb|AAS58736.1| putative DNA methylase [Yersinia pestis biovar Microtus str. 91001]
gi|52538117|emb|CAG27543.1| putative hemagglutinin-associated protein [Yersinia pestis]
gi|108777884|gb|ABG20402.1| DNA methylase [Yersinia pestis Nepal516]
gi|108782163|gb|ABG16220.1| DNA methylase [Yersinia pestis Antiqua]
gi|145213075|gb|ABP42480.1| DNA methylase [Yersinia pestis Pestoides F]
gi|148872384|gb|ABR14873.1| putative DNA methylase [Yersinia pestis CA88-4125]
gi|165911828|gb|EDR30476.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
gi|165911881|gb|EDR30527.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
gi|165912629|gb|EDR31259.1| DNA methylase [Yersinia pestis biovar Orientalis str. IP275]
gi|165919566|gb|EDR36899.1| DNA methylase [Yersinia pestis biovar Orientalis str. F1991016]
gi|165988907|gb|EDR41208.1| DNA methylase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204444|gb|EDR48924.1| DNA methylase [Yersinia pestis biovar Antiqua str. B42003004]
gi|166957108|gb|EDR55129.1| DNA methylase [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167048340|gb|EDR59748.1| DNA methylase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|229678098|gb|EEO74204.1| putative DNA methylase [Yersinia pestis Nepal516]
gi|229686598|gb|EEO78680.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229693367|gb|EEO83417.1| putative DNA methylase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229700068|gb|EEO88108.1| putative DNA methylase [Yersinia pestis Pestoides A]
gi|262363958|gb|ACY60677.1| putative DNA methylase [Yersinia pestis D106004]
gi|262364118|gb|ACY64454.1| putative DNA methylase [Yersinia pestis D182038]
gi|270334933|gb|EFA45711.1| DNA (cytosine-5-)-methyltransferase [Yersinia pestis KIM D27]
gi|294352535|gb|ADE66591.1| putative DNA methylase [Yersinia pestis Z176003]
gi|317374553|gb|ADV16728.1| adenine-specific methyltransferase [Yersinia pestis]
gi|320017613|gb|ADW01183.1| putative DNA methylase [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 225
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 41/252 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+GN + ++ P +VD I DPPY + D + + +
Sbjct: 3 RFIQGNCVHIMSGFPDNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACHEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + N+ + G
Sbjct: 105 AAYVGYRHECAYILAKGRPPLP-------QNPLNDVIAW----------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T PG I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGN 273
+R+A+V+
Sbjct: 202 QQRLAAVRRAMQ 213
>gi|227498650|ref|ZP_03928794.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904106|gb|EEH90024.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 319
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 66/319 (20%), Positives = 104/319 (32%), Gaps = 85/319 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP +SV PPY + + + + E
Sbjct: 7 DTIINRDALYALRELPEESVHCCVTSPPYYALRDY-----------GLDMQIGREDTPEQ 55
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG----------SYHNI------------------- 111
Y RRVL+ +GTLW+ YH
Sbjct: 56 YIDRLTEVFRELRRVLRSDGTLWLNIADTYCGTGNKGYHADPKNPKGRNGQQIARNNRVS 115
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ +DI+W+K NPMP R +E + + S K
Sbjct: 116 GCKQKDLIGIPWLLAFALRADGWYLRSDIIWQKENPMPESVKDRPTRCYEHIFLLTKSKK 175
Query: 161 AK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------ 197
T + G R R+
Sbjct: 176 YFYDAAAIAEPLAPTTAARYRTGRSAGQKYADEIPGQGKVQGLNRARSGSYYDEALMPTM 235
Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ H P L + + G ++LDPFFGSGT+GA A++L R
Sbjct: 236 RNRRDVWLINTVPYKGGHFAAFPPKLAETCIKAGCPKGGVVLDPFFGSGTTGAAARQLDR 295
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IGIE+ +Y +A RI
Sbjct: 296 HYIGIEINAEYCALARARI 314
>gi|317178343|dbj|BAJ56131.1| adenine-specific DNA methylase [Helicobacter pylori F30]
Length = 750
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 55/280 (19%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+IK + L L ++++ I+ DPP+N + DKF
Sbjct: 377 TLIKSENYQALNSLKNRYKETINCIYIDPPFNTGSDFAYI--------------DKFQD- 421
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW---ILNDIVWRKSN 135
+ + L L P G+ ++ +N +G ML N F N+I+W SN
Sbjct: 422 STWLSLMHNRLELAYDFLSPQGSFYLHLD-NNANYLGRMLLNDIFGKENFRNEIIWYYSN 480
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-------ALKAANEDVQMR------- 181
M N G F ET++ S S K Y + + + MR
Sbjct: 481 KMAN-SGNSFAKNTETILNYSKSEKYIFYRQKEPRSEPVLLSKREGRDGKNMRARDENGK 539
Query: 182 --------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
D I + +ER++N + TQKPE LL RI+ +S+ II
Sbjct: 540 VIYELSHERYVDTLWDISIIGSTSTERVKNNENL----TQKPEKLLERIIQASSDENSII 595
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD F GSGT+ AVA KL+R +IGIEM + + + R+
Sbjct: 596 LDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKK 635
>gi|296142048|gb|ADG95998.1| N6-adenine methyltransferase [Helicobacter pylori]
Length = 214
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 95/227 (41%), Gaps = 23/227 (10%)
Query: 22 KIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
+I ++ +++ VD I DPPYN+ + + + WDK
Sbjct: 3 QIYHADAFEIIKDFYQQNLKVDAIITDPPYNISVKNHFSTLKSAKRQGIDFGEWDKNF-- 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
W+ ++ PNG + + SY I I L+ F + + I W KSNPMP
Sbjct: 61 -----RLLEWIARYAPLVNPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKSNPMP 115
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
RR+ E +WA + K NE P+ SG ER++
Sbjct: 116 RNLNRRYVQDTEFALWAVKKKARWVF------NKPKNEKYLRPLILKSPVVSGLERVK-- 167
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L
Sbjct: 168 -----HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLN 209
>gi|317179582|dbj|BAJ57370.1| putative type III restriction enzyme M protein [Helicobacter pylori
F30]
Length = 569
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 68/352 (19%), Positives = 118/352 (33%), Gaps = 69/352 (19%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 165 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 210
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
++ F + L R L +G++++ Y+ + ++ + ++I+WR
Sbjct: 211 HSSWLVFMKNRLEVAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFRSEIIWRMGF 270
Query: 136 -PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------------------- 174
+++ H+T+++ S S +
Sbjct: 271 LSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQE 330
Query: 175 -------------NEDVQMRSDWLIPICSGS--------------ERLRNKDGEKLHPTQ 207
+ D E + D Q
Sbjct: 331 KVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDEN--FKGQ 388
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KPE+L+ RIL ST D++LD F GSGT+ AVA K++R +IGIE I +R+
Sbjct: 389 KPESLIQRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKK 448
Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
V ++ + + L E L QIL + + D
Sbjct: 449 VIEGEQGGISKKCDFKGGGSFVYAELKEVNLEVKKQILNAKSKSECLKIFND 500
>gi|327198073|ref|YP_004306440.1| gp28 [Burkholderia phage KL3]
gi|310657207|gb|ADP02321.1| gp28 [Burkholderia phage KL3]
Length = 258
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 32/263 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ---LNGQLYRPDHSLVDA---- 67
I +++ + +++++ LP +SVDL+F DPPY L+ + P +++
Sbjct: 13 DITPMLNQLHRVDALALARTLPDQSVDLVFTDPPYASGGLHLSARTRAPSQKYINSDTKA 72
Query: 68 -VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR +KP L + + + ++Q +
Sbjct: 73 VYTDFEGDNMDQRAWAFWCHAWLTECRRAMKPGALLVCFIDWRQLATLTDVVQAAGLTLR 132
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS SD +
Sbjct: 133 GIAVWDKTPGRTRPRRGGFAQQAEFIVWASR-------------------GPMNESDVYL 173
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
P + RL K H T+KP L ++ G ++ D F GSGT A++
Sbjct: 174 PGVFPT-RLALP---KQHVTEKPIELARDVVRLVPD-GGVVCDLFAGSGTFLVAAREAGL 228
Query: 247 SFIGIEMKQDYIDIATKRIASVQ 269
++G E Q Y IA+ R+A+V
Sbjct: 229 QWVGCETSQAYHAIASTRLAAVN 251
>gi|326783121|ref|YP_004323518.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
gi|310005539|gb|ADO99927.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
Length = 266
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 46/263 (17%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
G+ + +++++P +SVD I DPPY + WD F
Sbjct: 11 LGDCLELMKEIPDESVDFICCDPPYGT----------------TSIKWD------EILDF 48
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
W R++KP G + + GS F + L ++ I + P R
Sbjct: 49 NLMW-EQYGRIIKPKGMMALFGS--QPFSAQLICSKLKWFKYELIWNKNKCGSPGLAKYR 105
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD--WLIPICSGSERLRNKDGE- 201
HE ++ + +P + G + ++ + +
Sbjct: 106 PMKTHENILLFAKNPGGTYNPIMEKGEPFKRQSKNPEGYVSKRNDHGYGLKPVKGFENKG 165
Query: 202 ------------------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
++HPTQKP +L ++ + + GD +LD GSG++G A K
Sbjct: 166 TRYPKSILNISRDFSAQQQVHPTQKPVPVLEWLITTFSNEGDTVLDNCMGSGSTGVAAVK 225
Query: 244 LRRSFIGIEMKQDYIDIATKRIA 266
L R FIGI+ + Y+ I+ +RI
Sbjct: 226 LNRKFIGIDTDEKYVTISRERIE 248
>gi|299134373|ref|ZP_07027566.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
gi|298591120|gb|EFI51322.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
Length = 765
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 75/455 (16%), Positives = 143/455 (31%), Gaps = 112/455 (24%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK----------SVDLIFADPPYNL 51
+Q++ + + W +K+I G++ +L L + LI+ DPP+++
Sbjct: 80 AQQDLFLTDSRGRQLQGWTNKLIWGDNKLILSSLKNGPLREEIERQGGLKLIYIDPPFDV 139
Query: 52 QLNGQL----------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+ + +P+ A D+W + S ++ + L+ R +L +G+
Sbjct: 140 GADFSMPVEIGDDTFTKKPNILEEIAYRDTWGRGSD--SFISMVYERLILMRDLLAGDGS 197
Query: 102 LWV-----------------IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
++V GS H++ I + + S +
Sbjct: 198 IYVHTGPNVNHLLRSALDEVFGSSHHLNEIIWRRAFAHNDSGRCGIIHDSILFYSKGDTW 257
Query: 145 FQN----------------------------------AHE---TLIWASPSPKAKGYTFN 167
N H L++
Sbjct: 258 IWNEVLQKPSPDYIEQFFDQYDPVRGERYNRLPLDAPRHGDGGNLVYEWKGAWPAPGRTW 317
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDG--------------EKLHP-------- 205
+ + G RL++ + K+H
Sbjct: 318 AYKREHMERFDREGRIHYPKKEGGKPRLKDFESDYKGMVLQDIWTDINKIHNQSVELLGY 377
Query: 206 -TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
TQKPEALL R++ +S+ GD++ D F GSGT+ AVA+KL R +I ++ + + KR
Sbjct: 378 ATQKPEALLDRVIRASSNRGDLVADFFCGSGTTAAVAEKLGRKWIASDLGKFAVHTTRKR 437
Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
+ VQ E R + + + L Q L
Sbjct: 438 MIGVQRGLKAE---GKDYRAFEILNLGKYERQHYVGVNPNLREEQRQKQLEEKETAFL-- 492
Query: 325 GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH 359
+ +R +E +G+ ++ +K G L
Sbjct: 493 -DLILRAYR-------AERTDGFASFHGKKAGRLV 519
>gi|290957416|ref|YP_003488598.1| restriction-modification system methyltransferase [Streptomyces
scabiei 87.22]
gi|260646942|emb|CBG70041.1| putative restriction-modification system methyltransferase
[Streptomyces scabiei 87.22]
Length = 592
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 63/359 (17%), Positives = 116/359 (32%), Gaps = 111/359 (30%)
Query: 21 DKIIKGNSISVLE--KLPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDSW 72
+K+I G+++ +L +P++SVDL++ DPP+N + + D S ++A D+W
Sbjct: 59 NKLIYGDNLEILRGNLIPSQSVDLVYLDPPFNSNRSYNILFKDKSGEESPAQIEAFDDTW 118
Query: 73 DKFSSFE--------------------------------AYDAFTRAWLLACRRVLKPNG 100
+ E AY A L+ RVLK G
Sbjct: 119 NWSHETEALYLELLEGDHPLAIKDALEAMRRLLGENDVLAYLTMMTARLIELHRVLKSTG 178
Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+L++ + +L + + R RRF H+ ++ +
Sbjct: 179 SLYLHCDPTASHYLKIVLDAIFGPEAFLSEIIWKRTSAHNRVRRFGPVHDVILHYAKGSS 238
Query: 161 AKG-------------------------------YTFNYDALKAANEDVQMRSDWLIPIC 189
T N + + + +
Sbjct: 239 PTWNPQYVPYDQDYIDRDYRRIEETTGRRYRISDMTANRPGSRHEWKGMPPPGNRFWAYS 298
Query: 190 SGSERLRNKDGEKLHPT-----------QKPEALLS------------------------ 214
S +G+ ++ T + P L+
Sbjct: 299 LESMERLEAEGKIVYSTRGYPQVKRYLDEMPGQLVQDVWTDIAPINNRAAEKLGYPTQKP 358
Query: 215 -----RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
RI+ +S+ GD++LDPF G GT+ A++L R +IGI++ ID+ R+
Sbjct: 359 LALLERIIATSSNEGDVVLDPFCGCGTTIDAAQRLGRRWIGIDITTLAIDLIDARLRHT 417
>gi|308185151|ref|YP_003929284.1| adenine-specific DNA methylase [Helicobacter pylori SJM180]
gi|308061071|gb|ADO02967.1| adenine-specific DNA methylase [Helicobacter pylori SJM180]
Length = 754
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 77/287 (26%), Positives = 114/287 (39%), Gaps = 55/287 (19%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
S E +IK + L L +++D I+ DPP+N +
Sbjct: 374 SENEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPFNTGSDFAYI------------- 420
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW---ILND 128
DKF + + L L P G+ ++ +N +G ML N F N+
Sbjct: 421 -DKFQD-STWLSLMHNRLELAYDFLSPQGSFYLHLD-NNANYLGRMLLNDIFGKENFRNE 477
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-------ALKAANEDVQMR 181
I+W SN M N G F ET++ S S K Y + + + MR
Sbjct: 478 IIWYYSNKMAN-SGNSFAKNTETILNYSKSEKYIFYRQKEPRSEPVLLSKREGRDGKNMR 536
Query: 182 ---------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
D I + +ER++N + TQKPE LL RI+ +S
Sbjct: 537 ARDENGKVIYELSHERYVDTLWDIPIIGSTSTERVKNNENL----TQKPEKLLERIIQAS 592
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ IILD F GS T+ AVA KL+R +IGIEM + + + R+
Sbjct: 593 SDENSIILDFFAGSRTTCAVAHKLKRKYIGIEMGEHFDSVILPRLKK 639
>gi|218960436|ref|YP_001740211.1| DNA modification methylase [Candidatus Cloacamonas acidaminovorans]
gi|167729093|emb|CAO80004.1| DNA modification methylase [Candidatus Cloacamonas acidaminovorans]
Length = 275
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 59/287 (20%), Positives = 106/287 (36%), Gaps = 49/287 (17%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + ++ G+++ +L+ + +S+DLI PPY
Sbjct: 1 MNNNEYELYLGDALEILQTIEKESIDLIVTSPPYADSRTNTYG----------------G 44
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLW------VIGSYHNIFRIGTMLQNLNFWILN-- 127
+ Y+ + R+LKP GT V+ + + I +L L
Sbjct: 45 IKPDEYNEWFLPITQELLRILKPTGTFILNIKEKVVNGERHTYVIELILNMRKQGWLWTE 104
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ +W K N P RF++A E L+ + + K Y + ++ +
Sbjct: 105 EFIWHKKNCYPGKWPNRFRDAWERLLQFNKNKFFKMYQEEVMIPIGDWAEKRLSNLSHTD 164
Query: 188 -----------------ICSGSER--------LRNKDGEKLHPTQKPEALLSRILVSSTK 222
G ++ L + G K H P AL + T+
Sbjct: 165 KIRDTSKVGSGFGKNVSNWVGKDKVYPTNVLHLATECGNKNHSATFPYALPEWFIKLFTR 224
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
PGD++LDPF GSGT+ A + R IGI++ +Y ++ +I + Q
Sbjct: 225 PGDVVLDPFMGSGTAVFAALNMGRKAIGIDINPEYYNLVLGKIQNQQ 271
>gi|110667919|ref|YP_657730.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
16790]
gi|109625666|emb|CAJ52098.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
16790]
Length = 284
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 25/272 (9%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS-SFEAY 81
I +G+ + L +L ++ L F PPY +N + + V TD W++ S++ Y
Sbjct: 11 IHRGDCLDGLRELAEDAITLGFTSPPYFNAVNYEEHVE---KVHGNTDHWEREEMSYDDY 67
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWRK 133
F RV +P G V S + F + ++++ + DI+W K
Sbjct: 68 QDFLIKRFEEVFRVTRPGGHTIVNISPVHWEDERVALPFHLVGWMEDIGWTFKEDIIWEK 127
Query: 134 SNPMPNFRGRRFQNAHETLIW------ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
G QN + + + + N + + + + + +
Sbjct: 128 PVAKDRRSGVLLQNPYPGYYYPSVVAEYVLVFQKEADDENKNNIYWNRTEEEKTKNEISL 187
Query: 188 ICSGSERLRN-------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
E+ +N GE HP P L R++ + D ++D F GSG +
Sbjct: 188 DDYQGEKSKNVWKIRQVAPGENEHPAPFPRELAERVIQFYSYQDDTVMDIFAGSGQTLLA 247
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
A+ L R FIG E + +Y++ A R+
Sbjct: 248 AQDLDREFIGFETQHEYVEYAKNRVIDESSQM 279
>gi|251779709|ref|ZP_04822629.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084024|gb|EES49914.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 260
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 57/279 (20%), Positives = 100/279 (35%), Gaps = 45/279 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I G+ + V+ + KS+D+I D PY WD + E
Sbjct: 4 LNNIYLGDCLEVMADIKDKSIDMILCDLPYGT----------------TRCKWDSVINLE 47
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
RV+K NG + + +G+ + + + +W K+ +
Sbjct: 48 KLWEHYC-------RVIKDNGAIVLFAQTPFDKVLGS---SNLEMLRYEWIWEKTQATGH 97
Query: 140 FRGRRFQ-NAHETLIWASP------------------SPKAKGYTFNYDALKAANEDVQM 180
++ AHE ++ K N + ++++
Sbjct: 98 LNAKKMPMKAHENILVFYKNLPVYNPQKTVGHAPVNTYTKYIATQNNSELYGELSKEISG 157
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ S +K E LHPTQKP LL ++ + T G+ +LD GSG++
Sbjct: 158 GGNTERYPRSVQIFSSDKQKEHLHPTQKPVKLLEYLIKTYTNKGETVLDNCIGSGSTAVA 217
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
A + R+FIGIE + Y +IA R+ + L
Sbjct: 218 AININRNFIGIEKEFKYYEIALNRLKVKATVNTQYLNED 256
>gi|260751833|ref|YP_003232554.1| putative DNA modification methylase [Escherichia coli O26:H11 str.
11368]
gi|462649|sp|Q04845|MTC1_CITFR RecName: Full=Modification methylase CfrBI; Short=M.CfrBI; AltName:
Full=N(4)- cytosine-specific methyltransferase CfrBI
gi|40477|emb|CAA41012.1| nicotinamide methyltransferase [Citrobacter freundii]
gi|257757380|dbj|BAI28879.1| putative DNA modification methylase [Escherichia coli O26:H11 str.
11368]
Length = 376
Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 97/266 (36%), Gaps = 41/266 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ +++GN L+KLP +SV+L+F PPY + ++ +++
Sbjct: 113 NMLLQGNCAETLKKLPDESVNLVFTSPPYY----------------NAKPEYSEYHTYDE 156
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------------IGTMLQNLNFWI 125
Y + R+ + C RVL + S I R + + +
Sbjct: 157 YLSLLRSVIKECHRVLSEGRFFVINVSPVLIRRASRNEASKRIAVPFDLHRLFIEEGYEF 216
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
++DI W K GR + A + Y Y D +R+
Sbjct: 217 IDDIHWVKPEGAGWALGRGRRFAADRNPLQYKPVPVTEYILVYRKKTDKLIDWNIRNHHS 276
Query: 186 IPICSGSERLRNKDG----------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
S+ + + + HP P L R++ + D+ILDPF GSG
Sbjct: 277 KEDVFDSKIGDDYEKTNLWKINPSRNRKHPATFPYGLAERVIKYYSFKNDVILDPFAGSG 336
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIA 261
T+ A L R F+ E+ + YID+
Sbjct: 337 TTAKAAIDLGRRFVMCEISKQYIDLI 362
>gi|326783389|ref|YP_004323665.1| DNA adenine methylase [Prochlorococcus phage Syn33]
gi|310005336|gb|ADO99725.1| DNA adenine methylase [Prochlorococcus phage Syn33]
Length = 258
Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 98/265 (36%), Gaps = 48/265 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +G+ +S++ + KS+DLI DPPY WD+ F+
Sbjct: 9 LHQGDCLSLMNDIQDKSIDLICCDPPYGT----------------TNIKWDEVLDFDTM- 51
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW-RKSNPMPNFR 141
R+LKP G + + GS ++ + W ++VW + P
Sbjct: 52 ------WAQYDRILKPKGVIVLFGSQ---PFSAQLICSKLDWFRYELVWNKNKCGSPGLA 102
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG-SERLRNKDG 200
+R HE ++ A + G + R +
Sbjct: 103 KKRPMKTHENILIFYKEAGGTYNPQMEVGEPYARKSKSDEGYVGKKNDHGYGMKPRKEFE 162
Query: 201 EK--------------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
K +HPTQKP +L ++ + + GD +LD GSG++G
Sbjct: 163 NKGTRYPKSILNISRDFSAQQQVHPTQKPVPMLEWLIKTYSNEGDTVLDNCMGSGSTGVA 222
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
A L R FIG+E ++Y +I+ +RI
Sbjct: 223 AINLNRKFIGMETNEEYFNISAERI 247
>gi|254183949|ref|ZP_04890540.1| DNA methylase [Burkholderia pseudomallei 1655]
gi|184214481|gb|EDU11524.1| DNA methylase [Burkholderia pseudomallei 1655]
Length = 267
Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 60/265 (22%), Positives = 97/265 (36%), Gaps = 32/265 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 24 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKT 83
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 84 VYTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 143
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 144 GIAVWDKTPGRTRPRRGGFAQQAEFVVWASRGA--------------------MRDCEVY 183
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A A++
Sbjct: 184 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGL 239
Query: 247 SFIGIEMKQDYIDIATKRIASVQPL 271
+IG E Y++IA R+
Sbjct: 240 HWIGCESNVYYVNIAHSRLRKEAAH 264
>gi|189500189|ref|YP_001959659.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
phaeobacteroides BS1]
gi|189495630|gb|ACE04178.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
BS1]
Length = 293
Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 63/311 (20%), Positives = 106/311 (34%), Gaps = 56/311 (18%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
E + + G+S L+K+P SVDLI PPY Q
Sbjct: 1 MEIRTDLYLGDSQEELKKIPDNSVDLIVTSPPYADQRKKTYG----------------GI 44
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIG---------SYHNIFRIGTMLQNLNFWILN 127
+ Y ++ RVLKP GT + S + + I M + +
Sbjct: 45 HPDHYVSWFLPIAEQLMRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMRRQQGWLWTE 104
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE----------- 176
+ +W K N P RF+++ E LI + +K + N +A+
Sbjct: 105 EFIWHKKNCYPGKWPNRFRDSWERLIQFNK---SKQFYMNQEAVMVPMGEWSKTRLKNLS 161
Query: 177 ---------------DVQMRSDWLIPICSGSE--RLRNKDGEKLHPTQKPEALLSRILVS 219
+ + + L + K H PE L +
Sbjct: 162 ETDKVRDESKVGSGFGKNISNWLDRKKAYPTNVLHLATECNNKKHSAAFPEGLPEWFIRL 221
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
TK GD +LDPF GSGT+ VA +++R IG+++ +Y + + + +
Sbjct: 222 FTKEGDTVLDPFMGSGTTNIVASRMKRHSIGVDILPEYYSMVCDELKPQELYLLEQTKQY 281
Query: 280 TGKRTEPRVAF 290
+ R+
Sbjct: 282 ETDTIKRRIEV 292
>gi|323974517|gb|EGB69644.1| DNA methylase [Escherichia coli TW10509]
Length = 227
Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAAFQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|324016383|gb|EGB85602.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
Length = 227
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFIQGDCVRVMATFPGNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|127489|sp|P14230|MTSM_SERMA RecName: Full=Modification methylase SmaI; Short=M.SmaI; AltName:
Full=N-4 cytosine-specific methyltransferase SmaI
gi|47265|emb|CAA34479.1| unnamed protein product [Serratia marcescens]
gi|152853|gb|AAA26570.1| methylase [Serratia marcescens]
Length = 292
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 55/281 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++ ++ L ++ D + PPY + + Y
Sbjct: 26 KIIVGDAREAVQGLDSEIFDCVVTSPPYWGLRDY-----------GNGGQIGAEDNINDY 74
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNI----------------------------- 111
RR LK +GTLW+ IG +
Sbjct: 75 IKDLVDLFRDVRRTLKDDGTLWLNIGDSYTSGGRTWRDKDDKNKGRAMSYRPPTPEGLKP 134
Query: 112 -------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+R+ LQN +++ DI+W K N P R +HE + S K Y
Sbjct: 135 KDLIGVPWRLAFALQNDGWYLRTDIIWNKPNCQPESVRDRPTRSHEYIFLLSKGKK---Y 191
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
++++++K D +M + + + + H P A+ +++ ++PG
Sbjct: 192 YYDWESIKEPASDPKMDKKNRRTVWN----INTEPYPGSHFAVFPRAMARLCVLAGSRPG 247
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+LDPFFGSGT+G V ++L R +GIE+ ++Y +A +RI
Sbjct: 248 GKVLDPFFGSGTTGVVCQELDRECVGIELNEEYASLAKERI 288
>gi|327474985|gb|AEA77090.1| M.StyI [Salmonella enterica subsp. enterica serovar Typhi]
Length = 376
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 97/266 (36%), Gaps = 41/266 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ +++GN L+KLP +SV+L+F PPY + ++ +++
Sbjct: 113 NMLLQGNCAETLKKLPDESVNLVFTSPPYY----------------NAKPEYSEYHTYDE 156
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------------IGTMLQNLNFWI 125
Y + R+ + C RVL + S I R + + +
Sbjct: 157 YLSLLRSVIKECHRVLSEGRFFVINVSPVLIRRASRNEASKRIAVPFDLHRLFIEEGYEF 216
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
++DI W K GR + A + Y Y D +R+
Sbjct: 217 IDDIHWVKPEGAGWALGRGRRFAADRNPLQYKPVPVTEYILVYRKKTDKLIDWNIRNHHS 276
Query: 186 IPICSGSERLRNKDG----------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
S+ + + + HP P L R++ + D+ILDPF GSG
Sbjct: 277 KEDVFDSKIGDDYEKTNLWKINPSRNRKHPATFPYGLAERVIKYYSFKNDVILDPFAGSG 336
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIA 261
T+ A L R F+ E+ + YID+
Sbjct: 337 TTAKAAIDLGRRFVMCEISKQYIDLI 362
>gi|320159714|ref|YP_004172938.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
thermophila UNI-1]
gi|319993567|dbj|BAJ62338.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
thermophila UNI-1]
Length = 304
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 18/280 (6%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I + + +L +V L PPY ++ + D S + + +
Sbjct: 1 MNIIYTHSC-ERMPELEEGAVSLTVTSPPYWNAIDYDRHAEDDSQYYRTRQYANGYQDYH 59
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVW 131
Y + RV KP G V+ Y F + + + + DI+W
Sbjct: 60 EYLDWLVRIFREVYRVTKPGGFCAVVIGTVLLEGKLYPVPFDMTSQFVQIGWEFYQDIIW 119
Query: 132 RKSNPMPNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD--- 183
K G + ++ K Y+ ++ S
Sbjct: 120 HKCTAGVKRAGVSIQKPYPGYFYPNIMNEYILIFRKPGPRIYENRSQEEKEQAQYSIDRL 179
Query: 184 WLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + I + + + + HP PE + R++ + PGD+ILDPF GSG + VA+
Sbjct: 180 FTMDIANNIWHIAPVPPKIIPHPAPFPEEIPFRLIQLYSYPGDLILDPFVGSGQTLKVAR 239
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
L R ++G E+ + Y+ +A +RI L +L + K
Sbjct: 240 HLGRPYVGYEVIEKYVQLAKQRIPEPLDLRQEQLIAVFDK 279
>gi|206889804|ref|YP_002249010.1| modification methylase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741742|gb|ACI20799.1| modification methylase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 684
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/383 (17%), Positives = 119/383 (31%), Gaps = 86/383 (22%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEK--------LPA---KSVDLIFADPPY 49
+ + +E+ EW++ I+ G+++ L+ + V LI+ DPP+
Sbjct: 63 LQVEKVFNSDEHPAGDKEWRNMIVFGDNLQFLKTVYENKDPLIKDRVKGKVKLIYIDPPF 122
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
R + + F R L+ R +L +G+++V YH
Sbjct: 123 GTGDEYDANRGQKAYSARAKG--------AEFVEFLRRRLILAREILADDGSIFVRQDYH 174
Query: 110 NIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP----SPKAKGY 164
+ ++ + + F R+ A++ L W S K
Sbjct: 175 FGHYVKVIMDEVFGKENFLNEIIVARITKKGFGANRYPTANDYLFWYSKTSDYFFKPYRK 234
Query: 165 TFNYDALKAANEDV----------------QMRSDWLIPICSGSERL------------- 195
N K + D ER+
Sbjct: 235 PLNSKKEKWHSMDSMSGGRKTGEPRFILGEMRYPPKGRVWTFSQERIFEMEKEGLIKLNS 294
Query: 196 -----------------------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
+PT+ E LL RI+ S+T+P D++LD F
Sbjct: 295 KGRPIYKVLTQEGEPLDSNWTDIPGYSFTTDYPTENSEQLLERIIKSTTQPNDLVLDFFA 354
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
GSGT+ AVA+KL R +I ++ + KRI ++Q ++E +
Sbjct: 355 GSGTTAAVAEKLGRRWIVCDIGKLAFYTMQKRILTIQDSKDLENPKKKYGKKA------- 407
Query: 293 LVERGLIQPGQILTNAQGNISAT 315
R I L + +
Sbjct: 408 ---RSFITVNTGLYDLKKVFELK 427
>gi|297242706|ref|ZP_06926644.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
vaginalis AMD]
gi|296888917|gb|EFH27651.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
vaginalis AMD]
Length = 411
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 92/267 (34%), Gaps = 35/267 (13%)
Query: 20 KDKIIKGNS--ISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +I G++ + + L V+L+ DPPYN+ G + + D
Sbjct: 167 KHHVICGDATKLETYKTLLENTKVNLVVTDPPYNVNYEGAAGKIKN----------DNME 216
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + Y F + + + + +++V + Q+ F++ +W+K +
Sbjct: 217 NDKFY-QFLFNSFVNMEQAMADDASIYVFHADTEGLNFRKAFQDAGFYLSGCCIWKKPSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + Y + + S W
Sbjct: 276 VLGRSP------------YQWQHEPCLYGWKKKGKHNWYAGRKETSVWEFE--------- 314
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP ALL+ + +S+ ++LDPF GSG++ ++ R IE+ +
Sbjct: 315 KSKKNADHPTMKPIALLAYPIKNSSMTNSLVLDPFAGSGSTLIACEQTGRICYAIELDEK 374
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
Y D+ KR + GK
Sbjct: 375 YCDVIVKRYIEQVGNDKSVKVLRGGKE 401
>gi|307352466|ref|YP_003893517.1| DNA methylase N-4/N-6 domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307155699|gb|ADN35079.1| DNA methylase N-4/N-6 domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 279
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 104/295 (35%), Gaps = 56/295 (18%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N+NS + + I + + ++K+P +D+I PPYN+ + + +
Sbjct: 5 NINENSEYAELNVIYNVDCLKGMKKIPDNFIDIIVTSPPYNIGIKYNTHNDNQ------- 57
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-----------WVIGSYHNIFRIGTML 118
++Y + +R+LK +G++ W+ N FR L
Sbjct: 58 -------PLDSYLNWMNLISKEFKRILKDDGSIFLNIGGKPSDLWIPFDVLNEFRSDFKL 110
Query: 119 QNLNFWILNDIV--------------WRKSNPMPNFRGRRFQNAHETLIWASPSPK---- 160
QN+ WI + + + P R HE + + +
Sbjct: 111 QNIIHWIKSIAIEKKDVGNYDCLRKDMAVGHYKPVNSKRFLSQCHEHIFHLTKNCDINLD 170
Query: 161 ------AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
N K+AN D + R + + HPT P L
Sbjct: 171 KLSIGVKYQDKSNIGRWKSANSDKRERGNVWFIP------YETILSSRPHPTSFPVRLPE 224
Query: 215 RILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ +++DPF G G++ KKL +++G E+ ++Y A +R+A
Sbjct: 225 MCIKLHGFDEKTVVMDPFMGIGSTALACKKLETNYVGFEIDKEYYKFALERLAKY 279
>gi|300819994|ref|ZP_07100174.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
gi|300527443|gb|EFK48505.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
gi|321271401|gb|ADW79491.1| putative DNA methyltransferase [Escherichia coli]
gi|323133080|gb|ADX20508.1| putative methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323959159|gb|EGB54825.1| DNA methylase [Escherichia coli H489]
Length = 227
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ TD W
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ + T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIENFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|58000334|ref|YP_190175.1| putative methylase [Escherichia coli]
gi|307313336|ref|ZP_07592959.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
gi|57903234|gb|AAW58864.1| DNA methylase [Escherichia coli]
gi|306906758|gb|EFN37268.1| DNA methylase N-4/N-6 domain protein [Escherichia coli W]
gi|315063813|gb|ADT78139.1| putative methylase [Escherichia coli W]
gi|323380952|gb|ADX53219.1| DNA methylase N-4/N-6 domain protein [Escherichia coli KO11]
Length = 227
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|321271502|gb|ADW79591.1| putative DNA methyltransferase [Escherichia coli]
gi|332346561|gb|AEE59893.1| putative DNA methyltransferase [Escherichia coli UMNK88]
Length = 227
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|298253810|ref|ZP_06977399.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
vaginalis 5-1]
gi|297532146|gb|EFH71119.1| DNA methylase N-4/N-6 domain-containing protein [Gardnerella
vaginalis 5-1]
Length = 422
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/267 (17%), Positives = 94/267 (35%), Gaps = 35/267 (13%)
Query: 20 KDKIIKGNS--ISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +II G++ + + L V+L+ DPPYN+ G + + D
Sbjct: 178 KHRIICGDATKLETYKTLLENTKVNLVVTDPPYNVNYEGAAGKIKN----------DNME 227
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + Y F + + + + +++V + Q+ F++ +W+K +
Sbjct: 228 NDKFY-QFLFNSFVNMEQAMADDASIYVFHADTEGLNFRKAFQDAGFYLSGCCIWKKPSL 286
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ Y + ++ + + +
Sbjct: 287 VLGRS---------------------PYQWQHEPCLYGWKKKGKHKWYAGRKETSVWEFE 325
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP ALL+ + +S+ ++LDPF GSG++ ++ R IE+ +
Sbjct: 326 KPKKNADHPTMKPIALLAYPIKNSSMTNSLVLDPFAGSGSTLIACEQTGRICYAIELDEK 385
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
Y D+ KR + GK
Sbjct: 386 YCDVIVKRYIEQVGNDKSVKVLRGGKE 412
>gi|295107187|emb|CBL04730.1| DNA modification methylase [Gordonibacter pamelaeae 7-10-1-b]
Length = 283
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/289 (20%), Positives = 103/289 (35%), Gaps = 49/289 (16%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
E+ SI + II+G+ + ++ +P +S+D++ D PY +
Sbjct: 11 EDTRSIEPLLNTIIEGDCLEKMKAIPDESIDMVLCDLPYGT----------------TQN 54
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
WD + + RRV+KP G + + S +F ML + + +
Sbjct: 55 KWDSIINLDI-------LFTEYRRVIKPRGVIALTSS--GLFTAKLMLHAADLYKYKLVW 105
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF----NYDALKAANEDVQMRSDWLI 186
+ ++ +E + S +YD N+ D+
Sbjct: 106 IKSKATNFLNAKKQPLRKYEDICIFYRSQPTYHPQMSQGESYDKGVRKNQLTGSYGDFDP 165
Query: 187 PICSGS----------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ +G HPTQKP L ++ + T PGD++LD GSG+
Sbjct: 166 KHVQSDGSRYPTDIVYFKTAESEGPVYHPTQKPVELGRYLIRTYTDPGDVVLDNACGSGS 225
Query: 237 SGAVAKKLRRSFIGIEMK----------QDYIDIATKRIASVQPLGNIE 275
A R +IGIE DYI++ +R+ + + E
Sbjct: 226 FCVAACLEGRRYIGIEKNEGVARFKNEPIDYIEVCRRRLEEARSRMDEE 274
>gi|229037677|ref|ZP_04189516.1| DNA modification methylase-like protein [Bacillus cereus AH1271]
gi|228727652|gb|EEL78789.1| DNA modification methylase-like protein [Bacillus cereus AH1271]
Length = 227
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/246 (25%), Positives = 96/246 (39%), Gaps = 29/246 (11%)
Query: 32 LEKLPA--KSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+ L + VD I PPYNL + + + + E Y +
Sbjct: 1 MSILRDSGQKVDCIVTSPPYNLGGDFHTMVGGKRVTYGDYISPYKDKLNEEDYQKWQIDV 60
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN-----DIVWRKSNPMPNFRGR 143
L +C VLK +G ++ ++ N GT++ + + ++ N R
Sbjct: 61 LDSCFEVLKDDG--FMFYNHKNRIVKGTVISPFEWIKKSKFNISQVIVMNLKSTANVDKR 118
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
RF HE + + P N + W +
Sbjct: 119 RFFPVHELIFVLTKVP-----------SVKLNNFECLTDVWDMKKVPRK--------ISG 159
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP E L R +VSSTK G+I+LDPF GSGT+ A KL R FIG E+ ++YI IA K
Sbjct: 160 HPATFHEELPRRCIVSSTKEGEIVLDPFMGSGTTAYSALKLNRKFIGFELSEEYISIANK 219
Query: 264 RIASVQ 269
R+ ++
Sbjct: 220 RLQELE 225
>gi|284924688|emb|CBG27883.1| DNA methylase [Escherichia coli]
gi|323158252|gb|EFZ44338.1| DNA methylase family protein [Escherichia coli E128010]
Length = 227
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + R ++ TD W
Sbjct: 3 RFILGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|269104405|ref|ZP_06157101.1| N6 adenine-specific DNA methyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161045|gb|EEZ39542.1| N6 adenine-specific DNA methyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 224
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/251 (21%), Positives = 109/251 (43%), Gaps = 37/251 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + K +++S L+++ +S+DL+ DPPY + G R S ++ W +
Sbjct: 6 NHVYKSDALSWLKEIQDQSIDLVITDPPYESLEKHRAVGTTTRLKQSK--GSSNDWFRIL 63
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ ++ L RVLK N ++ +F + + + + F IVW K
Sbjct: 64 PNDQFEPL----LQEIYRVLKKNSHFYLFCDQETMFIVKPIAEKIGFKFWKPIVWDKCAI 119
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ Y Y+ + + + +D +P +R+
Sbjct: 120 GMGY----------------------HYRSRYEFILFFEKGKRKLNDLSVPDVLEFKRVW 157
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ +PT+KP LL ++ S++P DI++DPFFGSG++ A +L+R +IG ++ +
Sbjct: 158 -----RGYPTEKPVELLKTLIAQSSEPNDIVIDPFFGSGSTLVAASQLQRYYIGCDVSDN 212
Query: 257 YIDIATKRIAS 267
++RI+
Sbjct: 213 AHQHFSQRISE 223
>gi|298252318|ref|ZP_06976120.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
44963]
gi|297545738|gb|EFH79607.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
44963]
Length = 567
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 73/373 (19%), Positives = 127/373 (34%), Gaps = 112/373 (30%)
Query: 20 KDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDH------SLVDAVTDSW 72
++ + G++ +L + + VDLI+ DPP+N N + D + + A D+W
Sbjct: 7 ENTLFYGDNFDILREYFIDECVDLIYLDPPFNSNRNYNVLFKDEHGSDSEAQITAFEDTW 66
Query: 73 ------------------DKF-------------SSFEAYDAFTRAWLLACRRVLKPNGT 101
DK + AY A L+ RVLKP G+
Sbjct: 67 HWTVATEHTYYHILNHSSDKVVEMITALRAFIGTNQMMAYLVMMTARLIELHRVLKPTGS 126
Query: 102 LWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNF---------------RGRR 144
L++ + +L + N+I+W++++ N RG +
Sbjct: 127 LYLHCDPTASHYLKIILDTIFGAQNFRNEIIWKRTSSHGNVTTTYGDVTDTILYYSRGGK 186
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD--------------------- 183
+ + ++ + D + D++
Sbjct: 187 PVWNQVYIPYTQKHIESSFTHVDSDGRRYTTSDLRNPGYRPNLIYDYKGYKPHPNGWAVS 246
Query: 184 -------------WLIPICSGSERLRNK-----------------------DGEKLHPTQ 207
W G RL+ +PTQ
Sbjct: 247 REKMEEYDRQGRLWFPSNKDGRIRLKRYLDESPGHRVQNLWDDIPPISSQAAERLGYPTQ 306
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KP ALL RI+ +S+ PG +ILDPF G GT+ A A+KL R +IGI++ I + R+ +
Sbjct: 307 KPLALLERIIAASSNPGCVILDPFCGCGTAIAAAQKLERKWIGIDVTHLSIALQKYRLEA 366
Query: 268 VQPLGNIELTVLT 280
+ P ++
Sbjct: 367 MFPGIKFKIVGEP 379
>gi|58383244|ref|YP_194814.1| putative methylase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|168758413|ref|ZP_02783420.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
gi|168770710|ref|ZP_02795717.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
gi|187736750|ref|YP_001816488.1| putative methylase [Escherichia coli 1520]
gi|194433597|ref|ZP_03065874.1| DNA methylase family protein [Shigella dysenteriae 1012]
gi|256367716|ref|YP_003108273.1| DNA methylase [Escherichia coli]
gi|291289357|ref|YP_003517689.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
gi|302595375|ref|YP_003829237.1| DNA methylase [Escherichia coli]
gi|302595494|ref|YP_003829112.1| DNA methylase [Escherichia coli]
gi|309797313|ref|ZP_07691707.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
gi|37962723|gb|AAR05670.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|62550783|emb|CAH64706.1| hypothetical protein [uncultured bacterium]
gi|172051332|emb|CAP07674.1| unnamed protein product [Escherichia coli]
gi|189354777|gb|EDU73196.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4401]
gi|189360471|gb|EDU78890.1| DNA methylase family protein [Escherichia coli O157:H7 str. EC4486]
gi|194418189|gb|EDX34281.1| DNA methylase family protein [Shigella dysenteriae 1012]
gi|228480653|gb|ACQ41980.1| DNA methylase [Escherichia coli]
gi|290792318|gb|ADD63643.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
gi|302310135|gb|ADL14006.1| YhdJ [Escherichia coli]
gi|302310263|gb|ADL14131.1| YhdJ [Escherichia coli]
gi|308119060|gb|EFO56322.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
gi|327536645|gb|AEA95477.1| adenine-specific methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin]
Length = 227
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMTRIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|257486160|ref|ZP_05640201.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|331010490|gb|EGH90546.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 69/351 (19%), Positives = 111/351 (31%), Gaps = 118/351 (33%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I+ G+ I V+ LP +SV PPY + V +
Sbjct: 4 LHQILLGDCIDVMRTLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPA 52
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYH------------------------------ 109
+ A RRVL+ +GT+WV
Sbjct: 53 EFIARLVDVFREVRRVLRADGTIWVNMGDSYATGGRGGGGSYMAERGDAAWKGKGSATGW 112
Query: 110 --------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+R+ LQ+ +++ DI+W K NPMP R AHE L
Sbjct: 113 RSAPAGFKHKDLMGMPWRLAFALQDDGWYLRQDIIWHKPNPMPESTRDRCTKAHEYLFLL 172
Query: 156 SPSPKAKGYTFNYDALKA-----------ANEDVQMRSDWLIPICSGSER--------LR 196
S ++ Y ++ DA+K N D Q SD + +G + +
Sbjct: 173 SK---SRRYFYDQDAIKEPVAASSIARLSQNVDDQAGSDRVPGKTNGPMKAVRSRRDSFK 229
Query: 197 NKDGEK-----------------------------------------LHPTQKPEALLSR 215
+D ++ H P L+
Sbjct: 230 REDSKREQAIPGQAFGTHRPDRDDSDYPLDVRNKRSVWSVPTVGYKGAHFATFPPDLIRP 289
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+++S G ++LDPF G+GT+ V+ + R I E+ Y +A RI
Sbjct: 290 CILASAPRGGVVLDPFGGAGTTSLVSMQEGRRSIICELNPGYAALARARID 340
>gi|208435275|ref|YP_002266941.1| putative type III restriction enzyme M protein [Helicobacter pylori
G27]
gi|208433204|gb|ACI28075.1| putative type III restriction enzyme M protein [Helicobacter pylori
G27]
Length = 534
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/314 (19%), Positives = 114/314 (36%), Gaps = 65/314 (20%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 130 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNF--------------N 175
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
++ F + L A R L +G++++ Y+ + ++ + ++I+WR
Sbjct: 176 HSSWLVFMKNRLEAAREFLSDDGSIYINLDYNEVHYCKVLMDEIFKRENFRSEIIWRMGF 235
Query: 136 -PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-------------------- 174
+++ H+T+++ S S +
Sbjct: 236 LSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLPLLTKNEVQNAFKKFSFPQE 295
Query: 175 --NEDVQMRSDWLIPICSGSERLRNKD-----------------------GEKLHPTQKP 209
++ + + E N + ++ QKP
Sbjct: 296 KIDDFLTFINHENRSEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENFKGQKP 355
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E+L+ RIL ST D++LD F GSGT+ AVA K++R +IGIE I +R+ V
Sbjct: 356 ESLIQRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVI 415
Query: 270 PLGNIELTVLTGKR 283
++ G +
Sbjct: 416 EGEQGGISKKCGFK 429
>gi|325979236|ref|YP_004288952.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|325179164|emb|CBZ49208.1| DNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
Length = 424
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 22/273 (8%)
Query: 20 KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S L KL A +DL DPPYN+ G+ D + D
Sbjct: 162 EHRLMCGDSTNPDHLAKLLAGQPIDLYVTDPPYNVAYEGKTKAALTIPNDNLDD------ 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+A+ F + LK G ++ + T LQ + + ++W K +
Sbjct: 216 --QAFQTFLVDAFHNVDQYLKAGGVFYIWHADKERLAFSTALQQVGWLEKQALIWVKDSF 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------WLIP 187
+ + +Q HE ++ S + + ++ ++ +S +
Sbjct: 274 VLG--RQDYQWQHEPCLYGWKSGASHYFVSDFSQSTILESQLETKSKQELIALIKTYQAN 331
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ R+ + HPT KP ALL R + SS++ GD +LD F GSG++ ++L R
Sbjct: 332 QPTSILRVNRPTKNEDHPTMKPIALLERFIRSSSRRGDCVLDTFAGSGSTLLACERLGRK 391
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
+E++ Y++ R I+L
Sbjct: 392 SYSMELEPKYVERILTRFQQETGQVPIKLNKEE 424
>gi|194015332|ref|ZP_03053948.1| DNA methylase [Bacillus pumilus ATCC 7061]
gi|194012736|gb|EDW22302.1| DNA methylase [Bacillus pumilus ATCC 7061]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/277 (20%), Positives = 100/277 (36%), Gaps = 50/277 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I + + + ++ +P +SVDLI D PY + R WDK E
Sbjct: 11 LNRIYQMDCLEGMKLIPDESVDLILCDLPYGT---TDVKR------------WDKIIPIE 55
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+R++K G + + GS ++ + + +W K+
Sbjct: 56 -------KLWEQYKRIIKETGNVVLFGSQ---PFTSYLVNSNPSMFRYEWIWDKTKGANF 105
Query: 140 FRGRRFQNA-HETLIWASPSPKAKGYTFNYDALKAANEDVQMR----SDWLIPICSGSER 194
HE ++ S P + E + + S GS R
Sbjct: 106 LNSNHQPLKVHENILVFSKLPASPNKKGTATYFPQKTEGKEYKVKRSSHKGEIFNGGSLR 165
Query: 195 ------------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
L++KD +HPTQKP + ++ + T DI+LD GSGT
Sbjct: 166 DNFEKVNEGRHPVSIQTFLKDKDN--IHPTQKPVEMCEYLIRTYTDQSDIVLDNCMGSGT 223
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
+ + +R +IG E + +A KR+ VQ +
Sbjct: 224 TAVASIISQRKWIGFETDPTFYQLANKRLEQVQLGDD 260
>gi|253801008|ref|YP_003034009.1| putative methylase [Escherichia coli Vir68]
gi|253721185|gb|ACT33494.1| putative DNA methylase [Escherichia coli Vir68]
Length = 227
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFIQGDCVRVMATFPGNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D G + L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPD-------------------VLGWKYL----GN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHCAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|325297643|ref|YP_004257560.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
salanitronis DSM 18170]
gi|324317196|gb|ADY35087.1| DNA methylase N-4/N-6 domain protein [Bacteroides salanitronis DSM
18170]
Length = 262
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/266 (20%), Positives = 96/266 (36%), Gaps = 38/266 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
DKI + + ++++ +SVD + AD PY + L R + + WD+
Sbjct: 4 DKIYHMDCLEGMKQIADRSVDAVIADLPYGV-----LNRQNGAA------RWDQKIPLA- 51
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
R+ KP+ + + +F +L W N + +
Sbjct: 52 ------PLWEQYLRITKPDSPIILFA--QGMFTAELVLSQPKLWRYNLVWHKDRVSGHLN 103
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLR 196
R HE ++ + N D + + + R+
Sbjct: 104 ANRMPMRQHEDIVVFYRKLPVYHPQMIPCPPEKRNHDRRKTEGFTNRCYGDMKLAPVRIA 163
Query: 197 NKD--------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G HPTQKP AL+ ++ + T GD++LD GSGT+ A
Sbjct: 164 DDKYPTSVVSVPKEHCTGAFYHPTQKPVALIEYLIRTYTDEGDLVLDNCIGSGTTAIAAL 223
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
+ R +IG E+ + Y +IA +RI
Sbjct: 224 RTGRHYIGFEIDKSYCEIAEQRIREE 249
>gi|134095382|ref|YP_001100457.1| putative site-specific DNA-methyltransferase (adenine-specific)
[Herminiimonas arsenicoxydans]
gi|133739285|emb|CAL62334.1| Putative site-specific DNA-methyltransferase (adenine-specific)
[Herminiimonas arsenicoxydans]
Length = 674
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/281 (21%), Positives = 107/281 (38%), Gaps = 39/281 (13%)
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKAKGYTFNYDA 170
F G +L++ +V+ P G R + + A + G
Sbjct: 250 FYDGPILRSDGMGARPYLVYEYKGFTPGPSGWRMKKTSLEVIDQAGDLGWSTGGKPFRKL 309
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
++ + S W S+ + +PTQKP LL RI+ ++T PGD++ D
Sbjct: 310 RPEKDKGRPIGSFWNDISLINSQ----AEERIGYPTQKPIKLLERIITATTDPGDLVFDG 365
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG--------- 281
F GSGT+ A KL R FIG ++ I I+ KR+ ++ +L +
Sbjct: 366 FVGSGTTLVAAAKLGRRFIGSDINLAAIQISAKRLQTLLDQLGQQLDLDESIEEFVDDDE 425
Query: 282 ----------KRTEPRVAFNLL------VERGLIQPGQILT---NAQGNISATV---CAD 319
KR R F + + R +Q ++L Q +TV D
Sbjct: 426 DDEARVVSNLKRATQRCGFEVYNVNHYDIFRNPVQAKELLIEVLEVQKLEFSTVFDGEKD 485
Query: 320 GTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
G +I ++ ++R+ + +E G+++ +E+
Sbjct: 486 GRMI---KIMPVNRIATRADLNELIAGFDYKAWERKQNEAP 523
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 21/163 (12%)
Query: 19 WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY----------RPDHSLV 65
W++K+ G+++ V+ L V LI+ DPP++ + + + +
Sbjct: 66 WRNKLFWGDNLQVMSHLIKKFRGQVKLIYIDPPFDSKADYKKSVRLRGTAAESDQNCFEE 125
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL---- 121
TD W S + Y F L+ R +L G+++V +H I ML +
Sbjct: 126 KQYTDIW----SNDEYLQFIYERLILLRELLSETGSIFVHCDWHKSHYIRLMLDEIFGSE 181
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
NF V + R F +T+ + + SP+++ Y
Sbjct: 182 NFRNEIVWVRSTNPKGSQHESRSFSPFTDTIFYYAKSPQSRLY 224
>gi|330907823|gb|EGH36348.1| adenine-specific methyltransferase [Escherichia coli AA86]
gi|330907869|gb|EGH36392.1| adenine-specific methyltransferase [Escherichia coli AA86]
Length = 227
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + R ++ TD W
Sbjct: 3 RFILGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMHRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|291285942|ref|YP_003502759.1| hypothetical protein G2583_pO550159 [Escherichia coli O55:H7 str.
CB9615]
gi|290765815|gb|ADD59775.1| hypothetical protein G2583_pO550159 [Escherichia coli O55:H7 str.
CB9615]
Length = 227
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFIQGDCVRVMATFPGNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDTLMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|154497807|ref|ZP_02036185.1| hypothetical protein BACCAP_01785 [Bacteroides capillosus ATCC
29799]
gi|150273305|gb|EDN00450.1| hypothetical protein BACCAP_01785 [Bacteroides capillosus ATCC
29799]
Length = 242
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 33/254 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-------- 74
I+ G+++ +L + + D + DPPY + S + D
Sbjct: 9 ILCGDALKLLREFSPGTFDAVITDPPYASG-GRTQAEKNKSTAKKYSSMGDHAPPPFDGD 67
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
++ + WL R++ KP + + + + LQ + VW K
Sbjct: 68 AKDQRSWTRWAAEWLSDARKLCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTAVWDKG 127
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N P +GR Q A + +N D+ +
Sbjct: 128 NSRP-QKGRFRQQAEYIVWG-------------------SNGDMPISRPVPCLPGVFKY- 166
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
++H T+KP L+ ++ T+PG ILDPF GSGT+ A S GIE+
Sbjct: 167 --GNPQNRIHLTEKPLQLMRDVVKI-TEPGGHILDPFAGSGTTVLAAVLEGYSATGIEVT 223
Query: 255 QDYIDIATKRIASV 268
++Y +A +RI+
Sbjct: 224 EEYAKLARERISRE 237
>gi|295091551|emb|CBK77658.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
Length = 319
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/319 (20%), Positives = 105/319 (32%), Gaps = 85/319 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP++SV PPY + L + + E
Sbjct: 7 DTIINRDALYALRELPSESVHCAVTSPPYYALRDYGLTM-----------QIGREDTPEE 55
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
Y RRVL+P+GTLW+ +
Sbjct: 56 YIRRLTVIFRELRRVLRPDGTLWLNIADTYCGTGSKGSSTDPKNPKGRNGQSVSIARKAA 115
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L++ +++ +DI+W+K NPMP R +E + + K
Sbjct: 116 GIKQKDLIGIPWLLAFSLRSDGWYLRSDIIWQKENPMPESCKDRPTRCYEHIFLLTKEKK 175
Query: 161 AK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------ 197
T L + G R R+
Sbjct: 176 YYYDAAAIAEPISPKTAARYRLGRSANSKYAAEIPGQGKVQGLNRARSGGYYDDALMPTT 235
Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ H P L +++ G ++LDPFFGSGT+G AK L R
Sbjct: 236 RNRRDVWTINTVPYKGGHFAAFPPKLAETCILAGCPKGGVVLDPFFGSGTTGLAAKSLDR 295
Query: 247 SFIGIEMKQDYIDIATKRI 265
++GIE+ +Y +A RI
Sbjct: 296 HYVGIEINAEYCALARARI 314
>gi|189499109|ref|YP_001958579.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
phaeobacteroides BS1]
gi|189494550|gb|ACE03098.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
BS1]
Length = 315
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/270 (20%), Positives = 87/270 (32%), Gaps = 34/270 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+++ G++ L + +SV L+ PPY + + + +E
Sbjct: 39 HRLVTGDARK-LGFIEDESVHLVVTSPPYWTLKKYR----------DYENQLGDVADYEE 87
Query: 81 YDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ C RVL P G + V+G R + + + N
Sbjct: 88 FLTELDKVWEHCYRVLVPGGRLICVVGDVCLSRRKNDGRHTVVPLHASIQEHCRKMGFDN 147
Query: 140 FR---GRRFQNAHETLIWASPSPKAKGYTFN----YDALKAANEDVQ------------- 179
+ NA K Y N D E
Sbjct: 148 LSPIIWHKIANASYEANGNGGGFLGKPYEPNAVIKNDIEYILMERKPGGYRKPSVATRVL 207
Query: 180 -MRSDWLIPICSGS-ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ SD S + HP PE L+ R++ + GD +LDPF G+GT+
Sbjct: 208 SVISDENHRQWFQSIWTGLTGASTRTHPAPYPEGLVERLIRMFSFVGDTVLDPFMGTGTT 267
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
A K R+ IG+E+ Y +A KRI
Sbjct: 268 TVAAAKWGRNSIGVEIDPHYYAMAEKRIRQ 297
>gi|326783015|ref|YP_004323412.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
gi|310005433|gb|ADO99821.1| DNA adenine methylase [Prochlorococcus phage P-HM2]
Length = 309
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 72/316 (22%), Positives = 110/316 (34%), Gaps = 75/316 (23%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ I+ G+ L + + PPY N D + + E
Sbjct: 2 KNTILFGDCRDTLPTI-DVKARMCVTSPPYYGLRNYG----------GEQDQIGQEDTPE 50
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNI-------------------------- 111
+ + R VL +GTLWV SY+N
Sbjct: 51 QFIENLVDVFRSVRDVLTDDGTLWVNIGDSYYNYRPGKGQALVKQTVSKTERDQPQQCAR 110
Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+ + L+ +++ DI+W K NPMP R +HE L
Sbjct: 111 RANKLAGLKEKDLIGIPWMLAFALRADGWYLRQDIIWHKPNPMPESVKDRCTKSHEYLFL 170
Query: 155 ASPSPKAKGYTFNYD---------------ALKAANEDVQMRSDWLIPICSGSER----L 195
S + K +Q S ++R +
Sbjct: 171 LSKNKKYYYDNEAIKEPVKQDWGTRDRTSGKYHNPGTGLQPHSGLSKSYERKNKRDVWTI 230
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
NK + H P L+ +++ ++ GDI+LDPF GSGT+G VAKK RS+IG E+ +
Sbjct: 231 TNKPYKGAHFAVFPPDLIEPCILAGSEQGDIVLDPFMGSGTTGMVAKKNFRSYIGCELHK 290
Query: 256 DYIDIATKRIASVQPL 271
DY + T RI S+ P
Sbjct: 291 DYASLQTDRIDSIPPQ 306
>gi|307139302|ref|ZP_07498658.1| putative methylase [Escherichia coli H736]
gi|331643296|ref|ZP_08344428.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
gi|331037523|gb|EGI09746.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
Length = 227
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + R ++ TD W
Sbjct: 3 RFILGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IG+E+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGVELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|321271701|gb|ADW79788.1| putative DNA methyltransferase [Escherichia coli]
Length = 227
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 93/253 (36%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLLPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 HHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|304316269|ref|YP_003851414.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777771|gb|ADL68330.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 647
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/307 (20%), Positives = 107/307 (34%), Gaps = 56/307 (18%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDA-------- 67
+ +I+G IS L + VDLI+ DPP+ + R + + +A
Sbjct: 60 NMLIRGECISACAYLKEQGIEVDLIYIDPPFASGADYAKKVYIRRNPKVAEAIAQAGKEL 119
Query: 68 ------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D W K E Y + L+A + V+ +++V +H +
Sbjct: 120 DIEELKTFEEKMYGDIWRK----EDYLNWMYENLMAIKSVMSETASIFVHLYWHIGHYVK 175
Query: 116 TMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
++ L + + + F H + W S + K
Sbjct: 176 ILMDEIFGEDKLINEIIWYYPDNFQGNVKGFATNHNNIFWYSKNETYISNKVIIPLDKPV 235
Query: 175 NEDVQMRS--------------------------DWLIPICSGSERLRNKDGEKLHPTQK 208
D ++ S D + I S + +PTQK
Sbjct: 236 KRDKRIWSKELGKLVSARNDDGTLIYEEFTEKKADDVWTIGQTSVTKSTSNEYMDYPTQK 295
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PE LL RI+ +ST G ++ D F GSG + AVA KL R FI ++ + I R+ +
Sbjct: 296 PEELLRRIIEASTNEGMLVADFFGGSGVTAAVANKLGRRFIHCDIGINSIQTTRDRLIAD 355
Query: 269 QPLGNIE 275
+ +I
Sbjct: 356 KAEFDIY 362
>gi|291550363|emb|CBL26625.1| DNA modification methylase [Ruminococcus torques L2-14]
Length = 319
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/319 (20%), Positives = 105/319 (32%), Gaps = 85/319 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L++LP++SV PPY + + + + E
Sbjct: 4 DVIINRDALCALQELPSESVHCCVTSPPYFALRDY-----------GLDAQIGQEDTPEQ 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSY--------------------------HNI--- 111
Y + RVL+ +GTLW+ + N
Sbjct: 53 YIDRLTSVFRELYRVLRKDGTLWLNIADTYCGTGNKGGYADPKNPKGRTGQRIARNSRVT 112
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + L+ +++ +DI+W+K NPMP R +E + S K
Sbjct: 113 GCKQKDLIGIPWLLAFSLREQGWYLRSDIIWQKQNPMPESCKDRPTRCYEHIFLLSKEKK 172
Query: 161 AK-----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------------ 197
T + + G R R+
Sbjct: 173 YYYDAAAIAEPLAPTTAERYRRARSTNSKYTQEIPGQGKVQGLNRPRDGGYYDDALMPTT 232
Query: 198 -----------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ H P L +++ G I++DPFFGSGT+G AK L R
Sbjct: 233 RNKRDVWLINTVPYKGAHFAAFPPKLAETCILAGCPKGGIVIDPFFGSGTTGFAAKSLDR 292
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IGIE+ +Y +A RI
Sbjct: 293 HYIGIELNAEYCALARARI 311
>gi|189347088|ref|YP_001943617.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
gi|189341235|gb|ACD90638.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
Length = 308
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/292 (21%), Positives = 112/292 (38%), Gaps = 64/292 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +S+ + +LP SVDL+ PPY L + +S + Y
Sbjct: 16 LYCADSLEFMRQLPDDSVDLVVTSPPYALHFKKEYGN----------------ASQQEYI 59
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNL---------NFWILNDIVW 131
A+ + +R++KP+G+ + GS+ + ++ + + + W
Sbjct: 60 AWFLPFAREIKRIIKPSGSFVLNIGGSWQPGVPVRSLYHYRVLLALVDETGYDLAQEFFW 119
Query: 132 RKSNPMP------NFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDA------- 170
MP N R R +++ E + W P A Y+ +
Sbjct: 120 FNPAKMPAPAEWVNVRRIRVKDSVEYIFWFVKDPMAHADNRKVLQPYSDDMKRLIKRGVK 179
Query: 171 ----------LKAANEDVQMRSDWLIPICSGSE----RLRN--KDGEKLHPTQKPEALLS 214
D + C +E ++N G K+HP + P L
Sbjct: 180 QTIRPSGHVITGTFASDRGGSIPSNLIQCGNNESNSAYVKNSRIAGNKIHPARFPAELPR 239
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ T PGD++LDPF GS T+G VA++L+R ++G+E+++DY + R
Sbjct: 240 FFMEFLTNPGDLVLDPFAGSNTTGHVAERLKRRWLGVELREDYAQESRLRFE 291
>gi|5730144|emb|CAB52546.1| methyltransferase [Bacillus sp.]
Length = 388
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/282 (21%), Positives = 103/282 (36%), Gaps = 37/282 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + I + + ++DLIFADPP+NL + + D S Y
Sbjct: 110 RLFNADCIQTMRNMNDNTIDLIFADPPFNLDKKYE---------SGMNDKI----SKTEY 156
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+T W+ C R+LKP G L++ +L + + I +P
Sbjct: 157 LNWTEEWVTECVRILKPGGALFIWNLPQWNTYTAEILNRNLN-LRHWIAADVKYSLPIAN 215
Query: 142 GRRFQNAHETLIWASPSPKAKGYTF-------------NYDALKAANEDVQMRSDWLIPI 188
AH L++ K + + + + L I
Sbjct: 216 KLY--PAHYALLYYVKGDKPNTFNREGLPLEICRHCAGDIKDYGGYKNKLNIEGMSLTDI 273
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+R+K + + P LL RI+ + GD+I DPF GSGT+ V++ L R +
Sbjct: 274 WHDISPVRHKKYKNRDSNELPLNLLERIISMCSIEGDLIFDPFGGSGTTYIVSEILNRHW 333
Query: 249 --------IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
IGIE + + I+ A +I +Q N T
Sbjct: 334 IGTEIGPIIGIEERFNQIEFAKLKINDIQSKKNQLFTDEMKN 375
>gi|283784041|ref|YP_003363906.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
gi|282947495|emb|CBG87043.1| putative prophage DNA adenine methylase [Citrobacter rodentium
ICC168]
Length = 246
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 85/253 (33%), Gaps = 27/253 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR---PDHSLVDA--VTDSWDKFS 76
+ G+ + VL L ++ D + DPPY+ + R P V +
Sbjct: 10 TLYCGDVLDVLPAL-SERFDAVITDPPYSSGGTHKSDRSMAPSDKYVGHTQYAEFTGDNR 68
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ + W+ L P G V + + + Q +VW K+
Sbjct: 69 DQRSWAFWCSMWISHALHRLNPGGYFMVFSDWRQLPALTDAFQAGGVLWRGLVVWDKT-- 126
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
AS +P + + + + + G R
Sbjct: 127 -----------------QASRAPHTGYFRHQAEYVVWGSNGK-LDKCPHGGPFPGVITQR 168
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
EKLH T KP L++ ++ P +LDPF GSGT+ F GIEM
Sbjct: 169 VVPSEKLHMTAKPVQLMAELVKPLA-PDAHVLDPFMGSGTTAIPVLARGGRFTGIEMTNQ 227
Query: 257 YIDIATKRIASVQ 269
Y DIA RI Q
Sbjct: 228 YFDIACARIEKAQ 240
>gi|254193586|ref|ZP_04900019.1| DNA methylase [Burkholderia pseudomallei S13]
gi|169650338|gb|EDS83031.1| DNA methylase [Burkholderia pseudomallei S13]
Length = 286
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/264 (22%), Positives = 97/264 (36%), Gaps = 34/264 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLV 65
+ D++ +++++ LP S+D++F DPPY+ + Y +
Sbjct: 46 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYINSDTKA 105
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
V D A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 106 AYVDFESDNM-DQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLIL 164
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
VW K+ R F E ++WAS MR +
Sbjct: 165 RGIAVWDKTPGRTRPRRGGFAQQAEFVVWASRGA--------------------MRDCEV 204
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
RL K H T+KP + ++ G ++ D F GSGT A++
Sbjct: 205 YLPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLVAAREAG 260
Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
+IG E Q Y IA +R+
Sbjct: 261 LHWIGCETNQAYHAIAEQRLDITN 284
>gi|318057431|ref|ZP_07976154.1| DNA methylase [Streptomyces sp. SA3_actG]
gi|318075992|ref|ZP_07983324.1| DNA methylase [Streptomyces sp. SA3_actF]
Length = 252
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/262 (22%), Positives = 94/262 (35%), Gaps = 35/262 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE-- 79
+ G+++++L L VD + DPPYN R + + + F+
Sbjct: 6 TLHHGDALTLLPTLI-NPVDAVICDPPYNSGGRTMTARTARTAREKYLTEGGRLHGFDLG 64
Query: 80 ----------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
AY ++ L C R+ +P G V + + LQ +
Sbjct: 65 TFTGDNRDQRAYTSWLSQILAHCYRLTRPGGAALVFTDWRQLAATTDALQAAGYTWRGIA 124
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
VW K P + A+ + V + +
Sbjct: 125 VWLKPIARPQPGRL-------------KQDSEFIVWGSAGAMIPGTDPVYLPGHFTGSQP 171
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G R H TQKP ++ +++ + PG +LDPF GSGT+GA A RSFI
Sbjct: 172 RGKAR--------QHITQKPLDVMQQLVRIA-PPGGTVLDPFAGSGTTGAAALTEGRSFI 222
Query: 250 GIEMKQDYIDIATKRIASVQPL 271
GIE Y ++A R+AS
Sbjct: 223 GIEQSASYAEVARARLASHSGH 244
>gi|28211560|ref|NP_782504.1| chromosome partitioning parB family protein [Clostridium tetani
E88]
gi|28204001|gb|AAO36441.1| chromosome partitioning parB family protein [Clostridium tetani
E88]
Length = 357
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 35/280 (12%)
Query: 7 LAINENQNSIFEWKDKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHS 63
+ I +N + + ++I G+S EKL +L+ DPPYN+ G + +
Sbjct: 100 VPIIKNGDVWLLGRHRLICGDSTKFETYEKLMEGKKANLVVTDPPYNVSYEGTAGKIQN- 158
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
D + Y F L G+++V + ++ F
Sbjct: 159 ---------DNMGDKKFY-EFLLNSYKGMYESLADGGSIYVFHADKETVNFRVAFKDAGF 208
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ +W K++P+ +Q HE ++ + + N D +S
Sbjct: 209 FCHQTCIWIKNSPVLG--RCDYQYNHEPILVGWKPTAGHKFYGDRKQRTTWNFDRPTKS- 265
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
K HPT KP AL++ + +S+ I+LDPF GSG++ ++
Sbjct: 266 ------------------KYHPTMKPIALVAYPITNSSLTNSIVLDPFGGSGSTLIACEQ 307
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
R IE+ + Y D+ KR + G++
Sbjct: 308 TDRICYTIELDEKYADVIVKRYIGQVDSDEAVFLIRNGEK 347
>gi|60418614|gb|AAX19734.1| Csp231I DNA methyltransferase [Citrobacter sp. RFL231]
Length = 301
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/292 (21%), Positives = 104/292 (35%), Gaps = 46/292 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------------GQLY 58
+I +SIS L+KL S+DLI +D PY + + G ++
Sbjct: 5 LLINADSISELKKLEDNSIDLILSDIPYGIGADDWDVLHKNTNTAYLGNSPAQKQAGNVF 64
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ ++ +D+ K Y + + W RVLKP GT +V R L
Sbjct: 65 KRRGKPINGWSDADKKI--PAEYYQWCQTWASEWLRVLKPGGTAFVFAGRRFAPRCIVAL 122
Query: 119 QNLNFWILND---------------IVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAK 162
++ F + + + M + + L P
Sbjct: 123 EDAGFNFRDMLSWIKPKATHRAQRLSIVYERRGMQDESLKWNGWRIGNLRPIFEPIIWCF 182
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKPEALLSRIL 217
+ A ++ + + +G E + LH QKP LL ++
Sbjct: 183 KPYKHTIADNVLEHNLGAYNQFAFEEITGHFNNTLEIGMSPKEGGLHDAQKPVKLLETLI 242
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
T PG ++LDPF GSG++ A L+R FI IE + I R++ +
Sbjct: 243 SLVTIPGQVVLDPFAGSGSTAIAALNLKRDFIMIEKDPNIFSIMNDRLSKSK 294
>gi|308273843|emb|CBX30444.1| hypothetical protein N47_Q17670 [uncultured Desulfobacterium sp.]
Length = 321
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/286 (22%), Positives = 105/286 (36%), Gaps = 42/286 (14%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
+ E DKI S +++ +P SV L+ PPYN V +
Sbjct: 49 NHIPDESIDKIYCK-SSEIMDDIPDYSVHLMVTSPPYN-----------------VKKEY 90
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------YHNIF-RIGTMLQNLNFWI 125
DK S + Y + + L G + + Y + I + L +++
Sbjct: 91 DKDLSLDEYRTLLKVVFKETYKKLVTGGRACINIANLGRKPYIPLHSYIIEDMLQLGYFM 150
Query: 126 LNDIVWRK--SNPMPNFRGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANE 176
+I+W K S+ G A HE ++ S ++ N D +
Sbjct: 151 RGEIIWNKASSSSPSTAWGSWQSAANPVLRDIHEYILVFSKESFSRKRGNNKDTIAKEEF 210
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+S W P S HP PE L R++ T D++LDPF GSGT
Sbjct: 211 LEWTKSVWTFPAVSARS--------IGHPAPFPEELPHRLIQLYTFEKDVVLDPFCGSGT 262
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
+ A K R +IG +++ +Y+ +A +RI N+ K
Sbjct: 263 ACLTALKDGRHYIGYDIEPEYVKLANRRIKERSSQQNLFEHEPPSK 308
>gi|304383947|ref|ZP_07366404.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
marshii DSM 16973]
gi|304335025|gb|EFM01298.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
marshii DSM 16973]
Length = 648
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/319 (17%), Positives = 107/319 (33%), Gaps = 76/319 (23%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRP------------------ 60
+ +++G +S L K VDL++ DPP+ +
Sbjct: 63 NLVLRGECLSACAYLKEKGMKVDLVYIDPPFASGADYAKKVYIRRNPKVAEAIKQAETEI 122
Query: 61 -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ D WDK E Y + L+A + V+ +++V +H +
Sbjct: 123 DNEDLRNFEEKMYGDVWDK----ERYLNWMYENLVAIKAVMSDTASIYVHLDWHIGHYVK 178
Query: 116 TMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP----------------- 157
++ + + F H+T+ S
Sbjct: 179 ILMDEIFGEDKFRNEIVWHYPGGIKAIPTYFPRKHDTIYVYSKGDIVTYNVQRKSIQENS 238
Query: 158 -SPKAKGYTFNYDALKAAN---EDVQMRSDWLIPICSGSERLRNKD-------------- 199
+ Y+ + +A+ N +D ++ S + R ++
Sbjct: 239 LYNRWIKYSEDGEAITYRNFPRKDKVKFEMYVNRFISQNGRKPQENDELYRFEGAMIDDV 298
Query: 200 -----------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ + TQKPEALL RI+ +S+ G ++ D F GSG + AVA +L R F
Sbjct: 299 WSDCPAVFRSSEDINYSTQKPEALLERIIKASSNEGMLVADFFGGSGVTAAVANRLGRKF 358
Query: 249 IGIEMKQDYIDIATKRIAS 267
I ++ + I+ R+
Sbjct: 359 IHCDIGINSIETTRDRLRK 377
>gi|308274323|emb|CBX30922.1| hypothetical protein N47_E44340 [uncultured Desulfobacterium sp.]
Length = 312
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/295 (18%), Positives = 99/295 (33%), Gaps = 49/295 (16%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
G+ + +L++ P +LI PPY + + + Y +
Sbjct: 3 NGDCLEILKQYPDNFFNLIVTSPPY---ADSRSKTYGGIKPN-------------EYVGW 46
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNFWILNDIVWRKSNP 136
RVLK +GT + + + L+ + + VW K N
Sbjct: 47 FLLRAKEFLRVLKSDGTFILNIKEKAVNGERHTYVLELILALREQGWLWTEEFVWHKKNC 106
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY-----------------------TFNYDALKA 173
P RF++A E + + S K Y ++
Sbjct: 107 FPGKWPNRFRDAWERCLQFNKSNKFNMYQDEVMVPMGDWAKNRLKKLSNTDRTRDESKVN 166
Query: 174 ANEDVQMRSDWLIPICSGSERLR--NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ + + + + L + K H P++L + TK D +LDPF
Sbjct: 167 SGFGKNVSNWVDRDMAYPTNVLHFATECYNKNHSAVFPKSLPEWFIKLFTKEHDWVLDPF 226
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
GSGT+ VA+ L R+ +GI++ +Y +A +R A Q + +
Sbjct: 227 VGSGTTAEVAQNLNRNSVGIDILPEYCKLANERAAHYQYRICEDKIEYETDKQRK 281
>gi|313844059|ref|YP_004061722.1| hypothetical protein OlV1_089 [Ostreococcus lucimarinus virus OlV1]
gi|312599444|gb|ADQ91466.1| hypothetical protein OlV1_089 [Ostreococcus lucimarinus virus OlV1]
Length = 305
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/297 (20%), Positives = 111/297 (37%), Gaps = 53/297 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I + + ++KLP SVD++ DPPY L + + D +V + K
Sbjct: 4 NRIELISCLDGIKKLPENSVDMVCTDPPYFLDGLGNDWDKGKLDKKGASSVVGNLPKGMK 63
Query: 78 FE-----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
F+ + F RVLKP G S + +++ F I + + W
Sbjct: 64 FDRKQSKNFYNFYSEVSKEIFRVLKPGGAFVSFSSPRLYHSMTMAIEDGGFEIRDMLAWI 123
Query: 133 KSNP----------------------------MPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ ++R + + A E + A + Y
Sbjct: 124 YTQSQVKAFSQDHIIEKDKTKTREEKDNLKEVCKDWRTPQLKPAIEPMCLAVKPIEG-RY 182
Query: 165 TFNYDAL---------KAANEDVQMRSDWLIPI------CSGSERLRNKDGE-KLHPTQK 208
N++ + + + + + +++ G+ H + K
Sbjct: 183 IDNFEKYGTGLLNTSEETKVDGKFPSNVMTVQEGVLDSVFLVKKPTKSEKGDFNTHLSVK 242
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
P L+ ++ TK I+LDPF GSGT+ A K R +IG ++ Q+Y+DI+ KR+
Sbjct: 243 PVDLIEHLIQLFTKKDAIVLDPFMGSGTTAVAAVKSNRKYIGFDINQEYVDISNKRL 299
>gi|50346323|ref|NP_052910.2| putative methylase [Plasmid R100]
gi|133756470|ref|YP_001096426.1| putative methylase [Escherichia coli]
gi|161343771|ref|NP_957571.2| putative methylase [Escherichia coli]
gi|301328054|ref|ZP_07221208.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
gi|89033295|gb|ABD59973.1| hypothetical protein [Escherichia coli]
gi|300845452|gb|EFK73212.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
Length = 227
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 93/253 (36%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ P +VD I DPPY + R ++ TD W
Sbjct: 3 RFILGDCVRVMATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 51 ---LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|46206074|ref|ZP_00047737.2| COG0863: DNA modification methylase [Magnetospirillum
magnetotacticum MS-1]
Length = 181
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/118 (68%), Positives = 95/118 (80%), Gaps = 1/118 (0%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDKFSSF 78
D+I+ G+ I+ +E+LPA SVD +FADPPYNLQL L RPD S+VDAV D WDKFSSF
Sbjct: 44 LDEILVGDCIAAMERLPASSVDCVFADPPYNLQLGEAGLTRPDQSVVDAVDDDWDKFSSF 103
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
AYD FTRAWL A RRV+KPN TLWVIGSYHNIFR+G+ LQ+L +WILNDIVWR+ P
Sbjct: 104 SAYDEFTRAWLTAARRVMKPNATLWVIGSYHNIFRVGSALQDLGYWILNDIVWRQGQP 161
>gi|163816174|ref|ZP_02207542.1| hypothetical protein COPEUT_02358 [Coprococcus eutactus ATCC 27759]
gi|158448594|gb|EDP25589.1| hypothetical protein COPEUT_02358 [Coprococcus eutactus ATCC 27759]
Length = 321
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 115/320 (35%), Gaps = 49/320 (15%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKG--NSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
M ++ SL + + + K++ + L++LP KS+ LI DPPYNL+L G
Sbjct: 19 MRKEESLKNKISSDFEMPAEIKLLHSISDCGVFLKQLPDKSIQLICIDPPYNLELAG--- 75
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----NIFRI 114
WD + + Y + W+ RVL NG++ + G +
Sbjct: 76 -------------WDIYEN---YIEWASKWIYEAYRVLSDNGSMVIFGGIQFRDAKSGDL 119
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSPKAKGYTFNYDALK 172
++Q + +V N R F N HE IW + Y F+ D+++
Sbjct: 120 LDIIQYIRKNTKFKLVNTIIWHYKNGMSAHRFFANRHEEAIWLVK---SNDYYFDLDSVR 176
Query: 173 A---------------ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
N + + + N HPTQKP A++ R +
Sbjct: 177 VPYSEEDLKVALRDKRLNPETTRKGKNPTNVWEIGRLNGNSKERVGHPTQKPVAIIERFI 236
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
+ + PG +LD F GSGT G V R+ + + ++ A L
Sbjct: 237 KALSYPGATVLDFFAGSGTVGRVCINEGRNCLMCDSDNKSLEY----FAKHISLMEELGQ 292
Query: 278 VLTGKRTEPRVAFNLLVERG 297
++ E F +G
Sbjct: 293 NTQYRKVENIQDFFEYNTKG 312
>gi|313145883|ref|ZP_07808076.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
fragilis 3_1_12]
gi|313134650|gb|EFR52010.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
fragilis 3_1_12]
Length = 261
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/280 (21%), Positives = 102/280 (36%), Gaps = 38/280 (13%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + ++++ SVD I AD PY + L R + S+ WD+ A
Sbjct: 2 DCMEGMKQIADGSVDAIIADLPYGV-----LNRSNPSVN------WDRQIPLAA------ 44
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
W RR+ KP+ + + G +F ML W N + + R
Sbjct: 45 LW-EQYRRITKPDSPIILFG--QGLFSAWLMLSQPRLWRYNLVWQKDRVTGHLNAKRMPL 101
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERLRN----- 197
HE ++ A + N + + + R+ +
Sbjct: 102 RQHEDILVFYKKQPAYHPQMTPCPPERRNHGRRKTEGFTNRCYGTMKLSPVRIADDKYPT 161
Query: 198 ---------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
K G HPTQKP AL+ ++ + T GD++LD GSGT+ A + R +
Sbjct: 162 SVIFMPKEHKKGAFYHPTQKPVALMEYLIRTYTDEGDVVLDNCIGSGTTAVAAIRTGRHY 221
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
IG E++Q Y +IA ++I N + +
Sbjct: 222 IGFEIEQAYCEIAERQIQEELECRNKVQEEKEIREEKQNQ 261
>gi|53802972|ref|YP_115293.1| prophage MuMc02, DNA methyltransferase [Methylococcus capsulatus
str. Bath]
gi|53756733|gb|AAU91024.1| prophage MuMc02, DNA methyltransferase [Methylococcus capsulatus
str. Bath]
Length = 265
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/275 (21%), Positives = 86/275 (31%), Gaps = 32/275 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT----------DS 71
++ + + V + SV + DPPY R S V+ D
Sbjct: 10 RLFQNDFREVASLITPGSVAAVITDPPYGSGGFTVKDRLKSSKTKYVSSDASYQKTLPDI 69
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
EA+ +A R VL G L + + N ++ ++ + V
Sbjct: 70 DGDSLHPEAWKELMKAACAVARSVLMNGGVLAMFIDWRNKPQLQEIIHGSGLALRG-CVA 128
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
F+N E L+WA+ P G
Sbjct: 129 WDKGNGARPMKNGFKNQAEYLLWATQGPTPTR--------------------EPPVYLPG 168
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
R K+H TQKP AL+ I+ PG + D F GSGT+G A K R FIG
Sbjct: 169 VLRHSTLSNGKVHITQKPLALMEDIVQ-VCPPGGTVFDMFMGSGTTGVAALKHGRRFIGC 227
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
E +Y D + +R P
Sbjct: 228 ESVPEYFDASVRRCREACPEEQTGRPESPSANPAQ 262
>gi|332347857|gb|AEE60098.1| putative DNA methylase [Escherichia coli UMNK88]
Length = 227
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+GN + V+ P +VD I DPPY + D + + +
Sbjct: 3 RFIQGNCVRVMATFPGNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|205357999|ref|ZP_03223900.1| DNA methylase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205328364|gb|EDZ15128.1| DNA methylase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
Length = 307
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 71/303 (23%), Positives = 94/303 (31%), Gaps = 58/303 (19%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
E I G+ + V+ L SVDLI DPPY L A T WD
Sbjct: 4 EMNHTIYHGDCLDVMPTLEHGSVDLIVCDPPYGTMKGANL-----DTWSAATTQWDDAID 58
Query: 78 FEAYDAFTRAWLLA-----------CRRVLKPNGTLWVIGSYHNIF---RIGTMLQNLN- 122
A A L L + SY + G LQ N
Sbjct: 59 PVALFAVCERVLRVNGALVLFAQEPYTSRLITQAHSNLPFSYRLAWEKEHFGNPLQAKNA 118
Query: 123 ----------FWILNDIVWRKSNPMPNFRGRRFQNAH-------------ETLIWASPSP 159
F+ + + R + F A + +
Sbjct: 119 PVSYFEDVLVFFKKYEPNLNHPMREYSRRVKAFTRATAVQVERKLGHRGADHFLGCDAVQ 178
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH--------------- 204
+ Y+ L A M +R+ N K H
Sbjct: 179 FSLPTRSTYEQLTTAYNLTAMPGFLAYDEMKLPQRVFNLPPGKRHKPNILKYARDREKYH 238
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PTQKP ALL ++ + + PGD +LD GSG++G R FIGIE +Q Y DIA R
Sbjct: 239 PTQKPVALLEDLIQTYSNPGDTVLDFTMGSGSTGVACVNTGRRFIGIEKEQKYFDIAAAR 298
Query: 265 IAS 267
I
Sbjct: 299 IEK 301
>gi|160886756|ref|ZP_02067759.1| hypothetical protein BACOVA_04769 [Bacteroides ovatus ATCC 8483]
gi|298383581|ref|ZP_06993142.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 1_1_14]
gi|156107167|gb|EDO08912.1| hypothetical protein BACOVA_04769 [Bacteroides ovatus ATCC 8483]
gi|298263185|gb|EFI06048.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 1_1_14]
Length = 267
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 63/272 (23%), Positives = 97/272 (35%), Gaps = 41/272 (15%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + I + I ++ + SVD + AD PY + WD+
Sbjct: 1 MIEIDN-IYNMDCIEGMKLMANGSVDAVIADLPYGVLNRSNKAV-----------HWDRQ 48
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
EA W RR+ KP + + IF ML W N + +
Sbjct: 49 IPLEA------LW-EQYRRITKPGSPVILFA--QGIFSARLMLSQPRMWRYNLVWRKDRV 99
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
R HE +I + N + ++D C G +L
Sbjct: 100 TGHLNANRMPLRQHEDIIVFYDRQPVYHPQMMPCPPERKNHGRR-KTDGFTNRCYGEMKL 158
Query: 196 R-------------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+K G HPTQKP AL+ ++ + T GD++LD GSGT
Sbjct: 159 APVRVAEDKYPTSVISIPKEHKTGAFYHPTQKPVALIEYLMRTYTNEGDVVLDNCIGSGT 218
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ A + R +IG E++ Y +IA +RI
Sbjct: 219 TAIAAIRTGRHYIGFEIEPTYCEIAGRRIREE 250
>gi|325661423|ref|ZP_08150049.1| hypothetical protein HMPREF0490_00783 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472372|gb|EGC75584.1| hypothetical protein HMPREF0490_00783 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 340
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 65/325 (20%), Positives = 112/325 (34%), Gaps = 38/325 (11%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K+ I G+ + L+K+ +SVDL+ PPY + +
Sbjct: 1 MRLKNTWINGDCLKELKKMDDESVDLVITSPPY----------HNLRVYSNDPCDLSNCE 50
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKS 134
S+E Y + C RVLKP G + +N I R M Q ++ I+
Sbjct: 51 SYEEYYYLLGLVIAECSRVLKPGGKFVMQFEDYNYTIGRDNKMGQESLTGDIDRIMKEHD 110
Query: 135 NPMPNFRGRRFQNAHETL----IWASPSPKA----------KGYTFNYDALKAANEDVQM 180
+ R +A + + KA Y + + +
Sbjct: 111 MSLWTKAFWRKYSAQRAMLAQGNLYYRNMKARDTILAANVGFVYVYKKAGECELIKASDI 170
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ G + N H T E L+ R + + PGD+ILDPF G+GT V
Sbjct: 171 TLEEWADWADGVWNISNSG--IGHTTPFAEELVKRCIKLWSCPGDVILDPFAGAGTVNKV 228
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV------ 294
A + R+ IGIE+K+++ D+A + + L+
Sbjct: 229 AIENNRNAIGIELKKEFYDLAN--VERFNKWDDSVYETEDSIEKMKERFNEQLLIGKEQS 286
Query: 295 ERGLIQPGQ--ILTNAQGNISATVC 317
RG + + L + + + + +
Sbjct: 287 ARGKAEKEEQKQLRDRKKELRSEIK 311
>gi|161525447|ref|YP_001580459.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189349817|ref|YP_001945445.1| putative DNA methylase [Burkholderia multivorans ATCC 17616]
gi|160342876|gb|ABX15962.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
17616]
gi|189333839|dbj|BAG42909.1| putative DNA methylase [Burkholderia multivorans ATCC 17616]
Length = 421
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 31/252 (12%)
Query: 21 DKIIKGNSI--SVLEKL-PA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+++ G++ L P + D++F DPPYN+ + + +
Sbjct: 171 HRLVCGDATTAEAFALLLPDGERADMVFTDPPYNVNYANSAKDKLRGKHRPILND----A 226
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E++ F L + G ++V S + + + + I+W K+
Sbjct: 227 LGESFYDFLYDALALINAHTR--GAIYVAMSSSELDTLQAAFRAVGGHWSTFIIWAKNTF 284
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ Y + A + D W ++
Sbjct: 285 TLGRA------------DYQRQYEPILYGWPEGAERYWCGDRDQGDVWQ---------IK 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
LHPT KP L+ R + +S++PGD++LDPF GSGT+ A+K R IE+
Sbjct: 324 KPQKNDLHPTMKPVELVERAIRNSSRPGDVVLDPFGGSGTTLIAAEKAGRVARLIELDPK 383
Query: 257 YIDIATKRIASV 268
Y D+ +R
Sbjct: 384 YTDVIVRRWQEW 395
>gi|53722104|ref|YP_111089.1| site-specific DNA methyltransferase [Burkholderia pseudomallei
K96243]
gi|52212518|emb|CAH38544.1| putative site-specific DNA methyltransferase [Burkholderia
pseudomallei K96243]
Length = 291
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/259 (22%), Positives = 94/259 (36%), Gaps = 32/259 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 46 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYINSDTKT 105
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 106 VYTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 165
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 166 GVAVWDKTPGRTRPRRGGFAQQAEFVVWASRGA--------------------MRDCEVY 205
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A++
Sbjct: 206 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLVAAREAGL 261
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IG E Y IA R+
Sbjct: 262 HWIGCETNAAYHAIALHRL 280
>gi|288801506|ref|ZP_06406958.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella sp.
oral taxon 299 str. F0039]
gi|288331587|gb|EFC70073.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella sp.
oral taxon 299 str. F0039]
Length = 648
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 71/385 (18%), Positives = 133/385 (34%), Gaps = 94/385 (24%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNG-------------QLYRPDHSLV 65
+ +++G +S L + VDL++ DPP+ + ++ + D + +
Sbjct: 63 NLVLRGECLSACAYLKERGVKVDLVYIDPPFASGADYAKKIYIRRNPKVAEIIKQDETEI 122
Query: 66 DA----------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D+ D WDK E Y + L+A + V+ +++V +H +
Sbjct: 123 DSEELRNFEEKMYGDVWDK----EGYLNWMYENLVAIKAVMSDTASIYVHLDWHIGHYVK 178
Query: 116 TMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP----------------- 157
++ + + F H+T+ S
Sbjct: 179 ILMDEIFGEDKFRNEIVWHYPGGIKAIPTYFPRKHDTIYVYSKGDIVIYNVQRKSIQENS 238
Query: 158 -SPKAKGYTFNYDALKAAN---EDVQMRSDWLIPICSGSERLRNKD-------------- 199
+ Y+ + +A+ N +D ++ S + R ++
Sbjct: 239 LYNRWIKYSEDGEAITYKNFPRKDKVKFEMYVNRFISQNGRKPQENDELYRFEGAMIDDV 298
Query: 200 -----------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ + TQKPEALL RI+ +S+ G ++ D F GSG + AVA +L R F
Sbjct: 299 WSDCPAVFRSSEDINYSTQKPEALLERIIKASSNEGMLVADFFGGSGVTAAVANRLERKF 358
Query: 249 IGIEMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
I ++ + I+ R+ + +E+ P + L +GLI PG +
Sbjct: 359 IHCDIGINSIETTRDRLCKAEAEFEVMEVKDGVSLYRNPVQTMDKL--KGLI-PGLRNED 415
Query: 308 AQGNISATVCADGTLISGTELGSIH 332
A GSIH
Sbjct: 416 ALDKFW--------------EGSIH 426
>gi|326406568|gb|ADZ63639.1| phage DNA methylase [Lactococcus lactis subsp. lactis CV56]
Length = 271
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/267 (22%), Positives = 94/267 (35%), Gaps = 49/267 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + ++++P SVD+I D PY SWD F+
Sbjct: 4 LNKIYNEDCSEGMKRIPDGSVDMILCDLPYGT----------------TNCSWDIIIPFD 47
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
R++K NG + + G+ + + D +W K
Sbjct: 48 -------KLWKQYERIIKDNGAIVLTGAEPFSSHLRL---SNLKIYKYDWIWDKVKGTGF 97
Query: 140 FRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG------- 191
++ HE + + T+N N RS G
Sbjct: 98 LNAKKQPMRNHEIISVFYKNQP----TYNPQKTSGHNLKTSFRSSEHQTDVYGEMKQDYT 153
Query: 192 ---SERLR--------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ER + LHPTQKP AL ++ + T GDI+LD GSGT+
Sbjct: 154 YSSTERYPRSIQIFSTDTQNSSLHPTQKPVALFEYLIKTYTNKGDIVLDNCMGSGTTAIA 213
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
R+FIG E ++Y + + +RI +
Sbjct: 214 CLNTERNFIGFETNEEYYNKSLQRIKN 240
>gi|148554497|ref|YP_001262079.1| DNA methylase N-4/N-6 domain-containing protein [Sphingomonas
wittichii RW1]
gi|148499687|gb|ABQ67941.1| DNA methylase N-4/N-6 domain protein [Sphingomonas wittichii RW1]
Length = 483
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 20/288 (6%)
Query: 21 DKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+++ L ++D +F+DPPYN+++ G + + + S
Sbjct: 211 HRLLCGDALDPGSYALLLDGRTIDGVFSDPPYNIKIEGVVSGLGRTRHKDFAMGVGEMSD 270
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + F +LL CR P ++ + + + ++ F +N VW K +
Sbjct: 271 -DQFRTFLGDYLLRCREHASPGAVIFACMDWRQVDLLMLAGRDAGFHRINKAVWHKGSGG 329
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G +++A+E ++ T A R+ + +G+ R +
Sbjct: 330 M---GSLYRSAYEEVVVF--------CTEPTLATNNVLLGKNGRNRTNLWTYAGASRKGS 378
Query: 198 KDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
G+ L HPT KP L+ L TK GD++ DPF GSGT+ A+ + R GIE+
Sbjct: 379 SAGKALADHPTPKPVELVVDALQDVTKRGDLVFDPFMGSGTTLVAAQAVGRIACGIELDP 438
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
Y+D+A R Q G + +GK E V + G I+ +
Sbjct: 439 GYVDVAILR--WQQMTGKPAIHAESGKTFE-EVGLDRSNRDGAIEAAE 483
>gi|328952292|ref|YP_004369626.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
gi|328452616|gb|AEB08445.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 298
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 64/282 (22%), Positives = 108/282 (38%), Gaps = 55/282 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I G+++SVL L + PPY + + + Y
Sbjct: 16 VICGDALSVLRNLESGICRCCITSPPYWGLRDYGV---------PTDHQIGAETHLVDYI 66
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGS---------YHNI---------------------- 111
RVL P+GTLW+ + +I
Sbjct: 67 KNLVEIFTEIHRVLTPDGTLWLNLGDSYTSGNRTWRDIDKKNPARYMRYRPPTPKGLKPK 126
Query: 112 ------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+R+ LQ +++ +DI+W K N P R +HE + S + K Y
Sbjct: 127 DLIGTPWRVAIALQEQGWYLRSDIIWFKPNCQPESVKDRPTRSHEYIFLFSKTEK---YY 183
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+NY+A+ ++ + + + H P L++ L++ ++ GD
Sbjct: 184 YNYEAI------LETSNSHGKRNRRTVWSINTGAFKGAHFATFPSKLVALCLLAGSEFGD 237
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+LDP FGSGT G V KL R FIGIE+ ++Y+ +A +R+
Sbjct: 238 TVLDPCFGSGTVGEVCLKLGRKFIGIEINENYVVLARERLKW 279
>gi|300713298|ref|YP_003739337.1| DNA methylase family protein [Erwinia billingiae Eb661]
gi|299060369|emb|CAX53619.1| DNA methylase family protein [Erwinia billingiae Eb661]
Length = 226
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/251 (23%), Positives = 92/251 (36%), Gaps = 41/251 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ I ++ P ++VD I DPPY + R ++ TD W
Sbjct: 3 RFIQGDCIQIMSGFPDRAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ R + F I+ V+ K+ +
Sbjct: 51 ---LQPACHEMYRVLKNDSLMVSFYGWNRADRFISAWTAAGFRIVGHFVFTKTYAS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D G
Sbjct: 105 SAYVGYTHECAYVLAKGRPRLPEKPLPDVQGW-----------------------KYTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T PG I+LDPF GSG+S A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSSCVAALQSGRRYIGIELMEKYHRAG 201
Query: 262 TKRIASVQPLG 272
+R+A+VQ
Sbjct: 202 QQRLAAVQRSM 212
>gi|189499041|ref|YP_001958511.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
phaeobacteroides BS1]
gi|189494482|gb|ACE03030.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
BS1]
Length = 441
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/278 (19%), Positives = 90/278 (32%), Gaps = 31/278 (11%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
+ S+ II+G+S + L +S+ L+ PPY +
Sbjct: 8 KKSVLTTHHTIIQGDSRQ-MNLLSDRSIHLVITSPPYWQLKDY-----------GTESQI 55
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-----NIFRIGTMLQNLNFWILN 127
S+E+Y C R L P L V R +
Sbjct: 56 GFHESYESYINNLNLVWSECERALYPGCRLCVNIGDQFARSVYYGRYKVIPIRTEIIRFC 115
Query: 128 DIVWRKSNPMPNFRGRRFQNAH---ETLIWASPSPKAK---------GYTFNYDALKAAN 175
+ + ++ N + S + DA K
Sbjct: 116 ETIGFDYMGAVIWQKVTTTNTTGGASIMGSFSYPRNGILKLDYEFILIFKKLGDAPKPTK 175
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
E + + + N G K H PE L R++ GD +LDPF G
Sbjct: 176 EQKERSAMTKEEWNTYFSGHWNFAGAKQDGHIAMFPEELPRRLIKMFAFEGDTVLDPFMG 235
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
SGT+ A+ L R+ +G E+ ++++I+ +++ QP
Sbjct: 236 SGTTNLAARNLGRNSVGYEINSEFVEISKQKLGVNQPD 273
>gi|332299507|ref|YP_004441428.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
DSM 20707]
gi|332176570|gb|AEE12260.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
DSM 20707]
Length = 639
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/325 (20%), Positives = 113/325 (34%), Gaps = 71/325 (21%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDA-------- 67
+ I++G +S L + VDL++ DPP+ + R + + +A
Sbjct: 64 NLILRGECVSACAYLKDQGIEVDLVYIDPPFASGADYAKKVYLRRNPKVAEAVAKAEKEL 123
Query: 68 ------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D WDK E Y + LLA + V+ P +++V +H +
Sbjct: 124 DNEELRAFEETMYGDVWDK----ELYLNWMYENLLAIKSVMSPTASIYVHLDWHIGHYVK 179
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
++ + R + H+ + + + + Y FNY A+
Sbjct: 180 ILMDEIFGEENFRNEIIWCYKERESSKRYYNRKHDCIYFYTR---SDDYVFNYRAIWEEY 236
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL-------------------------------- 203
V ++ + RLR KDG
Sbjct: 237 SPVTLKKFKFLDQNGEPYRLRYKDGRNDPTEESENTYRQYLKDAEGTLPRDWFELAIVNQ 296
Query: 204 -------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ TQKPEALL R + +S+ G ++ D F GSG + AVA KL R FI ++ +
Sbjct: 297 AATERVEYATQKPEALLDRFIKASSDEGMLVADFFGGSGVTAAVATKLGRRFIHSDVGVN 356
Query: 257 YIDIATKRIASVQPLGNIELTVLTG 281
I R+ + L + G
Sbjct: 357 SIQTTRDRLRKIPGATAQILEIQDG 381
>gi|327314476|ref|YP_004329913.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola F0289]
gi|326945918|gb|AEA21803.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola F0289]
Length = 429
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 97/288 (33%), Gaps = 45/288 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K +I G+S + +L +SV LI PPY + + + +E
Sbjct: 6 KHIVINGDSRQ-MSELEDESVHLIVTSPPYWQLKDY-----------GTENQIGFHNDYE 53
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------------------IFR 113
Y C RVL L + +
Sbjct: 54 TYINHLNLVWKECFRVLHKGCRLCINIGDQFARSTYYGRYKIIPIHTEIIKFCETIGLDF 113
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+G ++ + PN R + E ++ A +
Sbjct: 114 MGQIIWQKVTTMNTSGGANIMGSYPNPRNGIVKLDFEYILLFKKQGNAPKPSREQK---- 169
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
E+ M ++ +G +K H PE L R++ + PG+ +LDPF G
Sbjct: 170 --ENSIMTNEEWNTYFNGHWYFPGAKQDK-HLAMFPEELPHRLIKMFSFPGETVLDPFMG 226
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
SGT+ A+ L R+ +G E+ QD+I I +RI + +E+ ++
Sbjct: 227 SGTTALAARNLNRNSVGYEINQDFIPIIRERIENNDVFTEVEMEIIKQ 274
>gi|331647000|ref|ZP_08348099.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
gi|331044317|gb|EGI16448.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
Length = 226
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 41/252 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I GN + ++ P ++VD I DPPY + R S+ TD W
Sbjct: 3 RLILGNCVDIMSGFPDRAVDFILTDPPYLVGFRD---RSGRSIAGDRTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + + ++ + R + F ++ +V+ K+ +
Sbjct: 51 ---LQPACNQMYRVLKKDALMMSFYGWNRVDRFMAAWKKAGFSVVGHLVFTKNYSS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 SAYVGYRHECAYVLAKGRPALPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GS ++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSASTCVAALQAGRRYIGIELMEQYHKAG 201
Query: 262 TKRIASVQPLGN 273
+R+ +VQ
Sbjct: 202 IERLTAVQRAMQ 213
>gi|224025034|ref|ZP_03643400.1| hypothetical protein BACCOPRO_01768 [Bacteroides coprophilus DSM
18228]
gi|224018270|gb|EEF76268.1| hypothetical protein BACCOPRO_01768 [Bacteroides coprophilus DSM
18228]
Length = 263
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 60/267 (22%), Positives = 90/267 (33%), Gaps = 38/267 (14%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KD+I + + ++++ +SVD I AD PY + N WDK E
Sbjct: 4 KDQIYHMDCLKGMKQMADRSVDAIIADLPYGVLNNRNTSAG-----------WDKQLPLE 52
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
R+ KP + + G +F +L W N + +
Sbjct: 53 -------KLWEEYLRISKPESPVILFG--QGMFTARLVLSQPKIWRYNLVWHKDRVTGHL 103
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ----MRSDWLIPICSGSERL 195
R HE +I + N + + R+
Sbjct: 104 NANRMPLRQHEDIIVFYRKQPVYHPQMKPCPAEQRNHGRSKTRGFTNRCYGQMNLTPIRI 163
Query: 196 RNKDGEKL--------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ HPTQKP ALL ++ + T GD +LD GSGT+ A
Sbjct: 164 ADDKYPTSVIAIAKEHCKGCFYHPTQKPVALLEYLIRTYTNEGDTVLDSCIGSGTTMVAA 223
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASV 268
+ R FIG E +Q Y + A RIA
Sbjct: 224 IRTGRHFIGFETEQSYFETALLRIAEE 250
>gi|325268609|ref|ZP_08135239.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
16608]
gi|324989137|gb|EGC21090.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
16608]
Length = 441
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 52/260 (20%), Positives = 97/260 (37%), Gaps = 32/260 (12%)
Query: 21 DKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++++ G+ + L V D+I DPPYN+ G D++ +
Sbjct: 192 NRLMCGDCRSKKDIVTLMNGRVADMILTDPPYNVNYEGGGDSKLKIQNDSMEND------ 245
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F ++ ++K G+ +V + ++ F I +W K + +
Sbjct: 246 --LFLRFLQSVFNVMFSIVKAGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV 303
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y + A N D + + W
Sbjct: 304 MGR------------QDYQWQHEPCLYGWKPGAAHFWNSDRKQTTIWNFDKP-------- 343
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
++HPT KP AL++ + +STK GDI++D F GSG++ ++ R G+E+ Y
Sbjct: 344 -KANRIHPTMKPIALMAYPITNSTKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDPKY 402
Query: 258 IDIATKRIASVQPLGNIELT 277
+ +R S+ P I L
Sbjct: 403 VSATVRRFMSMFPQQPILLE 422
>gi|194015228|ref|ZP_03053844.1| DNA methylase [Bacillus pumilus ATCC 7061]
gi|194012632|gb|EDW22198.1| DNA methylase [Bacillus pumilus ATCC 7061]
Length = 253
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 54/259 (20%), Positives = 97/259 (37%), Gaps = 39/259 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I + + I + LP KS+D+I D PY R +V + W+++
Sbjct: 7 LNRIYQRDCIEGMRMLPDKSIDMILCDLPYGT------TRNKWDIVIPLDSLWEQYE--- 57
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
RV+K NG + + + ++L + N + + +
Sbjct: 58 --------------RVVKDNGAIVLTAA----QPFTSLLVSSNPKLFRYDITWDKKQITG 99
Query: 140 F--RGRRFQNAHETLIWASPSP----------KAKGYTFNYDALKAANEDVQMRSDWLIP 187
F R HE ++ P + + +++
Sbjct: 100 FLNAKRMPLRKHEDILIFYKKPPTYNPQFTFGDSYEVRRKHSTSNYGSQNENETKSDGRR 159
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + + HPTQKP L ++ + T GDIILD GSGT+ A +L R+
Sbjct: 160 YPTSIIEIPQIREKGGHPTQKPVKLFEWLIKTFTNEGDIILDSCIGSGTTAVAATQLNRN 219
Query: 248 FIGIEMKQDYIDIATKRIA 266
FIG E++ +Y A +R+
Sbjct: 220 FIGFEIETEYAKRANQRLD 238
>gi|15616097|ref|NP_244402.1| hypothetical protein BH3535 [Bacillus halodurans C-125]
gi|10176159|dbj|BAB07254.1| BH3535 [Bacillus halodurans C-125]
Length = 449
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/289 (19%), Positives = 105/289 (36%), Gaps = 43/289 (14%)
Query: 20 KDKIIKGNS--ISVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++ G+S I +++L + D+IF DPPYN+ G + D
Sbjct: 173 RHFLLVGDSTKIEDVKRLMGNEKADMIFTDPPYNVDYEGAT---------GMKIKNDNME 223
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F +A +V K G ++V + Q+ F + ++W K++
Sbjct: 224 DSEFY-QFLFDAFVAMYQVTKEGGPIYVCHADSEGLTFRKAFQDSGFLLKQCLIWVKNSL 282
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC------- 189
+ + + HE +++ A + + V + +
Sbjct: 283 VLGRQDYHW--RHEPILYGWKPGAAHKWYGGRKQSTVIEDPVDLAITPKVDHVLLTFNNG 340
Query: 190 ---------------------SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ R+ HPT KP AL +R + +S+KPG+ +L
Sbjct: 341 ISSTVVKVPSYEIIHDGSDEGMTTWRIERPKRNADHPTMKPIALCARAIQNSSKPGERVL 400
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
DPF GSG++ ++ R +E Y ++ +R ++L
Sbjct: 401 DPFGGSGSTLIACEQTGRICHMMEYDPVYAEVIIRRWEEWTGQNAVKLE 449
>gi|332800339|ref|YP_004461838.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
sp. Re1]
gi|332698074|gb|AEE92531.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
Length = 463
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 54/268 (20%), Positives = 93/268 (34%), Gaps = 32/268 (11%)
Query: 21 DKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + L K +L DPPYN+ D D
Sbjct: 220 HRLLCGDSTKAKTYEKLLDGKKANLAVTDPPYNVNFTAGKENERLIKNDNQKDD------ 273
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F A + L G L+V + ++ + F + +W K + +
Sbjct: 274 --EFYEFLLAAFKNIYQALADGGALYVFHADTEGLNFRNAVKEVGFHLSGVCIWVKDSLV 331
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+Q HE +I+ + + D +S
Sbjct: 332 LG--RSDYQWQHEPIIYCWKPTGRHRWYADRKQTTVWQFDRPKKS--------------- 374
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K HPT KP AL + + +S+ P I+LDPF GS ++G ++L R IE+ + Y
Sbjct: 375 ----KEHPTMKPVALCAYPIQNSSAPNGIVLDPFSGSFSTGIACEQLDRICYAIELDEKY 430
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTE 285
+D KR + + K+
Sbjct: 431 VDAGVKRYVEYMGSDDEVFLIRDEKKIP 458
>gi|238025810|ref|YP_002910041.1| hypothetical protein bglu_1g01350 [Burkholderia glumae BGR1]
gi|237875004|gb|ACR27337.1| Hypothetical protein bglu_1g01350 [Burkholderia glumae BGR1]
Length = 258
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 60/255 (23%), Positives = 95/255 (37%), Gaps = 34/255 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ---------LNGQLYRPDHSLVDAVTDS 71
+++ + +++ + LP S+D++F DPPY Y VD
Sbjct: 19 NQLHQVDALELARSLPDHSIDMVFTDPPYASGGLHLSAKTRSVQAKYIQSGIAVDYENFE 78
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D A+ + AWL CRR +KP G L + + + ++Q VW
Sbjct: 79 GDNM-DQRAWAFWCHAWLSECRRAMKPGGLLACFIDWRQLATLTDVVQAAGLIFRGIAVW 137
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
K+ R F E L+WAS +S+ +P
Sbjct: 138 DKTPGRFRPRRGGFAQQAEFLVWASR-------------------GDMRQSEVYLPGVFS 178
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
K H T+KP L ++ ++ DPF GSGT A+ S+IG
Sbjct: 179 V----RLPLPKQHVTEKPLDLAREVVRLV-PADGVVFDPFAGSGTHLVAARDAGLSWIGA 233
Query: 252 EMKQDYIDIATKRIA 266
E + Y ++AT R+A
Sbjct: 234 ETNRRYHEVATARLA 248
>gi|83748867|ref|ZP_00945878.1| adenine DNA methyltransferase-like protein [Ralstonia solanacearum
UW551]
gi|207743921|ref|YP_002260313.1| n-6 adenine-specific dna methylase; protein [Ralstonia solanacearum
IPO1609]
gi|83724433|gb|EAP71600.1| adenine DNA methyltransferase-like protein [Ralstonia solanacearum
UW551]
gi|206595323|emb|CAQ62250.1| probable n-6 adenine-specific dna methylase; protein [Ralstonia
solanacearum IPO1609]
Length = 293
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 25/244 (10%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-----DKFSSFEAYDAFTR 86
L +P+ VDL+ DPPY + +G S + +W D +++ + Y + +
Sbjct: 24 LAAVPSNFVDLVLTDPPYGI-ADGAKLTKKGSKIVTTQQAWGSDFKDSWATIDQYYQWLK 82
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS-NPMPNFRGRRF 145
++ RV+K NG++ + I L+ + V+ K NP+P+ R +
Sbjct: 83 PFIAEFVRVMKDNGSMILFLDRKYTGLIAHYLERDFDLNFKNKVYFKKKNPVPSIRKNNY 142
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
++ T+ A K K YTFN+ A + G + + HP
Sbjct: 143 RS---TIEEAVWFTKGKEYTFNFGAQSDM--------LQVYEGPIGKK-------KTQHP 184
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T+K ++ ++ + +KPGD++LD F GS T+ VAK+ R IG E ++A RI
Sbjct: 185 TEKYTWMVEPLIRNHSKPGDVVLDAFAGSATTLVVAKQQDRHAIGFEKSTALYEMAKARI 244
Query: 266 ASVQ 269
+ Q
Sbjct: 245 EAEQ 248
>gi|237753134|ref|ZP_04583614.1| DNA methylase N-4/N-6 [Helicobacter winghamensis ATCC BAA-430]
gi|229375401|gb|EEO25492.1| DNA methylase N-4/N-6 [Helicobacter winghamensis ATCC BAA-430]
Length = 275
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/256 (26%), Positives = 101/256 (39%), Gaps = 23/256 (8%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ G+++ L+KL + SVD+ PPYN Q N + + + + DA +D D+ E Y
Sbjct: 1 MCGDALKELQKLQSNSVDIGVTSPPYNKQENKKGWLVKNVIYDATSDKLDE----EYYQK 56
Query: 84 FTRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQNLN-FWILNDIVWRKSNPMPNF 140
A L RV K G+ + + I + + W L + N
Sbjct: 57 SQIAVLDEVYRVTKEGGSFFYNHKIRWEKGRLIHPLEWIVKTQWNLRQEIIWDRGIAANI 116
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RG RF E + W + A + R+R +
Sbjct: 117 RGWRFWQVEERIYWLQKPKGKNLIGEELQSRHALLSSIW--------------RIRPESN 162
Query: 201 EKLHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HP P AL R + S ++LDP+ GSGTSG AK L FIGI+ Q+Y++
Sbjct: 163 N-AHPAPFPLALPLRCIFSILNEKSGVVLDPYCGSGTSGIAAKILNCEFIGIDNSQNYLE 221
Query: 260 IATKRIASVQPLGNIE 275
A RIA+ +
Sbjct: 222 FAKHRIANYRDYIQEA 237
>gi|160931951|ref|ZP_02079343.1| hypothetical protein CLOLEP_00784 [Clostridium leptum DSM 753]
gi|156868993|gb|EDO62365.1| hypothetical protein CLOLEP_00784 [Clostridium leptum DSM 753]
Length = 253
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/253 (19%), Positives = 85/253 (33%), Gaps = 32/253 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--QLYRPDHSLVDAVT------DSWDK 74
II G+++ V++ K+ D + DPPY + R ++ D
Sbjct: 11 IIHGDTLQVIKSFQPKTFDALITDPPYASGGWKPSEKNRTTSQKYSSMDPENALPDFDGD 70
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
++ + WL R+ KP + + + I LQ + +VW K
Sbjct: 71 NRDQRSWTRWMAEWLSDARKACKPGAPVCLFIDWRQYPSITDALQWAGWIWRGVVVWDKL 130
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
P + + + + S + G R
Sbjct: 131 TSRPQKGR---------------------FRQQSEYIVWGSNGPMPISRPV-GCLPGVYR 168
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
N ++H T+KP L+ I+ PG ILDPF G+GT+ + +GIE+
Sbjct: 169 YAN-PQNRIHVTEKPLPLMREIIKICV-PGGRILDPFCGAGTTVLASVMEGYEAVGIEVT 226
Query: 255 QDYIDIATKRIAS 267
Y + R+
Sbjct: 227 DAYYKLGVDRVRF 239
>gi|156740880|ref|YP_001431009.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156232208|gb|ABU56991.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 281
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 62/281 (22%), Positives = 105/281 (37%), Gaps = 56/281 (19%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++II + + L L +S+DL PPY D ++
Sbjct: 10 LNQIIHADCLQELAFLRDESIDLTLFSPPY-----------------------DGIRDYK 46
Query: 80 AYDAFTRAWL-LACRRVLKPNGTLWVIGSY--------HNIFRIGTMLQNLNFWILNDIV 130
+F + L RV K G V+ FR+ + W L + V
Sbjct: 47 KNWSFDFSMLGRQLYRVTKDGGVAIVVIGDGTKQFAKSLTSFRLAVNWVDEVGWKLFECV 106
Query: 131 WRKSNPMPNFRGRRFQN-AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ P + HE ++ + K + ++ + + + + S
Sbjct: 107 IYHRDGNPGAWWTQRFRVDHEYVLIFFKGERPKTFQKDHLMIPSKHAGK-IYSGTDRLTN 165
Query: 190 SGSERLRNK-------------------DGEKL---HPTQKPEALLSRILVSSTKPGDII 227
G +R+ K +G +L HP P+ L +++ ++PGDI+
Sbjct: 166 GGFKRITPKAVNPMKCRGTVWQYATSNTEGNRLKLLHPATFPDKLAEDLILCFSQPGDIV 225
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
LDP GSGT+ VA+ R +IGIE+ Q+Y +IA KRI
Sbjct: 226 LDPMCGSGTTCVVARNNNRKYIGIEISQEYCEIARKRIEKE 266
>gi|67921543|ref|ZP_00515061.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
gi|67856655|gb|EAM51896.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
Length = 319
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 110/333 (33%), Gaps = 75/333 (22%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KF 75
+ +KIIKG+ + +L++LP KS+DLI DPPY V WD ++
Sbjct: 1 MKHINKIIKGDCLEILQELPDKSIDLIVLDPPYW---------------KVVQQKWDYQW 45
Query: 76 SSFEAY----DAFTRAWLLACR-------------------------------------- 93
+ E Y + +
Sbjct: 46 RTEEDYQKWCLQWLTEIARVIKLSGSLYLFGYLRNLFYLYEPIIKLGFNFRQQIIIDKGI 105
Query: 94 -----RVLKPNGTL--------WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
R K + + I + + + ++ N
Sbjct: 106 KAIGGRATKNHKMFPNVTESLLFFIYDSRPFIENFLKQRQKELGLTALEINKRLGVKSNG 165
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
G ++ P+ + N ED+ + + + + +
Sbjct: 166 GGMWSLYTGNNILAQVPTREMWEKLENVLEFNYPYEDISSTFNIEMGLTDVWNDINFYEE 225
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
++LHPTQKP L+ RI+ +S+ I+LDPF GSG++ L R +IGIE + YI+
Sbjct: 226 KRLHPTQKPVKLIERIIRASSHKNMIVLDPFMGSGSTAIACLNLNRYYIGIEKEDKYIEK 285
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
RIA + K+ + +N L
Sbjct: 286 INSRIAQDKSNQ----ISREQKKQKTDNEYNQL 314
>gi|254188186|ref|ZP_04894698.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
gi|157935866|gb|EDO91536.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
Length = 258
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 95/259 (36%), Gaps = 32/259 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 13 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKT 72
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 73 VYTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 132
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 133 GVAVWDKTPGRTRPRRGGFAQQAEFVVWASRGA--------------------MRDCEVY 172
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A A++
Sbjct: 173 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGL 228
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IG E Y IA R+
Sbjct: 229 HWIGCETNAAYHAIALHRL 247
>gi|72537706|ref|YP_293736.1| DNA methylase [Burkholderia phage phi52237]
gi|72398396|gb|AAZ72631.1| DNA methylase [Burkholderia phage phi52237]
Length = 269
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 95/259 (36%), Gaps = 32/259 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 24 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKT 83
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 84 VYTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 143
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 144 GVAVWDKTPGRTRPRRGGFAQQAEFVVWASRGA--------------------MRDCEVY 183
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A A++
Sbjct: 184 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGL 239
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IG E Y IA R+
Sbjct: 240 HWIGCETNAAYHAIALHRL 258
>gi|331668083|ref|ZP_08368935.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
gi|331064597|gb|EGI36504.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
Length = 227
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVIARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFVAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+++ Q
Sbjct: 202 QQRLSAEQRAMQQ 214
>gi|253571032|ref|ZP_04848440.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251839981|gb|EES68064.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|313157076|gb|EFR56506.1| DNA (cytosine-5-)-methyltransferase [Alistipes sp. HGB5]
Length = 261
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 62/272 (22%), Positives = 96/272 (35%), Gaps = 41/272 (15%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + I + I ++ + SVD + AD PY + WD+
Sbjct: 1 MIEIDN-IYNMDCIEGMKLMANGSVDAVIADLPYGVLNRSNKAA-----------HWDRQ 48
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
EA W RR+ KP + + IF ML W N + +
Sbjct: 49 IPLEA------LW-KQYRRITKPGSPVILFA--QGIFSAQLMLSQPRMWRYNLVWRKDRV 99
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
R HE +I + N + ++D C G +L
Sbjct: 100 TGHLNANRMPLRQHEDIIVFYDRQPVYHPQMTPCPPERRNHGRR-KTDGFTNRCYGEMKL 158
Query: 196 R-------------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+K G HPTQKP AL+ ++ + T GD++LD GSGT
Sbjct: 159 APVRVAEDKYPTSVISIPKEHKTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSGT 218
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ A + R +IG E++ Y +I +RI
Sbjct: 219 TAIAAIRTGRHYIGFEIEPTYCEIVGRRIREE 250
>gi|330989854|gb|EGH87957.1| DNA methylase N-4/N-6 domain-containing protein [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 264
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/258 (22%), Positives = 88/258 (34%), Gaps = 36/258 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ KG+ + +++ +P SVD+I D PY + WD
Sbjct: 11 QLYKGDCLELMKSIPDASVDMILCDLPYGT----------------TQNKWDCPIDLS-- 52
Query: 82 DAFTRAWLLACRRVLKPNGTLWV--------IGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
R W R+ KP+ + + I I + + +K
Sbjct: 53 ----RLW-PEYWRICKPSAAIILTAQTPFDKILGASQIGHLKYEWIWEKTAATGFLNAKK 107
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
S + F T A + T A AN
Sbjct: 108 SPLKAHENVLVFYRKQPTYNPAMTAGHTIKRTNASYANHGANYGKSSSVRAPYESTERYP 167
Query: 194 RL-----RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
R ++ + HPTQKP AL+ ++ + T GDI+LD GSGT+G R F
Sbjct: 168 RSVQKLPKDNRLKNQHPTQKPVALMEYLIRTYTNEGDIVLDNCMGSGTTGVACIHSGRRF 227
Query: 249 IGIEMKQDYIDIATKRIA 266
IGIE + A+ RIA
Sbjct: 228 IGIERDEKIFGTASDRIA 245
>gi|332971258|gb|EGK10221.1| DNA (cytosine-5-)-methyltransferase [Desmospora sp. 8437]
Length = 228
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 29/250 (11%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
+ ++ LP++ +D + DPPY G+ R + + S + + F
Sbjct: 1 MEQMKNLPSEILDAVITDPPYCSGSRQESGKGQRNRMTTTKSSRWFGGDGLSTQGFLWFM 60
Query: 86 RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
R L R+LKP G + V + + + +++ +F + +VW K+ G F
Sbjct: 61 RQCALEWNRLLKPGGHVLVFIDWRMMPYLAAAIESADFRYNSLLVWDKTYFTM---GACF 117
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+N HE ++ S + + + +RN HP
Sbjct: 118 RNQHELILHFSK-------------------GKGVPQRRDVGNVLSQKPVRN----GQHP 154
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T+KP L+ R++ ++LD F GSGT+G + R ++ IE Y +++ +R+
Sbjct: 155 TEKPVDLIQRLISVVCPEHGLVLDSFAGSGTTGVACLRSGRHYVLIERDPYYAEVSKERL 214
Query: 266 ASVQPLGNIE 275
+ L ++
Sbjct: 215 RAETELEKVD 224
>gi|329848438|ref|ZP_08263466.1| modification methylase Cfr9I [Asticcacaulis biprosthecum C19]
gi|328843501|gb|EGF93070.1| modification methylase Cfr9I [Asticcacaulis biprosthecum C19]
Length = 359
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 68/356 (19%), Positives = 107/356 (30%), Gaps = 104/356 (29%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G VL P SVD + PPY + + V +S +A+ A
Sbjct: 15 YLGECRDVLRTFPDNSVDCCVSSPPYYQLRDYR-----------VAGQIGLEASPQAFIA 63
Query: 84 FTRAWLLACRRVLKPNGTLWV-IGSYHNI------------------------------- 111
RVLKP+GTLW+ IG +
Sbjct: 64 VLVEVFREVHRVLKPSGTLWINIGDSYASKPNGSIGATTLQGSRSSQSEYRRTNALRKTA 123
Query: 112 --------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+R+ LQ +++ DI+W K NPMP R +HE + S
Sbjct: 124 RPTGLKHKDLMGMPWRLAFALQEDGWYLRQDIIWNKLNPMPESVEDRCTKSHEYIFLLSK 183
Query: 158 SPKAK-----------GYTFNYDALKAANE-----------------------------D 177
S + T + N+ +
Sbjct: 184 SARYFFDQEAILEPCSPSTNPRFSQDIINQVGSARANGGTRATVPMKAVGRKFDPGAIRN 243
Query: 178 VQMRSDWLIPICSGSERLR-------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + ++R + + H P L+ +++ G I+LDP
Sbjct: 244 KSNENFDSHLVVPPTKRNKRSVWSIGTRGFSGAHFATYPVELIEPCILAGCPAGGIVLDP 303
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
F GSGT+ A K R + I++ +Y +A RI N T +P
Sbjct: 304 FGGSGTTAIAAHKHGRKAVYIDLNPEYFALARDRIDKETSQANFFDRTDTSAEAQP 359
>gi|326784381|ref|YP_004324665.1| DNA adenine methylase [Synechococcus phage S-SSM5]
gi|310003612|gb|ADO98008.1| DNA adenine methylase [Synechococcus phage S-SSM5]
Length = 285
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 65/291 (22%), Positives = 105/291 (36%), Gaps = 70/291 (24%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KD I+ G+ + K+ + V + PPY + + E
Sbjct: 7 KDTILYGDCRDTIPKI-HERVQMCVTSPPYYGLRDYG----------GQDKQIGLEQTPE 55
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNI-------------------------- 111
Y R VL +GTLWV SY+N
Sbjct: 56 KYIEELVNVFRKVRDVLSDDGTLWVNIGDSYYNYRPGKGQALVQQTVSNTKQDLPDNCPR 115
Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+ + L+ +++ DI+W K NPMP R +HE +
Sbjct: 116 RGNKLDGLKEKDLIGIPWMLAFALRADGWYLRQDIIWNKPNPMPESVRDRCTKSHEYIFL 175
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
S ++ Y F+ +A+K A + + ++ K + H P L+
Sbjct: 176 LSK---SQNYYFDVNAIKEATRRKRSVWN-----------VKTKPYKGSHCAVFPPELIE 221
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ + + IILDPF GSGT+ VAK+L R +IG E+ +Y ++ RI
Sbjct: 222 PCIKAGSDINHIILDPFIGSGTTAMVAKQLGRHYIGCELHPEYKNLINDRI 272
>gi|256026877|ref|ZP_05440711.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D11]
gi|289764870|ref|ZP_06524248.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D11]
gi|289716425|gb|EFD80437.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D11]
Length = 321
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 118/311 (37%), Gaps = 78/311 (25%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G+S+ +L+ L +S+D I PPY + ++ + E Y
Sbjct: 2 KIINGDSLKILKTLDTESIDCIITSPPYWQLRDYN-----------ISGQIGLEENIEEY 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSY-------------------HNIF---------- 112
+ RVLK +GT ++ NIF
Sbjct: 51 IEKLMLIMDELYRVLKKSGTFFLNIGDTYSNVNSKFSKRSNKKRGKENIFKVIPRKTNIQ 110
Query: 113 ---------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK- 162
R+ + + + + N+I+W K N +P RF N E + + + + K
Sbjct: 111 RKSKMMIPERLCIKMIDQGWILRNEIIWHKPNVLPESLNDRFTNDFEKIFFFTKNQKYYF 170
Query: 163 --GYTFNYDALKAANEDVQMRSDWLIPICSGSERLR------------NKDG-------- 200
Y + +D M + + +G + N++G
Sbjct: 171 KKQYEPYSEKTLNGFKDGVMPTGKKKMLEAGESKTAMKRIDKPWKTIYNENGRNMRTVWS 230
Query: 201 ------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
++ H PE L+ R L++ I+LDPF GSGT+ VAK L + +G+E+K
Sbjct: 231 IATKGIKEGHYASFPEELVKRCLLAGCPIDGIVLDPFLGSGTTLKVAKSLNLNGVGVELK 290
Query: 255 QDYIDIATKRI 265
++YI++A RI
Sbjct: 291 KEYIEMAVSRI 301
>gi|210617274|ref|ZP_03291500.1| hypothetical protein CLONEX_03722 [Clostridium nexile DSM 1787]
gi|210149378|gb|EEA80387.1| hypothetical protein CLONEX_03722 [Clostridium nexile DSM 1787]
Length = 270
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 52/262 (19%), Positives = 90/262 (34%), Gaps = 32/262 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTDSWD 73
+I+ G+++ +++ D + DPPY S +A+ D
Sbjct: 30 RILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMSAANALPDFDG 89
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL R+ K + + + I LQ + VW K
Sbjct: 90 DNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 149
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P +GR Q A + M + + G
Sbjct: 150 GNSRP-QKGRFRQQA---------------------EYIVWGSNGPMPINRPVSCLPGVF 187
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R N ++H T+KP L+ ++ +PG +ILDPF G+GT+ A +GIE+
Sbjct: 188 RYGN-PQNRIHVTEKPLQLMKDVIQIC-EPGGLILDPFAGAGTTVLAAVTTGYRAVGIEV 245
Query: 254 KQDYIDIATKRIASVQPLGNIE 275
Y + + R+ E
Sbjct: 246 TDAYYKLGSDRVKFALEAEENE 267
>gi|7960015|gb|AAF71177.1|AF158026_3 EcoVIII methyltransferase [Escherichia coli]
gi|1213327|gb|AAA91204.1| EcoVIII modification methylase [Escherichia coli]
Length = 304
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 54/297 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL--------------- 64
K+ + GNSIS+++KLP++ LI +D PY + ++S
Sbjct: 13 KNTVTNGNSISLIKKLPSQYAHLILSDIPYGIGAEDWDVLHNNSNNAYLGSSPAQKNAGA 72
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
++ +++ K Y + W RVLKP + + R
Sbjct: 73 IFKKRGKPINGWSEADKKI--PLEYQQWCEEWATEWFRVLKPGASAIIFAGRRFSHRCIC 130
Query: 117 MLQNLNFWILNDIVWRKSNPMPN--------------------FRGRRFQNAHET---LI 153
+++ F L DI+ P+ + G R N T ++
Sbjct: 131 AMEDAGF-NLRDIIAWMRVKAPHRAQRLSCVYERRGDTLNAEKWNGWRVGNLQPTFEPIL 189
Query: 154 WASPSPKAKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
W S K G + + A N+D + + + N+ G LHPTQKP
Sbjct: 190 WFSKPYKIGGTIADNAIIHGVGAYNQDAFVARNGKPENVITAGFSSNESG--LHPTQKPV 247
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
AL+ ++ +T+ G +++DPF GSG++ AK L R +IG E+ Y++ + KR+
Sbjct: 248 ALMKTLIELTTQKGQLVIDPFSGSGSTLVAAKDLGRDYIGFEINPTYVETSIKRLNK 304
>gi|324015250|gb|EGB84469.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
Length = 193
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 41/232 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ V D W + +S
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + ++ + R + F + +V+ K+ +
Sbjct: 57 ---------EMYRVLKKDALMVSFYGWNRVDRFMAAWKRAGFSVAGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A+ D L G
Sbjct: 105 SAYVAYRHECAYILAKGSPARPRNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIEL 193
>gi|317059623|ref|ZP_07924108.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
3_1_5R]
gi|317060406|ref|ZP_07924891.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D12]
gi|313685299|gb|EFS22134.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
3_1_5R]
gi|313686082|gb|EFS22917.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D12]
Length = 311
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 107/311 (34%), Gaps = 80/311 (25%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ G+ L+ + +S+D I PPY + V++ S E Y
Sbjct: 1 MHGDCSEYLKTIKTESIDCIVTSPPYWQLRDY-----------GVSNQIGMEESIEEYID 49
Query: 84 FTRAWLLACRRVLKPNGTLWVIGS--YHNIF----------------------------- 112
+ RVLK +GT ++ Y N+
Sbjct: 50 KLMNIMNELYRVLKKSGTFFLNLGDTYSNVNSKFYPANKMKDNKFSWIEGTVVSRKTNIL 109
Query: 113 ---------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
R+ + + + + N+I+W K N +P RF N E + + + S K
Sbjct: 110 RKSKMMIPERLSIRMIDSGWILRNEIIWHKPNALPESLTDRFTNDFEKIFFFTKSQKYYF 169
Query: 164 YTFNY----DALKAANEDVQMRSDWLI-------------------------PICSGSER 194
L + + + +
Sbjct: 170 QKQYEPYSEKTLHSFKDGIMPTGKKKMLSAGESKMAMKKIDKPWRAVYNEKGRNMRTVWS 229
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ NK + H PE L+ R L+S I+LDPF GSGT+ VAK L + IGIE+K
Sbjct: 230 IANKGLREGHYASFPEKLVERCLLSGCPQNGIVLDPFLGSGTTLKVAKNLNLNGIGIELK 289
Query: 255 QDYIDIATKRI 265
++YIDIA RI
Sbjct: 290 KEYIDIAVHRI 300
>gi|187251377|ref|YP_001875859.1| DNA modification methylase [Elusimicrobium minutum Pei191]
gi|186971537|gb|ACC98522.1| DNA modification methylase [Elusimicrobium minutum Pei191]
Length = 222
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 51/250 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + V++ + + VD I DPPY + + + +
Sbjct: 10 TLYLGDCLEVMQTI--ERVDAIITDPPY----DEKTHNGADKKFSDINF----------- 52
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A + L + +L + + + ++ + ++G + +W K MP
Sbjct: 53 -APLESPALLAKTLL--GKSRFWVLAFCSFEQLGQYRDGAGEAWIRAGIWDKITNMPQMT 109
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-----ERLR 196
G D E + + + + +G R
Sbjct: 110 G--------------------------DRPAQGGEGIAIMHNNGMKKWNGGGKAAIYRYL 143
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ G K HPTQKP L+ ++ T G ++LDPF GSGT+G +L R FIGIE+
Sbjct: 144 VERGNKQHPTQKPLELIEELISLYTNEGQLVLDPFMGSGTTGVACARLNRKFIGIEIDPK 203
Query: 257 YIDIATKRIA 266
Y DI+ RI
Sbjct: 204 YFDISCHRIE 213
>gi|254885078|ref|ZP_05257788.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
4_3_47FAA]
gi|254837871|gb|EET18180.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
4_3_47FAA]
Length = 267
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 62/272 (22%), Positives = 95/272 (34%), Gaps = 41/272 (15%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + I + I ++ + SV+ + AD PY + WD+
Sbjct: 1 MIEIDN-IYNMDCIEGMKLMADGSVNAVIADLPYGVLNRSNKAA-----------HWDRQ 48
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
EA W RR+ KP + + IF ML W N + +
Sbjct: 49 IPLEA------LW-EQYRRITKPGSPVILFA--QGIFSARLMLSQPRMWRYNLVWQKDRV 99
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
R HE +I + N + D C G +L
Sbjct: 100 TGHLNANRMPLRQHEDIIVFYDRQPVYHPQMTPCPPEQRNHRRRKM-DGFTNRCYGEMKL 158
Query: 196 R-------------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+K G HPTQKP AL+ ++ + T GD++LD GSGT
Sbjct: 159 APVRVADDKYPTSVISIPKEHKTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSGT 218
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ A + R +IG E++ Y +IA +RI
Sbjct: 219 TAIAAIRTGRHYIGFEIEPAYCEIAGRRIREE 250
>gi|13449148|ref|NP_085364.1| hypothetical protein pWR501_0210 [Shigella flexneri 5a]
gi|13310696|gb|AAK18520.1|AF348706_209 orf, hypothetical [Shigella flexneri 5a]
gi|12329114|emb|CAC05845.1| unnamed protein product [Shigella flexneri]
Length = 227
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+L PF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLGPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 202 QQRLAAVQRAMQQ 214
>gi|227874998|ref|ZP_03993147.1| adenine-specific DNA-modification methylase [Mobiluncus mulieris
ATCC 35243]
gi|227844447|gb|EEJ54607.1| adenine-specific DNA-modification methylase [Mobiluncus mulieris
ATCC 35243]
Length = 354
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 12/222 (5%)
Query: 51 LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ GQ Y+ V + D F Y F L RVLKP+GTL++ Y
Sbjct: 126 VGFKGQSYKTIRGQVTSYNDE------FADYWGFLAPRLEEAWRVLKPSGTLYLHLDYRE 179
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------ 164
+ +L L + RR+ H+ ++ PK +
Sbjct: 180 VHYAKVLLDALFGRECFLNEIIWAYDYGARTKRRWPAKHDNILVYVKDPKQYYFDSESVD 239
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
Y A + R + + + + TQKPE +L RI+ +S++PG
Sbjct: 240 REPYMAPGLVTAEKAARGKLPTDVWWHTIVSPTGKEKTGYATQKPEGILRRIVAASSRPG 299
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
D +LD F GSGT+GAVA K+ R F+ ++ I + R A
Sbjct: 300 DWVLDFFAGSGTTGAVAGKMGRHFVLVDENPQAIAVMRARFA 341
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
++ +I G+++ VL L ++ LI+ DPP+N
Sbjct: 33 ENTVIHGDNLPVLRGLADETFQLIYVDPPFNTGK 66
>gi|257468542|ref|ZP_05632636.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
ulcerans ATCC 49185]
gi|317062801|ref|ZP_07927286.1| DNA modification methylase M.SthI [Fusobacterium ulcerans ATCC
49185]
gi|313688477|gb|EFS25312.1| DNA modification methylase M.SthI [Fusobacterium ulcerans ATCC
49185]
Length = 312
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 73/310 (23%), Positives = 104/310 (33%), Gaps = 77/310 (24%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI+ GNS+ VL+ L +S+D + PPY + V+ S +
Sbjct: 3 KIMHGNSLEVLKTLEDESIDCVVTSPPYWQIRDY-----------GVSGQIGLESDVNEF 51
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIF--------------------------- 112
RVLK GTL+V Y N+
Sbjct: 52 LEKLMDIFDEVNRVLKKTGTLFVNMGDTYSNVNAKLAGGTNNKRHGKNNGYKTVPRKTNI 111
Query: 113 ----------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
R+ + + + N+I+W+K N +P RF N E + + S K
Sbjct: 112 KRKSKMMIPERLAIKMIESGWILRNEIIWQKPNILPESVNDRFTNDFEKVFFFSKEQKYY 171
Query: 163 GYTF----------------NYDALKAANEDVQMRSDWLIPIC-----------SGSERL 195
D K N +
Sbjct: 172 FKKQYEPYSNKTLTGFGNGIMPDNTKRLNPGESKAGMREGREWKAVYNENGRNMRTVWNI 231
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
K ++ H PE L+ R L S ++LDPF GSGT+ VAK L IGIE+K+
Sbjct: 232 ATKGIKEGHFAIFPEELVRRCLDSGCPENGMVLDPFLGSGTTLKVAKSLNMHGIGIELKR 291
Query: 256 DYIDIATKRI 265
+YIDIA RI
Sbjct: 292 EYIDIAVGRI 301
>gi|307151673|ref|YP_003887057.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306981901|gb|ADN13782.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
Length = 285
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 27/254 (10%)
Query: 22 KIIKGNS-ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ +G+S + L + +DLI PPYN+ +N + S++
Sbjct: 39 TLYQGDSTLENL--FDEEFIDLIVTSPPYNVGINYNSNNDE--------------LSYQD 82
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLNFWILNDIVWR 132
Y F+ W+ C R K + G+ + T+ Q + + + IVW
Sbjct: 83 YLDFSHQWMSNCYRWSKTQARFVLNIPLDKNKGGNRSVGADLTTIAQQVGWKYQSTIVWN 142
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
+ N + +A + A Y + + ++ + + +G
Sbjct: 143 EGNISRRTAWGSWLSASAPFVIAPVELIVVFYKEQWKKTNGTKQ-SDLKKEEFMEWTNGL 201
Query: 193 ERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ +++ HP P L R + + D++ DPF GS T+ A + +R IG+
Sbjct: 202 WTFNGESKKRIGHPAPFPRELPHRCIKLFSYVDDLVFDPFCGSATTLLEAYRNKRRGIGV 261
Query: 252 EMKQDYIDIATKRI 265
E+ DY +IA +R+
Sbjct: 262 ELDLDYCEIAKRRL 275
>gi|237750705|ref|ZP_04581185.1| adenine specific DNA methyltransferase [Helicobacter bilis ATCC
43879]
gi|229373795|gb|EEO24186.1| adenine specific DNA methyltransferase [Helicobacter bilis ATCC
43879]
Length = 270
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 99/265 (37%), Gaps = 31/265 (11%)
Query: 13 QNSIFEWKDK-IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
N+ F +K+ + + + L S+DLI PPYN+ + +
Sbjct: 6 HNTSFSYKNTTLFNHTCLD--KTILQENSLDLIITSPPYNVGIEYNSNEDSN-------- 55
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--------GSYHNIFRIGTMLQNLN 122
S+E+Y F++ W+ C K + GS + T+ + +
Sbjct: 56 ------SYESYLEFSQKWIENCYFWAKDGARFCLNIPLDKNKGGSQSVGADLTTLAKQIG 109
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--VQM 180
+ + I+W + N + +A + A Y + D +
Sbjct: 110 WKYHSTIIWNEGNISRRTAWGSWLSASAPYVIAPVELILVLYKGAWKKKYKGESDISKEE 169
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
W + S + + + G HP P L R + + GD++ DPF GSGT+
Sbjct: 170 FMAWTNGLWSFNGESKKRIG---HPAPFPRELPKRCIKLFSYVGDVVFDPFCGSGTTMIE 226
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
+ R FIGIE+ + Y +++ KR
Sbjct: 227 SYLNNRQFIGIELDKAYCELSKKRF 251
>gi|149924541|ref|ZP_01912899.1| Site-specific DNA-methyltransferase (adenine-specific)
[Plesiocystis pacifica SIR-1]
gi|149814594|gb|EDM74176.1| Site-specific DNA-methyltransferase (adenine-specific)
[Plesiocystis pacifica SIR-1]
Length = 569
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 57/280 (20%), Positives = 98/280 (35%), Gaps = 41/280 (14%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------VTD 70
+I G+++ LE L S DLI+ DPP+ L R S + D
Sbjct: 57 LILGDNLLALEALARDRPGSADLIYIDPPFATGSRFSLIRRVGSKREGDEAELRLPAFDD 116
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY---HNIFRIGTMLQNLNFWILN 127
+W+ L R+L P G+L+V H + + + +
Sbjct: 117 AWEGG--PAGLLRMLDPRLRLLHRLLAPTGSLYVHVDPTVGHAVKLLLDEIFGPECFQRE 174
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ + R + H+ + + + +TFN + +
Sbjct: 175 IVWRIGWLSGFKTKARNWIRNHDLIFFYVK--DPRAFTFNKRYVPHPPGYKRRDGKPSKA 232
Query: 188 ICSGSERLRNKD----------------------GEKLHPTQKPEALLSRILVSSTKPGD 225
E + N + + TQK E+LL RI+ +S+ PGD
Sbjct: 233 PGVAIEDVWNANAVEAELSGRESLDSIQIKSFSKEKTGWATQKNESLLRRIIEASSNPGD 292
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++D F GSGT+ VA +L R F + + + I R+
Sbjct: 293 RVVDVFAGSGTAAVVAAELGRRFWACDRAEAAVQIGRGRL 332
>gi|167619961|ref|ZP_02388592.1| site-specific DNA methyltransferase [Burkholderia thailandensis
Bt4]
Length = 280
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 61/268 (22%), Positives = 101/268 (37%), Gaps = 34/268 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLV 65
+ D++ +++++ LP S+D++F DPPY+ + Y +
Sbjct: 36 DLSPLLDRLHATDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSEKYINSDTKA 95
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
V D A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 96 AYVDFESDNM-DQRAWAFWCHAWLTECRRALKPGGLLVCFIDWRQLPTLTDVVQAAGLIL 154
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
VW K+ R F E ++WAS MR +
Sbjct: 155 RGVAVWDKTPGRTRPRRGGFAQQAEFVVWASRGA--------------------MRDCEV 194
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
RL K H T+KP + ++ G ++ D F GSGT A A++
Sbjct: 195 YLPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAG 250
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGN 273
+IG E Y IA +R+A++ +
Sbjct: 251 LHWIGCETNAAYHAIAAERLAAMNAVEQ 278
>gi|315576665|gb|EFU88856.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
Length = 398
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 32/248 (12%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S + V + + K DL+ DPPYN+ G+ +A+T D
Sbjct: 157 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKGK-------EALTIKNDSKE 209
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + +F A +K + +V + + T L+ F + +++W K++
Sbjct: 210 TN-EFHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 268
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + HE ++ S + + + N D
Sbjct: 269 V--LSRQDYHWKHEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 311
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL + +S+K GD ILD F GSGT+ ++ R +E+
Sbjct: 312 ----NKEHPTMKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 367
Query: 257 YIDIATKR 264
Y+D+ R
Sbjct: 368 YVDVIIAR 375
>gi|29376623|ref|NP_815777.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
gi|307276047|ref|ZP_07557180.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2134]
gi|29344087|gb|AAO81847.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
gi|306507377|gb|EFM76514.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2134]
gi|315575105|gb|EFU87296.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309B]
gi|315582532|gb|EFU94723.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309A]
Length = 400
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 32/248 (12%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S + V + + K DL+ DPPYN+ G+ +A+T D
Sbjct: 159 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKGK-------EALTIKNDSKE 211
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + +F A +K + +V + + T L+ F + +++W K++
Sbjct: 212 TN-EFHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 270
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + HE ++ S + + + N D
Sbjct: 271 V--LSRQDYHWKHEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 313
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL + +S+K GD ILD F GSGT+ ++ R +E+
Sbjct: 314 ----NKEHPTMKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 369
Query: 257 YIDIATKR 264
Y+D+ R
Sbjct: 370 YVDVIIAR 377
>gi|291166224|gb|EFE28270.1| DNA (cytosine-5-)-methyltransferase [Filifactor alocis ATCC 35896]
Length = 341
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 64/347 (18%), Positives = 110/347 (31%), Gaps = 85/347 (24%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
E+ + + + + I+ G+++ L K P + ++ PPY + +
Sbjct: 6 EHTSFLDSYINTILCGDALETLRKFPDEIINTCITSPPYYGLRDYHKK-----------E 54
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------------------- 110
+ + E Y A RRVLK GT +++
Sbjct: 55 QIGREKTVEEYLDRLVAVFREVRRVLKSGGTCFIVIGDSYAGSGGGKGQYMDPKYPKKRN 114
Query: 111 ---------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
+R+ +L+ +++ +DI+W K N MP R ++
Sbjct: 115 GQNPSITQKVLGYKAKDLMGIPWRLALLLREDGWYLRSDIIWHKENAMPEACRDRPTRSY 174
Query: 150 ETLIWASPSPKAKGYTFNY-----------------DALKAANEDVQM------------ 180
E + S SP+ + K ED +
Sbjct: 175 EHVFLLSKSPRYYYDYEQMAEPMKEVSKKRYVRGRSEDNKYLKEDAGISVQKINKARKYG 234
Query: 181 ----RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + H P L +++ IILDPF GSGT
Sbjct: 235 QYKGDNIPQFRNKRDIWTINTVSFRGNHYAVFPPKLAEICMIAGCPKDGIILDPFIGSGT 294
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
G VA R +IGIE+ ++Y +A KRI+ + E K
Sbjct: 295 VGFVALMQDRKYIGIELNEEYCKLARKRISEEVEKIDKEKEYEVCKE 341
>gi|154151876|ref|YP_001405494.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Methanoregula boonei 6A8]
gi|154000428|gb|ABS56851.1| DNA methylase N-4/N-6 domain protein [Methanoregula boonei 6A8]
Length = 334
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 52/271 (19%), Positives = 87/271 (32%), Gaps = 33/271 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ K++ G++ L + +SV LI PPY +E
Sbjct: 51 EHKLVLGDARD-LSSIDDESVHLIVTSPPYWSLKKYHES----------DGQLGNIQDYE 99
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
A+ C R+L G L V+ + R + + I + N
Sbjct: 100 AFLPELDKVWAECYRILAKGGRLIVVVGDVCLSRKEAGRHLVMPLHASIIESCRRIGFDN 159
Query: 140 FR---GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL- 195
+ NA + K + N + R +RL
Sbjct: 160 LSPIIWHKIANATFEVSNGGGGILGKPFEPNGVIKNDIEFILMQRKPGAYRKPDTEKRLL 219
Query: 196 ----------------RNKDG--EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ G + HP P L +R++ + GD +LDPF G+GT+
Sbjct: 220 STISQENHKLWFRQIWTDIPGASTQDHPAPYPVELSTRLIRMFSFVGDTVLDPFVGTGTT 279
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
A R+ IGIE+ Y++ A +R+
Sbjct: 280 MLSAAATGRNSIGIEIDPRYLEYAYQRLRKQ 310
>gi|163733749|ref|ZP_02141191.1| probable DNA-methyltransferase protein (hemagglutinin-associated
protein) [Roseobacter litoralis Och 149]
gi|161392860|gb|EDQ17187.1| probable DNA-methyltransferase protein (hemagglutinin-associated
protein) [Roseobacter litoralis Och 149]
Length = 226
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/261 (20%), Positives = 95/261 (36%), Gaps = 41/261 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++II G++ +VL+ + SVDL+ DPPY + D + +
Sbjct: 4 NQIINGDAAAVLKTIEEGSVDLVITDPPY---------------LVNYKDRQGRSLQNDN 48
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
R +K + + + + + I+++IVW K
Sbjct: 49 NLGGVLPVFEPMARAMKQSSYAICFSGWSALPQFTQAWEAAGLKIVSEIVWSKKY---TS 105
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
R Q HE+ + AK M S G
Sbjct: 106 RRGFTQYRHESAYVLAKGNPAKPA-------------RPMSSVQGWVY----------SG 142
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HPT+K +L+ ++ +KPGD++ DPF GS ++ A R ++GIE+++ + +
Sbjct: 143 NKRHPTEKAVEILAPLVRCFSKPGDLVCDPFSGSDSTSVAAVLNGRDYLGIELEKAHCET 202
Query: 261 ATKRIASVQPLGNIELTVLTG 281
A R+ + + T
Sbjct: 203 ARARLTEARRYRAEQATQYQK 223
>gi|53717799|ref|YP_106785.1| phage-encoded modification methylase [Burkholderia pseudomallei
K96243]
gi|52208213|emb|CAH34144.1| phage-encoded modification methylase [Burkholderia pseudomallei
K96243]
Length = 252
Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats.
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 32/261 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 13 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKT 72
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 73 VYTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 132
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 133 GVAVWDKTPGRTRPRRGGFAQQAEFVVWASRG--------------------VMRDCEVY 172
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A+++
Sbjct: 173 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLVAAREVGL 228
Query: 247 SFIGIEMKQDYIDIATKRIAS 267
+IG E Q Y +A R+
Sbjct: 229 HWIGSETNQTYRSLACNRLMQ 249
>gi|312114244|ref|YP_004011840.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
17100]
gi|311219373|gb|ADP70741.1| DNA methylase N-4/N-6 domain protein [Rhodomicrobium vannielii ATCC
17100]
Length = 271
Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats.
Identities = 54/256 (21%), Positives = 85/256 (33%), Gaps = 32/256 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN---------GQLYRPDHSLVDAVTDS 71
+ + L +L D + DPPY+ + + YR +
Sbjct: 34 HTLYNADCRLALPEL--NGFDAVITDPPYSSGGSTQAARNQAPSKKYRFTGTKKTDPDFG 91
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D + W+ C R + G L + N+ I Q + + W
Sbjct: 92 GDNRDQRSLTL-WCSDWMAECLRATRQGGALMCFIDWRNLPAIIDACQVGGWVYRGIVPW 150
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
K+ +G + + A T + A +G
Sbjct: 151 DKTEAARPNKGWFRTQ-----VEYIVTATAGPITRDASAPG--------------IYQTG 191
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
R +K H T KP L+ +L + + +LDPF GSGT+G K+ R F GI
Sbjct: 192 YIRTPVIAKDKHHITGKPVTLMQELLRTRDDWQN-VLDPFMGSGTTGVACVKMGRVFTGI 250
Query: 252 EMKQDYIDIATKRIAS 267
E + Y DIA +RI
Sbjct: 251 EFEPRYFDIACRRIED 266
>gi|315029926|gb|EFT41858.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4000]
Length = 422
Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 103/255 (40%), Gaps = 13/255 (5%)
Query: 23 IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G++ V + L K +L+ DPPYN+ + + S + + + S E
Sbjct: 175 LLCGDATKPSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMND---DMSDE 231
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+D F + ++ + ++V + ++ + +W K+N
Sbjct: 232 EFDQFLMSVFQNYSHAMRDDSAIYVFHGSSYQREFENSMNAAGIFVRSQCIWVKNNATFG 291
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ +++ HE + +A +A + + +D+ I R+
Sbjct: 292 WS--QYRWQHEPVFYAHKKKQAPAWYGDRKQTTVWQDDLVEDLPATIWKVP-----RDDV 344
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQKP +L++ + +S+K DI+LD F GSG++ ++L R +E+ + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404
Query: 260 IATKRIASVQPLGNI 274
+ +R +
Sbjct: 405 VIIERFEKSTGIIAE 419
>gi|307288953|ref|ZP_07568923.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0109]
gi|306500096|gb|EFM69443.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0109]
Length = 260
Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats.
Identities = 54/283 (19%), Positives = 96/283 (33%), Gaps = 51/283 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + + ++++ KS+D+I D PY + WD F+
Sbjct: 3 LNKIYNEDCLEGMKRISDKSIDMILCDLPYGT----------------TDNKWDVIIPFD 46
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
R++K +G + + GS F ++ N + I +
Sbjct: 47 -------KLWEQYERIIKDSGAIVLTGS--QPFTTDIIMSNRKLFRYEWIWNKNQASNFF 97
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA-------------ANEDVQMRSDWLI 186
+ HE ++ + A D S +
Sbjct: 98 MANKMPLKVHENILVFYKKLPTYNKQMIPRTNPSVAIAQERGYVYDGAKSDNYNISTVKM 157
Query: 187 PICSGSERLRN-------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ +N + HPTQKP AL ++ + T G+I+LD G
Sbjct: 158 SPKGYDKNWKNPISILNINQLKNNSNERCGHPTQKPVALFEHLIKTYTNEGEIVLDNCIG 217
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
SGT+ A R FIG E +++Y D+A +RI + ++
Sbjct: 218 SGTTAVAAINTNRQFIGFEKEKEYFDVAIERIKKASEEDDSKV 260
>gi|153854020|ref|ZP_01995353.1| hypothetical protein DORLON_01344 [Dorea longicatena DSM 13814]
gi|149753402|gb|EDM63333.1| hypothetical protein DORLON_01344 [Dorea longicatena DSM 13814]
Length = 270
Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats.
Identities = 52/262 (19%), Positives = 90/262 (34%), Gaps = 32/262 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTDSWD 73
+I+ G+++ +++ D + DPPY S +A+ D
Sbjct: 30 RILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMSAANALPDFDG 89
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL R+ K + + + I LQ + VW K
Sbjct: 90 DNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 149
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P +GR Q A + M + + G
Sbjct: 150 GNSRP-QKGRFRQQA---------------------EYIVWGSNGPMPINRPVSCLPGVF 187
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R N ++H T+KP L+ ++ +PG +ILDPF G+GT+ A +GIE+
Sbjct: 188 RYGN-PQNRIHVTEKPLQLMKDVIQIC-EPGGLILDPFAGAGTTVLAAVMTGYRAVGIEV 245
Query: 254 KQDYIDIATKRIASVQPLGNIE 275
Y + + R+ E
Sbjct: 246 TDAYYKLGSDRVRIALEAEQKE 267
>gi|255975407|ref|ZP_05425993.1| transferase [Enterococcus faecalis T2]
gi|255968279|gb|EET98901.1| transferase [Enterococcus faecalis T2]
Length = 400
Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 32/248 (12%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S + V + + K DL+ DPPYN+ G+ +A+T D
Sbjct: 159 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKGK-------EALTIKNDSKE 211
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + +F A +K + +V + + T L+ F + +++W K++
Sbjct: 212 TN-EFHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 270
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + HE ++ S + + + N D
Sbjct: 271 V--LSRQDYHWKHEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 313
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL + +S+K GD ILD F GSGT+ ++ R +E+
Sbjct: 314 ----NKEHPTMKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 369
Query: 257 YIDIATKR 264
Y+D+ R
Sbjct: 370 YVDVIIAR 377
>gi|257090388|ref|ZP_05584749.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|256999200|gb|EEU85720.1| conserved hypothetical protein [Enterococcus faecalis CH188]
Length = 398
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 32/248 (12%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S + V + + K DL+ DPPYN+ G+ +A+T D
Sbjct: 157 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKGK-------EALTIKNDSKE 209
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + +F A +K + +V + + T L+ F + +++W K++
Sbjct: 210 TN-EFHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 268
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + HE ++ S + + + N D
Sbjct: 269 V--LSRQDYHWKHEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 311
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL + +S+K GD ILD F GSGT+ ++ R +E+
Sbjct: 312 ----NKEHPTMKPVALFDYQIKNSSKRGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 367
Query: 257 YIDIATKR 264
Y+D+ R
Sbjct: 368 YVDVIIAR 375
>gi|270308833|ref|YP_003330891.1| adenine-specific DNA-methyltransferase-like protein
[Dehalococcoides sp. VS]
gi|270154725|gb|ACZ62563.1| adenine-specific DNA-methyltransferase-like protein
[Dehalococcoides sp. VS]
Length = 312
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 45/274 (16%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +KI S + LP SV L+ PPYN+ DK S
Sbjct: 57 DKLNKIWCK-SSENMNDLPDNSVHLMVTSPPYNVGKEY-----------------DKDLS 98
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM---------LQNLNFWILND 128
Y + R RVL P G + + NI R + ++ F + +
Sbjct: 99 LTEYRSLLRNVFSEVYRVLVPGGRACINIA--NIGRKPYLPLHSYIISDCLDIGFLMRGE 156
Query: 129 IVWRK--SNPMPNFRGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
I+W K S+ G + HE ++ + + T ++ + + +E
Sbjct: 157 IIWNKASSSGTSCAWGSWKSPSNPSLRDTHEYILVFCKNSYTRKATKSHISTISRDE--- 213
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+E + + HP P L R++ T DI+LDPF GSG +
Sbjct: 214 FLEYTKSVWTFPTESAK----KVGHPAPFPVELPYRLIQLYTYEHDIVLDPFSGSGATCI 269
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
A K R +I ++ + Y+ ++ KRI N
Sbjct: 270 AALKTNRYYISYDIDESYVKLSEKRILEHNYNQN 303
>gi|307565394|ref|ZP_07627883.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
gi|307345844|gb|EFN91192.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
Length = 441
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/266 (19%), Positives = 98/266 (36%), Gaps = 36/266 (13%)
Query: 21 DKIIKGNSIS----VLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
++++ G+ S V+ L V D+I DPPYN+ G D++ +
Sbjct: 192 NRLMCGDCRSKKDIVM--LMNGQVADMILTDPPYNVNYEGGGDSKLTIQNDSMEND---- 245
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ F ++ ++K G+ +V + ++ F I VW K +
Sbjct: 246 ----LFLRFLQSVFNVMFSIVKAGGSFYVFHADSEGENFRRAIREAGFKIAQCCVWVKDS 301
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + Y + A N D + + W
Sbjct: 302 LVMGR------------QDYQWQHEPCLYGWKPGAAHFWNSDRKQTTIWNFDKP------ 343
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++HPT KP AL++ + +S K GDI++D F GSG++ ++ R G+E+
Sbjct: 344 ---KANRIHPTMKPIALMAYPITNSAKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDP 400
Query: 256 DYIDIATKRIASVQPLGNIELTVLTG 281
Y+ +R ++ P + L
Sbjct: 401 KYVSATVRRYMAMFPQQPVLLERDGN 426
>gi|308067601|ref|YP_003869206.1| hypothetical protein PPE_00818 [Paenibacillus polymyxa E681]
gi|305856880|gb|ADM68668.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 421
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 55/252 (21%), Positives = 88/252 (34%), Gaps = 32/252 (12%)
Query: 20 KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + L LI DPPYN+ G+ DA+ DK
Sbjct: 165 KHRLICGDSTNQQDIATLMDGKKAQLIVTDPPYNVDYTGKTK-------DALKIENDKMD 217
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + YD F A V +++V + F + +W K
Sbjct: 218 NNQFYD-FLLAAYTRMYEVADDGASIYVFHADSEGLNFRKSFIEAGFKLSQCCIWAKQAM 276
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + Y + N D + + W +E
Sbjct: 277 VMGHA------------DYHWMHEPVLYGWKPTGGHYWNSDRKQTTLWQFDRPFRNE--- 321
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP L+S + +S+K GDI+ DPF GSG++ ++ R E+
Sbjct: 322 ------YHPTMKPIPLISYPIKNSSKLGDIVFDPFGGSGSTLIACEETDRLCYTSELDPK 375
Query: 257 YIDIATKRIASV 268
Y+D+ R S
Sbjct: 376 YVDVIVSRYISH 387
>gi|83648327|ref|YP_436762.1| DNA modification methylase [Hahella chejuensis KCTC 2396]
gi|83636370|gb|ABC32337.1| DNA modification methylase [Hahella chejuensis KCTC 2396]
Length = 405
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/279 (20%), Positives = 99/279 (35%), Gaps = 45/279 (16%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV---------DLIFADPPYNL 51
+ ++ I+++ + + +++ G++ LP D++F DPPYN+
Sbjct: 139 VPEEEEAVISQSGDVWLCGEHRVLCGDA-----TLPDAYAALFSDGKLADMVFTDPPYNV 193
Query: 52 QLNGQLYRPDHSLVDAV--TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
A+ + D F F A L CR G +++ S
Sbjct: 194 NYANSAKDKLRGKNRAILNDNLGDGFYDFL--LAALSPTLAHCR------GAIYIAMSSS 245
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + + I+W K+ + Y +
Sbjct: 246 ELDTLQAAFREAGGKWSTFIIWAKNTFTLGRS------------DYQRQYEPILYGWPEG 293
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
A + D W ++ LHPT KP L+ R + +S++PGD +LD
Sbjct: 294 ARRHWCGDRDQGDVWQ---------IKKPAKNDLHPTMKPVELVERAIRNSSRPGDRVLD 344
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PF GSGT+ A+K R IE+ Y+D+ +R
Sbjct: 345 PFGGSGTTLIAAEKSGRVARLIELDPKYVDVIVRRWQEW 383
>gi|327198531|ref|YP_004327118.1| adenine-specific DNA methyltransferase [Pseudoalteromonas phage
H105/1]
gi|304367926|gb|ADM26685.1| adenine-specific DNA methyltransferase [Pseudoalteromonas phage
H105/1]
Length = 228
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 96/245 (39%), Gaps = 21/245 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++G+ + ++++ + SVDL+ DPPY+++ + + V + D+ +
Sbjct: 4 LMRGDCLERMKEIESGSVDLVLVDPPYDIKNTKAGGKSKLAKSMQVMN--DQIREANIVN 61
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F L RV K + + +
Sbjct: 62 GFDELILDELVRVNKNINMYIFCNKAQLPMYMKYFVMERGCSF-------------DLIK 108
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
NA T Y F N + + L + + +
Sbjct: 109 WVKTNAMPTYNN--KYLSDTEYCFYARKRGYCNPENYSDASTLYSAPINIKDKKKFN--- 163
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT KP LL R++ +S+K GD ILD F GSG++G AK L R+FIGIE+ ++Y +IA
Sbjct: 164 -HPTIKPIPLLERLIRNSSKEGDNILDCFMGSGSTGVAAKNLNRNFIGIELDENYFNIAK 222
Query: 263 KRIAS 267
+RI
Sbjct: 223 ERIEK 227
>gi|291521452|emb|CBK79745.1| DNA modification methylase [Coprococcus catus GD/7]
Length = 267
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/262 (19%), Positives = 90/262 (34%), Gaps = 32/262 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTDSWD 73
+I+ G+++ +++ D + DPPY S +A+ D
Sbjct: 27 RILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMSAANALPDFDG 86
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL R+ K + + + I LQ + VW K
Sbjct: 87 DNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P +GR Q A + M + + G
Sbjct: 147 GNSRP-QKGRFRQQA---------------------EYIVWGSNGPMPINRPVSCLPGVF 184
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R N ++H T+KP L+ ++ +PG +ILDPF G+GT+ A +GIE+
Sbjct: 185 RYGN-PQNRIHVTEKPLQLMKDVIQIC-EPGGLILDPFAGAGTTVLAAVVTGYRAVGIEV 242
Query: 254 KQDYIDIATKRIASVQPLGNIE 275
Y + + R+ E
Sbjct: 243 TDAYYKLGSDRVRIALEAEQKE 264
>gi|210614073|ref|ZP_03290029.1| hypothetical protein CLONEX_02242 [Clostridium nexile DSM 1787]
gi|210150851|gb|EEA81859.1| hypothetical protein CLONEX_02242 [Clostridium nexile DSM 1787]
Length = 268
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/260 (20%), Positives = 97/260 (37%), Gaps = 36/260 (13%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAV------ 68
W +I+ G+++ +++ + D + DPPY + R + ++
Sbjct: 27 DNW--RILHGDTLKLVKAFQPGTFDAVITDPPYASGGTKQNERNRTTNQKYSSMSPEKAL 84
Query: 69 -TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
D+ ++ + WL R+ K + + + + LQ +
Sbjct: 85 PDFDGDQ-KDQRSWTHWMAEWLYDVRKACKSGAPICLFIDWRQYPSMTDALQWAGWIWRG 143
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
VW K+N P RF+ E +IW S + M +
Sbjct: 144 TAVWDKTNSRPQ--KGRFRQQTEFIIWGS--------------------NGPMPISRPVS 181
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
G R N ++H T+KP L+ ++ +PG ILDPF G+GT+ A +
Sbjct: 182 CLPGVFRYGN-PQNRVHVTEKPLQLMKDVVQIC-EPGGRILDPFAGAGTTILAAAQQGYQ 239
Query: 248 FIGIEMKQDYIDIATKRIAS 267
+GIE+ Y + T+R+
Sbjct: 240 AVGIEVTDAYFQLGTERVRE 259
>gi|61806250|ref|YP_214609.1| DNA adenine methylase [Prochlorococcus phage P-SSM4]
gi|61563794|gb|AAX46849.1| DNA adenine methylase [Prochlorococcus phage P-SSM4]
Length = 326
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/310 (21%), Positives = 112/310 (36%), Gaps = 75/310 (24%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++KI+ G+ L++ + PPY N + + + E
Sbjct: 10 RNKILYGDCRDTLKQF-DEQARTCVTSPPYYGLRNYGNE----------ENQIGQEKTPE 58
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNI-------------------------- 111
+ R VL +GTLWV SY+N
Sbjct: 59 EFIDQLVNVFKEVRNVLTDDGTLWVNLGDSYYNYRPGKGQSYPKQSVSKTNQDLPTQCNK 118
Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+ +++ +++ DI+W K NPMP R +HE +
Sbjct: 119 RGNKLDGLKEKDLIGIPWMFAFAMRSDGWYLRQDIIWHKPNPMPESVKDRCTKSHEYIFL 178
Query: 155 ASPSPKAK-------------GYTFNYDALKAANED--VQMRSDWLIPICSGSER----L 195
S + K T N K N + S ++R +
Sbjct: 179 LSKNKKYYYDNEAIKEPVKQDWGTRNRTNGKYHNSGSGLSPHSGLTKSYDRKNKRDVWSI 238
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
NK + H P L++ +++ ++ GDIILDPF GSGT+ VAK+L R +IG E+ +
Sbjct: 239 TNKPYKGSHFAVFPPDLITPCILAGSEKGDIILDPFMGSGTTAMVAKQLGRDYIGCELHE 298
Query: 256 DYIDIATKRI 265
+Y ++ +R+
Sbjct: 299 EYGNLIDQRV 308
>gi|255690810|ref|ZP_05414485.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
17565]
gi|260623614|gb|EEX46485.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
17565]
Length = 257
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 11/245 (4%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFSSF 78
DKI + + + + SVD + AD PY + + + + + + + + + +
Sbjct: 5 DKIYHMDCLKGMSLMADGSVDAVIADLPYGVLNRQNKHAKWDNAIPLEPLWEQYRRITKP 64
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV--WRKSNP 136
++ L + R +L + G + N ++ + + K P
Sbjct: 65 DSPIILFGQGLFSARLMLSQPNMWRYNLVWQKDRVTGHLNANRMPLRQHEDILVFYKKQP 124
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + + Y ++ S +P +
Sbjct: 125 VYHPQMSYKPEKKNHPRGMFKRMTNRCYGAMKPTPSHISDWKYPTSVIYMPKEFRT---- 180
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
G HPTQKP AL ++ + T GD +LD GSGT+ A + R +IG E++
Sbjct: 181 ---GMFYHPTQKPVALAEYLIRTYTNEGDTVLDNCIGSGTTAVAAIRTGRHYIGFEIEPA 237
Query: 257 YIDIA 261
Y +IA
Sbjct: 238 YCEIA 242
>gi|302035484|ref|YP_003795806.1| site-specific DNA-methyltransferase N-4/N-6 (phage related)
[Candidatus Nitrospira defluvii]
gi|300603548|emb|CBK39878.1| Site-specific DNA-methyltransferase N-4/N-6 (phage related)
[Candidatus Nitrospira defluvii]
Length = 413
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 34/249 (13%)
Query: 21 DKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G+S VL L VD++F DPPYN+ A+ + +
Sbjct: 173 HRLLCGDSTVAESYDVL--LQGSPVDMVFTDPPYNVNYANSAKDKMRGKDRAILND-NLG 229
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F YD F A L + G ++V S + + + + I+W K+
Sbjct: 230 DGF--YD-FLLAALTQMVTHCR--GGIYVAMSSSELDVLQSAFRAAGGKWSTFIIWAKNT 284
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ Y + A + D W +
Sbjct: 285 FTLGRA------------DYQRQYEPILYGWPEGAQRHWCGDRDQGDVWN---------I 323
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ LHPT KP L+ R + +S++PG+++LDPF GSGT+ A+K R IE+
Sbjct: 324 KKPQKNDLHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDP 383
Query: 256 DYIDIATKR 264
Y+D+ +R
Sbjct: 384 KYVDVIVRR 392
>gi|322836391|ref|YP_004215768.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
gi|321170944|gb|ADW76641.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
Length = 214
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 41/248 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ V+ P+ +VD I DPPY + + R +
Sbjct: 3 RFIQGDCEQVMSGFPSNAVDFILTDPPYLVGFTDRTGRTIANDKQG-------------- 48
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLKPN +++ + + F ++ +V+ K+ +
Sbjct: 49 -DWLLPVSKEMFRVLKPNSLAVSFYAWNRVDLFMQAWKAAGFRVVGHVVFTKTYAS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE+ + + + G
Sbjct: 105 SAFVGYRHESAYILAKGRPLLP-------------EKPLPDVMPWQYT----------GN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP ++L ++ S T+PG I+LDPF GSG++ A++ R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVSVLRPLIESFTQPGSIVLDPFAGSGSTCVAAEQAGRRWIGIELMEQYHATG 201
Query: 262 TKRIASVQ 269
+R+ ++
Sbjct: 202 LRRLTELR 209
>gi|159027337|emb|CAO90522.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 437
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/386 (16%), Positives = 127/386 (32%), Gaps = 95/386 (24%)
Query: 21 DKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ ++++VL L + V L++ DPP+ + + + +H A D
Sbjct: 57 NRLYHADNLAVLAALARDEAVSGKVKLVYIDPPFATASSFESRKQNH----AYDDHLVGP 112
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKS 134
+ R L+ R+L +G+L++ IF +L + + RK
Sbjct: 113 D----FVETLRERLILIHRLLADDGSLYLHLDERMIFHFRVVLDEIFGEKNFRNCITRKK 168
Query: 135 NPMPNFRGRRFQNAHETL----------------------------------IWASPSPK 160
N+ + + N + + P
Sbjct: 169 CNPKNYTRKTYGNVADYILFYTKSDNYVWNRPIEPWDEVKSVKEYPCLDPDGRRYKKVPV 228
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPIC----------------SGSERLR-------- 196
N + + +G+ R +
Sbjct: 229 HAPGVRNGETGGEWKGKLPPPGKHWQYKPSTLDEMDARGEIYWSPTGNPRRKIYLENSAG 288
Query: 197 -----------NKDGEKLH----PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ + +H PT+K ALLSRI+ +S+ PGD++LD + GSGT+ VA
Sbjct: 289 IPVQDIWMDFRDAHNQNIHITGYPTEKNPALLSRIIEASSNPGDLVLDCYAGSGTTLVVA 348
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV------E 295
+L R +IG++ Q+ I R+A+ + + K + P + E
Sbjct: 349 SELGRKWIGVDRSQEAITTILHRMANGSDRMGDFVNEKSKKASLPLFSIADFTLFEEAAE 408
Query: 296 RGLIQPGQILTNAQGNISATVCADGT 321
+ +T+ G T+ + G
Sbjct: 409 ENIQPKDADITSPNG--VLTIRSSGR 432
>gi|255020319|ref|ZP_05292387.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
gi|254970239|gb|EET27733.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
Length = 428
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/252 (19%), Positives = 89/252 (35%), Gaps = 31/252 (12%)
Query: 21 DKIIKGNSI--SVLEKL-PA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+++ G++ +L P + D++F DPPYN+ + + +
Sbjct: 171 HRLVCGDATTAEAYARLFPDGERADMVFTDPPYNVNYANSAKDKLRGKHRPILND----A 226
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E + F L + G ++V S + + + I+W K+
Sbjct: 227 LGEGFYDFLYDALSLLVAHTR--GAIYVAMSSSELDTLQAAFRTAGGHWSTFIIWAKNTF 284
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ Y + + D W ++
Sbjct: 285 TLGRS------------DYQRQYEPILYGWPEGGERHWCGDRDQGDVWQ---------IK 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
LHPT KP L+ R + +S++PGD++LDPF GSGT+ A+K R IE+
Sbjct: 324 KPAKNDLHPTMKPVELVERAIRNSSRPGDVVLDPFGGSGTTMIAAEKAGRVARLIELDPK 383
Query: 257 YIDIATKRIASV 268
Y D+ +R
Sbjct: 384 YADVIVRRWQDW 395
>gi|257085292|ref|ZP_05579653.1| DNA methylase [Enterococcus faecalis Fly1]
gi|256993322|gb|EEU80624.1| DNA methylase [Enterococcus faecalis Fly1]
gi|315579551|gb|EFU91742.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0630]
Length = 422
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 103/255 (40%), Gaps = 13/255 (5%)
Query: 23 IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G++ V + L K +L+ DPPYN+ + + S + + + S E
Sbjct: 175 LLCGDATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMND---DMSDE 231
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+D F + ++ + ++V + ++ + +W K+N
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIFVRSQCIWVKNNATFG 291
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ +++ HE + +A +A + + +D+ I R+
Sbjct: 292 WS--QYRWQHEPVFYAHKKKQAPAWYGDRKQTTVWQDDLLEDLPATIWKVP-----RDDV 344
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQKP +L++ + +S+K DI+LD F GSG++ ++L R +E+ + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404
Query: 260 IATKRIASVQPLGNI 274
+ +R +
Sbjct: 405 VIIERFEKSTGIIAE 419
>gi|328954500|ref|YP_004371834.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
gi|328454824|gb|AEB10653.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 302
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/263 (19%), Positives = 84/263 (31%), Gaps = 35/263 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I G++ L L +S+ L+ PPY + + D F ++E
Sbjct: 6 HRLINGDARD-LSFLEDESIHLVVTSPPYW----------NLKHYNENPDQLGHFKNYET 54
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ RV P G L + + R + + V + N
Sbjct: 55 FLNELEKVWRQVFRVFVPGGRLVCVVGDVCVARRAFGRHLVFPLHADICVTCRKIGFDNL 114
Query: 141 R---GRRFQNAHETLIWASPS-------------------PKAKGYTFNYDALKAANEDV 178
+ NA + S + K + + NE
Sbjct: 115 NPIIWHKIANASYEVANGSKFLGKPYEPNAIIKNDMEFILMQRKPGGYRKPSDYQRNESK 174
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S + HP P L +R++ + D +LDPF GSGT+
Sbjct: 175 I--SKEKFNQWFKQIWHIPGASTRHHPAPFPLELATRLIRMFSFVNDTVLDPFCGSGTTM 232
Query: 239 AVAKKLRRSFIGIEMKQDYIDIA 261
A + +R+ IGIE+ DY +A
Sbjct: 233 IAAMRTKRNSIGIEVDPDYCKLA 255
>gi|190573863|ref|YP_001971708.1| putative DNA methyltransferase [Stenotrophomonas maltophilia K279a]
gi|190011785|emb|CAQ45405.1| putative DNA methyltransferase [Stenotrophomonas maltophilia K279a]
Length = 415
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/272 (21%), Positives = 98/272 (36%), Gaps = 34/272 (12%)
Query: 21 DKIIKGN-----SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G+ S L L VD++F DPPYN+ A+ + +
Sbjct: 171 HRLLCGDATVAESYDAL--LQGAPVDMVFTDPPYNVNYANSAKDKMRGKDRAILND-NLG 227
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F YD F A L + G ++V S + + + + I+W K+
Sbjct: 228 DGF--YD-FLLAALTQMVANCR--GGIYVAMSSSELDVLQSAFRAAGGKWSTFIIWAKNT 282
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ Y + A + D W +
Sbjct: 283 FTLGRA------------DYQRQYEPILYGWPEGAQRHWCGDRDQGDVWQ---------I 321
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ LHPT KP L+ R + +S++PG+++LDPF GSGT+ A+K R IE+
Sbjct: 322 KKPQKNDLHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDP 381
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
Y+D+ +R + I T P
Sbjct: 382 KYVDVIVRRWENFTGQQAIREADDTSFDVLPV 413
>gi|167914799|ref|ZP_02501890.1| site-specific DNA methyltransferase [Burkholderia pseudomallei 112]
Length = 258
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 95/259 (36%), Gaps = 32/259 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 13 DLSPLLDRLHATDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSGTKT 72
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 73 VYTDFESDNMDQRAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 132
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 133 GVAVWDKTPGRTRPRRGGFAQQAEFVVWASRG--------------------AMRDCEVY 172
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A A++
Sbjct: 173 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGL 228
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IG E Y IA R+
Sbjct: 229 HWIGCETNAAYHAIALHRL 247
>gi|219851568|ref|YP_002466000.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
E1-9c]
gi|219545827|gb|ACL16277.1| DNA methylase N-4/N-6 domain protein [Methanosphaerula palustris
E1-9c]
Length = 294
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 13/226 (5%)
Query: 22 KIIKGNSIS-VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
G+ IS +P SVDLI DPPY + + + + V + S
Sbjct: 10 TFYHGDCISGAAAAIPDNSVDLIITDPPYGINGDKLHRHYNRNEAFVVDGYIEIPQS--E 67
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y F+ W+ RVL+P G+++++ Y N+ I L+ + +N I+W+ S + F
Sbjct: 68 YADFSVNWIREAERVLRPGGSIYIVSGYTNLVDILNALRGTSLTEVNHIIWKYSFGV--F 125
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLR 196
++F ++H +++ + TFN ++ + + + + +
Sbjct: 126 TRQKFVSSHYHILFYEKPGGRR--TFNLESRFGLVEKTGDGRSCNNADREDVWVINREYK 183
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + P LL++++ S+ GD++ D F G ++ VA
Sbjct: 184 PSQVKNK--NELPFKLLAKMIQYSSNEGDLVADFFLGGFSTAKVAI 227
>gi|53803169|ref|YP_115059.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
capsulatus str. Bath]
gi|53756930|gb|AAU91221.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
capsulatus str. Bath]
Length = 421
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 90/253 (35%), Gaps = 34/253 (13%)
Query: 21 DKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWDKF 75
+++ G++ L VD++F DPPYN+ A+ + D F
Sbjct: 173 HRLLCGDATVADSYARLLAGDPVDMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLGDGF 232
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F A + CR G ++V S + + + I+W K+
Sbjct: 233 HDFL--LAALTPTVANCR------GAIYVAMSSSELDTLQAAFRAAGGHWSTFIIWAKNT 284
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ Y + A + D W +
Sbjct: 285 FTLGRA------------DYQRQYEPILYGWPEGAQRHWCGDRDQGDVWQ---------I 323
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ LHPT KP L+ R + +S++PG ++LDPF GSGT+ A+K R IE+
Sbjct: 324 KKPQRNDLHPTMKPVELVERAIRNSSRPGAVVLDPFGGSGTTLIAAEKAGRVARLIELDP 383
Query: 256 DYIDIATKRIASV 268
Y+D+ +R
Sbjct: 384 KYVDVIVRRWQDW 396
>gi|218441101|ref|YP_002379430.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
gi|218173829|gb|ACK72562.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
Length = 267
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/253 (19%), Positives = 82/253 (32%), Gaps = 25/253 (9%)
Query: 22 KIIKGNS-ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ +G+S + L + +DLI PPYN+ +N D S++
Sbjct: 21 TLYQGDSTLDNL--FNEEFIDLIVTSPPYNVGINYNSS--------------DDEISYQD 64
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI----FRIGTMLQNLNFWILNDIVWRKSNP 136
Y F+ W+ C R K + +G L + +
Sbjct: 65 YLEFSGQWMSNCYRWSKTQARFALNIPLDKNKGGNRSVGADLTRIAQEVGWKYQSTIVWN 124
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
N R + + + Y + + L
Sbjct: 125 EGNISRRTAWGSWLSASAPFVIAPVELIVIFYKDQWKKTNGTKQSDIKREEFLEWTNGLW 184
Query: 197 NKDGE----KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+GE HP P L R + + D + DPF GSGT+ A + +R IG+E
Sbjct: 185 TFNGESKKRIGHPAPFPRELPYRCIKLFSYVDDWVFDPFCGSGTTLLEAYRNKRKGIGVE 244
Query: 253 MKQDYIDIATKRI 265
+ +Y +IA R+
Sbjct: 245 LDLNYCEIAKTRL 257
>gi|262377930|ref|ZP_06071137.1| DNA methylase [Acinetobacter lwoffii SH145]
gi|262307142|gb|EEY88298.1| DNA methylase [Acinetobacter lwoffii SH145]
Length = 304
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/269 (24%), Positives = 99/269 (36%), Gaps = 49/269 (18%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G+ + +L+ LP SVDLI PPY Q S V E Y
Sbjct: 8 QIINGDCLEMLKLLPDNSVDLIITSPPYADQRK--------STYGGVK--------PEQY 51
Query: 82 DAFTRAWLLACRRVLKPNGTL-------WVIGSYHN-IFRIGTMLQNLNFWILNDIVWRK 133
+ RVLK +G+ V G H + + L+ + + VW K
Sbjct: 52 VEWFLPIAQQLLRVLKQSGSFVLNIKEKVVNGERHTYVLELILALKKQGWLWTEEYVWHK 111
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P RF++ E + + + K Y + +M+ +
Sbjct: 112 KNSFPGKWPNRFRDGWERCLHFNKTKKFNMYQETVMVPMGDWKKTRMKKLSKTDMQRDES 171
Query: 194 RLRNKDGEKL-------------------------HPTQKPEALLSRILVSSTKPGDIIL 228
++ + G+ + H P+ L + + +K GDIIL
Sbjct: 172 KVGSGFGKNISNWIDRDMAYPDNVLHFATVCNNRNHSAAFPDELPAWFINLFSKEGDIIL 231
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
DPF GSGTS VA L R IGIE+ + Y
Sbjct: 232 DPFSGSGTSVRVATNLGRVGIGIEILETY 260
>gi|307291440|ref|ZP_07571324.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
gi|306497671|gb|EFM67204.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
gi|315033855|gb|EFT45787.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0017]
Length = 422
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 103/255 (40%), Gaps = 13/255 (5%)
Query: 23 IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G++ V + L K +L+ DPPYN+ + + S + + + S E
Sbjct: 175 LLCGDATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMND---DMSDE 231
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+D F + ++ + ++V + ++ + +W K+N
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIFVRSQCIWVKNNATFG 291
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ +++ HE + +A +A + + +D+ I R+
Sbjct: 292 WS--QYRWQHEPVFYAHKKKQAPAWYGDRKQTTVWQDDLLEDLPATIWKVP-----RDDV 344
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQKP +L++ + +S+K DI+LD F GSG++ ++L R +E+ + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404
Query: 260 IATKRIASVQPLGNI 274
+ +R +
Sbjct: 405 VIIERFEKSTGIIAE 419
>gi|315034680|gb|EFT46612.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0027]
Length = 400
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 32/248 (12%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S + V + + K DL+ DPPYN+ G+ +A+T D
Sbjct: 157 RHRLMCGDSTNSLEVEKLMGNKKADLLITDPPYNVAYEGKGK-------EALTIKNDSKE 209
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + +F A +K + +V + + T L+ F + +++W K++
Sbjct: 210 TN-EFHSFLYEAFSAAINNMKLGSSFYVWYASSEVVNFHTALEEAGFLVKQELIWNKNSM 268
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + HE ++ S + + + N D
Sbjct: 269 V--LSRQDYHWKHEPCLYGWASGGSHSWYSDRKQTTILNFDRPTV--------------- 311
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL + +S+K GD ILD F GSGT+ ++ R +E+
Sbjct: 312 ----NKEHPTMKPVALFDYQIKNSSKQGDCILDLFGGSGTTLIACEQNEREAYLMELDPR 367
Query: 257 YIDIATKR 264
Y+D+ R
Sbjct: 368 YVDVIIAR 375
>gi|225847886|ref|YP_002728049.1| modification methylase MjaVI (N-4
cytosine-specificmethyltransferase MjaVI) (M.MjaVI)
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643473|gb|ACN98523.1| modification methylase MjaVI (N-4
cytosine-specificmethyltransferase MjaVI) (M.MjaVI)
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 325
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/268 (21%), Positives = 97/268 (36%), Gaps = 25/268 (9%)
Query: 22 KIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ + I V L V+LI PPYN+ + + DAV +E
Sbjct: 74 KLFHNDFIEV--DLSDYKGKVNLIITSPPYNVGIEYGKH------NDAVN--------YE 117
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
Y +FT WL +L +G + I N + + + +S +
Sbjct: 118 DYLSFTEKWLYKSYELLADDGRACINIPLDKNRNGLKPVYADFINIAKKVGFNYQSTIVW 177
Query: 139 NFRGRRFQNAHETLIWASPSPK----AKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N + + A + + AS K N+ + +
Sbjct: 178 NEQNVSKRTAWGSWLSASAPYVIAPVEMIVVLYKKQWKRINKGESTITREEFIQWTNGVW 237
Query: 195 LRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ + +K HP P L R + + D++LDPF GSGT+ A K R IG+E
Sbjct: 238 NFSGESKKRVGHPAPFPLELPKRCIKLFSYKDDLVLDPFSGSGTTLIAAFKEERRAIGVE 297
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLT 280
+ ++YID++ +R+ L +
Sbjct: 298 IDKNYIDLSVERLTKEISKPQKNLLNID 325
>gi|85717470|ref|ZP_01048418.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85695716|gb|EAQ33626.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
Length = 432
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 96/259 (37%), Gaps = 13/259 (5%)
Query: 21 DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V + + ++F DPPYN++++G + + + S
Sbjct: 170 HRLICGDARDPDTVAALMGPEQAQMVFTDPPYNVRIDGNVGGLGSIRHREFAMASGEM-S 228
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F +A R ++ + ++ + + + N IVW K N
Sbjct: 229 EPEFTGFLKASFGNLTRHSIDGSIHYICMDWRHMAEMLKAGDGIYTELKNLIVWAKDNGG 288
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G +++ HE + T + + + R++ + +
Sbjct: 289 M---GTFYRSRHELIFAFK------NGTAPHHNHFELGQHGRYRTNVWEYRGVNTMKAGR 339
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
D LHPT KP A+++ + + G I+LD F GSG++ A K R E Y
Sbjct: 340 LDELALHPTVKPVAMIADAIKDVSSRGGIVLDLFGGSGSTLIAAHKTGRRACICEYDPIY 399
Query: 258 IDIATKRIASVQPLGNIEL 276
D +R + ++
Sbjct: 400 CDRIIQRWETYAKDEAEQI 418
>gi|57505513|ref|ZP_00371440.1| adenine specific DNA methyltransferase (hpaim) [Campylobacter
upsaliensis RM3195]
gi|57016060|gb|EAL52847.1| adenine specific DNA methyltransferase (hpaim) [Campylobacter
upsaliensis RM3195]
Length = 272
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 99/264 (37%), Gaps = 29/264 (10%)
Query: 13 QNSIFEWKDK-IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+N F +++ + + +S++ L S DLI PPYN+ + +
Sbjct: 13 ENGGFNYENINLYQNSSLNK-NILSKNSCDLIITSPPYNVGIEYNSNEDSN--------- 62
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNF 123
S+E+Y FT+ W+ C K + + T+ + + +
Sbjct: 63 -----SYESYLEFTQKWIENCYFWAKDGARFCLNIPLDKNKGGQQSVGADLTTLAKQIGW 117
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--VQMR 181
+ I+W + N + +A + A Y + D +
Sbjct: 118 KYHSTIIWNEGNISRRTAWGSWLSASAPYVIAPVELIVVLYKGAWKKKHKGESDISKEEF 177
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
W + S + + + G HP P L R + + GD++ DPF GSGT+ +
Sbjct: 178 MAWTNGLWSFNGESKKRIG---HPAPFPRELPKRCIKLFSYVGDVVFDPFCGSGTTMIES 234
Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
R FIGIE+ + Y +++ KR
Sbjct: 235 YLNNRQFIGIELDRQYCELSKKRF 258
>gi|317484071|ref|ZP_07943003.1| DNA methylase [Bilophila wadsworthia 3_1_6]
gi|316924677|gb|EFV45831.1| DNA methylase [Bilophila wadsworthia 3_1_6]
Length = 248
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/252 (18%), Positives = 89/252 (35%), Gaps = 32/252 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTDSWD 73
+ +G+++ +L LP +D + DPPY+ Q +
Sbjct: 11 TLYQGDALGILATLPDAVMDAVLTDPPYSSGGVTMGARQADPAQKYQQSGTKRQYPPMLG 70
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL C R+ + L V + + + +Q + I W K
Sbjct: 71 DAKDQRSWTMWCTLWLGECWRIAREGAPLMVFTDWRQLPALSDAVQAAGWAWRGVIAWDK 130
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ P + + + A + + G
Sbjct: 131 RSARPQI---------------------GKFRQQCEYVLFATKGRFIA--HTRACLPGVY 167
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+K+H T KP AL+ + ++ T P +LDPF G G+ G + R ++G+E+
Sbjct: 168 SYPVIPVQKVHLTSKPVALIEDL-LAVTAPHASVLDPFMGGGSVGEACIRTGRGYVGMEL 226
Query: 254 KQDYIDIATKRI 265
++Y DI+ R+
Sbjct: 227 SREYYDISRTRL 238
>gi|312903193|ref|ZP_07762373.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
gi|310633069|gb|EFQ16352.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
Length = 422
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 102/255 (40%), Gaps = 13/255 (5%)
Query: 23 IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G++ V + L K +L+ DPPYN+ + + S + + + S E
Sbjct: 175 LLCGDATKPSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMND---DMSDE 231
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+D F A ++ + ++V + + + +W K+N
Sbjct: 232 EFDQFLMAVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIVVRSQCIWVKNNATFG 291
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ +++ HE + +A +A + + +D+ I R+
Sbjct: 292 WS--QYRWQHEPVFYAHKKKQAPSWYGDRKQTTIWQDDLLEDLPATIWKVP-----RDDV 344
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQKP +L++ + +S+K DI+LD F GSG++ ++L R +E+ + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404
Query: 260 IATKRIASVQPLGNI 274
+ +R +
Sbjct: 405 VIIERFEKSTGIIAE 419
>gi|227553252|ref|ZP_03983301.1| DNA methylase N-4/N-6 [Enterococcus faecalis HH22]
gi|227177618|gb|EEI58590.1| DNA methylase N-4/N-6 [Enterococcus faecalis HH22]
Length = 422
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 102/255 (40%), Gaps = 13/255 (5%)
Query: 23 IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G++ V + L K +L+ DPPYN+ + + S + + + S E
Sbjct: 175 LLCGDATKPSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMND---DMSDE 231
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+D F + ++ + ++V + + + +W K+N
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIVVRSQCIWVKNNATFG 291
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ +++ HE + +A +A + + +D+ I R+
Sbjct: 292 WS--QYRWQHEPVFYAHKKKQAPSWYGDRKQTTIWQDDLLEDLPATIWKVP-----RDDV 344
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQKP +L++ + +S+K DI+LD F GSG++ ++L R +E+ + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404
Query: 260 IATKRIASVQPLGNI 274
+ +R +
Sbjct: 405 VIIERFEKSTGIIAE 419
>gi|194435302|ref|ZP_03067516.1| DNA methyltransferase [Shigella dysenteriae 1012]
gi|194416451|gb|EDX32606.1| DNA methyltransferase [Shigella dysenteriae 1012]
Length = 287
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 41/236 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQY 197
>gi|299142745|ref|ZP_07035874.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris C735]
gi|298575774|gb|EFI47651.1| DNA (cytosine-5-)-methyltransferase [Prevotella oris C735]
Length = 399
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 96/264 (36%), Gaps = 32/264 (12%)
Query: 21 DKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++++ G+ + L V D+I DPPYN+ G D++ +
Sbjct: 150 NRLMCGDCRSKKDIVTLMNGRVADMILTDPPYNVNYEGGGDSKLTIQNDSMEND------ 203
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F ++ ++K G+ +V + ++ F I +W K + +
Sbjct: 204 --LFLRFLQSVFNVMFSIVKAGGSFYVFHADSEGENFRRAIREAGFKIAQCCIWVKDSLV 261
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y + A N D + + W
Sbjct: 262 MGR------------QDYQWQHEPCLYGWKPGAAHFWNSDRKQTTIWNFDKP-------- 301
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
++HPT KP AL+ + +STK GDI++D F GSG++ ++ R G+E+ Y
Sbjct: 302 -KANRIHPTMKPIALMVYPITNSTKNGDIVVDVFSGSGSTIMACQQTDRIGYGMEIDPKY 360
Query: 258 IDIATKRIASVQPLGNIELTVLTG 281
+ +R ++ P I L
Sbjct: 361 VSATVRRYMAMFPQQPILLERDGN 384
>gi|313892468|ref|ZP_07826058.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
345-E]
gi|313119150|gb|EFR42352.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
345-E]
Length = 251
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 46/275 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI +G+ + +++ + S+D+I DPPY + WDK
Sbjct: 3 KIYRGDCLELMKNIKDNSIDMILCDPPYGT----------------TSAVWDKALD---- 42
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R++K NG + + + ++ + + +W+K+ + F
Sbjct: 43 ---CNLLWEQYNRIIKQNGAIVLFS---QLPFSCDLITTNRKYFRYEWIWQKNMAVGFFN 96
Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDV-------------------QMR 181
++ HE ++ D+ + +
Sbjct: 97 AKKMPLRQHENILVFYKRLPTYNPQMKQGCKPYKKRDIGRIYSTSQVYGRSQKDRIMKFQ 156
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ ++ LR K H TQKP LL ++ + T + +LD GSG++G
Sbjct: 157 QRENKGVRYPTDVLRFKSARHKHATQKPIDLLMYLIKTYTNENETVLDNCMGSGSTGVAC 216
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
K L R FIG+E++QD+ ++A RI S + G + L
Sbjct: 217 KMLNRKFIGMELRQDFFNVAVDRILSCKSQGELFL 251
>gi|225375789|ref|ZP_03753010.1| hypothetical protein ROSEINA2194_01421 [Roseburia inulinivorans DSM
16841]
gi|225212386|gb|EEG94740.1| hypothetical protein ROSEINA2194_01421 [Roseburia inulinivorans DSM
16841]
Length = 270
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/273 (19%), Positives = 90/273 (32%), Gaps = 34/273 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDH 62
E W KI+ G+++ +++ D + DPPY
Sbjct: 21 EEYTEGENW--KILHGDTLKLVKAFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSM 78
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
S +A+ D ++ + WL R+ K + + + I LQ
Sbjct: 79 SAANALPDFDGDNKDQRSWTHWMAEWLYDVRKACKKGAPICLFIDWRQYPSITDALQWAG 138
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
+ VW K N P +GR Q A + M
Sbjct: 139 WIWRGTAVWDKGNSRP-QKGRFRQQA---------------------EYIVWGSNGPMPI 176
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + G R N ++H T+KP L+ ++ G +ILDPF G+GT+ A
Sbjct: 177 NRPVSCLPGVFRYGN-PQNRIHVTEKPLQLMKDVIQICEPRG-LILDPFVGAGTTVLAAV 234
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
+GIE+ Y + + R+ E
Sbjct: 235 MTGYRAVGIEVTDAYYKLGSDRVKIALEAEQKE 267
>gi|315575495|gb|EFU87686.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309B]
gi|315580064|gb|EFU92255.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0309A]
Length = 422
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 102/255 (40%), Gaps = 13/255 (5%)
Query: 23 IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G++ V + L K +L+ DPPYN+ + + S + + + S E
Sbjct: 175 LLCGDATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMND---DMSDE 231
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+D F + ++ + ++V + + + +W K+N
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIVVRSQCIWVKNNATFG 291
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ +++ HE + +A +A + + +D+ I R+
Sbjct: 292 WS--QYRWQHEPVFYAHKKKQAPSWYGDRKQTTIWQDDLLEDLPATIWKVP-----RDDV 344
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQKP +L++ + +S+K DI+LD F GSG++ ++L R +E+ + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404
Query: 260 IATKRIASVQPLGNI 274
+ +R +
Sbjct: 405 VIIERFEKSTGIIAE 419
>gi|254197164|ref|ZP_04903587.1| DNA methylase [Burkholderia pseudomallei S13]
gi|169653906|gb|EDS86599.1| DNA methylase [Burkholderia pseudomallei S13]
Length = 291
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 95/259 (36%), Gaps = 32/259 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 46 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKT 105
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 106 VYTDFESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 165
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 166 GVAVWDKTPGRTRPRRGGFAQQAEFVVWASRG--------------------AMRDCEVY 205
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A A++
Sbjct: 206 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREASL 261
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IG E Y IA R+
Sbjct: 262 HWIGCETNAAYHAIALHRL 280
>gi|134288704|ref|YP_001111190.1| gp40, DNA methylase [Burkholderia phage phiE12-2]
gi|134132089|gb|ABO60764.1| gp40, DNA methylase [Burkholderia phage phiE12-2]
Length = 291
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 95/259 (36%), Gaps = 32/259 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 46 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKT 105
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 106 VYTDFESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 165
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 166 GVAVWDKTPGRTRPRRGGFAQQAEFVVWASRG--------------------AMRDCEVY 205
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A A++
Sbjct: 206 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREASL 261
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IG E Y IA R+
Sbjct: 262 HWIGCETNAAYHAIALHRL 280
>gi|83716835|ref|YP_439534.1| site-specific DNA-methyltransferase [Burkholderia thailandensis
E264]
gi|134288786|ref|YP_001111068.1| gp37, DNA methylase [Burkholderia phage phiE202]
gi|83650660|gb|ABC34724.1| site-specific DNA-methyltransferase XF2313 [Burkholderia
thailandensis E264]
gi|134131999|gb|ABO60747.1| gp37, DNA methylase [Burkholderia phage phiE202]
Length = 258
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 95/259 (36%), Gaps = 32/259 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVD 66
+ D++ +++++ LP S+D++F DPPY+ R +
Sbjct: 13 DLSPLLDRLHAMDALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKT 72
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
TD A+ + AWL CRR LKP G L + + + ++Q +
Sbjct: 73 VYTDFESDNMDQRAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILR 132
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
VW K+ R F E ++WAS MR +
Sbjct: 133 GVAVWDKTPGRTRPRRGGFAQQAEFVVWASRG--------------------AMRDCEVY 172
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
RL K H T+KP + ++ G ++ D F GSGT A A++
Sbjct: 173 LPGVFPCRL---PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREASL 228
Query: 247 SFIGIEMKQDYIDIATKRI 265
+IG E Y IA R+
Sbjct: 229 HWIGCETNAAYHAIALHRL 247
>gi|260588437|ref|ZP_05854350.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
gi|260541311|gb|EEX21880.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
Length = 238
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 88/250 (35%), Gaps = 30/250 (12%)
Query: 23 IIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + + V+ L + VD I DPPY ++ WDK +
Sbjct: 7 LYQADCFDVMNDLIKQDVKVDAIICDPPYLIKQA----------------DWDKEFN--- 47
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ C +LK NG L + + N+ + +L + + +
Sbjct: 48 ----MPLAINLCYDLLKDNGNLILFQGWSNVLQTKELLDEKFE--IQNWIVWDRIKGRGA 101
Query: 141 RGRRFQNAHETLIWAS--PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL-RN 197
+ + L + K Y+ + L + +
Sbjct: 102 KKNFVSTREDILWYCKGDKPTFNKIYSNIPKKTGGMGKKNGQECRALTNVWYDISPIVPW 161
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPTQKP L+ R + T GD +LD GSGT+G K L R FIGIE +++Y
Sbjct: 162 SKERNGHPTQKPLQLMERCVTIWTNEGDTVLDFTMGSGTTGEACKNLNRKFIGIEKEEEY 221
Query: 258 IDIATKRIAS 267
+IA R+
Sbjct: 222 FNIAKDRLKE 231
>gi|298373418|ref|ZP_06983407.1| DNA modification methylase [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274470|gb|EFI16022.1| DNA modification methylase [Bacteroidetes oral taxon 274 str.
F0058]
Length = 364
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 109/296 (36%), Gaps = 51/296 (17%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K + + Q I + + + + ++ L++ S+DLI PPY Q
Sbjct: 85 KEAEILENKQGIISDVL--LFRDDCLNKLKQFKDDSIDLIITSPPYADQRKKTYG----- 137
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIG 115
Y + + RVLKP+GT + + +
Sbjct: 138 -----------GIPPNKYVEWFLSISEQLLRVLKPSGTFILNIKEKVSQGERSTYVIELV 186
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------F 166
++ + + +W K N P RF+++ E L+ + + K Y +
Sbjct: 187 LEMKKQGWLWTEEFIWHKKNSFPGKWSNRFRDSWERLLQFNKNKKFNMYQDAVKIPIGDW 246
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSE----------------RLRNKDGEKLHPTQKPE 210
D LK ++ ++R + G + L + K H PE
Sbjct: 247 ASDRLKKLSDVDKIRDNAKNGSGFGKKVSNWLGKDMVYPSNVLYLATECNNKKHSAAFPE 306
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+L + T+ GDI+LDPF GSGT+ +VA +L R IGIE+ YI++
Sbjct: 307 SLPEWFIKLFTQEGDIVLDPFVGSGTTLSVAYRLNRKSIGIEIIPQYIEVIKNNFK 362
>gi|29376019|ref|NP_815173.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
gi|29343481|gb|AAO81243.1| adenine methyltransferase, putative [Enterococcus faecalis V583]
Length = 422
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 102/255 (40%), Gaps = 13/255 (5%)
Query: 23 IIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G++ V + L K +L+ DPPYN+ + + S + + + S E
Sbjct: 175 LLCGDATKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMND---DMSDE 231
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+D F + ++ + ++V + + + +W K+N
Sbjct: 232 EFDQFLMSVFQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIVVRSQCIWVKNNATFG 291
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ +++ HE + +A +A + + +D+ I R+
Sbjct: 292 WS--QYRWQHEPVFYAHKKKQAPSWYGDRKQTTIWQDDLLEDLPATIWKVP-----RDDV 344
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQKP +L++ + +S+K DI+LD F GSG++ ++L R +E+ + D
Sbjct: 345 ATYYHPTQKPLSLIAIPVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCD 404
Query: 260 IATKRIASVQPLGNI 274
+ +R +
Sbjct: 405 VIIERFEKSTGIIAE 419
>gi|328954069|ref|YP_004371403.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
gi|328454393|gb|AEB10222.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 423
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/319 (17%), Positives = 97/319 (30%), Gaps = 48/319 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+II G+ + +L +V L+ PPY + S+E
Sbjct: 4 HRIIVGDCRR-MPELADATVHLVVTSPPYWQLKDY-----------GPKQQIGYDDSYED 51
Query: 81 YDAFTRAWLLACRRVLKPNGTLWV--------------------------IGSYHNIFRI 114
Y C RVL P L V +
Sbjct: 52 YINHLNLVWQECWRVLHPGCRLCVNIGDQFARAAYYGRYKIMPIRTEIIKFCETMGFDYM 111
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
G ++ P R + +E ++ A
Sbjct: 112 GAIIWQKVTTCNTSGGATIMGSFPFPRNGMLKLDYEFILIFKKPGATPP------ASAEV 165
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
E +M + G + K H PE L R++ T G+ +LDPF GS
Sbjct: 166 KERSRMSQEEWKTYFQGHWNFPGEKQSK-HLAMFPEELPRRLIKMFTFVGETVLDPFLGS 224
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNL 292
GT+ A+ L R+ +G E+ ++++ I +++ G+ E+ + K+ P
Sbjct: 225 GTTSLTARNLGRNSVGYEINEEFLPIIQEKLGLQHGALFGSDEVVLTQRKKA-PTDHMTR 283
Query: 293 LVERGLIQPGQILTNAQGN 311
+ + I + + N
Sbjct: 284 IAALPYVFHDPIRFDKKNN 302
>gi|229815289|ref|ZP_04445624.1| hypothetical protein COLINT_02335 [Collinsella intestinalis DSM
13280]
gi|229809069|gb|EEP44836.1| hypothetical protein COLINT_02335 [Collinsella intestinalis DSM
13280]
Length = 408
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 28/264 (10%)
Query: 21 DKIIKGN--SISVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPD----HSLVDAVTDSWD 73
+I+ G+ +EKL DL+ DPPYN+ L + + H D + D
Sbjct: 166 HRIMCGDSTCREDVEKLGGGGFCDLLLTDPPYNVALGQHMRPSELKQLHRRTDGLVIEND 225
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +A+ AF ++ VL P ++ + + + +VW K
Sbjct: 226 SWDDDDAFVAFLKSAFDNAMEVLNPGAAFYIWHADSQRMNFLRACELSGMTVRECLVWAK 285
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + +Q HE ++ A + + D
Sbjct: 286 NTFALG--RQDYQWRHEPCLYGWKDGAAHSWYSDRKQSTVLEFDKP-------------- 329
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
HPT KP L++ ++ +STK GD +LD F GSG++ + + R + +E+
Sbjct: 330 -----SVNAEHPTMKPVGLMAYLIRNSTKEGDTVLDVFGGSGSTLMACEGMGRRCLSMEL 384
Query: 254 KQDYIDIATKRIASVQPLGNIELT 277
Y D+ R + ++L
Sbjct: 385 DPHYCDVIITRWENATGKTAMKLE 408
>gi|167839692|ref|ZP_02466376.1| site-specific DNA methyltransferase [Burkholderia thailandensis
MSMB43]
Length = 230
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 59/251 (23%), Positives = 94/251 (37%), Gaps = 32/251 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWDKFSSF 78
+++++ LP S+D++F DPPY+ R + TD
Sbjct: 2 DALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSAKCINSDTKTVYTDFESDNMDQ 61
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ + AWL CRR LKP G L + + + ++Q + VW K+
Sbjct: 62 RAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPGRT 121
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
R F E ++WAS DV + + +
Sbjct: 122 RPRRGGFAQQAEFVVWASRGAMRDC-------------DVYLPGVFPCRLPVP------- 161
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
K H T+KP + ++ G ++ D F GSGT A A++ +IG E Q Y
Sbjct: 162 ---KRHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGLHWIGCETNQAYH 217
Query: 259 DIATKRIASVQ 269
IA +R+A
Sbjct: 218 AIAEQRLAITN 228
>gi|268507185|ref|YP_003293984.1| DNA modification methylase [Escherichia coli ETEC H10407]
gi|266265506|dbj|BAI49210.1| DNA modification methylase [Escherichia coli ETEC H10407]
gi|309705571|emb|CBJ04416.1| putative site-specific DNA methyl transferase [Escherichia coli
ETEC H10407]
Length = 227
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 53/248 (21%), Positives = 94/248 (37%), Gaps = 41/248 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DDWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+ P L ++ S T P I+LDPF GSG++ A + +IGIE+ + Y
Sbjct: 142 RHHPTENPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGCRYIGIELLEQYHRAG 201
Query: 262 TKRIASVQ 269
+R+A+VQ
Sbjct: 202 QQRLAAVQ 209
>gi|326782796|ref|YP_004323194.1| DNA adenine methylase [Prochlorococcus phage P-RSM4]
gi|310004055|gb|ADO98449.1| DNA adenine methylase [Prochlorococcus phage P-RSM4]
Length = 317
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/309 (20%), Positives = 110/309 (35%), Gaps = 74/309 (23%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KD I+ G+ + + + + V + PPY + + + + E
Sbjct: 7 KDTILYGDCRNTIPTI-HERVQMCVTSPPYYGLRDYG----------GESSQIGQEQTPE 55
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG--SYHNI-------------------------- 111
Y + VL +GTLW+ SY+N
Sbjct: 56 EYIEELVKVFREVKNVLADDGTLWLNIGDSYYNYRPGKGQSYPKQTVSKTKQDLPDKCNK 115
Query: 112 -----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+ + L+ +++ DI+W K NPMP R AHE +
Sbjct: 116 RGNKLEGLKEKDLIGIPWLLAFALRKDGWYLRQDIIWHKPNPMPESVKDRCTKAHEYIFL 175
Query: 155 ASPSPKAK------------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLR------ 196
S + K T + K N+ + + ++ R
Sbjct: 176 FSKNKKYYYDNEAIKEPAKDWGTRDRTKGKYHNKGTGLSPHTGLNKSYPTKNKRSVWSVT 235
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
NK + H P L+ +++ +K GD+ILDPF GSGT+ V+K+L R +IG E+ ++
Sbjct: 236 NKPYKGTHFAVFPPDLIEPCILAGSKKGDLILDPFMGSGTTAMVSKQLDRHYIGCELHEE 295
Query: 257 YIDIATKRI 265
Y + R+
Sbjct: 296 YKSLIDSRL 304
>gi|303235921|ref|ZP_07322524.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
gi|302483794|gb|EFL46786.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
Length = 440
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 53/259 (20%), Positives = 100/259 (38%), Gaps = 32/259 (12%)
Query: 21 DKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++++ G+ S ++ L D+I DPPYN+ G D++ +
Sbjct: 191 NRLMCGDCRSTKDVQALMNGRLADMILTDPPYNVNYEGGNDDKMTIQNDSMEND------ 244
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F ++ +V+KP G+ +V + ++ F I +W K N +
Sbjct: 245 --LFFRFLKSVFDVMYKVVKPGGSYYVFHADSEGENFRRAIREAGFKIAQCCIWVKDNFV 302
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y + A N D + + W
Sbjct: 303 MGR------------QDYQWKHEPCLYGWKKGAAHYWNSDRKQTTIWNFD---------K 341
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
++HPT KP AL++ + +STK G++I+D F GSG++ ++ R G+E+ Y
Sbjct: 342 PKANRIHPTMKPIALMAYPITNSTKNGELIVDFFSGSGSTIMACQQTDRIGYGMEIDPKY 401
Query: 258 IDIATKRIASVQPLGNIEL 276
+ +R + P I+L
Sbjct: 402 VTATVRRFMGMFPQQGIQL 420
>gi|154500275|ref|ZP_02038313.1| hypothetical protein BACCAP_03941 [Bacteroides capillosus ATCC
29799]
gi|150271007|gb|EDM98281.1| hypothetical protein BACCAP_03941 [Bacteroides capillosus ATCC
29799]
Length = 244
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 92/253 (36%), Gaps = 31/253 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSW-----DKF 75
II G+++ VL + + D + DPPY + + ++ +S
Sbjct: 14 IIHGDALKVLREFAPNTFDAVITDPPYASGGRTQAEKNKSTDKKYSSMGESAPPPFDGDS 73
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
++ + WL R+V KP + + + + LQ + VW K N
Sbjct: 74 KDQRSWTRWAAEWLYDARKVCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTAVWDKGN 133
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P +GR Q A + +N D+ +
Sbjct: 134 SRP-QKGRFRQQAEYIVWG-------------------SNGDMPISRPVPCLPGVFKY-- 171
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++H T+KP L+ ++ T+PG ILDPF GSG++ A S GIE+
Sbjct: 172 -GNPQNRIHLTEKPLQLMRDVVKI-TEPGGRILDPFAGSGSTVLAAVLEGYSATGIEVTD 229
Query: 256 DYIDIATKRIASV 268
Y ++ +RI
Sbjct: 230 AYAALSKERIERE 242
>gi|163732390|ref|ZP_02139836.1| DNA methylase N-4/N-6 [Roseobacter litoralis Och 149]
gi|161394688|gb|EDQ19011.1| DNA methylase N-4/N-6 [Roseobacter litoralis Och 149]
Length = 442
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 100/266 (37%), Gaps = 13/266 (4%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +++ G+++ + +IF DPPYN+ + G + + +
Sbjct: 176 KHRLLCGDALNPADWRALMDQDKAQMIFVDPPYNVPIAGHVSGLGAVKHREFAMASGEM- 234
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S +A+ F R +V + ++ + + + + N +W K+N
Sbjct: 235 SQDAFTDFLRGSFRNLAAFSADGSVHFVCMDWRHMREVLDAAEGIYPELKNLCIWAKTNA 294
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G +++ HE + T + + + RS+ + + R
Sbjct: 295 GM---GSFYRSQHELVFAFK------SGTAPHINNFGLGDKGRHRSNLWTYAGANTFRAG 345
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
D K HPT KP +++ ++ ++ G I+ D F GSGT+ A K R +G+E+
Sbjct: 346 RMDDLKAHPTVKPVDMVADAILDCSERGGIVADAFAGSGTTLLAAAKTGRIGVGMEIDPH 405
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
Y D+ +R+ +
Sbjct: 406 YADLIVRRLQDATGETAVHAESFESF 431
>gi|297519344|ref|ZP_06937730.1| putative methyltransferase [Escherichia coli OP50]
Length = 234
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 19/222 (8%)
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ + + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 1 FIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQ 58
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDA--------------LKAANEDVQMRSDWLI 186
+ + + +E ++ K YTFN DA N +
Sbjct: 59 AKKHYGSMYEPILMMVKDAK--NYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVP 116
Query: 187 PICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
R+R D + HPTQKPEALL RI+++S+ PGDI+LDPF GS T+GAVA
Sbjct: 117 GNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASG 176
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
R FIGIE+ +YI + +R+ EL + ++T R
Sbjct: 177 RKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNR 218
>gi|291521502|emb|CBK79795.1| DNA modification methylase [Coprococcus catus GD/7]
Length = 270
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 32/268 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVT------DSWD 73
+I+ G+++ +++ D + DPPY + R + ++ D
Sbjct: 27 RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 86
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL R+ K + + + I LQ + VW K
Sbjct: 87 DNKDQRSWTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P +GR Q A + M + + G
Sbjct: 147 GNSRP-QKGRFRQQA---------------------EYIVWGSNGPMPINRPVSCLPGVF 184
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R N ++H T+KP L+ ++ +PG +ILDPF G+GT+ A + +GIE+
Sbjct: 185 RYGN-PQNRIHVTEKPLQLMKDVIQIC-EPGGLILDPFAGAGTTILAAAESGFQAVGIEV 242
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTG 281
Y + + R+ G
Sbjct: 243 TDAYYKLGSDRVRIALEAGEEAENKEPQ 270
>gi|162447456|ref|YP_001620588.1| DNA modification methylase [Acholeplasma laidlawii PG-8A]
gi|161985563|gb|ABX81212.1| DNA modification methylase, putative [Acholeplasma laidlawii PG-8A]
Length = 292
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/268 (18%), Positives = 98/268 (36%), Gaps = 35/268 (13%)
Query: 21 DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V + + +DL+F DPPYN+ G + + DK
Sbjct: 45 HRVMCGDSTEKTDVKKLIQDDRIDLVFTDPPYNVDYEGTAGKIMN----------DKMED 94
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
Y F KP G ++V + +N + + ++W K+ +
Sbjct: 95 NTFYL-FLYKAFENMFEHTKPGGAIYVCHADTEGLNFRNAFKNAGYKLAECLIWVKNALV 153
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y + A +D + W +E
Sbjct: 154 LGR------------QDYHWRHEPILYGWREGAAHYFVDDRTQDTIWEYNKPKRNEE--- 198
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP L+ + + +S++ +I+LD F GSG++ + +L+R +E+ + +
Sbjct: 199 ------HPTMKPLELVGKAIANSSRVNEIVLDLFGGSGSTMIASDQLQRRARIMELDERF 252
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTE 285
+D+ KR + + + GK
Sbjct: 253 VDVIVKRYLKYKVSLDDCYLIRNGKEIP 280
>gi|153852763|ref|ZP_01994200.1| hypothetical protein DORLON_00182 [Dorea longicatena DSM 13814]
gi|160894987|ref|ZP_02075761.1| hypothetical protein CLOL250_02537 [Clostridium sp. L2-50]
gi|149754405|gb|EDM64336.1| hypothetical protein DORLON_00182 [Dorea longicatena DSM 13814]
gi|156863418|gb|EDO56849.1| hypothetical protein CLOL250_02537 [Clostridium sp. L2-50]
Length = 273
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 32/268 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVT------DSWD 73
+I+ G+++ +++ D + DPPY + R + ++ D
Sbjct: 30 RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 89
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL R+ K + + + I LQ + VW K
Sbjct: 90 DNKDQRSWTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 149
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P +GR Q A + M + + G
Sbjct: 150 GNSRP-QKGRFRQQA---------------------EYIVWGSNGPMPINRPVSCLPGVF 187
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R N ++H T+KP L+ ++ +PG +ILDPF G+GT+ A + +GIE+
Sbjct: 188 RYGN-PQNRIHVTEKPLQLMKDVIQIC-EPGGLILDPFAGAGTTILAAAESGFQAVGIEV 245
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTG 281
Y + + R+ G
Sbjct: 246 TDAYYKLGSDRVRIALEAGEEAENKEPQ 273
>gi|85717371|ref|ZP_01048322.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85717503|ref|ZP_01048450.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85717707|ref|ZP_01048642.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85695482|gb|EAQ33405.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85695698|gb|EAQ33609.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85695782|gb|EAQ33689.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
Length = 432
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 96/259 (37%), Gaps = 13/259 (5%)
Query: 21 DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V + + ++F DPPYN++++G + + + S
Sbjct: 170 HRLICGDARDPDTVAALMGTEQAQMVFTDPPYNVRIDGNVGGLGSIRHREFAMASGEM-S 228
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F +A R ++ + ++ + + + N IVW K N
Sbjct: 229 EPEFTGFLKASFGNLTRHSIDGSIHYICMDWRHMAEMLNAGDGIYTELKNLIVWAKDNGG 288
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G +++ HE + T + + + R++ + +
Sbjct: 289 M---GTFYRSRHELIFAFK------NGTAPHHNHFELGQHGRHRTNVWEYRGVNTMKAGR 339
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
D LHPT KP A+++ + + G I+LD F GSG++ A K R E Y
Sbjct: 340 LDELALHPTVKPVAMIADAIKDVSSRGGIVLDLFAGSGSTLIAAHKTGRRAYVCEYDPIY 399
Query: 258 IDIATKRIASVQPLGNIEL 276
D +R + ++
Sbjct: 400 CDRIIQRWETYAKDEAEQV 418
>gi|315168838|gb|EFU12855.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX1341]
Length = 398
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/263 (19%), Positives = 99/263 (37%), Gaps = 36/263 (13%)
Query: 20 KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+ +++ G+S I +L + + DL+ DPPYN+ G+ D
Sbjct: 167 RHRLMCGDSTNKAHIELL--MDGEKADLLITDPPYNVNYEGKTEAALKIKNDN------- 217
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ + +F R+ + LK + +V + + L + F + +++W K+
Sbjct: 218 -KTASEFYSFLRSAFSSTYDNLKEGASFYVWYASSEVINFVNSLVDSQFMVKQELIWLKN 276
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + + + HE ++ + + + + D +
Sbjct: 277 SFVLGRQDYHW--QHEPCLYGWKKDGSHRWYGDRKQTTVLDFDKPIA------------- 321
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
K HPT KP L + +S+K GD ILD F GSGT+ ++ R +E+
Sbjct: 322 ------NKEHPTMKPIPLFDYQIKNSSKKGDKILDIFGGSGTTMIACEQNDRQAYLMELD 375
Query: 255 QDYIDIATKRIASVQPLGNIELT 277
Y+D+ R I+L
Sbjct: 376 PKYVDVIINRWEEFTGKEAIKLN 398
>gi|189466780|ref|ZP_03015565.1| hypothetical protein BACINT_03156 [Bacteroides intestinalis DSM
17393]
gi|189435044|gb|EDV04029.1| hypothetical protein BACINT_03156 [Bacteroides intestinalis DSM
17393]
Length = 631
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 52/301 (17%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDA-------- 67
+ II+G +S L K SVDL++ DPP+ + R + + +A
Sbjct: 63 NLIIRGECVSACAYLKDKGISVDLVYIDPPFASGADYAKKVYIRRNPKVAEAMRQAETEL 122
Query: 68 ------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D WDK E Y + L+A + V+ +++V +H +
Sbjct: 123 DVEELKAFEEKMYGDIWDK----ERYLNWMYENLMAIKSVMSDTASIYVHLDWHIGHYVK 178
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA-HETLIWASP-------SPKAKGYTFN 167
++ + P G + N H+T+ W + K T N
Sbjct: 179 VLMDEVFGEDNFVNEIVWCYNGPGSPGMQHFNKKHDTIFWYCKDKQDYIFNDKDIRMTHN 238
Query: 168 YDALKAANED---------------VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
+ + + S + + T+KP L
Sbjct: 239 AKTIDNFKKGLVGSGFISDTYDLNEKGKIPEDWWKYAVASRYPVDGIKRVEYATEKPYPL 298
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ RI+++S+ DI+ D F GSG + R FI ++ + I R+ + +
Sbjct: 299 IERIVLASSNSNDIVADFFGGSGVLSTASHLNNRRFIHCDIGINSIQTVRDRLIAAKAEF 358
Query: 273 N 273
+
Sbjct: 359 D 359
>gi|13542307|ref|NP_111995.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
Length = 681
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 61/331 (18%), Positives = 117/331 (35%), Gaps = 79/331 (23%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAK-----------SVDLIFADPPYNLQLNGQLY-- 58
E+ +++I G+++ ++ L A +DLI+ DPP++ + + +
Sbjct: 77 KTQENNEFLNRLIYGDNLLAMQALLAGDPETGLPSMRGKIDLIYIDPPFDSKADYRTKIH 136
Query: 59 --------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+P A +D+W ++Y L+ R +L G L+V +H
Sbjct: 137 LPSVDIEQKPSVIEQFAYSDTWK--DGTKSYLEMLVPRLVLMRELLSEQGFLYVHIDWHI 194
Query: 111 IFRIGTMLQNLNFW--ILNDIVWRKSNPMPN--FRGRRFQNAHETLIWASPSPKA----- 161
+ ++ ++ N+++ R+ ++ H+T+++ S + A
Sbjct: 195 GHYVKVIIDDIFGKDNFRNEVIVRRIKKNVQEYDTVKQINYGHDTILFYSKNQDARFKPF 254
Query: 162 ---------------------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
Y + N + I +G R G
Sbjct: 255 QRHNERQERWHSFEAAGYRGGMDYELFGFKPRQGNHWRWSKDRADGAIKTGMLRPNPNTG 314
Query: 201 EK--------------------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + T+K E LL IL S+ +I D F GS
Sbjct: 315 KPEYKVEASESEVRDTIWEDITAYSFQFNYQTEKNEDLLDLILEHSSSSNSVIADFFAGS 374
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
GT+GAVA+KL R +I ++ + I KR+
Sbjct: 375 GTTGAVAEKLGRKWIMCDLGKPACMITRKRL 405
>gi|215487725|ref|YP_002330156.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|215265797|emb|CAS10205.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
Length = 246
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 91/253 (35%), Gaps = 27/253 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR---PDHSLVDA--VTDSWDKFS 76
+ G+ + VL L ++ D + DPPY+ + R P V +
Sbjct: 10 TLYCGDVLDVLPAL-SERFDAVITDPPYSSGGTHKSDRSMAPSDKYVGHTQYAEFSGDNR 68
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ ++ W+ R+++P G + V + + + + Q +VW K+
Sbjct: 69 DQRSWAYWSTLWMSGAARLVRPGGYVMVFSDWRQLPTMTDVFQAGGVLWRGLVVWDKT-- 126
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
AS +P + + + + + G R
Sbjct: 127 -----------------QASRAPHTGYFRHQAEYVVWGSNGK-LDKCPHGGPFPGVITQR 168
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
EKLH T KP L++ ++ P +LDPF GSGT+ F GIEM
Sbjct: 169 VVPSEKLHMTAKPVQLMAELVKPLA-PDAHVLDPFMGSGTTAIPVLARGGRFTGIEMTNQ 227
Query: 257 YIDIATKRIASVQ 269
Y DIA R+ Q
Sbjct: 228 YFDIACARLEKAQ 240
>gi|170783555|ref|YP_001740072.1| DNA modification methylase [Arthrobacter sp. Chr15]
gi|150035063|gb|ABR67059.1| DNA modification methylase [Arthrobacter sp. Chr15]
Length = 284
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 61/282 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ +L+++P+++V + PPY + + S +
Sbjct: 26 VLLGDAAQMLDRVPSQTVRSVVTSPPYWSLRDYN-----------HEGQIGRDESLPEFI 74
Query: 83 AFTRAWLLACRRVLKPNGTLWV-IGSYHNI------------------------------ 111
RVL +GTLWV +G +
Sbjct: 75 KSLTVIFDKVSRVLTDDGTLWVNLGDSYTSGNRGYRAPDKKNANRAMSVRPKTPEGLKPK 134
Query: 112 ------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ +Q +++ +DI+W K N P R +HE + S + K Y
Sbjct: 135 DLIGVPWMFAFAMQQAGWYLRSDIIWYKENTQPESVKDRPTRSHEHVFLFSKNEK---YH 191
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
++ DA+K N + K H PE L+ R + ++PGD
Sbjct: 192 YDIDAVKGPNGRR----------LRDVWEINTKGYNGAHFAVYPEELVRRCALIGSEPGD 241
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
ILDPF GSGT+GAVA KL R FIG E+ DY+ + ++R++
Sbjct: 242 YILDPFLGSGTTGAVAHKLGRKFIGCEINADYLPLISERLSD 283
>gi|332653193|ref|ZP_08418938.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
gi|332518339|gb|EGJ47942.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium D16]
Length = 240
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 56/259 (21%), Positives = 96/259 (37%), Gaps = 33/259 (12%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSW-- 72
+W+ II G+++ VL + + D + DPPY + + ++ +S
Sbjct: 3 DKWE--IIHGDALKVLREFAPNTFDAVITDPPYASGGRTQAEKNKSTDKKYSSMGESAPP 60
Query: 73 ---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
++ + WL R+V KP + + + + LQ +
Sbjct: 61 PFDGDSKDQRSWTRWAAEWLYDARKVCKPGAPVCMFIDWRQLPAATDALQWAGWIWRGTA 120
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
VW K N P +GR Q A + +N D+ +
Sbjct: 121 VWDKGNSRP-QKGRFRQQAEYIVWG-------------------SNGDMPISRPVPCLPG 160
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
++H T+KP L+ ++ T+PG ILDPF GSG++ A S
Sbjct: 161 VFKY---GNPQNRIHLTEKPLQLMRDVVKI-TEPGGRILDPFAGSGSTVLAAVLEGYSAT 216
Query: 250 GIEMKQDYIDIATKRIASV 268
GIE+ Y ++ +RIA
Sbjct: 217 GIEVTDAYAALSKERIARE 235
>gi|254441749|ref|ZP_05055242.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
gi|198251827|gb|EDY76142.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
Length = 438
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 96/248 (38%), Gaps = 13/248 (5%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +I G++ + ++F DPPYN+ + G + + ++ +
Sbjct: 170 KHRIFCGDARIADDFAALVADSKAAMVFTDPPYNVPIAGHVSGKGKACHREFHEASGEM- 228
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F L + + ++ + ++ + Q LN VW K+N
Sbjct: 229 TRSDFTTFLDEVLTNTSQRCRDGAISFICMDWRHMGELLEAGQRAFDAYLNLCVWAKTNG 288
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G +++ HE + + + R++ + R
Sbjct: 289 GM---GSLYRSQHELVFVFRKG------KAQHRNNVQLGRFGRNRTNVWTYAGVNTFREG 339
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ HPT KP A++ ++ TK G+++LDPF G G + A++ R G+++
Sbjct: 340 RMEELSAHPTAKPVAMVKDAILDVTKRGEVVLDPFLGGGATLMAAEQSGRVAYGMDIDAA 399
Query: 257 YIDIATKR 264
YID+A +R
Sbjct: 400 YIDVALRR 407
>gi|297583096|ref|YP_003698876.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297141553|gb|ADH98310.1| DNA methylase N-4/N-6 domain protein [Bacillus selenitireducens
MLS10]
Length = 409
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 35/266 (13%)
Query: 20 KDKIIKGNSISV--LEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ K+I G+S E L A + +LI D PYN+ G + + + D+
Sbjct: 165 RHKLICGDSTEAGTYETLMAGEKANLIVTDLPYNVDYEGSAGKIQN------DNMGDQ-- 216
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F L+ ++V + T +++ F+I +W K+ P
Sbjct: 217 ---EFYTFLLKAYQNMFGHLEDGAGIYVFHADRETVNFRTAMKDAGFFIHQTCIWVKNAP 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ N + HE +++ + + N D +SD
Sbjct: 274 VLN--RCDYLYTHEPILYGWKPTAGHKFYGDRKQRTVWNFDRPTKSD------------- 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
LHPT KP AL + + +S+ I+LDPF GSG++ ++ R IE+
Sbjct: 319 ------LHPTMKPVALCAYPIQNSSLSNCIVLDPFGGSGSTMMACEQTNRIARLIELDPK 372
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
Y D+ KR + + + + GK
Sbjct: 373 YADVIVKRYIDFKEITDDVTLIRGGK 398
>gi|150009836|ref|YP_001304579.1| putative DNA-methyltransferase [Parabacteroides distasonis ATCC
8503]
gi|149938260|gb|ABR44957.1| putative DNA-methyltransferase [Parabacteroides distasonis ATCC
8503]
Length = 315
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 44/261 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +++ L+ +P SV L+ DPPYNL+L+ WD SF Y
Sbjct: 40 VYIQDAVKFLKTVPDSSVQLVLIDPPYNLELDY----------------WD---SFPNYL 80
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWILNDIVWRKS 134
+ + W+ R++ NG + G + + + + N N ++N I+W
Sbjct: 81 DWAKQWIDEIYRIMSDNGNCVIFGGFQFQDLKQGDLLEILYYIRHNTNLRLINLIIWYYK 140
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDVQMRSDWLI 186
N M R F N HE IW S + K Y+ ++ ++ +
Sbjct: 141 NGMSAHR--YFANRHEEAIWLSKTKKYYFDLDSVRVPYSEEAKKAALKDKRLRPENIEKG 198
Query: 187 PICSGSERLRNKDGEK----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + +G HPTQKP ++ R++ + + G ++LD F GSGT+G V
Sbjct: 199 KNPTNVWEIGRLNGNSTERVGHPTQKPTEIIRRLVKALSYEGSLVLDFFAGSGTTGRVCI 258
Query: 243 KLRRSFIGIEMKQ---DYIDI 260
+ R I ++ Y ++
Sbjct: 259 EENRHSIMVDSDNSLKRYFEM 279
>gi|254559486|ref|YP_003066581.1| phage methyltransferase [Methylobacterium extorquens DM4]
gi|254266764|emb|CAX22563.1| putative phage methyltransferase [Methylobacterium extorquens DM4]
Length = 494
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 12/241 (4%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
++ ++ ++L L +SV ++F+DPPYN+ ++G + + + S + A
Sbjct: 208 LEADNYAML--LQGESVRMVFSDPPYNVPVSGHVCGSGKVQHREFAMASGEM-SEAEFVA 264
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
F + R L P G +++ + ++F + T + + LN VW K+N G
Sbjct: 265 FLVQAMAHLRERLVPGGLMYLAMDHRHVFELSTAARQIGLEQLNICVWNKTNAGM---GS 321
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+++ HE + A T +V D+ G R+R
Sbjct: 322 FYRSKHELIFVLRKPGAAHLNTVELGRHGRYRTNVW---DYAGVNTFGRHRIRELS---S 375
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP AL+ + T+ G+ +LD F GSGT+ A++ R GIE+ Y+D+A +
Sbjct: 376 HPTVKPVALVIDAIKDCTRRGERVLDAFCGSGTTLIAAERAGRVGYGIELDPVYVDVAVR 435
Query: 264 R 264
R
Sbjct: 436 R 436
>gi|303239110|ref|ZP_07325640.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
CD2]
gi|302593448|gb|EFL63166.1| DNA methylase N-4/N-6 domain protein [Acetivibrio cellulolyticus
CD2]
Length = 419
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 57/285 (20%), Positives = 109/285 (38%), Gaps = 33/285 (11%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
+++ S + N + K +++ G+S VL + K + DPPYN+ G
Sbjct: 149 AEEISNPVTRNGDIWLLGKHRLMCGDSTILQDVLTLMDGKKANTCVTDPPYNVDYTGATK 208
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
DA+ D+ + Y F + VL G ++V +
Sbjct: 209 -------DALKIKNDRLEDGKFY-EFLLSAFKNVFEVLDNGGGIYVFHADTEGLNFRKAF 260
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
++ F + N +W K + + +Q HE +++ + + + N D
Sbjct: 261 KDAGFHLANVCIWVKQSMVLG--RSDYQWQHEPVLYGWKPTGSHKWYSDRKQTTIWNFDR 318
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
++ HPT KP L++ + +S+ I+LDPF GSG++
Sbjct: 319 PSKNVE-------------------HPTMKPVNLVAYPIKNSSLSNCIVLDPFGGSGSTL 359
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKR-IASVQPLGNIELTVLTGK 282
+++L R +E+ + Y D+ KR I + ++ L K
Sbjct: 360 IASEQLGRICNTMELDEKYCDVIVKRFINQAERTDDVFLLRNGSK 404
>gi|118576608|ref|YP_876351.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118195129|gb|ABK78047.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 359
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 56/252 (22%), Positives = 91/252 (36%), Gaps = 26/252 (10%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR--PDHSLVDAVTDSWDKFS- 76
K ++ +S+ KL SVDL+ DPPY + R P + K
Sbjct: 126 KHRMSCADSMVECAKLKDNSVDLLLTDPPYGISSPYATERQIPRRVRKNGGDFIMPKGEF 185
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+D+ AW +K G + ++ I +L F +N +VW K+NP
Sbjct: 186 GEWDHDSDPAAWTKVVLPKIK--GWAVIFCAHVQIKDYTEILSGNGFVAVNALVWHKTNP 243
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+P A + + + S ++R+
Sbjct: 244 VP-------------FNHKFKMLSAWESAVMGKRPSTKFNGKSVHNVFTYKSPSPAQRI- 289
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPTQKP L+ ++ + GD++LDPF GS T+ A R I E
Sbjct: 290 -------HPTQKPLGLMEELIQLMSDKGDLVLDPFGGSATTMIAAMNQNRKSITYENDPK 342
Query: 257 YIDIATKRIASV 268
+A++R+ S
Sbjct: 343 MYKLASQRVKSH 354
>gi|14325741|dbj|BAB60644.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
Length = 703
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 117/338 (34%), Gaps = 79/338 (23%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAK-----------SVDLIFADPPYNLQLNGQLY-- 58
E+ +++I G+++ ++ L A +DLI+ DPP++ + + +
Sbjct: 99 KTQENNEFLNRLIYGDNLLAMQALLAGDPETGLPSMRGKIDLIYIDPPFDSKADYRTKIH 158
Query: 59 --------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+P A +D+W ++Y L+ R +L G L+V +H
Sbjct: 159 LPSVDIEQKPSVIEQFAYSDTWK--DGTKSYLEMLVPRLVLMRELLSEQGFLYVHIDWHI 216
Query: 111 IFRIGTMLQNLNFW--ILNDIVWRKSNPMPN--FRGRRFQNAHETLIWASPSPKA----- 161
+ ++ ++ N+++ R+ ++ H+T+++ S + A
Sbjct: 217 GHYVKVIIDDIFGKDNFRNEVIVRRIKKNVQEYDTVKQINYGHDTILFYSKNQDARFKPF 276
Query: 162 ---------------------KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
Y + N + I +G R G
Sbjct: 277 QRHNERQERWHSFEAAGYRGGMDYELFGFKPRQGNHWRWSKDRADGAIKTGMLRPNPNTG 336
Query: 201 EK--------------------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + T+K E LL IL S+ +I D F GS
Sbjct: 337 KPEYKVEASESEVRDTIWEDITAYSFQFNYQTEKNEDLLDLILEHSSSSNSVIADFFAGS 396
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
GT+GAVA+KL R +I ++ + I KR+
Sbjct: 397 GTTGAVAEKLGRKWIMCDLGKPACMITRKRLIDQDAKP 434
>gi|323485814|ref|ZP_08091149.1| DNA methylase [Clostridium symbiosum WAL-14163]
gi|323400802|gb|EGA93165.1| DNA methylase [Clostridium symbiosum WAL-14163]
Length = 250
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 92/247 (37%), Gaps = 21/247 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I + + L +P S+DLI DPPY ++ R + ++ + +
Sbjct: 19 TIYHQDCLEGLRAIPDASIDLILTDPPYLIKDTHAGGRTRLARTLQPINNELRDNGLVGG 78
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A L RVLK L++ + I + I W K+N P F
Sbjct: 79 LD--PAVLPELVRVLK-TINLYIWCNKAQIPDYLNYFVRELDCSFDIITWVKTNSPPTFH 135
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + L + +V E
Sbjct: 136 NKYLSDKEYCLYFRKGGYCQPTSYETAKTAYFQPTNVL------------------DKKE 177
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPT KP ++ ++ +S+KPGDI+LDPF GSGT+ +L R ++G E+ +Y ++A
Sbjct: 178 YPHPTIKPLNIVKTLIGNSSKPGDIVLDPFLGSGTTAVACTELGRQYLGYELNGEYYEVA 237
Query: 262 TKRIASV 268
+RI
Sbjct: 238 QRRIQDT 244
>gi|309807159|ref|ZP_07701134.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
03V1-b]
gi|308166446|gb|EFO68650.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
03V1-b]
Length = 230
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 92/252 (36%), Gaps = 26/252 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ I + + +L+ LP S+DL+ DPPY ++ G W +
Sbjct: 1 MNSIN-IFNQDCMQMLKDLPKNSIDLVVTDPPYIVKTEG----GGAGAFGYQNRKWHQEI 55
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
F F+ L +V+K + + + L ++ N
Sbjct: 56 EFMTNG-FSNNVLDELCQVMKK----------------INIYIFCSQYQLTQLINYFENK 98
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
N+ + + + Y F ++
Sbjct: 99 KCNWNLISWHKDNPVPSCNNKYLSDTEYIFFAREKGVKLGGTYYTKRKYYVTHINTKEKH 158
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP +++ ++++S+K D+ILDPF GSG++G A KL R FIGIE+K +
Sbjct: 159 QYK----HPTVKPVSIIDNLIINSSKEQDVILDPFMGSGSTGESALKLDRKFIGIEIKPE 214
Query: 257 YIDIATKRIASV 268
Y IA R+
Sbjct: 215 YYQIACSRLKKF 226
>gi|312623436|ref|YP_004025049.1| DNA methylase N-4/N-6 domain-containing protein
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203903|gb|ADQ47230.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 412
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 51/324 (15%), Positives = 106/324 (32%), Gaps = 48/324 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G+S + + ++ +++DLI PPY + V + + Y
Sbjct: 5 KIIIGDSRN-MSEIDNETIDLIITSPPYWHLKDY-----------GVANQIGYGQTLHEY 52
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIVWRKSNP 136
C RVLK L + R + + + +
Sbjct: 53 LKDLYRVWQECFRVLKEGRRLCINIGDQFARSIVYGRYKIIPLHSEIIAQCEDIGFDYMG 112
Query: 137 MPNFRGRRFQNA---------------------HETLIWASPSPKAKGYTFNYDALKAAN 175
++ + N +E ++ K+ +
Sbjct: 113 AIIWQKKTTMNTSGGANVMGSYPYPPNGMIEIDYEFILIFKKHGKSPKVSPEIKEKSVLT 172
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
++ SG + + + H P+ L R++ + GD +LDPF GSG
Sbjct: 173 KE------EWKEYFSGHWYFKGEK-QTEHEAMFPDELPYRLIKMFSFVGDTVLDPFLGSG 225
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL-- 293
T+ VA +L R+ IG E+ D++++ K++ ++ ++ + + P +
Sbjct: 226 TTLKVALELERNGIGYEINPDFLEVINKKLNTINNSFLYKIETIKKETETPEIKAVKYEP 285
Query: 294 -VERGLIQPGQILTNAQGNISATV 316
++ + + N V
Sbjct: 286 RIKDASPIIDPKIIEPKKNQYFKV 309
>gi|13786045|gb|AAK39545.1|AF355462_1 MlyIM [Micrococcus lylae]
Length = 266
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 32/261 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----DKFSSFEAYD 82
+ IS L+ LP SVD++ DP Y +N +L +V D F+ F+ +
Sbjct: 33 DVISFLKSLPDNSVDVLITDPAY-SGMNNKLKLGKGRIVGKYADKGTEQAKWFNEFDDTE 91
Query: 83 AFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+L C+RVL K G ++++ ++ +G L F + N VW K N
Sbjct: 92 ENYHQFLSECKRVLNKQTGHIYLMFDSFSLLTLG-ALVREYFDVKNLXVWDKVNIGM--- 147
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G F+ HE +++A+ N + + S + +R+ N
Sbjct: 148 GHYFRRRHELILFAT------------------NGNTRKVSSRSLHDIWDVKRIHNSK-- 187
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+PTQKP + R+L +S+ PG + DPF GSG++ A K +F+G ++ + ++
Sbjct: 188 --YPTQKPVEVFERMLEASSIPGFTVCDPFLGSGSAALAAIKYDCNFVGCDISEQSFELC 245
Query: 262 TKRIASVQPLGNIELTVLTGK 282
++RI L + K
Sbjct: 246 SERIQQFLDNNVDILEKSSKK 266
>gi|219850185|ref|YP_002464618.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aggregans DSM 9485]
gi|219544444|gb|ACL26182.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
9485]
Length = 345
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 104/303 (34%), Gaps = 67/303 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+S+ +L++LP VDL+ PP+ L D S Y
Sbjct: 26 YLGDSLDLLKRLPDDCVDLVVTSPPFALLRQKAYGNTDQS----------------EYVE 69
Query: 84 FTRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ + RRVL+ G+ + + S + + M + F++ + W
Sbjct: 70 WLCRFGAEVRRVLRETGSFVLDLGGAYQRGVPVRSLYQYRVLLKMCDEVGFYLAEEFFWY 129
Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPK------------AKGYTFNYDALKAA 174
+P N R R +++ T+ W S S ++ A
Sbjct: 130 NPAKLPSPIEWVNKRKIRVKDSVNTVWWFSKSEWPKADVRQVLAPYSERMKTLLKNPDAF 189
Query: 175 NEDVQMRSDWLIPICSGSE----------------------RLRNKDGEKLHPTQKPEAL 212
+ S I GS+ RL G + HP + P AL
Sbjct: 190 YKPKNRPSGHDISKGFGSDNGGAIPSNLLQIPNTESNSSYLRLSKLVGIEAHPARFPAAL 249
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ T GD++LD F GS T+G VA++ R +I +E+ Y+ + R P
Sbjct: 250 PEFFIKLLTTEGDLVLDIFAGSNTTGKVAEQFGRRWIAMEIDAGYVAGSALRFMEHLPQS 309
Query: 273 NIE 275
+
Sbjct: 310 EVA 312
>gi|294340231|emb|CAZ88603.1| Phage related DNA methyltransferase [Thiomonas sp. 3As]
Length = 421
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 53/253 (20%), Positives = 93/253 (36%), Gaps = 34/253 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWDKF 75
+++ G+S +++ VD++F DPPYN+ A+ + D F
Sbjct: 172 HRLLCGDSTVAESYDRVLDGEPVDMVFTDPPYNVNYANSARDKMRGKERAILNDNLGDGF 231
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F A + CR G ++V S + + + + I+W K+
Sbjct: 232 YDFL--LAALTPTIAHCR------GGIYVAMSSSELDVLQSAFRAAGGKWSTFIIWAKNT 283
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ Y + + + D W +
Sbjct: 284 FTLGRA------------DYQRQYEPILYGWPEGSQRHWCGDRDQGDVWN---------I 322
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ LHPT KP L+ R + +S++PG+++LDPF GSGT+ A+K R IE+
Sbjct: 323 KKPQKNDLHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRLARLIELDP 382
Query: 256 DYIDIATKRIASV 268
Y D+ +R
Sbjct: 383 KYADVIVRRWQDW 395
>gi|315924885|ref|ZP_07921102.1| type III restriction-modification system methylation subunit
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621784|gb|EFV01748.1| type III restriction-modification system methylation subunit
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 582
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 66/321 (20%), Positives = 113/321 (35%), Gaps = 66/321 (20%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + E + IIKGN++ L L V ++ DPP+N + Y
Sbjct: 164 EENITFDEKDNLIIKGNNLIALSSLLKRYEGKVKCVYIDPPFNTGSDSFNYN-------- 215
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWI 125
DKF S + F + L +R+L G ++V + + T+ +
Sbjct: 216 -----DKF-SRSTWLVFMKNRLELAKRLLHVTGNIFVHIDINQSHYLKTLCDGIFGEDNF 269
Query: 126 LNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASP-SPKAKGYTFNYDALKAANEDVQMRSD 183
+ +I+W +P N H+ ++ + + K + +D D
Sbjct: 270 VEEIIWAYGSPSGGRAATPKPVNIHDYILHYAKSYSERKQNRVYVPYSEKYIKDWFKYID 329
Query: 184 WLIPICSGSERLRNKDGEKLHP-------------------------------------- 205
+R ++++G +
Sbjct: 330 DDGRKYRRRQRGKDENGNPIWTKQYLDESKGVPLSTVWNDIQQVYADPRAYKDGNKTDVE 389
Query: 206 -------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
QKPEAL+ RIL +T GD++LD G+GTS A A KL R +IG+E + I
Sbjct: 390 VLKEFKGGQKPEALIKRILEMATDEGDLVLDFHIGTGTSAATAHKLNRKYIGVEQMVNQI 449
Query: 259 DIATKRIASVQPLGNIELTVL 279
D+ R+ V ++
Sbjct: 450 DLILPRLQKVIGGDTAGISKF 470
>gi|237737303|ref|ZP_04567784.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
mortiferum ATCC 9817]
gi|229421165|gb|EEO36212.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium
mortiferum ATCC 9817]
Length = 253
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 61/274 (22%), Positives = 101/274 (36%), Gaps = 45/274 (16%)
Query: 16 IFEWKD-KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
I E K+ ++ GN + +++KL VDLI DPPY + W
Sbjct: 4 ILEIKNIQLYNGNCLEIMDKLIEAGIKVDLIITDPPY----------------QKTKNKW 47
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D F+ L R K N + + G IF +L N + + I +
Sbjct: 48 DYVIPFDD----MWNRLKKLR---KDNTPIILFG--QGIFSAKLILSNEEEYRYSLIWNK 98
Query: 133 KSNPMPNFRGRRFQNAHETLIWASP-------------SPKAKGYTFNYDALKAANEDVQ 179
+ + ++HE ++ + G T N +Q
Sbjct: 99 EHPSGFLNANKMPLSSHEDILVFYKKLPIYNPQKFKGKQNNSTGNTIAPKINNNYNNFIQ 158
Query: 180 MRSDWLIPICSGSERL----RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ + + +HPTQKP LL ++ + + ++LD GSG
Sbjct: 159 EDNSKKYGDMKFPRSILNFKKPHPSVMVHPTQKPVELLEYLIKTYSNEKSLVLDFTMGSG 218
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++G K L R+FIGIE+ +DY +A R+ V
Sbjct: 219 STGIACKNLNRNFIGIEIDKDYFKLAINRLEVVN 252
>gi|295093174|emb|CBK82265.1| DNA modification methylase [Coprococcus sp. ART55/1]
Length = 270
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 32/268 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVT------DSWD 73
+I+ G+++ +++ D + DPPY + R + ++ D
Sbjct: 27 RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 86
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL R+ K + + + I LQ + VW K
Sbjct: 87 DNKDQRSWTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P +GR Q A + M + + G
Sbjct: 147 GNSRP-QKGRFRQQA---------------------EYIVWGSNGPMPINRPVSCLPGVF 184
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R N ++H T+KP L+ ++ +PG +ILDPF G+GT+ A + +GIE+
Sbjct: 185 RYGN-PQNRIHVTEKPLQLMKDVIQIC-EPGGLILDPFAGAGTTILAATESGYQAVGIEV 242
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTG 281
Y + + R+ G
Sbjct: 243 TDAYYKLGSDRVRIALEAGAEAENKEPQ 270
>gi|307943752|ref|ZP_07659096.1| DNA methylase [Roseibium sp. TrichSKD4]
gi|307773382|gb|EFO32599.1| DNA methylase [Roseibium sp. TrichSKD4]
Length = 373
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 99/349 (28%), Gaps = 109/349 (31%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ + +L LP +SVD + PPY + V + +
Sbjct: 14 LHVGDVLEMLATLPDESVDCVVTSPPYWGLRDY-----------GVEGQIGLEPTLAEHI 62
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHN-------------------------------- 110
A A RRVLKP GTLW+
Sbjct: 63 ALMVAVFEEVRRVLKPTGTLWLNYGDCYASSPNGRSAADTKAEGNDNRTFRDKPFSTVQG 122
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
R+ LQ +W+ ++I+W K NPMP R AHE + S S K
Sbjct: 123 VLKPKDLCMIPNRLAIALQEAGWWVRSEIIWAKPNPMPESIRDRPATAHEKIFLLSKSAK 182
Query: 161 AKGYTFNYDALKAANEDVQMRSDW-------LIPICSGSERLRNKD------GEKLHP-- 205
Y N + W + R ++ + + H
Sbjct: 183 -YFYDANAVRQGQHKVSKHTVAGWASGPGAHDTIKHNRGSRSKDTNSSASPPNSRPHSLS 241
Query: 206 ----------------------------------------TQKPEALLSRILVSSTKPGD 225
P AL R + + G
Sbjct: 242 EFEARHNADYPGRNLRNWEPEAAQPDVWKIATSPFPGAHFATFPLALAQRCVKAGCPKGG 301
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
++LDPF G+GT+ A IE+ +Y IA +RI +
Sbjct: 302 VVLDPFGGAGTTAIAALAHGCQAQLIEINPEYARIAGERIEQCFMGPDE 350
>gi|218961788|ref|YP_001741563.1| putative Modification methylase BamHII (N-4 cytosine-specific
methyltransferase BamHII) (M.BamHII) [Candidatus
Cloacamonas acidaminovorans]
gi|167730445|emb|CAO81357.1| putative Modification methylase BamHII (N-4 cytosine-specific
methyltransferase BamHII) (M.BamHII) [Candidatus
Cloacamonas acidaminovorans]
Length = 273
Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 55/272 (20%), Positives = 93/272 (34%), Gaps = 23/272 (8%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG------------QLYRPDHSLVDAV 68
+ I + + + L+KLP +DL + PPY+ + +LYR AV
Sbjct: 8 NDIYQTDCVEGLKKLPENCIDLCVSSPPYDGIRDYHGFSLDLHNVGIELYRVMKEGGIAV 67
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
D+ +F R + C L+ Y G +
Sbjct: 68 MVMQDQTRNFAKSLTTFRTAIDWCDNA---GFRLFETLIYRKYGAEGGWWKTRFRVDHEF 124
Query: 129 IVWRKSNPMPNFRGRRF---QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
++ P + + + H + NE + W
Sbjct: 125 MLVFLKGQRPQYFDKEPLKIPSKHGGKTLTGGGTRLTNGIRIPTRPILINEMKCRGTVWE 184
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
RL++K HP P+ L + P I+LD F GSGT+ A +L
Sbjct: 185 YLTAGDGSRLKHK-----HPATFPDKLPYDFIQCFCPPEGIVLDIFMGSGTTALAAIELN 239
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
R+F+G E+ ++Y+ +A +RIA +L
Sbjct: 240 RNFLGFEISEEYVKLAKQRIAIEGKKDEDQLM 271
>gi|325107355|ref|YP_004268423.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
5305]
gi|324967623|gb|ADY58401.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
5305]
Length = 625
Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 67/309 (21%), Positives = 109/309 (35%), Gaps = 42/309 (13%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--DHSLVDAVTDSWDKFS- 76
++ I+ G+ ++ ++ LP+ SVDLIFADPP+N+ +Y+ A + W + +
Sbjct: 9 RNTILPGDCVAGMQSLPSGSVDLIFADPPFNIGYEYDVYKDVLAGDQYVAWSKDWMQAAY 68
Query: 77 -----SFEAYDAFTRAWLLACRRVLKPNGTL---WVIGSY-------HNIFRIGTMLQNL 121
+ A + + + G WVI Y R L
Sbjct: 69 DCLKPDGTFWLAIGDEYAAELKVTAREIGFHMRSWVIWYYTFGVNCRRKFSRSHAHLFYF 128
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------ 175
R+ + A P A
Sbjct: 129 VKNADEFTFLDDEPANRIPSARQLVYNDKRANPAGRLPDDTWIISPDTAEGELQLPDSIV 188
Query: 176 ---------EDVQMRSDWLIPICSGSE-------RLRNKDGEKL--HPTQKPEALLSRIL 217
E + C +E R+ E+ H Q PE LL RI+
Sbjct: 189 QELREGMPGEQTWTLRPQDLESCFQAEEDTWYFPRVAGTFKERAGFHGCQMPEQLLGRIV 248
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
S ++PG+++LDPF GS T+ AVAKKL R+++G E+ +DY+ R+ V+ +E
Sbjct: 249 RSCSRPGELVLDPFSGSATTLAVAKKLNRNYLGFELSEDYVAHGLARLDGVRVGDRLEGA 308
Query: 278 VLTGKRTEP 286
Sbjct: 309 AEPLMSAPK 317
>gi|159030769|emb|CAO88447.1| cfrBIM [Microcystis aeruginosa PCC 7806]
Length = 390
Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 65/291 (22%), Positives = 104/291 (35%), Gaps = 41/291 (14%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ + + ++ I G+ +LE++PA+SVDLIF PPY RP++S +
Sbjct: 105 KKEYKLSSLRNTIGFGDCSELLEEMPAESVDLIFTSPPYF------NARPEYSEFEEYES 158
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------------IG 115
K R + C RVL + S + R +
Sbjct: 159 YLLK----------LRQVIRKCHRVLSEGRFFVINISPVLLRRASRNQASKRIAVPFDLH 208
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ + ++DI+W K GR + A + + Y Y
Sbjct: 209 RIFIEEGYDFIDDIIWLKPEGAGWATGRGRRFAADRNPLQYKTVPVTEYVLVYRKHTDLL 268
Query: 176 EDVQMRSDWLIPIC------SGSERLR----NKDGEKLHPTQKPEALLSRILVSSTKPGD 225
D +R+ + G ER N HP P L +++ + GD
Sbjct: 269 IDWHIRNHPAQEVVKASKIADGYERTNVWKINPVTNSKHPAAFPVELAEKVITYYSFKGD 328
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
++LDPF GSGT G A L R F+ E +YI++ K I +
Sbjct: 329 VVLDPFAGSGTVGLAAASLDRRFVLFESNFNYIELIRKLITEGNQTDLDSI 379
>gi|320449664|ref|YP_004201760.1| DNA methylase [Thermus scotoductus SA-01]
gi|320149833|gb|ADW21211.1| DNA methylase [Thermus scotoductus SA-01]
Length = 319
Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 54/272 (19%), Positives = 87/272 (31%), Gaps = 31/272 (11%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
G++ VL + P SV L+ PPY + V +EA+
Sbjct: 55 GDARKVLAEFPEASVHLVLTSPPYWTLKRYE----------DVPGQMAHIEDYEAFLDEL 104
Query: 86 RAWLLACRRVLKPNGTLWVIGSY------HNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
R+L P G L ++ + L + + NP+
Sbjct: 105 DRVWREAFRLLVPGGRLIIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPILW 164
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
++ E P G + + P RL +D
Sbjct: 165 YKRTNASLEVEGRGVFLGKPYEPGAIIKTEVEYILMQRKPGGYRRPSPEAREKSRLSKED 224
Query: 200 ---------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+LHP P L R++ + GD +LDPF G+GT+ A K
Sbjct: 225 FHRFFRQIWEDIPGESTRLHPAPFPLELAERLVRMFSFVGDTVLDPFAGTGTTLVAAAKW 284
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
R +G+E+ Y +A +R A P +E+
Sbjct: 285 GRRALGVELVPGYAALARERFAREVPGEMLEV 316
>gi|158520956|ref|YP_001528826.1| DNA methylase N-4/N-6 domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158509782|gb|ABW66749.1| DNA methylase N-4/N-6 domain protein [Desulfococcus oleovorans
Hxd3]
Length = 301
Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 58/258 (22%), Positives = 97/258 (37%), Gaps = 27/258 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I V+ + ++SVD IFADPP+NL D+ + + Y
Sbjct: 46 LYNDDIIKVIPYVHSESVDTIFADPPFNLSKIYGNNVNDN-------------LTEKEYL 92
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
++ + WL C RVLKP G +++ +G L + I +P
Sbjct: 93 SWCKTWLDQCIRVLKPGGAIFIYNLPKWNIILGNHLSEAGMTFRHWIAVDIKLSLPIPGR 152
Query: 143 RRFQN-AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-------- 193
+ + P + T E +G
Sbjct: 153 LYPSHYSMLYYTKGKPKTFRRVRTPIEVCRHCGKEIKDYGGHRRAMNPNGVNLTDVWHDI 212
Query: 194 ---RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
R + Q LL R++ ST+ DI+LDPF GSGT+ V ++L+R +IG
Sbjct: 213 TPVRHWKFKSRRRSANQLSTKLLERVIQLSTQEYDIVLDPFGGSGTTYDVCERLQRHWIG 272
Query: 251 IEMKQDYIDIATKRIASV 268
IE+ + D+ +R+ +
Sbjct: 273 IEI--ESCDVIIERLQTE 288
>gi|163932178|ref|YP_001642368.1| putative adenine methyltransferase [Lactobacillus johnsonii
prophage Lj771]
gi|163562132|gb|ABY26988.1| putative adenine methyltransferase [Lactobacillus johnsonii
prophage Lj771]
Length = 283
Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats.
Identities = 53/249 (21%), Positives = 95/249 (38%), Gaps = 25/249 (10%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLN-GQLYRPDHSLVDAVTDSWDKF 75
+ +++ G+S ++KL DL+ DPPYN+ + R S D +
Sbjct: 42 RHRLMCGDSTKPEDVKKLMNGVQADLLITDPPYNVDYSSKDFGRTKMSKTRKNNDIANDK 101
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
E + F +K + ++ S + + + ++W K+N
Sbjct: 102 MENEQFMQFLVQAFSNASVNMKLGASFYIWFSDLATVQFNEAAKESGLNVKETLIWVKNN 161
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + +Q+ HE ++ + + + N D RSD
Sbjct: 162 FVLG--RQDYQHKHEPCLYGWVDGGSHSWYSDRKQTTILNFDKPQRSD------------ 207
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
LHPT KP L + +S+K GDI+LD F GSGT+ ++ R+ +E
Sbjct: 208 -------LHPTMKPIPLFDYQIKNSSKSGDIVLDLFGGSGTTLMACEQDGRNAYLMEFDP 260
Query: 256 DYIDIATKR 264
Y+D+ R
Sbjct: 261 RYVDVIIDR 269
>gi|309781002|ref|ZP_07675741.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
5_7_47FAA]
gi|330824601|ref|YP_004387904.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
denitrificans K601]
gi|308920305|gb|EFP65963.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
5_7_47FAA]
gi|329309973|gb|AEB84388.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
K601]
Length = 420
Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 93/249 (37%), Gaps = 34/249 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWDKF 75
+++ G+S + L +V D++F DPPYN+ A+ + D F
Sbjct: 171 HRLLCGDSTVAESYDHLMQGAVADMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLGDAF 230
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F A + CR G ++V S + + + I+W K+
Sbjct: 231 YDFL--LAALTPTVAHCR------GGIYVAMSSSELDVLQAAFRAAGGKWSTFIIWAKNT 282
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ Y + A + D W +
Sbjct: 283 FTLGRA------------DYQRQYEPILYGWPEGATRHWCGDRDQGDVWN---------I 321
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ LHPT KP L+ R + +S++PG+++LDPF GSGT+ A+K R IE+
Sbjct: 322 KKPQKNDLHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDP 381
Query: 256 DYIDIATKR 264
Y+D+ +R
Sbjct: 382 KYVDVIVRR 390
>gi|196231519|ref|ZP_03130377.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
Ellin428]
gi|196224372|gb|EDY18884.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
Ellin428]
Length = 276
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/273 (19%), Positives = 93/273 (34%), Gaps = 44/273 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +S + L A SVD++ PPYNL ++ +R D S E Y
Sbjct: 12 LHHGDCVSGMADLDADSVDVVVTSPPYNLDIDYATFRDDASR--------------EDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY---------------HNIFRIGTMLQNLN---FW 124
++ W R+LKP+G+ ++ +FR+ + +
Sbjct: 58 EWSVRWATEVHRLLKPDGSFFLNVGASPANPLLPHQLVLALQPLFRLQNTIHWIKSVTVQ 117
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK----------AKGYTFNYDALKAA 174
+ P R + HE + + A N
Sbjct: 118 PRRAPELSVGHFKPINSRRYITDCHEYVFHLTHKGDVPIDRLAVGVAYADKSNIARWAHT 177
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFG 233
+ R E ++++D ++ HP P L + + G + LDPF G
Sbjct: 178 RGVKRDRRCRGNNWFISYETIQHRDRQRPHPATFPTKLAEMCFRLHGAREGLVGLDPFLG 237
Query: 234 SGTSGAVAKKLR-RSFIGIEMKQDYIDIATKRI 265
G + + A FIG E+ + Y+ A R+
Sbjct: 238 IGHAASAAATCGLERFIGFEIDEGYLTEARSRL 270
>gi|22299421|ref|NP_682668.1| DNA-methyltransferase [Thermosynechococcus elongatus BP-1]
gi|22295604|dbj|BAC09430.1| DNA-methyltransferase [Thermosynechococcus elongatus BP-1]
Length = 292
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/279 (22%), Positives = 106/279 (37%), Gaps = 57/279 (20%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
G+ V+ ++P +++ LIF PPYNL + E Y
Sbjct: 5 GDICEVVRQVPDEAMTLIFTSPPYNLGKAYETPVA-----------------IEDYLQSQ 47
Query: 86 RAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
A + RVL+P G+L Y + + L + N I+W+ + +
Sbjct: 48 SAVIAELYRVLRPEGSLCWQVGNFVQRGEVYPLDILFYPLFKRLGLKLRNRIIWKFGHGL 107
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA------------LKAANEDVQMRS--- 182
+RF +ET++W + + Y FN DA K N+ +
Sbjct: 108 --HATKRFSGRYETILWFTK---SDEYIFNLDAVRIPAKYPGKRHFKGPNKGKPSGNPLG 162
Query: 183 ------------DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
DW + N + LHP Q P L+ R +++ + GD + DP
Sbjct: 163 KNPSDVWEVVVQDWQELVWDIPNVKSNHPEKTLHPCQFPIELVERCVLALSHEGDWVFDP 222
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ G G+S A R +G E + Y++IA +RI + +
Sbjct: 223 YMGVGSSLLAALMHNRRAMGCEKEPAYVNIARQRIQAYE 261
>gi|311977254|gb|ADQ20507.1| M.BsaJI [Geobacillus stearothermophilus]
Length = 437
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/295 (20%), Positives = 102/295 (34%), Gaps = 48/295 (16%)
Query: 3 QKNSLAINENQNSIF---EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
NS + ++ E+ +KII G+++ +L + S+ L F PPY + +Y
Sbjct: 147 FPNSFDFDTKKDHSIVKKEYMNKIINGDALKILRSVENNSIHLTFTSPPYYNARDYSIY- 205
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-- 117
SS+E Y F RV K L V S I R+G
Sbjct: 206 ----------------SSYEEYLDFLEEVFSEVYRVTKDGRFLIVNTSPIIIPRVGRKYS 249
Query: 118 -------------LQNLNFWILNDIVWRKSNPMPNFRG----------RRFQNAHETLIW 154
L + ++DI+W K R NA +
Sbjct: 250 SKRYPIPYDLHGRLVKQGWEFIDDIIWVKPEASVKNRIGGFQQFRKPLMYKPNAVTEQLM 309
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
+ +N A ++V S L + + + +K+H P+ L
Sbjct: 310 VYRKKSNRLIDWNIRAY---EDEVVEASKVLTDFETTNVWEIDPVYDKVHSAVFPKKLCD 366
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++ + GD++ DPF GSGT A L R E+ ++Y + + ++
Sbjct: 367 NVVKYYSMKGDLVFDPFVGSGTLAKSALSLERKVFMTEISKEYFERIMENLSDYA 421
>gi|296394780|ref|YP_003659664.1| DNA methylase N-4/N-6 domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296181927|gb|ADG98833.1| DNA methylase N-4/N-6 domain protein [Segniliparus rotundus DSM
44985]
Length = 277
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/253 (18%), Positives = 84/253 (33%), Gaps = 30/253 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD---------HSLVDAVTDSWD 73
+++G++I++L LP S D + DPPY+ Q R A+
Sbjct: 31 LVRGDAIALLRSLPDGSADAVVTDPPYSSGGGTQAERNKAPNQKYPQSGHSGQALPGFAG 90
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ F +L R + G V + I LQ + I W K
Sbjct: 91 DNKDQYSHLVFQHLFLAEALRATRAAGACVVFTDWRQIHTAVIALQTAGWVYRGVIPWAK 150
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N P A+ + + + P+
Sbjct: 151 KNARP--------------------INARSFRHGCEYAVWGTNGPHDQIGHCTPLAGFVH 190
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+++H QKP ++ ++ + +++DPF GSG +G A R F+G E
Sbjct: 191 ASAPAPNKRVHVNQKPPEVMEHLVQIA-PENGLVVDPFAGSGATGIAALAQGRRFLGCEH 249
Query: 254 KQDYIDIATKRIA 266
D A +R+
Sbjct: 250 SPDIARTAAQRLQ 262
>gi|42557717|emb|CAF28692.1| putative type II DNA modification methylase [uncultured
crenarchaeote]
Length = 289
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/285 (20%), Positives = 101/285 (35%), Gaps = 21/285 (7%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+++ I G+ ++LEKLPA S+ L PPY ++ ++ + T S
Sbjct: 6 FENSIQTGDCKNILEKLPADSIQLTITSPPYRNAIDYSMHVEGNGYYRGTTRI-----ST 60
Query: 79 EAYDAFTRAWLLA-CRRVLKPNGTLWVIGSYHNI---------FRIGTMLQNLNFWILND 128
Y RV + G ++ + + ++Q W L++
Sbjct: 61 TEYLNDMIEIFNNHVFRVTREGGYCCIVIGNEVVNGSILPLPHMLLSNLVQPFGNWSLHE 120
Query: 129 -IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWL 185
I+W K N G N + A+ + N + + +D
Sbjct: 121 EIIWHKVTGGTNRYGSFVINPYPKYFRANIMHEFILVLRKGNVKSGRTQRDDALPAKHEE 180
Query: 186 IPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G HP PE + R++ + GD+ILDPF GSG + VA
Sbjct: 181 FTKEIANSVWHIAPVPPGFINHPCPFPEEIPYRLMKLYSYEGDVILDPFNGSGQTTKVAH 240
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
R +IGI++ +Y +A R+ E + ++
Sbjct: 241 HFLRGYIGIDIINEYAKLAKGRLHDEPLHIRTEALIAKWQKIPSH 285
>gi|167630911|ref|YP_001681410.1| DNA methylase, family protein [Heliobacterium modesticaldum Ice1]
gi|167593651|gb|ABZ85399.1| DNA methylase, family protein [Heliobacterium modesticaldum Ice1]
Length = 417
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 103/266 (38%), Gaps = 28/266 (10%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S + V + + K V +F DPP+N+ P + D
Sbjct: 168 RHRLMCGDSALLLDVQKLMDGKKVRFVFTDPPWNVDYGSDTRHPSWKPRQILNDR----M 223
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E + AF R V + +V+ S + +L+ + + I+W+K +
Sbjct: 224 STEEFGAFLSRAFNCMREVSEAGCMTYVVMSAQEWGSLMNVLREAGYHWSSTIIWKKDSL 283
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + + Y + +D + W IP SE
Sbjct: 284 VLSRK------------DYHTQYEPIWYGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE-- 329
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP +L+++ +++S+ GD+ LD F GSGT+ A++ R +E+
Sbjct: 330 -------HPTMKPVSLVAKAMLNSSHAGDLALDLFGGSGTTMIAAEQTGRVCFMMELDPK 382
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
Y D+ KR S L K
Sbjct: 383 YCDVIAKRYVSQFGDNAAFLLRGDEK 408
>gi|253991419|ref|YP_003042775.1| hypothetical protein PAU_03946 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782869|emb|CAQ86034.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 417
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/274 (20%), Positives = 104/274 (37%), Gaps = 32/274 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ +++ + + + +VD++FADPP+NL D+ E Y
Sbjct: 117 TLYHGDCLNISKVIQSDTVDMVFADPPFNLDKLYPSKMDDNLKE-------------EEY 163
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+T WL C R+LKP G ++ ++ + +
Sbjct: 164 IKWTHRWLDECIRILKPGGAFFLWNLP--VWNSKIASFLHGRLNFKHWIAVDMKNNMPIQ 221
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNY-------------DALKAANEDVQMRSDWLIPI 188
GR + +H +L++ KA + + + L +
Sbjct: 222 GRLYP-SHYSLLYFIKGEKANTFEPDRLPVQTCPKCFGDLKDYGGYKSKMNPLGINLTDV 280
Query: 189 CSGSERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+R+K +K + + +L R++ STK GD+I DPF GSGT+ +A+ R
Sbjct: 281 WYDIPPVRHKKYKKRNGANELSIKVLDRVIEMSTKEGDLIFDPFGGSGTTYVIAEIKNRK 340
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
+IG E+ DI +R ++ + +
Sbjct: 341 WIGSEIDN--CDIIKERFDNISEDKEHLVNIRDK 372
>gi|167821700|ref|ZP_02453380.1| site-specific DNA methyltransferase [Burkholderia pseudomallei 91]
Length = 235
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 91/247 (36%), Gaps = 32/247 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWDKFSSF 78
+++++ LP S+D++F DPPY+ R + TD
Sbjct: 2 DALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTVYTDFESDNMDQ 61
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ + AWL CRR LKP G L + + + ++Q + VW K+
Sbjct: 62 RAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPGRT 121
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
R F E ++WAS MR + RL
Sbjct: 122 RPRRGGFAQQAEFVVWASRGA--------------------MRDCEVYLPGVFPCRL--- 158
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
K H T+KP + ++ G ++ D F GSGT A A++ +IG E Y
Sbjct: 159 PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGLHWIGCETNAAYH 217
Query: 259 DIATKRI 265
IA R+
Sbjct: 218 AIALHRL 224
>gi|84684775|ref|ZP_01012675.1| prophage LambdaMc01, DNA methyltransferase [Maritimibacter
alkaliphilus HTCC2654]
gi|84667110|gb|EAQ13580.1| prophage LambdaMc01, DNA methyltransferase [Rhodobacterales
bacterium HTCC2654]
Length = 433
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/270 (19%), Positives = 99/270 (36%), Gaps = 15/270 (5%)
Query: 20 KDKIIKGNSIS--VLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+++ V+ L A V ++F+DPPYN+ ++G + + V +
Sbjct: 169 RHRLMCGDALDPVVVGDLMAGEVARMVFSDPPYNVPIDG--HVGNSGKVQHREFAMASGE 226
Query: 77 -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
S EA+ F L ++ + ++ + + + + N IVW K N
Sbjct: 227 MSSEAFTGFLTTALGNMADHAVEGSIHFLCMDWRHMGEMLAAGEAIYDELKNLIVWAKDN 286
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
G +++ HE + TF +V E L
Sbjct: 287 GGM---GTFYRSRHELIFAFKNGTAPHVNTFELGQHGRYRTNVWQYRGVNTLRAGRMEEL 343
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
LHPT KP +++ + + G+I+LD F GSG++ A+K R E+
Sbjct: 344 A------LHPTVKPVQMIADAIRDVSGRGEIVLDLFGGSGSTLIAAQKTGRRGYLCELDP 397
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTE 285
Y D R + ++
Sbjct: 398 IYCDRIVARWEAYAKDEAEQVVCGWSAPAA 427
>gi|300940961|ref|ZP_07155485.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
gi|284922568|emb|CBG35655.1| putative DNA methyltransferase [Escherichia coli 042]
gi|300454285|gb|EFK17778.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
Length = 321
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/329 (20%), Positives = 114/329 (34%), Gaps = 78/329 (23%)
Query: 1 MSQKNSLAINENQNSIFEW--KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
S K + + N + + I +S+ V++ +P SV+L+F PPY L +
Sbjct: 9 FSSKEKNSTTKLVNGFEPFYESNLGSIFHADSLDVMKSIPDNSVNLVFTSPPYALHFKKE 68
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRI 114
+ Y + + +R+L +G+ + GS++
Sbjct: 69 YGNVCQ----------------KDYVEWFVDFAKEIKRILTEDGSFVLNIGGSWNPGEPT 112
Query: 115 GTMLQNL---------NFWILNDIVWRKSNPMP------NFRGRRFQNAHETLIWASPSP 159
++ F + + W MP + R +++ E + W S P
Sbjct: 113 RSIYHFKLVIALVEEVGFRLAQETFWYNPAKMPVPAQWVTVKRVRVKDSVEYVFWFSKGP 172
Query: 160 KAK-----------------------------GYTFNYDALKAANEDVQMRSDWLIPICS 190
K G+ N K N + S
Sbjct: 173 HPKASNKKVLRPYSKDMLRLAAKGVKTTVRPSGHNINESFDKTHNGGSIPPNFIDDETPS 232
Query: 191 GSERLRNK------------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
++ N +G K+HP + P L + T GD++LDPF GS T+G
Sbjct: 233 DVLKMGNNAANDVYTKKCKANGIKIHPARFPMQLPEFFIKMLTDEGDLVLDPFGGSMTAG 292
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
AVA+ L R +IGI+ ++Y+D A R
Sbjct: 293 AVAESLNRRWIGIDTVEEYLDGALYRFEE 321
>gi|194335796|ref|YP_002017590.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308273|gb|ACF42973.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 416
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/259 (20%), Positives = 85/259 (32%), Gaps = 30/259 (11%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ LP +SV L+ PPY + + S+E+Y
Sbjct: 1 MNLLPGRSVHLVVTSPPYWQLKDY-----------GTDNQIGFHESYESYINNLNLVWNE 49
Query: 92 CRRVLKPNGTLWVIGSYH-----NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
C RVL P L + R + + + ++
Sbjct: 50 CERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIKFCETIGFDYMGAVIWQKVTTT 109
Query: 147 NAHETLIWASPSPKAKG------------YTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N P + + DA K E + + +
Sbjct: 110 NTTGGASIMGSFPYPRNGILKIDYEFILIFKKQGDAPKPTKEQKERSAMTTEEWNTYFSG 169
Query: 195 LRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
N G K H PE L R++ GD +LDPF GSGT+ AK L R+ +G E
Sbjct: 170 HWNFAGAKQEGHLAMFPEELPHRLIKMFAFRGDTVLDPFMGSGTTSLAAKNLERNSVGYE 229
Query: 253 MKQDYIDIATKRIASVQPL 271
+ ++I+IA +++ + QP
Sbjct: 230 INPEFIEIARQKLNTKQPD 248
>gi|312128656|ref|YP_003993530.1| DNA methylase N-4/N-6 domain-containing protein
[Caldicellulosiruptor hydrothermalis 108]
gi|311778675|gb|ADQ08161.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 412
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/324 (16%), Positives = 106/324 (32%), Gaps = 48/324 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G+S + + ++ +++DLI PPY + V + + Y
Sbjct: 5 KIIIGDSRN-MSEIDNETIDLIITSPPYWHLKDY-----------GVANQIGYGQTLHEY 52
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIVWRKSNP 136
C RVLK L + R + + + +
Sbjct: 53 LKDLYRVWQECFRVLKEGRRLCINIGDQFARSIVYGRYKIIPLHSEIIAQCEDIGFDYMG 112
Query: 137 MPNFRGRRFQNA---------------------HETLIWASPSPKAKGYTFNYDALKAAN 175
++ + N +E ++ K+
Sbjct: 113 AIIWQKKTTMNTSGGANVMGSYPYPPNGMIEIDYEFILIFKKPGKSPKV------SPEIK 166
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
E + + SG + + + H P+ L R++ + GD +LDPF GSG
Sbjct: 167 EKSILTKEEWKEYFSGHWYFKGEK-QTEHEAMFPDELPYRLIKMFSFVGDTVLDPFLGSG 225
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL-- 293
T+ VA +L R+ IG E+ D++++ K++ ++ ++ + + P +
Sbjct: 226 TTLKVALELERNGIGYEINPDFLEVINKKLNTINNSFLYKIETIKKEIETPEIKAVKYEP 285
Query: 294 -VERGLIQPGQILTNAQGNISATV 316
++ + + N V
Sbjct: 286 RIKDASPIIDPKIIEPKKNQYFKV 309
>gi|110004439|emb|CAK98777.1| putative adenine specific dna methyltransferase protein
[Spiroplasma citri]
Length = 243
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 23/251 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLV-DAVTDSWDKFSSF 78
K+I G+++ ++ L SVDLI DPPY NL + + S + ++ +
Sbjct: 8 KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+++F L + N + + + I I + +L D +
Sbjct: 68 NLHNSFDINTYLDEFYRISKNKFMLIWMNRQQI--IDYLDWVRKKDMLYDFILWNKTNPM 125
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+Q+ +I S + Y +Y++ K G + R
Sbjct: 126 PTNNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKTI-----------FNYSIGKKLTR-- 172
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPT+KP + +R++ +K D+ILD F GSGT+ ++L+R ++G E+ +Y
Sbjct: 173 -----HPTEKPLYIFNRLISKYSKENDLILDCFMGSGTTAYACEQLKRKWLGCEINNEYY 227
Query: 259 DIATKRIASVQ 269
I KR+ +Q
Sbjct: 228 KIIKKRLKDIQ 238
>gi|17233429|ref|NP_490548.1| putative methylase [Salmonella typhimurium LT2]
gi|167995157|ref|ZP_02576247.1| DNA methylase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261888742|ref|YP_003264431.1| putative methylase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|305696893|ref|YP_003864208.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16445250|gb|AAL23468.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205327122|gb|EDZ13886.1| DNA methylase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261857330|emb|CBA11403.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|267990094|gb|ACY86491.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|304376195|dbj|BAJ15357.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|312915779|dbj|BAJ39752.1| putative methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|323132992|gb|ADX20421.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332991469|gb|AEF10451.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 226
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 41/252 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I GN + ++ P ++VD I DPPY + R S+ TD W
Sbjct: 3 RLILGNCVDIMSGFPERAVDFILTDPPYLVGFRD---RSGRSIAGDRTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + L ++ + R ++ F ++ +V+ K+ +
Sbjct: 51 ---LQPACNQMYRVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 SAYVGYRHECAYVLAKGRPALPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T I+LDPF GS ++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHTNAIVLDPFAGSASTCVAALQAGRRYIGIELMEQYHKAG 201
Query: 262 TKRIASVQPLGN 273
+R+ +VQ
Sbjct: 202 IERLTAVQRAMQ 213
>gi|332305440|ref|YP_004433291.1| DNA methylase N-4/N-6 domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172769|gb|AEE22023.1| DNA methylase N-4/N-6 domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 218
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 100/249 (40%), Gaps = 37/249 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ + +++ L+ LPA SVDL+ DPPY + G R HS ++ W
Sbjct: 2 RLFQLDAVEWLQSLPANSVDLVITDPPYESLEKHRAKGTTTRLKHSKSS--SNDWFAIFP 59
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ A + RVLK N ++ +F I + + F +VW K
Sbjct: 60 NARFVAL----VEEIYRVLKNNSHFYLFCDQETMFEIKPLAEAAGFKFWKPLVWDKCAIG 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y Y+ + + + D +P +R+
Sbjct: 116 MGY----------------------HYRARYEFILFFEKGKRKLQDLGMPDVLQEKRVW- 152
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PT+KP L+ +++ S+ G +++DPFFGSG + A+ L R + G ++
Sbjct: 153 ----RGYPTEKPVPLIEKLIGQSSTAGQLVIDPFFGSGATLVAAQNLNREWQGADVAPSA 208
Query: 258 IDIATKRIA 266
+ A KR+
Sbjct: 209 HEHAAKRLK 217
>gi|194015599|ref|ZP_03054215.1| DNA methylase N-4/N-6 [Bacillus pumilus ATCC 7061]
gi|194013003|gb|EDW22569.1| DNA methylase N-4/N-6 [Bacillus pumilus ATCC 7061]
Length = 425
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/259 (20%), Positives = 109/259 (42%), Gaps = 14/259 (5%)
Query: 20 KDKIIKGNS--ISVLEKLPAK-SVDLIFADPPYNLQLNGQLYR-PDHSLVDAVTDSWDKF 75
+ ++ G++ I +++L + DL+ DPPYN+ + + D + DS D
Sbjct: 172 RHTLVCGDATKIEDVDRLMSGHKADLVITDPPYNVAVKSDSKKLNDDGHASILNDSMDDG 231
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+D F R L RV+ ++V + +++ + I + +W K++
Sbjct: 232 Q----FDLFLREVFLNYSRVMNEKAAIYVFHAASYQRAFENEMRHADIDIRSQCIWVKNS 287
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P + +++ HE + +A + + + + D + E
Sbjct: 288 PTFGWA--QYKYMHEPVFYAFKKGYSPNWYGDRKQVTVWRADTSEEGEPATIW----EVS 341
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R + +HPTQKP L++ L +S+K GD ++D F GSG++ ++ R + +E+
Sbjct: 342 RGDTTKYVHPTQKPLDLINIPLSNSSKKGDRVVDFFGGSGSTLMTCEQTDREALLLELDP 401
Query: 256 DYIDIATKRIASVQPLGNI 274
+ D+ KR +
Sbjct: 402 YFCDVIKKRFTEFTGIEPE 420
>gi|220930514|ref|YP_002507423.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
H10]
gi|220000842|gb|ACL77443.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
H10]
Length = 359
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 68/353 (19%), Positives = 110/353 (31%), Gaps = 103/353 (29%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL---------YRPDHSLVDAVTD 70
+KI + + L+ L +VD PPY + L Y P L +
Sbjct: 3 LNKIYNMDCLQGLKLLEQNTVDCCVTSPPYYGLRDYGLPETLWPEVEYSPLPGLPEINIT 62
Query: 71 SW----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------------- 111
W + E + R LK +GT WV +
Sbjct: 63 EWKGCLGLEPTIEMFIGHIVLIFREVYRTLKKSGTCWVNFGDSYVGTGGDRKNPVQNELF 122
Query: 112 ---------------------------------FRIGTMLQNLNFWILNDIVWRKSNPMP 138
+R+ LQ +++ DI+W K N MP
Sbjct: 123 NLQQSHTPGDGRYCRNKTLKKSGLKVKDMMGIPWRVAFALQADGWYLRMDIIWNKLNCMP 182
Query: 139 NFRGRRFQNAHETLIWASPSPKAKG-------YTFNYDALKAANEDVQMRSDWLIPICSG 191
R AHE L S Y N D + + + G
Sbjct: 183 ESANDRPTKAHEYLFLLSKDKNYYFDNESIKEYCVNGDPNPPRGSEGVLGNPNKGRRGPG 242
Query: 192 SERLR----------------NKDGEK------------------LHPTQKPEALLSRIL 217
+ +++ G+K H P L+ +
Sbjct: 243 NWKIKSVGLPGESANRGTPSVPVAGKKEFRNKRSVWHVATDKLREAHFATFPPKLIEPCI 302
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK-RIASVQ 269
++ G +LD F GSGT+ VA++ R++IG E+ +YI+IA + R+++VQ
Sbjct: 303 IAGCPVGGTVLDIFMGSGTTAMVAEQNNRNYIGFELNPEYIEIANRTRLSNVQ 355
>gi|157952314|ref|YP_001497206.1| hypothetical protein NY2A_B010R [Paramecium bursaria Chlorella
virus NY2A]
gi|155122541|gb|ABT14409.1| hypothetical protein NY2A_B010R [Paramecium bursaria Chlorella
virus NY2A]
Length = 303
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/310 (18%), Positives = 112/310 (36%), Gaps = 76/310 (24%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-FSSFEAY 81
+ +++ + +SVDL DPPY V +SWD + +FE Y
Sbjct: 2 FVNEDNVKFMNTFEDESVDLFILDPPY---------------YKVVKESWDNVWKTFEEY 46
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN----PM 137
+ + + K + +LW+ G + + ++ +++++ F I+ K
Sbjct: 47 QEWFDNLMGTISKKAKKSCSLWLFGFPYQLTKLISIMEHHGFAYRQQIIVFKGMQSVAGR 106
Query: 138 PNFRGRRFQNAHETLIWASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ + + F A E++ + + + + K N+ + S+ S
Sbjct: 107 VSSKLKMFPTATESIFFFYKDSRDIVKKLLNERKIVSGKTCKEINDHLGKASNG-GGTWS 165
Query: 191 GSERLRNKDGE------------------------------------------------K 202
G L+ KD + K
Sbjct: 166 GIAGLKKKDTQYPTKEDWEKLDELIGPIGKYGDYVYKFNVKFGLTDVWSDINFYNRSVQK 225
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+HPTQKP L+ R++ SS+ D++ DPF GSG + V +K+ R E+ ++Y + A
Sbjct: 226 IHPTQKPIELIQRLIESSSNENDVVCDPFGGSGVTWYVCQKMNRKCFSCELSKEYYEKAL 285
Query: 263 KRIASVQPLG 272
I+
Sbjct: 286 DAISKDYKKK 295
>gi|304439210|ref|ZP_07399128.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372342|gb|EFM25930.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 411
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/269 (20%), Positives = 101/269 (37%), Gaps = 35/269 (13%)
Query: 20 KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K K+I G+S + + + +LI DPPYN+ G + + D
Sbjct: 167 KHKLICGDSTDEITYEKLMGESKANLIITDPPYNVNYEGSAGKIKN----------DNME 216
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F + L + L +G+++V + Q+ F++ +W+K +
Sbjct: 217 QGKFY-EFLLSSFLNMEKFLADDGSIYVFHADTEGLNFRKAFQDAGFYLSGTCIWKKQSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K YT ++ + + D
Sbjct: 276 VLGRSPYQWQHE-PILYGWKKKGKHNWYTGRKESTIWEFDKPRKNGD------------- 321
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP LLS + +S+ I+LDPF GSG++ ++ R IE+ +
Sbjct: 322 -------HPTMKPIPLLSYPIKNSSMTNSIVLDPFGGSGSTLIACEQTDRICRMIELDEK 374
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTE 285
++D+ R + + GK +
Sbjct: 375 FVDVIVNRFIELVGSDKDVSLLRDGKEYK 403
>gi|238027159|ref|YP_002911390.1| DNA modification methylase [Burkholderia glumae BGR1]
gi|237876353|gb|ACR28686.1| DNA modification methylase [Burkholderia glumae BGR1]
Length = 355
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 68/352 (19%), Positives = 106/352 (30%), Gaps = 106/352 (30%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
W D+ G+ ++ + A V I PPY + Y PD A +
Sbjct: 1 MTWLDRSHLGDCRDLMRTMIADGVRVQTIVTSPPYW---GLRSYLPDGHPDKA--REIGQ 55
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH------------------------- 109
+ + R++L +GT W+
Sbjct: 56 EPTLREFIDTLVEVFSLARQLLADDGTAWINMGDSYAANRSYQVASTLMNGDATNQAQAA 115
Query: 110 ------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
+R+ LQ+ +++ DI+W K NPMP R AHE
Sbjct: 116 GGRGMKVPDGLKPKDLVGQPWRLAFALQDAGWYLRQDIIWAKPNPMPESVRDRCTKAHEY 175
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDV------QMRSDWLIPICSGSERLRNKDGEK--- 202
L S S + + +ED G R+ K
Sbjct: 176 LFLLSKSERYYFDHQAMREPRTQDEDSSVFRGGCYVGGADDNAVLGKRRVPGNKSHKGTT 235
Query: 203 -----------------------------------------------LHPTQKPEALLSR 215
H PEAL+
Sbjct: 236 ASANDEKHRTKAGLVDYAQRERDADPGDLGTRNRRSVWTIATQPYAAAHFATFPEALVEP 295
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+++ ++PGD++ DPFFGSGT G VA++L R F+G E+ DY + R+
Sbjct: 296 CVLAGSRPGDVVFDPFFGSGTVGQVAQRLGRRFLGCELNPDYEPLQRDRLRQ 347
>gi|110005034|emb|CAK99365.1| putative n6 adenine specific dna methyltransferase protein
[Spiroplasma citri]
Length = 243
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 23/251 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLV-DAVTDSWDKFSSF 78
K+I G+++ ++ L SVDLI DPPY NL + + S + ++ +
Sbjct: 8 KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+++F L + N + + + I I + +L D +
Sbjct: 68 NLHNSFDINTYLDEFYRISKNKFMLIWMNRQQI--IDYLDWVRKKDMLYDFILWNKTNPM 125
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+Q+ +I S + Y +Y++ K G + R
Sbjct: 126 PTNNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKTI-----------FNYSIGKKLTR-- 172
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPT+KP + +R++ +K D+ILD F GSGT+ ++L+R ++G E+ +Y
Sbjct: 173 -----HPTEKPLYIFNRLISKYSKENDLILDCFLGSGTTAYACEQLKRKWLGCEINNEYY 227
Query: 259 DIATKRIASVQ 269
I KR+ +Q
Sbjct: 228 KIIKKRLKDIQ 238
>gi|330448524|ref|ZP_08312172.1| DNA methylase family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492715|dbj|GAA06669.1| DNA methylase family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 217
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 37/248 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ + +++ L LP +S+DL+ DPPY + G R S ++ W
Sbjct: 2 QLFQQDAVEWLSSLPDQSIDLLITDPPYESLEKHRAVGTTTRLKQSK--GSSNQWFNIFP 59
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E +D L RVLK N ++ +F I + + + F IVW K
Sbjct: 60 NERFDTL----LTQAYRVLKQNSHFYLFCDQETMFHIKPIAEQVGFKFWKPIVWDKVAIG 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y Y+ + + + ++ IP +R+
Sbjct: 116 MGY----------------------HYRARYEFILFFEKGKRKLNNLSIPDVLECKRV-- 151
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PT+KP LL ++ S+ G+++ DPFFGSG++ A+KL R G ++
Sbjct: 152 ---YRGYPTEKPVPLLEILIEQSSVEGEVVADPFFGSGSTLVAAQKLSRQAWGNDISDSA 208
Query: 258 IDIATKRI 265
T+RI
Sbjct: 209 HQHLTQRI 216
>gi|148271668|ref|YP_001221229.1| putative adenine-specific DNA-modification methylase [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147829598|emb|CAN00513.1| putative adenine-specific DNA-modification methylase [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 348
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 12/222 (5%)
Query: 51 LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
L +G+ Y ++ D SF Y F L+ R+L P GTL++ Y
Sbjct: 115 LGFHGRSYDSVKGMLYGFDD------SFADYWDFLEPRLIEAWRLLDPTGTLYLHLDYRE 168
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------ 164
+ +L L + RR+ H+T++ P +
Sbjct: 169 VHYAKVVLDALFGRRSFLNEIVWAYDYGAKSRRRWPAKHDTILVYVKDPVRYRFDSEGVD 228
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
Y A + + R + + + + TQKP +L RI+ +S++PG
Sbjct: 229 REPYMAPGLVTPEKRERGKLPTDVWWHTIVSPTGREKTGYATQKPLGVLRRIVQASSRPG 288
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
D +LD F GSGT+GA A++L R F+ ++ +++ R+A
Sbjct: 289 DWVLDFFAGSGTTGAAARELGRRFVLVDENPQAVEVMRARLA 330
Score = 49.7 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
D +I ++ + LP + LI+ DPP+N
Sbjct: 12 DLVIHAENLEAVRALPDGAFQLIYLDPPFNTGR 44
>gi|39653711|ref|NP_945276.1| transferase [Streptococcus phage EJ-1]
gi|38638879|emb|CAE82119.1| transferase [Streptococcus phage EJ-1]
Length = 421
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 107/277 (38%), Gaps = 33/277 (11%)
Query: 20 KDKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S + +L +V DL DPPYN+ G + D++ D
Sbjct: 159 RHRLMCGDSTSAEDMARLIDGAVIDLYVTDPPYNVAYQGGTDEAMTIMNDSMDD------ 212
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ F R LK G ++ + ++ + + I+W K+
Sbjct: 213 --VSFRQFLRDAFAVANNHLKSGGAFYIWHADSEGLNFRAAVKETGWLLKQSIIWVKNAI 270
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED----------------VQM 180
+ + +Q HE ++ + + N ED M
Sbjct: 271 VLG--RQDYQWKHEPCLYGWKDGASHYFVDNRSLATVIEEDEENLKEMTKSELISYIKTM 328
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + + +RN +HPT KP L++R +++S+K GD ILD F G G++ V
Sbjct: 329 QDTSPTTVFYEDKPVRND----IHPTMKPLKLIARCVLNSSKKGDKILDSFNGGGSTLMV 384
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
++ R +E+ Y++ KR L +++
Sbjct: 385 CERSERVCYAMELDPVYVERTIKRWEEETGLTAEKVS 421
>gi|110005177|emb|CAK99504.1| putative n6 adenine specific dna methyltransferase protein
[Spiroplasma citri]
Length = 243
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 23/251 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLV-DAVTDSWDKFSSF 78
K+I G+++ ++ L SVDLI DPPY NL + + S + ++ +
Sbjct: 8 KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQKNEKSNITKSINKYINAIYDN 67
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+++F L + N + + + I I + +L D +
Sbjct: 68 NLHNSFDINTYLDEFYRISKNKFILIWMNRQQI--IDYLDWVRKKDMLYDFILWNKTNPM 125
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+Q+ +I S + Y +Y++ K G + R
Sbjct: 126 PTNNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKTI-----------FNYSIGKKLTR-- 172
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPT+KP + +R++ +K D+ILD F GSGT+ ++L+R ++G E+ +Y
Sbjct: 173 -----HPTEKPLYIFNRLISKYSKENDLILDCFLGSGTTAYACEQLKRKWLGCEINNEYY 227
Query: 259 DIATKRIASVQ 269
I KR+ +Q
Sbjct: 228 KIIKKRLKDIQ 238
>gi|325478683|gb|EGC81794.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 412
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/267 (19%), Positives = 98/267 (36%), Gaps = 35/267 (13%)
Query: 20 KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K K++ G+S + + +LI DPPYN+ G + + D
Sbjct: 168 KHKLVCGDSTDETTYEKLMKESKANLIITDPPYNVNYEGSAGKIKN----------DNME 217
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F + L + L +G+++V + Q+ F++ +W+K +
Sbjct: 218 QSKFY-EFLLSSFLNMEKFLADDGSIYVFHADTEGLNFRKAFQDAGFYLSGTCIWKKQSL 276
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K YT ++ + + D
Sbjct: 277 VLGRSPYQWQHE-PILYGWKKKGKHNWYTGRKESTIWEFDKPRKNGD------------- 322
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP LLS + +S+ I+LDPF GSG++ ++ R IE+ +
Sbjct: 323 -------HPTMKPIPLLSYPIKNSSMTNAIVLDPFGGSGSTLIACEQTDRICRMIELDEK 375
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
++D+ R + GK
Sbjct: 376 FVDVIVNRFIESVGSDKDVSLLRDGKE 402
>gi|254778966|ref|YP_003057071.1| Non-functional cytosine methyltransferase (N4 methylation of
cytosyl residues) [Helicobacter pylori B38]
gi|254000877|emb|CAX28813.1| Non-functional cytosine methyltransferase (N4 methylation of
cytosyl residues) [Helicobacter pylori B38]
Length = 252
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/256 (21%), Positives = 91/256 (35%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + Q D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCITSPPYNLSIEYQGS--------------DDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWV-------------IGSYHNIFRIGTMLQNLNFWILNDI 129
+ + WL C K L + +G+ I + N I N+
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNES 116
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ ++ A + K + + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVIFYKNEYKRKKQTSTMSKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|317008913|gb|ADU79493.1| type II DNA modification [Helicobacter pylori India7]
Length = 252
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/256 (21%), Positives = 91/256 (35%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + Q D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------DDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWV-------------IGSYHNIFRIGTMLQNLNFWILNDI 129
+ + WL C K L + +G+ I + N I N+
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNES 116
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ ++ A + K + + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWNFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|322369912|ref|ZP_08044474.1| modification methylase [Haladaptatus paucihalophilus DX253]
gi|320550248|gb|EFW91900.1| modification methylase [Haladaptatus paucihalophilus DX253]
Length = 342
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/285 (22%), Positives = 113/285 (39%), Gaps = 27/285 (9%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
E + +I G++ LP S+DL+ PPY +++ L+ + ++ + D
Sbjct: 1 METEHEIHVGDARDT--SLPDDSIDLVVTSPPYPMIEMWDDLFADANPEIETALSAGDGD 58
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLNF 123
++FE A RVLKP G + S+ N + L+
Sbjct: 59 TAFELMHDELDAVWAELVRVLKPGGIAVINVGDATRKVDGTFQSFPNHAHVLRDLRERGL 118
Query: 124 WILNDIVWRKSNPMPNF---RGRRFQNA-----HETLIWASPSPKA---KGYTFNYDALK 172
L DI+WRK + G NA HE L+ G Y++
Sbjct: 119 KSLPDILWRKPSNRLTKFMGSGMLPPNAYAALEHEYLLVFRNGDTREFEPGVDHRYESSY 178
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
E + SD L G E+L + + P L R++ + GD +LDPF+
Sbjct: 179 FWEERNEWFSD-LWTDVRGEEQLLDHGDLRERSAAFPFELPYRLISMFSVYGDTVLDPFW 237
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
G+GT+ A R+ +G E++ D++++ +R + L ++
Sbjct: 238 GTGTTSLAAMVAGRNSVGYELEPDFVELFAERAETTPELSRSVIS 282
>gi|323345090|ref|ZP_08085314.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
gi|323094360|gb|EFZ36937.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
Length = 280
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/268 (22%), Positives = 97/268 (36%), Gaps = 39/268 (14%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
G +S ++K+ KSV+ I PPYNL Y + SF ++
Sbjct: 25 GECVSTMKKMREKSVNTIVTSPPYNLNKKYGKYNDNR--------------SFAEWENLI 70
Query: 86 RAWLLACRRVLKPNGTLWVIGS-----------------YHNIFRIGTMLQNLNFWILND 128
A +RVL +G+ + S Y R G L+N W N+
Sbjct: 71 GRVAEAAKRVLTDDGSFLLNVSPVPDKKTKEIIPLDAMAYFIFKRHGYALRNSIVWHFNN 130
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW---- 184
+ + + + + + Y D W
Sbjct: 131 MQNCVNRLSGRWEAILWFVKDIDNYQFNLNDIRIPYITKNDKRLEGGAGRNPTDTWNFDV 190
Query: 185 ----LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ +NK G HP P ++ RI+ +T GD++LDPF GSGT+
Sbjct: 191 EGSDFWYFDRVNNMTKNKLGLAEHPCIFPTPMIERIIKMTTHKGDVVLDPFLGSGTTLVA 250
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASV 268
A+KL R +GIE+ + ++ I KR+ +
Sbjct: 251 AQKLGRVGLGIELDKKFVPIIKKRVDNE 278
>gi|254509635|ref|ZP_05121702.1| DNA methylase N-4/N-6 domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221533346|gb|EEE36334.1| DNA methylase N-4/N-6 domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 481
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 17/195 (8%)
Query: 180 MRSDWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
L + + +L N+ +PTQKPE L+ RI+ +T PGD++LD F GSGTS
Sbjct: 140 FEGVQLQDLWTDINKLHNRSPEATGYPTQKPEKLIERIIACTTDPGDLVLDFFVGSGTSA 199
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP-------RVAFN 291
A A K R ++ ++ I+ KR+ ++ + T+ + N
Sbjct: 200 AAAYKTGRRYLAADINLGAIETTIKRLNLLREAECDQKTLKDLELGAKRFTGFELYNVNN 259
Query: 292 LLVERGLIQPGQILTNAQGNISATVCADGTLISGT------ELGSIHRVGAKVSGSETCN 345
+ R ++ +++ + + ++ G ++ ++R+ +E
Sbjct: 260 YDIFRNPVEAKELI---KEAMELQPLPTNSVFDGQRDQFLVKIMPVNRIATCQDLNEVIA 316
Query: 346 GWNFWYFEKLGELHS 360
G +F +E+
Sbjct: 317 GMDFKAYERRQAEAP 331
>gi|170780698|ref|YP_001709030.1| putative DNA methylase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155266|emb|CAQ00367.1| putative DNA methylase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 334
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 11/225 (4%)
Query: 47 PPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
PP + ++ V + +D SF Y F L+ R+L P GTL++
Sbjct: 98 PP---GARLGFHGRSYNSVKGMLYGFD--DSFADYWDFLEPRLIEAWRLLDPTGTLYLHL 152
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-- 164
Y + +L L + RR+ H+T++ P +
Sbjct: 153 DYREVHYAKVVLDALFGRRSFLNEIVWAYDYGAKSRRRWPAKHDTILVYVKDPLRYRFDS 212
Query: 165 ----TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
Y A + + R + + + + TQKP +L RI+ +S
Sbjct: 213 EGVDREPYMAPGLVTPEKRERGKLPTDVWWHTIVSPTGREKTGYATQKPLGVLRRIVQAS 272
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++PGD +LD F GSGT+GA A++L R F+ ++ +++ R+
Sbjct: 273 SRPGDWVLDFFAGSGTTGAAARELGRRFVLVDENPQAVEVMRARL 317
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
I ++ + LP + LI+ DPP+N
Sbjct: 2 IHAENLQAVRALPDGAFQLIYLDPPFNTGR 31
>gi|322379314|ref|ZP_08053692.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
HS1]
gi|322380167|ref|ZP_08054405.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
HS5]
gi|321147406|gb|EFX42068.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
HS5]
gi|321148259|gb|EFX42781.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter suis
HS1]
Length = 254
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/253 (19%), Positives = 91/253 (35%), Gaps = 26/253 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + +++ L L +S+D I PPYN+ + D ++ Y
Sbjct: 11 LLYQASALDYL-VLEEQSLDCIITSPPYNVGMAYNGS--------------DDSQDYQEY 55
Query: 82 DAFTRAWLLACRRVLKPNGTLWVI-------GSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F+ +L C K +G L + G ++ L W + +
Sbjct: 56 LDFSAHYLANCYAWAKKSGRLCLNIPLDKNKGGQQSVGADIISLAKKMGWCYHSSIIWNE 115
Query: 135 NPMPNFRGR-RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + +A + A Y + D+ I +G
Sbjct: 116 GNVSRRTAWGSWLSASAPYVIAPVELIVIFYKEVWKKQHKGVSDLSKE--EFIAWTNGLW 173
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ +++ HP P L R + + GD+I DPF GSGT+ A +R+F+GIE
Sbjct: 174 SFNGESAKRIGHPAPFPRELPRRCIKLFSFIGDVICDPFSGSGTTMLEAYANQRNFVGIE 233
Query: 253 MKQDYIDIATKRI 265
+ Y +++ +R
Sbjct: 234 LDPTYCELSKQRF 246
>gi|110005618|emb|CAK99936.1| hypothetical adenine specific dna methyltransferase protein
[Spiroplasma citri]
Length = 243
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 23/251 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLV-DAVTDSWDKFSSF 78
K+I G+++ ++ L SVDLI DPPY NL + S + ++ +
Sbjct: 8 KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQINEKSNITKSINKYINAIYDN 67
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+++F L + N + + + I I + +L D +
Sbjct: 68 NLHNSFDINTYLDEFYRISKNKFMLIWMNRQQI--IDYLDWVRKKDMLYDFILWNKTNPM 125
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+Q+ +I S + Y +Y++ K G + R
Sbjct: 126 PTNNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKTI-----------FNYSIGKKITR-- 172
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPT+KP + +R++ +K D+ILD F GSGT+ ++L+R ++G E+ +Y
Sbjct: 173 -----HPTEKPLYIFNRLISKYSKENDLILDCFMGSGTTAYACEQLKRKWLGCEINNEYY 227
Query: 259 DIATKRIASVQ 269
I KR+ +Q
Sbjct: 228 KIIKKRLKDIQ 238
>gi|284005615|ref|YP_003391435.1| DNA methylase N-4/N-6 domain protein [Spirosoma linguale DSM 74]
gi|283820799|gb|ADB42636.1| DNA methylase N-4/N-6 domain protein [Spirosoma linguale DSM 74]
Length = 644
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 11/189 (5%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
M L + + + L + GE++ +PTQKPE LL RI+ S+ PGD++ D F GSGT+
Sbjct: 307 MPGVSLQDMWTDVKLLSSHSGERVDYPTQKPETLLERIIQVSSNPGDLVFDCFMGSGTTQ 366
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL-VERG 297
+VA KL R FIG ++ I TKR+ + N ++ T N V R
Sbjct: 367 SVAMKLGRRFIGADINLGAIQTTTKRLIKIANELNGKVNDGTVYTGFQVYNVNHYDVFRN 426
Query: 298 LIQPGQILTNAQGNISATVCADGTLISGTELG------SIHRVGAKVSGSETCNGWNFWY 351
++ ++L + G L G + G ++R+ + +E + +
Sbjct: 427 PLEAKELLM---KALEVEPAPGGGLFDGEKDGRLIKVMPVNRIATRADLNELLSNIDLRA 483
Query: 352 FEKLGELHS 360
+EK
Sbjct: 484 YEKKKSEAP 492
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 19 WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSW 72
W ++I G+++ V+ L VDLI+ DPP++ + + + R + DA +
Sbjct: 62 WMNQIFWGDNLQVMSHLLKKFRGQVDLIYIDPPFDSKADYKKKIQLRGKDIMNDATSFEE 121
Query: 73 DKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ--NLNFWILN 127
+++ + Y F L+ + +L G+++V YH I ++L LN
Sbjct: 122 KQYTDIWTNDEYLQFMYERLIILKELLSEKGSIYVHCDYHKSHYIRSLLDEIFGQNNFLN 181
Query: 128 DIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+IVW+++ + + F H+ + + + Y +N + +++ ++
Sbjct: 182 EIVWKRTAAHSDAKQGAKFFGRQHDIIFYYCK---SLNYIWNQQYIPYSDDYIKQ----- 233
Query: 186 IPICSGSERLRNKDGE 201
+ R++++DG
Sbjct: 234 ------NYRMKDEDGR 243
>gi|300689933|ref|YP_003750928.1| dna modification methylase protein [Ralstonia solanacearum PSI07]
gi|299076993|emb|CBJ49606.1| putative dna modification methylase protein [Ralstonia solanacearum
PSI07]
Length = 406
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 30/248 (12%)
Query: 20 KDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ V L + D++F DPPYN+ A+ +
Sbjct: 170 RHRLLCGDATVVESYDRLLQGEPADMVFTDPPYNVNYANTAKDRQRGTSRAILNDNLGGG 229
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ A + CR G ++V S + + + I+W K
Sbjct: 230 FYDFLLAALTPTIANCR------GAIYVAMSSSELDVLQAAFREAGGRWSTFIIWAKDRF 283
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ Y + A + D W ++
Sbjct: 284 TMGHA------------DYQRQYEPILYGWAEGAQRHWCGDRDQGDVWQ---------IK 322
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
LHPT KP L+ R + +S++PGD++LD F GSGT+ A+K R+ IE+
Sbjct: 323 KPARNDLHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARTARLIELDPR 382
Query: 257 YIDIATKR 264
Y D+ +R
Sbjct: 383 YADVIVRR 390
>gi|62632223|gb|AAX89131.1| M2.BstSEI [Geobacillus stearothermophilus]
Length = 267
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/265 (21%), Positives = 102/265 (38%), Gaps = 32/265 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----DKFSS 77
KI + IS L L +S+DLI DP Y +N +L +V F+
Sbjct: 20 KIELNDCISFLNSLKDESIDLIVTDPAY-SGMNNKLKLGKGRIVGEYKQKGTENGKWFAE 78
Query: 78 FEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
FE + +L C+RVLK + G ++++ ++ +G +++ + +
Sbjct: 79 FEDSEENYHLFLQECKRVLKKDTGHIYIMFDSFSLLSLGHLMREYFDVKNIITWDKINMG 138
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
M G F+ HE +I+A+ N + + + P +R+
Sbjct: 139 M----GHYFRRRHEYIIFAT------------------NGNNRKIRNRSFPDVWRFKRIH 176
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ +PT KP L ++ +S + G + DPF GSG+S A K F+G ++ +
Sbjct: 177 HSK----YPTPKPVELFQAMIYASAEEGFTVCDPFLGSGSSAIAAIKNNCRFLGCDIASN 232
Query: 257 YIDIATKRIASVQPLGNIELTVLTG 281
+RI
Sbjct: 233 AFTANVERIHHYLKTKEDIYQPKPC 257
>gi|331686024|ref|ZP_08386594.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
gi|331076750|gb|EGI47978.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
Length = 189
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 41/227 (18%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + + R + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRT---------------IAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + +H I R ++ F + +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWHRIDRFMAAWKHAGFSVAGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A+ D L G
Sbjct: 105 SAYVAYRHECAYILAKGSPARPRNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRY 188
>gi|315453690|ref|YP_004073960.1| Modification methylase BamHII [Helicobacter felis ATCC 49179]
gi|315132742|emb|CBY83370.1| Modification methylase BamHII [Helicobacter felis ATCC 49179]
Length = 266
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/280 (20%), Positives = 107/280 (38%), Gaps = 54/280 (19%)
Query: 19 WKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +++ ++++ L+ +P+ VD++ PPY+ D + T ++K +
Sbjct: 5 FLNRLYASDAVAFLKSHVPSGGVDMVLTSPPYD----------DLRHYNGYTFEFEKMA- 53
Query: 78 FEAYDAFTRAWLLACRRVLKPNGT-LWVIGS-----YHNIFRIGTMLQNLNFWI-LNDIV 130
RVLK G +WV+G ++ L ++D++
Sbjct: 54 ------------CEIFRVLKKGGVAVWVVGDKIKNGNKSLTSFRHALYFQEIGFNVHDVM 101
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT---------------------FNYD 169
P R + N++E + S N+
Sbjct: 102 IYAKKNTPFMRSNAYTNSYEYMFVFSKGKPKTFNPLKEATARHGVEMLVANKKADGKNHK 161
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ ++ + W + G N HP PE L ++S + GD++LD
Sbjct: 162 VPRELKKEKTRTNIWYYAVGLGG--TTNDKEAFKHPATYPEQLAQDHILSWSNEGDLVLD 219
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
P GSGT+ +A RR+FIGI++ Q+YID+A +R+
Sbjct: 220 PMCGSGTTCKMAFLNRRNFIGIDISQEYIDLAQQRLDKYM 259
>gi|299067591|emb|CBJ38795.1| putative dna modification methylase protein [Ralstonia solanacearum
CMR15]
Length = 411
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 89/248 (35%), Gaps = 30/248 (12%)
Query: 20 KDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ L + VD++F DPPYN+ + A+ +
Sbjct: 170 EHRLLCGDATVAEHYDRLLQGEPVDMVFTDPPYNVNYANTAKDRERGTSRAILNDNLGGG 229
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ A + CR G ++V S + + + I+W K
Sbjct: 230 FHDFLLAALTPLVANCR------GAIYVAMSSSELDVLQAAFREAGGHWSTFIIWAKDRF 283
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ Y + A + D W ++
Sbjct: 284 TLGRA------------DYQRQYEPILYGWAEGAQRHWCGDRDQGDVWQ---------IK 322
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
LHPT KP L+ R + +S++PGD++LD F GSGT+ A+K R IE+
Sbjct: 323 KPARNDLHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELDPR 382
Query: 257 YIDIATKR 264
Y D+ +R
Sbjct: 383 YADVIVRR 390
>gi|323484105|ref|ZP_08089475.1| hypothetical protein HMPREF9474_01226 [Clostridium symbiosum
WAL-14163]
gi|323402547|gb|EGA94875.1| hypothetical protein HMPREF9474_01226 [Clostridium symbiosum
WAL-14163]
Length = 418
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 35/267 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I G+S E L +L+ DPPYN+ G A D
Sbjct: 165 RHRVICGDSTLPETYELLMDGQKANLVVTDPPYNVNYEGT----------AGNIQNDHME 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + ++P+ +++V + + F++ +W+K +
Sbjct: 215 DGKFY-QFLFAAFVNMEQSMEPDASIYVFHADTEGLNFRKAFHDAGFYLSGCCIWKKQSL 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + N D +S
Sbjct: 274 VLGRSPYQW--QHEPVLFGWKKGGKHNWYSNRKQTTIWEFDRPKQS-------------- 317
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S I+LDPF GSG++ ++ R E+ +
Sbjct: 318 -----KDHPTMKPVGLVAYPIQNSCMSNCIVLDPFGGSGSTLIACEQTSRICYMAELDEK 372
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
++D+ +R + + G++
Sbjct: 373 FVDVIVQRYIEQKGSAEDVFVIRGGEK 399
>gi|150016508|ref|YP_001308762.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
beijerinckii NCIMB 8052]
gi|149902973|gb|ABR33806.1| DNA methylase N-4/N-6 domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 410
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 53/266 (19%), Positives = 102/266 (38%), Gaps = 32/266 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K++++ G+S + + + + L+F DPPYN+ G D +
Sbjct: 168 KNRLMCGDSTVKEDIEKLINGQKAKLVFTDPPYNVNYEGATADKLTIENDNM-------- 219
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S + + F ++ ++V + + + I+W K+
Sbjct: 220 SQDEFYEFLSKVFNNYYENMEEGAPIYVCHADSEGENFRRTFREAGIKLAQCIIWVKNAF 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + +Q HE +++ KA + +D + W IP +
Sbjct: 280 VMG--RQDYQWKHEPILYGWKEGKAHYFV----------DDRTQDTVWEIPKPTR----- 322
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP AL +R + +S+KP D+++D F GSG++ A +L R +E+ +
Sbjct: 323 ----NAEHPTMKPLALCARAIKNSSKPNDLVIDLFGGSGSTLMAATELNRVCYTMEVDKK 378
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
Y D+ R + + L K
Sbjct: 379 YADVIVLRYINQYGSDGVYLLRDGEK 404
>gi|222112381|ref|YP_002554645.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
TPSY]
gi|221731825|gb|ACM34645.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
Length = 425
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 34/249 (13%)
Query: 21 DKIIKGN-----SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G+ S + + D++F DPPYN+ A+ + +
Sbjct: 171 HRLLCGDATVAESYD--RLMQGDAADMVFTDPPYNVNYANSAKDKMRGKDRAILND-NLG 227
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F + V +G ++V S + + + I+W K+
Sbjct: 228 DGFYDFL-----RAALTPTVAHCSGGIYVAMSSSELDVLQAAFRAAGGKWSTFIIWAKNT 282
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ Y + A + D W +
Sbjct: 283 FTLGRA------------DYQRQYEPILYGWPEGAQRHWCGDRDQGDVWS---------I 321
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ LHPT KP L+ R + +S++PG+++LDPF GSGT+ A+K R IE+
Sbjct: 322 KKPQKNDLHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRIARLIELDP 381
Query: 256 DYIDIATKR 264
Y+D+ +R
Sbjct: 382 KYVDVIVRR 390
>gi|294861400|gb|ADF45505.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
pipiens]
Length = 398
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 93/265 (35%), Gaps = 36/265 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L D+ DPPYN+ R D +++
Sbjct: 157 HRIYCGDSSVVESYKALLDDKMADITICDPPYNVDYGSSQEREDKKILNDNQG------- 209
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 210 -EKYELFLYDICSHILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 266
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 267 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPT------- 307
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ +
Sbjct: 308 --HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 365
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+D+ KR G + TGK
Sbjct: 366 VDVTIKR--WQVYTGREAILSGTGK 388
>gi|163758317|ref|ZP_02165405.1| DNA methylase N-4/N-6 [Hoeflea phototrophica DFL-43]
gi|162284606|gb|EDQ34889.1| DNA methylase N-4/N-6 [Hoeflea phototrophica DFL-43]
Length = 456
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 19/258 (7%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWDK 74
+++ G++ + +L L+F DPPYN+ ++G L R H + D+
Sbjct: 157 HRLLCGDARSHEDIARLCEGKPAALLFTDPPYNVAIDGHVSGLGRIKHREFALASGEMDE 216
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ AF + L A LK +V + ++ + + + N VW K+
Sbjct: 217 ----TTFAAFLKESLGAAASQLKDGAIAYVCMDWRHMRELLEAGHAVFDELKNLCVWNKT 272
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N G +++ HE + T + + + R++ S
Sbjct: 273 NGGM---GSFYRSKHELVFVFKKG------TAAHINNFGLGDTGRYRTNVWDYPGISSLG 323
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ +HPT K AL++ + +K GD +LD F GSG++ A + R+ IE+
Sbjct: 324 ANRDEELAMHPTVKSVALIADAIRDCSKRGDTVLDVFGGSGSTLIAADQCGRAARLIEID 383
Query: 255 QDYIDIATKRIASVQPLG 272
Y D +R +
Sbjct: 384 PLYCDTIIRRFERITGEP 401
>gi|90578026|ref|ZP_01233837.1| haemagglutinin associated protein [Vibrio angustum S14]
gi|90441112|gb|EAS66292.1| haemagglutinin associated protein [Vibrio angustum S14]
Length = 219
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 37/249 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + ++I L LP +S+DL+ DPPY + S+ K SS + +
Sbjct: 2 QIFQKDAIEWLTALPDQSIDLMITDPPY------ESLEKHRSVGTTTRLKQSKGSSNQWF 55
Query: 82 DAFTRAW----LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
D F L RVLK N ++ +F I + + + F IVW K
Sbjct: 56 DIFPNERFESLLTQAYRVLKQNSHFYLFCDQETMFHIKPIAEQVGFKFWKPIVWDKVAIG 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y Y+ + + + ++ IP +R+
Sbjct: 116 MGY----------------------HYRARYEFILFFEKGKRKLNNLSIPDVLECKRV-- 151
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PT+KP LL ++ S+ GD+I DPFFGSG++ A KL R G ++
Sbjct: 152 ---YRGYPTEKPVPLLEILIEQSSVEGDVIADPFFGSGSTLVAADKLSRQAWGSDISDSA 208
Query: 258 IDIATKRIA 266
+R++
Sbjct: 209 HQHLKQRLS 217
>gi|86281699|gb|ABC90762.1| probable DNA-methyltransferase protein (hemagglutinin-associated
protein) [Rhizobium etli CFN 42]
Length = 201
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 41/238 (17%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
++++++L SVD I DPPY ++ + R + +AV + +
Sbjct: 1 MTLMQRLQGGSVDFILTDPPYLVRYRDRRGRTVANDNNAV---------------WLKPA 45
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
RVLKP ++++ R + F ++ +V+ KS R +
Sbjct: 46 FAEMHRVLKPGRLAVSFYGWNHVDRFMEAWRKAGFRVVGHLVFVKSYASSQ---RFVRYH 102
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
HE + A D L + G ++HPTQK
Sbjct: 103 HEQAYVLAKGDAAPPAQPIADVLPW-----------------------DYTGNRMHPTQK 139
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
P L +I+ + +KPG+++LDPF GSG++ A + R ++G+E++ + A+ R+
Sbjct: 140 PLRPLEQIIRAFSKPGELVLDPFCGSGSTLLAAARSGRDYLGMELEHRHQLTASLRVH 197
>gi|331085743|ref|ZP_08334826.1| hypothetical protein HMPREF0987_01129 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406666|gb|EGG86171.1| hypothetical protein HMPREF0987_01129 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 418
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/287 (17%), Positives = 107/287 (37%), Gaps = 35/287 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLY 58
++ A+ + + +++ G+S EKL +L+ DPPYN+ G
Sbjct: 147 AELKKPAMTKQGDVWMLGMHRLVCGDSTLPETYEKLMEGKKANLVVTDPPYNVNYEGSAG 206
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + ++ DKF + F A + + ++ + +++V +
Sbjct: 207 KIQNDNLED-----DKFYN------FLFAAFVNMEQNMERDASIYVFHADTEGLNFRRAF 255
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ F++ +W+K + + ++ HE +++ + + D
Sbjct: 256 KAAGFYLSGTCIWKKQSLVLGRSPYQW--QHEPILFGWKLGGKHMWYSDRKQSTIWEYDR 313
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
++D HPT KP L++ + +S+ I+LDPF GSG++
Sbjct: 314 PKKNDM-------------------HPTMKPVELVAYPIRNSSMSNCIVLDPFGGSGSTM 354
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
++ R IE+ + Y D+ R + GK+ +
Sbjct: 355 IACEQTGRICRTIELDEKYADVIVHRYMEFVGSAEDVYVIRDGKKIK 401
>gi|167900256|ref|ZP_02487657.1| site-specific DNA methyltransferase [Burkholderia pseudomallei
7894]
Length = 240
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 58/248 (23%), Positives = 92/248 (37%), Gaps = 32/248 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWDKFSSF 78
+++++ LP S+D++F DPPY+ R + TD
Sbjct: 2 DALTLARMLPDASIDMVFTDPPYSSGGLHTSARTRPPSAKYINSDTKTVYTDFDSDNMDQ 61
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ + AWL CRR LKP G L + + + ++Q + VW K+
Sbjct: 62 RAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPGRT 121
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
R F E ++WAS MR + RL
Sbjct: 122 RPRRGGFAQQAEFVVWASRG--------------------AMRDCDVYLPGVFPVRL--- 158
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
K H T+KP + ++ G ++ D F GSGT A A++ ++G E Y
Sbjct: 159 PLPKQHVTEKPLDVAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGLHWVGCETNPAYH 217
Query: 259 DIATKRIA 266
IA+ R+
Sbjct: 218 AIASSRLD 225
>gi|218960490|ref|YP_001740265.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
gi|167729147|emb|CAO80058.1| DNA methylase N-4/N-6 [Candidatus Cloacamonas acidaminovorans]
Length = 430
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 63/315 (20%), Positives = 114/315 (36%), Gaps = 34/315 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + KII G+S +EK+ +SV LI PPY + + +
Sbjct: 1 MMKTSHKIIIGDSR-CMEKVKDESVHLIVTSPPYWQLKDYGNH-----------NQIGFN 48
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-------YHNIFRIGTMLQNLNFWILND 128
++E Y C+RVL L + Y+ +++ + + + +D
Sbjct: 49 DTYEEYINNLNLVWNECKRVLHKGCRLCINIGDQFARSVYYGRYKVIPIRTEIIKFCESD 108
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW---- 184
+ T++ + P P+ +Y+ + + S
Sbjct: 109 GFDYMGAIIWQKVTTCHTTGGATIMGSFPYPRNGIIKLDYEYILIFKKYGDPPSVQSALK 168
Query: 185 ---------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+G + K H PE L R++ + GD ILDPF GSG
Sbjct: 169 EQSKLTIEEWNQYFTGHWNFSGEKQNK-HLAMFPEELPKRLIKMFSFVGDTILDPFLGSG 227
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
TS A+ L R+ IG E+ ++Y+ I +++ Q + E T K+ E + F +
Sbjct: 228 TSSLAARNLNRNSIGYEINENYLPIIKEKLDLEQGVIFQEETYEIIKQKELDINFQEEIS 287
Query: 296 RG-LIQPGQILTNAQ 309
+ I I + +
Sbjct: 288 KLPYIFKDPIKFDKK 302
>gi|47092597|ref|ZP_00230385.1| adenine methyltransferase, putative [Listeria monocytogenes str. 4b
H7858]
gi|254900839|ref|ZP_05260763.1| hypothetical protein LmonJ_13526 [Listeria monocytogenes J0161]
gi|47019025|gb|EAL09770.1| adenine methyltransferase, putative [Listeria monocytogenes str. 4b
H7858]
Length = 435
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/265 (19%), Positives = 114/265 (43%), Gaps = 12/265 (4%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++ G++ + V + + K VDL+ DPPYN+ + + S ++ +
Sbjct: 177 RHFLMCGDTTNIVDVQQLMQGKQVDLVITDPPYNVAVESDNKNLEKSGRSSILND---DM 233
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ E +D F + ++V+ + ++V ++ N + + +W K+ P
Sbjct: 234 TDEQFDMFLAKVFQSYQKVMAGHAAIYVFHPSSYQIEFENSMKLANIQVRSQCIWIKNYP 293
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +++ HE + +A ++ + + + + + E R
Sbjct: 294 SFGWS--QYRWQHEPVFYAHLKGESPFWYGDRKQTTTWRDHSYLGEEASTIW----EIAR 347
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ + +HPTQKP LL+ + +S+K GD I D F GSG++ A++L R +E+
Sbjct: 348 DSNNTYIHPTQKPLDLLAIPMRNSSKKGDTIADFFGGSGSTLLTAEQLGRICYTMELDPK 407
Query: 257 YIDIATKRIASVQPLGNIELTVLTG 281
+ D +R + + + + LT
Sbjct: 408 FCDAIKQRFEAYTGIKPVLMQQLTT 432
>gi|89076177|ref|ZP_01162534.1| haemagglutinin associated protein [Photobacterium sp. SKA34]
gi|89048127|gb|EAR53712.1| haemagglutinin associated protein [Photobacterium sp. SKA34]
Length = 219
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 37/251 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + ++I L LP +S+DL+ DPPY + S+ K SS + +
Sbjct: 2 QIFQKDAIEWLTALPDQSIDLMITDPPY------ESLEKHRSVGRTTRLKQSKGSSNQWF 55
Query: 82 DAFTRAW----LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
D F L RVLK N ++ +F I + + + F IVW K
Sbjct: 56 DIFPNERFESLLTQAYRVLKQNSHFYLFCDQETMFHIKPIAEKVGFKFWKPIVWDKVAIG 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y Y+ + + + ++ IP +R+
Sbjct: 116 MGY----------------------HYRARYEFILFFEKGKRKLNNLSIPDVLECKRV-- 151
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PT+KP LL ++ S+ GD++ DPFFGSG++ A KL R G ++
Sbjct: 152 ---YRGYPTEKPVPLLEILIEQSSVEGDVVADPFFGSGSTLVAADKLSRQAWGSDISDSA 208
Query: 258 IDIATKRIASV 268
+R++S
Sbjct: 209 HQHLKQRLSSR 219
>gi|294861402|gb|ADF45506.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
molestus]
Length = 425
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 56/280 (20%), Positives = 95/280 (33%), Gaps = 36/280 (12%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L D+ DPPYN+ R D +++
Sbjct: 157 HRIYCGDSSVVESYKALLDDKMADITICDPPYNVDYGSSQEREDKKILNDNQG------- 209
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + + I+W K++
Sbjct: 210 -EKYELFLYDICSHILAYTK--GAIYICISSSEFSTLQKVFEEAGGRWSTFIIWAKNHFT 266
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 267 LGRS------------DYQRQYEAMLYGWKNGNKREWHGGRNQSDLWFYDKPT------- 307
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ +
Sbjct: 308 --HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 365
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
+D+ KR G L TGK +
Sbjct: 366 VDVTIKR--WQIYTGRDALLASTGKTFAEIQEEKFVKRSN 403
>gi|317180068|dbj|BAJ57854.1| adenine specific DNA methyltransferase [Helicobacter pylori F32]
Length = 252
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 94/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVL+ DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGDA-SVLKTFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + + + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|294861398|gb|ADF45504.1| DNA methylase-like protein [Wolbachia endosymbiont of Culex
quinquefasciatus]
Length = 402
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 93/265 (35%), Gaps = 36/265 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L D+ DPPYN+ R D +++
Sbjct: 157 HRIYCGDSSVVESYKALLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 209
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 210 -EKYELFLYDICSHILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 266
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 267 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPT------- 307
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ +
Sbjct: 308 --HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 365
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+D+ KR G + TGK
Sbjct: 366 VDVTIKR--WQVYTGREAILSGTGK 388
>gi|163795354|ref|ZP_02189321.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
gi|163798208|ref|ZP_02192141.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
gi|163798303|ref|ZP_02192231.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
gi|159176416|gb|EDP61003.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
gi|159176502|gb|EDP61083.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
gi|159179340|gb|EDP63871.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
Length = 425
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 15/248 (6%)
Query: 20 KDKIIKGNSISVLE---KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +I+ G++ L + ++FADPPYN+ + G + A+
Sbjct: 164 EHRIMCGDARDAAAYYTLLGDERAAMMFADPPYNVAIAGNVSSTGRHAEFAMAS---GEM 220
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S EA+ F L R + V + +I + ++ ++ +LN VW K
Sbjct: 221 SPEAFRTFLSDALGLAARYSRAGAVHDVCMDWRHIQDLLSVGTSVYDALLNLCVWDKGIG 280
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G +++ HE + + N + + G R +
Sbjct: 281 GM---GSLYRSQHELICVF--RAGKARHRNNVQLGRFGRNRSNVWGYPGASSLGGELRRQ 335
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ D HPT KP L++ ++ TK GD++LDPF GSGT+ A++ R IE++
Sbjct: 336 SAD----HPTPKPIELVTDAILDVTKAGDLVLDPFGGSGTTMLAAERSSRKARLIELEGR 391
Query: 257 YIDIATKR 264
Y+D++ +R
Sbjct: 392 YVDLSIRR 399
>gi|308063125|gb|ADO05012.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
Sat464]
Length = 252
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 94/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVL+ DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGD-VSVLKTFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKCQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|295697913|ref|YP_003602570.1| DNA methylase family protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295060025|gb|ADF64762.1| DNA methylase family protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 230
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 41/248 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I G+ + V+ + PA++VD I DPPY + + R A
Sbjct: 3 RFILGDCVQVMSRFPARAVDFILTDPPYLVGYKDRTGRTLAGDNSA-------------- 48
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + RVLK + + +++ + F ++ IV+ KS +
Sbjct: 49 -EWLQPACHEMYRVLKNDSLMVSFYAWNRADLFLNAWKTAGFRVVGHIVFAKSYAS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE+ + D + G
Sbjct: 105 STFVGYTHESAYLLAKGRPQTPDRPIPDVIPW-----------------------KYTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T+PG I+LDPF GSG++ A + R +IGIEM + Y
Sbjct: 142 RHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYHAAG 201
Query: 262 TKRIASVQ 269
+R+A V+
Sbjct: 202 VRRLAQVE 209
>gi|304439292|ref|ZP_07399209.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372260|gb|EFM25849.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Peptoniphilus duerdenii ATCC BAA-1640]
Length = 321
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 62/320 (19%), Positives = 101/320 (31%), Gaps = 84/320 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II ++IS L++ P K+ D PPY + + + S E
Sbjct: 10 NYIINLDAISALKEFPDKTFDCCITSPPYYGLRDYKA-----------EGQIGREESPEE 58
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG--------------SYHNI--------------- 111
Y +RVLK GTLWV+ NI
Sbjct: 59 YLNKLIEVFREVKRVLKKEGTLWVVIGDSYAGTRSKKEYKDPKNIEGRSGQKESITEKLS 118
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ L+ +++ +DI+W K N MP R ++E + S + K
Sbjct: 119 GYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSKARK 178
Query: 161 AKGYTFNYDALKAANEDVQMR---------------------------------SDWLIP 187
+ +
Sbjct: 179 YFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDNVPKFR 238
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + H P L+ + + +ILDPF GSGT G VA ++ R
Sbjct: 239 NNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIRMDRE 298
Query: 248 FIGIEMKQDYIDIATKRIAS 267
+IGI++ +DY IA +RI
Sbjct: 299 YIGIDINKDYCQIAKERIEK 318
>gi|160933418|ref|ZP_02080806.1| hypothetical protein CLOLEP_02264 [Clostridium leptum DSM 753]
gi|156867295|gb|EDO60667.1| hypothetical protein CLOLEP_02264 [Clostridium leptum DSM 753]
Length = 279
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 48/261 (18%), Positives = 87/261 (33%), Gaps = 32/261 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--QLYRPDHSLVDAVT------DSWD 73
I+ G+++ ++ + D + DPPY + R ++ D
Sbjct: 40 TILHGDTLQIIRAFKTQVFDALITDPPYASGGWKPAEKNRTTTQKYSSMDPKNAPPDFDG 99
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL R+ KP + + + I LQ + +VW K
Sbjct: 100 DNRDQRSWTRWMAEWLYDARKACKPGAPVCLFIDWRQYPSITDALQWAGWIWRGCVVWDK 159
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P R Q+ + P P ++ + AN
Sbjct: 160 MTSRPQKGRFRQQSEYVVWGSNGPMPVSRPVGCLPGVFRYAN------------------ 201
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ H T+KP L+ ++ PG ILDPF G+GT+ A+ +GIE+
Sbjct: 202 -----PQNRTHVTEKPLQLMRDLVKICV-PGGRILDPFCGAGTTVLAARLEGYEAVGIEV 255
Query: 254 KQDYIDIATKRIASVQPLGNI 274
Y + + R+ +
Sbjct: 256 TDAYYKLGSDRVRFALEAQSE 276
>gi|215484232|ref|YP_002326459.1| Modification methylase SmaI [Acinetobacter baumannii AB307-0294]
gi|213989133|gb|ACJ59432.1| Modification methylase SmaI [Acinetobacter baumannii AB307-0294]
Length = 348
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/352 (16%), Positives = 101/352 (28%), Gaps = 115/352 (32%)
Query: 20 KDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+KI+ G+ ++ ++ + PPY + V ++
Sbjct: 1 MNKILFGDCRDLMNQMIEEGLKAQTCVTSPPYFGLRDY-----------GVNGQLGLENT 49
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------------------- 110
+ Y R +L +GTLW+
Sbjct: 50 VDEYVQNMVEVFRLVRELLHEDGTLWLNLGDSYAGSGLGMTRTGLNDGKNPKTKGLVLPK 109
Query: 111 ----------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+++ LQ +++ DI+W K NPMP R AHE +
Sbjct: 110 QNAAQSNLKPKDLIGIPWKVAFALQADGWYLRQDIIWHKPNPMPESITDRCTKAHEYIFL 169
Query: 155 ASP------------------------------------------SPKAKGYTFNYDALK 172
S KA + D+ K
Sbjct: 170 FSKSRRYFFDHVAIKEPVAESSIKRLSQNLDQQHGSTRAVMKHNGPMKAVYSRSSRDSFK 229
Query: 173 AANEDVQMRSDWLIPICSGSERLRN-----------------KDGEKLHPTQKPEALLSR 215
N SERL + K + H P L+
Sbjct: 230 RHNSKRAAVIPNQANGTHRSERLESEYDLLTRNKRSVWQVSTKPYKGAHFATFPMDLIEP 289
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+++ ++ D++ DPF GSGT+ AVA R ++G E+ Y ++ +R+
Sbjct: 290 CVLAGSRVNDVVFDPFMGSGTTAAVALMHNRQYLGCELNPQYYELQQERLEK 341
>gi|319935614|ref|ZP_08010048.1| hypothetical protein HMPREF9488_00879 [Coprobacillus sp. 29_1]
gi|319809491|gb|EFW05912.1| hypothetical protein HMPREF9488_00879 [Coprobacillus sp. 29_1]
Length = 232
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/246 (21%), Positives = 100/246 (40%), Gaps = 23/246 (9%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ II G++ V++K+ +KS+DLI DPPY + + + + ++ +
Sbjct: 7 LNSIILGDAYEVIKKIDSKSIDLIVTDPPYLISKG---SSGNGRISKQMLKLTNELQDSD 63
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ L R++K +++ + I ++ + W K+NP+P
Sbjct: 64 VANGIKLDILDEFMRIMKKP-NIYIWCNKKQILPYLDYFVGIHKCSFEILTWIKTNPIPT 122
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ L + Y +++K
Sbjct: 123 CGRNYMNDKEYCLYFRKGISLHTTYQT------------------GKTYWITPTNVKDKK 164
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPT KP ++ ++ +S+ PGD++ D F GSGT+ +K+L R++IGIE DY +
Sbjct: 165 -LYGHPTIKPIDIIKTLIQNSSAPGDVVFDCFLGSGTTAVASKELERNYIGIEKNSDYYE 223
Query: 260 IATKRI 265
I +R+
Sbjct: 224 ITLQRL 229
>gi|297379485|gb|ADI34372.1| Modification methylase [Helicobacter pylori v225d]
Length = 252
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/256 (22%), Positives = 94/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + Q D F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------DDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 117 NISRCTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|257142662|ref|ZP_05590924.1| site-specific DNA-methyltransferase [Burkholderia thailandensis
E264]
Length = 235
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 91/247 (36%), Gaps = 32/247 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWDKFSSF 78
+++++ LP S+D++F DPPY+ R + TD
Sbjct: 2 DALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSDTKTVYTDFESDNMDQ 61
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ + AWL CRR LKP G L + + + ++Q + VW K+
Sbjct: 62 RAWAFWCHAWLTECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTPGRT 121
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
R F E ++WAS MR + RL
Sbjct: 122 RPRRGGFAQQAEFVVWASRG--------------------AMRDCEVYLPGVFPCRL--- 158
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
K H T+KP + ++ G ++ D F GSGT A A++ +IG E Y
Sbjct: 159 PLPKQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREASLHWIGCETNAAYH 217
Query: 259 DIATKRI 265
IA R+
Sbjct: 218 AIALHRL 224
>gi|325687751|gb|EGD29772.1| prophage LambdaSa04, DNA methylase [Streptococcus sanguinis SK72]
Length = 422
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 102/260 (39%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNS--ISVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + + L K +L+ DPPYN+ + + + D D
Sbjct: 172 KHRVICGDSTKLETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKN------DDMSD--- 222
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F + + ++ + +++V + ++ F++ VW+K+
Sbjct: 223 --ADFYQFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRKAFKDAGFYLSGCCVWKKNAL 280
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + + D S
Sbjct: 281 VLGRSPYQW--QHEPVLYGWKQKGKHQWFSDRKQTTIWEYDRPKSS-------------- 324
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G +ILDPF GSG++ A + R GIE+ +
Sbjct: 325 -----KEHPTMKPVQLMAYPIQNSSMRGTLILDPFLGSGSTLIAADQTGRVCYGIELDEK 379
Query: 257 YIDIATKRIASVQPLGNIEL 276
++D+ KR +++L
Sbjct: 380 FVDVIVKRYMEATEKSDVQL 399
>gi|116622013|ref|YP_824169.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116225175|gb|ABJ83884.1| DNA methylase N-4/N-6 domain protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 296
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 52/254 (20%), Positives = 87/254 (34%), Gaps = 57/254 (22%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
D++ + + + L LP ++VD+ DPPY +L S+VD + +
Sbjct: 4 LDQVTQMDCLKALADLPDQAVDVTLTDPPY----PNRLNLFSDSIVDGYAGLYLACKKTK 59
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y F + ++ + R + +++ S
Sbjct: 60 NYVVFFW----------SNDNIPQAPPGWYEVARHVWHKPDCKSITHYELIIVWSR---- 105
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ + S LR+
Sbjct: 106 ------------------------------------DYKRKTSRVWSIPILDYRSLRD-- 127
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
K HPTQKP L+ +L TK GD +LDPF G+GT+ K++RR FI I+ YI
Sbjct: 128 -WKPHPTQKPVRLIRYLLEQYTKEGDTVLDPFVGTGTTAVACKQMRRHFIAIDNDPAYIK 186
Query: 260 IATKRIASVQPLGN 273
+AT R+ + +
Sbjct: 187 MATARLTTRSKQDD 200
>gi|300853548|ref|YP_003778532.1| putative methylase [Clostridium ljungdahlii DSM 13528]
gi|300433663|gb|ADK13430.1| predicted methylase with a ParB-like nuclease domain [Clostridium
ljungdahlii DSM 13528]
Length = 414
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 49/270 (18%), Positives = 92/270 (34%), Gaps = 32/270 (11%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S V + + K +L DPPYN+ + D++ D
Sbjct: 168 KHRLICGDSTKTSDVEKLMNGKKANLCVTDPPYNVNYSAGKENERVIKNDSMDDK----- 222
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ F + VL ++ + + F + + VW K +
Sbjct: 223 ---SFHEFLLSAFKNIYSVLDDGAGAYIFHADTEGLNFRKAFKEAGFHLSSVCVWVKQSL 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +Q HE +++ + + N D +S
Sbjct: 280 VLG--RSDYQFQHEPVLYGWKPTGKHRWYSDRKQTTVWNFDRPSKSPD------------ 325
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP L++ + +S+ I+ +PF GSG++ ++ R IE+ +
Sbjct: 326 -------HPTMKPVPLIAYPIKNSSMTNCIVFEPFAGSGSTLIACEQTDRICYAIELDEK 378
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEP 286
Y D+ KR + L K
Sbjct: 379 YCDVIVKRYIEAAGDEGVFLIRDGKKIDYK 408
>gi|299132505|ref|ZP_07025700.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
gi|298592642|gb|EFI52842.1| DNA methylase N-4/N-6 domain protein [Afipia sp. 1NLS2]
Length = 247
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 65/270 (24%), Positives = 97/270 (35%), Gaps = 46/270 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ ++ P D+I ADPPY + A+
Sbjct: 2 TVLTGDCREIMP--PHGPFDMILADPPY-------------------------GDTSLAW 34
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D W+ R L G+LWV GS I +IVW K N
Sbjct: 35 DRRVEGWIALAREALNLTGSLWVFGSLRCFMATADRFTEAGLRIAQEIVWEKQNGTGFHN 94
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW------LIPICS 190
R + HE + P+ A +N DA Q
Sbjct: 95 DRF-KRVHELAVQFYPAETAWRDIYNDVQTTPDATARTVRRKQRPPHTGQIDAGHYVSHD 153
Query: 191 GSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
G RL RN G +HPT+KP +LL ++ +S G ++ D F GSG++G +
Sbjct: 154 GGPRLMRSVIYVRNCHGRAIHPTEKPSSLLEILIRTSCPEGGLVGDWFAGSGSAGEACRL 213
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R ++G E+ + A RIA+V P +
Sbjct: 214 SGRRYLGCEIDAAMAERACARIAAVLPFHD 243
>gi|327461138|gb|EGF07471.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK1057]
Length = 422
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 102/260 (39%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNS--ISVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + + L K +L+ DPPYN+ + + + D D
Sbjct: 172 KHRVICGDSTKLETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKN------DDMSD--- 222
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F + + ++ + +++V + ++ F++ VW+K+
Sbjct: 223 --ADFYQFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRKAFKDAGFYLSGCCVWKKNAL 280
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + + D S
Sbjct: 281 VLGRSPYQW--QHEPVLYGWKQKGKHQWFSDRKQTTIWEYDRPKSS-------------- 324
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G +ILDPF GSG++ A + R GIE+ +
Sbjct: 325 -----KEHPTMKPVQLMAYPIQNSSMRGTLILDPFLGSGSTLIAADQTGRVCYGIELDEK 379
Query: 257 YIDIATKRIASVQPLGNIEL 276
++D+ KR +++L
Sbjct: 380 FVDVIVKRYMEATEKSDVQL 399
>gi|270265405|ref|ZP_06193665.1| hypothetical protein SOD_n00250 [Serratia odorifera 4Rx13]
gi|270040660|gb|EFA13764.1| hypothetical protein SOD_n00250 [Serratia odorifera 4Rx13]
Length = 214
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 41/241 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + G+S+ V+ PA S+D I DPPY L G R S+ + W +S
Sbjct: 3 RYVLGDSVQVMSTFPAASIDFILTDPPY---LVGFTDRTGRSIANDTNGDWVLPAS---- 55
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLKPN + ++ + + + F I+ +V+ K +
Sbjct: 56 --------REMFRVLKPNSLMVSFYGWNRVDAFVSAWKAAGFRIVGHLVFTKHYAS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + G + G
Sbjct: 105 SAFVGYQHENAYILAKGRPPLP-----------------------AQPLGDVQSWEYTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP + L ++ S T+PG I+LDPF GSG++ A + R +IGIE+ DY
Sbjct: 142 RHHPTEKPVSSLQPLIESFTQPGAIVLDPFAGSGSTCVAAAQAGRRYIGIELLPDYHSTG 201
Query: 262 T 262
Sbjct: 202 C 202
>gi|3687316|emb|CAA05163.1| methylase [Lactococcus lactis]
Length = 296
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 109/291 (37%), Gaps = 44/291 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSS- 77
D I NSI ++K+ +S+ LI +D PY + L+ +S + + + K S
Sbjct: 4 DTIYNENSIDSIKKIETESIHLILSDIPYGISFADWDILHENTNSALGGSSPAQHKTGSG 63
Query: 78 ------------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
Y + +W RVLKP + ++ R L+
Sbjct: 64 FKMRGKPINGWSEADRKIPLEYQNWVESWAKEWFRVLKPGSSCFIFAGRRYAHRAIVGLE 123
Query: 120 NLNFWILNDIVWRKSNPM----------------------PNFRGRRFQNAHETLIWASP 157
N F + I W +S +R + E ++W +
Sbjct: 124 NSGFTFRDMIGWNRSKATLKAQRISKVYERRNDFENAEKLSEWRVGNLRPVFEPILWFTK 183
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRI 216
K G + + + N ++ LHPTQKP L+ +
Sbjct: 184 PYKQGGTIADNMLKHGVGAYNLEKWQTFSEKGDNYIEIPNLSSDRGLHPTQKPLVLMKAL 243
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ +T+ I+LDPF GSGT+ AK+L R ++G E+ +DY + + R+ +
Sbjct: 244 IELTTQENQIVLDPFSGSGTTLVAAKELNRHYLGFEIDKDYYNTSLNRLNT 294
>gi|297526129|ref|YP_003668153.1| DNA methylase N-4/N-6 domain protein [Staphylothermus hellenicus
DSM 12710]
gi|297255045|gb|ADI31254.1| DNA methylase N-4/N-6 domain protein [Staphylothermus hellenicus
DSM 12710]
Length = 339
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 32/293 (10%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ I G+S + L +P++SV L+ PPY + + ++
Sbjct: 58 RHIIYHGDSRN-LSFIPSESVHLVVNSPPYWIVKKYKPIPGQLGVIKDYNK--------- 107
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSY-----HNIFRIGTMLQNLNFWILNDIVWRKS 134
+ RVL P G L ++ R + + + + +
Sbjct: 108 -FLEELGKVWREVYRVLVPGGRLIIVVGDVLLPRRKYGRHRVIPLHSDIIKQCTSIGFEY 166
Query: 135 NPMPNFRGRRFQNAHETLIWAS--PSPKAKGYTFNYDAL--KAANEDVQMRSDWLIPICS 190
+ + N + S + +
Sbjct: 167 LAPIIWFKIGNVSREVPGRSGFLGKPYMPNAVIKNDIEYILMFRKPGYRSVSRVRMKLSV 226
Query: 191 GSERLRNK----------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
E+L + + K HP P L R++ + D +LDPF G+GT+
Sbjct: 227 IPEKLFKEWFTQIWRLLGESTKHHPAPFPLELAERLIRMYSYVYDTVLDPFMGTGTTLLA 286
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQP--LGNIELTVLTGKRTEPRVAFN 291
A + R+ IG+E+ +Y+ A R+ G E+ + +
Sbjct: 287 AARTGRNSIGVEIDPEYVKYAYNRLRKEAQSLFGKREIILKEMSNEQSYQGMG 339
>gi|190570706|ref|YP_001975064.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190570760|ref|YP_001975118.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190571683|ref|YP_001976041.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019711|ref|ZP_03335516.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190356978|emb|CAQ54366.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357032|emb|CAQ54425.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357955|emb|CAQ55418.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994752|gb|EEB55395.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 410
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 93/265 (35%), Gaps = 36/265 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L D+ DPPYN+ R D +++
Sbjct: 165 HRIYCGDSSVVESYKALLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 217
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 218 -EKYELFLYDICSHILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 274
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 275 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPT------- 315
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ +
Sbjct: 316 --HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 373
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+D+ KR G + TGK
Sbjct: 374 VDVTIKR--WQVYTGREAILSGTGK 396
>gi|41057660|ref|NP_958114.1| gp10 [Burkholderia phage Bcep43]
gi|40737647|gb|AAR89300.1| gp10 [Burkholderia phage Bcep43]
Length = 262
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 53/258 (20%), Positives = 84/258 (32%), Gaps = 30/258 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA-- 80
+ G+ + ++ LP SVD++ D PY +WD F+A
Sbjct: 11 LYWGDCLDLMRLLPDASVDMVMCDLPYGT----------------TACAWDSVLPFDALW 54
Query: 81 --YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM---------LQNLNFWILNDI 129
Y ++ +P + V ++ ++
Sbjct: 55 AQYRRIVKSRGAVVLTAAQPFTSALVASNFEWFKYDWVWAKNRPTNFAHAKNKPMPKHES 114
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
V S + + K T+N DA+ + +
Sbjct: 115 VLVFSPGTTVHASQFKLRMTYNPQGLTRIEPRKMKTYNTDAMFSKRGSHGEYTQEFTNYP 174
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
D LHPT KP AL+ ++ + T GD +LD GSGT+G R FI
Sbjct: 175 HSLLEFST-DQLNLHPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTTGVACINTGRRFI 233
Query: 250 GIEMKQDYIDIATKRIAS 267
G+E DY IAT R+
Sbjct: 234 GMEKDADYALIATGRMRE 251
>gi|227484714|ref|ZP_03915030.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Anaerococcus lactolyticus ATCC 51172]
gi|227237299|gb|EEI87314.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Anaerococcus lactolyticus ATCC 51172]
Length = 321
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 67/323 (20%), Positives = 112/323 (34%), Gaps = 90/323 (27%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II ++IS L++ P K+ D PPY + + + S E
Sbjct: 10 NYIINLDAISALKEFPDKTFDCCITSPPYYGLRDYKA-----------EGQIGREESPEE 58
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG--------------SYHNI--------------- 111
Y +RVLK GTLW++ NI
Sbjct: 59 YLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNIEGRSGQKESITEKLS 118
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ L+ +++ +DI+W K N MP R ++E + S + K
Sbjct: 119 GYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSKARK 178
Query: 161 AKGYTFNYDALKAA--------------NEDVQMR----------------------SDW 184
Y +N+DA+K N + ++ +
Sbjct: 179 ---YFYNFDAMKEPIKEISKKRYMRARGNNNKYLQEGTGAKRQSINEAREYGEYIGDNVP 235
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ + H P L+ + + +ILDPF GSGT G VA ++
Sbjct: 236 KFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIRM 295
Query: 245 RRSFIGIEMKQDYIDIATKRIAS 267
R +IGI++ +DY IA +RI
Sbjct: 296 DREYIGIDINKDYCQIAKERIEK 318
>gi|190570854|ref|YP_001975212.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019341|ref|ZP_03335148.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357126|emb|CAQ54537.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995450|gb|EEB56091.1| Phage related DNA methylase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 406
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 54/265 (20%), Positives = 92/265 (34%), Gaps = 36/265 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L D+ DPPYN+ R D +++
Sbjct: 165 HRIYCGDSSVVESYKALLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 217
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 218 -EKYELFLYDICSHILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 274
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 275 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPT------- 315
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ +
Sbjct: 316 --HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 373
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+D+ KR G + GK
Sbjct: 374 VDVTIKR--WQVYTGREAILSGAGK 396
>gi|323358512|ref|YP_004224908.1| adenine specific DNA methylase Mod [Microbacterium testaceum
StLB037]
gi|323274883|dbj|BAJ75028.1| adenine specific DNA methylase Mod [Microbacterium testaceum
StLB037]
Length = 324
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 60/309 (19%), Positives = 99/309 (32%), Gaps = 70/309 (22%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS------ 76
I ++++V S L++ DPP+N + A D+ +
Sbjct: 17 IHHADNLTVTPAYADGSFALVYLDPPFNTGRTRSKAVESATWTPAADDAEGASTPDASSP 76
Query: 77 -----------------------------------------SFEAYDA-------FTRAW 88
YD F
Sbjct: 77 DAPPEDVASDPNMLTFPEEEPPPPPVVQRGFHGREYARLRGDLRTYDDRFDDYWGFLEPR 136
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
L+ R+L +GTL++ Y + M L + RR+
Sbjct: 137 LIEAWRLLADDGTLYLHLDYREVHYAKVMCDALFGRDKFLNELIWAYDYGAKTKRRWPTK 196
Query: 149 HETLIWASPSPKAKGYTFNYDALKAAN-----------EDVQMRSDWLIPICSGSERLRN 197
HET++ +P + + + W I + R
Sbjct: 197 HETILVYVKNPATYFFDSDAVDREPYMAPGLVTAEKAARGKMPTDVWWHTIVPTTGR--- 253
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PTQKPE +L R++ +S++PGD +LD F GSGT GAVA L R + I+ D
Sbjct: 254 --EKTGYPTQKPEGVLRRMVQASSRPGDRVLDMFAGSGTLGAVAAPLGRDSVLIDDNADA 311
Query: 258 IDIATKRIA 266
+ + KR+
Sbjct: 312 VAVMRKRLE 320
>gi|304383755|ref|ZP_07366214.1| type II restriction-modification system methylation subunit
[Prevotella marshii DSM 16973]
gi|304335279|gb|EFM01550.1| type II restriction-modification system methylation subunit
[Prevotella marshii DSM 16973]
Length = 427
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 56/337 (16%), Positives = 97/337 (28%), Gaps = 60/337 (17%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +I G+S + L +P KSV LI PPY +
Sbjct: 3 IKTIHTLINGDSRN-LSLMPDKSVHLIITSPPYWQLKDY-----------GSDGQIGFHD 50
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------------------------- 110
S+E+Y C RVL L +
Sbjct: 51 SYESYINNLNMVWAECNRVLHDGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCEALG 110
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ +G ++ + P R + +E ++ KA
Sbjct: 111 MDYMGAVIWQKQTTMNTTGGGAVMGSFPYPRNGILKIDYEFILIFKKQGKAPVPAIEQKQ 170
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+D G++ + H PE L R++ + G+ + DP
Sbjct: 171 YSEMTKDEWNTFFASHWNFGGAK-------QDGHIAVFPEELPHRLIKMFSFAGETVFDP 223
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDI---------ATKRIASVQPLGNIELTVLTG 281
F GSGT+ A+ L+R+ IG E+ DY + + +
Sbjct: 224 FMGSGTTAFAARNLQRNSIGYEINPDYKKYYEEKVASSFSFGNVEYRYRNDRSVFDMDEK 283
Query: 282 KRTEPRVA-----FNLLVERGLIQPGQILTNAQGNIS 313
K+T P + +E +Q G + +
Sbjct: 284 KKTLPYIFSDPHKMESKIEIKKLQFGSRI-DKDKKER 319
>gi|134288033|ref|YP_001110197.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134132683|gb|ABO60309.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
G4]
Length = 252
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 41/258 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++G+ + +LE +P S+D++ D PY WD A
Sbjct: 9 LMQGDCLELLETIPDNSIDMVCCDMPYGT----------------TNCRWD------ATL 46
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
R W RRV N + + +G + W+ +++W+K++ +
Sbjct: 47 DLRRLW-AQYRRVTTENAAIVLFAQTPFDKVLGV---SNLEWLRYELIWQKTHATGHLNA 102
Query: 143 RRFQ-NAHETL-IWASPSPKAKGYTFNYDALKAANEDVQMRSDW--------LIPICSGS 192
++ AHE + ++ + P K + + S +
Sbjct: 103 KKMPMKAHENILVFYNKLPTYNPQKTTGHIRKTSVKRRDNTSVYGEQNFVELSYESTDRH 162
Query: 193 ERL-----RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R ++ LHPTQKP AL+ ++ + T GD +LD GSGT+G ++L R
Sbjct: 163 PRSVLTFPKDTQRIALHPTQKPLALIEWLVSTFTNEGDAVLDNCMGSGTTGEACQRLGRR 222
Query: 248 FIGIEMKQDYIDIATKRI 265
F+G+E+ + + +A+ RI
Sbjct: 223 FVGMELDESHFAVASSRI 240
>gi|307942430|ref|ZP_07657781.1| DNA methylase [Roseibium sp. TrichSKD4]
gi|307774716|gb|EFO33926.1| DNA methylase [Roseibium sp. TrichSKD4]
Length = 373
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 99/349 (28%), Gaps = 109/349 (31%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ + +L LP +SVD + PPY + V + +
Sbjct: 14 LHVGDVLEMLATLPGESVDCVVTSPPYWGLRDY-----------GVEGQIGLEPTLAEHI 62
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHN-------------------------------- 110
A A RRVLKP GTLW+
Sbjct: 63 ALMVAVFEEVRRVLKPTGTLWLNYGDCYASSPNGRSAADTKAEGNDNRTFRDKPFSTVQG 122
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
R+ LQ +W+ ++I+W K NPMP R AHE + S S K
Sbjct: 123 VLKPKDLCMIPNRLAIALQEAGWWVRSEIIWAKPNPMPESIRDRPATAHEKIFLLSKSAK 182
Query: 161 AKGYTFNYDALKAANEDVQMRSDW-------LIPICSGSERLRNKD------GEKLHP-- 205
Y N + W + R ++ + + H
Sbjct: 183 -YFYDANAVRQGQHKVSKHTVAGWASGPGAHDTIKHNRGSRSKDTNSSASPPNSRPHSLS 241
Query: 206 ----------------------------------------TQKPEALLSRILVSSTKPGD 225
P AL R + + G
Sbjct: 242 EFEARHNADYPGRNLRNWEPEAAQPDVWKIATSPFPGAHFATFPLALAQRCVKAGCPKGG 301
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
++LDPF G+GT+ A IE+ +Y IA +RI +
Sbjct: 302 VVLDPFGGAGTTAIAALAHGCQAQLIEINPEYARIAGERIEQCFMGPDE 350
>gi|325690435|gb|EGD32438.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK115]
Length = 419
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 49/260 (18%), Positives = 102/260 (39%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNS--ISVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + + L K +L+ DPPYN+ + + + D D
Sbjct: 172 KHRVICGDSTKLETYQLLLGDKKANLVVTDPPYNVNVEETAGKIKN------DDMSD--- 222
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F + + ++ + +++V + ++ F++ VW+K+
Sbjct: 223 --ADFYQFLFNMFVNVEQSMEDDASIYVFHADTEGLNFRRAFKDAGFYLSGCCVWKKNAL 280
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + + D S
Sbjct: 281 VLGRSPYQW--QHEPVLYGWKQKGKHQWFSDRKQTTIWEYDRPKSS-------------- 324
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G ++LDPF GSG++ A + R GIE+ +
Sbjct: 325 -----KEHPTMKPVQLMAYPIQNSSMRGTLVLDPFLGSGSTLIAADQTGRICYGIELDEK 379
Query: 257 YIDIATKRIASVQPLGNIEL 276
++D+ KR +++L
Sbjct: 380 FVDVIVKRYMEATEKTDVKL 399
>gi|218133429|ref|ZP_03462233.1| hypothetical protein BACPEC_01294 [Bacteroides pectinophilus ATCC
43243]
gi|217990804|gb|EEC56810.1| hypothetical protein BACPEC_01294 [Bacteroides pectinophilus ATCC
43243]
Length = 418
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 35/267 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+SI +KL +L+ DPPYN+ + + + D
Sbjct: 165 KHRVICGDSILPETYDKLMDGQKANLVLTDPPYNVNVEETAGKIKN----------DNMP 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + ++ + +++V + ++ F++ +W+K+
Sbjct: 215 DEDFY-KFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K + Y+ +
Sbjct: 274 VLGRSPYQWQHE-PCLFGWKKGGKHQWYSDRKQTTIWEYD-------------------- 312
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL++ + +S I+LDPF GSG++ ++ R GIE+ +
Sbjct: 313 RPKASKDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELDEK 372
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
++D+ R + +
Sbjct: 373 FVDVIVNRYIEQCGSDADVFVIRDDMK 399
>gi|254804607|ref|YP_003082828.1| putative type II DNA modification methylase [Neisseria meningitidis
alpha14]
gi|15982212|emb|CAC85161.1| unnamed protein product [Neisseria meningitidis]
gi|254668149|emb|CBA04786.1| putative type II DNA modification methylase [Neisseria meningitidis
alpha14]
Length = 461
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 60/270 (22%), Positives = 92/270 (34%), Gaps = 49/270 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ + VL+ +P SV L F PPY + +Y S+E
Sbjct: 186 KNVVVNSDVRDVLQLVPEDSVHLTFTSPPYYNARDYSIY-----------------PSYE 228
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------------IGTMLQNLNFW 124
AY F + R+ K L V S + R + L + +
Sbjct: 229 AYLVFLQEVFKEIHRITKEGRFLIVNTSPVIVPRISRAHSSKRYPIPFDLHHRLIQIGWE 288
Query: 125 ILNDIVWRKS-NPMPNFRGRRFQNA----------HETLIWASPSPKAK-GYTFNYDALK 172
++DIVW K + N G Q+ E L+ + N +
Sbjct: 289 FIDDIVWMKPEYSVKNRIGGFQQHRKPLAYKPNSVTEYLMVYRKQTDRLLDWNMNQYDKQ 348
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
E + + +K+H P L RI+ + D++ DPF
Sbjct: 349 TIEESKVADGFETTNVWQIHPK-----SDKVHSAIFPADLCKRIVEYYSFKDDLVFDPFG 403
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
GSGT G VAKKL R F E + Y +
Sbjct: 404 GSGTLGRVAKKLGRHFFLTEKDEKYFEYMQ 433
>gi|153814252|ref|ZP_01966920.1| hypothetical protein RUMTOR_00461 [Ruminococcus torques ATCC 27756]
gi|145848648|gb|EDK25566.1| hypothetical protein RUMTOR_00461 [Ruminococcus torques ATCC 27756]
Length = 418
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 35/267 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+SI +KL +L+ DPPYN+ + + + D
Sbjct: 165 KHRVICGDSILPETYDKLMDGQKANLVLTDPPYNVNVEETAGKIKN----------DNMP 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + ++ + +++V + ++ F++ +W+K+
Sbjct: 215 DEDFY-KFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K + Y+ +
Sbjct: 274 VLGRSPYQWQHE-PCLFGWKKGGKHQWYSDRKQTTIWEYD-------------------- 312
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL++ + +S I+LDPF GSG++ ++ R GIE+ +
Sbjct: 313 RPKASKDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELDEK 372
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
++D+ R + +
Sbjct: 373 FVDVIVNRYIGQCGSDADVFVIRDDMK 399
>gi|154504827|ref|ZP_02041565.1| hypothetical protein RUMGNA_02337 [Ruminococcus gnavus ATCC 29149]
gi|153794710|gb|EDN77130.1| hypothetical protein RUMGNA_02337 [Ruminococcus gnavus ATCC 29149]
Length = 418
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 35/267 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+SI E+L +L+ DPPYN+ + + + D
Sbjct: 165 KHRVICGDSILPETYERLMDGRKANLVLTDPPYNVNVEETAGKIKN----------DNMP 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + ++ + +++V + ++ F++ +W+K+
Sbjct: 215 DEDFY-KFLFAAFVNMEQSMEQDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNAL 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K + Y+ +
Sbjct: 274 VLGRSPYQWQHE-PCLFGWKKGGKHQWYSDRKQTTIWEYD-------------------- 312
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL++ + +S I+LDPF GSG++ ++ R GIE+ +
Sbjct: 313 RPKASKDHPTMKPVALMAYPIQNSCMSNCIVLDPFLGSGSTLIACEQTHRICYGIELDEK 372
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
++D+ R + +
Sbjct: 373 FVDVIVNRYIEQCGSDADVFVIRDDMK 399
>gi|23752321|ref|NP_705636.1| gp10 [Burkholderia phage Bcep781]
gi|23507188|gb|AAN38011.1| gp10 [Burkholderia phage Bcep781]
Length = 262
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/258 (20%), Positives = 84/258 (32%), Gaps = 30/258 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA-- 80
+ G+ + ++ LP SVD++ D PY +WD F+A
Sbjct: 11 LYWGDCLDLMRLLPDASVDMVMCDLPYGT----------------TACAWDSVLPFDALW 54
Query: 81 --YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM---------LQNLNFWILNDI 129
Y ++ +P + V ++ ++
Sbjct: 55 AQYRRIVKSRGAVVLTAAQPFTSALVASNFEWFKYDWVWAKNRPTNFAHAKNKPMPKHES 114
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
V S + + K T+N DA+ + +
Sbjct: 115 VLVFSPGTTVHASQSKLRMTYNPQGLTRIEPRKMKTYNTDAMFSKRGSHGEYTQEFTNYP 174
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
D LHPT KP AL+ ++ + T GD +LD GSGT+G R FI
Sbjct: 175 HSLLEFST-DQLNLHPTAKPVALMEYLIRTYTSEGDTVLDNCMGSGTTGVACINTGRRFI 233
Query: 250 GIEMKQDYIDIATKRIAS 267
G+E DY IAT R+
Sbjct: 234 GMEKDADYALIATGRMRE 251
>gi|321272264|gb|ADW80149.1| putative DNA methylase [Wolbachia endosymbiont wVitA of Nasonia
vitripennis phage WOVitA1]
gi|321272321|gb|ADW80203.1| putative DNA methylase [Wolbachia endosymbiont wVitB of Nasonia
vitripennis phage WOVitB]
Length = 404
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 94/265 (35%), Gaps = 36/265 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L D+ DPPYN+ R D +++
Sbjct: 163 HRIYCGDSSVVESYKALLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 215
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + + I+W K++
Sbjct: 216 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKVFEEAGGKWSTFIIWAKNHFT 272
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 273 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPT------- 313
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ +
Sbjct: 314 --HNTLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 371
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+D+ KR G + TGK
Sbjct: 372 VDVTIKR--WQVYTGREAILSGTGK 394
>gi|87199473|ref|YP_496730.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
gi|87135154|gb|ABD25896.1| DNA methylase N-4/N-6 [Novosphingobium aromaticivorans DSM 12444]
Length = 435
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 18/249 (7%)
Query: 21 DKIIKGNSISV--LEKL--PAKSVDLIFADPPYNLQLNGQLY-RPDHSLVDAVTDSWDKF 75
++ G+ L + K++D F DPPYN+++NG R H +
Sbjct: 178 HRLGCGDGRDAAFLRAVVGEGKAIDCAFLDPPYNVKINGHANARGRHREFAMASGE---- 233
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ A+ F L A V +P +V + ++ + + +LN VW KSN
Sbjct: 234 MTTAAFRTFLAETLGASAAVSRPGAVHFVCMDWRHMDDVSAAATPVYDDLLNICVWNKSN 293
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
G +++ HE + + +A++ + W S R
Sbjct: 294 AGM---GSLYRSKHEMVFVY-----RVPGAPHTNAVELGRHGRNRTNVWDYASV-NSMRG 344
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ LHPT KP A+++ + T+ GD++LD F GSGT+ A+++ R+F GI++
Sbjct: 345 SRREDLALHPTVKPVAMVADAICDVTRQGDLVLDIFSGSGTTLIAAERVGRAFRGIDIDP 404
Query: 256 DYIDIATKR 264
Y+D+A R
Sbjct: 405 AYVDVALDR 413
>gi|257792342|ref|YP_003182948.1| DNA methylase N-4/N-6 domain-containing protein [Eggerthella lenta
DSM 2243]
gi|257476239|gb|ACV56559.1| DNA methylase N-4/N-6 domain protein [Eggerthella lenta DSM 2243]
Length = 237
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 34/261 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I G+ V+ ++ S + DPPY + + + D ++
Sbjct: 6 VIAGDMFDVIGRVEPASCRCVLIDPPYMIG----------TQSVHRDNMIDPWADLMNGA 55
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F R + A R L +G +W+ ++ + I + + + +VW K P G
Sbjct: 56 RFYREVIDAVRPKLTKDGAMWLFMNWRGLPGIYKASCDAKWLPASCMVWSKDWPG---TG 112
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
+ +HE + + + D + + R
Sbjct: 113 DPLRASHELCLLYTCDGFKRPNAKTLD-------------VQTFKLVPTAHR-------- 151
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+H QKP LL +L +T GD +LD F GSG++G A + R F+GIE ++A
Sbjct: 152 VHSAQKPVPLLRMMLDFTTARGDKVLDCFCGSGSTGVAAVSMGRRFVGIEANAAIAEVAR 211
Query: 263 KRIASVQPLGNIELTVLTGKR 283
+RI G + +T GKR
Sbjct: 212 RRIEGEASQGQLFVTSEEGKR 232
>gi|150390344|ref|YP_001320393.1| DNA methylase N-4/N-6 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950206|gb|ABR48734.1| DNA methylase N-4/N-6 domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 424
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/268 (19%), Positives = 99/268 (36%), Gaps = 35/268 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I G+S + L +L+ DPPYN+ A T D
Sbjct: 180 RHRLICGDSTKEDTYKILMDGKKANLVVTDPPYNVAYE----------AKAGTIKNDDMK 229
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S + Y +F A ++ + +++V + + F++ +W K +
Sbjct: 230 SDDFY-SFLLAAFKNMHSSMELDASIYVFHADTEGLNFRKSFVDAGFYLSGVCIWAKQSI 288
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + + N D +SD
Sbjct: 289 VLGRSPYQW--KHEPILFGWRKDGKHRWYSDRKQNTIWNFDRPTKSD------------- 333
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
LHPT KP L + + +S+ IILDPF GSG++ ++ R IE+ +
Sbjct: 334 ------LHPTMKPVELCAYPIQNSSMSNCIILDPFGGSGSTLMACEQTGRICYSIELDEK 387
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRT 284
Y D+ KR + +G++T
Sbjct: 388 YTDVIVKRYIEYAGTDEDVFLIRSGEKT 415
>gi|255505540|ref|ZP_05346737.3| putative adenine specific DNA methyltransferase [Bryantella
formatexigens DSM 14469]
gi|255267130|gb|EET60335.1| putative adenine specific DNA methyltransferase [Bryantella
formatexigens DSM 14469]
Length = 467
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 23/266 (8%)
Query: 20 KDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ + L A S DLI DPPYN+ + + S T + ++
Sbjct: 184 EHRLMCGDATDFSDIGILMAGSEADLILTDPPYNVDYEAKDKSLERSYKRNTTRTTNEIL 243
Query: 77 S----FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ + + F V K ++V + F + ++W
Sbjct: 244 NDKMAEDDFYNFLYRIFSNYCDVAKAGAAVYVFHADSEGLAFRQAFAAAGFKLAEVLIWE 303
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY-DALKAANEDVQMRSDWLIPICSG 191
K+ + + + HE +++ A + + +D+ ++ + +
Sbjct: 304 KNQFVIGRQDYHW--RHEPILYGWKEGTAHYFIDDRSQDNIFIEDDIDFKAMKKDDLVAY 361
Query: 192 SERLRN--------KDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
ER+R + +K +HPT KP AL+ R++ +S++ G+I+ D F GSGT+
Sbjct: 362 IERIREAFMARTSVQFEKKPARSDMHPTMKPVALVGRLMANSSRRGEIVADFFGGSGTTL 421
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKR 264
A++L R +E+ Y D+ KR
Sbjct: 422 IAAEQLGRVAYLMEISPKYCDVIIKR 447
>gi|206890953|ref|YP_002248361.1| modification methylase MjaI [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742891|gb|ACI21948.1| modification methylase MjaI [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 446
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/271 (18%), Positives = 90/271 (33%), Gaps = 45/271 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
KII G+S ++++ +SV LI PPY + + S + ++E
Sbjct: 5 HKIIIGDSR-WMKEVADESVHLIVTSPPYWQLKDY----GNGSQI-------GFNDTYEE 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------------------IFRI 114
Y C RVL L + +
Sbjct: 53 YINNLNLVWKECHRVLHKGCRLCINIGDQFARSVYYGRYKVIPIRTEIIKFCETIGFDYM 112
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
G ++ P R + +E ++ +
Sbjct: 113 GAIIWQKVTTCNTTGGATVMGSYPYPRNGILKLDYEFILIFKKYGNPPKVSKEIKEKSKL 172
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
++ +G + +K H PE L R++ + G+ +LDPF GS
Sbjct: 173 TDE------EWKQYFTGHWNFSGEKQDK-HLAMFPEELPKRLIKMFSFVGETVLDPFLGS 225
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
GT+ VA+KL R+ IG E+ ++++ I +++
Sbjct: 226 GTTSLVARKLNRNSIGYEINENFLSIIKEKL 256
>gi|254454493|ref|ZP_05067930.1| DNA methylase N-4/N-6 [Octadecabacter antarcticus 238]
gi|198268899|gb|EDY93169.1| DNA methylase N-4/N-6 [Octadecabacter antarcticus 238]
Length = 425
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 16/265 (6%)
Query: 21 DKIIKGNS--ISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+I G+ + L+++ + VD F DPPYN++++G A+
Sbjct: 172 HRIGCGDGRDLDFLKEVVGQGALVDAAFLDPPYNVKISGHANAKGRHREFAMAS---GEM 228
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ +A+ F L C V + +V + +I + + LN VW KSN
Sbjct: 229 TQQAFVQFLEETLGPCAAVSRSGAVHFVCMDWRHIDELSQAGSTVYDSRLNICVWNKSNA 288
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G +++ HE + G + + ++ + W + R
Sbjct: 289 GM---GSLYRSKHELIFVY-----RVGAEQHLNNVELGKHGRNRTNVWNYASVNSLAGSR 340
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++D LHPT KP A+++ + TK GDI+LD F GSGT+ ++++ R F GIE+
Sbjct: 341 SED-LALHPTVKPTAMVADAIQDVTKRGDIVLDIFLGSGTTLIASERVGRKFRGIELDPG 399
Query: 257 YIDIATKRIASVQPLGNIELTVLTG 281
Y+D+A +R ++ LT G
Sbjct: 400 YVDVAIERWRAMTNKEPKLLTRSEG 424
>gi|239908245|ref|YP_002954986.1| hypothetical protein DMR_36090 [Desulfovibrio magneticus RS-1]
gi|239798111|dbj|BAH77100.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 221
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 33/244 (13%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I+G+ + + ++P SV L+ DPPY R + ++ + + E
Sbjct: 5 IEGDCLEHIHEIPDGSVALLLTDPPYGCTFRSISDRTNRTIAN---------DNPEDATR 55
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
+ L +K + + V + ++++ + VW+KS+
Sbjct: 56 ILKESLEQLYPKMKDDSYIVVFSGDKMLADFINIIKSAGYCYQGVAVWKKSHHTQGSLIS 115
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+ E +I+A+ K Y D + N +
Sbjct: 116 GLRPITEKIIYATKG-KPVLYDAICDHFEYPNTK-----------------------NEF 151
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
H T+KP LL ++ + T PGD ++D F GSG+S AK + R++ G + D
Sbjct: 152 HQTEKPAGLLRELIGAMTVPGDCVVDCFAGSGSSVVQAKAMGRNWWGCVLDPDDYQNGYM 211
Query: 264 RIAS 267
R+
Sbjct: 212 RLNE 215
>gi|15611318|ref|NP_222969.1| type II DNA modification (methyltransferase [Helicobacter pylori
J99]
gi|4154765|gb|AAD05824.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 252
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWV-------------IGSYHNIFRIGTMLQNLNFWILNDI 129
+ + WL C K L + +G+ I + N I N+
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADITIVAKECGWKYQNTIIWNES 116
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ ++ A + K + + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRKKQTSTMSREEFLLYTNGLWNFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|308184066|ref|YP_003928199.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
SJM180]
gi|308059986|gb|ADO01882.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
SJM180]
Length = 252
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVL+ DL PPYNL + D F +++ Y
Sbjct: 12 LYHGD-VSVLKTFEKGFYDLCVTSPPYNLSIEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIVLAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPKRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|254252471|ref|ZP_04945789.1| DNA modification methylase [Burkholderia dolosa AUO158]
gi|124895080|gb|EAY68960.1| DNA modification methylase [Burkholderia dolosa AUO158]
Length = 344
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 68/346 (19%), Positives = 111/346 (32%), Gaps = 103/346 (29%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
W + +G+ ++ + A V I PPY L L + +
Sbjct: 1 MTWLNHSHRGDCRDLMRAMIADGVRVQTIVTSPPYW-GLRSYLPEGHPDKHREI----GQ 55
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH------------------------- 109
+ + R++L +GTLW+
Sbjct: 56 EPTLREFIDTLVGVFDLARQLLADDGTLWLNMGDSYAANRTYQVASTLMNGDATNQAQAA 115
Query: 110 ------------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
+R+ LQ +++ DI+W K NPMP R AHE
Sbjct: 116 GGRGMKVPDGLKPKDLVGQPWRLAFALQEAGWYLRQDIIWHKPNPMPESVRDRCTKAHEY 175
Query: 152 LIWASPSPKAKGYTFNYDAL---------------------------------------- 171
L S ++ Y F+ DA+
Sbjct: 176 LFLLSK---SERYYFDQDAILEPVSANTHARLSQNVQAQIGSARANGGAKTNGNMKAVGR 232
Query: 172 ---KAANEDVQMRSDWLIPICSGSER-------LRNKDGEKLHPTQKPEALLSRILVSST 221
A+ S +ER + + H PEAL+ +++ +
Sbjct: 233 KLAHDASGTKTNASFDEAMAIMPTERNRRSVWTIPTQSYSGAHFATFPEALVEPCVLAGS 292
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+PGD++ DPFFGSGT+G VA++L R FIG E+ +Y + R+
Sbjct: 293 RPGDVVFDPFFGSGTTGQVAQRLGRRFIGCELNPNYEPLQRDRLRQ 338
>gi|317179342|dbj|BAJ57130.1| adenine specific DNA methyltransferase [Helicobacter pylori F30]
Length = 252
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/249 (21%), Positives = 90/249 (36%), Gaps = 21/249 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCITSPPYNLSIEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ + WL C K L + L I + W+ N +
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 116
Query: 143 RRFQNAHETLI-----WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + +P F +A K + + + + +G
Sbjct: 117 NISRRTAWGSWLQASASYAIAPVELIVVFYKNAYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 198 KDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ ++L HP P L R + + D I DPF GSGT+ A L R +G+E++++
Sbjct: 177 ESKKRLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKE 236
Query: 257 YIDIATKRI 265
Y +++ KRI
Sbjct: 237 YCELSKKRI 245
>gi|91204182|emb|CAJ71835.1| site-specific DNA-methyltransferase (cytosine-N4-specific)
[Candidatus Kuenenia stuttgartiensis]
Length = 412
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 116/311 (37%), Gaps = 41/311 (13%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N+ + + ++ + G+S +L+++P +SVDLIF PPY RP++S +
Sbjct: 115 NKKKYILSNLRNTVGLGDSAQLLDEMPIESVDLIFTSPPYF------NARPEYSEYEEYE 168
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR---------------I 114
+ K R + C RVL + S + R +
Sbjct: 169 EYLFK----------MRQIIRRCHRVLTEGRFFVMNISPVLLRRASRNESSRRIAVPFDM 218
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ + ++DI+W K GR + A + + Y Y
Sbjct: 219 HRIFIEEGYDFIDDIIWLKPEGAGWATGRGRRFAADRNPLQYKAVPVTEYVLVYRKHSDL 278
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPG 224
D +R+ S+ + + HP P AL ++L + G
Sbjct: 279 LIDWFIRNHPDRNTVEASKISDGYEKTNIWKINPSTSSKHPAAFPIALAEKVLRYYSFKG 338
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
D++LDPF GSGT G A +L R F+ + +YIDI K I S + + + + +
Sbjct: 339 DVVLDPFAGSGTVGVAASELERRFVLFDNNPEYIDIIRKEIISWKNVNLNTVMWINCESV 398
Query: 285 EPRVAFNLLVE 295
+P L E
Sbjct: 399 KPVCKQKALFE 409
>gi|295097803|emb|CBK86893.1| DNA modification methylase [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 230
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 47/251 (18%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR---PDHSLVDAVTDSWDKFSSF 78
+ I G+ + V+ + PA++VD I DPPY + + R D+S
Sbjct: 3 RFILGDCVQVMSRFPARAVDFILTDPPYLVGYKDRTGRTLAGDNSS-------------- 48
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ + RVLK + + +++ + F ++ IV+ KS
Sbjct: 49 ----EWLQPACHEMYRVLKNDSLMVSFYAWNRADLFLNAWKTAGFRVVGHIVFAKSYAS- 103
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+ HE+ + D +
Sbjct: 104 --KSTFVGYTHESAYLLAKGRPQTPDRPIPDVIPW-----------------------KY 138
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G + HPT+KP L ++ S T+PG I+LDPF GSG++ A + R +IGIEM + Y
Sbjct: 139 TGNRHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYH 198
Query: 259 DIATKRIASVQ 269
+R+A V+
Sbjct: 199 AAGVRRLAQVE 209
>gi|14590480|ref|NP_142548.1| modification methylase [Pyrococcus horikoshii OT3]
gi|3256990|dbj|BAA29673.1| 309aa long hypothetical modification methylase [Pyrococcus
horikoshii OT3]
Length = 309
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 99/288 (34%), Gaps = 41/288 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI+ G S +E++P SV L+ PPY +A D FSS+E Y
Sbjct: 10 KIVFG-SSENMEEIPDNSVHLVVTSPPY---------------YNAPFDFPGLFSSYEEY 53
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS--------YHNIFRIGTMLQNLNFWILNDIVWRK 133
R RVL+P + Y + + ++ + + D + +
Sbjct: 54 LNLLRKVGKELMRVLQPGRYACFVTQDVRIEGKLYPIVSDLIHIMVHELGFEYQDKIIWR 113
Query: 134 SN--------------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD--ALKAANED 177
P N +E ++ K + +
Sbjct: 114 KPEGYIRISRRSGVLIQHPYPMYYYPDNIYEEVVIFKKPGKFDRSAVPPEIREKSKISIS 173
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
W + + L ++ K + PE L R++ + G+ +LDPF GSGT+
Sbjct: 174 KFQAEKWYLSVWDIKNVLPHEKWSK-YTAPFPEELAERLIRLYSYVGETVLDPFLGSGTT 232
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
V++KL R+ IG E+ + +I +R+ + R E
Sbjct: 233 CVVSRKLHRNCIGYEIDLELREIIEERLGLTTKSLTNFIKTGEEDRVE 280
>gi|167039889|ref|YP_001662874.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
sp. X514]
gi|300915302|ref|ZP_07132616.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
gi|307724787|ref|YP_003904538.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
sp. X513]
gi|166854129|gb|ABY92538.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X514]
gi|300888578|gb|EFK83726.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
gi|307581848|gb|ADN55247.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X513]
Length = 412
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 35/267 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +++ G+S L V +L+ DPPYN+ G + +
Sbjct: 166 KHRLVCGDSTKKETYNILMEGKVANLVVTDPPYNVNYEGTAGKIKNDN-----------M 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ +A+ F VL +G+++V + + F++ +W+K +
Sbjct: 215 ANDAFYQFLLDAFKNIESVLASDGSIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQSL 274
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K Y+ + I + +
Sbjct: 275 VLGRSPYQWQHE-PVLFGWKKKGKHLWYSDRKQS----------------TIWEFDKPKK 317
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N D HPT KP AL++ +++S+ I+LDPF GSG++ ++ R IE+ +
Sbjct: 318 NAD----HPTMKPIALIAYPIMNSSLTNSIVLDPFGGSGSTLIACEQTDRICYTIELDEK 373
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
Y D+ KR + +R
Sbjct: 374 YCDVIVKRYIEQVGTDKDVYVIREKRR 400
>gi|302383110|ref|YP_003818933.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
ATCC 15264]
gi|302193738|gb|ADL01310.1| DNA methylase N-4/N-6 domain protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 478
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/267 (20%), Positives = 97/267 (36%), Gaps = 19/267 (7%)
Query: 22 KIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRP--DHSLVDAVTDSWDKFS 76
+++ ++ + L + V ++F DPPYN+ + G + V A + D
Sbjct: 184 RLLCADATEPASFEQLLTGEQVRVVFTDPPYNVAIAGHVTSGGKHGEFVMASGEMTD--- 240
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + AF+ ++ R L G L+ + ++ LN IVW K
Sbjct: 241 --DEFTAFSTKVMMRARENLVDGGLLYYCMDHRHMEHTLDAASAAGLDRLNLIVWDKKAG 298
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G +++ HE + + + W +G +
Sbjct: 299 GM---GSFYRSRHELIFLFRKPGASHVNRVELGRH-----GRDRSNVWTYEGVNGFGAAK 350
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K ++HPT KP AL+ ++ T GD +LD F GSGT+ A+ + R E+
Sbjct: 351 AK-AREMHPTVKPLALVRDAILDCTAKGDAVLDLFSGSGTTVIAAENVGRRGFATELDPR 409
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
Y+D+ R + R
Sbjct: 410 YVDVGVLRWQEFTGREACLASTGQTFR 436
>gi|260170368|ref|ZP_05756780.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
D2]
gi|315918727|ref|ZP_07914967.1| DNA methylase [Bacteroides sp. D2]
gi|313692602|gb|EFS29437.1| DNA methylase [Bacteroides sp. D2]
Length = 326
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 17/284 (5%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
I + +K+I+G+ +++L +P KS+D+I D PY N D + A +++
Sbjct: 29 DIKPFVNKVIQGDCLNILPSIPDKSIDMILCDLPYGTTQNKWDSVIDLQALWA---EYER 85
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
T + + +L ++ + ++ V
Sbjct: 86 IIKDNGAIVLTAQGIFTAKLILSKEKLFKYKITWIKSKPTNFLNAKKQPLRKHEDVCVF- 144
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE- 193
+ + Y ++ +
Sbjct: 145 YKKQSVYNPQMTKGEAYDKGVRKDQYTGSYGEFKPQHVKSDGERYPNDVVFFEEDHDDFV 204
Query: 194 --RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ +GE HPTQKP L ++ + + PGDIILD GSG+ A R FIGI
Sbjct: 205 YVKTAESEGEVYHPTQKPVELGRYLIRTFSNPGDIILDNACGSGSFLLSAILENRRFIGI 264
Query: 252 EMK----------QDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
E DYI I RI+ + + +
Sbjct: 265 EKNEDVLLHRIQPTDYIKICMDRISETLKREEVTPSTRKLFKKP 308
>gi|146749645|gb|ABQ44382.1| ParB-like nuclease domain and DNA-modification methylase domain
protein [Lactobacillus reuteri]
Length = 402
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/276 (16%), Positives = 94/276 (34%), Gaps = 35/276 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLY 58
S+ N ++ + K ++ G++ + L V+L+ DPPYN+ +
Sbjct: 146 SELNKPTFSKAGDLWHLGKHTLLCGDATKKESFHKLLSDNKVNLVLTDPPYNVDYQSKAG 205
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + + + F A + + +++V +
Sbjct: 206 KIKNDH-----------QDNDKFYKFLLAAFQNMNTAMANDASIYVFHADTEGLNFRRAF 254
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
Q+ F++ +W+K + + ++ HE +++ + D
Sbjct: 255 QDAGFYLSGCCIWKKQSLVLGRSPYQW--QHEPVLYGWKHDGKHEWYTGRKESTIWEFDR 312
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+S K HPT KP LL+ +++ST +LDPF GSG++
Sbjct: 313 PKQS-------------------KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTL 353
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
++ R +E+ Y D+ R
Sbjct: 354 IACEQTNRICYMMELDPKYCDVIVNRYIKQVDSDQD 389
>gi|227544628|ref|ZP_03974677.1| ParB family nuclease domain and DNA-modification methylase domain
protein [Lactobacillus reuteri CF48-3A]
gi|300909456|ref|ZP_07126917.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
gi|227185394|gb|EEI65465.1| ParB family nuclease domain and DNA-modification methylase domain
protein [Lactobacillus reuteri CF48-3A]
gi|300893321|gb|EFK86680.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
Length = 408
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/276 (16%), Positives = 94/276 (34%), Gaps = 35/276 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLY 58
S+ N ++ + K ++ G++ + L V+L+ DPPYN+ +
Sbjct: 146 SELNKPTFSKAGDLWHLGKHTLLCGDATKKESFHKLLSDNKVNLVLTDPPYNVDYQSKAG 205
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + + + F A + + +++V +
Sbjct: 206 KIKNDH-----------QDNDKFYKFLLAAFQNMNTAMANDASIYVFHADTEGLNFRRAF 254
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
Q+ F++ +W+K + + ++ HE +++ + D
Sbjct: 255 QDAGFYLSGCCIWKKQSLVLGRSPYQW--QHEPVLYGWKHDGKHEWYTGRKESTIWEFDR 312
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+S K HPT KP LL+ +++ST +LDPF GSG++
Sbjct: 313 PKQS-------------------KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTL 353
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
++ R +E+ Y D+ R
Sbjct: 354 IACEQTNRICYMMELDPKYCDVIVNRYIKQVDSDQD 389
>gi|307636957|gb|ADN79407.1| adenine specific DNA methyltransferase [Helicobacter pylori 908]
gi|325995548|gb|ADZ50953.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
gi|325997144|gb|ADZ49352.1| Type II DNA modification enzyme/ methyltransferase [Helicobacter
pylori 2017]
Length = 252
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 27/252 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N + A A Y Y + M + + +G
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYK---RKKQTSTMSKEEFLLYTNGLWN 173
Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ ++L HP P L R + + D I DPF GSGT+ A L R +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPKRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233
Query: 254 KQDYIDIATKRI 265
+++Y +++ KRI
Sbjct: 234 EKEYCELSKKRI 245
>gi|217031482|ref|ZP_03436987.1| hypothetical protein HPB128_21g40 [Helicobacter pylori B128]
gi|298736790|ref|YP_003729320.1| putative adenine-specific DNA-methyltransferase [Helicobacter
pylori B8]
gi|216946682|gb|EEC25278.1| hypothetical protein HPB128_21g40 [Helicobacter pylori B128]
gi|298355984|emb|CBI66856.1| putative adenine-specific DNA-methyltransferase [Helicobacter
pylori B8]
Length = 252
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 27/252 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N + A A Y Y + M + + +G
Sbjct: 117 NISRRTAWGSWLQASTPYAIAPVELIVVFYKNEYK---RKKQTSTMSKEEFLLYTNGLWN 173
Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ ++L HP P L R + + D I DPF GSGT+ A L R +G+E+
Sbjct: 174 FSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233
Query: 254 KQDYIDIATKRI 265
+++Y +++ KRI
Sbjct: 234 EKEYCELSKKRI 245
>gi|226303534|ref|YP_002763492.1| DNA methyltransferase [Rhodococcus erythropolis PR4]
gi|226182649|dbj|BAH30753.1| probable DNA methyltransferase [Rhodococcus erythropolis PR4]
Length = 291
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/309 (18%), Positives = 107/309 (34%), Gaps = 70/309 (22%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
++ A E N +W ++++G+ L+ L +SVD + PPY Q + +
Sbjct: 8 AESEPFAAGERPNG-TKW--QVLQGDCRVALQDLAPESVDCVVTSPPYYWQRDYE----- 59
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------- 111
V + S + + R A R LK GT+++
Sbjct: 60 ------VAGQFGLEPSIDGFVDNLREAFAALRPALKNTGTVFLNLGDTYYSAKGRPHGTD 113
Query: 112 ------------------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+R+ LQ + + + I+W + + +P
Sbjct: 114 AKHRSRRLPGLRAVDGPGLGLPRKSLIGIPWRVALALQEDGWTLRSTIIWVRKSAIPEPT 173
Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+ +E + S SPK + EDV + G+
Sbjct: 174 SKDRPWRKYEHIFLFSKSPK----YYFDREGLNGEEDVWFIEPDRKSLARGT-------- 221
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
H P L+ R + S G ++LDPF G GT+ VA + RS IG+E+ ++ +
Sbjct: 222 ---HYAPYPRKLVERCINSGCPEGGVVLDPFLGGGTTMYVADAMGRSSIGVELNPEFCSL 278
Query: 261 ATKRIASVQ 269
+ +++
Sbjct: 279 VADNMTAME 287
>gi|261879520|ref|ZP_06005947.1| type II restriction-modification system methylation subunit
[Prevotella bergensis DSM 17361]
gi|270333837|gb|EFA44623.1| type II restriction-modification system methylation subunit
[Prevotella bergensis DSM 17361]
Length = 460
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 83/264 (31%), Gaps = 45/264 (17%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K II G+S + + +P +SV LI PPY + V +E
Sbjct: 4 KHTIIYGDSRN-MSLIPNESVQLIVTSPPYWQLKDY-----------GVDKQIGFDDLYE 51
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------------------IFR 113
Y C R L+P L +
Sbjct: 52 DYINNLNLVWKECFRTLEPGCRLCINIGDQFARSAYYGRYKVIPIHSEIIRFCEEIGFDY 111
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+G+++ + P RG + E ++ + K+ +
Sbjct: 112 MGSIIWQKPTSMHTTGGDTVMGSFPYPRGGIVKIDFELILLFKKTGKSASVSKEIKEASK 171
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ G+++ + H PE L R++ + GD ILDPF G
Sbjct: 172 LTRQEWNEYFFSHWNFGGAKQDK-------HIAVFPEELPKRLIRMFSFVGDTILDPFMG 224
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDY 257
SGT+ AK R+ IG E+ Q +
Sbjct: 225 SGTTALAAKNQNRNSIGYEINQKF 248
>gi|116486891|emb|CAH64689.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
Length = 409
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/272 (20%), Positives = 101/272 (37%), Gaps = 36/272 (13%)
Query: 21 DKIIKGN-SI-SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+ + + + D+ DPPYN+ R D +++ D +K
Sbjct: 168 HRIYCGDSCLVESFKAVLDDKMADITVCDPPYNVAYGDSQEREDKKILN--DDQGEK--- 222
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
Y+ F K G +++ S + + + + I+W K++
Sbjct: 223 ---YELFLYDICSHVLAYTK--GAIYICASSSELATLQKVFEEAGGRWSTFIIWAKNHFT 277
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+Q +ET+++ + + + + D
Sbjct: 278 LG--RSDYQRQYETILYGWKNGNKREWHGGRNQSDLWFYDKPTY---------------- 319
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ +
Sbjct: 320 ---NSLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPTF 376
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
+D+ KR G + TGK
Sbjct: 377 VDVTIKR--WQVYTGREAILSNTGKTFAQIQE 406
>gi|302873673|ref|YP_003842306.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
cellulovorans 743B]
gi|307686603|ref|ZP_07629049.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
cellulovorans 743B]
gi|302576530|gb|ADL50542.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
743B]
Length = 417
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/269 (18%), Positives = 95/269 (35%), Gaps = 32/269 (11%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S V + + K +L DPPYN+ + D + D
Sbjct: 168 KHRLICGDSTKLSDVEKLMNGKKANLCVTDPPYNVNYSAGKENERVIKNDHMGD------ 221
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F A VL ++ + ++ F + N +W K +
Sbjct: 222 --SKFYDFLLAAYKNAIVVLDDGAGAYIFHADTEGLNFRKAFKDAGFHLANVCIWVKQSL 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +Q HE +++ + + N D +S
Sbjct: 280 VLG--RSDYQWQHEPVLYGWKPTGKHRWYSDRKQTTVWNFDRPTKSPD------------ 325
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP L++ + +S+ II +PF GSG++ ++ RS +E+ +
Sbjct: 326 -------HPTMKPVPLMAYPIQNSSMTNCIIYEPFAGSGSTLIACEQTGRSCYAVELDEK 378
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTE 285
Y D+ +R + + G++ +
Sbjct: 379 YCDVIVRRYIETAGNDSEVFLLRDGEKIK 407
>gi|42520154|ref|NP_966069.1| prophage LambdaW1, DNA methylase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42409891|gb|AAS14003.1| prophage LambdaW1, DNA methylase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|116486887|emb|CAH64687.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
gi|116486889|emb|CAH64688.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
Length = 409
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/272 (20%), Positives = 101/272 (37%), Gaps = 36/272 (13%)
Query: 21 DKIIKGN-SI-SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+ + + + D+ DPPYN+ R D +++ D+
Sbjct: 168 HRIYCGDSCLVESFKAVLDDKMADITVCDPPYNVAYGDSQEREDKKILND-----DQG-- 220
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + + + I+W K++
Sbjct: 221 -EKYELFLYDICSHVLAYTK--GAIYICASSSELATLQKVFEEAGGRWSTFIIWAKNHFT 277
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+Q +ET+++ + + + + D
Sbjct: 278 LG--RSDYQRQYETILYGWKNGNKREWHGGRNQSDLWFYDKPTY---------------- 319
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ +
Sbjct: 320 ---NSLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPTF 376
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
+D+ KR G + TGK
Sbjct: 377 VDVTIKR--WQVYTGREAILSNTGKTFAQIQE 406
>gi|149907979|ref|ZP_01896647.1| haemagglutinin associated protein [Moritella sp. PE36]
gi|149808985|gb|EDM68916.1| haemagglutinin associated protein [Moritella sp. PE36]
Length = 222
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 37/249 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
K+ K +++ L+ LP +SVDL+ DPPY + G R +S ++ W
Sbjct: 2 KLHKIDAVDWLKSLPNESVDLVITDPPYESLEKHRKIGTTTRLKNSA--GSSNQWFSIFP 59
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ A + RVLK N ++ +F I + + L F IVW K
Sbjct: 60 NSDF----PALVEQIYRVLKKNSHFYLFCDQETMFVIKPIAEELGFKFWKPIVWDKCAIG 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y Y+ + + + D +P +R+
Sbjct: 116 MGY----------------------HYRARYEFILFFEKGKRKLQDLGMPDVLQEKRVW- 152
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PT+KP L+ +++ S+ GD+++DPFFGSG + A L R G ++ Q
Sbjct: 153 ----RGYPTEKPVPLIEKLISQSSSVGDLVIDPFFGSGATLIAAANLGRQSEGADIAQSA 208
Query: 258 IDIATKRIA 266
+ RI
Sbjct: 209 HEFVNNRIK 217
>gi|217033446|ref|ZP_03438876.1| hypothetical protein HP9810_1g60 [Helicobacter pylori 98-10]
gi|216944151|gb|EEC23579.1| hypothetical protein HP9810_1g60 [Helicobacter pylori 98-10]
gi|261837709|gb|ACX97475.1| cytosine methyltransferase [Helicobacter pylori 51]
gi|261839119|gb|ACX98884.1| DNA modification methylase [Helicobacter pylori 52]
Length = 252
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + + + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|224538891|ref|ZP_03679430.1| hypothetical protein BACCELL_03787 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519498|gb|EEF88603.1| hypothetical protein BACCELL_03787 [Bacteroides cellulosilyticus
DSM 14838]
Length = 288
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 93/264 (35%), Gaps = 40/264 (15%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ I + +P V+ I PPYNL Y D +F ++
Sbjct: 26 DCIETMNNMPQGVVNTIVTSPPYNLSKKYGKY--------------DDSRTFAEWEELID 71
Query: 87 AWLLACRRVLKPNGTLWVIGS------YHNIFRIGTMLQNLNFWI---LNDIVWRKSNPM 137
A VL PNG+ + S I + + + L + + N M
Sbjct: 72 KVAEAAYNVLVPNGSFLLNVSPVPDKKTKEIVPLDAIAYFVFKKHGYALRNSIVWHFNNM 131
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------------DVQMRSDW 184
N R E+++W + + + + + D+
Sbjct: 132 QNCTNRL-SGRWESILWFVKDIDSYQFNLDDIRVPYITKNDKRLTGVGRNPTDIWNFDIP 190
Query: 185 LIPICSG---SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ +NK G HP P ++ RI+ +T G++++DPF GSGT+ A
Sbjct: 191 ESDFWYFDRVNNMTKNKLGLTEHPCIFPTPMIERIIKMTTHKGEVVMDPFLGSGTTLVAA 250
Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
+ L R +G E+ + + I KR+
Sbjct: 251 QNLGRIGLGCELDEKFAPIIEKRV 274
>gi|295114924|emb|CBL35771.1| DNA modification methylase [butyrate-producing bacterium SM4/1]
Length = 411
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/268 (19%), Positives = 102/268 (38%), Gaps = 39/268 (14%)
Query: 20 KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+ +++ G+S VL + K +L+ DPPYN+ G + + + A
Sbjct: 167 RHRLVCGDSTKAETYEVL--MQGKKANLVVTDPPYNVNYEGTAGKIKNDNMAA------- 217
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
E + F +V+ + +++V + + F++ +W+K
Sbjct: 218 ----EKFYQFLLDAFTNMEKVMAEDASIYVFHADTEGLNFRRAFTDAGFYLSGCCIWKKP 273
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + ++Q+ L + K + Y+ I +
Sbjct: 274 SLVLGRSPYQWQHE-PVLYGWKKNGKHQWYSDRKQT----------------TIWEFEKP 316
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+N D HPT KP LL+ + +S+ +ILDPF GSG++ ++ RS IE+
Sbjct: 317 RKNAD----HPTMKPIPLLAYPITNSSMSNTLILDPFGGSGSTLIACEQTDRSCCTIELD 372
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGK 282
+ Y D+ KR ++ GK
Sbjct: 373 EKYCDVIIKRYVELKGSAEDVSVERDGK 400
>gi|85715779|ref|ZP_01046758.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85697432|gb|EAQ35311.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
Length = 426
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 16/249 (6%)
Query: 20 KDKIIKGNSISV--LEK-LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ ++ G+S L++ + K VD F DPPYN+++ G A+
Sbjct: 174 EHRVGCGDSRDAEFLQRVIGDKKRVDAAFLDPPYNVRIGGHAVAAGSHREFAMAS---GE 230
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + +F L A V + +V + ++ + + + LN VW KSN
Sbjct: 231 MNEAEFRSFLADTLGAAASVSRDGAVHFVCMDWRHMDSVSAVGATVYGACLNLCVWNKSN 290
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
G +++ HE + + + + R++ S R
Sbjct: 291 AGM---GSLYRSKHELVFVYRVGMAPHL------NMVELGKHGRNRTNVWDYASVNSMRG 341
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ LHPT KP L++ L T+ GD++LD F GSGT+ A++ R F G+++
Sbjct: 342 SRREDLALHPTVKPTGLVADALKDVTRHGDLVLDLFLGSGTTLIAAERTGRCFRGLDIDP 401
Query: 256 DYIDIATKR 264
Y+D+A +R
Sbjct: 402 AYVDVAIER 410
>gi|152981982|ref|YP_001354447.1| DNA modification methylase [Janthinobacterium sp. Marseille]
gi|151282059|gb|ABR90469.1| DNA modification methylase [Janthinobacterium sp. Marseille]
Length = 411
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/249 (21%), Positives = 90/249 (36%), Gaps = 34/249 (13%)
Query: 21 DKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWDKF 75
+++ G+S + D++F DPPYN+ A+ + D F
Sbjct: 171 HRLLCGDSTVAKSYTRLMQGDLADMVFTDPPYNVNYANSAKDKMRGKDRAILNDNLGDGF 230
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F A + CR G ++V S + + + I+W K+
Sbjct: 231 YDFL--LAALTPTVTHCR------GGIYVAMSSSELDVLQAAFRAAGGKWSTFIIWAKNT 282
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ Y + A + D W +
Sbjct: 283 FTLGRA------------DYQRQYEPILYGWPEGAQRHWCGDRDQGDVWA---------I 321
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ LHPT KP L+ R + +S++PG+++LDPF GSGT+ A+K R IE+
Sbjct: 322 KKPQKNDLHPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDP 381
Query: 256 DYIDIATKR 264
Y+D+ +R
Sbjct: 382 KYVDVIVRR 390
>gi|121607621|ref|YP_995428.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552261|gb|ABM56410.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 274
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/277 (20%), Positives = 93/277 (33%), Gaps = 49/277 (17%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+S L +L SVDLI PPY Q + Y
Sbjct: 7 IYLGDSKDQLARLAVDSVDLIVTSPPYADQRKDTYG----------------GIHHDKYV 50
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYH--------NIFRIGTMLQNLNFWILNDIVWRKS 134
+ RVLKP GT + + + ++ + + +W K
Sbjct: 51 EWFLPISGQLLRVLKPTGTFILNIKEKVVDGERSTYVMELIIAMRKQGWLWTEEFIWHKK 110
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGY-----------------------TFNYDAL 171
N P RF+++ E L+ + + Y +
Sbjct: 111 NSYPGKWPNRFRDSWERLLQFNKNRHFNMYQEEVMVPMGDWAKARLKKLSDTDKIRDTSK 170
Query: 172 KAANEDVQMRSDWLIPICSGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ + + + L + K H PE L + TK D +LD
Sbjct: 171 VGSGFGKNISNWIDRGKAYPTNVLHLATECNNKNHSAAFPEELPEWFIKLFTKRLDTVLD 230
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
PF GSGT+ VA K++R IGI++ +Y D+ +++
Sbjct: 231 PFMGSGTTLMVANKMQRHSIGIDIVPEYCDMVKQQLR 267
>gi|313888413|ref|ZP_07822081.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845610|gb|EFR33003.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 321
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 99/320 (30%), Gaps = 84/320 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II ++IS L++ P K+ D PPY + + + S E
Sbjct: 10 NYIINLDAISALKEFPDKTFDCCITSPPYYGLRDYKA-----------EGQIGREESPEE 58
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
Y +RVLK GTLW++
Sbjct: 59 YLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNTEGRSGQKESITEKLS 118
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ L+ +++ +DI+W K N MP R ++E + S + K
Sbjct: 119 GYKAKDLMGIPWQLALKLREEGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSKARK 178
Query: 161 AKGYTFNYDALKAANEDVQMR---------------------------------SDWLIP 187
+ +
Sbjct: 179 YFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDNVPKFR 238
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + H P L+ + + +ILDPF GSGT G VA ++ R
Sbjct: 239 NNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIRMDRE 298
Query: 248 FIGIEMKQDYIDIATKRIAS 267
+IGI++ +DY IA +RI
Sbjct: 299 YIGIDINKDYCQIAKERIEK 318
>gi|325662079|ref|ZP_08150698.1| hypothetical protein HMPREF0490_01436 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471742|gb|EGC74961.1| hypothetical protein HMPREF0490_01436 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 420
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/267 (18%), Positives = 95/267 (35%), Gaps = 32/267 (11%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ V + K +LI DPPYN+ D ++ DK
Sbjct: 171 RHRLMCGDATSAEDVAALMDGKKANLIVTDPPYNVAFESS---------DGLSIKNDKME 221
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + Y F A L+ G +V + + F + +W K++
Sbjct: 222 NSKFY-EFLLAAFKNMADNLEKGGAAYVFHADTEGLNFRKAFIDAGFHLSGCCIWVKNSL 280
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ P G+ N + N + W
Sbjct: 281 VLGRSDYQWQH----------EPVLYGFLQNGKHYWSKNAGRSQTTIWNFDKP------- 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL+ + +S++ I++D F GSG++ ++ R +EM +
Sbjct: 324 --KKNKNHPTSKPLDLLAYPIGNSSQENAIVIDTFGGSGSTLMTCEQTNRICHTMEMDEK 381
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
Y + +R + GK+
Sbjct: 382 YASVILRRYVEDTGDAENVFVIRDGKK 408
>gi|315586257|gb|ADU40638.1| adenine specific DNA methyltransferase [Helicobacter pylori 35A]
Length = 422
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 182 LYHGDA-SVLETFEKGFYDLCITSPPYNLSIEY----------QGSND----FIAYDDYL 226
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + + + + + N I+W +S
Sbjct: 227 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 286
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 287 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 346
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 347 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 399
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 400 GLEIEKEYCELSKKRI 415
>gi|229520810|ref|ZP_04410232.1| hemagglutinin associated protein [Vibrio cholerae TM 11079-80]
gi|229342043|gb|EEO07039.1| hemagglutinin associated protein [Vibrio cholerae TM 11079-80]
Length = 236
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 103/247 (41%), Gaps = 37/247 (14%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++I+ L + + SVDL+ DPPY + G R +S ++ W + E ++
Sbjct: 20 DAITWLRTIESNSVDLVITDPPYESLEKHRKIGTTTRLKNSKSS--SNQWFEIFPNERFE 77
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ R++K N ++ +F I + +++ F IVW K + +
Sbjct: 78 EL----VSEIYRIMKKNSHFYLFCDQETMFVIKPIAESMGFKFWKPIVWDKVSIGMGY-- 131
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
Y Y+ + + + ++ IP +R+ K
Sbjct: 132 --------------------HYRARYEFILFFEKGKRKLNNLSIPDILVEKRVW-----K 166
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+PT+KP L ++ S+ D+++DPF GSG G ++ L R+F G ++ + + +
Sbjct: 167 GYPTEKPVNLAKTLIEQSSNEQDVVIDPFCGSGFVGQASELLNRNFRGNDLNIEAVKLTK 226
Query: 263 KRIASVQ 269
RI S++
Sbjct: 227 TRINSIR 233
>gi|2996358|gb|AAC13238.1| adenine DNA methyltransferase homolog [Yersinia pestis KIM 10]
Length = 213
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 41/242 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ P +VD I DPPY + D + + + D + +
Sbjct: 1 MSGFPDNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKTDEWLQPACHE 45
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RVLK + + ++ + R +N F ++ +V+ K+ + HE
Sbjct: 46 MYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSKAAYVGYRHEC 102
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ N+ + G + HPT+KP
Sbjct: 103 AYILAKGRPPLP-------QNPLNDVIAW----------------KYSGNRHHPTEKPVT 139
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L ++ S T PG I+LDPF GSG++ A + R +IGIE+ + Y +R+A+V+
Sbjct: 140 SLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRAGQQRLAAVRRA 199
Query: 272 GN 273
Sbjct: 200 MQ 201
>gi|317013708|gb|ADU81144.1| putative adenine-specific DNA-methyltransferase [Helicobacter
pylori Gambia94/24]
Length = 252
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 21/249 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ + WL C K L + L + + W+ N +
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNES 116
Query: 143 RRFQNAHETLIW-----ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + +P F + K + M + + +G
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRKKQTSTMSKEEFLLYTNGLWNFSG 176
Query: 198 KDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ ++L HP P L R + + D I DPF GSGT+ A L R +G+E++++
Sbjct: 177 ESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKE 236
Query: 257 YIDIATKRI 265
Y +++ KRI
Sbjct: 237 YCELSKKRI 245
>gi|303233583|ref|ZP_07320241.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
gi|302495327|gb|EFL55075.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
Length = 321
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 99/320 (30%), Gaps = 84/320 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II ++IS L++ P K+ D PPY + + + S E
Sbjct: 10 NYIINLDAISALKEFPDKTFDCCITSPPYYGLRDYKA-----------EGQIGREESPEE 58
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------------ 110
Y +RVLK GTLW++
Sbjct: 59 YLNKLIEVFREVKRVLKKEGTLWIVIGDSYAGTRSKKEYKDPKNTEGRSGQKESITEKLS 118
Query: 111 ----------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ L+ +++ +DI+W K N MP R ++E + S + K
Sbjct: 119 GYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSKARK 178
Query: 161 AKGYTFNYDALKAANEDVQMR---------------------------------SDWLIP 187
+ +
Sbjct: 179 YFYNFDAMKEPIKEISKKRYMRARGKNNKYLQEGTGAKRQSINEAREYGEYIGDNVPKFR 238
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + H P L+ + + +ILDPF GSGT G VA ++ R
Sbjct: 239 NNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMVAIRMDRE 298
Query: 248 FIGIEMKQDYIDIATKRIAS 267
+IGI++ +DY IA +RI
Sbjct: 299 YIGIDINKDYCQIAKERIEK 318
>gi|313652048|ref|YP_004046726.1| DNA methylase N-4/N-6 domain protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940799|gb|ADR19990.1| DNA methylase N-4/N-6 domain protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 288
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/251 (18%), Positives = 87/251 (34%), Gaps = 23/251 (9%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++KG+ ++ DLI PPYN+ + ++ + S+E Y
Sbjct: 45 LLKGDVLNN-NYFENDIFDLIVTSPPYNVDIKYNTHKDN--------------ISYEEYL 89
Query: 83 AFTRAWLLACRRVLKPNGTLWVI-------GSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F+ AWL C + K L + G ++ T+L W + +
Sbjct: 90 QFSEAWLSNCYKWSKKQARLCLNIPLDKNKGGQRSVGADLTILAQKVGWKYHSTIIWNEG 149
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + +P + D + +G
Sbjct: 150 NISRRTAWGSWLSASAPYVIAPVELIVILYKEEWKKTQGTRISDISKDEFMQWTNGLWTF 209
Query: 196 RNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ +++ HP P L R + + DI+ DPF GSGT+ A R IG+E+
Sbjct: 210 NGESKKRIGHPAPFPLELPYRCIKLFSFVQDIVFDPFAGSGTTLIAANNTNRYSIGLEID 269
Query: 255 QDYIDIATKRI 265
Y +++ +R+
Sbjct: 270 SSYCELSKQRV 280
>gi|58696775|ref|ZP_00372310.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
gi|225630341|ref|YP_002727132.1| DNA methylase [Wolbachia sp. wRi]
gi|225630735|ref|YP_002727526.1| DNA methylase [Wolbachia sp. wRi]
gi|58537028|gb|EAL60168.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
gi|116486897|emb|CAH64692.1| DNA methylase [Wolbachia endosymbiont of Drosophila teissieri]
gi|116486899|emb|CAH64693.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
gi|225592322|gb|ACN95341.1| DNA methylase [Wolbachia sp. wRi]
gi|225592716|gb|ACN95735.1| DNA methylase [Wolbachia sp. wRi]
Length = 408
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/272 (19%), Positives = 92/272 (33%), Gaps = 36/272 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + + D+ DPPYN+ R D +++
Sbjct: 166 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 218
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 219 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 275
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W
Sbjct: 276 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPI------- 316
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ + +V+S++PGD +LDPF GSG++ ++ R IE+ +
Sbjct: 317 --HNSLHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKF 374
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
+D+A KR G + TGK
Sbjct: 375 VDVAIKR--WQVYTGREAILSGTGKTFAQIQE 404
>gi|125974233|ref|YP_001038143.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
gi|125714458|gb|ABN52950.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
Length = 411
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/269 (17%), Positives = 94/269 (34%), Gaps = 35/269 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I G+S E L +L+ DPPYN+ + + + +
Sbjct: 165 RHRLICGDSTKAETYEALMDGKKANLVVTDPPYNVAYEAKAGKIQNDNLKD--------- 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E + F ++ + +++V + + + F++ +W K +
Sbjct: 216 --EEFYNFLYKAFTNMYDAMEKDASIYVFHADTEGLNFRKAFKAVGFYLSGVCIWAKQSL 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + + + D
Sbjct: 274 VLGRSPYQW--KHEPVLFGWKKEGRHNWYSDRKQSTIWSFDRP----------------- 314
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
LHPT KP AL + + +S+ I+LDPF GSG++ ++ R IE+ +
Sbjct: 315 --SKNALHPTMKPVALCAYPIQNSSMSNCIVLDPFGGSGSTLIACEQTNRICYTIELDEK 372
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTE 285
Y D+ KR V G + +
Sbjct: 373 YADVIVKRYIEQVGTDEEVFLVRDGVKIK 401
>gi|317010544|gb|ADU84291.1| type II DNA modification enzyme [Helicobacter pylori SouthAfrica7]
Length = 252
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 93/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIPIC 189
N + A A Y Y + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIIVFYKNEYKRKKQTSTMSREEFLLYTNGLWNFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|172058382|ref|YP_001814842.1| DNA methylase N-4/N-6 domain-containing protein [Exiguobacterium
sibiricum 255-15]
gi|171990903|gb|ACB61825.1| DNA methylase N-4/N-6 domain protein [Exiguobacterium sibiricum
255-15]
Length = 492
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/281 (20%), Positives = 109/281 (38%), Gaps = 41/281 (14%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLV 65
+N +N + ++ I G+S+ L++ K+ VDLI PPY D
Sbjct: 2 LNSVENLNMQDLNQYINGSSL-FLKEYFEKTIPFVDLIVTSPPYW----------DMKDY 50
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTM 117
V + + AY + + K + +++VI I
Sbjct: 51 GEVKEQTGFGQEYAAYLKDIKKIFEGVYHIAKDSASMFVIVDTMKRDGRMIRLPDDISRE 110
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-- 175
L+ + + + I+W K +P R + +N E ++ + K+ Y + D +K +
Sbjct: 111 LETVGWVHQDTIIWDKGKTLPWSRKGQMRNVFEYVLMFTKG-KSTSYKYYIDRIKTTDKL 169
Query: 176 -------------EDVQMRSDW-LIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVS 219
+ + W GS + GE+ H P +++R+++
Sbjct: 170 KEWWIDYPERYGPQGKVPDNIWEFYIPTQGSWGSKKDFGEEEFRHACPFPPEMMARLILL 229
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+T D++ DPF G+G A A+K+ R F+G + DY +
Sbjct: 230 ATDENDVVFDPFAGTGVLLATAEKMNRRFLGFDTNPDYKKV 270
>gi|328541919|ref|YP_004302028.1| DNA methylase N-4/N-6 domain protein [polymorphum gilvum
SL003B-26A1]
gi|326411670|gb|ADZ68733.1| DNA methylase N-4/N-6 domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 252
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/269 (23%), Positives = 96/269 (35%), Gaps = 46/269 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ ++ D+I ADPPY + A+
Sbjct: 7 TVLAGDCRDLMPA--HGPFDMILADPPY-------------------------GDTSLAW 39
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D WL R LKP G+LWV GS + + + + + F
Sbjct: 40 DRRVEGWLPLARAALKPTGSLWVFGSLRCFM-VTAIRFADAGLRIAQEIVWEKQNGSGFH 98
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW------LIPICS 190
RF+ HE + P+ +N DAL +
Sbjct: 99 ADRFKRVHELAVQFYPAETPWRDVYNDVQTTPDALARTVRRKKRPPHTGRIDAGHYVSQD 158
Query: 191 GSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
G RL RN G +HPT+KP ALL ++ +S G ++ D F GSG +G +
Sbjct: 159 GGPRLMRSVIYVRNAHGRAIHPTEKPSALLEILIRTSCPEGGLVGDWFAGSGAAGEACRL 218
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLG 272
R ++G E+ + A RIA+V P
Sbjct: 219 SGRRYLGCEIDAAMAERANARIAAVLPFD 247
>gi|167630967|ref|YP_001681466.1| DNA methylase [Heliobacterium modesticaldum Ice1]
gi|167593707|gb|ABZ85455.1| DNA methylase [Heliobacterium modesticaldum Ice1]
Length = 410
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/266 (16%), Positives = 94/266 (35%), Gaps = 35/266 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S L +L+ DPPYN+ G+ + + D +
Sbjct: 167 RHRLVCGDSTKPETFSLLMDGKLANLVVTDPPYNVNYEGKAGKIKN----------DNMA 216
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F + + ++++ + + F++ +W+K +
Sbjct: 217 DDKFY-RFLLDAFTLTEKAMAKEASIYIFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + + D
Sbjct: 276 VLGRSPYQW--QHEPILFGWKKAGKHAWYSDRKQSTVWEFDKP----------------- 316
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP L++ +++S+ G I+LDPF GSG++ ++ R +E+ +
Sbjct: 317 --KKNADHPTMKPVPLIAYPILNSSMTGCIVLDPFGGSGSTLIACEQTDRICHTVELDEK 374
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
+ D+ KR N+ L K
Sbjct: 375 FCDVIVKRYIEQAGTDNVILIRGGAK 400
>gi|108562690|ref|YP_627006.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
gi|107836463|gb|ABF84332.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
Length = 252
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 23/250 (9%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRI----GTMLQNLNFWILNDIVWRKSNP 136
+ + WL C K L V + + + +
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNES 116
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ R ++ + +P F + K + M + + +G
Sbjct: 117 NISRRTAWGSWLQASVP-YAIAPVELIVVFYKNEYKRKKQTSTMSREEFLLYTNGLWNFS 175
Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ ++L HP P L R + + D I DPF GSGT+ A L R +G+E+++
Sbjct: 176 GESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEK 235
Query: 256 DYIDIATKRI 265
+Y +++ KRI
Sbjct: 236 EYCELSKKRI 245
>gi|299541742|ref|ZP_07052070.1| Phage protein, DNA methylase [Lysinibacillus fusiformis ZC1]
gi|298725737|gb|EFI66373.1| Phage protein, DNA methylase [Lysinibacillus fusiformis ZC1]
Length = 232
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 92/256 (35%), Gaps = 45/256 (17%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ I + + ++ +P KSVDLI D PY T WD FE
Sbjct: 5 KNTIYNMDCLEGMQYIPDKSVDLILTDLPYGT----------------TTCRWDTIIPFE 48
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
RV+K NG + + S ++ L + + + PN
Sbjct: 49 -------LLWEQYERVIKDNGAIVLTASQPFTSKLIMSNLKLFRYEWIWKKGKHTTGFPN 101
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN-- 197
+N ++ P T+N + + S + + +E L
Sbjct: 102 ANKMPLKNHENVCVFYKKLP-----TYNPQGVIYCKPVLIKNSPKMKILGDRNETLSKPH 156
Query: 198 ---------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+D + HPTQKP +L ++++ T PGD +LD G+ T+
Sbjct: 157 IVKRKNYPKSVIDFPRDSKTWHPTQKPLSLFEYLILTYTNPGDTVLDNCMGAFTTAVACD 216
Query: 243 KLRRSFIGIEMKQDYI 258
+RS+IG E+ +Y
Sbjct: 217 NTKRSWIGFELDSEYC 232
>gi|293401144|ref|ZP_06645288.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305270|gb|EFE46515.1| DNA (cytosine-5-)-methyltransferase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 415
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 96/257 (37%), Gaps = 37/257 (14%)
Query: 21 DKIIKGNSISV----LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ G+S + + K +L+ DPPYN+ G + +
Sbjct: 167 HRLFCGDSTKAQSYEM-LMAGKKANLVVTDPPYNVNYEGTAGKIQNDN-----------M 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+++ F ++ + + +++V + + F++ +W+K +
Sbjct: 215 DNDSFYQFLFDAFTNMKQAMAEDASIYVFHADTEGLNFRKAFADAGFYLSGCCIWKKPSL 274
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L S K + Y+ + E + +D
Sbjct: 275 VLGRSPYQWQHE-PCLFGWKKSGKHQWYSGRKETTIWEFEKPKKNAD------------- 320
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP AL++ +++S+ I+LDPF GSG++ ++ R IE+ +
Sbjct: 321 -------HPTMKPIALIAYPIMNSSMSNCIVLDPFGGSGSTLIACEQTGRICHTIELDEK 373
Query: 257 YIDIATKRIASVQPLGN 273
Y D+ KR +
Sbjct: 374 YADVIVKRYIEQVGTSD 390
>gi|315453087|ref|YP_004073357.1| adenine specific DNA methyltransferase [Helicobacter felis ATCC
49179]
gi|315132139|emb|CBY82767.1| adenine specific DNA methyltransferase [Helicobacter felis ATCC
49179]
Length = 255
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/251 (21%), Positives = 92/251 (36%), Gaps = 22/251 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + ++++ LP + +D I PPYN+ + + S++ Y
Sbjct: 13 RLYQASALNS-ALLPQECLDCIITSPPYNVGIAYNASQDAQ--------------SYQEY 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
F+ WL + K +G L + I N ++ +L S+ + N
Sbjct: 58 LDFSACWLENVYQWTKTSGRLCLNIPLDKNKGGAQSVGADLITLAKKVGWSYHSSIVWNE 117
Query: 141 RGRRFQNAHETLIWASPSPKAKGY----TFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ A + + AS K + V S +
Sbjct: 118 GNISRRTAWGSWLSASAPYVIAPVELIVILYKQVWKKPFKGVSDISKEEFMAWTNGLWSF 177
Query: 197 NKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
N + +K HP P L R + + GD I DPF GSGT+ A +R+FIGIE+
Sbjct: 178 NGESKKRIGHPAPFPRELPRRCIKLFSFVGDTICDPFSGSGTTMIEAHLNQRAFIGIELD 237
Query: 255 QDYIDIATKRI 265
Y ++ +R
Sbjct: 238 PTYCALSYERF 248
>gi|332673104|gb|AEE69921.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
Length = 252
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 94/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + + + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|85714766|ref|ZP_01045753.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85698651|gb|EAQ36521.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
Length = 451
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 16/249 (6%)
Query: 20 KDKIIKGNSISV--LEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ ++ G+S L+++ K VD F DPPYN+++ G A+
Sbjct: 199 EHRVGCGDSRDAEFLQRVIGDRKRVDAAFLDPPYNVRIGGHAVSAGSHREFAMAS---GE 255
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + +F L A V + +V + ++ + + + LN VW KSN
Sbjct: 256 MNEAEFRSFLADTLGAAASVSRDGAVHFVCMDWRHMDSVSAVGATVYGACLNLCVWNKSN 315
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
G +++ HE + + + + R++ S R
Sbjct: 316 AGM---GSLYRSKHELVFVYRVGMAPHL------NMVELGKYGRNRTNVWDYASVNSMRG 366
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ LHPT KP L++ L T+ GD++LD F GSGT+ A++ R F G+++
Sbjct: 367 SRREDLTLHPTVKPTGLVADALKDVTRHGDLVLDLFLGSGTTLIAAERTGRCFRGLDIDP 426
Query: 256 DYIDIATKR 264
Y+D+A +R
Sbjct: 427 AYVDVAIER 435
>gi|317012105|gb|ADU82713.1| putative adenine-specific DNA-methyltransferase [Helicobacter
pylori Lithuania75]
Length = 252
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 27/252 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N + A A Y Y + M + + +G
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYK---RKKQTSTMSKEEFLLYTNGLWN 173
Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ + L HP P L R + + D I DPF GSGT+ A L R +G+E+
Sbjct: 174 FSGESKKHLKHPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEI 233
Query: 254 KQDYIDIATKRI 265
+++Y +++ KRI
Sbjct: 234 EKEYCELSKKRI 245
>gi|163850239|ref|YP_001638282.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
extorquens PA1]
gi|163661844|gb|ABY29211.1| DNA methylase N-4/N-6 domain protein [Methylobacterium extorquens
PA1]
Length = 488
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 12/241 (4%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
++ ++ ++L L +SV ++F+DPPYN+ ++G + + + S + A
Sbjct: 202 LEADNYAML--LQGESVRMVFSDPPYNVPVSGHVCGLGKVQHREFAMASGEM-SEAEFVA 258
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
F + R P G +++ + ++F + T + + LN VW K+N G
Sbjct: 259 FLVQAMAHLRERQVPGGLMYLAMDHRHVFELSTAARQIGLEQLNICVWNKTNAGM---GS 315
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+++ HE + A T + W + R R
Sbjct: 316 FYRSKHELIFVLRKPGAAHLNTVELGRH-----GRYRTNVWDYAGVNTFGRHR-MQELSS 369
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP AL+ + T+ G+ +LD F GSGT+ A++ R GIE+ Y+D+A +
Sbjct: 370 HPTVKPVALVVDAIKDCTRRGERVLDAFCGSGTTLIAAERAGRVGYGIELDPVYVDVAVR 429
Query: 264 R 264
R
Sbjct: 430 R 430
>gi|269119459|ref|YP_003307636.1| DNA methylase N-4/N-6 domain protein [Sebaldella termitidis ATCC
33386]
gi|268613337|gb|ACZ07705.1| DNA methylase N-4/N-6 domain protein [Sebaldella termitidis ATCC
33386]
Length = 302
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 64/299 (21%), Positives = 100/299 (33%), Gaps = 64/299 (21%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ GN++S+++K+ S+ I PPY + + E Y
Sbjct: 2 KLYHGNAVSLIDKIKDNSIQSIITSPPYFCLRDYE-----------YPQQIGLEDQVEDY 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSY---------------------------HNIFR- 113
+ LK +G L++ HN +R
Sbjct: 51 LTKLIQIWNTAKNKLKDDGLLFINIDDTYYYPRPGETKIWGMNANGDKRPGIKKHNEYRK 110
Query: 114 ---------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ + + I+W+K N MP RF +E + S S K
Sbjct: 111 SSLMAVPQKLIIKMIESGWIFRQQIIWQKPNCMPESTTSRFTRDYEAIFMFSKSENYKFN 170
Query: 165 TFNYD------ALKAANEDVQMRSDWLIPICSGSERLRNK----------DGEKLHPTQK 208
D + + +S +E RN H
Sbjct: 171 QLKEDMKTEDLSNPRGSNGTTKQSGRRNEENKKTEYTRNMRSVWSINNVCSSNNNHYATF 230
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P L R+++ ST D +LDPF GSGT+ VAK+L R IGIE+ Y+++A K I
Sbjct: 231 PAELARRLILCSTDEKDTVLDPFSGSGTTLKVAKQLNRHGIGIEINSKYVELAEKNIND 289
>gi|66046061|ref|YP_235902.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae B728a]
gi|63256768|gb|AAY37864.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae B728a]
Length = 373
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 99/360 (27%), Gaps = 124/360 (34%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I+ G+ I ++ LP +SV PPY + V +
Sbjct: 4 LHQILVGDCIDMMRTLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPA 52
Query: 80 AYDAFTRAWLLACRRVL----------------------KPNGTLWVIG----SYHNI-- 111
+ A RRVL +P G + G S I
Sbjct: 53 EFIARLVDVFREVRRVLRADGTIWVNMGDSYAGSWGSQGRPQGDGQMSGRSVTSARQINE 112
Query: 112 --------------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
+R+ LQN +++ DI+W K NPMP R
Sbjct: 113 HPSFKSGTGVRGREMSMKPKDLMGMPWRLAFALQNDGWYLRQDIIWNKPNPMPESVRDRC 172
Query: 146 QNAHETLIWASPSPKAK-----------------------------------GYTFNYDA 170
+HE + S S K N A
Sbjct: 173 TKSHEYIFLLSKSKKYYFDQTAILEPCSPNTHARLSQDVQAQIGSERANGGAKSNGNMKA 232
Query: 171 LKAANED-----------------VQMRSDWLIPICSGSERLR-------NKDGEKLHPT 206
+ S +ER + + H
Sbjct: 233 TTRKSNGVGWGHGTDADDRQRGRVKDNESMNSALAIMPTERNKRSVWTVATHSFKGAHFA 292
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
P L+ +++ G ++LDPF G+GT+ V+ + R + E+ +Y +A RI
Sbjct: 293 TFPPDLIRPCILAGAPRGGVVLDPFGGAGTTSLVSMQEGRRSVICELNPEYAALARARID 352
>gi|207725435|ref|YP_002255831.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
gi|206590671|emb|CAQ37633.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
Length = 422
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/254 (20%), Positives = 87/254 (34%), Gaps = 34/254 (13%)
Query: 20 KDKIIKGN-----SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+ +++ G+ S L + D++F DPPYN+ A+ +
Sbjct: 170 EHRLLCGDATVAESYD--RLLQGEPADMVFTDPPYNVNYANTAKDRLRGKSRAILNDNLG 227
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
++ A + CR G +V S + + + I+W K
Sbjct: 228 SGFYDFLLAALTLLVANCR------GAHYVAMSSSELDVLQAAFREAGGHWSTFIIWAKD 281
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ Y + A + D W
Sbjct: 282 RFTMGGA------------DYQRQYEPILYGWTEGARRHWCGDRDQGDVWQ--------- 320
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
++ LHPT KP L+ R + +S++PGD++LD F GSGT+ A+K R IE+
Sbjct: 321 IKKPARNDLHPTMKPLELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELD 380
Query: 255 QDYIDIATKRIASV 268
Y D+ +R
Sbjct: 381 PKYADVIVRRWQDW 394
>gi|209885571|ref|YP_002289428.1| DNA methylase [Oligotropha carboxidovorans OM5]
gi|209873767|gb|ACI93563.1| DNA methylase [Oligotropha carboxidovorans OM5]
Length = 252
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 65/266 (24%), Positives = 95/266 (35%), Gaps = 46/266 (17%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I G+ ++ P DLI ADPPY + A+D
Sbjct: 8 VIVGDCRVLMP--PRGPFDLILADPPY-------------------------GDTSLAWD 40
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
WL LKP+G+LW GS + +IVW K N +F
Sbjct: 41 RRVDGWLRLACDALKPSGSLWGFGSLRCFMATANQFADAGLRYAQEIVWEKQNGT-SFHA 99
Query: 143 RRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQ------MRSDWLIPICSG 191
RF+ HE + + +N DA G
Sbjct: 100 DRFKRVHELVAQFYRADAPWSAVYNDVQTTPDATARTVRRKMRPPHTGHIDVGHYVSEDG 159
Query: 192 SERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
RL RN G +H T+KP L+ ++ +S G ++ D F GSG +G +
Sbjct: 160 GPRLMRSVIYARNCHGTAIHSTEKPSGLIEILIRTSCPQGGLVGDWFAGSGAAGEACRLA 219
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQP 270
R ++G E+ ++A RIASV P
Sbjct: 220 GRRYLGCEIDAGMAELARARIASVLP 245
>gi|110636168|ref|YP_676376.1| DNA methylase N-4/N-6 [Mesorhizobium sp. BNC1]
gi|110287152|gb|ABG65211.1| DNA methylase N-4/N-6 [Chelativorans sp. BNC1]
Length = 276
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 64/268 (23%), Positives = 102/268 (38%), Gaps = 46/268 (17%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G+ ++ D+I ADPPY + +D
Sbjct: 23 LLTGDCRDLMPA--HGPFDMILADPPY-------------------------GDTSLGWD 55
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
WL R L+ +G+LWV GS + + + F L + + +F
Sbjct: 56 RRVSGWLPLARAALRHSGSLWVFGSLRSFMATADLFADAGF-RLAQEIVWEKQNGTSFHS 114
Query: 143 RRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW------LIPICSG 191
RF+ HE ++ P+ +N DA Q G
Sbjct: 115 DRFKRVHEIVVQFYPAETPWRDIYNDVQTTPDATARTVRRKQRPPHTGHIDAGHYVSHDG 174
Query: 192 SERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
R+ RN G +HPT+KP ALL ++ +S PG ++ D F GSG++G +
Sbjct: 175 GPRIMRSVIYVRNTHGRAIHPTEKPSALLEILIRTSCPPGGLVGDWFAGSGSAGEACRLT 234
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLG 272
R+++G E+ + A RIASV PL
Sbjct: 235 GRNYLGCEIDGAMAERARTRIASVLPLC 262
>gi|15612349|ref|NP_224002.1| type II DNA modification (methyltransferase [Helicobacter pylori
J99]
gi|4155888|gb|AAD06858.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 59/321 (18%), Positives = 99/321 (30%), Gaps = 74/321 (23%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ ++ NEN+ + +IK + L L +++D I+ DPP+N +
Sbjct: 234 LEEEVKSLFNENEING-----TLIKSENYQALNSLKNRYKEAIDCIYIDPPFNTGSDFAY 288
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH-NIFRIGT 116
D+F + + L L P G ++ Y N
Sbjct: 289 I--------------DRFQD-STWLSLMHNRLQLAYDFLSPQGNFYLHLDYRANYLGRML 333
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK---------AKGYTFN 167
+ + + + F H++L+W S + + Y
Sbjct: 334 LNDIFSKENFRNEIIWHFRTYQGQIQSNFPRKHDSLLWYSKNCNVNNFFKITYSDNYKDT 393
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP---------------------- 205
D + V R L
Sbjct: 394 VDYRRWREFIVDNNKIVYPNYPKADSRFDGYLKRYLQSTKEPKNGDIIATINGYVIDDVW 453
Query: 206 -------------------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
TQKPE LL RI+ +S+ I+ D F GSGT+ AVA KL+R
Sbjct: 454 TDIQAIDPKKADERLQGTLTQKPEKLLERIIKASSNENSIVCDFFAGSGTTCAVAHKLKR 513
Query: 247 SFIGIEMKQDYIDIATKRIAS 267
+IG+EM + + + R+
Sbjct: 514 KYIGVEMGEHFESVILPRLKK 534
>gi|208434209|ref|YP_002265875.1| typeII DNA modification enzyme [Helicobacter pylori G27]
gi|208432138|gb|ACI27009.1| typeII DNA modification enzyme [Helicobacter pylori G27]
Length = 261
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 21/249 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 21 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEY----------QGSND----FRAYDDYL 65
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ + WL C K L + L+ + + W+ N +
Sbjct: 66 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLEADITIVAKECGWKYQNTIIWNES 125
Query: 143 RRFQNAHETLIW-----ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + +P F + K + M + + +G
Sbjct: 126 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTMSREEFLLYTNGLWSFSG 185
Query: 198 KDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ + L HP P L R + + D I DPF GSGT+ A L R +G+E++++
Sbjct: 186 ESKKHLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKE 245
Query: 257 YIDIATKRI 265
Y +++ KRI
Sbjct: 246 YCELSKKRI 254
>gi|308061616|gb|ADO03504.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
Cuz20]
Length = 252
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + D F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCVTSPPYNLSVEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIPIC 189
N + A A Y Y + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVIFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|308182437|ref|YP_003926564.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
PeCan4]
gi|308064622|gb|ADO06514.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
PeCan4]
Length = 252
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 93/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIPIC 189
N + A A Y Y + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWNFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|218891243|ref|YP_002440109.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
gi|218771468|emb|CAW27235.1| DNA methylase N-4/N-6 [Pseudomonas aeruginosa LESB58]
Length = 313
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 57/304 (18%), Positives = 95/304 (31%), Gaps = 82/304 (26%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
+P +S PPY + + + + A RR
Sbjct: 1 MPDQSFHCCITSPPYFGLRDY-----------GMASQIGLEQTPAEFVARLVEVFREVRR 49
Query: 95 VLKPNGTLWVIGSY-----------------HNI-------------------------- 111
VL+ +GTLWV H+I
Sbjct: 50 VLRDDGTLWVNMGDSYASIAGGYAPEGSAGKHDIVSRNTRGAVRRGHRRKPAEGLKQKDL 109
Query: 112 ----FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---------- 157
+R+ LQ+ +++ DI+W K NPMP R AHE + +
Sbjct: 110 MGIPWRLAFALQDDGWYLRQDIIWHKPNPMPESVRDRCTKAHEYVFMLTKSRRYYYDHEA 169
Query: 158 --------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN------KDGEKL 203
P G+ + + +D G R+ +
Sbjct: 170 VKEDAVSEHPSGNGFKRDARESYKNLDGTARGNDEQWTGVGGKRNRRSVWTVPTAGFKGA 229
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
H P L+ +++ G ++LDPF G+GT+ VA + R + IE+ +Y IA
Sbjct: 230 HFATFPPDLIRPCVLAGAPRGGLVLDPFGGAGTTALVAMQEGRRSVLIELNPEYAAIARN 289
Query: 264 RIAS 267
R+ +
Sbjct: 290 RLDT 293
>gi|320536136|ref|ZP_08036189.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
gi|320147053|gb|EFW38616.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
Length = 297
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 53/300 (17%)
Query: 20 KDKII-KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA---VTDSWDKF 75
+ II G+++ +++++ +S+DL+ PPY + S V + D F
Sbjct: 1 MNHIIACGDTLELVKQIRRESIDLLVTSPPYWAKRVYNGEGEIGSEKTPEAYVENLADFF 60
Query: 76 SSFEAYDA------------FTRAWLLACRRVLKPNGTLWVIGSYHN------------- 110
+ + + F + A + + +G +
Sbjct: 61 DTLKPHLKPSANLFINIGDTFFGSGAGAWSKYVDEDGNITQAKKDRKEKYFTTKPLQPKI 120
Query: 111 ---------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
R +Q + + +DI+W K N +P RF N +E +
Sbjct: 121 KQNGKLYQNKQLLLIPSRFAIEMQERGWLLRDDIIWYKPNRIPASVTDRFNNTYEHVFHF 180
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
+ K Y FN DA+ + ++ + + + H PE L+ +
Sbjct: 181 VLNKK---YFFNLDAV------KVLGANSRMKNPGDVWPINTQPLNGNHTATFPEKLVEQ 231
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
I++ ++ G + DPF G+GT+ V +L R+ +G E+ +Y + A R + LG+
Sbjct: 232 IVLCASPEGGTVFDPFLGTGTTWIVCDRLGRNCVGFEINYEYFEFAQNRFDESRGLGDEY 291
>gi|257461052|ref|ZP_05626150.1| adenine-specific DNA methylase [Campylobacter gracilis RM3268]
gi|257441426|gb|EEV16571.1| adenine-specific DNA methylase [Campylobacter gracilis RM3268]
Length = 823
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 57/316 (18%), Positives = 117/316 (37%), Gaps = 72/316 (22%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQ 56
+S KN L + ++ E + +++K ++ + L L +DLI+ DPP+N + +
Sbjct: 360 LSNKNRLDLLSRFENLDEILNGELVKSDNFAALNTLMPRYKGKIDLIYIDPPFNTGSDFE 419
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
D+F + + L R +L G+ ++ + F
Sbjct: 420 YK--------------DRFQD-ATWLTLMQNRLELAREILSDRGSFYLHLDENADFLGRM 464
Query: 117 MLQNLNFWILNDIVWRKSNPMPN-------------------------------FRGRRF 145
+L + + + +N + F
Sbjct: 465 LLDEIFNFDECKKITFNTNATKDEEADLFGYKSFGNNFALKSSTIFFIKNGNSIFNKLWK 524
Query: 146 QNAHET---------LIWASPSPKAKGYTFNYDALKAANEDVQMRSD------------- 183
N + + + A + K +N+ + N+ ++++S
Sbjct: 525 PNRNISQLNLGQLDLIAVAKTNCPKKIKDYNFLIEQYENDKLKLQSVDISNEKIYPVGDI 584
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
W +R + + +QKPE ++ RI+ +S+ +++LD F GSGT+ +VA K
Sbjct: 585 WNDIYSFTQSEMRVSENISFYSSQKPEHMIRRIIQASSNQNNLVLDFFTGSGTTCSVAHK 644
Query: 244 LRRSFIGIEMKQDYID 259
L+R +IGIEM + +
Sbjct: 645 LKRRWIGIEMGNHFYE 660
>gi|158423793|ref|YP_001525085.1| site-specific DNA-methyltransferase [Azorhizobium caulinodans ORS
571]
gi|158330682|dbj|BAF88167.1| site-specific DNA-methyltransferase [Azorhizobium caulinodans ORS
571]
Length = 315
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/253 (20%), Positives = 81/253 (32%), Gaps = 35/253 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--QLYRPDHSLVDA------VTDSWD 73
+ G+++ +L L SV + DPPY+ RP + + +
Sbjct: 85 TLYLGDALEILPTLAPGSVGAVLCDPPYSSGGASLSDRSRPTSAKYQSSEHRGLYPEFQG 144
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+Y A++ WL R + P V + + LQ + W K
Sbjct: 145 DTRDQRSYLAWSTLWLSRARMLAAPGALCAVFTDWRQLPVTSDALQCAGWVWRGVAPWDK 204
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ GR A + P+ G
Sbjct: 205 TERGRPQLGRYRAQAEYVVW-----------------------GTNGARPLKGPVAPGVF 241
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R K H KP L+ ++ P ILDPF GSGT G + +IGIE+
Sbjct: 242 R-APIPHVKHHIAGKPVELMEGLMSIMEGP---ILDPFMGSGTVGLACARKGLPYIGIEV 297
Query: 254 KQDYIDIATKRIA 266
+ Y +IA R+
Sbjct: 298 EPAYYEIALSRLE 310
>gi|317177078|dbj|BAJ54867.1| adenine specific DNA methyltransferase [Helicobacter pylori F16]
Length = 255
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 91/256 (35%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + D F ++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCVTSPPYNLSIEY----------QGSND----FRVYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIPIC 189
N + A A Y Y + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVIFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|188527069|ref|YP_001909756.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
Shi470]
gi|188143309|gb|ACD47726.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
Shi470]
Length = 252
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 93/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCITSPPYNLSVEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIPIC 189
N + A A Y Y + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWNFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|166366294|ref|YP_001658567.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
NIES-843]
gi|166088667|dbj|BAG03375.1| site-specific DNA-methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 312
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 62/306 (20%), Positives = 112/306 (36%), Gaps = 48/306 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN------------LQLNGQLYRPDHSLVDAV- 68
+++ G+ +L L S+ + DPPYN +Q + + +LV +
Sbjct: 8 QLLHGDCRELLTLLEESSISCVITDPPYNYEFIGRNWDHDEIQRRRERIQNSSTLVKNIP 67
Query: 69 ----------TDSWDK--FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ W + + Y + W RV K + V S + I
Sbjct: 68 YGSGLAGGVRNERWYQRNRENVVNYIEWATDWSKELMRVCKSGAVVAVFSSTRTLAHIQI 127
Query: 117 MLQNLNFWILNDIVWRKSNPMPNF-------RGRRFQNAHETLIWASPSPKAKGYTFNYD 169
L+N F+ + +V+R+ + +P NA + W +
Sbjct: 128 ALENAGFYARDVLVYRRHSGIPKGLNIEKKLDKIGDTNAQQWQGWHTCLRNEWEAIVIVQ 187
Query: 170 ALKAAN-----------EDVQMRSD--WLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
N + SD + I G + R+++ ++ H T KP +L+ ++
Sbjct: 188 KPLKNNYIETLQMTGLGPFKAILSDGSFQSNILEGFSKGRDENFDE-HCTIKPLSLIRKL 246
Query: 217 LVSSTKPGD--IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
L + I+LDPF G+GT+ A +L IGIE++ YI+I +R+
Sbjct: 247 LELFLPQDNSHIVLDPFAGTGTTLIAALELGYQTIGIEIEAQYINIIQQRLGEYFGKIGQ 306
Query: 275 ELTVLT 280
E V
Sbjct: 307 EFEVFD 312
>gi|304316273|ref|YP_003851418.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777775|gb|ADL68334.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 417
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 28/265 (10%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V + + + +F DPP+N+ P + D+ S
Sbjct: 169 HRLMCGDSTLLSDVQKLMDGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MS 224
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E + AF + V + +V+ S + +++ + + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFKCMKEVSEAGCMTYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV 284
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + + Y + +D + W +P SE
Sbjct: 285 LSRK------------DYHTQYEPIWYGWLEGTRLCPLKDRKQSDVWEMPRPKVSEE--- 329
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP +L+++ +++S+ GD+ LD F GSGT+ A++ R +E+ Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSHIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDSKY 383
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
D+ KR S ++ L + K
Sbjct: 384 CDVIVKRYVSQFGADSVFLLSGSEK 408
>gi|237740968|ref|ZP_04571449.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
gi|229431012|gb|EEO41224.1| modification methylase HinfI [Fusobacterium sp. 4_1_13]
Length = 90
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 55/78 (70%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI KG+SI VL+ P++SVD IFADPPY +Q G+L R D + + V D WDKF SF+
Sbjct: 10 NKIYKGDSIEVLKTFPSESVDFIFADPPYYMQTEGELLRTDGTKFNGVEDEWDKFWSFQD 69
Query: 81 YDAFTRAWLLACRRVLKP 98
YD FT+ WL C+RVLK
Sbjct: 70 YDNFTKQWLGECKRVLKK 87
>gi|163855603|ref|YP_001629901.1| adenine DNA methyltransferase protein [Bordetella petrii DSM 12804]
gi|163259331|emb|CAP41631.1| adenine DNA methyltransferase protein [Bordetella petrii]
Length = 319
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 65/317 (20%), Positives = 109/317 (34%), Gaps = 79/317 (24%)
Query: 14 NSIFEWKDKIIKGNSISVLEKL-PAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
N W D+ G+ +L+++ V + PPY L L
Sbjct: 6 NDAGRWLDRTHAGDCRQLLKRMYQDGVRVQMCVTSPPYF-GLRSYLPAGHPDK----RLE 60
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------------- 110
+ + Y A R+VL +GTLWV+
Sbjct: 61 IGRQITVRKYIRDLVDVFRAVRQVLADDGTLWVVIGDTYAATRTWQAPSTRGGPKHAAAQ 120
Query: 111 --------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+ + L+ +++ DIVW K NPMP R +HE
Sbjct: 121 QAAGGMRTGDGLKPKDMMGIPWALAFALRRDGWYLRQDIVWAKPNPMPESVADRCTRSHE 180
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER---------------- 194
L + + Y F+ DA++ + D + + ER
Sbjct: 181 YLFLLAKNR---HYYFDQDAIREPSTDPRGPGNIRPVSAPPGERASSGNANLRGSLHKIG 237
Query: 195 ------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ +K H P+ L++ +++ ++ GD +LDPF GSGT+ A
Sbjct: 238 ARSTRNRRDVWTIASKPFRGGHFAVFPDTLVTPCILAGSRAGDTVLDPFMGSGTTAVAAL 297
Query: 243 KLRRSFIGIEMKQDYID 259
+L+R FIG E+ + +ID
Sbjct: 298 RLQRHFIGCELNRSFID 314
>gi|116486901|emb|CAH64694.1| DNA methylase [Wolbachia endosymbiont of Drosophila yakuba]
gi|116486903|emb|CAH64695.1| DNA methylase [Wolbachia endosymbiont of Drosophila santomea]
Length = 408
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 36/272 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + + D+ DPPYN+ R D +++
Sbjct: 166 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 218
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 219 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 275
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W
Sbjct: 276 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPI------- 316
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ + +V+S++PGD +LDPF GSG++ ++ R IE+ +
Sbjct: 317 --HNSLHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKF 374
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
+D+ KR G + TGK
Sbjct: 375 VDVTIKR--WQVYTGREAILSGTGKTFAQIQE 404
>gi|15320575|ref|NP_203418.1| DNA adenine methylase Mox [Myxococcus phage Mx8]
gi|15281685|gb|AAK94340.1|AF396866_5 DNA adenine methylase Mox [Myxococcus phage Mx8]
gi|2105127|gb|AAC48900.1| DNA adenine methyltransferase [Myxococcus phage Mx8]
Length = 258
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 58/254 (22%), Positives = 91/254 (35%), Gaps = 42/254 (16%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
L A+SVD I DPPY + +D + W R
Sbjct: 25 ALQAESVDAIVTDPPY-------------------------GETALEWDRWPVGWPGLVR 59
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP----MPNFRGRRFQNAH 149
+LK G++W GS+ + + + + D+VWRK N FR Q H
Sbjct: 60 PLLKRTGSMWCFGSFRMWWDKRDEFVSGGWVVAEDVVWRKQNGSGFATDRFRRVHEQPVH 119
Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD------WLIPICSGSERL-------R 196
A+ DA G RL R
Sbjct: 120 FYRADAAWRDVFHQVPVTMDAKARTVTRRAQPPHLGAIGAHKYTSEDGGPRLMTSVLEVR 179
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N G ++ TQKP AL+ ++ ++ PG ++ D F GSG++ R FIG ++++
Sbjct: 180 NCHGFAVNETQKPVALVEPLVRNACPPGGLVADFFAGSGSTALACLATGRRFIGCDIREA 239
Query: 257 YIDIATKRIASVQP 270
+ A + ++ V P
Sbjct: 240 QCEAAARELSQVLP 253
>gi|42520448|ref|NP_966363.1| prophage LambdaW4, DNA methylase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410187|gb|AAS14297.1| prophage LambdaW4, DNA methylase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|116486893|emb|CAH64690.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
gi|116486895|emb|CAH64691.1| DNA methylase [Wolbachia endosymbiont of Drosophila melanogaster]
Length = 408
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 36/272 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + + D+ DPPYN+ R D +++
Sbjct: 166 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 218
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 219 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 275
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W
Sbjct: 276 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPI------- 316
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ + +V+S++PGD +LDPF GSG++ ++ R IE+ +
Sbjct: 317 --HNSLHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKF 374
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
+D+ KR G + TGK
Sbjct: 375 VDVTIKR--WQVYTGREAILSGTGKTFAQIQE 404
>gi|301029835|ref|ZP_07192876.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
gi|299877318|gb|EFI85529.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
Length = 211
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 41/243 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ ++P ++D I DPPY + D + + + D + +
Sbjct: 1 MARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKTDEWLQPACNE 45
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RVLK + + ++ + R + +N F ++ +V+ K+ + HE
Sbjct: 46 MYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSKAAYVGYRHEC 102
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ D L G + HPT+KP
Sbjct: 103 AYILAKGRPRLPQNPLPDVLGW-----------------------KYSGNRHHPTEKPVT 139
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y +R+ +VQ
Sbjct: 140 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLTAVQRA 199
Query: 272 GNI 274
Sbjct: 200 MQQ 202
>gi|220920904|ref|YP_002496205.1| DNA methylase N-4/N-6 domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219945510|gb|ACL55902.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
2060]
Length = 464
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 23/252 (9%)
Query: 21 DKIIKGNSISVLEK----LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+++ G+++ LE L DL+F DPPYN+ + G + + + +
Sbjct: 188 HRLLCGDAL-ALESYAALLQGDLADLVFTDPPYNVPIEGHVSGLGATKHRDFAMASGEM- 245
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + AF +L R + +V + + T ++ + + VW KSN
Sbjct: 246 NEAEFTAFLARFLDLARAHSRDGSIHYVCMDAAHALELLTAVRQVGLSLKTTCVWAKSNG 305
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS----GS 192
+ N +A N ++ + S
Sbjct: 306 GMGS-------------LYRQQCEFVHVLKNGEAPHVNNVELGRHGRNRTTLWQYAGVNS 352
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
R + LHPT KP AL++ + +K ++LDPF GSGT+ A+K R +E
Sbjct: 353 FRRGRMEELSLHPTVKPVALVADAIKDCSKRRGVVLDPFSGSGTTLVAAEKTGRVARVLE 412
Query: 253 MKQDYIDIATKR 264
+ Y D+A +R
Sbjct: 413 LSPAYCDVAIRR 424
>gi|317181606|dbj|BAJ59390.1| adenine specific DNA methyltransferase [Helicobacter pylori F57]
Length = 252
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 93/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + Q + F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------NDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIKLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y ++ KRI
Sbjct: 230 GLEIEKEYCKLSKKRI 245
>gi|119355923|ref|YP_910567.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
phaeobacteroides DSM 266]
gi|119353272|gb|ABL64143.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
DSM 266]
Length = 429
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/259 (19%), Positives = 79/259 (30%), Gaps = 40/259 (15%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ LP SV LI PPY + + S+E+Y
Sbjct: 1 MNLLPDSSVHLIITSPPYWQLKDY-----------GTENQIGFHDSYESYINNLNLVWSE 49
Query: 92 CRRVLKPNGTLWVIGSYH-----NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
C RVL P L + R + + + ++
Sbjct: 50 CERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCETIGFDYMGAVIWQKVTTT 109
Query: 147 NAHETLIWASPSPKAKGYTFN-------------------YDALKAANEDVQMRSDWLIP 187
N + + Y N K E M ++
Sbjct: 110 NTTG----GASIMGSFPYPRNGILKLDYEFILLFKKQGDAPKPSKELKERSAMTTEEWNT 165
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
SG + H PE L R++ G+ +LDPF GSGT+ AK L R+
Sbjct: 166 CFSGHWNFAGAKQD-GHIAVFPEDLPHRLIRMFAFVGETVLDPFMGSGTTSLAAKNLDRN 224
Query: 248 FIGIEMKQDYIDIATKRIA 266
+G E+ ++I IA +++
Sbjct: 225 SVGYEINPEFIGIAREKLN 243
>gi|134298735|ref|YP_001112231.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134051435|gb|ABO49406.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
MI-1]
Length = 505
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 70/377 (18%), Positives = 118/377 (31%), Gaps = 88/377 (23%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR------------------ 59
+ II+G+++ L+ L A V I+ DPPYN+ + Y
Sbjct: 38 NMIIQGDNLEALKALLPYFAGQVKCIYIDPPYNIGAAFEHYDDNLEHSQWLQLIYPRLEL 97
Query: 60 ------PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP----------NGTLW 103
D S+ ++ DS + + F R +AC K + +
Sbjct: 98 LREFLSQDGSIWVSIDDSEAAYLKVIMDEIFGRKRFIACNVWQKRYSRENREAIGDVHEY 157
Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA----HETLIWAS--- 156
+ N + V+R N P R R H T
Sbjct: 158 IFTYAKNPDLFKKTRNMVPITEKQAKVYRNPNNDPLGRWRPVPMTAQEGHATPEQYYEVI 217
Query: 157 ----PSPKAKGYTFNYDALKAANE---------DVQMRSDWL-------------IPICS 190
K + + S
Sbjct: 218 TPTGKVHKPPKGRCWGISKATYEDLLAKGRIYFGKTGNSQPNIIRYIWQVPGVAPWTWWP 277
Query: 191 GSERLRNKDGEK----------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
E + +K T KPE L+ RI+ +T PGD+I+D F GSGT+ AV
Sbjct: 278 SEEVGHTDEAKKEIHALFGKIKAFDTPKPERLIQRIIHIATNPGDLIMDSFLGSGTTAAV 337
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
A K+ R +IG+EM + + R+ + G + P R +
Sbjct: 338 AHKMGRRYIGVEMGEQAVTHVVPRL-------QKVVEGEQGGISNPVDWQGGGGFR-FYR 389
Query: 301 PGQILTNAQGNISATVC 317
G+ + ++ G+++++V
Sbjct: 390 LGEPVFDSDGHLNSSVK 406
>gi|109947114|ref|YP_664342.1| adenine specific DNA methyltransferase [Helicobacter acinonychis
str. Sheeba]
gi|109714335|emb|CAJ99343.1| adenine specific DNA methyltransferase [Helicobacter acinonychis
str. Sheeba]
Length = 252
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSVEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWV-------------IGSYHNIFRIGTMLQNLNFWILNDI 129
+ + W C K L + +G+ I + N I N+
Sbjct: 57 NWCKNWFKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADMTIVAKECGWKYQNTIIWNES 116
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ ++ A + K + + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIIVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L SR + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPSRCIKLFSFLEDTIFDPFSGSGTTLLEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|118576081|ref|YP_875824.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194602|gb|ABK77520.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 320
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 58/278 (20%), Positives = 105/278 (37%), Gaps = 29/278 (10%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
++I++++ I D++ +S ++ ++P S++ + PPY + L
Sbjct: 31 MSISKSRARIRLDTDRVYYKDSR-MMTEIPDNSINCVITSPPYFSINDYSLDGYQRKRHS 89
Query: 67 AVTD-SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----------IGSYHNIFRI- 114
FE Y C RVL+PNG L + + + H I
Sbjct: 90 GNKAAQLGNIKKFETYIGELLKVWSECERVLRPNGKLIINAPLMPMLKRVYNTHFNRHIF 149
Query: 115 -------GTMLQNLNFWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSP 159
++L + ++L+ +W ++NP P QN E +
Sbjct: 150 NIHSEIQRSILDDTGLFLLDVYIWNRTNPSKKPMFGSYPYPSNFYAQNTIEFIAVYVKDG 209
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
K+ ++ + + + + HP PE + R +
Sbjct: 210 KSDNNISKTRKRRSRLTQKEWVE-YTKQVWDIPMPNKGDSAFGKHPAIMPEEIPRRCIRL 268
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
T GD++LDPF GSGT+ +AKKL R +IG E+ + Y
Sbjct: 269 FTFEGDVVLDPFSGSGTTLKMAKKLNRKYIGYEIMKSY 306
>gi|189461068|ref|ZP_03009853.1| hypothetical protein BACCOP_01715 [Bacteroides coprocola DSM 17136]
gi|189432158|gb|EDV01143.1| hypothetical protein BACCOP_01715 [Bacteroides coprocola DSM 17136]
Length = 252
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 89/266 (33%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + + WDK F
Sbjct: 11 TLYKADCLEVMPFLPESSIDLVLCDPPFGITAS----------------QWDKIIPFPEM 54
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
RRV K N + GS + D VW KS
Sbjct: 55 -------WKEIRRVRKENAPTVLFGSEPFSSFLR---CGNLDEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + R+++
Sbjct: 105 AKKQPLKAHELISVFGK--GRTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTFRHENK 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GTRYPRSVIYFKTAESEGKTIHVNQKPIALLEYLIKTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + Y KR+ +
Sbjct: 223 YTNRKCICIEKDETYFSQGEKRVRNE 248
>gi|85716202|ref|ZP_01047177.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
gi|85697035|gb|EAQ34918.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
Length = 513
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 70/377 (18%), Positives = 122/377 (32%), Gaps = 90/377 (23%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP----------------- 60
+ +I+G+++ L+ L A V I+ DPPYN + + Y
Sbjct: 39 NMLIQGDNLEALKALLPFYAGQVKCIYIDPPYNTRSAFEHYDDNLEHSQWLAMMWPRLEL 98
Query: 61 -------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC----RRVLKPNGTLWVIGSYH 109
D S+ ++ D+ + + F R+ +A +R + N IG H
Sbjct: 99 LRDLLAEDGSIWVSIDDAEGSYMKVILDEIFGRSRFIATNVWQKRYSRENREA--IGDVH 156
Query: 110 NIFRIGTM-----------------------------------LQNLNFWILNDIVWRKS 134
+ + + + ++ +
Sbjct: 157 EYIYVYAINPESFKKQRNRIPPTEEQAKIYKNPNNDPKGRWRGIPMTAQGYRPNQMYAIT 216
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS----DWLIPICS 190
P+ T+ KA+G + ++ S
Sbjct: 217 TPVGVVHRPPEGRCWSTIESEFEKLKARGRIWFGKDGTGQPNIIRYLSEVEGFVPWTWWP 276
Query: 191 GSERLRNKDGEK----------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
E +K T KPEAL+ RIL +T PGD++LD F GSGT+ AV
Sbjct: 277 SDEVGHTDQAKKEMHGLLGREDAFGTPKPEALIQRILHIATNPGDLVLDSFLGSGTTAAV 336
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
A K R +IGIEM + + R+ V + G +E R +
Sbjct: 337 AHKTGRRYIGIEMGEHSVTHCVPRLNKV-------IEGEQGGISESVGWKGGDGFR-FYR 388
Query: 301 PGQILTNAQGNISATVC 317
G + + +G+I + +
Sbjct: 389 LGPPVFDEEGHIRSDIR 405
>gi|256544782|ref|ZP_05472154.1| DNA methylase N-4/N-6 [Anaerococcus vaginalis ATCC 51170]
gi|256399671|gb|EEU13276.1| DNA methylase N-4/N-6 [Anaerococcus vaginalis ATCC 51170]
Length = 321
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 61/320 (19%), Positives = 100/320 (31%), Gaps = 84/320 (26%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II ++IS L++ P K D PPY + + + S E
Sbjct: 10 NYIINLDAISALKEFPDKIFDCCITSPPYYGLRDYKA-----------EGQIGREESPEE 58
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG--------------SYHNI--------------- 111
Y +RVLK GTLWV+ NI
Sbjct: 59 YLNKLIEVFREVKRVLKKEGTLWVVIGDSYAGTRSKKEYKDPKNIEGRSGQKEFITEKLS 118
Query: 112 -----------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ L+ +++ +DI+W K N MP R ++E + S + K
Sbjct: 119 GYKAKDLMGIPWQLALKLREDGWYLRSDIIWHKENAMPESCRDRPSRSYEHIFLLSKARK 178
Query: 161 AKGYTFNYDALKAANEDVQMR---------------------------------SDWLIP 187
+ +
Sbjct: 179 YFYNFDAMKEPIKEISKKRYMRARGKDNKYLQEGTGAKRQSINEAREYGEYIGDNVPKFR 238
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + H P L+ + + +I+DPF GSGT G VA ++ R
Sbjct: 239 NNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLIIDPFMGSGTVGMVAIRMDRE 298
Query: 248 FIGIEMKQDYIDIATKRIAS 267
+IGI++ +DY IA +RI
Sbjct: 299 YIGIDINKDYCQIAKERIEK 318
>gi|325495846|gb|EGC93706.1| putative methylase [Escherichia fergusonii ECD227]
Length = 215
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 41/243 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ ++P ++D I DPPY + R ++ TD W +
Sbjct: 1 MARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDKTDEW------------LQPACNE 45
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RVLK + + ++ + R +N F ++ +V+ K+ + HE
Sbjct: 46 MFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSKAAYVGYRHEC 102
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ D L G + HPT+KP
Sbjct: 103 AYILAKGRPRLPQNPLPDVLGW-----------------------KYSGNRHHPTEKPVT 139
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L ++ + T P I+LDPF GSG++ A + R +IGIE+ + Y +R+A+VQ
Sbjct: 140 SLQPLIENFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRA 199
Query: 272 GNI 274
Sbjct: 200 MQQ 202
>gi|57234105|ref|YP_181827.1| type III restriction-modification system, methylase subunit
[Dehalococcoides ethenogenes 195]
gi|57224553|gb|AAW39610.1| type III restriction-modification system, methylase subunit
[Dehalococcoides ethenogenes 195]
Length = 587
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 44/317 (13%), Positives = 102/317 (32%), Gaps = 74/317 (23%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ + V LIF DPPYN +
Sbjct: 94 EESVNWDSTENLYIEGDNLEVLKLIQESYMGKVKLIFIDPPYNTGSDFIYADDFAVGSAE 153
Query: 68 VTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+D + + + + + L+ R +L +G++++ ++ +
Sbjct: 154 YSDEIGEVDADGNRLFKNTDSNGRFHSDWCSMMYSRLMLARNLLTDDGSIFISIDFNEVE 213
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN---AHETLIWASPSPKAK----GYT 165
+ ++ + + N H+T+++ S + Y
Sbjct: 214 NLKKIMDEVFGAENFQREIVWRIGWLSGYKTMAPNFIRNHDTILFYSKNSSKIEFIKKYI 273
Query: 166 FNYDALK---------------------------AANEDVQMRSDWLIPICSGSER---- 194
N D N + + + +E
Sbjct: 274 ENKDFKPLLKKDAKVTAKLKSLGLSDEQQKELLEFINHGNRPERYPIEDTWNSNEYDDLN 333
Query: 195 ------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ D ++ QK +L RI+ ++TK DI++D F G+G++
Sbjct: 334 SIAIVSFSGEKISKILDVDQDFKGQKSVKMLMRIIEATTKEDDIVMDFFSGTGSTAHAVM 393
Query: 243 KLR------RSFIGIEM 253
++ R +I +++
Sbjct: 394 QMNAEDGCHRKYIMVQL 410
>gi|268318070|ref|YP_003291789.1| DNA methylase N-4/N-6 domain-containing protein [Rhodothermus
marinus DSM 4252]
gi|262335604|gb|ACY49401.1| DNA methylase N-4/N-6 domain protein [Rhodothermus marinus DSM
4252]
Length = 396
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 54/307 (17%), Positives = 96/307 (31%), Gaps = 33/307 (10%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ ++ KS+DLI PPY + V S Y
Sbjct: 1 MIEVEDKSIDLIVTSPPYWHIKDY-----------GVPGQIGYGQSLHEYLKDLYRVWKE 49
Query: 92 CRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
C RVLKP L V R + + F + + ++ +
Sbjct: 50 CYRVLKPGRRLCVNIGDQFARSIIYGRYKIIPLHAEFIAQCEEIGFDYMGAIIWQKKTTM 109
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--- 203
N P D +SD + +L ++ ++
Sbjct: 110 NTTGGANVMGSYPYPPNGMIEIDYEFILIFKKPGKSDKVAQTLKEKSKLSKEEWKEYFLG 169
Query: 204 -----------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
H P+ L R++ + D +LDPF GSGT+ VA L R+ +G E
Sbjct: 170 HWYFGGARQIEHEAMFPDELPKRLIKMFSFVDDTVLDPFLGSGTTVKVALNLGRNAVGYE 229
Query: 253 MKQDYIDIATKRI---ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
+ ++ I ++I S N+++ + +V + ++ Q N +
Sbjct: 230 INDKFVSIMKEKIGLGKSSLQFDNVQIVKREIEEKFEKVNYFPRIKDAKPQIDPKKFNFK 289
Query: 310 GNISATV 316
+ V
Sbjct: 290 NDRLYKV 296
>gi|167757886|ref|ZP_02430013.1| hypothetical protein CLOSCI_00217 [Clostridium scindens ATCC 35704]
gi|167664540|gb|EDS08670.1| hypothetical protein CLOSCI_00217 [Clostridium scindens ATCC 35704]
Length = 417
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 54/279 (19%), Positives = 95/279 (34%), Gaps = 35/279 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ V + K +LI DPPY + D +T D
Sbjct: 170 RHRLLCGDATRTEDVERLMDGKKANLIVTDPPYGVSFKSS---------DGLTIQNDSMK 220
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F L+ G+ +V + + F + +W K++
Sbjct: 221 DEEFY-TFLLTAFQCMAEHLENGGSAYVFHADTEGLNFRKAFIDAGFHLAGVCIWVKNSL 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +Q HE +++ + + N D
Sbjct: 280 VLG--RSDYQWQHEPVLFGWKKGGKHSWYSDRRQTTIWNYDKP----------------- 320
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL + +S++ IILD F GSG++ ++L R +E+ +
Sbjct: 321 --KRNKNHPTSKPLDLLGYPICNSSQENAIILDTFGGSGSTLMACEQLNRICHMMELDEK 378
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
Y + +R + V+ G P A VE
Sbjct: 379 YASVILRRY-VEDTGDKENVYVIRGDEQIPYSALVKEVE 416
>gi|317481266|ref|ZP_07940337.1| DNA methylase [Bacteroides sp. 4_1_36]
gi|316902599|gb|EFV24482.1| DNA methylase [Bacteroides sp. 4_1_36]
Length = 264
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 88/266 (33%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + WDK F
Sbjct: 11 TLYKADCLEVMPLLPESSIDLVLCDPPFGTTAS----------------QWDKIIPFPEM 54
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
RRV K N + GS + + D VW KS
Sbjct: 55 -------WKEIRRVRKENAPTALFGSEPFSSLLRY---SNLDEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + RN++
Sbjct: 105 AKKQPLKAHELISVFCK--GKTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPAFRNENR 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GIRYPRSVKYFKTAESEGKTIHVNQKPIALLQYLIKTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + Y R+ +
Sbjct: 223 YTNRKCICIEKDEKYFSQGEGRVRNE 248
>gi|218781601|ref|YP_002432919.1| DNA methylase N-4/N-6 domain protein [Desulfatibacillum
alkenivorans AK-01]
gi|218762985|gb|ACL05451.1| DNA methylase N-4/N-6 domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 394
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 64/293 (21%), Positives = 111/293 (37%), Gaps = 33/293 (11%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I G+S + ++++ +S+DL+ PPY +Q+ ++ + + + ++E
Sbjct: 10 HQMIHGDS-TAMKEIKDQSIDLVVTSPPYPMIQMWDAIFSAQDQEIGNLLERGYGLKAYE 68
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNFWILN 127
C RV+K L + Y N RI + L +L F IL
Sbjct: 69 RMHDILDKVWAECFRVMKSGAILCINIGDATRSIDGEFSLYPNHARILSSLTDLGFSILP 128
Query: 128 DIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+I+WRK PN G HE ++ A K + + + +
Sbjct: 129 EILWRKQTNAPNKFMGSGMLPGGAYVTLEHEFILVARKGGKREFKGVEKQNRQNSAYFWE 188
Query: 180 MRSDWLIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
R+ W + + R + GEK P L R++ + GD +LDPF G GT
Sbjct: 189 ERNTWFSDVWMDLKGARQEIGEKNLRERSAAFPFELPFRLINMYSAKGDAVLDPFGGLGT 248
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
+ A R+ E ++ ++ V T KR E R+A
Sbjct: 249 TILAAMACGRNSRAYEQDEE--------LSRVFSPEASNFTGFANKRQEERLA 293
>gi|281418288|ref|ZP_06249308.1| ParB domain protein nuclease [Clostridium thermocellum JW20]
gi|281409690|gb|EFB39948.1| ParB domain protein nuclease [Clostridium thermocellum JW20]
Length = 417
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 28/265 (10%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V + + + +F DPP+N+ P + D+ S
Sbjct: 169 HRLMCGDSTMLSDVQKLMNGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MS 224
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E + AF + V + +V+ S + +++ + + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFKCMKEVSEAGCMTYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV 284
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + + Y + +D + W +P SE
Sbjct: 285 LSRK------------DYHTQYEPIWYGWLEGTRLCPLKDRKQSDVWEMPRPKVSEE--- 329
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP +L+++ +++S+ GD+ LD F GSGT+ A++ R +E+ Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSHTGDLALDLFGGSGTTMIAAQQTGRVCFMMELDSKY 383
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
D+ KR S ++ L + K
Sbjct: 384 CDVIVKRYVSQFGADSVFLVTGSEK 408
>gi|10954486|ref|NP_039775.1| DNA modification methylase [Methanothermobacter thermautotrophicus]
gi|266584|sp|P29568|MTHZ_METTF RecName: Full=Modification methylase MthZI; Short=M.MthZI; AltName:
Full=N-4 cytosine-specific methyltransferase MthZI
gi|44647|emb|CAA48447.1| ZIM [Methanothermobacter thermautotrophicus]
gi|44659|emb|CAA47651.1| mthZIM [Methanothermobacter thermautotrophicus]
Length = 355
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 64/296 (21%), Positives = 106/296 (35%), Gaps = 29/296 (9%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDK 74
+ +I NS + +L KS++L+ PPY + + + + + + D D
Sbjct: 1 MKTTHRIYFKNSAD-MNELKDKSINLVVTSPPYPMVEIWDRLFSELNPKIEETLIDEEDG 59
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLN 122
S+ RV P G + + Y N R +
Sbjct: 60 LRSYNLMHEELEKVWHEVDRVTAPGGVVIINIGDATRKIGKKFQLYPNHVRTIDFFFDRG 119
Query: 123 FWILNDIVWRKSNPMPNF---RGRRFQNA-----HETLIWASPSPKAKGYTF-----NYD 169
+ +L I+WRK + P G NA HE ++ + T +
Sbjct: 120 YQVLPFIIWRKQSNKPTKFMGSGMLPPNAYVTHEHEYILIFRKEGPRQFKTEEERKLRRE 179
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ E Q SD + S+RL +K+ K P L R++ + GD +LD
Sbjct: 180 SAYFWEERNQWFSDVWTDLTGVSQRLNHKNLRKR-AAAYPFELAYRLINMYSIMGDWVLD 238
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
PF G+GT+ A R+ IG E+ ++ D+ RI L N + E
Sbjct: 239 PFLGTGTTMIAAACAGRNSIGYELDHNFKDLIESRINETLKLSNEIVMRRINDHIE 294
>gi|262113732|emb|CAR95399.1| hypothetical protein [Streptococcus phage phi-m46.1]
Length = 442
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 100/260 (38%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S V + L K +L+ DPPYN+ + + + D
Sbjct: 195 KHRVICGDSTKVETYEQLLGDKKANLVVTDPPYNVDVEETAGKILN----------DNMP 244
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F + ++ + +++V + ++ F++ +W+K++
Sbjct: 245 DSEFY-QFLFDMFTQVEKHIESDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKTSL 303
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE ++ + + D S
Sbjct: 304 VLGRSPYQW--QHEPCLFGWKQKGKHQWFSDRKQTTIWEYDRPKSS-------------- 347
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G ++LDPF GSG++ A + R GIE+ +
Sbjct: 348 -----KDHPTMKPIPLMAYPIQNSSMRGTLVLDPFLGSGSTLMAADQTGRVCYGIELDEK 402
Query: 257 YIDIATKRIASVQPLGNIEL 276
++D+ KR N+ +
Sbjct: 403 FVDVIVKRYIESTGNDNVTV 422
>gi|331090243|ref|ZP_08339131.1| hypothetical protein HMPREF1025_02714 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330402189|gb|EGG81761.1| hypothetical protein HMPREF1025_02714 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 421
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 45/265 (16%), Positives = 100/265 (37%), Gaps = 35/265 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+SI L +L+ DPPYN+ + + + D +
Sbjct: 168 KHRVICGDSILPETYNILMDGRKANLVLTDPPYNVDVEETAGKIKN----------DNMA 217
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + ++ + +++V + + F + +W+K+
Sbjct: 218 DEDFY-RFLFAAFVNMEQNMEDDASIYVFHADTEGLNFRKAFADAGFKLSGCCIWKKNAL 276
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K + Y+ +
Sbjct: 277 VLGRSPYQWQHE-PCLFGWKKGGKHQWYSDRKQTTIWEYD-------------------- 315
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP AL++ + +S+ G ++L+PF GSG++ ++ R G+E+++
Sbjct: 316 RPKASKDHPTMKPIALMAYPVQNSSMMGCVVLNPFLGSGSTLMACEQTGRICYGVELEEK 375
Query: 257 YIDIATKRIASVQPLGNIELTVLTG 281
++D+ R ++ + +
Sbjct: 376 FVDVIVNRYMEMKGSADDVFVIRNN 400
>gi|75909223|ref|YP_323519.1| DNA methylase N-4/N-6 [Anabaena variabilis ATCC 29413]
gi|75702948|gb|ABA22624.1| DNA methylase N-4/N-6 [Anabaena variabilis ATCC 29413]
Length = 301
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 58/317 (18%), Positives = 102/317 (32%), Gaps = 74/317 (23%)
Query: 9 INENQNSIFEWKDKI----------IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
+N Q + E + I G+ + +++ +P SV+LI PP+ L +
Sbjct: 1 MNSQQTTTIELTNFIPSYTQQHGAVYLGDCLEIIKSIPDNSVNLILTSPPFALTRKKEYG 60
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-------------- 104
S E Y + + +RVL NG+ +
Sbjct: 61 N----------------ESAEKYIEWFLPFADEFKRVLAENGSFILDLGGAYLPGNPVRS 104
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDI------------------------VWRKSNPMPNF 140
I Y + R+ + + + PN
Sbjct: 105 IYQYELLVRLCKEVGFFLAQEFYHYNPARLPTPAEWVTIRRVRVKDAVNIVWWLSKTPNP 164
Query: 141 RGRRF----QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE--- 193
+ + KA+ +D +D Q + + +E
Sbjct: 165 KADNKKILKPYSQSMKRLLKKGYKAQVRPSGHDISDKFQKDNQGAIPPNLLEIANTESNS 224
Query: 194 ---RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
R G K HP + P+ + T GD++LDPF GS T+G VA+ +R +I
Sbjct: 225 TYLRRCKAAGVKPHPARFPQGFAEFFIKFLTDEGDLVLDPFAGSNTTGFVAETFQRRWIA 284
Query: 251 IEMKQDYIDIATKRIAS 267
+E+ QDY+ + R +
Sbjct: 285 VEINQDYVLGSRYRFSE 301
>gi|134297342|ref|YP_001121077.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134140499|gb|ABO56242.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
G4]
Length = 420
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 34/249 (13%)
Query: 21 DKIIKGN-----SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G+ S L L + V +I++D PYN+ + +
Sbjct: 173 HRLVCGDATQPFSYEQL--LAGQRVQMIWSDLPYNVNYANSAKDKLRGKHRPILND---- 226
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ E + F L +G +++ S + + + I+W K
Sbjct: 227 NLGEGFYDFVFDALSLMLPHC--DGAVYIAMSSSELDTLQAAFRAAGGKWSTFIIWAKHT 284
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ Y + + + D W +
Sbjct: 285 FTLGRA------------DYQRQYEPILYGWPEGSSRHWCGDRDQGDVWN---------I 323
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ LHPT KP L+ R + +S++PGD++LD F GSG++ A+K R +E++
Sbjct: 324 KKPARNDLHPTMKPVELMERSIRNSSRPGDVVLDCFGGSGSTLIAAEKSGRRCFMMELEP 383
Query: 256 DYIDIATKR 264
Y D+ +R
Sbjct: 384 KYCDVIVRR 392
>gi|206602570|gb|EDZ39051.1| DNA methyltransferase [Leptospirillum sp. Group II '5-way CG']
Length = 350
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 84/275 (30%), Gaps = 42/275 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ + ++ +L+ SV L+ PPY R + A+TD D
Sbjct: 73 RHDLFHSDAR-LLDSFVPNSVHLVLTSPPYWTLKKY---REHSKQLGAITDYRD------ 122
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--------IGTMLQNLNFWILNDIVW 131
+ AC +VL P G L + + R + + ++
Sbjct: 123 -FLNELDKVWRACYQVLVPGGRLVCVVGDVCLSRRKNGGEHTVVPLHASIQERCRAIGYA 181
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ------------ 179
S + N A P D +
Sbjct: 182 NLSPIVWNKIANAKYEAEGNGGGFLGKPYEPNSVIKNDIEFILMQRKMGGYRSPSVATRI 241
Query: 180 -------MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
DW I G + HP P L R++ + GD +LDPF
Sbjct: 242 LSVIPANRHKDWFQQIWMGVTGASTRH----HPAPFPIELAERLIRMFSFVGDTVLDPFM 297
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
G+GT+ A R+ IGIE+ Q+Y T+RI
Sbjct: 298 GTGTTNVAAGLWGRNSIGIEVDQEYFLFGTQRIEK 332
>gi|291535300|emb|CBL08412.1| DNA modification methylase [Roseburia intestinalis M50/1]
Length = 264
Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats.
Identities = 56/257 (21%), Positives = 86/257 (33%), Gaps = 39/257 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I L LP SVD++ DPPY N WD
Sbjct: 21 LFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRNF----------------WDVPLPL---- 60
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP--NF 140
A + +KP+G + + + + + VW KS N
Sbjct: 61 ---PELWEAVKWAVKPDGAVLFFA---QCPYDKVLGASNLSMLRYEWVWYKSRCTGFLNA 114
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMRSDWLIPICSGSERLRNK 198
R + L++ P K + D + SGSE
Sbjct: 115 RRAPLKRTENILVFYQKLPYYDPQFEQGKPYKKISRTGDNSPNYGKFLRSSSGSEDGLRF 174
Query: 199 DGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G +HPTQKP L ++ + T+PG+++ D GSGT+ A + R F+
Sbjct: 175 PGNLLSFSSVQRTVHPTQKPVELCEYLIKTYTRPGEVVADICAGSGTTAVAALNMGRRFV 234
Query: 250 GIEMKQDYIDIATKRIA 266
E + AT+RI
Sbjct: 235 CFETAPAFYAPATERIR 251
>gi|313667109|gb|ADR73002.1| M.BspCNI [Bacillus sp. 1310(2010)]
Length = 271
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 97/291 (33%), Gaps = 51/291 (17%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + +++I+G+ + V++ +P KSVD+I D PY + WD
Sbjct: 2 LNNYLNQVIQGDCLEVMKGIPNKSVDMILCDLPYGT----------------TQNKWDSV 45
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ +R+LK NG VI ++ + W +VW KS
Sbjct: 46 IPLD-------LLWKEYKRILKDNG---VIVLTSQGIFTANLMLSNPSWFKYKLVWEKSK 95
Query: 136 PMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFN----YDALKAANEDVQMRSDWLIPICS 190
++ HE + YD N+ D+
Sbjct: 96 ATNFLNAKKQPLRKHEDICVFYKKQPVYNPQMRDGDPYDKGIRKNQLTGSYGDFKPVHVV 155
Query: 191 -GSERLRNK---------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+R +G H TQKP L ++ + T G +LD GSG+
Sbjct: 156 SDGKRYPTDVIYFKTAESEGTVYHATQKPVELGRYLIRTYTNEGATVLDNACGSGSFLVS 215
Query: 241 AKKLRRSFIGIEMKQDY----------IDIATKRIASVQPLGNIELTVLTG 281
A +R+FIGIE +D I++ KRI E
Sbjct: 216 AILEKRNFIGIEKNEDVELYKNEKIDLIEVCNKRIEDAFKKVKRENITYEK 266
>gi|119944476|ref|YP_942156.1| DNA methylase N-4/N-6 domain-containing protein [Psychromonas
ingrahamii 37]
gi|119863080|gb|ABM02557.1| DNA methylase N-4/N-6 domain protein [Psychromonas ingrahamii 37]
Length = 220
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 37/248 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ K ++++ L L +SVDL+ DPPY + G R S A ++ W S
Sbjct: 2 QVYKDDAVNWLSTLADESVDLLITDPPYESLEKHRKIGTTTRLKVSK--ASSNEWFGIFS 59
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ +++ L RVLK N ++ +F I + + + F I+W K
Sbjct: 60 NDRFESL----LTEIYRVLKKNSHFYLFCDQETMFVIKPIAEKVGFKFWKPIIWDKVCIG 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G ++ HE +++ + ++ P +R+
Sbjct: 116 M---GYHYRARHEYILFFEK-------------------GKKKLNNLATPDILEYKRV-- 151
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PT+KP L+ ++ S+ G++++DPFFGSG + A+ L R + G ++ +
Sbjct: 152 ---FRGYPTEKPVPLMETLIAQSSVKGELVIDPFFGSGATLVAAQNLERRYSGCDLSESA 208
Query: 258 IDIATKRI 265
RI
Sbjct: 209 HQHYQNRI 216
>gi|76786905|ref|YP_329365.1| prophage LambdaSa04, DNA methylase [Streptococcus agalactiae A909]
gi|76561962|gb|ABA44546.1| prophage LambdaSa04, DNA methylase [Streptococcus agalactiae A909]
Length = 412
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/260 (18%), Positives = 98/260 (37%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + L K +LI DPPYN+ + + + D S
Sbjct: 165 KHRVICGDSTEAETYEQLLGDKKANLIVTDPPYNVDVEETAGKILN----------DNMS 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F ++ + +++V + ++ F++ +W+K++
Sbjct: 215 DRDFY-QFLFDMFTQVESHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGSCIWKKNSL 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE ++ + + D S
Sbjct: 274 VLGRSPYQW--QHEPCLFGWKQKGKHQWFSDRKQTTIWEYDRPKSS-------------- 317
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G ++ DPF GSG++ A + R GIE+ +
Sbjct: 318 -----KDHPTMKPIQLMAYPIQNSSMRGTLVFDPFLGSGSTLMAADQTGRVCYGIELDEK 372
Query: 257 YIDIATKRIASVQPLGNIEL 276
++D+ KR ++ +
Sbjct: 373 FVDVIVKRYMESTSNRDVSV 392
>gi|207091933|ref|ZP_03239720.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
HPKX_438_AG0C1]
Length = 252
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 93/256 (36%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + Q D F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------DDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPS----PKAKGYTFNYDALKAANEDVQMRSDWLIPIC- 189
N + A A Y + E+ + ++ L
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRESPKRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G+E++++Y +++ KRI
Sbjct: 230 GLEIEKEYCELSKKRI 245
>gi|283786302|ref|YP_003366167.1| prophage DNA methylase [Citrobacter rodentium ICC168]
gi|282949756|emb|CBG89375.1| putative prophage DNA methylase [Citrobacter rodentium ICC168]
Length = 243
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 40/264 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + V + + SVD++ AD PY WD E
Sbjct: 4 TLHNADCFDVFPTIASGSVDMVCADIPYGT----------------TQCCWDSVLDLEVM 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R+ KP+ + + + ++ + ++ +W K N
Sbjct: 48 -------WHELYRIAKPSAAIVLFSAQ---PFTAVLVGSNLADWRSEWIWEKGNATGFLN 97
Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------ 194
++ AHE + F + + ++ + S+ + ++
Sbjct: 98 AKKQPLRAHENIEVFYRRQPTYNPQFTHGHARRTSKRKTVNSECYGKALTLTKYDSTSRY 157
Query: 195 -------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+K HPTQKP AL+ ++ + + PGD +LD GSGT+G ++ R
Sbjct: 158 PRDVQFFSSDKQTGNFHPTQKPLALVQYLIETYSNPGDTVLDFTMGSGTAGVACLRVGRC 217
Query: 248 FIGIEMKQDYIDIATKRIASVQPL 271
FIGIE +A RI + Q
Sbjct: 218 FIGIEKDTSIFQVARHRIGTKQEH 241
>gi|283796833|ref|ZP_06345986.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
gi|291075240|gb|EFE12604.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
Length = 454
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/284 (17%), Positives = 108/284 (38%), Gaps = 23/284 (8%)
Query: 20 KDKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDH----SLVDAVTDSW 72
+ +++ G+S + L + DL+ DPPYN+ + D +
Sbjct: 173 RHRLMCGDSTSQDDMAVLMNGEIADLVVTDPPYNVNYGDKAEMLDEYLPAKGHRNINHIK 232
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ +++ +F A + ++ ++V + + + ++W
Sbjct: 233 NDNMDNQSFYSFLLATYQSAYEFMRAGAAIYVFHAESTGHIFRQAFLDAGLKLAQCLIWE 292
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY-DALKAANEDVQMRSDWLIPICSG 191
K+ + + +Q HE ++ A + + +D+ + + +
Sbjct: 293 KNAFVLG--RQDYQWRHEPCLYGWKEGAAHYFINDRTQDTVILEDDIDFSAMKKNELVAY 350
Query: 192 SERLRNKDG-------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
E LR K+ +HPT KP AL+ + + +S+K G +LD F GSG++
Sbjct: 351 LEELRRKNRDQTSVIYENKPTRNDIHPTMKPIALVGKFITNSSKSGWNVLDLFGGSGSTL 410
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
A++L R+ +E+ + + D+ KR + + K
Sbjct: 411 MAAEQLGRTAFIMELDERFCDVIVKRWEDYTGQQAVRIPAEDVK 454
>gi|307294546|ref|ZP_07574388.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
L-1]
gi|306879020|gb|EFN10238.1| DNA methylase N-4/N-6 domain protein [Sphingobium chlorophenolicum
L-1]
Length = 438
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/274 (21%), Positives = 103/274 (37%), Gaps = 16/274 (5%)
Query: 20 KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ L + + + +LI DPPY + G + + + S
Sbjct: 167 RHRLVVGDARDPLVYEKLMAGERAELIMTDPPYGCAIAGNVSGLGRVKHENFVMGAGETS 226
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E R + + ++ + + Q + + N IVW K+N
Sbjct: 227 LPEFAATILRPAFKLMAQHARSGAIAFICTDWRAAPHLLDAAQGVFHELKNLIVWAKTNA 286
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G +++AHE + SP E + RS+ + R
Sbjct: 287 GM---GTFYRSAHELIYAFKVSPGTHI------NNFGLGEGGRHRSNVWTYAGANVFRAG 337
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
H T KP+ +++ L+ ++ G IILDPF GSGT+ A+ R GIE+
Sbjct: 338 RLADLADHSTVKPKKMIADALLDCSRRGGIILDPFSGSGTTLVAAEMTGRRGFGIELDPK 397
Query: 257 YIDIATKRIASVQPLGNIE----LTVLTGKRTEP 286
Y D+ +R+A L+ + R EP
Sbjct: 398 YADVILRRVAEEAGAEPTLGGVPLSEIAAMRAEP 431
>gi|256847824|ref|ZP_05553269.1| DNA methylase [Lactobacillus coleohominis 101-4-CHN]
gi|256715513|gb|EEU30489.1| DNA methylase [Lactobacillus coleohominis 101-4-CHN]
Length = 408
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 35/258 (13%)
Query: 20 KDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++ G++ + L V+L+ DPPYN+ + + + + D +
Sbjct: 164 KHTLLCGDATKTESYQKLLGDHKVNLVLTDPPYNVDYSSKAGKIKN----------DHQA 213
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + + +++V + Q+ F++ +W+K +
Sbjct: 214 DDKFY-QFLLAAFQNMNQAMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K + YT ++ + R +
Sbjct: 273 VLGRSPYQWQHE-PVLYGWKKDGKHEWYTGRKESTIWEFD-----------------RPK 314
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL+ +++ST +LDPF GSG++ ++ R +E+
Sbjct: 315 QS---KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371
Query: 257 YIDIATKRIASVQPLGNI 274
Y D+ R
Sbjct: 372 YCDVIVNRYIKQVNSDQD 389
>gi|153951716|ref|YP_001398660.1| adenine-specific DNA methylase [Campylobacter jejuni subsp. doylei
269.97]
gi|152939162|gb|ABS43903.1| adenine-specific DNA methylase [Campylobacter jejuni subsp. doylei
269.97]
Length = 820
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/316 (16%), Positives = 109/316 (34%), Gaps = 72/316 (22%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
+S++N + E+ ++ E + +++K ++ L L +DLI+ DPP+N +
Sbjct: 355 LSEENYFKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFD 414
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
DKF + + L + L G+ ++ + +
Sbjct: 415 YK--------------DKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRI 459
Query: 117 MLQNLNFWILNDIVWRKSNPMP---------------------------------NFRGR 143
+L + + +N N +
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWK 519
Query: 144 RFQNA------------HETLIWASPSPKAKGYTFNYDALKAANEDVQMR--------SD 183
+N+ T+ + Y + K +E + ++
Sbjct: 520 PNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGKLCHEKIDIKDEKIYPLGDI 579
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
W +R + + +QKPE +L RI+ SS+ +++D F GSGT+ V+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHK 639
Query: 244 LRRSFIGIEMKQDYID 259
L R ++G+EM + + +
Sbjct: 640 LNRKYLGVEMGEHFYE 655
>gi|160935258|ref|ZP_02082641.1| hypothetical protein CLOBOL_00154 [Clostridium bolteae ATCC
BAA-613]
gi|158441989|gb|EDP19686.1| hypothetical protein CLOBOL_00154 [Clostridium bolteae ATCC
BAA-613]
Length = 236
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 12/245 (4%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV-DAVTDSWDKFSSFEAY 81
+ G+ + +L + KS+D+IF D PY NG D + + + +
Sbjct: 3 LFLGDCLDILPGIQDKSIDMIFTDLPYGTTRNGWDCVIDLKRLWEHYSRIIKNNGCIALW 62
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+LAC LK W+I + + N +++ K P N
Sbjct: 63 AQSPFDKVLAC-SNLKMYRYEWIIEKTKGTGHLNAAKMPMKCHE-NVLIFYKHLPTYNP- 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ H + + + + ++ ++R E
Sbjct: 120 --QITTGHSPVHSYTKHVSDGSNYGKTRTGISGGGSTERYPRDVLRFKWDTQR------E 171
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+LHPTQKP + + T GD +LD GS T+G ++L R +IGIE IA
Sbjct: 172 RLHPTQKPLEACKYFIRTYTNSGDTVLDSCMGSNTTGVACQELGRKYIGIEKDTVNYRIA 231
Query: 262 TKRIA 266
R+
Sbjct: 232 LDRVD 236
>gi|116630103|ref|YP_815275.1| ParB-like nuclease domain-containing protein [Lactobacillus gasseri
ATCC 33323]
gi|238854138|ref|ZP_04644485.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus gasseri 202-4]
gi|116095685|gb|ABJ60837.1| ParB-like nuclease domain and DNA modification methylase domain
[Lactobacillus gasseri ATCC 33323]
gi|238833214|gb|EEQ25504.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus gasseri 202-4]
Length = 408
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 97/276 (35%), Gaps = 35/276 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLY 58
S+ N ++ + + + G++ + L V+L+ DPPYN+ +
Sbjct: 146 SELNKPTFSKAGDLWHLGRHTLFCGDATKGEGYQKLLGDHKVNLVLTDPPYNVDYQSKAG 205
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + D + Y F A +V+ + +++V +
Sbjct: 206 KIKN----------DHQDDDKFY-QFLLAAFQNMNKVMANDASIYVFHADTEGLNFRRAF 254
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
++ +F++ +W+K + + ++ HE +++ + D
Sbjct: 255 RDADFYLSGCCIWKKQSLVLGRSPYQW--QHEPVLYGWKQDGKHEWYTGRKESTIWEFDR 312
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+S K HPT KP LL+ +++ST +LDPF GSG++
Sbjct: 313 PKQS-------------------KEHPTMKPVPLLAYPIMNSTMSNCTVLDPFGGSGSTL 353
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
++ R +E+ Y D+ R
Sbjct: 354 IACEQTNRICYMMELDPKYCDVIVNRYIEQVGSDQE 389
>gi|326626279|gb|EGE32623.1| putative adenine-specific DNA methylase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 226
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/252 (21%), Positives = 92/252 (36%), Gaps = 41/252 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I GN + ++ P ++VD I DPPY + R S+ TD W
Sbjct: 3 RLILGNCVDIMSGFPERAVDFILTDPPYLVGFRD---RSGRSIAGDRTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + L ++ + R ++ F ++ +V+ K+ +
Sbjct: 51 ---LQPACNQMYRVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 SAYVGYRHECAYVLAKGRPALPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T I+L PF GS ++ A + R +IGIE+ + Y
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHTNAIVLAPFAGSASTCVAALQAGRRYIGIELMEQYHKAE 201
Query: 262 TKRIASVQPLGN 273
+R+ +VQ
Sbjct: 202 IERLTAVQRAMQ 213
>gi|153817361|ref|ZP_01970028.1| haemagglutinin associated protein [Vibrio cholerae NCTC 8457]
gi|126512110|gb|EAZ74704.1| haemagglutinin associated protein [Vibrio cholerae NCTC 8457]
Length = 241
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/256 (20%), Positives = 92/256 (35%), Gaps = 37/256 (14%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN----GQLYRPDHSLVDAV 68
+ + KI + +++ L+ L SVDL DPPY G R S
Sbjct: 18 SSILGNLMSKIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSS-- 75
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
++ W ++ RVLK ++ +F + +++ F
Sbjct: 76 SNQWFSVFPNTRFEEL----FREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKP 131
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
IVW K + Y Y+ + + + +D +P
Sbjct: 132 IVWDKCAIGMGY----------------------HYRARYEFILFFEKGKRKLNDLSVPD 169
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+R+ K +PT+KP LL ++ S+ +I+ D FFGSG++ A L R +
Sbjct: 170 VLEYKRVW-----KGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKY 224
Query: 249 IGIEMKQDYIDIATKR 264
IG ++ + R
Sbjct: 225 IGCDISSSAHEYFKNR 240
>gi|78189066|ref|YP_379404.1| DNA modification methylase-like [Chlorobium chlorochromatii CaD3]
gi|78171265|gb|ABB28361.1| DNA modification methylase-like protein [Chlorobium chlorochromatii
CaD3]
Length = 413
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/287 (19%), Positives = 98/287 (34%), Gaps = 48/287 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ +L +SV LI PPY + + +E Y
Sbjct: 1 MNELQDESVHLIVTSPPYWQLKDY-----------GTENQIGFHDDYETYINHLNLTWQE 49
Query: 92 CRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPM 137
C RVL L + G Y I +++ F + I+W+K+ M
Sbjct: 50 CYRVLHKGCRLCINIGDQFARSTYYGRYKIIPIHSEIIKFCEIIGFDFMGQIIWQKTTTM 109
Query: 138 ------------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
PN R + E ++ + T ++ M ++
Sbjct: 110 NTSGGASIMGSYPNPRNGIVKLDFEYILLFKKQGTSPKPTKEQK------DNSVMTNEEW 163
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+G ++ H PE L RI+ + P + +LDPF GSGT+ A+ L
Sbjct: 164 NTYFNGHWYFSGAKQDQ-HLAMFPEELPRRIIKMFSFPNETVLDPFMGSGTTALAARNLN 222
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
R+ IG E+ +I I + + ++ + V T +P + +
Sbjct: 223 RNSIGYEINPTFI----PIIKNKIGMDDVFMKVETSVIKQPEITIDF 265
>gi|189345611|ref|YP_001942140.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
gi|189339758|gb|ACD89161.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
Length = 416
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/254 (20%), Positives = 81/254 (31%), Gaps = 30/254 (11%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ LP SV L+ PPY + + S+E+Y
Sbjct: 1 MNLLPDSSVHLVITSPPYWQLKDY-----------GTENQIGFHDSYESYINNLNLVWSE 49
Query: 92 CRRVLKPNGTLWVIGSYH-----NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
C RVL P L + R + + + ++
Sbjct: 50 CERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCETIGFDYMGAVIWQKVTTT 109
Query: 147 NAHETLIWASPSPKAKG------------YTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N P + + DA K A E + + +
Sbjct: 110 NTTGGASIMGSFPYPRNGILKLDYEFILLFKKPGDAPKPAKEQKERSAMSTEEWNTCFSG 169
Query: 195 LRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
N G K H PE L R++ G+ +LDPF GSGT+ AK L R+ +G E
Sbjct: 170 HWNFAGAKQDGHIAVFPEELPHRLIRMFAFSGETVLDPFMGSGTTSLAAKNLDRNSVGYE 229
Query: 253 MKQDYIDIATKRIA 266
+ ++I IA +++
Sbjct: 230 INPEFIGIAKEKLR 243
>gi|224436928|ref|ZP_03657909.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
gi|313143399|ref|ZP_07805592.1| modification methylase [Helicobacter cinaedi CCUG 18818]
gi|313128430|gb|EFR46047.1| modification methylase [Helicobacter cinaedi CCUG 18818]
Length = 267
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/285 (20%), Positives = 102/285 (35%), Gaps = 56/285 (19%)
Query: 15 SIFEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
S + + + + +++ SVDL+ PPY D
Sbjct: 8 STNNLLNNFYIDDCVHFMQKRMHDNSVDLVVTSPPY-----------------------D 44
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGS-----YHNIFRIGTMLQNLNFWI-L 126
++ Y+ + R++K G +WV+G ++ L
Sbjct: 45 NLRDYKGYNFEFESIANEIFRIVKKGGIVVWVVGDKIKNGNKSLTSFKQALYFQKIGFNA 104
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+D++ P R + N +E + S K TFN K A +M
Sbjct: 105 HDVMIYAKKNTPFMRSNAYTNGYEYMFIFSK---GKPKTFNPLKEKTARNGFEMLVANKK 161
Query: 187 PICSGSERLRNKDGEKL----------------------HPTQKPEALLSRILVSSTKPG 224
++ L+ EK HP PE L ++S + G
Sbjct: 162 SDGKNNKVLKELKQEKTKTNIWYYAVGLGGTTNDREAFKHPAMYPEQLALDHILSWSNEG 221
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
DI+ DP GSGT+ +A +R+FIG+++ +YI+IA KR+ +
Sbjct: 222 DIVFDPMCGSGTTCKMAFLAKRNFIGVDISWEYIEIAKKRLDKYK 266
>gi|85717646|ref|ZP_01048585.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85695538|gb|EAQ33457.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
Length = 454
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 16/282 (5%)
Query: 21 DKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G++ L +L S + F DPPYN+++ + R S + S
Sbjct: 180 HRLLCGDARDENQLVRLMNGSTAAMAFLDPPYNVRIRDVVGRG-RSKHSEFKMGVGELSD 238
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F R L A V +V + +I ++ ++ LN VW K+N
Sbjct: 239 -AEFVKFLRDSLGAVAAVSCDGAIHYVCMDWRHIGQLFEAGGSVYGASLNLAVWVKTNAG 297
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+G +++ HE + + + + RS+ + R
Sbjct: 298 ---QGSFYRSQHELIGIF------RVGRSQHLNNVELGRHGRSRSNVWKYAGVNTFRAGR 348
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
D K HPT KP AL++ + +T+ DI+LD F GSGTS A+++ R +E++ +
Sbjct: 349 LDDLKSHPTVKPVALVADAIKDATRRRDIVLDTFCGSGTSILAAERVGRRAYALELEPRF 408
Query: 258 IDIATKRIASVQPLGNIELTVLTGKR--TEPRVAFNLLVERG 297
+D+A +R I L +E + L E+G
Sbjct: 409 VDLAIRRWQEFTGRDAIHLDSGLTFHEMSERHSTLSDLPEKG 450
>gi|121596379|ref|YP_988275.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax sp.
JS42]
gi|120608459|gb|ABM44199.1| DNA methylase N-4/N-6 domain protein [Acidovorax sp. JS42]
Length = 545
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 69/327 (21%), Positives = 108/327 (33%), Gaps = 80/327 (24%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYN------------------------LQL 53
+ +I+G+++ L+ L V IF DPPYN LQL
Sbjct: 39 NLLIQGDNLEALKALLPFYRGKVKCIFIDPPYNTQSAFEHYDDNLEHSQWLSMMLPRLQL 98
Query: 54 NGQLYRPDHSLVDAVTDSWDKF-----------SSFEAYDAFTRAW----------LLAC 92
+L D S+ + D+ + +F A + +
Sbjct: 99 LRELLSEDGSIWVTIDDNEGHYLKVLMDEVFGRRNFIATVIWENFYGRSGTAAISPAHNY 158
Query: 93 RRVLKPNGTLWVIG-------------------SYHNIFRIGTML-----QNLNFWILND 128
P+G W +R+G + + +
Sbjct: 159 IHCYSPSGDAWKHIRGLLPRSEESTSKYKNPDNDPRGPWRLGPIFAPEERHEGLMYTVTT 218
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE---DVQMRSDWL 185
R+ +P R + ++ T N NE V RS W
Sbjct: 219 PSGRQVSPPKGSHWRMVEVDFWRMVEEGRISFGANGTNNPAVKLFLNEVQAGVVPRSIWP 278
Query: 186 IPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
++ + + GE T KPE LL RIL ++ PGD++LD F GSGT+ AV
Sbjct: 279 HSEAGHTQDAKREVMALFPGETPFGTPKPERLLQRILHIASNPGDLVLDSFLGSGTTAAV 338
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
A K+ R +IGIEM + R+
Sbjct: 339 AHKMGRRWIGIEMGEHAATHCLPRLQK 365
>gi|71279759|ref|YP_267259.1| hemagglutinin associated protein [Colwellia psychrerythraea 34H]
gi|71145499|gb|AAZ25972.1| haemagglutinin associated protein [Colwellia psychrerythraea 34H]
Length = 230
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/258 (22%), Positives = 105/258 (40%), Gaps = 38/258 (14%)
Query: 21 DKII-KGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKF 75
+ II + +++ L+ LP +S+DL+ DPPY + G R HS +++W +
Sbjct: 4 NFIISQSDAVDFLKSLPDESLDLVITDPPYESLEKHRKIGTTTRLKHSKSS--SNNWFEI 61
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
++ + R LK N +++ F + + ++ F IVW K
Sbjct: 62 FPNSRFEEL----FIEIYRTLKNNTHFYLLCDQETAFIVKPIAESCGFKFWKPIVWDKM- 116
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
Y Y+ + + + ++ IP R+
Sbjct: 117 ---------------------KIGMGYHYRARYEFILFFEKGKRKLNNLAIPDVLQVPRV 155
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ +PT+KP AL+ ++ ST+ G +I DPF GSG+ G A L R F G ++
Sbjct: 156 -----YRGYPTEKPVALMDILIEQSTEKGFLICDPFMGSGSVGVSALSLSRKFYGNDLSI 210
Query: 256 DYIDIATKRIASVQPLGN 273
D ++ RI +++ +
Sbjct: 211 DSLNHTIDRIKNIEETPD 228
>gi|319757806|gb|ADV69748.1| prophage LambdaW4, DNA methylase [Streptococcus suis JS14]
Length = 417
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 100/260 (38%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + L K V+L+ DPPYN + + + D
Sbjct: 171 KHRVICGDSTKAETYDQLLGDKKVNLVVTDPPYNCDVEKTAGKIQN----------DNMG 220
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F A ++ + +++V + ++ F++ +W+K++
Sbjct: 221 DSEFY-QFLLAMFTQVENHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + + D S
Sbjct: 280 VLGRSPYQW--RHEPVLYGWRQKGKHQWFSDRKQTTIWEYDRPKSS-------------- 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G ++LDPF GSG++ A + R GIE+ +
Sbjct: 324 -----KDHPTMKPIQLMAYPIQNSSMRGTLVLDPFLGSGSTLIAADQTGRICYGIELDEK 378
Query: 257 YIDIATKRIASVQPLGNIEL 276
++D+ KR ++ +
Sbjct: 379 FVDVIVKRYMEATDNTDVTV 398
>gi|259502595|ref|ZP_05745497.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus antri DSM 16041]
gi|259169410|gb|EEW53905.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus antri DSM 16041]
Length = 408
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 35/266 (13%)
Query: 20 KDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++ G++ + L V+L+ DPPYN+ + + + + D +
Sbjct: 164 KHTLLCGDATKTESYQKLLGDHKVNLVLTDPPYNVDYSSKAGKIKN----------DHQA 213
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + + +++V + Q+ F++ +W+K +
Sbjct: 214 DDKFY-QFLLAAFQNMNQAIANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K + YT ++ + R +
Sbjct: 273 VLGRSPYQWQHE-PVLYGWKKDGKHEWYTGRKESTIWEFD-----------------RPK 314
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL+ +++ST +LDPF GSG++ ++ R +E+
Sbjct: 315 QS---KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
Y D+ +R GK
Sbjct: 372 YCDVIVQRYIEQVGSSKNVSVERNGK 397
>gi|210134461|ref|YP_002300900.1| type II R-M system methyltransferase [Helicobacter pylori P12]
gi|210132429|gb|ACJ07420.1| type II R-M system methyltransferase [Helicobacter pylori P12]
Length = 252
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/249 (21%), Positives = 91/249 (36%), Gaps = 21/249 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G++ SVLE DL PPYNL + D F +++ Y
Sbjct: 12 LYHGDA-SVLETFEKGFYDLCVTSPPYNLSIEY----------QGSND----FRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-PNFR 141
+ + WL C K L + L + + W+ N + N
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAVAKECGWKYQNTIIWNES 116
Query: 142 GRRFQNAHETLIWASPSPKAKGY----TFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ A + + AS F + K + + + + +G
Sbjct: 117 NISRRTAWGSWLQASTPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWSFSG 176
Query: 198 KDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ + L HP P L R + + D I DPF GSGT+ A L R +G+E++++
Sbjct: 177 ESKKCLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKE 236
Query: 257 YIDIATKRI 265
Y +++ KRI
Sbjct: 237 YCELSKKRI 245
>gi|225573267|ref|ZP_03782022.1| hypothetical protein RUMHYD_01458 [Blautia hydrogenotrophica DSM
10507]
gi|225039399|gb|EEG49645.1| hypothetical protein RUMHYD_01458 [Blautia hydrogenotrophica DSM
10507]
Length = 417
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/279 (18%), Positives = 96/279 (34%), Gaps = 35/279 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ V + K +L+ DPPY + D +T D
Sbjct: 170 RHRLLCGDATRTEDVERLMDGKKANLVVTDPPYGVSFKSS---------DGLTIQNDSMK 220
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F L+ G+ +V + ++ F + +W K++
Sbjct: 221 DEEFY-TFLLTAFQCMAEHLENGGSAYVFHADTEGLNFRKAFIDIGFHLAGVCIWVKNSL 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +Q HE +++ + + N D
Sbjct: 280 VLG--RSDYQWQHEPVLFGWKKGGKHSWYSDRRQTTIWNYDKP----------------- 320
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL + +S++ I+LD F GSG++ ++L R +E+ +
Sbjct: 321 --KRNKNHPTSKPLDLLGYPICNSSQENAIVLDTFGGSGSTLMACEQLNRICHMMELDEK 378
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
Y + +R + V+ G P A VE
Sbjct: 379 YASVILRRY-VEDTGDKENVYVIRGDEQIPYSALVKEVE 416
>gi|310778844|ref|YP_003967177.1| DNA methylase N-4/N-6 domain protein [Ilyobacter polytropus DSM
2926]
gi|309748167|gb|ADO82829.1| DNA methylase N-4/N-6 domain protein [Ilyobacter polytropus DSM
2926]
Length = 418
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 32/248 (12%)
Query: 21 DKIIKGN--SISVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K++ G+ + ++ L + L+ DPPYN+ G S + + + D S
Sbjct: 169 HKLLCGDATNKDQVQLLMGEEKGQLVVTDPPYNVNYEG-------STKEKLKIANDNLSG 221
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y F L+ G ++V + + + F+ VW K++ +
Sbjct: 222 NEFYY-FLLGSYSRVYESLEDGGGIYVFHADTEGINFRKAMVDAGFYFAQCCVWVKNSLV 280
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + HE ++ KA + + D R+D
Sbjct: 281 MGRQDYHW--QHEPILVGWKPGKAHNWYSDRKQTTVWKFDRPSRND-------------- 324
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+HPT KP L++ + +S+KPGDI++D F GSG++ ++L R +E+ Y
Sbjct: 325 -----IHPTMKPLNLIAYPIENSSKPGDIVIDLFGGSGSTLMACQELERKCRTMEIDPRY 379
Query: 258 IDIATKRI 265
+D KR
Sbjct: 380 VDAIVKRY 387
>gi|46581282|ref|YP_012090.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450703|gb|AAS97350.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|311234947|gb|ADP87801.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris RCH1]
Length = 452
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 38/270 (14%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V+ + + D+++ DPPYN+ +G+ + + S
Sbjct: 166 HRLLCGDSTSVEDVVRLMAGEQADMLWTDPPYNVDYSGKAGKIRNDK-----------MS 214
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E +DAF L L +V S + L + + + +
Sbjct: 215 PEDFDAFLLRLLSRSYEALADGAAAYVAHSEAGGGTAFRKAFAHAGYKLASCLIWRKHQL 274
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNY-----------DALKAANEDVQMRSDWLI 186
RG HE +++ + N + A E V +
Sbjct: 275 VLGRGDYH-WQHEPILYGWKPTGKHRWYGNRKHTTLLEHFAGQTVLPAGEGVWQVATGDA 333
Query: 187 PICSGSERLRNKD------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + + ++ +LHPT KP AL+ R++ +S+ G ++LDP GS
Sbjct: 334 VLLIRGQDVTVEEVSTSILAVAKPARSELHPTMKPVALVERMVANSSPRGGLVLDPCGGS 393
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
GT+ +++ R +E+ + D+ +R
Sbjct: 394 GTTLIACERMGRRCNTMELDPRFADVIVRR 423
>gi|46578609|ref|YP_009417.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46448020|gb|AAS94676.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
vulgaris str. Hildenborough]
Length = 452
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 38/270 (14%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V+ + + D+++ DPPYN+ +G+ + + S
Sbjct: 166 HRLLCGDSTSVEDVVRLMAGEQADMLWTDPPYNVDYSGKAGKIRNDK-----------MS 214
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E +DAF L L +V S + L + + + +
Sbjct: 215 PEDFDAFLLRLLSRSYEALADGAAAYVAHSEAGGGTAFRKAFAHAGYKLASCLIWRKHQL 274
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNY-----------DALKAANEDVQMRSDWLI 186
RG HE +++ + N + A E V +
Sbjct: 275 VLGRGDYH-WQHEPILYGWKPTGKHRWYGNRKHTTLLEHFAGQTVLPAGEGVWQVATGDA 333
Query: 187 PICSGSERLRNKD------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + + ++ +LHPT KP AL+ R++ +S+ G ++LDP GS
Sbjct: 334 VLLIRGQDVTVEEVSTSILAVAKPARSELHPTMKPVALVERMVANSSPRGGLVLDPCGGS 393
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
GT+ +++ R +E+ + D+ +R
Sbjct: 394 GTTLIACERMGRRCNTMELDPRFADVIVRR 423
>gi|189036170|gb|ACD75435.1| AMDV4_6 [uncultured virus]
Length = 219
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 92/259 (35%), Gaps = 46/259 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ I +++ L ++ ++S+D I DPP YN + + + V++
Sbjct: 4 NTIENKDALEGLREMESESIDCIITDPPWPYNS---YNQFPNRNLTYNTVSN-------- 52
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
Y T R+LK +V + + + T L+ F ++ +
Sbjct: 53 -EYLEET---FKELYRILKKGKHAYVFTTNLRLGKDITTLEKCGFRYNQTLIL-----LA 103
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N + H L L E + + + G
Sbjct: 104 NGIKLGYGYRHTYLPI----------------LFLDKEGTSVTNLHDVSNVLGPSNFNVL 147
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
KP ++ L STK GDI+ DPF GSG++ K++ R+++G E+ ++
Sbjct: 148 S--------KPVEIIDTFLRQSTKEGDIVFDPFMGSGSTAIACKRIGRNYLGFEIDKERF 199
Query: 259 DIATKRIASVQPLGNIELT 277
+ RI ++E+
Sbjct: 200 ETTNIRIERTHVFDDMEVD 218
>gi|195546627|ref|YP_002117655.1| p097 [Rhizobium phage 16-3]
gi|102642580|gb|ABF71361.1| p097 [Rhizobium phage 16-3]
Length = 223
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/272 (22%), Positives = 90/272 (33%), Gaps = 63/272 (23%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + V+ L V + DPPY + + R H +D WD + EA
Sbjct: 10 TLYLGDCMDVMPTL--GRVPAVVTDPPYGIGIAANPVRQKHEKLD-----WDSSTPTEAV 62
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ L + G +Y N+ L N
Sbjct: 63 IDYI---LENSDEQIIWGG------NYFNLPPSQGFLIWDKKQPEN-------------- 99
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
F A + W S AK + R +
Sbjct: 100 ---FSLAMCEMAWISRKWPAKMF-----------------------------RQSVLSYD 127
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKP L+ + + ++LDPF GSGT+G K RSFIGIE + Y +IA
Sbjct: 128 KEHPTQKPVPLMQWC-LGYLQTTGVVLDPFMGSGTTGVACVKAGRSFIGIEREPSYFEIA 186
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
+RI Q ++ + + A L
Sbjct: 187 CERIRKAQAQPDMFIAANDNVPAATQFAVGNL 218
>gi|332983335|ref|YP_004464776.1| ParB domain-containing protein nuclease [Mahella australiensis 50-1
BON]
gi|332701013|gb|AEE97954.1| ParB domain protein nuclease [Mahella australiensis 50-1 BON]
Length = 417
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 28/265 (10%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V + + + +F DPP+N+ P + D+ S
Sbjct: 169 HRLMCGDSTMLSDVQKLMNGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MS 224
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E + AF + V + +V+ S + +++ + + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFKCMKEVSEAGCMTYVVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV 284
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + + Y + +D + W IP SE
Sbjct: 285 LSRK------------DYHTQYEPIWYGWLDGTRLCPLKDRKQSDVWEIPRPKVSEE--- 329
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP +L+++ +++S+ GD+ LD F GSGT+ A++ R +E+ Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSHIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDSKY 383
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
D+ KR S ++ L + K
Sbjct: 384 CDVIVKRYVSQFGADSVFLVTGSEK 408
>gi|15601210|ref|NP_232841.1| haemagglutinin associated protein [Vibrio cholerae O1 biovar eltor
str. N16961]
gi|121586498|ref|ZP_01676285.1| haemagglutinin associated protein [Vibrio cholerae 2740-80]
gi|121726174|ref|ZP_01679472.1| haemagglutinin associated protein [Vibrio cholerae V52]
gi|147672291|ref|YP_001215657.1| haemagglutinin associated protein [Vibrio cholerae O395]
gi|153820932|ref|ZP_01973599.1| haemagglutinin associated protein [Vibrio cholerae B33]
gi|227812021|ref|YP_002812031.1| DNA methylase N-4/N-6 [Vibrio cholerae M66-2]
gi|229506370|ref|ZP_04395879.1| hemagglutinin associated protein [Vibrio cholerae BX 330286]
gi|229509496|ref|ZP_04398978.1| hemagglutinin associated protein [Vibrio cholerae B33]
gi|229516666|ref|ZP_04406113.1| hemagglutinin associated protein [Vibrio cholerae RC9]
gi|229605937|ref|YP_002876641.1| hemagglutinin associated protein [Vibrio cholerae MJ-1236]
gi|254849623|ref|ZP_05238973.1| hemagglutinin associated protein [Vibrio cholerae MO10]
gi|297582334|ref|ZP_06944240.1| hemagglutinin associated protein [Vibrio cholerae RC385]
gi|298499247|ref|ZP_07009053.1| DNA methylase [Vibrio cholerae MAK 757]
gi|48357|emb|CAA45727.1| haemagglutinin associated protein [Vibrio cholerae]
gi|9657850|gb|AAF96353.1| haemagglutinin associated protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549323|gb|EAX59354.1| haemagglutinin associated protein [Vibrio cholerae 2740-80]
gi|121631393|gb|EAX63765.1| haemagglutinin associated protein [Vibrio cholerae V52]
gi|126521515|gb|EAZ78738.1| haemagglutinin associated protein [Vibrio cholerae B33]
gi|146314674|gb|ABQ19214.1| haemagglutinin associated protein [Vibrio cholerae O395]
gi|227011163|gb|ACP07374.1| DNA methylase N-4/N-6 [Vibrio cholerae M66-2]
gi|227015068|gb|ACP11277.1| DNA methylase N-4/N-6 [Vibrio cholerae O395]
gi|229346547|gb|EEO11518.1| hemagglutinin associated protein [Vibrio cholerae RC9]
gi|229353446|gb|EEO18384.1| hemagglutinin associated protein [Vibrio cholerae B33]
gi|229356721|gb|EEO21639.1| hemagglutinin associated protein [Vibrio cholerae BX 330286]
gi|229372423|gb|ACQ62845.1| hemagglutinin associated protein [Vibrio cholerae MJ-1236]
gi|254845328|gb|EET23742.1| hemagglutinin associated protein [Vibrio cholerae MO10]
gi|297533438|gb|EFH72293.1| hemagglutinin associated protein [Vibrio cholerae RC385]
gi|297541228|gb|EFH77279.1| DNA methylase [Vibrio cholerae MAK 757]
Length = 230
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 37/251 (14%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN----GQLYRPDHSLVDAVTDSWD 73
KI + +++ L+ L SVDL DPPY G R S ++ W
Sbjct: 12 NLMSKIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSS--SNQWF 69
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ RVLK ++ +F + +++ F IVW K
Sbjct: 70 SVFPNTRFEEL----FREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDK 125
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ Y Y+ + + + +D +P +
Sbjct: 126 CAIGMGY----------------------HYRARYEFILFFEKGKRKLNDLSVPDVLEYK 163
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R+ K +PT+KP LL ++ S+ +I+ D FFGSG++ A L R +IG ++
Sbjct: 164 RVW-----KGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKYIGCDI 218
Query: 254 KQDYIDIATKR 264
+ R
Sbjct: 219 SSSAHEYFKNR 229
>gi|308273683|emb|CBX30285.1| hypothetical protein N47_D30940 [uncultured Desulfobacterium sp.]
Length = 429
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/318 (16%), Positives = 95/318 (29%), Gaps = 50/318 (15%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
I +S ++ ++ KSV L+ PPY + R + ++E
Sbjct: 4 HTIYIADSR-IMSEVCDKSVHLVITSPPYWQLKDYDDIR-----------QIGFYDTYEE 51
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------------------IFRI 114
Y C RVLK L + +
Sbjct: 52 YINNLNLVWKECHRVLKEGCRLCINIGDQFARAAYYGRYKVIPIRTEIIKFCESAGFDYM 111
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
G ++ P R + +E ++ K
Sbjct: 112 GAIIWQKVTTCNTTGGASIMGSFPYPRNGILKIDYEFILLFKKPGDPPSV------EKEI 165
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
E ++ + +G + K H PE L R++ + +LDPF GS
Sbjct: 166 KEKAKLSTKEWNEYFAGHWIFPGEKQNK-HLAMFPEELPKRLIRMFCFEQETVLDPFSGS 224
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
GT+ AK L R IG E+ + Y+ + K++ + Q T + K +P+
Sbjct: 225 GTTSLAAKNLNRHSIGYEINESYLPVIKKKLGTEQV---DIFTDFSIKIKKPKRDIADYG 281
Query: 295 ERGLIQPGQILTNAQGNI 312
++ I + +
Sbjct: 282 QK--INQLPYIFCDKIKF 297
>gi|167760205|ref|ZP_02432332.1| hypothetical protein CLOSCI_02578 [Clostridium scindens ATCC 35704]
gi|167662088|gb|EDS06218.1| hypothetical protein CLOSCI_02578 [Clostridium scindens ATCC 35704]
Length = 250
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/256 (19%), Positives = 87/256 (33%), Gaps = 27/256 (10%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + ++ +P V LI DPPY + R H ++D D+ Y+ F
Sbjct: 2 DCMELMAHIPDNFVSLILTDPPYGIAYQNHFARQPHEILDG-----DQGID---YERFAW 53
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-PMPNFRGRRF 145
R+L+ N + + L+ F + N +V K +
Sbjct: 54 ----ESYRILRDNSHAYFFTRFDCYSFHYDCLRKAGFTVKNCLVVEKGTLGGIGDLKGSY 109
Query: 146 QNAHETLIWASPSPKAKGYTFNYDA-------LKAANEDVQMRSDWLIPICSGSERLR-- 196
N E +I+ + T + E + G E +
Sbjct: 110 ANNSEWIIFCQKGRRLFQQTQLLENRKKEGTQFHKGREPSKKYKTRFPACWFGEEYPKAT 169
Query: 197 -----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
K HPT K LS ++ S+ +++ D F G+G++ A R ++G
Sbjct: 170 YNATWQKKHGIYHPTVKNVEFLSWLIQISSTRKELVFDGFMGTGSTALAALANGRDYLGA 229
Query: 252 EMKQDYIDIATKRIAS 267
E+ + Y I KRI
Sbjct: 230 EINEAYFKITQKRIKE 245
>gi|332522901|ref|ZP_08399153.1| DNA (cytosine-5-)-methyltransferase [Streptococcus porcinus str.
Jelinkova 176]
gi|332314165|gb|EGJ27150.1| DNA (cytosine-5-)-methyltransferase [Streptococcus porcinus str.
Jelinkova 176]
Length = 418
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/260 (18%), Positives = 100/260 (38%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + L K +L+ DPPYN+ + + + D S
Sbjct: 171 KHRVICGDSTKAQTYDQLLGDKKANLVVTDPPYNVDVEETAGKILN----------DNMS 220
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F ++ + +++V + ++ F++ +W+K++
Sbjct: 221 DGDFY-QFLYDMFTQVESHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE ++ + + D S
Sbjct: 280 VLGRSPYQW--QHEPCLFGWRQKGRHQWFSDCKQTTIWEYDRPKSS-------------- 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G ++LDPF GSG++ A + R GIE+ +
Sbjct: 324 -----KDHPTMKPIQLMAYPIQNSSMRGTLVLDPFLGSGSTLMAADQTGRICYGIELDEK 378
Query: 257 YIDIATKRIASVQPLGNIEL 276
++D+ KR ++++
Sbjct: 379 FVDVIVKRYMEATGNSDVKV 398
>gi|298674310|ref|YP_003726060.1| DNA methylase N-4/N-6 domain-containing protein [Methanohalobium
evestigatum Z-7303]
gi|298287298|gb|ADI73264.1| DNA methylase N-4/N-6 domain protein [Methanohalobium evestigatum
Z-7303]
Length = 260
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 103/265 (38%), Gaps = 33/265 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
K+ + +++ ++ LP SVD+I DP Y N ++ R + + W F F
Sbjct: 17 KLYQDDALDFIKGLPENSVDIIVTDPAYSGMNQKMKFGNGRIVGEYKNENNNKW--FQEF 74
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ R +L C +VLK N ++++ +++ +G +L+ + + + M
Sbjct: 75 HDTEDNYRYFLSQCYKVLKDNSHIYIMFDSYSLLSLGNLLREYFNVKNIIVWDKVNMGM- 133
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
G F+ HE +I+A+ K D + +
Sbjct: 134 ---GHYFRRRHEFVIFATKGNKKLISRSIPDVWRF-----------------------KR 167
Query: 199 DGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K +PTQKP L +L S + DPF GSG+S A K +FIG + +
Sbjct: 168 IYNKCYPTQKPVELFEAMLAGSVDNENLTVCDPFVGSGSSAIAALKKNCNFIGNDTDEKA 227
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+ +++RI S N
Sbjct: 228 LKTSSERIDSFLKTENDIYQKKPSN 252
>gi|229149253|ref|ZP_04277492.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus m1550]
gi|228634225|gb|EEK90815.1| DNA methylase N-4/N-6 domain protein [Bacillus cereus m1550]
Length = 656
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 100/277 (36%), Gaps = 35/277 (12%)
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET-LIWASPSPKAKGYTFNYDA 170
+ +L++ +V+ P G R + + L +K
Sbjct: 238 YYDAPILRSNGMGERPHLVYEYKGFTPGPAGWRMKKSSLEKLDLEGNLGWSKTGKPFRKL 297
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+++ + S W S+ + +PTQKP LL RI+++S+KPGDI+ D
Sbjct: 298 RPESDKGKPVGSFWNDISLINSQ----AEERVGYPTQKPVKLLERIILASSKPGDIVFDC 353
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP---- 286
F GSGT+ A L R FIG ++ I TKR+ + + L TG+ T
Sbjct: 354 FMGSGTTQNAAMNLGRKFIGADINLGSIQTTTKRLINEVRKIDALLKADTGQMTFKNEFE 413
Query: 287 -----------------RVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT--- 326
N + + ++ IL + ++ G
Sbjct: 414 DEVTYNSISEYYTGFNVYNVNNYDIFKNPVEAKNILLEV---LEVQPLVSNSVFDGEKDG 470
Query: 327 ---ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHS 360
++ ++R+ K ++ ++ +EK + +
Sbjct: 471 AMVKIMPVNRITTKADLNDLITNIDYKMYEKRQQENP 507
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 21/156 (13%)
Query: 19 WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYN--------LQLNGQLYRPDHSLVDA 67
W +KI G+++ V+ L LI+ DPP++ + + G+ D S +
Sbjct: 54 WMNKIFWGDNLQVMSHLLKKYRGQFKLIYIDPPFDSKAQYKKSVSIKGKSAENDTSFFED 113
Query: 68 --VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW- 124
D W + + Y F L+ R +L +G++++ +H + ++ +
Sbjct: 114 TQYNDIW----ANDDYLQFMYERLILLRELLADDGSIYLHCDWHKSHHLRMIMDEIFGES 169
Query: 125 -ILNDIVWRKSNPMPNFRGRRFQNAHE--TLIWASP 157
N+I+W +S + +H T+ +
Sbjct: 170 NFRNEIIWVRSTNPKGSQHESRTFSHFTDTIFYYVK 205
>gi|291460777|ref|ZP_06600167.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sp. oral taxon
078 str. F0262]
gi|291416736|gb|EFE90455.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sp. oral taxon
078 str. F0262]
Length = 292
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 79/270 (29%), Gaps = 32/270 (11%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + +S L + SV LI PPY + + + ++
Sbjct: 4 NVLFHADSRD-LSFIKDGSVHLILTSPPYF----------NLKEYRRGDNQLGIINDYQQ 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ C RVL P G + + + R + + V + N
Sbjct: 53 FVDELEKVWKECYRVLVPGGRIVCVVGDVCLSRRKYGRHVVMPLHSDIAVSCRRIGFDNL 112
Query: 141 RGRRFQN-------AHETLIWASPSPKAKGYTFNYDALKAAN--------------EDVQ 179
+ A+ + N E +
Sbjct: 113 NPILWHKISNAAFEANTNSSILGKPYEPNAIIKNDMEYILMERKPGGYRKPTEQQREKSK 172
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ + + + HP P L +R++ + D++LDPF GSGT+
Sbjct: 173 IDKEDFQSWFTQIWEMPGASTRNGHPAPFPLELATRLVKMFSFVDDVVLDPFCGSGTTML 232
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
A RS +G+E ++ Y RI +
Sbjct: 233 AAINEGRSAVGVEAEEYYCRYTLDRIEKEK 262
>gi|256003547|ref|ZP_05428537.1| ParB domain protein nuclease [Clostridium thermocellum DSM 2360]
gi|255992571|gb|EEU02663.1| ParB domain protein nuclease [Clostridium thermocellum DSM 2360]
gi|316941388|gb|ADU75422.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
1313]
Length = 417
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 28/265 (10%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S +S ++KL +F DPP+N+ P + D S
Sbjct: 169 HRLMCGDSAMLSDVQKLMDGKKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDR----MS 224
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E + AF R V + +V+ S + L+ + + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFNCMREVSEAGCMTYVVMSAQEWGNVMNALREAGYHWSSTIIWKKDSLV 284
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + + Y + +D + W IP SE
Sbjct: 285 LSRK------------DYHTQYEPIWYGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE--- 329
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP +L+++ +++S++ GD+ LD F GSGT+ A++ R +E+ Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSRAGDLALDLFGGSGTTMIAAQQTGRVCFMMELDPKY 383
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
D+ KR S ++ L + K
Sbjct: 384 CDVIVKRYVSQFGADSVFLVTCSEK 408
>gi|124005746|ref|ZP_01690585.1| chromosome partitioning protein [Microscilla marina ATCC 23134]
gi|123988814|gb|EAY28420.1| chromosome partitioning protein [Microscilla marina ATCC 23134]
Length = 494
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/287 (17%), Positives = 96/287 (33%), Gaps = 18/287 (6%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNL--QLNGQL 57
++ + + + K ++I G+S+ E L S ++ DPPYN+ L G L
Sbjct: 203 EEAEVVVQKGDVYELNGKHRLICGDSLLAATFETLMNGSLARILITDPPYNIPYSLFGGL 262
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ H D + + F ++ + + + + + +
Sbjct: 263 GKVQHEDFSMAAGEMDD----QEFVEFLATYMRHAVQHTVDGSIHFHFMDFRHAWHMCEA 318
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ V + + G ++ HE +N
Sbjct: 319 GGKVYGSREPKQVCVWNKSI-QANGSFYRAKHEFCFIFKSGEAKHLSHLELKDRFRSN-- 375
Query: 178 VQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
D+ +E + + HPT KP +++ L+ +T GDI+LD F GS
Sbjct: 376 ---VWDYKSANDFSNEERKEFGKLGALENHPTPKPVRMIADALLDTTNEGDIVLDCFLGS 432
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
GT+ A++ RR G+E + Y+ R N +
Sbjct: 433 GTTLMAAERTRRICYGVEYEPGYMQGILTRFIHHCQTENKPFEITRN 479
>gi|315616913|gb|EFU97529.1| DNA methylase family protein [Escherichia coli 3431]
Length = 215
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 41/243 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ P +VD I DPPY + D + + + D + +
Sbjct: 1 MATFPGNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKTDEWLQPACNE 45
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RVLK + + ++ + R +N F ++ +V+ K+ + HE
Sbjct: 46 MYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSKAAYVGYRHEC 102
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ A D L G + HPT+KP
Sbjct: 103 AYILAKGRPALPQKPLPDVLGW-----------------------KYSGNRHHPTEKPVT 139
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y +R+ +VQ
Sbjct: 140 SLQPLIESFTHPNAIVLDPFAGSGSTCIAALQSGRRYIGIELLEQYHRAGQQRLTAVQRA 199
Query: 272 GNI 274
Sbjct: 200 MQQ 202
>gi|226311531|ref|YP_002771425.1| hypothetical protein BBR47_19440 [Brevibacillus brevis NBRC 100599]
gi|226094479|dbj|BAH42921.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 431
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/267 (17%), Positives = 104/267 (38%), Gaps = 11/267 (4%)
Query: 20 KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++ G++ +++L L+ DPPYN+ +++ +
Sbjct: 173 RHILMCGDATSEQDVKRLMDGQRAALVVTDPPYNVAFKSDSAELASDGRESIMNDDMPME 232
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
FE F +A ++ P ++V + +W K+
Sbjct: 233 QFED---FLQAVFANYASIMDPKAAIYVFLPSSYQREFENKMNEAGIVSRTQCIWVKNAF 289
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+F +++ HE + +A +A + +Y + + + E R
Sbjct: 290 SLSFA--QYKFKHEPVFYAHLKGQAPAWYGDYKQTTVWKSGLPSFIEEPETVW---EVSR 344
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ +HPTQKP LL+ + +S+K D++ D F GSG++ +++ R +E+
Sbjct: 345 GDVSKYVHPTQKPLELLAIPIGNSSKKDDVVADFFGGSGSTLMTCEQMGRICRTMELDPK 404
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
+ D+ +R V + + LT + ++
Sbjct: 405 FCDVIKRRYYEVTGIEPVLLTRQSARK 431
>gi|57234145|ref|YP_181807.1| DNA methylase [Dehalococcoides ethenogenes 195]
gi|57224593|gb|AAW39650.1| DNA methylase [Dehalococcoides ethenogenes 195]
Length = 421
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/267 (17%), Positives = 90/267 (33%), Gaps = 34/267 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ V + + K +LI DPPY + D +T D
Sbjct: 168 RHRLMCGDATSPEDVEKLMDGKKANLILTDPPYGVSFK---------ASDGLTIQNDSLK 218
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F A L+ G + + + F + +W K++
Sbjct: 219 GEEFY-KFLLAAFKNMADHLEKGGAAYCFHADTEGLTFRKAFIDAGFHLAGVCIWVKNSL 277
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +Q HE +++ + + N D
Sbjct: 278 VLG--RSDYQWQHEPVLYGFLQNGKHPWYSDRKQTTIWNYDKP----------------- 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL + +S++ +++D F GSG++ ++L R +E+
Sbjct: 319 --KRNKDHPTSKPLDLLGYPIKNSSQENSVVIDTFGGSGSTLMACEQLNRICCMMELDPK 376
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
Y + +R V G++
Sbjct: 377 YASVILRRYVEDTGDTENVYVVRNGEK 403
>gi|15674743|ref|NP_268917.1| phage associated protein [Streptococcus phage 370.1]
gi|94992071|ref|YP_600170.1| chromosome partitioning protein parB / adenine-specific
methyltransferase [Streptococcus phage 2096.1]
gi|13621867|gb|AAK33638.1| conserved hypothetical protein, phage associated [Streptococcus
phage 370.1]
gi|94545579|gb|ABF35626.1| Chromosome partitioning protein parB / Adenine-specific
methyltransferase [Streptococcus phage 2096.1]
Length = 388
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 89/247 (36%), Gaps = 32/247 (12%)
Query: 21 DKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K++ G+S + ++KL DL+ DPPYN+ G+ D++ +
Sbjct: 158 HKLMCGDSTNGADVKKLMNGELADLLLTDPPYNVAYEGKTKDSLTIKNDSMDND------ 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + V+KP ++ + + ++ + + ++W K++ +
Sbjct: 212 --SFRQFLVNAFSSANEVMKPGAVFYIWHADSEGYNFRGACFDIGWTVRQCLIWNKNSMV 269
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y + A D + S
Sbjct: 270 LGR------------QDYHWKHEPCLYGWKDGAGHLWASDRKQTSVIDYEKPQR------ 311
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+HPT KP L + ++TK DI+LD F GSGT+ + R +E Y
Sbjct: 312 ---NGVHPTMKPVGLFDYQIKNNTKGSDIVLDLFGGSGTTLIACESNGRHARLMEYDPKY 368
Query: 258 IDIATKR 264
+D+ KR
Sbjct: 369 VDVIIKR 375
>gi|313575369|emb|CBR26898.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
Length = 442
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 99/260 (38%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + L K +L+ DPPYN+ + + + D
Sbjct: 195 KHRVICGDSTKAEIYDQLLGDKKANLVVTDPPYNVDVEETAGKILN----------DNMP 244
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F + ++ + +++V + ++ F++ +W+K++
Sbjct: 245 DSEFY-QFLFDMFTQVEKHIESDASIYVFHADTEGLNFRKAFKDAGFYLSGCCIWKKNSL 303
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE ++ + + D S
Sbjct: 304 VLGRSPYQW--QHEPCLFGWKQKGKHQWFSDRKQTTIWEYDRPKSS-------------- 347
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G I+LDPF GSG++ A + R GIE+ +
Sbjct: 348 -----KDHPTMKPIPLMAYPIQNSSMRGTIVLDPFLGSGSTLIAADQTGRVCYGIELDEK 402
Query: 257 YIDIATKRIASVQPLGNIEL 276
++D+ KR N+ +
Sbjct: 403 FVDVIVKRYIESTGNDNVTV 422
>gi|227530252|ref|ZP_03960301.1| ParB family nuclease domain and DNA-modification methylase domain
protein [Lactobacillus vaginalis ATCC 49540]
gi|227349825|gb|EEJ40116.1| ParB family nuclease domain and DNA-modification methylase domain
protein [Lactobacillus vaginalis ATCC 49540]
Length = 417
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 35/266 (13%)
Query: 20 KDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++ G++ + L V+L+ DPPYN+ + + + + D +
Sbjct: 164 KHTLLCGDAAKTESYQKLLGDHKVNLVLTDPPYNVDYSSKAGKIKN----------DHQA 213
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + + +++V + Q+ F++ +W+K +
Sbjct: 214 DDKFY-QFLLAAFQNMNQAMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L K + YT ++ + R +
Sbjct: 273 VLGRSPYQWQHE-PVLYGWKKDGKHEWYTGRKESTIWEFD-----------------RPK 314
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL+ +++ST +LDPF GSG++ ++ R +E+
Sbjct: 315 QS---KEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPK 371
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
Y D+ +R GK
Sbjct: 372 YCDVIVQRYIEQVGSSKNVSVERNGK 397
>gi|125974144|ref|YP_001038054.1| ParB-like nuclease [Clostridium thermocellum ATCC 27405]
gi|125714369|gb|ABN52861.1| ParB-like nuclease [Clostridium thermocellum ATCC 27405]
Length = 417
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 28/265 (10%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V + + + +F DPP+N+ P + D+ S
Sbjct: 169 HRLMCGDSTMLSDVQKLMNGQKARFVFTDPPWNVDYGSDTRHPSWKPRQILNDN----MS 224
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E + AF + V + +++ S + +++ + + I+W+K + +
Sbjct: 225 TEEFGAFLLRAFKCMKEVSEAGCMTYIVMSAQEWGSLMNVMREAGYHWSSTIIWKKDSLV 284
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + + Y + +D + W IP SE
Sbjct: 285 LSRK------------DYHTQYEPIWYGWLEGTRLCPLKDRKQSDVWEIPRPKVSEE--- 329
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP +L+++ +++S+ GD+ LD F GSGT+ A++ R +E+ Y
Sbjct: 330 ------HPTMKPVSLVAKAMLNSSHIGDLTLDLFGGSGTTMIAAQQTGRVCFMMELDPKY 383
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
D+ KR S ++ L + K
Sbjct: 384 CDVIVKRYVSQFGADSVFLVTGSEK 408
>gi|225375476|ref|ZP_03752697.1| hypothetical protein ROSEINA2194_01101 [Roseburia inulinivorans DSM
16841]
gi|257439458|ref|ZP_05615213.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
gi|225212673|gb|EEG95027.1| hypothetical protein ROSEINA2194_01101 [Roseburia inulinivorans DSM
16841]
gi|257198117|gb|EEU96401.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
Length = 264
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/257 (21%), Positives = 85/257 (33%), Gaps = 39/257 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I L LP SVD++ DPPY N WD
Sbjct: 21 LFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRNF----------------WDVPLPL---- 60
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP--NF 140
A + +KP+G + + + + + VW KS N
Sbjct: 61 ---PELWEAVKWAVKPDGAVLFFA---QCPYDKVLGASNLSMLRYEWVWYKSRCTGFLNA 114
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMRSDWLIPICSGSERLRNK 198
R + L++ P K + D + SGSE
Sbjct: 115 RRAPLKRTENILVFYQKLPYYDPQFEQGKPYKKISRTGDNSPNYGKFLRSSSGSEDGLRF 174
Query: 199 DGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G +HPTQKP L ++ + T+PG+++ D GSGT+ A R F+
Sbjct: 175 PGNLLAFSSVQRTVHPTQKPVELCEYLIRTYTRPGEVVADICAGSGTTAVAAVNTGRRFV 234
Query: 250 GIEMKQDYIDIATKRIA 266
E + AT+RI
Sbjct: 235 CFETAPAFYAPATERIR 251
>gi|113707431|gb|ABI36611.1| M2.NcuI DNA methyltransferase [Moraxella cuniculi]
Length = 278
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/275 (21%), Positives = 102/275 (37%), Gaps = 30/275 (10%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ + +S + ++++P SV I PPY N++ + +S + T +
Sbjct: 1 MNTVFFKDSRN-MKEVPNNSVHPIITSPPYFNIKDYAKDGYQQNSHSNKHTSQIGDIDDY 59
Query: 79 EAYDAFTRAWLLACRRVLKPNG------------------TLWVIGSYHNIFRIGTMLQN 120
E Y C RVL PNG N T+L+N
Sbjct: 60 ENYLIEMLQVWRECERVLTPNGKLVINTPLMPMLKKDMNTHYTRHIFDLNSDIQQTILKN 119
Query: 121 LNFWILNDIVWRKSNP--------MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
N ++++ +W ++N P R QN E + K +
Sbjct: 120 TNLFLMDTYLWNRTNSSKKLMFGSYPYPRNFYAQNTTEFVTIYVKDGKPNKVSDEIKEKS 179
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
+ + + I +N +H PE + R++ + GD +LDPF
Sbjct: 180 KLTQQEWVE--FTKQIWDIPIPNKNDLAFGVHSAIMPEEIPRRLIKLYSFYGDTVLDPFA 237
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSGT+ VAK+L R +IG E+ + Y +I ++
Sbjct: 238 GSGTTLKVAKELGRKYIGFELMEKYSEIIDLKLRD 272
>gi|198276338|ref|ZP_03208869.1| hypothetical protein BACPLE_02533 [Bacteroides plebeius DSM 17135]
gi|198270780|gb|EDY95050.1| hypothetical protein BACPLE_02533 [Bacteroides plebeius DSM 17135]
Length = 254
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 89/266 (33%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + + WDK F
Sbjct: 11 TLYKADCLEVMPFLPESSIDLVLCDPPFGITAS----------------QWDKIIPFPEM 54
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
RRV K N + GS + D VW KS
Sbjct: 55 -------WKEIRRVRKENAPTVLFGSEPFSSLLR---CGNLEEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + RN++
Sbjct: 105 AKKQPLKAHELISVFGK--GRTPYYPIMEEGEPYGNRTKRGSNWTGIGKVPNPTFRNENR 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + + KR+ +
Sbjct: 223 YTHRKCICIEKDETHFSQGEKRVRNE 248
>gi|316997329|dbj|BAJ52776.1| adenine-specific DNA methylase [Campylobacter lari]
Length = 670
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/316 (17%), Positives = 110/316 (34%), Gaps = 72/316 (22%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
+S++N + ++ ++ E + +++K ++ L L +DLI+ DPP+N +
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFD 414
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
DKF + + L + L G+ ++ + +
Sbjct: 415 YK--------------DKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRI 459
Query: 117 MLQNLNFWILNDIVWRKSNPMP---------------------------------NFRGR 143
+L + + +N N +
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKANSIFNKLWK 519
Query: 144 RFQNA------------HETLIWASPSPKAKGYTFNYDALKAANEDVQMR--------SD 183
+N+ T+ + Y + K +E + ++
Sbjct: 520 PNRNSSLLDLGQLDLIGISTIEAPKKITDYEYYIQKWKNGKLCHEKIDIKDEKIYPLGDI 579
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
W +R + + +QKPE +L RI+ SS+ +++D F GSGT+ AV+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLAVSHK 639
Query: 244 LRRSFIGIEMKQDYID 259
L R +IGIEM + + +
Sbjct: 640 LNRKYIGIEMGEHFYE 655
>gi|316997315|dbj|BAJ52764.1| type II DNA modification enzyme [Campylobacter lari]
Length = 669
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/316 (17%), Positives = 110/316 (34%), Gaps = 72/316 (22%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
+S++N + ++ ++ E + +++K ++ L L +DLI+ DPP+N +
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFD 414
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
DKF + + L + L G+ ++ + +
Sbjct: 415 YK--------------DKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRI 459
Query: 117 MLQNLNFWILNDIVWRKSNPMP---------------------------------NFRGR 143
+L + + +N N +
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKANSIFNKLWK 519
Query: 144 RFQNA------------HETLIWASPSPKAKGYTFNYDALKAANEDVQMR--------SD 183
+N+ T+ + Y + K +E + ++
Sbjct: 520 PNRNSSLLDLGQLDLIGISTIEAPKKITDYEYYIQKWKNGKLCHEKIDIKDEKIYPLGDI 579
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
W +R + + +QKPE +L RI+ SS+ +++D F GSGT+ AV+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLAVSHK 639
Query: 244 LRRSFIGIEMKQDYID 259
L R +IGIEM + + +
Sbjct: 640 LNRKYIGIEMGEHFYE 655
>gi|295091780|emb|CBK77887.1| DNA modification methylase [Clostridium cf. saccharolyticum K10]
Length = 303
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/258 (18%), Positives = 81/258 (31%), Gaps = 35/258 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I L LP SVD++ DPPY N WD +
Sbjct: 60 LFLMDGIEGLRSLPRHSVDMLLTDPPYGTTRNY----------------WDVPLPLIEFW 103
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A R +KP+G + + S ++ + N
Sbjct: 104 E-------AVRWAVKPDGAVLLF-SQCPYDKVLGASNLAMLRYEWIWYKERGTGFLNANR 155
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG-- 200
+ + L++ P + + + ++ G+E +
Sbjct: 156 APLKKSENILVFYQKPPVYNPQFTYGEPYRKTHARSGSSPNYGKFERVGTESSDGRRYPS 215
Query: 201 ---------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+HPTQKP L ++ + T G+++ D GSGT+ A R FI
Sbjct: 216 NVLFVPTVSHTIHPTQKPVELCEYLIQTYTNEGEVVADICAGSGTTAVAALNTGRRFICF 275
Query: 252 EMKQDYIDIATKRIASVQ 269
E + A +RI +
Sbjct: 276 ENAPVFYGPAVERIEQAR 293
>gi|327398792|ref|YP_004339661.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
DSM 10411]
gi|327181421|gb|AEA33602.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
Length = 246
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 31/251 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + +L +P +S+DLI DPPY + N + V D+ SSF
Sbjct: 21 LYNADCLELLPCIPQESIDLILTDPPYGVGSNERNGINYKDEFYNV----DEVSSF---- 72
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
LK N +V + + +N F++ ++W K N G
Sbjct: 73 ---------LYGSLKDNSRAYVFTAQKTFIDVAKWFENNGFYLHQTLIWYKK----NLAG 119
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
+ ++ + ++ ++ ++
Sbjct: 120 GTKKRTYDFTSTYEQILNFHKGKPHLLKKDHLSDVLEFPQPQSNYTLD----------KR 169
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H QKP L+ ++ ST DI+ DPF GSGT+ A A++L R ++ IE++ +Y IA
Sbjct: 170 YHIHQKPLKLIEYLIYVSTNENDIVFDPFAGSGTTAAAAERLGRRWVAIEIQPEYCQIAK 229
Query: 263 KRIASVQPLGN 273
+RI +
Sbjct: 230 ERIRRFASIKP 240
>gi|75675042|ref|YP_317463.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
gi|74419912|gb|ABA04111.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
Length = 252
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/269 (24%), Positives = 97/269 (36%), Gaps = 46/269 (17%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I G+ ++ DLI ADPPY + A+D
Sbjct: 8 VITGDCRVLMPA--QGPFDLILADPPY-------------------------GDTSLAWD 40
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
WL LKP+G+LWV GS + + + +IVW K N +F
Sbjct: 41 RRVDGWLQLACAALKPSGSLWVFGSLRSFMATADQFADADLRYAQEIVWEKQNGT-SFHA 99
Query: 143 RRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW------LIPICSG 191
RF+ HE + + +N DA G
Sbjct: 100 DRFKRVHELVAQFYRADVPWSAVYNDVQTTPDATARTVRRKMPPPHTGRIDAGHYVSEDG 159
Query: 192 SERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
RL RN G +HPT+KP L+ ++ +S G ++ D F GSG +G +
Sbjct: 160 GPRLMRSVIYARNCHGTAIHPTEKPSGLIEILIRTSCPQGGLVGDWFVGSGAAGEACRLA 219
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R ++G E+ ++A RI SV P
Sbjct: 220 GRRYVGCEIDAGMAELARGRITSVLPFIE 248
>gi|153010509|ref|YP_001371723.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|151562397|gb|ABS15894.1| DNA methylase N-4/N-6 domain protein [Ochrobactrum anthropi ATCC
49188]
Length = 247
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 71/271 (26%), Positives = 103/271 (38%), Gaps = 48/271 (17%)
Query: 22 KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
I+ G+ + P D+I ADPPY + A
Sbjct: 2 TILTGDCREEMPWHAP---YDMIIADPPY-------------------------GDTSLA 33
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+D W++ R L+P G+LWV GS + + I +IVW K N F
Sbjct: 34 WDRRVEGWVVLARAALRPTGSLWVFGSLRSFMATADRFTDAGLRIAQEIVWEKQNGT-GF 92
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW------LIPIC 189
RF+ HE + P+ A +N DA Q
Sbjct: 93 HADRFKRVHELAVQFYPAETAWRDIYNDVQTTPDATARTVRRKQRPPHTGQIDAGHYVSH 152
Query: 190 SGSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G RL RN G +HPT+KP ALL ++ +S G ++ D F GSG +G +
Sbjct: 153 DGGPRLMRSVIYLRNCHGRAIHPTEKPSALLEILIRTSCPEGGLVGDWFAGSGAAGEACR 212
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R ++G E+ D + A RIA+V P +
Sbjct: 213 LSGRRYLGCEIDPDMAECARARIATVLPFHD 243
>gi|311977223|gb|ADQ20484.1| M2.BfaI [Bacteroides fragilis]
Length = 461
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 56/324 (17%), Positives = 97/324 (29%), Gaps = 54/324 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
I G+S + + +SV LI PPY + S+E
Sbjct: 5 HLFINGDSRK-MSLVSNESVQLIVTSPPYWQLKDY-----------GSDKQIGFNDSYEE 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------------------------IFRI 114
Y C RVL+P L + +
Sbjct: 53 YINNLNLVWNECFRVLEPGCRLCINIGDQFARSVYYSRYKVIPIHSEIIRFCEEVGFDYM 112
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
G+++ + + P RG + E ++ KA +
Sbjct: 113 GSIVWQKPTSMHTTGGEKIMGSFPYPRGGIVKIDFEHILLFKKIGKATPISREKKEASKF 172
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + G R + H PE L R++ + GD +LDPF GS
Sbjct: 173 TIEEWNE-YFSSHWTFGGAR------QDKHIAVFPEELPKRLIRMFSFVGDTVLDPFMGS 225
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT---------E 285
GT+ VA+ L R+ IG E+ ++++ +++ G+ T
Sbjct: 226 GTTALVARNLNRNSIGYEINKNFLQFYKEKVVLSNGNGDTVFDAKEDHSTIDLQCALDNL 285
Query: 286 PRVAFNLLVERGLIQPGQILTNAQ 309
P ++ LI Q + +
Sbjct: 286 PYRFVDVHKLDKLIDVKQNIYGNK 309
>gi|240013323|ref|ZP_04720236.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
DGI18]
gi|240120394|ref|ZP_04733356.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
PID24-1]
gi|240127400|ref|ZP_04740061.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
SK-93-1035]
gi|268685774|ref|ZP_06152636.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268626058|gb|EEZ58458.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 161
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IFADPPY L +G + +V +WDK
Sbjct: 28 LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 86
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 87 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 146
Query: 139 NFRGRRFQNAHETL 152
N R F ++ ET+
Sbjct: 147 NLSCRFFTHSTETI 160
>gi|38638617|ref|NP_944318.1| gp10 [Burkholderia phage Bcep1]
gi|34485999|gb|AAQ73356.1| gp10 [Burkholderia phage Bcep1]
Length = 233
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 40/258 (15%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
G+ + + +LPA+SVDL+ D PY + WD
Sbjct: 3 GDCLLAMHELPAQSVDLVLCDLPYGT----------------TRNRWDTPLDLS------ 40
Query: 86 RAWLLACRRV-LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
L R KP + + +G + + + +W K+N +R
Sbjct: 41 --RLWVAYRHVCKPGAPVLLFAQTPFDKVLGA---SNLPELRYEWIWEKTNATGFLNAKR 95
Query: 145 FQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC---SGSERLR---- 196
AHE ++ ++ + + S++ +ER
Sbjct: 96 APLKAHENILVFCDRAPTYRPIKTSGHVRKTSTRLGYSSNYGAQAVSSYDSTERYPRSVL 155
Query: 197 ----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+K KLHPTQKP ALL ++ + PG ++LD G ++ A + +FIGIE
Sbjct: 156 RFASDKQRSKLHPTQKPVALLEYLIRTHAAPGAVVLDNCMGCASTALAAMQAGCAFIGIE 215
Query: 253 MKQDYIDIATKRIASVQP 270
++ + A +R+ QP
Sbjct: 216 NDVEHFETAQRRVRDYQP 233
>gi|325130370|gb|EGC53136.1| putative type III restriction-modification system methyltransferase
[Neisseria meningitidis OX99.30304]
Length = 666
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 20/209 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 137 NLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDE 196
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 197 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 256
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
V + P + F N H+ ++ + + +
Sbjct: 257 FGEGNFVANVIWQKKYSPQNDAKWFSNMHDYILCVAKNKDIWRPNLLERTEEQNARYSNP 316
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D + ++ +P P
Sbjct: 317 DNDERGNWKATDFSVKTYSENYDYPITTP 345
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------- 245
+ +R+ T KP LL+ ++ S+ DI++D F GSGT+ +L
Sbjct: 416 KNIRDLFDIPPFETPKPVRLLNYLIKLSSNSDDIVMDFFAGSGTTAHAVMQLNAEEQNGS 475
Query: 246 RSFIGIEM 253
R +I +++
Sbjct: 476 RRYICVQL 483
>gi|149882909|ref|YP_001294846.1| DNA methylase [Burkholderia phage BcepNY3]
gi|148763560|gb|ABR10543.1| DNA methylase [Burkholderia phage BcepNY3]
Length = 243
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 42/269 (15%)
Query: 16 IFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ E ++ ++ G+ + + +LPA+SVDL+ D PY + WD
Sbjct: 1 MSEIANRCELMFGDCLLAMHELPAQSVDLVLCDLPYGT----------------TRNRWD 44
Query: 74 KFSSFEAYDAFTRAWLLACRRV-LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
L R KP + + +G + + + +W
Sbjct: 45 TPLDLS--------RLWVAYRHVCKPGAPVLLFAQTPFDKVLGA---SNLPELRYEWIWE 93
Query: 133 KSNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC-- 189
K+N +R AHE ++ ++ + + S++
Sbjct: 94 KTNATGFLNAKRAPLKAHENILVFCDRAPTYRPIKTSGHVRKTSTRLGYSSNYGAQAVSS 153
Query: 190 -SGSERLR--------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ER +K KLHPTQKP ALL ++ + PG ++LD G ++
Sbjct: 154 YDSTERYPRSVLRFASDKQRSKLHPTQKPVALLEYLIRTHAAPGAVVLDNCMGCASTALA 213
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
A + +FIGIE ++ + A +R+ +
Sbjct: 214 AMQAGCAFIGIENDVEHFETAQRRVRDYR 242
>gi|228969725|ref|ZP_04130502.1| DNA methylase N-4/N-6 domain protein [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228789984|gb|EEM37789.1| DNA methylase N-4/N-6 domain protein [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 241
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/256 (19%), Positives = 90/256 (35%), Gaps = 37/256 (14%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + ++ +P KSVD+I D PY + WD+ FE
Sbjct: 2 DCLEGMKMIPDKSVDMILCDLPYGT----------------TSCRWDEIIPFE------- 38
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
RV+K NG + + S ++ L + + + PN +
Sbjct: 39 PLWEQYERVIKDNGAILLTASQPFTTKLIASNIKLFRYEWIWKKGKHTTGFPNANRMPLK 98
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG------ 200
N L++ PK ++++ + +L K
Sbjct: 99 NHENVLVFYKKLPKYYPQDLILLDKPIQKKEIKRMKIFGKRNNESLNKLHVKKYTNYPKS 158
Query: 201 --------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ HPTQKP AL ++ + TK G+ +LD GS T+ R++IG E
Sbjct: 159 IIDFPRESKTFHPTQKPVALFEYLIKTYTKEGETVLDNCMGSFTTAIACINTNRNYIGFE 218
Query: 253 MKQDYIDIATKRIASV 268
M ++Y + +R+
Sbjct: 219 MDEEYWKLGNERVERH 234
>gi|291562208|emb|CBL41024.1| DNA modification methylase [butyrate-producing bacterium SS3/4]
Length = 259
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/263 (19%), Positives = 86/263 (32%), Gaps = 35/263 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I L LP SVD++ DPPY N WD
Sbjct: 16 LFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRNY----------------WDVPLPL---- 55
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A + +KPNG + + + ++ + N
Sbjct: 56 ---PELWEAVKWAVKPNGAV-LFFAQCPFDKVLGASNLAMLRYEWIWYKERGTGFLNANR 111
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE--RLRNKDG 200
+ + L++ SP + S++ GSE R G
Sbjct: 112 APLKKSENILVFYKKSPVYNPQFTYGKPYARVHSRSGTSSNYGKFERQGSESNDGRRYPG 171
Query: 201 EK---------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+HPTQKP L ++ + T PG+++ D GSGT+ A R F+
Sbjct: 172 NVLFVPTVSGGIHPTQKPVELCEYLIRTYTHPGELVADICVGSGTTAIAAINTERRFVCF 231
Query: 252 EMKQDYIDIATKRIASVQPLGNI 274
E + A++RI + Q + +
Sbjct: 232 ETAPSFYAAASERIRAAQAVKSS 254
>gi|224369435|ref|YP_002603599.1| MthZ [Desulfobacterium autotrophicum HRM2]
gi|223692152|gb|ACN15435.1| MthZ [Desulfobacterium autotrophicum HRM2]
Length = 360
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 28/286 (9%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ ++ +S + + + SV+L+ PPY + ++ L+ ++ + A +F
Sbjct: 5 RHRVHFTDSAD-MGAVESNSVNLVVTSPPYPMVEMWDDLFCSQNADIKAALSQGKGMQAF 63
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLW------------VIGSYHNIFRIGTMLQNLNFWIL 126
E R+L P V Y N RI T + NL F +
Sbjct: 64 EMMHRKLDQVWQETYRILAPGSFACINIGDATRTVDGVFQLYPNHARILTAMVNLGFSPM 123
Query: 127 NDIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYT-----FNYDALKA 173
I+WRK PN G HE ++ K + + +
Sbjct: 124 PLILWRKQTNAPNKFMGSGMLPAGAYVTLEHEYVLILRKGDKRQFKSAGEKENRRQSALF 183
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
E Q SD + ++L +K K P +L R++ + DI++DPF G
Sbjct: 184 WEERNQWFSDVWFDLKGTVQKLEDKAVRKR-SGSFPFSLPYRLINMFSVKQDIVVDPFLG 242
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
GT+ A R+ +G E+ + + ++RI +PL N E+
Sbjct: 243 LGTTTLAAMAAGRNSLGFEVDPGFWEPISQRIERSKPLLNQEILQR 288
>gi|114798140|ref|YP_761238.1| DNA methylase [Hyphomonas neptunium ATCC 15444]
gi|114738314|gb|ABI76439.1| DNA methylase [Hyphomonas neptunium ATCC 15444]
Length = 450
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 18/268 (6%)
Query: 21 DKIIKGNSISVLE---KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+ + L+ + + + F DPPYN+++ G + DH + S
Sbjct: 185 HRLLCGSCLEPLDWQCLMRGERARVCFTDPPYNVKIKGHVSSKDHDEFAMGSSE----MS 240
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E + AF L ++ + ++ + L LN VW K+N
Sbjct: 241 PEQFVAFLYGALGGAVEWSIDGAIHYICMDHRHMRELYAAADPLYSAQLNLCVWAKTNGG 300
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G +++ HE + + N + + W + + R+
Sbjct: 301 M---GSFYRSRHELVAVYK--VGTAPHINNVQLGRF---GRNRTNVWSYAGANTFRKGRD 352
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
KD HPT KP +++ ++ ++ PGDI +D F GSGT A++ R IE++ Y
Sbjct: 353 KD-IADHPTVKPVTMVADAIMDASAPGDICIDGFGGSGTLILAAERTNRVARVIELEPKY 411
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTE 285
D+A +R + G + TGK
Sbjct: 412 CDVAVRR--WEEMTGRQAVLDRTGKNPP 437
>gi|260878075|ref|ZP_05890430.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
AN-5034]
gi|113200498|gb|ABI32388.1| N6-methyltransferase [Vibrio parahaemolyticus]
gi|308089843|gb|EFO39538.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
AN-5034]
Length = 233
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++++ L L A SVDL+ DPPY L + + S +++ D
Sbjct: 16 LFQDDAVTWLSTLDAASVDLLITDPPYE-SLEKHRKIGTTTRLKVSKASSNQWFDIFPND 74
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F L RVLK + ++ +F I + + + F IVW K + G
Sbjct: 75 RFEAL-LSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIGM---G 130
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
++ HE +++ + +D IP +R+ +
Sbjct: 131 YHYRARHEYILFFEK-------------------GKRKLNDLSIPDILTHKRV-----YR 166
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+PT+KP +LL ++ S++ G++++DPFFGSG++ AK L R F G ++ Q +
Sbjct: 167 GYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQSAHEHIH 226
Query: 263 KRIAS 267
+R+
Sbjct: 227 QRMDF 231
>gi|291556505|emb|CBL33622.1| DNA modification methylase [Eubacterium siraeum V10Sc8a]
Length = 412
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/258 (18%), Positives = 96/258 (37%), Gaps = 35/258 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S V E L +L+ DPPYN+ G + + +
Sbjct: 167 RHRLVCGDSTKPEVYEILMDGTKANLVITDPPYNVNYEGSAGKIKNDNMAG--------- 217
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E + F A V+ + +++V + + F++ +W+K +
Sbjct: 218 --EKFYEFLLAAFKNMESVMAADASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L + + + YT + +
Sbjct: 276 VLGRSPYQWQHE-PVLYGWKKNGRHQWYTGRKETTIWEFDK------------------P 316
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K+GE HPT KP LL+ + +S+ ++LDPF GSG++ ++ R IE+ +
Sbjct: 317 KKNGE--HPTMKPIPLLAYPIGNSSMANSVVLDPFGGSGSTLIACEQTDRICRTIELDEK 374
Query: 257 YIDIATKRIASVQPLGNI 274
+ D+ R +
Sbjct: 375 FCDVIVNRYIEQAGSADS 392
>gi|54309137|ref|YP_130157.1| putative haemagglutinin associated protein [Photobacterium
profundum SS9]
gi|46913569|emb|CAG20355.1| Putative haemagglutinin associated protein [Photobacterium
profundum SS9]
Length = 219
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 37/248 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ K ++++ L L SVDLI DPPY + G R S ++ W +
Sbjct: 2 QVFKEDAVTWLSTLADASVDLIVTDPPYESLEKHRKIGTTTRLKVSKSS--SNQWFEIFP 59
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F L RVLK + ++ +F I + + + F I+W K +
Sbjct: 60 NNRFEDF----LREVYRVLKKDAHFYLFCDQETMFFIKPIAEKVGFKFWKPIIWDKVSIG 115
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G ++ HE +++ + +D IP +R+
Sbjct: 116 M---GYHYRARHEYILFFEK-------------------GKRKLNDLGIPDILEFKRV-- 151
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +PT+KP L+ ++ S+ ++++DPFFGSG + AK L R ++G ++
Sbjct: 152 ---YRGYPTEKPVELIQTLISQSSANYELVVDPFFGSGATLIAAKNLDRRYMGNDISDAA 208
Query: 258 IDIATKRI 265
+ R+
Sbjct: 209 HEHFRNRL 216
>gi|268683469|ref|ZP_06150331.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae SK-92-679]
gi|268623753|gb|EEZ56153.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae SK-92-679]
Length = 152
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ NS++V+ K+ P D+IFADPPY L +G + +V +WDK
Sbjct: 19 LYNENSLNVMRKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGM 77
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A F WL C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP P
Sbjct: 78 AADLEFYEEWLRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPP 137
Query: 139 NFRGRRFQNAHETL 152
N R F ++ ET+
Sbjct: 138 NLSCRFFTHSTETI 151
>gi|331090171|ref|ZP_08339059.1| hypothetical protein HMPREF1025_02642 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330402117|gb|EGG81689.1| hypothetical protein HMPREF1025_02642 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 412
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/266 (18%), Positives = 97/266 (36%), Gaps = 35/266 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S L +L+ DPPYN+ G + + +
Sbjct: 167 RHRLVCGDSTKAETYTTLMDGVKANLVITDPPYNVNYEGSAGKIKNDNMAG--------- 217
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E + F A V+ + +++V + + F++ +W+K +
Sbjct: 218 --EKFYEFLLAAFKNMESVMAADASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L + K + YT + +
Sbjct: 276 VLGRSPYQWQHE-PVLYGWKKNGKHQWYTGRKETTIWEFDK------------------P 316
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K+GE HPT KP LL+ + +S+ ++LDPF GSG++ ++ R IE+ +
Sbjct: 317 KKNGE--HPTMKPIPLLAYPIGNSSMANSVVLDPFGGSGSTLIACEQTDRICRTIELDEK 374
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
+ D+ R + + GK
Sbjct: 375 FCDVIVNRYIEQVGSADGVSVLRDGK 400
>gi|256367688|ref|YP_003108257.1| YcgA [Escherichia coli]
gi|5103178|dbj|BAA78814.1| ycgA [Plasmid R100]
gi|38606088|gb|AAR25052.1| YcgA [Escherichia coli]
gi|228480625|gb|ACQ41953.1| YcgA [Escherichia coli]
Length = 215
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 41/243 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ P +VD I DPPY + R ++ TD W +
Sbjct: 1 MATFPGNAVDFILTDPPYLVGFRD---RSGRTIAGDKTDEW------------LQPACNE 45
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RVLK + + ++ + R +N F ++ +V+ K+ + HE
Sbjct: 46 MYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSKAAYVGYRHEC 102
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ D L G + HPT+KP
Sbjct: 103 AYILAKGRPRLPQNPLPDVLGW-----------------------KYSGNRHHPTEKPVT 139
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y +R+A+VQ
Sbjct: 140 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRA 199
Query: 272 GNI 274
Sbjct: 200 MQQ 202
>gi|218129458|ref|ZP_03458262.1| hypothetical protein BACEGG_01035 [Bacteroides eggerthii DSM 20697]
gi|254881376|ref|ZP_05254086.1| gp10 [Bacteroides sp. 4_3_47FAA]
gi|217988188|gb|EEC54511.1| hypothetical protein BACEGG_01035 [Bacteroides eggerthii DSM 20697]
gi|254834169|gb|EET14478.1| gp10 [Bacteroides sp. 4_3_47FAA]
Length = 254
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 89/266 (33%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + + WDK F
Sbjct: 11 TLYKADCLEVMPFLPESSIDLVLCDPPFGITAS----------------QWDKIIPFPEM 54
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
RRV K N + GS + D VW KS
Sbjct: 55 -------WKEIRRVRKENAPTVLFGSEPFSSLLR---CGNLEEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + RN++
Sbjct: 105 AKKQPLKAHELISVFGK--GRTPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTFRNENK 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + + KR+ +
Sbjct: 223 YTHRKCICIEKDETHFSQGEKRVRNE 248
>gi|19908852|gb|AAM03022.1|AF472611_3 M.BcnIB [Brevibacillus centrosporus]
Length = 317
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 60/284 (21%), Positives = 105/284 (36%), Gaps = 54/284 (19%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYN------------------------------------ 50
+ +L K+P +S+DL+ PPY
Sbjct: 18 DCREILRKIPKESIDLLVTSPPYWAKRVYNEDEEGELGSEPTPEEFVKVLADYFDIFRPY 77
Query: 51 LQLNGQLYRPDHSLV--------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
++ G L+ + D +SF+ L + LK +G L
Sbjct: 78 IKKEGNLFVNIGDTFFGSGAGAWNKYLDEEGNTTSFQKERKEKYFTLKPLQPKLKQDGKL 137
Query: 103 WVIGSYHNIF-RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ I R +Q+ + + +DI+WRK N +P RF N +E + + K
Sbjct: 138 YQNKQLLLIPSRFAIEMQSRGWILRDDIIWRKPNRIPASVKDRFNNTYEHVFHFVQAKK- 196
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
Y F+ D++ M ++ + + + H PEAL+ + +
Sbjct: 197 --YYFDLDSV------KIMGANGKLKNPGDVWDINTQPLRGSHTATFPEALVDICIKCGS 248
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++ DPF G+GTS VA++L R FIG E+ ++ + KR
Sbjct: 249 PKNGLVFDPFMGTGTSWIVARRLNRRFIGSEINPEFYQFSIKRF 292
>gi|309379190|emb|CBX22147.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 677
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 20/209 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I G+++ VL+ L SV +I+ DPPYN L+G +Y+ D A
Sbjct: 147 NLLICGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGLDGFVYQDDRKFTPAELARLANIDE 206
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +L+ +G +++ + ++ +
Sbjct: 207 EEAARILDFTDKGSNSHSAWLTFMYPRLYVARELLREDGVIFISIDDNEAAQLKLLCDEV 266
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + P + F H+ LI + + +
Sbjct: 267 FGEGNFVEQIIWEKKFSPQNDAKYFSENHDYLICYAKNITELEIKLLPRTEGTNARYKNI 326
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D SG ++ ++ P
Sbjct: 327 DNDPRGAWTSGDLLRKDVQQSGIYTITTP 355
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ ++ + E + DG+ T KP L+ + L +T P D+ILD F GSGT+
Sbjct: 412 IWKFNEVGHNQEASQELRKLFDGDSYFDTPKPIRLIVQTLRLTTNPDDLILDFFAGSGTT 471
Query: 238 GAVAKKLR-------RSFIGIEM 253
+L R +I +++
Sbjct: 472 AHAVMQLNAEEQNGSRRYICVQL 494
>gi|34762179|ref|ZP_00143186.1| Chromosome partitioning protein parB [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27888140|gb|EAA25199.1| Chromosome partitioning protein parB [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 438
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 58/289 (20%), Positives = 116/289 (40%), Gaps = 28/289 (9%)
Query: 20 KDKIIKGN--SISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K K++ G+ ++ ++KL +++DL+ DPPYN+ N + + D +
Sbjct: 161 KHKLMCGDSTNLEDVKKLVANETMDLMVTDPPYNV--NYEATNGNKIKNDNM-------- 210
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E + F + V++ ++ + L+ F I ++W K+
Sbjct: 211 SSENFYRFLLDFYKNSFEVMRAGAAYYIFHADSETKAFRGALEEAGFKISQCLIWVKNQF 270
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNY--------DALKAANEDVQMRSDWLIPI 188
+ + + HE ++ A + ++ D N + + L +
Sbjct: 271 V--LSRQDYNWRHEPCLYGWKEGAAHYFIKDFTQDTVIEKDLKAIENYSKKELINILKQM 328
Query: 189 CSGSERLRNKDG---EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
E + ++ +HPT KP L++R++ +S+K ILD F GSG++ A++L
Sbjct: 329 LREQESIIRENKPLVNDVHPTMKPIKLIARLIHNSSKKDWNILDLFGGSGSTLIAAEQLN 388
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
R +E Y D+ KR S+ + GK + + L+
Sbjct: 389 RKAFLMEYDPKYADVIVKRYRSL--GKLDIILQREGKEYKWEDIKDELI 435
>gi|227543560|ref|ZP_03973609.1| ParB family nuclease domain and DNA-modification methylase domain
protein [Lactobacillus reuteri CF48-3A]
gi|300909411|ref|ZP_07126872.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
gi|227186400|gb|EEI66471.1| ParB family nuclease domain and DNA-modification methylase domain
protein [Lactobacillus reuteri CF48-3A]
gi|300893276|gb|EFK86635.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri SD2112]
Length = 409
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 96/258 (37%), Gaps = 35/258 (13%)
Query: 20 KDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + G++ + L V+L+ DPPYN+ + + + D +
Sbjct: 164 RHTLFCGDATKAESYQKLLGKTQVNLVLTDPPYNVDYQSKAGKIKN----------DHQA 213
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S + Y F + + + +++V + Q+ F++ +W+K +
Sbjct: 214 SDKFY-QFLLDAFQNMNQAMADDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSL 272
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L + K + YT ++ +
Sbjct: 273 VLGRSPYQWQHE-PVLYGWKKTGKHEWYTGRKESTIWEFD-------------------- 311
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL+ +++ST +LDPF GSG++ ++ +R+ +E+ +
Sbjct: 312 KPKKSKEHPTMKPIPLLAYPIMNSTMTNCTVLDPFGGSGSTLIACEQTKRTCFMMELDEK 371
Query: 257 YIDIATKRIASVQPLGNI 274
Y D+ KR
Sbjct: 372 YCDVIIKRYIEQVGSVQD 389
>gi|150400630|ref|YP_001324396.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
aeolicus Nankai-3]
gi|150013333|gb|ABR55784.1| DNA methylase N-4/N-6 domain protein [Methanococcus aeolicus
Nankai-3]
Length = 446
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 56/339 (16%), Positives = 109/339 (32%), Gaps = 50/339 (14%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + + II+ +S + + ++P SV LI PPY + V +
Sbjct: 1 MKTFHNVIIR-DSRN-MVEIPDNSVHLIITSPPYWQLKDY-----------GVEEQIGFN 47
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN------------------------- 110
S+E Y C RVL P + +
Sbjct: 48 DSYEEYINNLNLVWKECYRVLHPGCRMVINIGDQFARSVYYGRYKVIPIRTEIIKFAETI 107
Query: 111 -IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+G ++ N + P R + +E ++ A +
Sbjct: 108 GFDYMGAIVWQKNTTMNTTGGASVMGSYPYPRNGIIKIDYEHILIFKKPGNAPKPSKEIK 167
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
++ +G ++ + H PE L RI+ + G+ +LD
Sbjct: 168 EASKLTKEEWKEYFSGHWYFNGVKQDK-------HLAMFPEELPKRIIKMFSFVGETVLD 220
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
PF GSGT+ AKKL R+ IG E+ ++++ I ++ + Q + + ++
Sbjct: 221 PFLGSGTTSLAAKKLDRNSIGYELNKEFLPIILDKLGANQETLLKDYEIEVVEQNLNEDD 280
Query: 290 FNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
N I+ + + L G+++
Sbjct: 281 KNW---NDKIKELPYIFKDPVKFDKKIDP-KKLKFGSKI 315
>gi|25011171|ref|NP_735566.1| hypothetical protein gbs1120 [Streptococcus agalactiae NEM316]
gi|23095570|emb|CAD46779.1| unknown [Streptococcus agalactiae NEM316]
Length = 415
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 54/270 (20%), Positives = 106/270 (39%), Gaps = 22/270 (8%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +++ G++ LE+L DL DPPYN+ G+ +A+T D+
Sbjct: 156 KHRLMCGDATNPEHLERLLDGVEADLYLTDPPYNVAYQGKTS-------EALTIQNDQMK 208
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ A+ F A A LK ++ + + + ++W K++
Sbjct: 209 A-TAFQEFLTAAFQAVDTHLKAGAAFYIWHADSERLSFSKAISATGWLEKQCLIWVKNSF 267
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD---------WLIP 187
+ + +Q HE ++ + ++ ++ +S +
Sbjct: 268 VLG--RQDYQWQHEPCLYGWKPGAKHYFVTDFSLSTVLESSLEGKSKAELIALIKSYQEG 325
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ R+ + HPT KP AL+ R++ S++ D++LD F GSGT+ V ++L R
Sbjct: 326 QPTSILRVNRPQANQEHPTMKPLALIERLVRHSSRQEDVVLDTFAGSGTTLMVCEQLNRV 385
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELT 277
+E+ Y+ KR + +L
Sbjct: 386 NYSMELDPKYVQGILKRFERETGIKTKQLF 415
>gi|254884129|ref|ZP_05256839.1| gp10 [Bacteroides sp. 4_3_47FAA]
gi|255013645|ref|ZP_05285771.1| putative site-specific DNA-methyltransferase [Bacteroides sp.
2_1_7]
gi|254836922|gb|EET17231.1| gp10 [Bacteroides sp. 4_3_47FAA]
Length = 256
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 91/266 (34%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + + WDK
Sbjct: 11 TLYKADCLEVMPLLPESSIDLVLCDPPFGITAS----------------QWDKI------ 48
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
F++ W RRV K N + GS + D VW KS
Sbjct: 49 IPFSKMW-EEIRRVRKDNAPTALFGSEPFSSLLR---CGNLAEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + RN++
Sbjct: 105 AKKQPLKAHELISIF--CNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPTFRNENK 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + +RI +
Sbjct: 223 HTNRKCICIEKDDMHFSRGEERIRNE 248
>gi|255008159|ref|ZP_05280285.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
3_1_12]
gi|313145876|ref|ZP_07808069.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134643|gb|EFR52003.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 254
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 89/266 (33%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + + WDK F
Sbjct: 11 TLYKADCLEVMPFLPESSIDLVLCDPPFGITAS----------------QWDKIIPFPEM 54
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
RRV K N + GS + D VW KS
Sbjct: 55 -------WKEIRRVRKENAPTVLFGSEPFSSLLR---CGNLEEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + RN++
Sbjct: 105 AKKQPLKAHELISVFGK--GRIPYYPIMEEGEPYGNRTKRGSNWTGINNVPNPTFRNENK 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GTRYPRSVIYFKTAESEGKTIHVNQKPIALLQYLIRTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + + KR+ +
Sbjct: 223 YTHRKCICIEKDETHFSQGEKRVRNE 248
>gi|168702226|ref|ZP_02734503.1| adenine specific DNA methyltransferase, putative [Gemmata
obscuriglobus UQM 2246]
Length = 256
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 43/259 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I++G S++VL LP+++ DL+ ADPPY +G R D + V + + + Y
Sbjct: 13 RIVQGESLAVLVDLPSEAFDLVLADPPY---SSGGFTRGD--KISGVRKKYQQTGTRREY 67
Query: 82 DA-------------FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
A ++ WL C R +P V + + +Q +
Sbjct: 68 PAFAGDTRDQRAYGYWSALWLAQCLRAARPGTICGVFADWRQLPVTVDAIQAGGWVYRGI 127
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ W K P F ++ E L+W + P+
Sbjct: 128 VPWHKPGARPTQGR--FTSSCEYLVWGTKGPR----------------------PLEGAP 163
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
G + K +K H T KP LL ++ + G ++LDPF GS TS A R
Sbjct: 164 LPGFYSVGVKQADKHHLTGKPTELLRELVKIAPASG-LVLDPFAGSFTSAVAAALEGRRC 222
Query: 249 IGIEMKQDYIDIATKRIAS 267
+ IE + Y+ I +R+A
Sbjct: 223 LAIECEAPYVAIGRQRVAD 241
>gi|53714093|ref|YP_100085.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
YCH46]
gi|224026988|ref|ZP_03645354.1| hypothetical protein BACCOPRO_03747 [Bacteroides coprophilus DSM
18228]
gi|253567381|ref|ZP_04844830.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|255009155|ref|ZP_05281281.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
3_1_12]
gi|256840369|ref|ZP_05545877.1| DNA methylase [Parabacteroides sp. D13]
gi|265763626|ref|ZP_06092194.1| DNA methylase [Bacteroides sp. 2_1_16]
gi|293371328|ref|ZP_06617765.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
gi|294645298|ref|ZP_06723014.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
gi|294808760|ref|ZP_06767493.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
CC 1b]
gi|313146904|ref|ZP_07809097.1| DNA methylase [Bacteroides fragilis 3_1_12]
gi|52216958|dbj|BAD49551.1| putative site-specific DNA-methyltransferase [Bacteroides fragilis
YCH46]
gi|224020224|gb|EEF78222.1| hypothetical protein BACCOPRO_03747 [Bacteroides coprophilus DSM
18228]
gi|251943950|gb|EES84478.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|256737641|gb|EEU50967.1| DNA methylase [Parabacteroides sp. D13]
gi|263256234|gb|EEZ27580.1| DNA methylase [Bacteroides sp. 2_1_16]
gi|292633688|gb|EFF52243.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
gi|292639377|gb|EFF57679.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
gi|294444057|gb|EFG12791.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
CC 1b]
gi|313135671|gb|EFR53031.1| DNA methylase [Bacteroides fragilis 3_1_12]
Length = 256
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 91/266 (34%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + + WDK
Sbjct: 11 TLYKADCLEVMPLLPESSIDLVLCDPPFGITAS----------------QWDKI------ 48
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
F++ W RRV K N + GS + D VW KS
Sbjct: 49 IPFSKMW-EEIRRVRKDNAPTALFGSEPFSSLLR---CGNLAEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + RN++
Sbjct: 105 AKKQPLKAHELISIF--CNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPTFRNENK 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + +RI +
Sbjct: 223 HTNRKCICIEKDDMHFLRGEERIRNE 248
>gi|50914490|ref|YP_060462.1| adenine-specific methyltransferase [Streptococcus pyogenes
MGAS10394]
gi|40218562|gb|AAR83216.1| hypothetical protein [Streptococcus pyogenes]
gi|50261607|gb|AAT72375.1| methylase [Streptococcus pyogenes]
gi|50903564|gb|AAT87279.1| Chromosome partitioning protein [Streptococcus pyogenes MGAS10394]
Length = 410
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 53/279 (18%), Positives = 114/279 (40%), Gaps = 40/279 (14%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S + + + K +L+ DPPYN+ + + + D S
Sbjct: 166 KHQVICGDSTLPETYITLMGDKKANLVLTDPPYNVNVEETAGKIKN----------DNMS 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A + + ++ + +++V + + ++ F++ +W+K++
Sbjct: 216 DSDFY-KFLFAMFVNVEQNMESDASIYVFHADTEGYNFRKAFKDAGFYLSGCCIWKKNSL 274
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE ++ + + + D S
Sbjct: 275 VLGRSPYQW--QHEPCLFGWKNKGKHQWFSDRKQTTIWEYDRPKLS-------------- 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ G ++LDPF GSG++ ++ R GIE+ +
Sbjct: 319 -----KEHPTMKPIQLMAYPIQNSSMRGTVVLDPFLGSGSTLIACEETGRICYGIELDEK 373
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
++D+ KR + G+ + V+ R + + LVE
Sbjct: 374 FVDVIVKRY--FEATGDQSIKVM---RDGKEIKYADLVE 407
>gi|308095386|ref|ZP_05905466.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
Peru-466]
gi|308125326|ref|ZP_05774521.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
gi|308088761|gb|EFO38456.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
Peru-466]
gi|308111010|gb|EFO48550.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
Length = 220
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++++ L L A SVDL+ DPPY L + + S +++ D
Sbjct: 3 LFQDDAVTWLSTLDAASVDLLITDPPYE-SLEKHRKIGTTTRLKVSKASSNQWFDIFPND 61
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F L RVLK + ++ +F I + + + F IVW K + G
Sbjct: 62 RFEAL-LSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIGM---G 117
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
++ HE +++ + +D IP +R+ +
Sbjct: 118 YHYRARHEYILFFEK-------------------GKRKLNDLSIPDILTHKRV-----YR 153
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+PT+KP +LL ++ S++ G++++DPFFGSG++ AK L R F G ++ Q +
Sbjct: 154 GYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQSAHEHIH 213
Query: 263 KRIAS 267
+R+
Sbjct: 214 QRMDF 218
>gi|305432837|ref|ZP_07401995.1| type III restriction enzyme M protein [Campylobacter coli JV20]
gi|304443991|gb|EFM36646.1| type III restriction enzyme M protein [Campylobacter coli JV20]
Length = 820
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 54/316 (17%), Positives = 110/316 (34%), Gaps = 72/316 (22%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
+S++N + + ++ E + +++K ++ L L +DLI+ DPP+N +
Sbjct: 355 LSEENYYKLLSSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFD 414
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
DKF + + L + L G+ ++ + +
Sbjct: 415 YK--------------DKFQD-STWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRI 459
Query: 117 MLQNLNFWILNDIVWRKSNPMP---------------------------------NFRGR 143
+L + + +N N +
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWK 519
Query: 144 RFQNA------------HETLIWASPSPKAKGYTFNYDALKAANEDVQMR--------SD 183
+N+ T+ + Y + K +E + ++
Sbjct: 520 PNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQKWKNGKLYHEKIDIKDEKIYPLGDI 579
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
W +R + + +QKPE +L RI+ SS++ +++D F GSGT+ AV+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSEENSVVMDFFVGSGTTLAVSHK 639
Query: 244 LRRSFIGIEMKQDYID 259
L R +IGIEM + + +
Sbjct: 640 LNRKYIGIEMGEHFYE 655
>gi|323693302|ref|ZP_08107520.1| DNA methylase [Clostridium symbiosum WAL-14673]
gi|323502785|gb|EGB18629.1| DNA methylase [Clostridium symbiosum WAL-14673]
Length = 416
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 35/248 (14%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S E L +L+ DPPYN+ G + + D +
Sbjct: 167 HRLVCGDSTKPETYELLMNGKLANLVVTDPPYNVNYEGSAGKIKN----------DNMEN 216
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
Y F + + +++V + + F++ +W+K + +
Sbjct: 217 SAFY-QFLLDAYTRMYESMADDASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQSLV 275
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++ + L S K + YT + + + D
Sbjct: 276 LGRSPYQWMHE-PCLFGWKKSGKHQWYTGRKETTIWEFDKPKKNGD-------------- 320
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP LL+ +++S+ ++LDPF GSG++ ++ R IE+ + +
Sbjct: 321 ------HPTMKPIPLLAYPIMNSSMTNSLVLDPFGGSGSTLIACEQTGRICHTIELDEKF 374
Query: 258 IDIATKRI 265
D+ KR
Sbjct: 375 CDVIVKRY 382
>gi|283852819|ref|ZP_06370082.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. FW1012B]
gi|283571811|gb|EFC19808.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. FW1012B]
Length = 320
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 104/288 (36%), Gaps = 56/288 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+++ +L +LPA+SVDL F PPY PD Y
Sbjct: 42 FVHGDALELLPRLPARSVDLFFMSPPYADARAYSRIHPDR------------------YV 83
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYH-------------NIFRIGTMLQNLNFWILNDI 129
+ + A K +G++ + ++ + LQ++ + L
Sbjct: 84 EWFLPFARAMLDAAKDSGSMILNIKNRVANRGALKGQRHPYVYALVLALQHMGWRWLETY 143
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK------GYTFNYDALKAANEDVQMRSD 183
+W K N +P G R +++ E + + + + D + A
Sbjct: 144 IWAKPNAVPGRFGPRTKDSFEYVYHFAKGVRPHFDLDAVRVPYKADPAEIARRKRDTLGR 203
Query: 184 WLIPICSGSERLR-------------------NKDGEKLHPTQKPEALLSRILVSSTKPG 224
G +R + N+ H PE L + ++ G
Sbjct: 204 RNTMAGFGRDRTKTYLLGGADPGNVVSVPQTYNQHRGVAHTAAMPEGLAEFFIRVASPAG 263
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+++DPF GSGT+ VA++L R G E+ ++Y+ A +R+A+
Sbjct: 264 GVVIDPFAGSGTTVVVARRLGRLAGGFELHEEYVAEAKRRLAADVADD 311
>gi|254374752|ref|ZP_04990233.1| predicted protein [Francisella novicida GA99-3548]
gi|151572471|gb|EDN38125.1| predicted protein [Francisella novicida GA99-3548]
Length = 839
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 57/323 (17%), Positives = 106/323 (32%), Gaps = 66/323 (20%)
Query: 14 NSIFEWKDKI-IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
+ + I IK + ++ + + + I+ DPP+N + D
Sbjct: 400 EDLDNSLNGILIKSENYQAMQTILPKFKEKIQCIYIDPPFNTGSDFDYK-------DGYQ 452
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
D + + L R L+ +G+L++ Y +R +L N
Sbjct: 453 D--------STWLSIMYDRLAIARDFLRDDGSLYLHLDYRANYRGRELLNNTFGCDHLLN 504
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWA--SPSPKAKGYTFNYDALKAANE----------- 176
+ + + N H+T+ S + K Y + N+
Sbjct: 505 EVVYGYRIQGIKRNAYANKHDTIYIYTKSKPDENKHYFQVEKERQIYNKPFIDTETISPE 564
Query: 177 -----DVQM-------------------------RSDWLIPICSGSERLR----NKDGEK 202
D SD + ++ +
Sbjct: 565 ISSLTDKDFKYLIDSILNKKVLKDRYKDLLFNSYYSDTFVRDVWDHDKTKPLISGSSEYL 624
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
TQK + LLSR++ +S+K I+D F GSGT+ A A KL R ++GIEM + + ++
Sbjct: 625 QFKTQKSQGLLSRVISNSSKENHCIMDFFSGSGTTVATAHKLGRKWLGIEMGEHFDNVII 684
Query: 263 KRIASVQPLGNIELTVLTGKRTE 285
R+ V ++ K +
Sbjct: 685 PRMKKVLFGFECGISKELKKEDK 707
>gi|28897168|ref|NP_796773.1| haemagglutinin associated protein [Vibrio parahaemolyticus RIMD
2210633]
gi|28805377|dbj|BAC58657.1| haemagglutinin associated protein [Vibrio parahaemolyticus RIMD
2210633]
Length = 221
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++++ L L A SVDL+ DPPY L + + S +++ D
Sbjct: 4 LFQDDAVTWLSTLDAASVDLLITDPPYE-SLEKHRKIGTTTRLKVSKASSNQWFDIFPND 62
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F L RVLK + ++ +F I + + + F IVW K + G
Sbjct: 63 RFEAL-LSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIGM---G 118
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
++ HE +++ + +D IP +R+ +
Sbjct: 119 YHYRARHEYILFFEK-------------------GKRKLNDLSIPDILTHKRV-----YR 154
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+PT+KP +LL ++ S++ G++++DPFFGSG++ AK L R F G ++ Q +
Sbjct: 155 GYPTEKPVSLLEVLVAQSSRDGELVVDPFFGSGSTLVAAKNLNRRFKGNDISQSAHEHIH 214
Query: 263 KRIAS 267
+R+
Sbjct: 215 QRMDF 219
>gi|307947054|ref|ZP_07662389.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
TrichSKD4]
gi|307770718|gb|EFO29944.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
TrichSKD4]
Length = 470
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 51/251 (20%), Positives = 90/251 (35%), Gaps = 10/251 (3%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
L+F DPPYN+ +NG + + + S E + F L A L
Sbjct: 222 LLFTDPPYNVPVNGHVSGLGKKTHREFVEGAGEM-SREGFTGFLTETLSAAASCLCNGAI 280
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+V + ++ + + + N VW K+N G +++ HE + A
Sbjct: 281 AFVCMDWRHMREVLDAGEAAFDELKNLCVWNKTNAGM---GSFYRSKHELVFVFKKGRGA 337
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
+ E + W + R++D +HPT KP A++ ++ +
Sbjct: 338 H-----LNNFGLGEEGRYRTNVWDYAGANSFGTSRDED-LAMHPTVKPIAMVKDAILDCS 391
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
K GD ILD F GSG++ A + R +E+ Y D+ +R + +
Sbjct: 392 KRGDAILDVFGGSGSTLIAADQAGRHARLMELDPLYCDVIVRRFQKITGKTALHAETGKS 451
Query: 282 KRTEPRVAFNL 292
Sbjct: 452 FNALEEERAGN 462
>gi|299769744|ref|YP_003731770.1| phage DNA methylase [Acinetobacter sp. DR1]
gi|298699832|gb|ADI90397.1| phage DNA methylase [Acinetobacter sp. DR1]
Length = 253
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 57/270 (21%), Positives = 96/270 (35%), Gaps = 40/270 (14%)
Query: 20 KDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K+KI + G+ + + ++ +VD+I D PY WD
Sbjct: 2 KNKIQLMLGDCLERMREVETGTVDMILCDLPYGT----------------TCCKWDVVIP 45
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F+ + W RV+K NG + + + + T + + +W K
Sbjct: 46 FK------QLW-EQYERVIKNNGAIVLFSAQPFTSILAT---SNLKLFRYEWIWEKPAAT 95
Query: 138 PNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS-----DWLIPICSG 191
AHE ++ S + + + + S I
Sbjct: 96 GFLNADIQPLRAHENILVFYKSLPTFNPQKTFGHKRKTAKRKDIGSALYGKQMNIKDYDS 155
Query: 192 SER------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ER + ++D +H TQKP L ++ S T PG+++LD GSGT+G
Sbjct: 156 TERYPRSVQIFSRDFPVVHDTQKPVDLCEFLIRSYTNPGELVLDNTMGSGTTGVACVNTG 215
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
R+FIGIE A RI + +
Sbjct: 216 RNFIGIEKDIKTFQTAEDRIKEAHKNKDKQ 245
>gi|124008729|ref|ZP_01693419.1| chromosome partitioning protein, putative [Microscilla marina ATCC
23134]
gi|123985805|gb|EAY25678.1| chromosome partitioning protein, putative [Microscilla marina ATCC
23134]
Length = 495
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 14/286 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQL---NG 55
++ + + + + K ++I G+S+ E L + ++ DPPYN+ G
Sbjct: 203 EEEAEIVVQKGEVYELNGKHRLICGDSLLAETFETLMNGTLARILITDPPYNIPYSLFGG 262
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
V + + D+ + F ++ + + +++ +
Sbjct: 263 LGKVQHEDFVMGIGEMSDQ-----EFVEFLATYMRHAVGHTVDGSIHYNFIDFRHVWHMC 317
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ V + + G ++ HE +N
Sbjct: 318 EAGGKVYGSHEPKQVCVWNKSI-QANGSFYRAKHEFCFIFKSGEAKHLSHLELKDRFRSN 376
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
V + + HPT KP +++ L+ +T GDI LD F GSG
Sbjct: 377 --VWEYKSANDFSNEERKEFGRLGALENHPTPKPVRMIADALLDTTNEGDIALDCFLGSG 434
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
T+ A++ RR GIE + Y+ R N +
Sbjct: 435 TTLMAAERTRRICYGIEYEPGYMQGILTRFIHHCQTENKPFEIKCN 480
>gi|294012595|ref|YP_003546055.1| putative DNA modification methylase [Sphingobium japonicum UT26S]
gi|292675925|dbj|BAI97443.1| putative DNA modification methylase [Sphingobium japonicum UT26S]
Length = 443
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 13/247 (5%)
Query: 21 DKIIKGNSI--SVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G+S V EKL + ++F D PYN+ +NG + D S
Sbjct: 177 HRLICGDSTKGEVFEKLMGDELAQMVFTDAPYNVPVNGHICGLGKVQHDEFI-MGAGEMS 235
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F + + + ++ + + + + N +VW K N
Sbjct: 236 RAEFTDFLARVMDNLAAYSVDGSIHYQCMDWRHMGEMLEAGERVYDSLRNLVVWNKDNGG 295
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G +++ HE + A F +V + +E L
Sbjct: 296 M---GTFYRSKHELIFVFRKGSAAHINNFELGQHGRYRTNVWDYAGVNSLKADRNEELA- 351
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+HPT KP +++ ++ ++ G I+LD F GSGT+ A++ R +EM Y
Sbjct: 352 -----MHPTVKPVKMVADAMLDCSRHGGIVLDAFSGSGTTIIAAEQTGRLGRAVEMDPRY 406
Query: 258 IDIATKR 264
+D+A +R
Sbjct: 407 VDVAVRR 413
>gi|260588283|ref|ZP_05854196.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
gi|260541421|gb|EEX21990.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
Length = 259
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/263 (19%), Positives = 87/263 (33%), Gaps = 35/263 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I L LP SVD++ DPPY N WD
Sbjct: 16 LFLMDGIEGLRSLPKHSVDMLLTDPPYGTTRNY----------------WDVPLPL---- 55
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A + +KPNG + + + ++ + N
Sbjct: 56 ---PELWEAVKWAVKPNGAV-LFFAQCPFDKVLGASNLAMLRYEWIWYKERGTGFLNANR 111
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE--RLRNKDG 200
+ + L++ SP + S++ GSE R G
Sbjct: 112 APLKKSENILVFYQKSPVYNPQFTYGKPYTRVHSRSGTSSNYGKFERQGSESNDGRRYPG 171
Query: 201 EK---------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+HPTQKP L ++ + T+PG+++ D GSGT+ A R F+
Sbjct: 172 NVLFVPTVSGGIHPTQKPVELCEYLIRTYTRPGELVADICAGSGTTAIAAINTERRFVCF 231
Query: 252 EMKQDYIDIATKRIASVQPLGNI 274
E + A++RI + Q + +
Sbjct: 232 ETAPSFYAAASERIRAAQAVKSS 254
>gi|255746753|ref|ZP_05420700.1| hemagglutinin associated protein [Vibrio cholera CIRS 101]
gi|262153440|ref|ZP_06028572.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae INDRE
91/1]
gi|262168142|ref|ZP_06035840.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae RC27]
gi|255736507|gb|EET91905.1| hemagglutinin associated protein [Vibrio cholera CIRS 101]
gi|262023385|gb|EEY42088.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae RC27]
gi|262030797|gb|EEY49429.1| N6 adenine-specific DNA methyltransferase [Vibrio cholerae INDRE
91/1]
Length = 217
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 37/247 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN----GQLYRPDHSLVDAVTDSWDKFSS 77
KI + +++ L+ L SVDL DPPY G R S ++ W
Sbjct: 3 KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIGTTTRLKESKSS--SNQWFSVFP 60
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ RVLK ++ +F + +++ F IVW K
Sbjct: 61 NTRFEEL----FREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKCAIG 116
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y Y+ + + + +D +P +R+
Sbjct: 117 MGY----------------------HYRARYEFILFFEKGKRKLNDLSVPDVLEYKRVW- 153
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K +PT+KP LL ++ S+ +I+ D FFGSG++ A L R +IG ++
Sbjct: 154 ----KGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGSTLIAANNLSRKYIGCDISSSA 209
Query: 258 IDIATKR 264
+ R
Sbjct: 210 HEYFKNR 216
>gi|15644891|ref|NP_207061.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
26695]
gi|2313355|gb|AAD07329.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
26695]
Length = 252
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 92/256 (35%), Gaps = 35/256 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PYNL + Q D F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCITSLPYNLSIEYQGS--------------DDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFR------IGTMLQNLNFWILNDIVWRKS 134
+ + WL C K L V + + I + + + N I+W +S
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCLNVPLDTNKHGKQSLGADIIAIAKECGWKYQNTIIWNES 116
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIPIC 189
N + A A Y Y + + E + +
Sbjct: 117 NISRRTAWGSWLQASAPYAIAPVELIVVFYKNEYKRQKQTSTISKEEFLLYTNGLWNFSG 176
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+RL+ HP P L R + + D I DPF GSGT+ A L R +
Sbjct: 177 ESKKRLK-------HPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSV 229
Query: 250 GIEMKQDYIDIATKRI 265
G++++++Y +++ KRI
Sbjct: 230 GLKIEKEYCELSKKRI 245
>gi|237719964|ref|ZP_04550445.1| gp10 [Bacteroides sp. 2_2_4]
gi|229450516|gb|EEO56307.1| gp10 [Bacteroides sp. 2_2_4]
Length = 256
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 91/266 (34%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + + WDK
Sbjct: 11 TLYKADCLEVMPLLPESSIDLVLCDPPFGITAS----------------QWDKI------ 48
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
F++ W RRV K N + GS + D VW KS
Sbjct: 49 IPFSKMW-EEIRRVRKDNAPTALFGSEPFSSLLR---CGNLAEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + RN++
Sbjct: 105 AKKQPLKAHELISIF--CNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPTFRNENK 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GTRYPRSVKYFKTAESEGKTIHVNQKPIALLKYLIKTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + +RI +
Sbjct: 223 HTNRKCICIEKDDMHFLRGEERIRNE 248
>gi|255690831|ref|ZP_05414506.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
17565]
gi|260623637|gb|EEX46508.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
17565]
Length = 252
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 87/264 (32%), Gaps = 43/264 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ LP S+DL+ DPP+ + ++ WDK F
Sbjct: 11 TLYKADCLEVMPFLPESSIDLVLCDPPFGITVS----------------QWDKIIPFPEM 54
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
RRV K N + GS + D VW KS
Sbjct: 55 -------WKEIRRVRKKNAPTVLFGSEPFSSLLR---CGNLDEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHE--------TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
++ AHE + + + + Y + + G
Sbjct: 105 AKKQPLKAHELISVFGRGEIPYYPIMEEGEPYGNRTKRGSNWTGVNNVPNPTFRHENKGR 164
Query: 193 E--------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ +G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 165 RYPRSVKYFKTAESEGKTIHVNQKPIALLQYLIKTYTKEGDTVLDFASGSMSTAIACIYT 224
Query: 245 RRSFIGIEMKQDYIDIATKRIASV 268
R I IE + Y +R+ +
Sbjct: 225 NRKCICIEKDETYFSQGEERVRNE 248
>gi|188995976|ref|YP_001930227.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931043|gb|ACD65673.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 412
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/328 (16%), Positives = 108/328 (32%), Gaps = 47/328 (14%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ W K+ +S S +E++ +S+ LI PPY + V +
Sbjct: 1 MDNWI-KLYVADSRS-MEEVEDESISLIITSPPYWHIKDY-----------GVENQIGYG 47
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIV 130
+ Y L C RVLKP L + R + + + +
Sbjct: 48 QTLHDYLKDLYRVWLECFRVLKPGRRLCINVGDQFARSVIYGRYKVIPIHSEIISQCEKI 107
Query: 131 WRKSNPMPNFRGRRFQNA---------------------HETLIWASPSPKAKGYTFNYD 169
++ + N +E ++ + +
Sbjct: 108 GFDYMGSIIWQKKTTMNTTGGAVVMGSYPYPPNGLIEIDYEYILIFKKPGGKEKIAKDIK 167
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
++ + G E+ + H PE L R++ + G+ +LD
Sbjct: 168 EKSKLTKEEWKE-YFSGHWKFGGEK------QINHEAMFPEELPKRLIKMFSFVGETVLD 220
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP-LGNIELTVLTGKRTEPRV 288
PF GSGT+ VA L+R+ IG E+ + ++DI ++I+ I++ K +
Sbjct: 221 PFVGSGTTLKVANLLQRNAIGYEINEKFLDIIKQKISFKDILFTKIDVIKRETKTEVKPI 280
Query: 289 AFNLLVERGLIQPGQILTNAQGNISATV 316
+ ++ + N + + + V
Sbjct: 281 DYTPSIQDAKPEIDPKKLNFKKDSTYKV 308
>gi|294783251|ref|ZP_06748575.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium sp. 1_1_41FAA]
gi|294480129|gb|EFG27906.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium sp. 1_1_41FAA]
Length = 438
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 53/278 (19%), Positives = 109/278 (39%), Gaps = 26/278 (9%)
Query: 20 KDKIIKGN--SISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +++ G+ ++ ++KL ++DL+ DPPYN+ N + + D +
Sbjct: 161 KHRLMCGDSTNLEDVKKLVNNETMDLMVTDPPYNV--NYEAKNGNKIKNDNM-------- 210
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E + +F + V++ ++ + L+ F I ++W K+
Sbjct: 211 SSENFYSFLLEFYKNSFEVMRTGAAYYIFHADSETKAFRGALEEAGFKISQCLIWVKNQF 270
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS---- 192
+ + + HE ++ A + ++ +D++ ++
Sbjct: 271 V--LSRQDYNWRHEPCLYGWKEGAAHYFIKDFTQDTVIEKDLKSIENYSKKELINILKQL 328
Query: 193 -------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
R +HPT KP L++R++ +S+K ILD F GSG++ A++L
Sbjct: 329 LKEQESIIRENKPQRNDVHPTMKPIKLIARLIHNSSKKEWNILDLFGGSGSTLIAAEQLN 388
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
R +E Y D+ KR ++ L L +
Sbjct: 389 RKSFLMEYDPKYADVIVKRYRTLGKLDITLLREGKEYK 426
>gi|257075994|ref|ZP_05570355.1| MthZ [Ferroplasma acidarmanus fer1]
Length = 345
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/294 (20%), Positives = 107/294 (36%), Gaps = 26/294 (8%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
+ KII ++ ++++ ++SVDL+ PPY +++ ++ + + +
Sbjct: 1 MKTLHKIIYSDARE-MKEVKSESVDLMITSPPYPMIKMWDDMFSVQNPEIAEALREENGE 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNF 123
+FE + RVLK G + Y N RI +L F
Sbjct: 60 KAFELMNKELDKVWKEVYRVLKIGGIACINIGDATRSLGGKFQIYTNHARILNYCLSLGF 119
Query: 124 WILNDIVWRKSNPMPN--------FRGRRFQNAHETL----IWASPSPKAKGYTFNYDAL 171
L +I+W K P+ G HE + K+ N
Sbjct: 120 HALPEILWLKETNKPDKFMGSGMLPVGAYVTLEHEYILILRKGYKREFKSAEEKLNRQNS 179
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
E+ +G + N + P L R++ + GD ILDPF
Sbjct: 180 AFFWEERNTWFSDKWNDLNGVFQRLNHIKVRERSGAYPIELAYRLINMFSVQGDTILDPF 239
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
G+GT+ A R+ IG E+ ++ DI +RI +++ NI + + E
Sbjct: 240 LGTGTTTLGAIASARNSIGYEIDGNFKDIVEERIKNIKDTSNIYIDERLSRHIE 293
>gi|157414587|ref|YP_001481843.1| hypothetical protein C8J_0267 [Campylobacter jejuni subsp. jejuni
81116]
gi|157385551|gb|ABV51866.1| hypothetical protein C8J_0267 [Campylobacter jejuni subsp. jejuni
81116]
Length = 820
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 51/316 (16%), Positives = 107/316 (33%), Gaps = 72/316 (22%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
+S++N + +++ E + +++K ++ L L +DLI+ DPP+N +
Sbjct: 355 LSEENYYKLLSAFDNLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFD 414
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
DKF + + L + L G ++ + +
Sbjct: 415 YK--------------DKFQD-STWLSLMHNRLELAKEFLSDKGNFYLHLDENADYFGRI 459
Query: 117 MLQNLNFWILNDIVWRKSNPMP---------------------------------NFRGR 143
+L + + +N N +
Sbjct: 460 LLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWK 519
Query: 144 RFQNA------------HETLIWASPSPKAKGYTFNYDALKAANEDVQMR--------SD 183
+N+ T+ + Y + K +E + ++
Sbjct: 520 PNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGKLCHEKIDIKDEKIYPLGDI 579
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
W +R + + +QKPE +L RI+ SS+ +++D F GSGT+ V+ K
Sbjct: 580 WNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHK 639
Query: 244 LRRSFIGIEMKQDYID 259
L R ++G+EM + + +
Sbjct: 640 LNRKYLGVEMGEHFYE 655
>gi|153955267|ref|YP_001396032.1| DNA methylase [Clostridium kluyveri DSM 555]
gi|146348125|gb|EDK34661.1| DNA methylase [Clostridium kluyveri DSM 555]
Length = 413
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 48/266 (18%), Positives = 98/266 (36%), Gaps = 35/266 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + L +L+ DPPYN+ G + + D ++
Sbjct: 167 HRLVCGDSTKKDTFDVLMDGKTANLVVTDPPYNVNYEGTAGKIKN----------DNMAN 216
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
YD F A + + +++V + + F++ +W+K + +
Sbjct: 217 EAFYD-FLLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV 275
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++ HE +++ + SD E+ +
Sbjct: 276 LGRSPYQW--QHEPILFGWKKKGKHNW----------------YSDRKQTTIWEFEKPKK 317
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP AL++ +++S+ I+LDPF GSG++ ++ R IE+ + Y
Sbjct: 318 ---NSDHPTMKPVALVAYPILNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKY 374
Query: 258 IDIATKRIASVQPLGNIELTVLTGKR 283
D+ KR + + G +
Sbjct: 375 CDVIVKRYIEQVGNSDGVFLLRDGSK 400
>gi|284165403|ref|YP_003403682.1| DNA methylase N-4/N-6 domain protein [Haloterrigena turkmenica DSM
5511]
gi|284015058|gb|ADB61009.1| DNA methylase N-4/N-6 domain protein [Haloterrigena turkmenica DSM
5511]
Length = 370
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 59/276 (21%), Positives = 110/276 (39%), Gaps = 29/276 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDK 74
E ++ G+S L + SV+L+ PPY + + R D ++ DA+ ++ D
Sbjct: 1 METTHRVFVGDSRD-LAAIDDDSVELVVTSPPYPMIEMWDDLFTRLDPAVGDAL-EAGDG 58
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLN 122
+F+A A RVL G + Y N R+ ++
Sbjct: 59 RRAFDAMHAQLDRVWDELERVLVDGGIACINVGDATRSVDDSFRVYANHARVLEAFESRG 118
Query: 123 FWILNDIVWR---KSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGY----TFNYDA 170
F L DI+WR S G NA HE ++ +++ + Y+A
Sbjct: 119 FDPLPDILWRKPANSAAKFMGSGMIPPNAYVTLEHEYVLVFRKGGESRSFEPGADRRYEA 178
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILD 229
E + SD + + L ++ + + P + R++ + GD +LD
Sbjct: 179 AYFWEERNRWFSDVWTDVRGELQALSDEHDDLRDRSAAYPLEIPYRLICMYSAYGDTVLD 238
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
PF+G+GT+ A R+ +G E++ ++++ R+
Sbjct: 239 PFWGTGTTTLAAMYAGRNSVGSELESSFLEVFDDRL 274
>gi|297585281|ref|YP_003701061.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297143738|gb|ADI00496.1| DNA methylase N-4/N-6 domain protein [Bacillus selenitireducens
MLS10]
Length = 413
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 52/266 (19%), Positives = 102/266 (38%), Gaps = 35/266 (13%)
Query: 20 KDKIIKGNSIS--VLEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ K+I G+S V L + +L+ DPPYN+ + + + DK
Sbjct: 165 RHKLICGDSTDPDVYAALMGGEEANLVVTDPPYNVNYSSKAGSIQN----------DKQE 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y +F + V+ + +++V + + ++ F++ +W K +
Sbjct: 215 DGDFY-SFLLKAYQNMKTVMAKDASIYVFHADTEGYNFRKAFKDAGFYLSGVCIWAKQSL 273
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ + + + D +SD
Sbjct: 274 VLGRSPYQW--KHEPVLFGWRQDGKHEWYGDRKQSTLWHFDRPSKSD------------- 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
LHPT KP AL + + +S+ I+LDPF GSG++ ++ R IE+
Sbjct: 319 ------LHPTMKPVALCAYPIQNSSLSNCIVLDPFGGSGSTMMACEQTNRIARLIELDPK 372
Query: 257 YIDIATKRIASVQPLGNIELTVLTGK 282
Y D+ KR + + + GK
Sbjct: 373 YADVIVKRYIDFKERTDDVTLIRDGK 398
>gi|396849|emb|CAA45447.1| unnamed protein product [Vibrio cholerae]
gi|746236|prf||2017285G hemagglutinin
Length = 217
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 37/247 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG----QLYRPDHSLVDAVTDSWDKFSS 77
KI + +++ L+ L SVDL DPPY R S ++ W
Sbjct: 3 KIYQMDAVDWLKTLENCSVDLFITDPPYESLEKYRQIVTTTRLKESKSS--SNQWFSVFP 60
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ RVLK ++ +F + +++ F IVW K
Sbjct: 61 NTRFEEL----FREVYRVLKKGSHFYLFCDQETMFLAKPIAESVGFKFWKPIVWDKCRIG 116
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y Y+ + + + +D +P +R+
Sbjct: 117 MGY----------------------HYRARYEFILFFEKGKRKLNDLSVPDVLEYKRVW- 153
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K +PT+KP LL ++ S+ +I+ D FFGSG + A L R +IG ++
Sbjct: 154 ----KGYPTEKPVELLEVLIRQSSSENEIVADSFFGSGATLIAANNLSRKYIGCDISMSA 209
Query: 258 IDIATKR 264
+ R
Sbjct: 210 HEYFKNR 216
>gi|114326568|ref|YP_743727.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas
eutropha C91]
gi|114326627|ref|YP_743785.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas
eutropha C91]
gi|114309507|gb|ABI60749.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas eutropha C91]
gi|114309566|gb|ABI60807.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas eutropha C91]
Length = 662
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
I + R++ G +PT+KPE LL RI+ + G ++LD F GSGT+ A+KL
Sbjct: 334 QSIWTDCGRMK---GGSDYPTRKPEQLLERIITAGCPAGGVVLDTFVGSGTTAVAAQKLG 390
Query: 246 RSFIGIEMKQDYIDIATKRI-----ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
R FI ++ + +TKR+ +Q N E G E N + R +Q
Sbjct: 391 RKFIVADINLGAVQSSTKRLINSAVEILQQPLNEEERAFWGF--EIHNVNNYDIFRNPVQ 448
Query: 301 PGQILTNA---QGNISATV---CADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEK 354
++L A Q +TV DG ++ ++ ++R+ + +E G+++ +E+
Sbjct: 449 AKELLIEALEIQKLEFSTVFDGEKDGRMV---KIMPVNRIATRADLNELIAGFDYKAWER 505
Query: 355 LGELHS 360
Sbjct: 506 KQNESP 511
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 10/164 (6%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG-QLYRPDHSLVDAV- 68
+ W++KI G+++ V+ L +D+++ DPP++ + + + V
Sbjct: 61 EEVDGWRNKIFWGDNLQVMSHLLKQFRGKIDMVYIDPPFDSKADYRKKIHLKGITVAGDM 120
Query: 69 ----TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNF 123
+ + + Y F L+ R +L G++WV +H I +L +
Sbjct: 121 AAFEDKQYGDLWTNDEYLQFMYERLVLLRELLTEEGSIWVQCDWHRSHHIRCLLEEIFGS 180
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ V + N R H+T+ W + + + Y +
Sbjct: 181 SNFLNEVAWQRTDPHNDAKSRLGIIHDTIFWVAKNKEKVFYDWQ 224
>gi|116486909|emb|CAH64696.1| DNA methylase [Wolbachia endosymbiont of Drosophila teissieri]
gi|326485621|gb|ADZ76079.1| DNA methyltransferase [Wolbachia endosymbiont of Drosophila
santomea]
Length = 404
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 93/265 (35%), Gaps = 36/265 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L D+ DPPYN+ R D +++
Sbjct: 163 HRIYCGDSSLVESYKALLDDKMADITVCDPPYNVDYVSSQEREDKKILNDNQG------- 215
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + + I+W K++
Sbjct: 216 -EKYELFLYDICSNILAYTK--GAIYICTSSSEFSTLQKVFEEAGGRWSTFIIWAKNHFT 272
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 273 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPT------- 313
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ + +V+S++ GDI+LDPF GSG++ ++ R IE+ +
Sbjct: 314 --HNTLHPTMKPVELMEKAIVNSSRSGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 371
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+D+ KR G + TGK
Sbjct: 372 VDVTIKR--WQVYTGREAILSGTGK 394
>gi|325107559|ref|YP_004268627.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
5305]
gi|324967827|gb|ADY58605.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
5305]
Length = 232
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 54/267 (20%), Positives = 95/267 (35%), Gaps = 42/267 (15%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E+ +++ ++ +L KLP +S+D + DP Y N +
Sbjct: 1 MNEFVNQVFHADARHLLAKLPEESIDAVICDPMYGTAKNYEYEWGIDPANG--------- 51
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
E + + + CRRVLKP G L + + Q+ + R
Sbjct: 52 -DPELHWEYHKPIYEECRRVLKPGGALA----WGQGAKFCEHFQDWLGNHRVWTITRFRP 106
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ G + + + K + N
Sbjct: 107 KGKSATGHAW-------VVQTREQKPIPMPDRDSLVICDNVG------------------ 141
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
KLHP K L ++ TKPGDI+LD G G++ A++L R +IG ++ Q
Sbjct: 142 ---PIRKLHPCIKMVEELKFVVEELTKPGDIVLDCCCGLGSTLLAAEQLGRRWIGCDISQ 198
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGK 282
Y IA R+ +++ + ++ T K
Sbjct: 199 RYSQIAKLRMENLRSHMESQGSLRTQK 225
>gi|332296748|ref|YP_004438670.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
12168]
gi|332179851|gb|AEE15539.1| DNA methylase N-4/N-6 domain protein [Treponema brennaborense DSM
12168]
Length = 399
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 65/316 (20%), Positives = 105/316 (33%), Gaps = 49/316 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N + I + I G+S +L + PA+S+DL+F PPY
Sbjct: 101 NGDSPKISHVINTIGLGDSEELLNETPAESIDLVFTSPPYY----------------NAR 144
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------FRI 114
+ + ++E Y R + AC RVL + S I F
Sbjct: 145 PEYADYETYEDYLNKMRKIIRACHRVLNEGRFFVINISPILIRRSSRSESSKRIAVPFDF 204
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ F ++DI+W K GR + + + Y Y
Sbjct: 205 HRLFIEEGFEFIDDIIWVKPEGAGWATGRGRRFSADRNPLQYKPVPVTEYILVYRKKTDK 264
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDG-------------EKLHPTQKPEALLSRILVSST 221
D +R + E+ + +DG K HP P +L +++ +
Sbjct: 265 LIDWHIRKHPDQKLV---EQSKIEDGYEVTNIWKITPAHSKKHPAIFPVSLAEKVIQYYS 321
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
D+ILDPF G GT G A KL R ++ EM +Y+ ++ ++
Sbjct: 322 FVNDVILDPFGGIGTVGDAANKLNRRYVLFEMNDEYMKEIKQKALRWTSGKVDQIN--WI 379
Query: 282 KRTEPRVAFNLLVERG 297
P L G
Sbjct: 380 NTQPPNRNQKYLEFTG 395
>gi|219855690|ref|YP_002472812.1| hypothetical protein CKR_2347 [Clostridium kluyveri NBRC 12016]
gi|219569414|dbj|BAH07398.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 347
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 48/266 (18%), Positives = 98/266 (36%), Gaps = 35/266 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + L +L+ DPPYN+ G + + D ++
Sbjct: 101 HRLVCGDSTKKDTFDVLMDGKTANLVVTDPPYNVNYEGTAGKIKN----------DNMAN 150
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
YD F A + + +++V + + F++ +W+K + +
Sbjct: 151 EAFYD-FLLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV 209
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++ HE +++ + SD E+ +
Sbjct: 210 LGRSPYQW--QHEPILFGWKKKGKHNW----------------YSDRKQTTIWEFEKPKK 251
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP AL++ +++S+ I+LDPF GSG++ ++ R IE+ + Y
Sbjct: 252 ---NSDHPTMKPVALVAYPILNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKY 308
Query: 258 IDIATKRIASVQPLGNIELTVLTGKR 283
D+ KR + + G +
Sbjct: 309 CDVIVKRYIEQVGNSDGVFLLRDGSK 334
>gi|92116412|ref|YP_576141.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
gi|91799306|gb|ABE61681.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
Length = 436
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 57/255 (22%), Positives = 99/255 (38%), Gaps = 14/255 (5%)
Query: 21 DKIIKGN--SISVLEKLPAKSVDLIFA-DPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I + S + L + D PYN + + R + S + S
Sbjct: 169 HRLICADACSRKAYQALMKDCFASVAIPDQPYNDSIVKIVGRGKIKHREFARASGE--LS 226
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E + F R W+ C KP +V + ++ T + + N VW K+N
Sbjct: 227 PEQFVNFQRQWMELCSEFSKPGSIHFVFIDWRHLSEALTAGHAVYSELKNVAVWCKTNAG 286
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+G +++ HE ++ + + RS+ + R
Sbjct: 287 ---QGSFYRSQHELILVFK------NGDAPHQNNIELGRHGRNRSNVWTYAGVNTFRAGR 337
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
D +HPT KP L+ + ++ GDI+LDPF GSGT+ A+++ R GIE+ Y
Sbjct: 338 MDDLSVHPTVKPVGLVLDAIKDCSRRGDIVLDPFMGSGTTILAAERVDRRGFGIEIDPLY 397
Query: 258 IDIATKRIASVQPLG 272
+D+A +R
Sbjct: 398 VDVAIRRWQQFTGQD 412
>gi|154500925|ref|ZP_02038963.1| hypothetical protein BACCAP_04610 [Bacteroides capillosus ATCC
29799]
gi|150270255|gb|EDM97590.1| hypothetical protein BACCAP_04610 [Bacteroides capillosus ATCC
29799]
Length = 264
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 58/260 (22%), Positives = 84/260 (32%), Gaps = 39/260 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I L LP SVD++ DPPY N WD
Sbjct: 21 LFLMDGIEGLRSLPRHSVDMLLTDPPYGTTRNF----------------WDVPLPL---- 60
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP--NF 140
A + +KP+G + + + + + VW KS N
Sbjct: 61 ---PELWDAVKWAVKPDGAVLFFA---QCPYDKVLGASNLSMLRYEWVWYKSRCTGFLNA 114
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRSDWLIPICSGSERLRNK 198
R + L++ P K N SGSE
Sbjct: 115 RRAPLKKTENILVFYQKLPLYNPQFEQGKPYKKIAGNNGNSTNYGKFTRSGSGSEDGLRF 174
Query: 199 DGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G +HPTQKP AL + + T+PG++++D GS T+ A R FI
Sbjct: 175 PGNVLTFPAVQRTVHPTQKPVALCEYFIKTYTRPGEVVVDICAGSATTAVAALNTGRRFI 234
Query: 250 GIEMKQDYIDIATKRIASVQ 269
E Y AT+RI +
Sbjct: 235 CFETVPAYYAAATERIRVAR 254
>gi|61805940|ref|YP_214300.1| putative N6A methyltransferase [Prochlorococcus phage P-SSM2]
gi|61374449|gb|AAX44446.1| putative N6A methyltransferase [Prochlorococcus phage P-SSM2]
gi|265525147|gb|ACY75944.1| conserved hypothetical protein [Prochlorococcus phage P-SSM2]
Length = 306
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/303 (18%), Positives = 93/303 (30%), Gaps = 67/303 (22%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ ++ KSVDL+ DPPYN+ + S Y + + +
Sbjct: 1 MREVEDKSVDLVLIDPPYNIAKDDW--DNFGVTKKGYQPKEYSGVS---YYEWMQEVFIE 55
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-----NFWILNDIVWRKSNPMPNFRGRRFQ 146
RVLK +G+ W HN FR+ L N N IVW K G
Sbjct: 56 IDRVLKDSGSFWFF---HNDFRMMAELDRRITDNTNLEYRNFIVWNKLFSGCKQEGFLNG 112
Query: 147 NAHET-LIWASPSPKAKGYTFNYDALKAANEDV-----------------------QMRS 182
L + + + E +
Sbjct: 113 FVQVEGLNNFQKMAEYILFYTKKNLHLKLRERRLELGVKSSDISKEILSKTGNVTGWYSN 172
Query: 183 DWLIPICSGSERLRN------------------------------KDGEKLHPTQKPEAL 212
E ++ + H T KP L
Sbjct: 173 IETGKNYPTKETIKPITKHLGFTLDDLVPKFYNQRTHHSVWQYDFDSKKMGHLTPKPIEL 232
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
L +++ T GD +LD F GSG++ + R +I IE ++ Y++I+ +RI + P+
Sbjct: 233 LKNVILHCTDEGDTVLDCFGGSGSTAVACIETNRDYILIEREEKYVNISKERIQNAVPVE 292
Query: 273 NIE 275
+
Sbjct: 293 EVA 295
>gi|313898088|ref|ZP_07831627.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
gi|312957116|gb|EFR38745.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
Length = 416
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/251 (17%), Positives = 94/251 (37%), Gaps = 41/251 (16%)
Query: 21 DKIIKGNSIS------VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+++ G+S ++ + K +L+ DPPYN+ G + + ++
Sbjct: 167 HRLVCGDSTKPETYELLMNR---KKANLVVTDPPYNVNYEGSAGKIKNDNME-------- 215
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+A+ F + + +++V + + F++ +W+K
Sbjct: 216 ---NDAFYQFLLDAYTRMYESMADDASIYVFHADTEGLNFRRAFADAGFYLSGCCIWKKQ 272
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + ++ + L S K + YT + + + D
Sbjct: 273 SLVLGRSPYQWMHE-PCLFGWKKSGKHQWYTGRKETTIWEFDKPKKNGD----------- 320
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HPT KP LL+ +++S+ ++LDPF GSG++ ++ R IE+
Sbjct: 321 ---------HPTMKPIPLLAYPIMNSSMTNSLVLDPFGGSGSTLIACEQTGRICYTIELD 371
Query: 255 QDYIDIATKRI 265
+ + D+ KR
Sbjct: 372 EKFCDVIVKRY 382
>gi|254510906|ref|ZP_05122973.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
gi|221534617|gb|EEE37605.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
Length = 261
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/249 (22%), Positives = 92/249 (36%), Gaps = 29/249 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---NGQLYRPDHSLVDAVTDSWDKFSSF 78
++I G+++ V+ +L +VD + +DPPY L R + A D
Sbjct: 18 RLILGDAMQVMPEL--GAVDHLISDPPYEQSLHDAKNSAARRHRTDGRAELSGLDFAGID 75
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E D FT C NG V + + + ++ +W K + P
Sbjct: 76 EIRDEFTELSSAIC------NGWFVVFCTIEGVAKWADVINPSEMKYKRGCIWIKPDSTP 129
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
G A + + + +N + + D
Sbjct: 130 QLNG--QGPAQGAECFVTAWSGSGYARWNARGKRGVYTHLTNPPDRHG------------ 175
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HPT+KP L+ +++ T PG +ILDPF GSGT+ A R IG+E+ Y
Sbjct: 176 ----GHPTEKPWRLMKEMILDFTNPGQLILDPFMGSGTTLVAAALTGRRAIGVELNPKYF 231
Query: 259 DIATKRIAS 267
D+A R+A
Sbjct: 232 DMACLRVAK 240
>gi|88706703|ref|ZP_01104405.1| DNA methylase N-4/N-6 [Congregibacter litoralis KT71]
gi|88699024|gb|EAQ96141.1| DNA methylase N-4/N-6 [Congregibacter litoralis KT71]
Length = 438
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 10/221 (4%)
Query: 44 FADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
+DPPYN+ G + D + + + + E + F R LL V +
Sbjct: 194 ISDPPYNVPTQGHISVGDDAGHGDFAMAAGEM-TPEEFTDFLRQSLLGLSSVCGNGSLHY 252
Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ + +I + + + ++N VW K+N G +++ HE + A +
Sbjct: 253 IFMDWRHIRELLEAVDTVYAHLINLCVWAKTNGGM---GSFYRSQHELIAVAKKGSEPHI 309
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
A +V + E L +HPT KP A++ ++ ++
Sbjct: 310 NNVQLGANGRYRTNVWRYAGMNTFSVDREETLA------VHPTVKPTAMIIDAILDASNL 363
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
GDI+LD F GSGT+ A++ R G+E+ Y D+A +R
Sbjct: 364 GDIVLDGFLGSGTTLLAAEQTGRVCRGMELDPRYADVAIRR 404
>gi|317501088|ref|ZP_07959294.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
gi|316897475|gb|EFV19540.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
Length = 421
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/267 (16%), Positives = 90/267 (33%), Gaps = 34/267 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ V + + K +L+ DPPY + D +T D
Sbjct: 168 RHRVMCGDATSPEDVEKLMNGKKANLVLTDPPYGVSFK---------ASDGLTIQNDSLK 218
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F A L+ G + + + F + +W K++
Sbjct: 219 GEEFY-KFLLAAFKNMADHLEKGGAAYCFHADTEGLTFRKAFIDAGFHLAGVCIWVKNSL 277
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +Q HE +++ + + N D
Sbjct: 278 VLG--RSDYQWQHEPVLYGFLQNGKHPWYSDRKQTTIWNYDKP----------------- 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL + +S++ +++D F GSG++ ++L R +E+
Sbjct: 319 --KRNKDHPTSKPLDLLGYPIQNSSQENSVVIDTFGGSGSTLMACEQLNRVCYMMELDPK 376
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKR 283
Y + +R + G++
Sbjct: 377 YASVILRRYVEDTGDDENVYVIRNGEK 403
>gi|220930207|ref|YP_002507116.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
H10]
gi|220000535|gb|ACL77136.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
H10]
Length = 413
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 97/266 (36%), Gaps = 35/266 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + L +L+ DPPYN+ G + + D ++
Sbjct: 167 HRLVCGDSTKKDTFDVLMDGKAANLVVTDPPYNVNYEGTAGKIKN----------DNMAN 216
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
YD F A + + +++V + + F++ +W+K + +
Sbjct: 217 EAFYD-FLLAAFQNTEEAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV 275
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++Q+ L K Y+ E + SD
Sbjct: 276 LGRSPYQWQHE-PVLFGWKKKGKHLWYSDRKQTTIWEFEKPKKNSD-------------- 320
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP AL++ +++S+ I+LDPF GSG++ ++ R IE+ + Y
Sbjct: 321 ------HPTMKPVALVAYPIMNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKY 374
Query: 258 IDIATKRIASVQPLGNIELTVLTGKR 283
D+ KR + + G +
Sbjct: 375 CDVIVKRYIEQVGNSDGVFLLRDGSK 400
>gi|313618487|gb|EFR90489.1| DNA methylase [Listeria innocua FSL S4-378]
Length = 411
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/260 (18%), Positives = 93/260 (35%), Gaps = 39/260 (15%)
Query: 20 KDKIIKGNS-----ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+ ++I G+S VL + K +L DPPYN+ G + +
Sbjct: 166 RHRLICGDSTKEETYDVL--MNKKKANLCVTDPPYNVNYEGTAGKIKNDH---------- 213
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ + F + VL + +++V + F + F++ +W+K
Sbjct: 214 -MGNDVFYQFLLDAFINIEEVLADDASIYVFHADTEGFNFRKAFSDAGFYLSGCCIWKKD 272
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + ++Q+ L K + YT + + + D
Sbjct: 273 SLVLGRSPYQWQHE-PVLFGWKKKGKHQWYTGRKETTIWEFDKPKRNGD----------- 320
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HPT KP LL+ +++S+ I+LDPF GSG++ ++ R E+
Sbjct: 321 ---------HPTMKPIPLLAYPILNSSMTNTIVLDPFGGSGSTLIACEQSERICYTAELD 371
Query: 255 QDYIDIATKRIASVQPLGNI 274
+ + D+ KR
Sbjct: 372 EKFCDVIIKRYIEQVGTSKD 391
>gi|317127854|ref|YP_004094136.1| DNA methylase N-4/N-6 domain protein [Bacillus cellulosilyticus DSM
2522]
gi|315472802|gb|ADU29405.1| DNA methylase N-4/N-6 domain protein [Bacillus cellulosilyticus DSM
2522]
Length = 278
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/280 (18%), Positives = 86/280 (30%), Gaps = 50/280 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ +S + ++ ++DLI PPY ++ D K S++ +
Sbjct: 4 KLYNKDSTVDMNEIQTGTIDLIVTSPPYWNLIDYS-----------HPDQLGKGLSYKMF 52
Query: 82 DAFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------IFRIGTMLQNL- 121
+ L C RVLK + + V+G I +
Sbjct: 53 MKKIKKNLFECMRVLKEDAFICIVVGDVRTGEYKQNGRPRIYSLQSSLIEYFTEEMDFDL 112
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNA---------------HETLIWASPSPKAKGYTF 166
+ + K PN G E ++ K +
Sbjct: 113 FQHFIWEKFGVKKGNGPNIYGSVGTGKNKDKAVGPLLYSDLIMEHILVFRKPGKRSRGSI 172
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
N ++ + N HP P+ L R+++ + D
Sbjct: 173 AERLSHKENILMKEELVEWLNPVWKIHSPHNSK----HPATFPDELCKRLILLFSLKDDK 228
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+LDPF G+GT+ A L R+ G E+ YIDI I
Sbjct: 229 VLDPFAGTGTTLINALNLGRNAYGYEINPKYIDIIKSNIN 268
>gi|207109001|ref|ZP_03243163.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
HPKX_438_CA4C1]
Length = 175
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
W+ ++ PNG + + SY I I L+ F + + I W K+NPMP RR+
Sbjct: 7 EWIKHYAPLVNPNGCMIIFCSYRFISYIADFLEENGFVVKDFIQWVKTNPMPRNIHRRYV 66
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
E +WA + K NE P+ SG E+++ HPT
Sbjct: 67 QDTEFALWAVKKKAKWVF------NKPKNEKYLRPLILKSPVVSGLEKVK-------HPT 113
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
QK AL+ +I+ T P DI+LDPF GSGT+G K L R+FIGIE +++Y A KR+
Sbjct: 114 QKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERNFIGIESEKEYFQTAKKRLN 173
Query: 267 SV 268
Sbjct: 174 LF 175
>gi|294338307|emb|CBJ94346.1| Possible phage DNA methylase [Campylobacter phage CPt10]
Length = 221
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 33/245 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAY 81
II + +++LE + VDLI DPPY + G+ + + WD F + + +
Sbjct: 5 IINDDCLNILENIRN--VDLIITDPPYFVIPKGKKT------NNGYDNFKWDSFDNMDHF 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
FT+ W C + L + +++ S + + +
Sbjct: 57 LKFTKEWFDLCYKKLNNDSFMYIFWSQKYFSYGFEIFNPNRVLLWHYRNLVLGGNG---- 112
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
F +E + ++ + + K +
Sbjct: 113 --DFAYDYEPIFVIKKGNP-----------------KLIKGKHSSILNFTKPQSNFKADK 153
Query: 202 KLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+HPTQKP L+ ++ S K +ILDPF G+GT+ + L+ I IE + Y ++
Sbjct: 154 LVHPTQKPLKLIEYLISISNLKENAVILDPFGGAGTTALASNNLKYDCITIEKETGYCNL 213
Query: 261 ATKRI 265
R+
Sbjct: 214 INNRL 218
>gi|206889827|ref|YP_002248296.1| DNA methylase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741765|gb|ACI20822.1| DNA methylase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 283
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/267 (21%), Positives = 96/267 (35%), Gaps = 39/267 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
K+I G++ S ++++ +SV L+ PPY +A D F S+EA
Sbjct: 5 HKLIIGDATS-MKEIEDESVHLMITSPPY---------------FNAPFDYKGLFKSYEA 48
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNFWILNDIVWR 132
Y + RVLK + I + + Q+ F + I+W+
Sbjct: 49 YFEMIQKVAEETYRVLKKGRVAVINIDDMLIDGEKFTIVADVTKIFQSAGFKYRDRIIWK 108
Query: 133 KSNPMPNFRGRRFQNAHETLIWA--------------SPSPKAKGYTFNYDALKAANEDV 178
K + R + ++
Sbjct: 109 KPDGYLRISRRSGVLLQNPYPMYFYPDNLLESILIFQKGKFNYSSVPKDLKEESKIDKKE 168
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + W + L N EK PE L RI+ + G+ +LDPF GSGT+
Sbjct: 169 FLENKWYSTLWEMVNVLPNSSLEKD-IAAFPEELPYRIIKLFSYIGETVLDPFAGSGTTM 227
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
VA+KL R+ IGIE+ + + + K++
Sbjct: 228 KVARKLGRNSIGIEINKSLLSVIKKKL 254
>gi|154500910|ref|ZP_02038948.1| hypothetical protein BACCAP_04595 [Bacteroides capillosus ATCC
29799]
gi|150270273|gb|EDM97607.1| hypothetical protein BACCAP_04595 [Bacteroides capillosus ATCC
29799]
Length = 264
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 58/257 (22%), Positives = 82/257 (31%), Gaps = 39/257 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I L LP SVD++ DPPY N WD
Sbjct: 21 LFLMDGIEGLRSLPRHSVDMLLTDPPYGTTRNF----------------WDVPLPL---- 60
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP--NF 140
A + +KP+G + + + + + VW KS N
Sbjct: 61 ---PELWEAVKWAVKPDGAVLFFA---QCPYDKVLGASNLSMLRYEWVWYKSRCTGFLNA 114
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRSDWLIPICSGSERLRNK 198
R + L++ P K N SGSE
Sbjct: 115 RRAPLKKTENILVFYQKLPLYNPQFEQGKPYKKIAGNNGNSTNYGKFTRSGSGSEDGLRF 174
Query: 199 DGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G +HPTQKP AL + + T+PG+++ D GS T+ A R FI
Sbjct: 175 PGNVLTFPAVQRTVHPTQKPVALCEYFIKTYTRPGEVVADICAGSATTAVAALNTGRRFI 234
Query: 250 GIEMKQDYIDIATKRIA 266
E Y AT+RI
Sbjct: 235 CFETVPAYYAAATERIR 251
>gi|124008287|ref|ZP_01692983.1| site-specific DNA-methyltransferase [Microscilla marina ATCC 23134]
gi|123986236|gb|EAY26065.1| site-specific DNA-methyltransferase [Microscilla marina ATCC 23134]
Length = 678
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 14/185 (7%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL---------YRPDHSLVDAV 68
+ I+G+++ VL+ L + +I+ DPPYN + + D + +
Sbjct: 90 NLFIQGDNLEVLKTLQKSYLGKIKMIYIDPPYNTGNDFVYEDDFRDNLSHYIDKAGKNLH 149
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
++ D + F L + +LK +G ++V H + + ++ +
Sbjct: 150 SNKKDSGRFHATWLNFMYPRLKIAKSLLKDDGAIFVSIDDHEVHNLRALMNEIFGEENFM 209
Query: 129 IV--WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+ W++ N + HE L+ S S K + D K N D R W
Sbjct: 210 GILLWKRRQNADNRNQSNVSSDHEYLLLYSKSENTKFLGKSIDLSKYKNPDNDPRGPWAS 269
Query: 187 PICSG 191
SG
Sbjct: 270 IDLSG 274
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ SD + +G+ + G K+ KP L+ ++ +T DIILD F GS T+
Sbjct: 349 TWLESDNVGFTTNGTRDIAEVMGGKIFNFPKPVKLIQTLIKQATTSQDIILDFFAGSATT 408
Query: 238 GAVAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
+ R FI ++++++ + R A + + I K E
Sbjct: 409 AQAVTELNKEDGGNRKFILVQLEEETPPKSEARKAGYEHIAQIS-KDRIRKVIEKIQTEQ 467
Query: 292 LLVERGLIQPG---QILTNAQGNISATVCADGTLISGTE 327
+E ++Q Q+L N + + A D TL
Sbjct: 468 NSLEAEVMQLEDDLQMLKNEKDQLVAEQNIDLTLFDNDA 506
>gi|317498249|ref|ZP_07956548.1| DNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316894458|gb|EFV16641.1| DNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 438
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 112/266 (42%), Gaps = 32/266 (12%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S + V + + + DL+ DPPYN+ + D+
Sbjct: 172 RHRLMCGDSASELDVSQLMAGEEADLVITDPPYNVNYKDGSIKNDN-------------M 218
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+++ F + LA ++P ++ + ++ F + ++W K++
Sbjct: 219 DEGSFEVFLQNAFLAMFEFMRPGAAAYIFHADSEGLAFRRAFRDAGFKLAECLIWEKNSF 278
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED-------VQMRSDWLIPIC 189
+ + +Q HE +++ A + + ED + I
Sbjct: 279 VLG--RQDYQWRHEPILYGWKEGAAHYFIDDRSQDTVLLEDELDLESMKKQDLITYIHQI 336
Query: 190 SGSERLR------NKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
S++ + NK + +HPT KP AL+ +++ +S+KP +LD F GSG++ A+
Sbjct: 337 IDSQKDKTTVIFENKPTKNDVHPTMKPVALIGKLMKNSSKPEWNVLDLFGGSGSTLMAAE 396
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
+L R+ +E+ + + D+ +R +
Sbjct: 397 QLNRTAFLMELDEKFCDVIVRRWENY 422
>gi|77411475|ref|ZP_00787820.1| adenine specific DNA methyltransferase (mod) [Streptococcus
agalactiae CJB111]
gi|77162478|gb|EAO73444.1| adenine specific DNA methyltransferase (mod) [Streptococcus
agalactiae CJB111]
Length = 481
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/333 (18%), Positives = 103/333 (30%), Gaps = 79/333 (23%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY--RPDHSL---- 64
+ + + IIKGN++ L L V LI+ DPPYN + +Y R +HS
Sbjct: 20 TNFDDKDNLIIKGNNLLALHTLKDKYAGKVKLIYIDPPYNTGNDSFMYNDRFNHSTWLNF 79
Query: 65 -----------VDAVTDSWDKFSSFEAYD------------AFTRAWLLACRRVLKPNGT 101
+ V W E++ F + + + + T
Sbjct: 80 IYNRLSIANELLSEVGSIWLNIDDDESHYLKVLCDELFGRENFIGNIIWEKKFSPQNDAT 139
Query: 102 LWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ H + + + +N + + + N + ++ T+ S
Sbjct: 140 FFSDMHDHILVYCKNIDKFKINLLARTEKMNERYKNPDNDPRGPWSSSDLTVRTYSKEYD 199
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN----------------------- 197
T + + S + R+
Sbjct: 200 YPIETPSGKIINPPKGRCWRTSKENLSKLISQNRIWFGESGDNVPRLKRFLTDVKQGLTP 259
Query: 198 -----------------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+D E T KPE LL RI+ + GD++LD F GS
Sbjct: 260 GTIWKHQEVSHNQEARKEISRLFEDTEYDFSTPKPEKLLQRIIHIGSNEGDLVLDFFMGS 319
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
T+ AVA K+ R FIGIE ++ R+
Sbjct: 320 ATTQAVAMKMNRRFIGIEQMDYINTVSVPRLQK 352
>gi|77412079|ref|ZP_00788405.1| prophage LambdaW4, DNA methylase [Streptococcus agalactiae CJB111]
gi|77161884|gb|EAO72869.1| prophage LambdaW4, DNA methylase [Streptococcus agalactiae CJB111]
Length = 418
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/262 (18%), Positives = 98/262 (37%), Gaps = 39/262 (14%)
Query: 20 KDKIIKGN-----SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
K ++I G+ + L L K +LI DPPYN+ + + + D
Sbjct: 171 KHRVICGDSTKSENYEQL--LGDKKANLIVTDPPYNVDVEETAGKILN----------DN 218
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S + Y F ++ + +++V + ++ F++ +W+K+
Sbjct: 219 MSDRDFY-QFLFDMFTQVESHMEADASIYVFHANTEGLNFRKAFKDAGFYLSGSCIWKKN 277
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + ++ HE ++ + + D S
Sbjct: 278 SLVLGRSPYQW--QHEPCLFGWKQKGKHQWFSDRKQTTIWEYDRPKSS------------ 323
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
K HPT KP L++ + +S+ G ++ DPF GSG++ A + R GIE+
Sbjct: 324 -------KDHPTMKPIQLMAYPIQNSSMRGTLVFDPFLGSGSTLMAADQTGRVCYGIELD 376
Query: 255 QDYIDIATKRIASVQPLGNIEL 276
+ ++D+ KR ++ +
Sbjct: 377 EKFVDVIVKRYMESTSNRDVSV 398
>gi|290558935|gb|EFD92321.1| hypothetical protein BJBARM5_0955 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 217
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+K+ G+++ V+ LP++S+DLI+ DPP+ N + D + V D WD
Sbjct: 91 NKLYWGDNLHVMRTLPSESIDLIYIDPPFFSGRNYNMIFQDKNEVLTFEDIWDGG--LPT 148
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPN 139
Y + A L+ +R+LKP G+++V +H + + + + +
Sbjct: 149 YQVWLNARLVEMKRLLKPTGSIYVHLDWHASHYMKVEMDKIFGYDKFLNEIVWCYRGGGA 208
Query: 140 FRGRRFQNA 148
F G + A
Sbjct: 209 FTGWICKKA 217
>gi|57233564|ref|YP_180818.1| DNA methylase [Dehalococcoides ethenogenes 195]
gi|57224012|gb|AAW39069.1| DNA methylase [Dehalococcoides ethenogenes 195]
Length = 411
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/267 (18%), Positives = 99/267 (37%), Gaps = 39/267 (14%)
Query: 20 KDKIIKGNSIS-----VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+ +++ G+S VL L + +L+ DPPYN+ G + +
Sbjct: 166 RHRLVCGDSTKAETFAVL--LDDRKANLVITDPPYNVNYEGSAGKIKNDN---------- 213
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ +A+ F A V+ + +++V S + F++ +W+K
Sbjct: 214 -MANDAFYNFLLAAFQNTEAVMADDASIYVFHSDTEGLNFRRAFSDAGFYLSGCCIWKKQ 272
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + ++Q+ L S K + Y+ + + + D
Sbjct: 273 SLVLGRSPYQWQHE-PVLYGWKKSGKHQWYSGRKETTIWEFDKPKKNGD----------- 320
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HPT KP LL+ +++S+ ++LDPF GSG++ ++ RS IE+
Sbjct: 321 ---------HPTMKPIPLLAYPIMNSSMTNTLVLDPFGGSGSTLMACEQADRSCATIELD 371
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTG 281
+ + D+ KR G
Sbjct: 372 EKFCDVIVKRYIEQVGAAEKVFVQRDG 398
>gi|254507558|ref|ZP_05119691.1| DNA methylase [Vibrio parahaemolyticus 16]
gi|219549445|gb|EED26437.1| DNA methylase [Vibrio parahaemolyticus 16]
Length = 231
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 41/255 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVT 69
NS+ + + +++ L L SVDL+ DPPY + G R S A +
Sbjct: 11 NSLMN----LFQDDAVKWLSTLDTASVDLLITDPPYESLEKHRKIGTTTRLKVSK--ASS 64
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
+ W + + ++A L RVLK + ++ +F I + + + F I
Sbjct: 65 NQWFEIFPNDRFEAL----LSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPI 120
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
VW K + G ++ HE +++ + +D IP
Sbjct: 121 VWDKVSIGM---GYHYRARHEYILFFEK-------------------GKRKLNDLSIPDI 158
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+R+ + +PT+KP +LL ++V S++ G++++DPFFGSG++ +K L R F
Sbjct: 159 LTHKRV-----YRGYPTEKPVSLLEVLVVQSSREGELVVDPFFGSGSTLVASKNLNRQFK 213
Query: 250 GIEMKQDYIDIATKR 264
G ++ + +R
Sbjct: 214 GNDISSSAHEHIRQR 228
>gi|17545564|ref|NP_518966.1| hypothetical protein RSc0845 [Ralstonia solanacearum GMI1000]
gi|17427857|emb|CAD14547.1| putative dna modification methylase protein [Ralstonia solanacearum
GMI1000]
Length = 411
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/250 (20%), Positives = 88/250 (35%), Gaps = 34/250 (13%)
Query: 20 KDKIIKGN-----SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+ +++ G+ + L + D+ F DPPYN+ A+ +
Sbjct: 170 RHRLLCGDATVAENYD--RLLQGEPADMAFLDPPYNVNYANTAKDRQRGTSRAILNDNLG 227
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
++ A + CR G ++V S + + + I+W K+
Sbjct: 228 SGFYDFLLAALTPTIANCR------GGIYVAMSSSELDVLQAAFREAGGRWSTFIIWAKN 281
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ Y + A + D W
Sbjct: 282 TFTLGRA------------DYQRQYEPILYGWAEGAQRHWCGDRDQGDVWQ--------- 320
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
++ LHPT KP L+ R + +S++PGD++LD F GSGT+ A+K R IE+
Sbjct: 321 IKKPARNDLHPTMKPVELVERAIRNSSRPGDVVLDAFGGSGTTLIAAEKAARVARLIELD 380
Query: 255 QDYIDIATKR 264
Y D+ +R
Sbjct: 381 PKYADVIVRR 390
>gi|208434731|ref|YP_002266397.1| DNA methylase [Helicobacter pylori G27]
gi|208432660|gb|ACI27531.1| DNA methylase [Helicobacter pylori G27]
Length = 272
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 59/289 (20%), Positives = 101/289 (34%), Gaps = 56/289 (19%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
+ + +I + N ++ ++ KL +S+D+I PPY
Sbjct: 4 KIKPNIQSLLNNFYVDNCVNFMQHKLQNESIDMILTSPPY-------------------- 43
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH------NIFRIGTMLQNLNF 123
D +++ Y RV+K G + I ++ L
Sbjct: 44 ---DNLRNYQGYTFAFENIANEIFRVIKRGGVVVWIVGDKIKNGNKSLTSFRQALYFQQI 100
Query: 124 WI-LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-- 180
++D++ P R + NA+E + S K TFN A ++M
Sbjct: 101 GFNMHDVMIYAKKNTPFMRSNAYTNAYEYMFVLSK---GKPKTFNPLKEPTARNGMEMLV 157
Query: 181 --------------------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ + G N HP PE L ++S
Sbjct: 158 TNKGADAKNNKILKELKKEKTKNNIWHYAVGLGGSTNDKIAFNHPAIFPEQLALDHILSW 217
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ DI+ DP GSGT+ +A R+FIG+++ ++YI IA KR+ Q
Sbjct: 218 SNERDIVFDPMCGSGTTCKMAFLHNRNFIGVDISKEYIQIAQKRLQQYQ 266
>gi|294787786|ref|ZP_06753030.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
29453]
gi|294484079|gb|EFG31762.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
29453]
Length = 348
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/320 (17%), Positives = 106/320 (33%), Gaps = 77/320 (24%)
Query: 23 IIKGNSISVLEKLPA----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD---SWDKF 75
+ G++ L L +DLI+ DPPYN Q + S + +++
Sbjct: 19 LFSGDNFHALSVLLNSGYHGKIDLIYIDPPYNTQQIFTISDERISTISRTNHGITAYEDN 78
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
S Y F R L+ R +L G+++V + ++ + + R
Sbjct: 79 RSMANYLEFMRERLILMRELLSSCGSIYVHIDSKVGHYLKIIMDEVFGADNFKNDIARIK 138
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGY------------------------------ 164
+ NF R F N + +++ + + K +
Sbjct: 139 SNPKNFSRRAFGNEKDMVLFYAKNAKKNIFNNITIPLTDEDKIEMFQKVDEQGRRYNTVP 198
Query: 165 ------TFNYDALKAANEDVQMRSDWLIPIC----------------SGSERLR----NK 198
T N + + + +G R++ +
Sbjct: 199 IHAPGETQNGETGSMWRGMMPPKGRHWRSSPDDLDELDKHGLLEWSKNGVPRIKKFADDH 258
Query: 199 DGEKL-------------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
G+K+ +PT+K +L I+ S+ P I+LD F GSG++ A L+
Sbjct: 259 KGKKIQDIWRYKDPAYPIYPTEKNAEMLQMIIGQSSNPDSIVLDCFAGSGSTLWAAHCLQ 318
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R +IGI+ I +R
Sbjct: 319 RRWIGIDASDVAITTIQQRF 338
>gi|327400150|ref|YP_004340989.1| DNA methylase N-4/N-6 domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327315658|gb|AEA46274.1| DNA methylase N-4/N-6 domain protein [Archaeoglobus veneficus SNP6]
Length = 316
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/303 (21%), Positives = 116/303 (38%), Gaps = 43/303 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSF- 78
KII G+S +E++ +SV L+ PPY +++ + +R S + D W K +
Sbjct: 10 HKIIIGDSRK-MEEVDDESVHLVVTSPPYPMIEIWDEQFRKMDSRI---DDLWAKLDTIG 65
Query: 79 ----------EAYDAFTRA---WLLACRRVLKPNGTLWVIGS------------YHNIFR 113
+ YD C RVL G + + N R
Sbjct: 66 GTSEKNRIVQKIYDLMHENLAGVWKECYRVLVDGGIACINIGDATRKVNGLFRLFPNHAR 125
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRR--------FQNAHETLIW----ASPSPKA 161
+ + + F L I+W+K P ++G+ NA+ TL +
Sbjct: 126 VIEHCERIGFVTLPYILWKKPTTKPKYKGKGAFLGSGMLPPNAYVTLDCEFILIFRKGEP 185
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
+ + + A+ + R W I + + PE + R++ +
Sbjct: 186 RKFPPHDPMRYASKYTKEERDRWFTQIWDIVGTRQTLPEVERRVAAFPEEIPYRLIRMFS 245
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
GD +LDPF G+GT+ VA +L R+ IG E+ ++ + + +I Q +++ V
Sbjct: 246 IIGDTVLDPFVGTGTTMKVAMQLNRNSIGYEIDKNLLPVIKDKIGVSQSRLDMDFRVEII 305
Query: 282 KRT 284
+R
Sbjct: 306 ERP 308
>gi|285019387|ref|YP_003377098.1| DNA modification methylase [Xanthomonas albilineans GPE PC73]
gi|283474605|emb|CBA17104.1| putative dna modification methylase protein [Xanthomonas
albilineans]
Length = 418
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/251 (18%), Positives = 87/251 (34%), Gaps = 38/251 (15%)
Query: 21 DKIIKGNSISV------L-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+++ G++ L ++LP D+ F DPPYN+ + + +
Sbjct: 169 HRLLCGDATKADDYTQLLGDELP----DMAFTDPPYNVNYANAAKDKASNKSRPILND-- 222
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ E + F + K G +++ S + + + + I+W K
Sbjct: 223 --NLGEGFGGFLTEACMNILGCTK--GAVYIAMSSSELDTLQSAFRAAGGHWSTFIIWAK 278
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + Y + W
Sbjct: 279 NTFTMGRA------------DYQRQYEPILYGWREGIDHFWCGARDQGDVWQ-------- 318
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
++ LHPT KP L+ R + +S+K DI+LDPF GSG++ +K R IE+
Sbjct: 319 -IKKPHKNDLHPTMKPVELVERAVRNSSKTKDIVLDPFGGSGSTLIACEKCGRRARVIEL 377
Query: 254 KQDYIDIATKR 264
Y+D+ +R
Sbjct: 378 DPKYVDVIVRR 388
>gi|251795626|ref|YP_003010357.1| DNA methylase N-4/N-6 domain protein [Paenibacillus sp. JDR-2]
gi|247543252|gb|ACT00271.1| DNA methylase N-4/N-6 domain protein [Paenibacillus sp. JDR-2]
Length = 358
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 68/356 (19%), Positives = 114/356 (32%), Gaps = 111/356 (31%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD-------------HSLVDAVT 69
I+ G+ +V+ + + PPY + + D V A
Sbjct: 2 ILHGDCRTVMASMEPEQFHTCVTSPPYWGLRDYGIPGSDWPEVTYTPMAGLPQVTVPAWN 61
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-----------------HNI- 111
+ E + A + R+L+P GTLW+ N+
Sbjct: 62 GCLGLEPTPEMFVAHSVLVFREVWRLLRPEGTLWMNYGDSYAKSGLSGMGDPTIGERNLG 121
Query: 112 ----------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
+R+ LQ +++ D +W K N MP R AH
Sbjct: 122 GMKAIAKSIPIGLKPKDLIGIPWRVAFALQADGWYLRMDNIWNKPNCMPESVKDRPTKAH 181
Query: 150 ETLIWASPSPKAKGYTFNYDALKA-ANEDVQMRSDWLIPICSGSERL------------- 195
E + S + Y ++ +A+K N+ R + GS+R
Sbjct: 182 EYMFLLSK---SDRYYYDAEAIKEQMNDSSIARLSQDVENQQGSDRANGGSKKGMKAVGK 238
Query: 196 -----RNKDGEKL------------------------------------HPTQKPEALLS 214
RN + K+ H PE L+
Sbjct: 239 AYSFARNVNEGKVPGQVKQHRTDREDVEYYGTRNKRSVWTVATAQFTEAHFATFPEKLIE 298
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
+++ +LDPF GSGT+ VA + R IE+ + Y++IA +R A++QP
Sbjct: 299 PCILAGAPVDGKVLDPFGGSGTTLKVALENNRECTIIELGEQYVEIAERRTATLQP 354
>gi|261400646|ref|ZP_05986771.1| type III restriction-modification system EcoP15I, modification
subunit [Neisseria lactamica ATCC 23970]
gi|269209553|gb|EEZ76008.1| type III restriction-modification system EcoP15I, modification
subunit [Neisseria lactamica ATCC 23970]
Length = 568
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 20/209 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS-------LVDAVTD 70
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D + + +
Sbjct: 38 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPEELARLANIDE 97
Query: 71 SW--------DKF-SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
DK +S A+ F L R +LK +G +++ + ++ +
Sbjct: 98 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 157
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + P + F H+ LI + + +
Sbjct: 158 FGEGNFVEQIIWEKKFSPQNDAKYFSENHDYLICYAKNITELEIKLLPRTEGTNARYKNI 217
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D SG ++ ++ P
Sbjct: 218 DNDPRGAWTSGDLLRKDVQQSGIYTITTP 246
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ ++ + E + DG+ T KP L+ + L +T D+ILD F GSGT+
Sbjct: 303 IWKFNEVGHNQEASQELRKLFDGDSYFDTPKPIRLIVQTLRLTTNSDDLILDFFAGSGTT 362
Query: 238 GAVAKKLR-------RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
+L R +I +++ + + + R A + +I + + R +
Sbjct: 363 AHAVMQLNAEEQNGSRRYICVQLPEKTDEKSEARKAGYPTIFDITKARIEKAAAKIRAEY 422
>gi|229582710|ref|YP_002841109.1| DNA methylase N-4/N-6 domain protein [Sulfolobus islandicus
Y.N.15.51]
gi|228013426|gb|ACP49187.1| DNA methylase N-4/N-6 domain protein [Sulfolobus islandicus
Y.N.15.51]
Length = 283
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 59/282 (20%), Positives = 106/282 (37%), Gaps = 35/282 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I G+S + ++++ SV L+ PPY +A D D F S+ Y
Sbjct: 2 RVIFGDSRN-MKEVEDNSVGLVLTSPPY---------------YNAPFDFPDLFPSYADY 45
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNFWILNDIVWRK 133
+ RVL+ + + I + ++Q+L F I+W+K
Sbjct: 46 LSLLNGVGKEIFRVLEEGRVAVFVTADVRIHGELYPIVADLIKIMQSLGFKYQERIIWKK 105
Query: 134 SNPMPNFRGRRFQN-AHETLIWASP---------SPKAKGYTFNYDALKAANEDVQMRSD 183
R H ++ P K + + + R
Sbjct: 106 PEGYIRISRRSGVLIQHPYPLYYYPDNVYEDILVFKKPGKFIPRNKEESKIDVNKFQREK 165
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
W + + + L N K + PE L RI+ + GD +LDPF G+ T+ VA +
Sbjct: 166 WYLSVWEITNVLPNNKYSK-YTAPFPEELARRIITLYSYVGDTVLDPFAGTSTTLKVANE 224
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
L+R+ IG E+ + DI +RI G ++ ++ + +
Sbjct: 225 LKRNAIGYEIDLELKDIILERIGVNTLFGKPQIDIIEREDAK 266
>gi|221369906|ref|YP_002521002.1| DNA modification methylase [Rhodobacter sphaeroides KD131]
gi|221162958|gb|ACM03929.1| DNA modification methylase [Rhodobacter sphaeroides KD131]
Length = 458
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/287 (18%), Positives = 92/287 (32%), Gaps = 33/287 (11%)
Query: 21 DKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V+ +L L+F PPY Q + WD
Sbjct: 175 HRLICGDATDPTVVARLMDGAQASLMFTSPPYAQQRDYG-------AAKEKVGDWDALMQ 227
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-NDIVWRKSNP 136
F A + ++L G + G + + W VW +
Sbjct: 228 G----VFVAAPVTEAAQLLVNLGLVHRDGEWIPYWEGWLDWMRAQDWRRFGWYVWDQGPG 283
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-----------------DVQ 179
+P R +HE + + P+ T
Sbjct: 284 LPGGWNGRLAPSHEFIFHFNRQPRKPNKTVESKHAGETLGGGGLRGADGTVHRKTGFGNA 343
Query: 180 MRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
++S + R + G HP P AL+ +L + T PGD++ +PF GSGT
Sbjct: 344 IQSHRIPDSVFRIMRHKGGLGAAGSHPAVFPVALVEAVLKAFTDPGDLVFEPFCGSGTQL 403
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
A++ R +E+ Y D+A +R + +T R
Sbjct: 404 IAAERTGRRCSAVELDPVYCDVAVRRWETATGRAAHRITEQEEARKP 450
>gi|313668401|ref|YP_004048685.1| type III restriction-modification system modification protein
[Neisseria lactamica ST-640]
gi|313005863|emb|CBN87319.1| putative type III restriction-modification system modification
protein [Neisseria lactamica 020-06]
Length = 568
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 20/209 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 38 NLLICGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELARLANIDE 97
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +L+ +G +++ + ++ +
Sbjct: 98 DEAARILDFTDKGSNSHSAWLTFMYPRLYVARELLREDGVIFISIDDNEAAQLKLLCDEV 157
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + P + F H+ LI + + +
Sbjct: 158 FGEGNFVEQIIWEKKFSPQNDAKYFSENHDYLICYAKNITELEIKLLPRTEGTNARYKNI 217
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D SG ++ ++ P
Sbjct: 218 DNDPRGAWTSGDLLRKDVQQSGIYTITTP 246
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ ++ + E + DG+ T KP L+ + L +T P D+ILD F GSGT+
Sbjct: 303 IWKFNEVGHNQEASQELRKLFDGDSYFDTPKPIRLIVQTLRLTTNPDDLILDFFAGSGTT 362
Query: 238 GAVAKKLR-------RSFIGIEM 253
+L R +I +++
Sbjct: 363 AHAVMQLNAEGQNGSRRYICVQL 385
>gi|300710254|ref|YP_003736068.1| modification methylase [Halalkalicoccus jeotgali B3]
gi|299123937|gb|ADJ14276.1| modification methylase [Halalkalicoccus jeotgali B3]
Length = 343
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/287 (18%), Positives = 100/287 (34%), Gaps = 28/287 (9%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + G++ + LP +SVDL+ PPY +++ ++ ++ + + +
Sbjct: 1 MRTEHALHVGDARDL--ALPDESVDLVVTSPPYPMIEMWDDVFAGLDPGIEEMLAAGEGE 58
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLNF 123
+FE+ A A RVL+ + +Y N RI ++ F
Sbjct: 59 RAFESMHAILDAVWDELERVLREGAIACINVGDATRTVENTFQTYPNHVRITEAFRDRGF 118
Query: 124 WILN---DIVWRKSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGYTF---NYDALK 172
L S G NA HE ++ + Y++
Sbjct: 119 VSLPGILWRKPTNSTAKFMGSGMVPTNAYPTLEHEHVLIFRKGGPRRFEPHLESRYESAY 178
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
E + SD I +RL + E+ P L R++ + D + DPF+
Sbjct: 179 FWEERNRWFSDLWSDIKGVDQRLDGEARER--SGAFPFELPYRLINMFSIHEDTVCDPFW 236
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
G+GT+ A R +G E+ ++ R+A + +
Sbjct: 237 GTGTTTLAAMVAGRESVGHELDPGLVEAFDGRLADLPAFSREVIENR 283
>gi|76803974|gb|ABA55917.1| hemagglutinin associated protein [Vibrio sp. DAT722]
Length = 224
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 29/244 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ +++ L+ L SVDL DPPY L + + S +++ S
Sbjct: 5 YQMDAVDWLKTLDDSSVDLFITDPPYE-SLEKHRKIGTTTRLKESKSSSNQWFSIFPNTR 63
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
F RVLK ++ +F + + + F IVW K +
Sbjct: 64 F-EELFTEIYRVLKKGSHFYLFCDQETMFVAKPIAEQVGFKFWKPIVWDKCAIGMGY--- 119
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
Y Y+ + + + +D IP +R+ +
Sbjct: 120 -------------------HYRARYEFILFFEKGKRKLNDLSIPDVLEYKRVW-----RG 155
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+PT+KP LL ++ S+ D++ D FFGSG++ A L R ++G ++ +
Sbjct: 156 YPTEKPVDLLEVLIKQSSSEHDVVADSFFGSGSTLIAANNLSRKYLGCDVSDSAHEHFNN 215
Query: 264 RIAS 267
R+ +
Sbjct: 216 RLKT 219
>gi|237742131|ref|ZP_04572612.1| chromosome partitioning protein parB [Fusobacterium sp. 4_1_13]
gi|229429779|gb|EEO39991.1| chromosome partitioning protein parB [Fusobacterium sp. 4_1_13]
Length = 438
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/292 (20%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 21 DKIIKGNS--ISVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + ++KL V DL+ DPPYN+ D+ + D +S
Sbjct: 161 HRLMCGDSTKLEDVKKLVNNEVIDLLVTDPPYNV---------DYQAANGQKIKNDNMNS 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-- 135
Y F A+ V++ ++ + L F I ++W K+
Sbjct: 212 ENFY-RFLLAFYKNAYEVMRAGAGFYIFHADSETRAFRGALTEAGFKISQCLIWVKNQFI 270
Query: 136 ---------PMPNFRGRRFQNAHETLIWASPSPKAKGY-TFNYDALKAANEDVQMRSDWL 185
P G + H + + + Y + K E ++ +
Sbjct: 271 LSRQDYNWKHEPCLYGWKEGVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILEEY 330
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
I ++ L+N +HPT KP L+S+++ +S+K +LD F GSG++ A++L+
Sbjct: 331 TTIIRENKPLKND----IHPTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLK 386
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
R +E + Y D+ KR A + ++ +L +T + G
Sbjct: 387 RKAFLMEFDEKYADVIVKRYAEM---DKEDIKLLRNGKTYNWNEVKSELYAG 435
>gi|295681318|ref|YP_003609892.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
gi|295441213|gb|ADG20381.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. CCGE1002]
Length = 439
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 32/247 (12%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S+ + L DLI DPPYN+ G+ + DA+ +
Sbjct: 194 HRVMCGDSLRAENVSALMGGYLADLIITDPPYNVAYVGKTDKRMTIQNDAM-----QAGE 248
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F + + A K ++V + L + F + VW K + +
Sbjct: 249 FSRFLLTAHQTMFAAA---KGGAGIYVFHADTEGLAFRGALLDAGFKLAQCCVWVKQSLV 305
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + HE +++ + + + D R+D
Sbjct: 306 LGRQDYHW--QHEPVLYGWKPTGKHRWYADRSQSTVWSFDRPARND-------------- 349
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP A++ + +S++ GD++LD F GSGT+ +K R +E+ Y
Sbjct: 350 -----LHPTMKPVAVVEYPIQNSSRDGDLVLDTFGGSGTTLIACEKCGRRARLLELDPVY 404
Query: 258 IDIATKR 264
D+ R
Sbjct: 405 CDVIVAR 411
>gi|313895718|ref|ZP_07829274.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975844|gb|EFR41303.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
Length = 421
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 43/280 (15%)
Query: 20 KDKIIKGNSISVLEKLPA--------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
K ++I G+S LP + V+L+ DPPY + L + +
Sbjct: 169 KHRVICGDS-----TLPETYERLLGGEKVNLVCTDPPYFVALESSSGKIKN--------- 214
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D + +AY F ++ A + + +++V + ++ F + +VW
Sbjct: 215 -DDLNDKDAY-EFLKSAFTAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVW 272
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+K + ++ HE +IW + D
Sbjct: 273 KKDRLV--LTRTDWKYIHEPIIWGWRKDGRHRW----------------YGDQKQTTVFA 314
Query: 192 SERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+R+++ K HP+ KP L++ ++ T+ I+LD F GS ++ ++L R G
Sbjct: 315 FDRIKDSKKDGCGHPSSKPVPLIAYLIKQCTQTNGIVLDGFLGSASTLIACEQLNRICYG 374
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
+E++ ++D+A +R + ++ + P
Sbjct: 375 VELEPKFVDVAVERYIQSKDGNAEDVFLERDGERIPYADV 414
>gi|295100556|emb|CBK98101.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
Length = 241
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/259 (20%), Positives = 86/259 (33%), Gaps = 35/259 (13%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ I L LP SVD++ DPPY N WD
Sbjct: 2 DGIEGLRSLPKHSVDMLLTDPPYGTTRNY----------------WDVPLPL-------P 38
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
A + +KPNG + + + ++ + N +
Sbjct: 39 ELWEAVKWAVKPNGAV-LFFAQCPFDKVLGASNLAMLRYEWIWYKERGTGFLNANRAPLK 97
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE--RLRNKDGEK-- 202
+ L++ SP + S++ GSE R G
Sbjct: 98 KSENILVFYQKSPVYNPQFTYGKPYTRVHSRSGTSSNYGKFERQGSESNDGRRYPGNVLF 157
Query: 203 -------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+HPTQKP L ++ + T+PG+++ D GSGT+ A R F+ E
Sbjct: 158 VPTVSGGIHPTQKPVELCEYLIRTYTRPGELVADICAGSGTTAIAAINTERRFVCFETAP 217
Query: 256 DYIDIATKRIASVQPLGNI 274
+ A++RI + Q + +
Sbjct: 218 AFYAAASERIRAAQAVKSS 236
>gi|297374639|emb|CBL42926.1| DNA methylase N-4/N-6 domain protein [Candidatus Magnetobacterium
bavaricum]
Length = 382
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 19/206 (9%)
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
AY L+ RRVLK G++++ + ++ +
Sbjct: 3 AYLVMMCVRLIELRRVLKDTGSIYLHCDPTASHYLKIVMDAIFGVKNFRNEIVWCYRGGG 62
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYT-------------FNYDALKAANEDV------QM 180
+ F H+ ++ S + Y+ DA+ ++
Sbjct: 63 TPRKDFGRRHDVILRYSKTNDYLFYSDPVRVPYQAEGIERTDDAMWGKHKGTDKVYKPHP 122
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
S + N + TQKP LL RI+ +S+K GD++LDPF G GT+ AV
Sbjct: 123 LGKVPEDWWSMNILNANDPERLGYQTQKPGTLLERIVNASSKEGDLVLDPFCGCGTTVAV 182
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIA 266
A+KL R +IGI++ ++ R+
Sbjct: 183 AQKLNRQWIGIDITHLATNLIKLRLK 208
>gi|212702853|ref|ZP_03310981.1| hypothetical protein DESPIG_00885 [Desulfovibrio piger ATCC 29098]
gi|212673715|gb|EEB34198.1| hypothetical protein DESPIG_00885 [Desulfovibrio piger ATCC 29098]
Length = 454
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 103/273 (37%), Gaps = 43/273 (15%)
Query: 21 DKIIKGNSI------SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+++ G++ ++++ + A D+++ DPPYN+ G+ + DA++D
Sbjct: 166 HRLLCGDATLPESYAALMQGMEA---DMVWTDPPYNVAYEGKAGK---IKNDAMSD---- 215
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ + AF + ++ G ++V + + + + +
Sbjct: 216 ----QDFAAFLQRVFRQMVTGVRKGGAVYVAHADAGVLGVTFRQAFIQAGLKLASCLIWR 271
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSDWLIPICSG 191
+ HE +++ + + + V+ D
Sbjct: 272 KNSGVLSRADYHWQHEPILYGWRPGAPHVWFGDRKQTTVQDAFPAAVREDGDVPCWHIMD 331
Query: 192 SERLRNKDGEKLH--------------------PTQKPEALLSRILVSSTKPGDIILDPF 231
ER+ G+ +H PT KP AL+ R+L +S+K G +ILDPF
Sbjct: 332 GERIVRISGKDVHVEVLAGSVFCEPKPQRNSHHPTMKPVALIERMLTNSSKRGGMILDPF 391
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
GSG++ ++ R +E+ ++D+ +R
Sbjct: 392 GGSGSTLMACERQDRICRTMELDPRFVDVIIRR 424
>gi|218885335|ref|YP_002434656.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756289|gb|ACL07188.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 399
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 103/296 (34%), Gaps = 57/296 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---WDKFSSFE 79
+++G+++ + KSV+ + PY G D V + + E
Sbjct: 102 LVEGDALEKIRSFSDKSVNCVVTSTPYW----GLRLYKDSFFVRWGDGELCPFGHEQTPE 157
Query: 80 AYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIF-------------------------- 112
++ + L A VL +G+ W I N
Sbjct: 158 SFIRHSVEVLSALYNVLTDDGSVWWNIMDSFNTRTQIRGSSAEALQAMQGKDSRGWADHA 217
Query: 113 ---------------------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RI + +++ I W K++ +P + R E
Sbjct: 218 CRRYSAGHSYLKDGEQCMIPSRIAERASRVGYYVKAVITWAKTSSLPEPQTSRVSRNLEY 277
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
++ + K Y +L +A S S L +G H Q P A
Sbjct: 278 VLHLTKVRTPKFDKEVYRSLPSALGGRNNGS--ETDKLSDVWVLPTSNGRHGHGAQFPVA 335
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
L +R + +T D++LDPF G+G S A L+R FIGI+ +YID+A KRI
Sbjct: 336 LPARCIALATNANDLVLDPFVGAGNSAIAALALKRKFIGIDTSSEYIDVAKKRIKE 391
>gi|70607700|ref|YP_256570.1| modification methylase [Sulfolobus acidocaldarius DSM 639]
gi|68568348|gb|AAY81277.1| modification methylase [Sulfolobus acidocaldarius DSM 639]
Length = 286
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/281 (21%), Positives = 107/281 (38%), Gaps = 43/281 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+I G+S + + ++ KS+ L+ PPY +A D D F S+E Y
Sbjct: 3 KVIFGDSRN-MSEVEDKSIGLVLTSPPY---------------YNAPFDFPDLFPSYEEY 46
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS---------YHNIFRIGTMLQNLNFWILNDIVWR 132
R RVL +G + V + Y + + ++ +L F I+W+
Sbjct: 47 LNLLRDVGKELYRVL-DDGRVAVFVTSDVRIEGVLYPIVADLIRIMTDLGFKYQERIIWK 105
Query: 133 KSNPMPNFRGR-------------RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
K R N +E ++ K + + +
Sbjct: 106 KPEGYIRISRRSGVLIQHPYPLYYYPDNVYEDIVVFKKPGK---FHTTNQEKSKIDVNKF 162
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ W + + + L N K PE L +RI+ + GD +LDPF G+GT+
Sbjct: 163 QKEKWYLNVWEITNVLPNNKYSK-FTAPFPEELANRIVTLYSYVGDTVLDPFAGTGTTLY 221
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
VA+ L R+ +G E+ + ++ +R+ N E+ +
Sbjct: 222 VARILSRNAVGYEIDLELKEVIRERVGHPTLFDNHEVVFVE 262
>gi|255012035|ref|ZP_05284161.1| MthZ [Bacteroides fragilis 3_1_12]
gi|313149875|ref|ZP_07812068.1| DNA methylase [Bacteroides fragilis 3_1_12]
gi|311977222|gb|ADQ20483.1| M1.BfaI [Bacteroides fragilis]
gi|313138642|gb|EFR56002.1| DNA methylase [Bacteroides fragilis 3_1_12]
Length = 364
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 23/276 (8%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
++ + ++DL+ PPY + + + +FE
Sbjct: 10 DASQHMTSTEDNTIDLVVTSPPYPMIEMWDEIMAKQNPEITDNLESNPEMAFELMHRELD 69
Query: 87 AWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNFWILNDIVWRKS 134
C RVLK G L V Y+N RI + F L +I+WRK
Sbjct: 70 KVWKECFRVLKVGGFLCVNIGDATRTINDNFTLYNNHSRISKACIEIGFVGLPNIIWRKQ 129
Query: 135 NPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+PN G HE ++ K + + + + +
Sbjct: 130 TNVPNKFMGSGMLPCGAYVTLEHEWILIFRKGSKREYKKADAKLNRMKSSFFWEERNVWF 189
Query: 187 PICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ + K +K P + R++ ++ GD ++DPF G+GT+ A
Sbjct: 190 SDVWEIKGTKQKIQKKTSRERSAAYPFEVPYRLINMFSQKGDTVMDPFLGTGTTTQAAML 249
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
L R+ G E+ ++ I + I S++ L
Sbjct: 250 LGRNSCGYEIDPNFETIIRESIDSLKLDSCNNLIKQ 285
>gi|309781003|ref|ZP_07675742.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
5_7_47FAA]
gi|330824600|ref|YP_004387903.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
denitrificans K601]
gi|308920306|gb|EFP65964.1| prophage LambdaMc01, DNA methyltransferase [Ralstonia sp.
5_7_47FAA]
gi|329309972|gb|AEB84387.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
K601]
Length = 471
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 51/291 (17%), Positives = 88/291 (30%), Gaps = 55/291 (18%)
Query: 21 DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V + + L F PPY Q +
Sbjct: 177 HRLICGDATDRDVVAALMQGDAARLCFTSPPYGNQRDYTSG------------------G 218
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILNDI 129
+D R + +G + V I L + +
Sbjct: 219 IADWDGLMRGVF--AHLPMAGDGQVLVNLGLIHRDNEVIPYWDAWLGWMRQQGWRRFAWY 276
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALK------------- 172
VW + MP RF + E + K
Sbjct: 277 VWDQGPGMPGDWAGRFAPSFEFVFHFNRESRKPNKIVPCKHAGQESHLRADGSSTAMRGK 336
Query: 173 ------AANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
++ + + + R + K G+ + HP P AL ++ + T GD
Sbjct: 337 DGEVGGWTHKGLPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGD 396
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
I+ +PF GSGT+ A++ R +E+ Y+D+A KR P + L
Sbjct: 397 IVFEPFGGSGTTMLAAERTGRICCSVEIAPQYVDVAIKRFQQNHPGIPVTL 447
>gi|289580416|ref|YP_003478882.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
gi|289529969|gb|ADD04320.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
Length = 330
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/291 (16%), Positives = 93/291 (31%), Gaps = 53/291 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYN------LQLNGQLYRPDHSLVDAVTDSWDK 74
++ +G++ L +P +S++L+ PPY G+ D +A D D+
Sbjct: 54 HELHRGDARD-LSMVPEESIELVVTSPPYFDIKDYENGTGGENQLGDIEGYEAFNDEIDR 112
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY----------HNIFRIGT-------- 116
C L P G + ++ H + +
Sbjct: 113 -------------VWEQCYEKLVPGGRMCIVVGDVLRSRSDYGRHRVLPLHATIQERCTD 159
Query: 117 ---------MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + L + P G +N E ++ + T
Sbjct: 160 IGFDNLAPIIWYKIGNSSLEAGGNARFLGKPYEPGAVIKNDIEYILLFRKPGDYRSPTVA 219
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
L D + + + + HP P L R++ + D +
Sbjct: 220 ERVLSLIEADRHQT--MFRQLWTDI----TGEAQTDHPAPYPATLAERLIRMFSFVTDTV 273
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
LDPF GSG++ A + R I +E++++Y +IA +R+ + V
Sbjct: 274 LDPFAGSGSTAVGATRCGRDSISVELEEEYFEIAKRRVERERGTLTNYRNV 324
>gi|304436375|ref|ZP_07396351.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304370644|gb|EFM24293.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 421
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 50/280 (17%), Positives = 106/280 (37%), Gaps = 43/280 (15%)
Query: 20 KDKIIKGNSISVLEKLPA--------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
K ++I G+S LP + V+L+ DPPY + L + +
Sbjct: 169 KHRVICGDS-----TLPETYERLLGGEKVNLVCTDPPYFVALESSSGKIKN--------- 214
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D + +AY F ++ A V+ + +++V + ++ F + +VW
Sbjct: 215 -DDLNDKDAY-EFLKSAFTAFHSVMAADASIYVFYATAKARIFHDAYEDAGFKVGAGLVW 272
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+K + ++ HE +IW + D
Sbjct: 273 KKDRLV--LTRTDWKYIHEPIIWGWRKDGRHRW----------------YGDQKQTTVFA 314
Query: 192 SERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+R+++ K HP+ KP L++ ++ T+ ++LD F GS ++ ++L R G
Sbjct: 315 FDRIKDSKKDGCGHPSSKPVPLIAYLVKQCTQTNGVVLDGFLGSASTLIACEQLGRICYG 374
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
+E++ ++D+A +R + ++ + P
Sbjct: 375 VELEPKFVDVAVERYIQSKDGNAEDVFLERDGERIPYADV 414
>gi|124485590|ref|YP_001030206.1| hypothetical protein Mlab_0768 [Methanocorpusculum labreanum Z]
gi|124363131|gb|ABN06939.1| DNA methylase N-4/N-6 domain protein [Methanocorpusculum labreanum
Z]
Length = 262
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/264 (17%), Positives = 84/264 (31%), Gaps = 41/264 (15%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + + L VD+I PPYN+ ++D Y + R
Sbjct: 2 DCVEGMSTLTPGMVDVIVTSPPYNIGKAYT--------------TYDDTIPRNTYLKWMR 47
Query: 87 AWLLACRRVLKPNGTL-----------WVIGSYHNIFR-----IGTMLQNLNFWILNDIV 130
RVL +G+ W+ FR + M+ + L D
Sbjct: 48 TVAEESYRVLSDHGSFYLNIGGSLKDPWIPIDVAQAFREQGFVLQNMIHWIKSIALPDEG 107
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK-------GYTFNYDALKAANEDVQMRSD 183
+ P R + HE + + + + + + + + D
Sbjct: 108 VAAGHYKPINSKRYHNDCHEFIFHFTKNGTVQIDRLATGVPYQDKSNVNRWGGEKRDLRD 167
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAK 242
E +R + HP P L + +++DPF G G + A
Sbjct: 168 RGNTWFIPYETIR---ESRPHPATFPIQLPVMCIKDHGLDKCRLVMDPFMGIGNTAIAAI 224
Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
+L FIG E+ + Y +A +R++
Sbjct: 225 RLGVPFIGFEIDEGYRKVANERVS 248
>gi|254441811|ref|ZP_05055304.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
gi|198251889|gb|EDY76204.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
Length = 398
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 86/232 (37%), Gaps = 13/232 (5%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +I G++ + + ++F DPPYN+ + G + + ++ +
Sbjct: 172 KHRIFCGDARSADDFVALVGDGKAAMVFTDPPYNVPIVGHVSGKGKACHREFHEASGEM- 230
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + AF L + +V + ++ + Q LN VW K+N
Sbjct: 231 TRSGFAAFLDEVLANTAHSCRDGAISFVCMDWRHMGELLEAGQRAFDAYLNLCVWAKTNG 290
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G +++ HE + + + R++ + R
Sbjct: 291 GM---GSLYRSQHELVFVFRKG------KAQHRNNVQLGRFGRNRTNVWTYAGVNTFREG 341
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ HPT KP A++ ++ TK G+++LDPF G G + A++ R
Sbjct: 342 RMEELSAHPTAKPVAMVKDAILDVTKRGEVVLDPFLGGGATLIAAEQSGRHC 393
>gi|227498320|ref|ZP_03928470.1| methylase [Acidaminococcus sp. D21]
gi|226903782|gb|EEH89700.1| methylase [Acidaminococcus sp. D21]
Length = 412
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/275 (17%), Positives = 104/275 (37%), Gaps = 37/275 (13%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I G++ + + + K +L+ DPPYN+ + + + D
Sbjct: 171 EHRVICGDATLPETYIRLMDGKKANLVLTDPPYNVDVEETAGKIKN----------DNMP 220
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F + + + ++ + +++V + ++ F++ +W+K+
Sbjct: 221 DDKFY-QFLFSAFVNMEQNMERDASIYVFHADTQGLNFRKAFKDAGFYLSGCCIWKKNAL 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE ++ + + D S
Sbjct: 280 VLGRSPYQW--QHEPCLFGWKLNGKHQWYSDRKQTTIWEYDRPKAS-------------- 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP L++ + +S+ I+LDPF GSG++ ++ R GIE+ +
Sbjct: 324 -----KEHPTMKPVVLMAYPIENSSMSHCIVLDPFLGSGSTLMACQQTDRICYGIELDEK 378
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
++D+ KR S G+ + VL P
Sbjct: 379 FVDVIVKRYISEC--GDEGVFVLRKNEKIPYDKVQ 411
>gi|298483961|ref|ZP_07002131.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D22]
gi|298269870|gb|EFI11461.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D22]
Length = 256
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 90/266 (33%), Gaps = 47/266 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ K + + V+ L S+DL+ DPP+ + + WDK
Sbjct: 11 TLYKADCLEVMPLLSESSIDLVLCDPPFGITAS----------------QWDKI------ 48
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF- 140
F++ W RRV K N + GS + D VW KS
Sbjct: 49 IPFSKMW-EEIRRVRKDNAPTALFGSEPFSSLLR---CGNLAEFKYDWVWEKSKASNFLL 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD- 199
++ AHE + Y + + + S+W + RN++
Sbjct: 105 AKKQPLKAHELISIF--CNGRTPYYPIMEEGEPYENRTKRGSNWTGVNKVPNPTFRNENK 162
Query: 200 -----------------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
G+ +H QKP ALL ++ + TK GD +LD GS ++
Sbjct: 163 GTRYPRSVKYFKTAESEGKTIHVNQKPVALLKYLIKTYTKEGDTVLDFASGSMSTAIACI 222
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
R I IE + +RI +
Sbjct: 223 HTNRKCICIEKDDMHFLRGEERIRNE 248
>gi|256840184|ref|ZP_05545692.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
gi|256737456|gb|EEU50782.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
Length = 674
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 130/362 (35%), Gaps = 92/362 (25%)
Query: 1 MSQKNSLAINENQNSI---FEWKDKIIKGNSISVLEKLPAK-----------SVDLIFAD 46
+ K++ + + +N EW +++I G+++ V++ L A VDLI+ D
Sbjct: 43 LPAKDTSGLWKGKNEQVINKEWMNRLIYGDNLLVMQALLAGDETTGLPSLRGKVDLIYID 102
Query: 47 PPYNLQLNGQLY----------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
PP++ + + + +P A +D+W +Y L+ R +L
Sbjct: 103 PPFDSKADYRTKINLPGVDIEQKPTVIEQFAYSDTW--QDGTVSYLKMLYPRLVLMRELL 160
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNL--NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
G+++V +H + ++ ++ N+I+W+ + + + +++ +H+T+ +
Sbjct: 161 SEKGSIYVHIDWHIGAYLKVIMDDVLGKENFKNEIIWKSAVGDTSNKNKKYIKSHDTIFF 220
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI-------------------------- 188
+ + + + N++ D
Sbjct: 221 YNKIQGIQVWNDIFQEYSEKNKNAYRYEDEKGTYRFVPIDNPGGGGYIYDLGYGENIPTN 280
Query: 189 -----------CSGSERLRNKDGE--KLHPTQKPEAL----------LSRILVSSTKPGD 225
S L + G+ K QK + L R LV +T+ +
Sbjct: 281 GYRMPKETALKWIESGELIVEKGKCPKRKLYQKTDGLRCTDIWTDINHERGLVYATQKPE 340
Query: 226 IILD---------------PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
+L+ F GSGT+ AVA++L R +I ++ + + KR +
Sbjct: 341 KLLERIIKASSDEGDLVCDFFGGSGTTAAVAERLGRRWITTDIGKPATLVMRKRFIDQEV 400
Query: 271 LG 272
Sbjct: 401 KP 402
>gi|15611823|ref|NP_223474.1| putative type II DNA modification enzyme (methyltransferase)
[Helicobacter pylori J99]
gi|4155312|gb|AAD06327.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 58/289 (20%), Positives = 101/289 (34%), Gaps = 56/289 (19%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
+ + +I + + ++ ++ KL +S+D+I PPY
Sbjct: 4 KIKPNIQSLLNNFYVDSCVNFMQHKLQNESIDMILTSPPY-------------------- 43
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH------NIFRIGTMLQNLNF 123
D +++ Y RV+K G + I ++ L
Sbjct: 44 ---DNLRNYQGYTFAFENIANEIFRVIKKGGVVVWIVGDKIKNGNKSLTSFRQALYFQQI 100
Query: 124 WI-LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM-- 180
++D++ P R + NA+E + S K TFN A ++M
Sbjct: 101 GFNMHDVMIYAKKNTPFMRSNAYTNAYEYMFVLSK---GKPKTFNPLKEPTARNGMEMLV 157
Query: 181 --------------------RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ + G N HP PE L ++S
Sbjct: 158 TNKGADAKNNKILKELKKEKTKNNIWHYAVGLGGSTNDKIAFNHPAIFPEQLALDHILSW 217
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ DI+ DP GSGT+ +A R+FIG+++ ++YI IA KR+ Q
Sbjct: 218 SNERDIVFDPMCGSGTTCKMAFLHNRNFIGVDISKEYIQIAQKRLQQYQ 266
>gi|285019155|ref|YP_003376866.1| adn methyltransferase [Xanthomonas albilineans GPE PC73]
gi|283474373|emb|CBA16874.1| putative adn methyltransferase protein [Xanthomonas albilineans]
Length = 432
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/251 (18%), Positives = 87/251 (34%), Gaps = 38/251 (15%)
Query: 21 DKIIKGNSISV------L-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+++ G++ L ++LP D+ F DPPYN+ + + +
Sbjct: 183 HRLLCGDATKADDYTQLLGDELP----DMAFTDPPYNVNYANAAKDKASNKNRPILND-- 236
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ E + F + K G +++ S + + + + I+W K
Sbjct: 237 --NLGEGFGGFLTEACMNILGCTK--GAVYIAMSSSELDTLQSAFRAAGGHWSTFIIWAK 292
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + Y + W
Sbjct: 293 NTFTMGRA------------DYQRQYEPILYGWREGIDHFWCGARDQGDVWQ-------- 332
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
++ LHPT KP L+ R + +S+K DI+LDPF GSG++ +K R IE+
Sbjct: 333 -IKKPQKNDLHPTMKPVELVERAVRNSSKTKDIVLDPFGGSGSTLIACEKSGRRARVIEL 391
Query: 254 KQDYIDIATKR 264
Y+D+ +R
Sbjct: 392 DPKYVDVIVRR 402
>gi|226313135|ref|YP_002773029.1| hypothetical protein BBR47_35480 [Brevibacillus brevis NBRC 100599]
gi|226096083|dbj|BAH44525.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 432
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 12/250 (4%)
Query: 20 KDKIIKGNSI---SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ ++ G+S V + L L+ DPPYN+ D +
Sbjct: 173 RHLLMCGDSTSRHDV-QVLMDGVKAALVVTDPPYNVAFKSDSSEL---AADGRASIMNDD 228
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
E ++ F ++ ++V T + + VW K+
Sbjct: 229 MPMEQFEEFLGYTFQNYSDLMDDKAAIYVFHPSSYQREFETKMNEAGIVVRTQCVWVKNA 288
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
F +++ HE + +A +A + + + E
Sbjct: 289 ATFGFA--QYKFKHEPVFYAHLKGQAPAWYGDRKQTTVWRSGGLLGEQQEPNSVW--EVS 344
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R + +HPTQKP LL+ + +S++ DI++D F GSG++ +++ R +E+
Sbjct: 345 RGDVSKYVHPTQKPLELLAIPISNSSQKNDIVVDLFGGSGSTLMTCEQMGRICRTMELDP 404
Query: 256 DYIDIATKRI 265
+ D+ +R
Sbjct: 405 KFCDVIKRRF 414
>gi|300916082|ref|ZP_07132854.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
gi|300416575|gb|EFJ99885.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
Length = 282
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 54/274 (19%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-----------------------GQL 57
+ + G+SI +++K+ +S LI +D PY + + G +
Sbjct: 14 NSVTNGDSIELIKKVQTQSAHLILSDIPYGIGADDWDVLHKNSNNAYLGSSPAQKSAGAI 73
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
++ ++ +D+ K Y + W R LKP + + R
Sbjct: 74 FKKRGKPINGWSDADRKI--PLEYQQWCEEWASEWYRTLKPGASAIIFAGRRFSHRCICA 131
Query: 118 LQNLNFWILNDIVWRKSNPMPN--------------------FRGRRFQNAHET---LIW 154
++N F L DI+ P+ + G R N T ++W
Sbjct: 132 MENAGF-NLRDIIAWMRTKAPHRAQRLSCVYERRGDQYNKEKWDGWRVGNLQPTFEPILW 190
Query: 155 ASPSPKAKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
S K G + + A N+D + + RN+ G LHPTQKP +
Sbjct: 191 FSKPYKIGGTIADNVLLHGVGAYNQDAFTARNGKPENVIHAGFERNEGG--LHPTQKPVS 248
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ ++ +T+ G +++DPF GSG++ AK+L
Sbjct: 249 LMKALIELTTQEGQLVIDPFSGSGSTLVAAKELG 282
>gi|281357233|ref|ZP_06243722.1| DNA methylase N-4/N-6 domain protein [Victivallis vadensis ATCC
BAA-548]
gi|281316264|gb|EFB00289.1| DNA methylase N-4/N-6 domain protein [Victivallis vadensis ATCC
BAA-548]
Length = 409
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/272 (18%), Positives = 94/272 (34%), Gaps = 41/272 (15%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ G+S + + + + DL DPPYN+ L G + +T D S
Sbjct: 167 HILLCGDSTVPDDIAKLMGDEQADLYLVDPPYNVALEGS---------NGLTIQNDNMSD 217
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + F VLKP ++ S
Sbjct: 218 SK-FREFLTKAFSCAADVLKPGSAFYIFHSDSESCNFRLA-------------------- 256
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G H+TL W + + ++Y + + + L
Sbjct: 257 ---SGDTDLEVHQTLYWVKNAFVLGRFDYHYQSESCLYGWKPGAAHRWYSDRCQTNILNF 313
Query: 198 KDGE--KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ +HP+ KP +L ++ +S+K G+++LD F GSG++ ++ R IE+ +
Sbjct: 314 DKPKHNDVHPSMKPVDMLVYLIQNSSKRGELVLDNFGGSGSTLIACEQTGRKCRMIELDE 373
Query: 256 DYIDIATKR---IASVQPLGNIELTVLTGKRT 284
Y+D+ KR + LT K+
Sbjct: 374 KYVDVIRKRWAEFTHGEGCDWESLTPAINKKE 405
>gi|42779473|ref|NP_976720.1| DNA methylase, family protein [Bacillus cereus ATCC 10987]
gi|42735389|gb|AAS39328.1| DNA methylase, family protein [Bacillus cereus ATCC 10987]
Length = 413
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 35/256 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + L +L+ DPPYN+ G + + D ++
Sbjct: 167 HRLVCGDSTKKDTFDVLMDGKAANLVVTDPPYNVNYEGTAGKIKN----------DNMAN 216
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
YD F A + + +++V + + F++ +W+K + +
Sbjct: 217 EAFYD-FLLAAFQNTEAAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLV 275
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++Q+ L K Y SD E+ +
Sbjct: 276 LGRSPYQWQHE-PVLFGWKKKGKHLWY-----------------SDRKQTTIWEFEKPKK 317
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP AL++ +++S+ I+LDPF GSG++ ++ R IE+ + Y
Sbjct: 318 ---NGDHPTMKPVALVAYPIMNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKY 374
Query: 258 IDIATKRIASVQPLGN 273
D+ KR +
Sbjct: 375 CDVIVKRYIEQVGNSD 390
>gi|116486911|emb|CAH64697.1| DNA methylase [Wolbachia endosymbiont of Drosophila yakuba]
Length = 404
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 93/265 (35%), Gaps = 36/265 (13%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L D+ DPPYN+ R D +++
Sbjct: 163 HRIYCGDSSLVESYKALLDDKMADITVCDPPYNVDYVSSQEREDKKILNDNQG------- 215
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + + I+W K++
Sbjct: 216 -EKYELFLYDICSNILAYTK--GAIYICTSSSEFSTLQKVFEEAGGRWSTFIIWAKNHFT 272
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 273 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPT------- 313
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ + +V+S++ GDI+LDPF GSG++ ++ R IE+ +
Sbjct: 314 --HNTLHPTMKPVELMGKAIVNSSRSGDIVLDPFSGSGSTLIACERTGRICRTIELDSKF 371
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+D+ KR G + TGK
Sbjct: 372 VDVTIKR--WQVYTGREAILSGTGK 394
>gi|313896438|ref|ZP_07829989.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974862|gb|EFR40326.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
Length = 421
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 52/275 (18%), Positives = 108/275 (39%), Gaps = 33/275 (12%)
Query: 20 KDKIIKGNSI--SVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S E+L ++ V+L+ DPPY +QL + + D +
Sbjct: 169 KHRVICGDSTLPETYERLLGSEKVNLVCTDPPYMIQLESTSGKIKN----------DDLN 218
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+AY F ++ A V+ + +++V + ++ F + +VW+K
Sbjct: 219 DKDAY-EFLKSAFTAFHSVMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 277
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +IW + D +R++
Sbjct: 278 V--LTRTDWKYIHEPIIWGWRKDGRHRW----------------YGDQKQTTVFAFDRIK 319
Query: 197 N-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ K HP+ KP L++ ++ T+ I+LD F GS ++ +L R G+E++
Sbjct: 320 DSKKDGCGHPSSKPVPLIAYLVKQCTQTNGIVLDGFLGSASTLIACDQLGRICYGVELEA 379
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
++D+A +R + ++ + P
Sbjct: 380 KFVDVAVERYIQSKGGNAEDVFLERDGERIPYADV 414
>gi|104779992|ref|YP_606490.1| adenine specific DNA methylase [Pseudomonas entomophila L48]
gi|95108979|emb|CAK13675.1| putative Adenine specific DNA methylase [Pseudomonas entomophila
L48]
Length = 505
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 59/339 (17%), Positives = 101/339 (29%), Gaps = 78/339 (23%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS 63
+ + + + + +I+G+++ L+ L A V +F DPPYN + + Y +
Sbjct: 25 MPNADLSHGEADSPNMLIQGDNLDALKALLPYYAGQVKCVFIDPPYNTKSAFEQYDDNLE 84
Query: 64 LVDAVTDS-----------------WDKFSSFEAYD------------AFTRAWL----- 89
++ W EA+ F + +
Sbjct: 85 HSQWLSMMYPRLELIRELLAPDGSLWVTLDDNEAHYFKVICDEIFGRPNFIASVIWQKIY 144
Query: 90 --LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
R + + + + + + P G
Sbjct: 145 SPKNSARHFSVDHDYIFVYAKNAEKWVPNPMPRTEKQDKAYRNPDNDPRGPWKAGDLSAR 204
Query: 148 AHETLIWASPSPKAKGYT--FNYDALKAANEDVQMRSDWLIPICSGS------------- 192
+ + + +ED + D I G
Sbjct: 205 NYYGAGVYPITTPSGRVISGPPNGMYWRVSEDKLRQLDEDNRIWWGKDGGNVPAIKRFLS 264
Query: 193 ---------------ERLRNKDGEK---------LHPTQKPEALLSRILVSSTKPGDIIL 228
E +D +K T KPEAL+ RIL +T PGD++L
Sbjct: 265 EVKQGRVPQTFWPYEEVGHTQDAKKEVVAIFGDENFATPKPEALMKRILEVATNPGDLVL 324
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
D F GSGT+ AVA K+ R +IGIE+ R+A
Sbjct: 325 DSFLGSGTTIAVAHKMGRQWIGIEVGAHAESHCQPRLAR 363
>gi|110004952|emb|CAK99283.1| hypothetical n-6 adenine-specific dna methyltransferase protein
[Spiroplasma citri]
gi|110005588|emb|CAK99908.1| hypothetical adenine specific dna methyltransferase protein
[Spiroplasma citri]
Length = 266
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 57/255 (22%), Positives = 99/255 (38%), Gaps = 18/255 (7%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+S+ +L+K+P KS+DLI DPPY + +L + + + D S Y
Sbjct: 8 LYLGDSLEILKKIPDKSIDLILTDPPYLYPDIAKKLENKEKHIKYNLKKIQDPNCSNIQY 67
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R + + I + + L+ L D + N
Sbjct: 68 QIRKRELEFLQGEFISSFDIPSYFKEWMRIIKKPNFIIYLSKQQLKDYLIEIENY----- 122
Query: 142 GRRFQNAHETLIWASPSPKAKG---YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
N LI + A Y + + ++ S+ ++ N
Sbjct: 123 -----NLKFELIIYKKTNDAPSNTIYRKDKELCLYIYKNPISYSNVWNQDMQTIYQITNS 177
Query: 199 D----GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ G HPT K L+ + +K GD +LD F GSGT+ ++L R +IGIE+
Sbjct: 178 NNQFIGNIKHPTVKDINLIKLQINKHSKVGDTVLDCFLGSGTTAIACEQLSRRWIGIEIN 237
Query: 255 QDYIDIATKRIASVQ 269
+ Y +A +R+ ++Q
Sbjct: 238 EKYYKLAKQRLNNIQ 252
>gi|208780084|ref|ZP_03247427.1| type III restriction-modification system: methylase [Francisella
novicida FTG]
gi|208744088|gb|EDZ90389.1| type III restriction-modification system: methylase [Francisella
novicida FTG]
Length = 558
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 66/324 (20%), Positives = 117/324 (36%), Gaps = 67/324 (20%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E +I + I+KGN++ L L V LI+ DPPYN + Y + +
Sbjct: 161 EENPTISNKDNLILKGNNLLALHSLKKKYAGKVKLIYIDPPYNTGNDSFKYNDNFNHSTW 220
Query: 68 VTDSW-----------DKFSSFEAYDAFTRAWLLACRRVL-----------------KPN 99
+T D + F + D +A+L + K N
Sbjct: 221 LTFMKNRLEVARELLRDDGAIFISCDDNEQAYLKILMDEIFGRNNFINNIVWHKKRGKDN 280
Query: 100 GTLWVIGSYHNIFRIGTML-------------QNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
+ ++ N+ G + + ++ + + ++
Sbjct: 281 SAKYFSITHENLIVFGKVKEILEILKVDLEESTKKAYKNQDNDPRGNYRILGIWSRQQGG 340
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR-----------------------SD 183
+ +E + + + + N D +K ++D ++
Sbjct: 341 SEYEYITNSGKKYSKRLWLVNKDTMKKLDDDNRLIESDNKLYYKKFLSENTGSIPETIWK 400
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ + ++ G+ + T KPE LL RIL STKP D++LD F GSGT+ AVA K
Sbjct: 401 DTSNNANAKDEIKKLFGDAVFVTPKPEPLLERILEISTKPNDLVLDFFVGSGTTCAVAHK 460
Query: 244 LRRSFIGIEMKQDYIDIATKRIAS 267
+ R +IGIE DI +R+
Sbjct: 461 MGRQYIGIEQMDYIQDITVERMKK 484
>gi|162457644|ref|YP_001620011.1| DNA methyltransferase [Sorangium cellulosum 'So ce 56']
gi|161168226|emb|CAN99531.1| DNA methyltransferase [Sorangium cellulosum 'So ce 56']
Length = 312
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 42/290 (14%)
Query: 21 DKIIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-----DSWDK 74
+ G++ V LPA DL++ DPP+ + D++D
Sbjct: 3 HLLAHGDAADVCAALPADVRFDLVYLDPPFGVGTTMTARAARGQARGRRRPESGPDAYDD 62
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+S +A A L A R + TL++ + + L +
Sbjct: 63 RASADALVAMLAPRLEAIRDRMTEGATLYLHLDHRAVHDAKVACDRLFGRGAFLGEIIWA 122
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAK----------------------GYTFNYDALK 172
R F H+T++ + + + + + D
Sbjct: 123 PGNGGRGARGFSVTHQTILLYARAASERGQVVYNAADPTLREPYAETSLAMHFKHRDEDG 182
Query: 173 AANEDVQMRSDWLIPICSGSERLRN--------------KDGEKLHPTQKPEALLSRILV 218
+ + RL + + +PTQKPE LL RI+
Sbjct: 183 RLYRERILGGKAYRYYADEGRRLGSVWSDIPGMVANTPLRREATGYPTQKPERLLERIVR 242
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+S+ PG + D GSGT+ A +L R F+G + A +R+
Sbjct: 243 ASSAPGATVADLMCGSGTTLVAAARLGRRFVGGDRSPLAFATARERLDRE 292
>gi|85715691|ref|ZP_01046670.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
gi|85697344|gb|EAQ35223.1| prophage LambdaMc01, DNA methyltransferase [Nitrobacter sp.
Nb-311A]
Length = 443
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 13/247 (5%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ + L K DL+ DPPYN+ + G + + + S
Sbjct: 170 HRLICGDAQNEADYVRVLAGKPADLVLTDPPYNVPIKGHVCGLGKIQHAEFAMASGEM-S 228
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F +L + K L+V + ++F + + N + N IVW K N
Sbjct: 229 ESEFKRFLATFLAHAKAHSKAAAILFVFMDWRHLFELTVAGRENNLELKNLIVWAKDNAG 288
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
G +++ HE + TF + + R++ + R
Sbjct: 289 M---GSFYRSKHELCFVFKNGEGSHVNTF------ELGQHGRYRTNVWEYAGVNTFRAGR 339
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+HPT KP A+++ + TK G ++LDPF GSGT+ A+K R+ IE +
Sbjct: 340 SGDLAMHPTVKPTAMIADAIRDVTKRGAVVLDPFAGSGTTLIAAEKTGRAACAIEYDPRF 399
Query: 258 IDIATKR 264
D+ +R
Sbjct: 400 CDVIIRR 406
>gi|121610449|ref|YP_998256.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121555089|gb|ABM59238.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 331
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 54/301 (17%), Positives = 101/301 (33%), Gaps = 67/301 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+S+ +L +LP S++L+ PP+ LQ D Y
Sbjct: 22 YVADSLDMLRQLPDNSINLVMTSPPFALQRQKDYGNKDQ----------------HEYID 65
Query: 84 FTRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ + + L P+G+ + + S +N + + F + + W
Sbjct: 66 WLTEFATLVYQKLTPDGSFVLDLGGAYQKGLPVRSLYNYRVLIRFCDEIGFHLAEEFFWF 125
Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDV 178
+ +P N R R +++ T+ W S + K Y+ L E
Sbjct: 126 NPSKLPSPIEWVNKRKIRAKDSVNTVWWLSKTEWPKADVSKVLAEYSERMKKLIKDPEAY 185
Query: 179 QMRSDWLIPICSGSERLRNKDGE--------------------------KLHPTQKPEAL 212
+ GS ++ G + HP + P L
Sbjct: 186 YSPAKRPSGHDIGSSFGKDNGGSIPSNLLQISNSEANSQYLKLCKEVGIQAHPARFPAKL 245
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ T+P D+++D F GS T+G V + R ++ E Q+Y+ + R QP+
Sbjct: 246 PEFFIRYLTEPNDLVVDIFGGSNTTGHVCESEGRRWLAFEQLQEYLSASVFRFMQDQPIE 305
Query: 273 N 273
+
Sbjct: 306 S 306
>gi|256026845|ref|ZP_05440679.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D11]
gi|289764838|ref|ZP_06524216.1| chromosome partitioning protein parB [Fusobacterium sp. D11]
gi|289716393|gb|EFD80405.1| chromosome partitioning protein parB [Fusobacterium sp. D11]
Length = 438
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 29/277 (10%)
Query: 21 DKIIKGNS--ISVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + ++KL V DL+ DPPYN+ D+ + D +S
Sbjct: 161 HRLMCGDSTKLEDVKKLVNNEVIDLLVTDPPYNV---------DYQAANGQKIKNDNMNS 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN-- 135
Y F A+ V++ ++ + L F I ++W K+
Sbjct: 212 ENFY-RFLLAFYKNAYEVMRAGAGFYIFHADSETKAFRGALIEAGFKISQCLIWVKNQFI 270
Query: 136 ---------PMPNFRGRRFQNAHETLIWASPSPKAKGY-TFNYDALKAANEDVQMRSDWL 185
P G + H + + + Y + K E ++ +
Sbjct: 271 LSRQDYNWKHEPCLYGWKEGVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILEEY 330
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
I ++ L+N +HPT KP L+S+++ +S+K +LD F GSG++ A++L+
Sbjct: 331 TTIIRENKPLKND----IHPTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLK 386
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
R +E + Y D+ KR A + L
Sbjct: 387 RKAFLMEFDEKYADVIVKRYAEMGKKDIKLLRNGKTY 423
>gi|295100461|emb|CBK98006.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
Length = 263
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 58/260 (22%), Positives = 85/260 (32%), Gaps = 39/260 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + I+ L LP SVD++ DPPY N WD
Sbjct: 20 LFLQDGIAGLRSLPRHSVDMLLTDPPYGTTRNF----------------WDVPLPL---- 59
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP--NF 140
A + +KP G + + + + + VW KS N
Sbjct: 60 ---PELWEAVKWAVKPEGAVLFFA---QCPYDKVLGASNLPMLRYEWVWYKSRCTGFLNA 113
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRSDWLIPICSGSERLRNK 198
R + L++ P K N I SGSE
Sbjct: 114 RRAPLKKTENILVFYQKLPLYNPQFEQGKPYKKIAGNRGDSTNYGKFIRSGSGSEDGLRF 173
Query: 199 DGE---------KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G +HPTQKP L + + T+PG+++ D GSGT+ A R FI
Sbjct: 174 PGNVLAFPTVQRTIHPTQKPVELCEYFIKTYTRPGEVVADICAGSGTTAVAALNTGRRFI 233
Query: 250 GIEMKQDYIDIATKRIASVQ 269
E Y A++RI + +
Sbjct: 234 CFETVPAYYAAASERIRAAR 253
>gi|313895572|ref|ZP_07829128.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975698|gb|EFR41157.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
Length = 421
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 50/277 (18%), Positives = 107/277 (38%), Gaps = 37/277 (13%)
Query: 20 KDKIIKGNSISVL-----EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
K ++I G+S L L ++ V+L+ DPPY + L + + D
Sbjct: 169 KHRVICGDS--TLPGTYERLLGSEKVNLVCTDPPYFVALESSSGKIKN----------DD 216
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ +AY F ++ +A + + +++V + ++ F + +VW+K
Sbjct: 217 LNDKDAY-EFLKSAFIAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKD 275
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ ++ HE +IW + D +R
Sbjct: 276 RLV--LTRTDWKYIHEPIIWGWRKDGRHRW----------------YGDQKQTTVFAFDR 317
Query: 195 LRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+++ K HP+ KP L++ ++ T+ I+LD F GS ++ ++L R G+E+
Sbjct: 318 IKDSKKDGCGHPSSKPVPLIAYLVKQCTQTNGIVLDGFLGSASTLIACEQLNRICYGVEL 377
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
+ ++D+A +R + ++ + P
Sbjct: 378 EPKFVDVAVERYIQSKGGNAEDVFLERDGERIPYADV 414
>gi|259505603|ref|ZP_05748505.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166814|gb|EEW51368.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 363
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 55/308 (17%), Positives = 99/308 (32%), Gaps = 68/308 (22%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-------------------------- 58
G+S+ ++++LP SV LI DPPY+ +
Sbjct: 30 HGDSLQLMKRLPDNSVSLILTDPPYHSTKKENILGDTAFGEDDDFIAWMVECAKEWKRVL 89
Query: 59 RPDHSLVDAVTDS--------------------WDKFSSFEAYDAFTRAWLLACRRVLKP 98
RP+ +L + W K + YD + R P
Sbjct: 90 RPNGTLYVFCSSEMSARLEVNLAQFFRPIGHITWSK-PNLPGYDGWKGKMKKEALRSWYP 148
Query: 99 NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM------------PNFRG---- 142
+ ++ + + ++ L D M N G
Sbjct: 149 HSERILVFEHGTYGALEARRRSPMGIYLRDCRLAAGLSMVALTEATGAYGKINRGGAVAN 208
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKD 199
+ + KA T D++ + V+ D ++
Sbjct: 209 WEAGRNIPSREQYAKLRKALLETGRVDSMVEYEDLVRPMFLSGDVEYTDVWDFPSVKQYK 268
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+ HP +KP ALL I+ +S+ PGD++LD F GSG++ A R I +E++ +++
Sbjct: 269 GK--HPAEKPVALLRHIIAASSYPGDVVLDSFAGSGSTAVAAITEGRRAITMELEDKWVE 326
Query: 260 IATKRIAS 267
+
Sbjct: 327 RTIHSVQF 334
>gi|25028049|ref|NP_738103.1| hypothetical protein CE1493 [Corynebacterium efficiens YS-314]
gi|23493333|dbj|BAC18303.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 370
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 55/308 (17%), Positives = 99/308 (32%), Gaps = 68/308 (22%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-------------------------- 58
G+S+ ++++LP SV LI DPPY+ +
Sbjct: 37 HGDSLQLMKRLPDNSVSLILTDPPYHSTKKENILGDTAFGEDDDFIAWMVECAKEWKRVL 96
Query: 59 RPDHSLVDAVTDS--------------------WDKFSSFEAYDAFTRAWLLACRRVLKP 98
RP+ +L + W K + YD + R P
Sbjct: 97 RPNGTLYVFCSSEMSARLEVNLAQFFRPIGHITWSK-PNLPGYDGWKGKMKKEALRSWYP 155
Query: 99 NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM------------PNFRG---- 142
+ ++ + + ++ L D M N G
Sbjct: 156 HSERILVFEHGTYGALEARRRSPMGIYLRDCRLAAGLSMVALTEATGAYGKINRGGAVAN 215
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKD 199
+ + KA T D++ + V+ D ++
Sbjct: 216 WEAGRNIPSREQYAKLRKALLETGRVDSMVEYEDLVRPMFLSGDVEYTDVWDFPSVKQYK 275
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+ HP +KP ALL I+ +S+ PGD++LD F GSG++ A R I +E++ +++
Sbjct: 276 GK--HPAEKPVALLRHIIAASSYPGDVVLDSFAGSGSTAVAAITEGRRAITMELEDKWVE 333
Query: 260 IATKRIAS 267
+
Sbjct: 334 RTIHSVQF 341
>gi|119509284|ref|ZP_01628434.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
gi|119466126|gb|EAW47013.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
Length = 882
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 70/333 (21%), Positives = 113/333 (33%), Gaps = 71/333 (21%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLN----------------------GQLYRPD 61
GNS++++ +LP +SVDLI PP+ L ++ +P
Sbjct: 27 YLGNSLALMAELPNESVDLICTSPPFALVRKKEYGNVDACEYIEWFKKFAIQFYRILKPQ 86
Query: 62 HSLVDAVTDSWDK---------------------------------FSSFEAYDAFTRAW 88
SLV + +W K F A W
Sbjct: 87 GSLVVDIGGTWHKGVPVRSLYHFELVVELCKPKSKGGLGFYLAQELFWYNPAKLPTPAEW 146
Query: 89 LLACRRVLKP--NGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDIVWRKSN 135
+ R +K N W+ H + +L+N L S
Sbjct: 147 VTVRRERVKDAVNTVWWLSKDPHPKANNKRVLRPYSDAMKNLLKNGYEAKLRPSGHDIST 206
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--- 192
N RG S N+ VQ + + +
Sbjct: 207 KFKNDRGGAIPPNIIIDSEFGSSTLIGKPVLGEFNWILENDMVQPVNVISASNTASNDYY 266
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+R ++G K HP + P+AL ++ T+PGD++LDPF GS T+G VA+ L R ++ E
Sbjct: 267 QRRCKEEGVKPHPARFPQALPEFVIGLCTEPGDLVLDPFAGSNTTGRVAETLDRRWLAFE 326
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
+ ++YI + R + PL L +T+
Sbjct: 327 LDENYIQTSQFRFENDAPLVVTPLVDKKALKTK 359
>gi|317132770|ref|YP_004092084.1| ParB domain protein nuclease [Ethanoligenens harbinense YUAN-3]
gi|315470749|gb|ADU27353.1| ParB domain protein nuclease [Ethanoligenens harbinense YUAN-3]
Length = 420
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 31/280 (11%)
Query: 20 KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++ G+S + L K V+L+ D PY + L + + D
Sbjct: 166 KHTVVCGDSTDPETFAKLLGDKKVNLVCTDAPYFVNLENASGKIAN----------DDLK 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+AYD F + + + +++ + ++ F + ++W+K
Sbjct: 216 GTQAYD-FLMKCFSNFKNAMADDASIYEFYATMQARVFYDAFEDAGFKVGAGLIWKKPRA 274
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
P R N + K K Y + V+
Sbjct: 275 -PLMRTDWKFNMEPIIFGWRKDGKHKWYGDQKQKAVFEFDGVKN---------------- 317
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+K+ HP+ KP L++ ++ ST ++LD F GS ++ ++ R G+E++
Sbjct: 318 SKEDGFGHPSSKPVPLIAYLIEQSTATNGLVLDGFLGSASTLIACDQIGRICYGVELEPK 377
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
Y+D+A R + ++ ++ + ++E
Sbjct: 378 YVDVAVVRYLHSHNEDSSDVKLVRDGKEYTYEQALEMMEA 417
>gi|291515624|emb|CBK64834.1| DNA modification methylase [Alistipes shahii WAL 8301]
Length = 408
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 52/319 (16%), Positives = 89/319 (27%), Gaps = 59/319 (18%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
+P KSV LI PPY + S+E+Y C R
Sbjct: 1 MPDKSVHLIITSPPYWQLKDY-----------GSDGQIGFHDSYESYINNLNMVWAECNR 49
Query: 95 VLKPNGTLWVIGSYHN--------------------------IFRIGTMLQNLNFWILND 128
VL L + + +G ++ +
Sbjct: 50 VLHDGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCEALGMDYMGAVIWQKQTTMNTT 109
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
P R + +E ++ KA +D
Sbjct: 110 GGGAVMGSFPYPRNGILKIDYEFILIFKKQGKAPVPAIEQKQCSEMTKDEWNTFFASHWN 169
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
G++ + H PE L R++ + G+ + DPF GSGT+ A+ L+R+
Sbjct: 170 FGGAK-------QDGHIAVFPEELPHRLIKMFSFAGETVFDPFMGSGTTALAARNLQRNS 222
Query: 249 IGIEMKQDYIDI---------ATKRIASVQPLGNIELTVLTGKRTEPRVA-----FNLLV 294
IG E+ DY + + + K+T P + +
Sbjct: 223 IGYEINPDYKKYYEEKVASSFSFGNVEYRYSNDRSVFDMDEKKKTLPYIFSDPHKMESKI 282
Query: 295 ERGLIQPGQILTNAQGNIS 313
E +Q G + +
Sbjct: 283 EIKKLQFGSRI-DKDKKER 300
>gi|113200567|ref|YP_717729.1| putative DNA methyl transferase [Synechococcus phage syn9]
gi|76574466|gb|ABA47031.1| putative DNA methyl transferase [Synechococcus phage syn9]
Length = 281
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 55/296 (18%), Positives = 102/296 (34%), Gaps = 55/296 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + + ++++ A+SVDL PPY + D S WD F+ F+
Sbjct: 5 NTTHLMSCVDGMQQMDAESVDLCITSPPY----DDLRTYNDSSK-------WD-FNVFKD 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWR 132
RVLKP G + + + FR + + + L+D +
Sbjct: 53 -------VAAGLARVLKPGGIIMWNVNDATVKGSETGSSFRQCLHFMDAHGFRLHDTMIY 105
Query: 133 KSNPMPNFRGRRFQNAHETLIWAS---------------PSPKAKGYTFNYDALKAANED 177
+ G + + + K GYT +A+ +
Sbjct: 106 EKTGTAFASGPKSVRYTQIFEYCFILSKGKPKTINLIQDKKNKWAGYTSFGNAVTRKKDG 165
Query: 178 ------VQMRSDWLIPICSGSERLRNKDGEK-------LHPTQKPEALLSRILVSSTKPG 224
+ + + + +++N G HP PE L + + + G
Sbjct: 166 TFNDPGKKSNAIREWGVRTNIWKIKNSGGFGQSSKASYKHPATMPEELARGHIQTWSNKG 225
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
D+I+DPF G+GT+ + + R+FIG E+ Y ++ R P L +
Sbjct: 226 DLIIDPFMGAGTTAQMCIEEGRNFIGFEIDPTYHEMCLDRAKESTPHLLTSLVPVE 281
>gi|21674545|ref|NP_662610.1| DNA methylase, putative [Chlorobium tepidum TLS]
gi|21647740|gb|AAM72952.1| DNA methylase, putative [Chlorobium tepidum TLS]
Length = 1122
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 53/329 (16%), Positives = 105/329 (31%), Gaps = 85/329 (25%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W +++I G+S+ V+ L V +I+ DPPY ++ +
Sbjct: 138 WSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYIDPPYGIKYGSNFQPFVNKRDVKDGKDED 197
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ A D+W+ +Y + R LL R +L +G+++V S N+ + +
Sbjct: 198 LTAEPEQIRAFRDTWELG--IHSYLTYLRDRLLLARELLTESGSIFVQISDENVHHVREL 255
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + V P A + ++ ++K + + N +
Sbjct: 256 MDEVFGARNFQRVITIKKRSPQPDKFLSGVADYLIWFSKDRDRSKYNQLYWLSEGEYNGN 315
Query: 178 VQMRSD-----WLIPICSGSERLRNKDGEKLHPTQKPEALLS-----RILVSSTK----- 222
+ SD E G + T E L + R++VS +
Sbjct: 316 EFVTSDLTSSHEYHRTPFEHEGQVFSPGSRYWSTSI-EGLTNLARSGRLVVSGSTLRYKR 374
Query: 223 -------------PGDIILDPF---------------------------------FGSGT 236
D++ PF GSGT
Sbjct: 375 FNSDWPCQLIGNIWDDVVFAPFLEDKLYAVQTSVKILQRCLLMTTDPGDLVFDPTCGSGT 434
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ VA++ R +I + + + +A +R+
Sbjct: 435 TAYVAEQWGRRWITCDTSRVALTLARQRL 463
>gi|76800785|ref|YP_325793.1| modification methylase [Natronomonas pharaonis DSM 2160]
gi|76556650|emb|CAI48221.1| modification methylase [Natronomonas pharaonis DSM 2160]
Length = 346
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 26/272 (9%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ G++ LE+L +V+L+ PPY + +L L+ V ++ D
Sbjct: 1 MKTTHRIVAGDAR-GLEELDDDAVELVVTSPPYPMVELWDDLFADLDGTVASLLSDGDGD 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLNF 123
++FEA A RVL G V Y N RI ++L F
Sbjct: 60 AAFEAMHEQLDAVWRELSRVLVDGGIACVNVGDATRTLGDGFRVYQNHARIIEAFESLGF 119
Query: 124 WILNDIVWR---KSNPMPNFRGRRFQNAHETLIW--------ASPSPKAKGYTFNYDALK 172
L +++WR S G NA+ TL Y+A
Sbjct: 120 DPLPEVLWRKPANSTAKFMGSGMVPPNAYVTLEHEYILVFRNGGRRAFEPNADRRYEAAY 179
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
E Q SD + ++ L N+D + P + R++ + GD +LDPF+
Sbjct: 180 FWEERNQWFSDVWTDVRGETQTLDNED-LRDRSAAYPFEIPYRLINMYSTYGDTVLDPFW 238
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
G+GT+ A R+ +G E+ ++ R
Sbjct: 239 GTGTTTLAAMVAGRNSVGYELDDGLVEAFDDR 270
>gi|222112382|ref|YP_002554646.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
TPSY]
gi|221731826|gb|ACM34646.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
Length = 471
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/291 (17%), Positives = 88/291 (30%), Gaps = 55/291 (18%)
Query: 21 DKIIKGNS--ISVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V+ L V L F PPY Q +
Sbjct: 177 HRLICGDATDRDVVAALMQGEVSRLCFTSPPYGNQRDYTSG------------------G 218
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIG---TMLQNLNFWILNDI 129
+D R + +G + + I ++ +
Sbjct: 219 ISDWDGLMRGVF--AHLPMAGDGQVLINLGLIHRDNEVIPYWDGWLAWMRQQGWRRFAWY 276
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALK------------- 172
VW + MP R + E + K
Sbjct: 277 VWDQGPGMPGDWQGRLAPSFEFVFHFNRESRKPNKIVLCKHAGQESHLRADGSSTAMRGK 336
Query: 173 ------AANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
++ + + R + K G+ + HP P AL ++ + T GD
Sbjct: 337 DGEVGGWTHKGQPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGD 396
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
I+ DPF GSGT+ A++ R +E+ +Y+D+A KR P + L
Sbjct: 397 IVFDPFGGSGTTMLAAERTGRVCRSVEIASEYVDVAIKRFQQNHPGVPVTL 447
>gi|297380549|gb|ADI35436.1| Modification methylase [Helicobacter pylori v225d]
Length = 287
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/269 (22%), Positives = 100/269 (37%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
+ ++P SVDLI PPY + D + +E Y +
Sbjct: 14 MNEVPDNSVDLIITSPPYFNIKDYTKNGTQDLQHSTQHVEDLGALEKYEDYLLGLLKVWI 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C R LKPNG L + + + H I + ++ IL+D
Sbjct: 74 ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKMF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W+++NP P R QN E + K K T +
Sbjct: 134 LLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H P L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|220918853|ref|YP_002494157.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219956707|gb|ACL67091.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 599
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/385 (17%), Positives = 119/385 (30%), Gaps = 124/385 (32%)
Query: 22 KIIKGNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD--------SW 72
K+ G+++ +L + P + VDL++ DPP+N + + +H L +V W
Sbjct: 5 KLYYGDNLPMLREFVPDECVDLVYLDPPFNSNQDYNVLFKEHDLSSSVAQLRAFEDCWHW 64
Query: 73 DKF------------------------------------SSFEAYDAFTRAWLLACRRVL 96
D+ S AY L+ RRVL
Sbjct: 65 DQQAQETYEELTGPDSVNHGIPPAVSVLIEAFYKALPQRSDMAAYLVMMAPRLIELRRVL 124
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+G++++ + ++ + + K R F +T+++
Sbjct: 125 ARSGSIYLHCDPTASHYLKLLMDAIFGPEQFRNEIIWKRTHSHGDPRRNFGAVTDTILFY 184
Query: 156 SPSPKAKGYTFNYDALKAA---------NEDVQMRSD----------------------- 183
+ SP+ + + + +S
Sbjct: 185 TRSPEYQFHCQYRPFTAEYAAKRFSGKDEDGRVWQSVTLRSPKPRPNLHYAYHASNGVTY 244
Query: 184 --WLIPICSGSERLRNKD--GEKLHPTQ-----------------KPEALLSRI------ 216
ER+R D G PT+ K ++L I
Sbjct: 245 QPHRNGWSCDPERMRQYDTAGRLHFPTKRGGQLRLKMYLDESKGVKVQSLWDDIPPVNSQ 304
Query: 217 -------------------LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +S+ PGD++LDPF G GT+ A++L R +IGI++
Sbjct: 305 AAERLGYPTQKPLALLERIIATSSCPGDVVLDPFCGCGTAVEAAQRLGREWIGIDVTYLA 364
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
I + R+AS P EL
Sbjct: 365 IRVIRDRLASGFPGIQYELAGEPQD 389
>gi|86160046|ref|YP_466831.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776557|gb|ABC83394.1| DNA methylase N-4/N-6 [Anaeromyxobacter dehalogenans 2CP-C]
Length = 599
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/385 (17%), Positives = 119/385 (30%), Gaps = 124/385 (32%)
Query: 22 KIIKGNSISVLEKL-PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD--------SW 72
K+ G+++ +L + P + VDL++ DPP+N + + +H L +V W
Sbjct: 5 KLYYGDNLPMLREFVPDECVDLVYLDPPFNSNQDYNVLFKEHDLSSSVAQLRAFEDCWHW 64
Query: 73 DKF------------------------------------SSFEAYDAFTRAWLLACRRVL 96
D+ S AY L+ RRVL
Sbjct: 65 DQQAQETYEELTGPDSVNHGIPPAVSVLIEAFYKALPQRSDMAAYLVMMAPRLIELRRVL 124
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+G++++ + ++ + + K R F +T+++
Sbjct: 125 ARSGSIYLHCDPTASHYLKLLMDAIFGPEQFRNEIIWKRTHSHGDPRRNFGAVTDTILFY 184
Query: 156 SPSPKAKGYTFNYDALKAA---------NEDVQMRSD----------------------- 183
+ SP+ + + + +S
Sbjct: 185 TRSPEYQFHCQYRPFTAEYAAKRFSGKDEDGRVWQSVTLRSPKPRPNLHYAYHASNGVTY 244
Query: 184 --WLIPICSGSERLRNKD--GEKLHPTQ-----------------KPEALLSRI------ 216
ER+R D G PT+ K ++L I
Sbjct: 245 QPHRNGWSCDPERMRQYDTAGRLHFPTKRGGQLRLKMYLDESKGVKVQSLWDDIPPVNSQ 304
Query: 217 -------------------LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ +S+ PGD++LDPF G GT+ A++L R +IGI++
Sbjct: 305 AAERLGYPTQKPLALLERIIATSSCPGDVVLDPFCGCGTAVEAAQRLGREWIGIDVTYLA 364
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
I + R+AS P EL
Sbjct: 365 IRVIRDRLASGFPGIQYELAGEPQD 389
>gi|71902388|ref|ZP_00684352.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|71727876|gb|EAO30113.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
Length = 200
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/213 (25%), Positives = 82/213 (38%), Gaps = 23/213 (10%)
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
+ Y + + A D F + A++ WL CRRV +P G L V + + +
Sbjct: 9 KRKYINNGTKHVAPDFDCD-FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTL 67
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+Q+ + +VW K+ GR A E ++WAS
Sbjct: 68 TDAVQSAGWVWQGIVVWDKTPACRPQLGRFRSQA-EFIVWASCGL--------------- 111
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
M G EK H KP AL+ ++ P +LDPF GS
Sbjct: 112 -----MNPKAHPVTPVGVFATGTAPREKRHQVGKPLALMEHLVKIV-PPASTVLDPFAGS 165
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+G A + FIG+E+ Y D+ +R+A
Sbjct: 166 GTTGVAALRAGHRFIGMELSPWYCDVTKQRLAD 198
>gi|300114273|ref|YP_003760848.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosococcus
watsonii C-113]
gi|299540210|gb|ADJ28527.1| DNA methylase N-4/N-6 domain protein [Nitrosococcus watsonii C-113]
Length = 1013
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/327 (17%), Positives = 102/327 (31%), Gaps = 83/327 (25%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 134 WSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNVQH 193
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L R +L +G+++V N+ R+ +
Sbjct: 194 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTDSGSIFVQIGDENVHRVRAL 251
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + F +N + + G N + ++W + + + D
Sbjct: 252 MDEV-FGDVNFVSEIVFQKTGSQPGSIIGNISDYILWFAKRKQNAKVRNIFLPKDGGEGD 310
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQK---------PEALLS--RILV-------- 218
G+ HP +K E L RI+
Sbjct: 311 FSPDPLTSDGASEKGTANFYFQGQIFHPGKKAHWKTTLGGMEILARAGRIIKQRKQIRLR 370
Query: 219 -------------SSTKPGD---------------------------IILDPFFGSGTSG 238
T G ++LDP GSGT+
Sbjct: 371 KYWVDNPVKTLTNIWTDSGGASNVIYVVQTNEKIPQRCLLMSTDPGDLVLDPTCGSGTTA 430
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
VA++ R +I I+ + + +A RI
Sbjct: 431 YVAEQWGRRWITIDTSRVALALARSRI 457
>gi|255103003|ref|ZP_05331980.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
difficile QCD-63q42]
gi|255519121|ref|ZP_05386797.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
difficile QCD-97b34]
gi|255652294|ref|ZP_05399196.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
difficile QCD-37x79]
Length = 256
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 37/273 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ GN + +++ + KS+DLI D PY WD F++
Sbjct: 8 KLYNGNCLEIMDLIEDKSIDLILCDLPYGT----------------TNCKWDTIIPFKS- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R++K G + + S N+ + KS +
Sbjct: 51 ------IWNQYNRIIKDGGAIVLF-SAQPFTTSLINSNIKNYKYSWYWIKNKSTGFAFSK 103
Query: 142 GRRFQNAHETLIWASP-------------SPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ + + ++ P + +
Sbjct: 104 YQPLRKVEDINVFYKKAPLYNPQNLEKLDKPITCKKKNKNKDGIYRHHTLSKEYVQEYTN 163
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ NK+ +HPTQKP LL ++ + T +++LD FGSG+ G + R F
Sbjct: 164 YPNNTLYFNKETNCIHPTQKPVDLLEYLIKTYTNENELVLDNCFGSGSVGIACANINRKF 223
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
+GIE+ DY RI I+ ++
Sbjct: 224 VGIELDSDYFLQGKNRIERAYRNNAIDKNIVKS 256
>gi|325996644|gb|ADZ52049.1| type IIS restriction enzyme M2 protein [Helicobacter pylori 2018]
gi|325998233|gb|ADZ50441.1| type IIS restriction enzyme M2 protein [Helicobacter pylori 2017]
Length = 287
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/269 (22%), Positives = 94/269 (34%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLL 90
+ ++P SVDLI PPY + A + +E Y L
Sbjct: 14 MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYLLGLLKVWL 73
Query: 91 ACRRVLKPNGTLWV-------------------IGSYHN------IFRIGTMLQNLNFWI 125
C R LKPNG L + I H + + +L+N
Sbjct: 74 ECYRALKPNGKLCINAPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNILENKPKMF 133
Query: 126 LNDIVWRKSN---------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
L D+ K P R QN E + K K T +
Sbjct: 134 LLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H P L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|261879519|ref|ZP_06005946.1| DNA (cytosine-5-)-methyltransferase [Prevotella bergensis DSM
17361]
gi|270333836|gb|EFA44622.1| DNA (cytosine-5-)-methyltransferase [Prevotella bergensis DSM
17361]
Length = 350
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/255 (20%), Positives = 95/255 (37%), Gaps = 27/255 (10%)
Query: 32 LEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
+ ++ KSVDL+ PPY + + L + + ++++ + + +K FE
Sbjct: 1 MMQIEDKSVDLVVTSPPYPMIEMWDEILGKQNPNILECLENEPEKA--FEMMHQELDKVW 58
Query: 90 LACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
RV+KP G L + Y+N RI + F L +I+WRK
Sbjct: 59 KESFRVIKPGGFLCINIGDATRTINGKFALYNNHSRITKACIDFGFVGLPNIIWRKQTNA 118
Query: 138 PN--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
PN G HE ++ K + N + + +
Sbjct: 119 PNKFMGSGMLPCGAYVTLEHEWILIFRKGDKRIFKSANEKLARMKSSFFWEERNVWFSDV 178
Query: 190 SGSERLRN---KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ + K + P + R++ ++ GD+ILDPF G+GT+ A R
Sbjct: 179 WDIKGTKQNLQKSKTRERSAAFPFEIPYRLINMFSQKGDMILDPFLGTGTTMQAAIVCGR 238
Query: 247 SFIGIEMKQDYIDIA 261
+ G E+ ++ I
Sbjct: 239 NSCGYEIDANFEQII 253
>gi|308062652|gb|ADO04540.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
Cuz20]
Length = 287
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
+ ++P SVDLI PPY + D + +E Y L
Sbjct: 14 MNEVPDNSVDLIITSPPYFNIKDYTKNGTQDLQHSTQHVEDLGALEKYEDYLLGLLKVWL 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C R LKPNG L + + + H I + ++ IL+D
Sbjct: 74 ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKMF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W+++NP P R QN E + K K T +
Sbjct: 134 LLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H P L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|296115409|ref|ZP_06834044.1| putative DNA methylase N-4/N-6 [Gluconacetobacter hansenii ATCC
23769]
gi|295978048|gb|EFG84791.1| putative DNA methylase N-4/N-6 [Gluconacetobacter hansenii ATCC
23769]
Length = 247
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/270 (25%), Positives = 100/270 (37%), Gaps = 46/270 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+S ++ D+I DPPY + A+
Sbjct: 2 TLLTGDSALLMPW--HGPYDMILVDPPY-------------------------GDTSLAW 34
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D W LKP+G+LWV GS + +N + ++VW K N +F
Sbjct: 35 DRRVADWPGKALAALKPSGSLWVFGSLRSFLASNAAFRNAGWKYAQELVWEKQNG-SSFH 93
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNY-----DALKAANEDVQMRSDW------LIPICS 190
RF+ HE ++ +N DA
Sbjct: 94 ADRFRRVHELIVQFYRDDTPWRAVYNVVPTTSDARARTVRRRHRPPHMGRIDAGHYVSED 153
Query: 191 GSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
G RL RN G +HPT+KP ALL ++ +S PG ++ D F GSG +G +
Sbjct: 154 GGPRLMRSVIPVRNAHGRAIHPTEKPVALLEILIRTSCPPGGLVGDWFAGSGAAGVACRL 213
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R ++G E+ A RIASV PLG
Sbjct: 214 AGRRYVGCEIDPVMAQKARDRIASVLPLGE 243
>gi|317014761|gb|ADU82197.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
Gambia94/24]
Length = 287
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 99/269 (36%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLL 90
+ ++P SVDLI PPY + A + +E Y L
Sbjct: 14 MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYLLGLLKVWL 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C R LKPNG L + + + H I + ++ IL+D
Sbjct: 74 ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKMF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W++ NP P R QN E + K K T +
Sbjct: 134 LLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H P L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|116486907|emb|CAH64840.1| DNA methylase [Wolbachia endosymbiont of Drosophila simulans]
Length = 401
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 37/247 (14%)
Query: 21 DKIIKGNS--ISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + L K D+ DPPYN+ + + +
Sbjct: 163 HRIYCGDSSVVESFKAVLGDKMADITICDPPYNVDYSNSQDKKILNDNQG---------- 212
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 213 -EKYELFLYDICTHILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 269
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W +
Sbjct: 270 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPT------- 310
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LHPT KP L+ + +V+S++PGD +LDPF GSG++ ++ R IE+ +
Sbjct: 311 --HNTLHPTMKPVELMEKAIVNSSRPGDTVLDPFSGSGSTLIACERTGRICRTIELDSKF 368
Query: 258 IDIATKR 264
+D+ KR
Sbjct: 369 VDVTIKR 375
>gi|317179829|dbj|BAJ57615.1| Type IIS restriction enzyme M2 protein [Helicobacter pylori F32]
Length = 287
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLL 90
+ ++P SVDLI PPY + A + +E Y L
Sbjct: 14 MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYLLGLLKVWL 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C R LKPNG L + + + H I + ++ IL+D
Sbjct: 74 ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKMF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W+++NP P R QN E + K K T +
Sbjct: 134 LLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H P L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|237744767|ref|ZP_04575248.1| chromosome partitioning protein parB [Fusobacterium sp. 7_1]
gi|229431996|gb|EEO42208.1| chromosome partitioning protein parB [Fusobacterium sp. 7_1]
Length = 438
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 25/275 (9%)
Query: 21 DKIIKGNS--ISVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + ++KL V DL+ DPPYN+ D+ + D +S
Sbjct: 161 HRLMCGDSTKLEDVKKLVNNEVIDLLVTDPPYNV---------DYQAANGQKIKNDNMNS 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
Y +F A+ V++ ++ + L + F I ++W K+ +
Sbjct: 212 ENFY-SFLLAFYKNAYEVMRAGAGFYIFHADSETKAFRGALADAGFKISQCLIWVKNQFI 270
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNY----------DALKAANEDVQMRSDWLIP 187
+ + HE ++ + N+ + +++Q ++
Sbjct: 271 --LSRQDYNWKHEPCLYGWKEGVKHFFIRNFTQDTIQEIYSKTESMSKKELQETLKNILE 328
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ R +HPT KP L+S+++ +S+K +LD F GSG++ A++L+R
Sbjct: 329 EYTTIIRENKPLRNDIHPTMKPIRLISKLIHNSSKENWNVLDLFGGSGSTLIAAEQLKRK 388
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
+E + Y D+ KR A + L
Sbjct: 389 AFLMEFDEKYADVIVKRYAEMGKKDIKLLRNGKTY 423
>gi|53803170|ref|YP_115058.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
capsulatus str. Bath]
gi|53756931|gb|AAU91222.1| prophage LambdaMc01, DNA methyltransferase [Methylococcus
capsulatus str. Bath]
Length = 447
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/291 (17%), Positives = 86/291 (29%), Gaps = 55/291 (18%)
Query: 21 DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V + + L F PPY Q +
Sbjct: 155 HRLICGDATDPAVVAALMRGERAKLCFTSPPYGNQRDYTTG------------------G 196
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILNDI 129
+DA R + +G + V I L + +
Sbjct: 197 IADWDALMRGVFGHL--PMAEDGQVLVNLGLIHRDNEVIPYWDAWLGWMRAQGWRRFAWY 254
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
VW + MP RF + E + K +
Sbjct: 255 VWDQGPGMPGDWAGRFAPSFEFVFHFNRQSRKPNKIVPCKHAGQDSHLRADGSSTAMRNK 314
Query: 186 IPICSG-------------------SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
G R + K G+ + HP P AL ++ + + G
Sbjct: 315 DGEVGGWTHAGLPTQDTRIPDSVIRVMRHKGKIGKGIDHPAVFPVALPQFVMEAYSDEGA 374
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
++ +PF GSGT+ A++ R +E+ +Y+D+A KR P + L
Sbjct: 375 VVFEPFGGSGTTMLAAERTGRVCRSVEIAPEYVDVAIKRFQQNHPDVAVTL 425
>gi|257389071|ref|YP_003178844.1| DNA methylase N-4/N-6 domain protein [Halomicrobium mukohataei DSM
12286]
gi|257171378|gb|ACV49137.1| DNA methylase N-4/N-6 domain protein [Halomicrobium mukohataei DSM
12286]
Length = 352
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 62/260 (23%), Positives = 94/260 (36%), Gaps = 31/260 (11%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDHSLVDAVTDSWDK 74
E +++ G++ + LP SVDL+ PPY + + D ++ DA+ D D
Sbjct: 1 METTHRVVTGDAREL--ALPDDSVDLVVTSPPYPMIEMWDDIFAALDPAVEDALADE-DG 57
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLN 122
+F+ RVL+P G + S+ N I T L +
Sbjct: 58 ERAFQLMHDVLDTVWAEVVRVLRPGGIACINVGDATRSIGDGFRSFSNHAEITTRLTDRG 117
Query: 123 FWILNDIVWRKSNPMPNF---RGRRFQNAHETLIWAS--------PSPKAKGYTFNYDAL 171
L DI+WRK + G NA+ TL G Y++
Sbjct: 118 LRALPDILWRKPSNRATKFMGSGMLPPNAYPTLEHEHVLVFRNGQRRTFPPGDDDRYESA 177
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
E SD ER +DG + P L R++ + GD +LDPF
Sbjct: 178 YFWEERNVWFSDLWELT---GERQAVEDGLRERSGAFPLELPYRLVSMFSTYGDTVLDPF 234
Query: 232 FGSGTSGAVAKKLRRSFIGI 251
G+GT+ A R +G
Sbjct: 235 LGTGTTTMAALVAGRDSVGY 254
>gi|281420151|ref|ZP_06251150.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
gi|281405951|gb|EFB36631.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
Length = 217
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/138 (42%), Positives = 81/138 (58%), Gaps = 6/138 (4%)
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+ NP PN R F + E +IWA PK Y FNYD +K NE+ QM W +
Sbjct: 40 QCHHMGEDNPPPNISCRYFTYSTEFIIWARKCPKKPHY-FNYDLMKLLNENKQMTDVWRL 98
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
P + E+ + K HPTQKP ALL RI+++ST+ G ILDPF GSGT+G A R
Sbjct: 99 PAIARWEKSQGK-----HPTQKPLALLVRIILASTRHGAWILDPFSGSGTTGIAASLTGR 153
Query: 247 SFIGIEMKQDYIDIATKR 264
++GIE +++Y+D++ +R
Sbjct: 154 RYLGIEREKEYLDLSIRR 171
>gi|315654952|ref|ZP_07907857.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
51333]
gi|315490913|gb|EFU80533.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
51333]
Length = 418
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/252 (18%), Positives = 92/252 (36%), Gaps = 36/252 (14%)
Query: 20 KDKIIKGNSI---SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++ ++ V E L +L+ DPPYN+ D + + DK
Sbjct: 166 RHRLMCADATNPGDV-ETLMDGKQANLVVTDPPYNV---------DFKSNSGLKIAGDKQ 215
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + + F A L G+ +V + Q+ F++ +W K +
Sbjct: 216 DT-DTFYQFLLAAFTNMAASLAKGGSAYVFHADTEGLNFRRAFQDAGFYLSGCCIWVKDS 274
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ ++ HE +++ + + + N +
Sbjct: 275 LVLGRSPYQW--QHEPVLYGWKKDGSHAWYADRKQTTVWNFAKPRK-------------- 318
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
HPT KP LL+ + +ST+ I+LD F GSG++ A+ R+ +E+ +
Sbjct: 319 -----NSDHPTSKPLDLLAYPIRNSTQTNAIVLDTFAGSGSTLMAAEATDRTCYCMELDE 373
Query: 256 DYIDIATKRIAS 267
Y + +R A
Sbjct: 374 KYASVIVRRYAE 385
>gi|225018791|ref|ZP_03707983.1| hypothetical protein CLOSTMETH_02741 [Clostridium methylpentosum
DSM 5476]
gi|224948519|gb|EEG29728.1| hypothetical protein CLOSTMETH_02741 [Clostridium methylpentosum
DSM 5476]
Length = 264
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/279 (21%), Positives = 92/279 (32%), Gaps = 39/279 (13%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
+S A+ +N ++ + + I+ L LP SVD++ DPPY N
Sbjct: 2 PDSPALGQNVPNLNPEPSGLYLMDGIAGLRSLPEHSVDMLLTDPPYGTTRNY-------- 53
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
WD A R +KP+G + + +
Sbjct: 54 --------WDVPLPL-------PELWEAVRWAVKPSGAVLFFA---QCPYDKVLGASNLS 95
Query: 124 WILNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
+ + VW KS RR E ++ F + +S
Sbjct: 96 MLRYEWVWYKSRCTGFLNARRAPLKKTENILVFYRRLPLYNPQFEQGKPYKKIASQRDQS 155
Query: 183 DWLIPICS---GSERLRNKDGE---------KLHPTQKPEALLSRILVSSTKPGDIILDP 230
GSE R G +HPTQKP L ++ + T PG+++ D
Sbjct: 156 PNYGKFVRSGSGSEDGRRFPGNLLSFQTVAHTVHPTQKPVELCEYLIKTYTAPGEVVADI 215
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GSGT+ A R FI E + AT+RI +
Sbjct: 216 CAGSGTTAIAALNTGREFICFETAPAFYGPATERITQAR 254
>gi|317010048|gb|ADU80628.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
India7]
Length = 287
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/269 (23%), Positives = 103/269 (38%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
+ ++P SVDLI PPY N++ + D + +E Y L
Sbjct: 14 MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSTQHVEDLGALEKYEDYLLGLLKVWL 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C RVLKPNG L + + + H I + ++ IL+D
Sbjct: 74 ECYRVLKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKMF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W++ NP P R QN E + K K T +
Sbjct: 134 LLDVYIWKRVNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H P L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|313896452|ref|ZP_07830003.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974876|gb|EFR40340.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
Length = 316
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 34/269 (12%)
Query: 20 KDKIIKGNSI--SVLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++I G+S E+L + V+L+ DPPY +QL + + D +
Sbjct: 64 KHRVICGDSTLPETYERLLGEEKVNLVCTDPPYMIQLESTSGKIKN----------DDLN 113
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+AY F ++ A + + +++V + ++ F + +VW+K
Sbjct: 114 DKDAY-EFLKSAFTAFHSAMATDASIYVFYATAKARIFHDAYEDAGFKVGAGLVWKKDRL 172
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +IW + D +R++
Sbjct: 173 V--LTRTDWKYIHEPIIWGWRKDGRHRW----------------YGDQKQTTVFAFDRIK 214
Query: 197 N-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ K HP+ KP L++ ++ T+ I+LD F GS ++ +L R G+E++
Sbjct: 215 DSKKDGCGHPSSKPVPLIAYLIKQCTQTNGIVLDGFLGSASTLIACDQLGRICYGVELEP 274
Query: 256 DYIDIATKR-IASVQPLGNIELTVLTGKR 283
++D+A +R I S GKR
Sbjct: 275 KFVDVAVERYIQSKDGNAEDVFLERDGKR 303
>gi|162145944|ref|YP_001600402.1| DNA methylase N-4/N-6 [Gluconacetobacter diazotrophicus PAl 5]
gi|161784518|emb|CAP54051.1| putative DNA methylase N-4/N-6 [Gluconacetobacter diazotrophicus
PAl 5]
Length = 247
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 69/270 (25%), Positives = 100/270 (37%), Gaps = 46/270 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+S ++ D+I DPPY + A+
Sbjct: 2 TLLTGDSALLMPW--HGPYDMILVDPPY-------------------------GDTSLAW 34
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D W LKP+G+LWV GS + +N + ++VW K N +F
Sbjct: 35 DRCVPDWPGKALAALKPSGSLWVFGSLRSFLASSAAFRNAGWKYAQELVWEKQNG-SSFH 93
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANEDVQMRSDW------LIPICS 190
RF+ HE L+ +N DA
Sbjct: 94 ADRFRRVHELLVQFYRDDTPWRAVYNSVPTTPDARARTVRRKHRPPHMGQIDAGHYVSED 153
Query: 191 GSERL-------RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
G RL RN G +HPT+KP ALL ++ +S PG ++ D F GSG +G +
Sbjct: 154 GGPRLMRSVIPVRNAHGRAIHPTEKPVALLEILIRTSCPPGGLVGDWFAGSGAAGVACRL 213
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R ++G E+ A RIASV PLG
Sbjct: 214 AGRRYVGCEIDPVMAQKARDRIASVLPLGE 243
>gi|309803500|ref|ZP_07697593.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
11V1-d]
gi|308164384|gb|EFO66638.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
11V1-d]
Length = 520
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 71/328 (21%), Positives = 106/328 (32%), Gaps = 77/328 (23%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN------------------- 54
+ + IIKGN++ L L V I+ DPPYN +
Sbjct: 69 KDDDNLIIKGNNLIALVSLLKRYEGKVKCIYIDPPYNTGSDSFNYNDNFNHSTWLTFMKN 128
Query: 55 -----GQLYRPDHSLVDAVTDS-----------------------WDKFSSFEA---YDA 83
+L D S+ + D W K S + Y +
Sbjct: 129 RLEASYRLLSDDGSIWINIDDDEVHYLKVLCDEIFGRDNFVANIIWKKKFSPQNDARYFS 188
Query: 84 FTRAWLLAC---RRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+L + K NG + + Y N+ + + P+
Sbjct: 189 DMHDHILLFAKNKENFKVNGLPRSEEMDSRYQNLDNDPRGPWTSGDFSVRTYNESTDYPI 248
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM---------RSDWLIPI 188
GR AS + N +V +S I
Sbjct: 249 TTPSGRVVNPPTGRCWRASKEKFDEMVDENRIWFGEDGSNVPRVKRFLSEVKQSVTPQTI 308
Query: 189 CSGSERLRNKD---------GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
SE N++ G+K+ T KPE+LL RI+ + DIILD F GSGT+ A
Sbjct: 309 WDYSEVGHNQEAIQNLNKMFGKKIFDTPKPESLLQRIIHIGSNEDDIILDFFTGSGTTAA 368
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
VA K+ R +IG+E DI +R+
Sbjct: 369 VAHKMGRRYIGVEQMDYIQDITVERLKK 396
>gi|308273677|emb|CBX30279.1| Putative type III restriction-modification system HindVIP enzyme
mod [uncultured Desulfobacterium sp.]
Length = 616
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 67/377 (17%), Positives = 123/377 (32%), Gaps = 84/377 (22%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ + + + + ++ IIKGN++ L L V LI+ DPP+N + +
Sbjct: 160 VEGEQKVTEIKRDENGTIRENLIIKGNNLLALHTLKKQFRGKVKLIYIDPPFNTERD--- 216
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ +++ S + F R LLA L +G + V + + +
Sbjct: 217 -----------SFTYNDSFSHSTWLTFMRNRLLAAHEFLTKDGNIIVHIDNNESHYLKIL 265
Query: 118 L------------------------------QNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L ++ N V+ K + +
Sbjct: 266 LDEIFGRTNFVNEIIWHKGREGGSSRSHSASSSMPTEYQNIFVYAKEKSIRYWSLPLGPY 325
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANED-------VQMRSDWLI-------------- 186
T+ K YT + A + SD +
Sbjct: 326 KKSTIGGIDKDEKGWFYTRGRMSRTPAEWELAEKAGLKTYVSDRIDLEKSEVIKLITASD 385
Query: 187 ------PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
G++ ++N + T KPE LL I+ ++T+P DI+LD F GSGT+ AV
Sbjct: 386 AKYVALGDVWGNDFIKNTKEA-DYDTSKPEGLLKIIIEAATQPKDIVLDFFLGSGTTAAV 444
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK---------RTEPRVAFN 291
KL R IGIE ++I R+ V + + + ++
Sbjct: 445 TIKLNRQCIGIEQLSGGMNILLPRLKEVIGKKIKKDGKIFEEIECDQGGISKSVNWQGGG 504
Query: 292 LLVERGLIQPGQILTNA 308
+ L++ + +
Sbjct: 505 DFIYCELMKYNEDFIDK 521
>gi|144898902|emb|CAM75766.1| DNA methylase N-4/N-6:ParB-like nuclease [Magnetospirillum
gryphiswaldense MSR-1]
Length = 410
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 87/248 (35%), Gaps = 34/248 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+++ G S +VL + S DL F DPPYN+ D F
Sbjct: 162 HRLLCG-SATVLADVEKVLGGSLADLCFCDPPYNVDYGAPTKTAKKDRRILNDSLGDGFR 220
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
F + V K G++++ S + + +VW K+
Sbjct: 221 ------QFLYDASVNILTVTK--GSVYMCMSSSELHTLQGAFMEAGGHWSTFVVWAKNTF 272
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ Y + A D W + ++ +
Sbjct: 273 TLGRA------------DYQRQYEPILYGWKEGADHYWCGDRDQGDVWFV-----NKPAK 315
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N LHPT KP L+ R + +S+K DI+LDPF GSGT+ ++ R IE+
Sbjct: 316 ND----LHPTMKPVELVERAIRNSSKSRDIVLDPFGGSGTTLIACERTGRQARLIELAPR 371
Query: 257 YIDIATKR 264
Y+D+ +R
Sbjct: 372 YVDVIVRR 379
>gi|317474980|ref|ZP_07934249.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
gi|316908883|gb|EFV30568.1| DNA methylase [Bacteroides eggerthii 1_2_48FAA]
Length = 255
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 34/259 (13%)
Query: 23 IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ +G+++ VL L + + D++ +DPPY H DAV D +++ +
Sbjct: 16 LYRGDALDVLPLLAEEGITADMVLSDPPYGT---------THCRWDAVIDIPGMWNAVQG 66
Query: 81 YDAFTRAWLLACRRV---------LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
LL C+ L+ WV + G + ++ +
Sbjct: 67 ISRPDTPVLLFCQHPFTSLLGSSNLRRLRYAWV---WEKTQATGFLNAGRMPMKAHEDIL 123
Query: 132 RKSNPMPNF---RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ +P + + + + Y + + + + RS
Sbjct: 124 VFYDRLPKYHPIKTDGHRRKVVMAEHQRKCDAGEIYRKHDNFRDYISTERYPRSVLKFKT 183
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+K LH TQKP ALL ++ + T GDI+LD GSG++ + R F
Sbjct: 184 --------DKQRSCLHATQKPVALLEYLIRTYTDEGDIVLDFAMGSGSTAVACRNTGRRF 235
Query: 249 IGIEMKQDYIDIATKRIAS 267
+G+E+ ++ A RI
Sbjct: 236 VGVEIDREIFQTALNRITH 254
>gi|124002990|ref|ZP_01687841.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
gi|123991640|gb|EAY31048.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
Length = 403
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 93/287 (32%), Gaps = 18/287 (6%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNL--QLNGQL 57
++ + + + K ++I G+S+ E L + ++ DPPYN+ L G L
Sbjct: 112 EEAEVVVQKGDVYELNGKHRLICGDSLLAATFETLMNGTLARVLITDPPYNIPYSLFGGL 171
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ H + + F ++ + + + + + +
Sbjct: 172 GKVQHEDFSMAAGEMGD----QEFVEFLATYMRHAVQHTVDGSIHYNFMDFRHAWHMCEA 227
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ V + + G ++ HE +N
Sbjct: 228 GGKVYGSREPKQVCVWNKSI-QANGSFYRAKHEFCFIFKSGEAKHLSHLELKDRFRSN-- 284
Query: 178 VQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
D+ +E + + HPT KP +++ L+ +T GDI LD F GS
Sbjct: 285 ---VWDYKSANDFSNEERKEFGKLGALENHPTPKPVRMIADALLDTTNEGDIALDCFLGS 341
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
GT+ ++ RR G+E + Y+ R N +
Sbjct: 342 GTTLMATERTRRICYGVEYEPHYMQGILTRFIHHCQSENKPFEITRN 388
>gi|148266400|ref|YP_001233106.1| site-specific DNA-methyltransferase (adenine-specific) [Geobacter
uraniireducens Rf4]
gi|146399900|gb|ABQ28533.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacter
uraniireducens Rf4]
Length = 531
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/405 (17%), Positives = 124/405 (30%), Gaps = 122/405 (30%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD-------AVTD 70
+ +++G+++ L+ L A V I+ DPPYN G +Y + + + AV
Sbjct: 39 NLLVQGDNLLALKALLPYYAGQVKCIYIDPPYNTGNEGWVYNDNVNSPEMREWLGRAVGK 98
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG----------TMLQN 120
+ S + + L R L+ +G +++ + + + L +
Sbjct: 99 EAEDLSRHDKWLCMMYPRLALLREFLRDDGAIFISIDDNEVHFLRMMMDEIFGANNFLCS 158
Query: 121 LNFWILN----------------------------------DIVWRKSNPMPNFRGRRFQ 146
+ D R NP + RG
Sbjct: 159 FAWEKRYSPPPDTKDIGYLHETLLAYRKSSKFQRNLLPLTFDQTGRYKNPDNDPRGPWQS 218
Query: 147 NAHETLIWASPSPKAKGYTFNYDAL----------KAANEDVQMRSDWLIPICSGSE--- 193
+ AS P N + A +++V +++ I G +
Sbjct: 219 MDYSCRYTASERPNLFYPIINRNTEEEIWPKETRVWAMSKEVHEKNEKENRIWWGKDGKS 278
Query: 194 ---RLRN---------------KDGEKLHP----------------TQKPEALLSRILVS 219
RL+N K H T KP L+ ++
Sbjct: 279 STPRLKNFLSEIQQGMIPVSLLKHEVAGHTDEAAKELRALVPEVKFTPKPTRLIRHLMQI 338
Query: 220 STKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYI-DIATKRIASVQPLG 272
S+ +ILD F GSGT+G R FI +EM + I +R++
Sbjct: 339 SSDKDALILDSFAGSGTTGHAVLAQNASDGGNRRFILVEMDEHICRKITAQRLS------ 392
Query: 273 NIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
V G P + + + L + +GNI ++V
Sbjct: 393 ----RVSQGYEKVPALGGGFR----FCELSEPLFDERGNIRSSVR 429
>gi|297587086|ref|ZP_06945731.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna ATCC 53516]
gi|297575067|gb|EFH93786.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna ATCC 53516]
Length = 416
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/269 (18%), Positives = 100/269 (37%), Gaps = 31/269 (11%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ K+I G+S EKL + V+L+ D PY + L + + D +
Sbjct: 168 RHKVICGDSTLWDTFEKLLGETKVNLVCTDAPYFVDLKNKSGTIKN----------DNLN 217
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
EAY F + + + +++ + ++ F + ++W+K
Sbjct: 218 DKEAY-EFLMKVFTNFKDAMAKDASIYEFYATMKARVFYDAFEDAGFKVGAGLIWKKPRA 276
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
P R N + K Y + ++
Sbjct: 277 -PFMRTDWKFNMEPIIFGWRKDGKHNWYGDQKQTAVFEFDGIK----------------D 319
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++ HP+ KP L++ ++ ST+ ++LD F GS ++ ++L R GIE++
Sbjct: 320 SEKEGCGHPSSKPVPLIAYLIKQSTQTNGLVLDGFLGSASTLIACEELNRICYGIEIEPK 379
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTE 285
++D+A KR ++ + GK+ +
Sbjct: 380 FVDVAVKRYLNLVGSDEDISLLRDGKKYK 408
>gi|306819881|ref|ZP_07453535.1| adenine specific DNA methylase Mod [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304552128|gb|EFM40065.1| adenine specific DNA methylase Mod [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 523
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 20/205 (9%)
Query: 11 ENQNSIF--EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
E N I + ++ II G+++ L+ L + V I+ DPPYN +
Sbjct: 28 EKSNCINNPDTENMIIHGDNLLALKSLESKYSGKVKCIYIDPPYNTGSAFE--------- 78
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFW 124
+D + + + L R +L +G++W+ + +
Sbjct: 79 -----HYDDNLEHSTWLSLIKPRLEILRNLLSDDGSIWISIDDDEGHYLKVLCDEIFGRN 133
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ R F + H+ ++ + + ++ + ++ +D
Sbjct: 134 NFVNTCIWHKKHTRANDARWFSDNHDFILVYAKNKESWKPNLLPRSDESRKGYTNPDNDP 193
Query: 185 LIPICSGSERLRNKDGEKLHPTQKP 209
SG + + + ++P P
Sbjct: 194 RGVWASGPCHAKTPNEKDIYPITTP 218
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 1/178 (0%)
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
P G + + + ++ + + A + +
Sbjct: 193 PRGVWASGPCHAKTPNEKDIYPITTPSGRVVMPPAGTSWRFSEKKMSELIADNRIWFGDK 252
Query: 158 SPKAKGYTFN-YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
Y D D + + ++ D + T KPE L+ R+
Sbjct: 253 GSNIPRYKRFLTDVKDGFVPTTLWFRDEVGDNQEAKKEVKQIDSVSVFGTPKPERLIERV 312
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
L ++ GD++LD F GSGT+ AVA K+ R +IGIEM + R+ V +
Sbjct: 313 LTLASDKGDLVLDSFLGSGTTAAVAHKMNRKYIGIEMGEHAYTHCKLRLDKVIDGSDQ 370
>gi|116327802|ref|YP_797522.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116120546|gb|ABJ78589.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
Length = 360
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/328 (19%), Positives = 108/328 (32%), Gaps = 34/328 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + +I +S + L ++SVDL+ PPY + S D
Sbjct: 1 MKQTIHRIQFRDSRKMFP-LKSESVDLVLTSPPYPMIEMWDELFFGFSKEIQENFPTDPN 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNF 123
S+E RVLK G L + Y N RI ++ F
Sbjct: 60 LSYERIHIELDKVWKESFRVLKNGGFLVINIGDATRNTSAGFQIYMNHARILQGCNSIGF 119
Query: 124 WILNDIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
L I+WRK PN G HE ++ S K K T +A +
Sbjct: 120 QSLPGILWRKQTNSPNKFMGSGMLPAGAYVTLEHEHILIFRKSNKRKFVTKAEQFARAQS 179
Query: 176 EDVQMRSDWLIPICSGSERLRNKDG---EKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
+ + + + P L +RI++ + GD++LDPF+
Sbjct: 180 AFFWEERNLWFTDLWDFKGKKQSLNPLTGRDRSAAYPLELANRIILMYSLKGDVVLDPFW 239
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDI----------ATKRIASVQPLGNIELTVLTGK 282
G+GT+ A R+ IG ++ + RI + +
Sbjct: 240 GTGTTTLAAIGNCRNSIGFDLNPGLFQTHFENLSSLGESLNRIVEKRKRDHDLFVQTRQN 299
Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQG 310
+P + FN ++ ++ + N +
Sbjct: 300 EGKPLLHFNQNLQTPVVTKQEKFLNLEK 327
>gi|299067592|emb|CBJ38796.1| putative Site-specific DNA-methyltransferase [Ralstonia
solanacearum CMR15]
Length = 466
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/293 (17%), Positives = 92/293 (31%), Gaps = 55/293 (18%)
Query: 20 KDKIIKGNSIS--VLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I G++ V+ L A DL F PPY Q
Sbjct: 173 EHRLICGDATDAAVIAALMAGQHADLCFTSPPYANQRTYTTG------------------ 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILND 128
+D R + +G + V + + + +
Sbjct: 215 GIADWDVLMRGVFGNL--PMAGDGQVLVNLGLVHRDSEVVPYWDGWIGWMRTQGWRRFGW 272
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------------------- 169
VW + MP R + E + + P+ T
Sbjct: 273 YVWDQGPGMPGDWMGRLAPSFEFVFHFNREPRRPNKTVPCKFAGQDEHLRADGTSTSMRG 332
Query: 170 ----ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPG 224
A+E + + R + K G+ + HP P AL ++ + +
Sbjct: 333 KDGVRGSWAHEGTVTQDTRIPDSVIRVMRHKGKIGKGIDHPAVFPVALPEFVIEAYSDAS 392
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
D++ +PF GSGT+ A++ R +E+ +Y+D+A KR P + L
Sbjct: 393 DVVFEPFGGSGTTMLAAQRTGRLCRSVEVAPEYVDVAIKRFQQNFPEVPVTLQ 445
>gi|116331534|ref|YP_801252.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116125223|gb|ABJ76494.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 360
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/328 (19%), Positives = 107/328 (32%), Gaps = 34/328 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + +I +S L ++SVDL+ PPY + S D
Sbjct: 1 MKQTIHRIQFRDSRKTFP-LKSESVDLVLTSPPYPMIEMWDELFFGFSKEIQENFPTDPN 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNF 123
S+E RVLK G L + Y N RI ++ F
Sbjct: 60 LSYERIHIELDKVWKESFRVLKNGGFLVINIGDATRNTSAGFQIYMNHARILQGCNSIGF 119
Query: 124 WILNDIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
L I+WRK PN G HE ++ S K K T +A +
Sbjct: 120 QSLPGILWRKQTNSPNKFMGSGMLPAGAYVTLEHEHILIFRKSNKRKFVTKAEQFARAQS 179
Query: 176 EDVQMRSDWLIPICSGSERLRNKDG---EKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
+ + + + P L +RI++ + GD++LDPF+
Sbjct: 180 AFFWEERNLWFTDLWDFKGKKQSLNPLTGRDRSAAYPLELANRIILMYSLKGDVVLDPFW 239
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDI----------ATKRIASVQPLGNIELTVLTGK 282
G+GT+ A R+ IG ++ + RI + +
Sbjct: 240 GTGTTTLAAIGNCRNSIGFDLNPGLFQTHFENLSSLGESLNRIVEKRKRDHDLFVQTRQN 299
Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQG 310
+P + FN ++ ++ + N +
Sbjct: 300 EGKPLLHFNQNLQTPVVTKQEKFLNLEK 327
>gi|15645980|ref|NP_208160.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
26695]
gi|2314539|gb|AAD08412.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
26695]
Length = 287
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLL 90
+ ++P SVDLI PPY + A + +E Y L
Sbjct: 14 MNEVPDNSVDLIITSPPYFNIKDYAKNGTQDLQHSAQHVEDLGALEKYEDYLLGLLKVWL 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C R LKPNG L + + + H I + ++ IL+D
Sbjct: 74 ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNMLKNKPKMF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W+++NP P R QN E + K K T +
Sbjct: 134 LLDVYIWKRANPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H P L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|124004362|ref|ZP_01689208.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
gi|123990432|gb|EAY29931.1| prophage LambdaSa04, DNA methylase [Microscilla marina ATCC 23134]
Length = 495
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 91/284 (32%), Gaps = 12/284 (4%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNL--QLNGQL 57
++ + + + K ++I G+S+ E L + ++ DPPYN+ L G L
Sbjct: 204 EEAEVIVQKGDVYELNGKHRLICGDSLLAATFETLMNGTLARVLITDPPYNIPYSLFGGL 263
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ H + + F ++ + + + + + +
Sbjct: 264 GKVQHEDFSMAAGEMGD----QEFVEFLATYMRHAVQHTVDGSIHYNFMDFRHAWHMCEA 319
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ V + + G ++ HE +N
Sbjct: 320 GGKVYGSREPKQVCVWNKSI-QANGSFYRAKHEFCFIFKSGEAKHLSHLELKDRFRSN-- 376
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
V + + HPT KP +++ L+ +T GDI LD F GSGT+
Sbjct: 377 VWEYKSANDFSNEERKEFGRLGALENHPTPKPVRMIADALLDTTNEGDIALDCFLGSGTT 436
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
A++ RR G+E + Y+ R N +
Sbjct: 437 LMAAERTRRICYGVEYEPGYMQGILTRFIHHCQTENKPFEITRN 480
>gi|237738209|ref|ZP_04568690.1| chromosome partitioning protein parB [Fusobacterium mortiferum ATCC
9817]
gi|229420089|gb|EEO35136.1| chromosome partitioning protein parB [Fusobacterium mortiferum ATCC
9817]
Length = 439
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/268 (20%), Positives = 104/268 (38%), Gaps = 29/268 (10%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S +EKL ++DL+ DPPYN+ + + D S
Sbjct: 161 EHRLMCGDSTKKEDVEKLVDGATIDLMITDPPYNVNYESTAGKIKN----------DNMS 210
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S + Y F + + V++ ++ + + + F I ++W K+
Sbjct: 211 SNDFY-EFLKKFYANAFSVMRDGAAFYIFHADSETKAFRGACEEVGFKISQCLIWVKNAF 269
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP--------- 187
N + + HE ++ A + + + ++S
Sbjct: 270 --NLSMQDYHWRHEPCLYGWKLGTAHYFIADRSQDTILEDIESLKSKSKTELLEMYLTLQ 327
Query: 188 ----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
S R +HPT KP LL+R++V+S++ ILD F GSG++ A++
Sbjct: 328 KTLENVSTIIRENKPLKNDVHPTMKPLKLLARLMVNSSQKEWNILDLFGGSGSTMMTAEQ 387
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L R +E + D+ KR ASV
Sbjct: 388 LGRKSYLMEYDPRFADVIVKRFASVNKN 415
>gi|56416259|ref|YP_153334.1| DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197365182|ref|YP_002144819.1| DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|11992068|gb|AAG42425.1|AF306456_2 DNA methyltransferase SptAIM [Salmonella enterica subsp. enterica
serovar Paratyphi A]
gi|22135356|gb|AAM93161.1|AF508974_1 DNA methyltransferase SbaIM [Salmonella enterica]
gi|56130516|gb|AAV80022.1| DNA methyltransferase SptAIM; protects DNA against PvuII
endonuclease [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197096659|emb|CAR62274.1| DNA methyltransferase SptAIM; protects DNA against PvuII
endonuclease [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 331
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/301 (18%), Positives = 103/301 (34%), Gaps = 67/301 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+S+ +LE +P S++L+ PP+ LQ + D E Y
Sbjct: 18 YIADSLEMLESMPDNSLNLVMTSPPFALQRKKEYGNHDQ----------------EQYID 61
Query: 84 FTRAWLLACRRVLKPNGTLWVIG-----------SYHNIFRIGTMLQNLNFWILNDIVWR 132
+ + + LK +G+ V S +N + M+ + F + D W
Sbjct: 62 WFLKFGELVFKKLKDDGSFVVDFGGAYMKGVPVRSVYNFRVLIRMIDEVGFHLAEDFYWF 121
Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPK------------AKGYTFNYDALKAA 174
+ +P N R R +++ T+ W S + + +
Sbjct: 122 NPSKLPSPIEWVNKRKLRVKDSVNTIWWFSKTEWPKSDITKVLVPYSDRMKKLIEDPNKF 181
Query: 175 NEDVQMRSDWLIPICSGSERL----------------------RNKDGEKLHPTQKPEAL 212
S I G + K G K HP + P L
Sbjct: 182 YSPKMRPSGHDISSSFGKDNGGAIPPNLLQIPNSESNGGYLSGCKKIGVKGHPARFPSKL 241
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ T+PGD+++D F GS T+G+ A++L+R ++ E+ +Y+ + R
Sbjct: 242 PEFFINMLTEPGDLVVDIFGGSNTTGSAAEQLKRKWLSFELSPEYVAASVFRFTDKNTSQ 301
Query: 273 N 273
+
Sbjct: 302 D 302
>gi|322378661|ref|ZP_08053095.1| putative type II cytosine specific methyltransferase [Helicobacter
suis HS1]
gi|322380031|ref|ZP_08054295.1| type II cytosine-specific methyltransferase [Helicobacter suis HS5]
gi|321147547|gb|EFX42183.1| type II cytosine-specific methyltransferase [Helicobacter suis HS5]
gi|321148914|gb|EFX43380.1| putative type II cytosine specific methyltransferase [Helicobacter
suis HS1]
Length = 391
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/285 (17%), Positives = 100/285 (35%), Gaps = 57/285 (20%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
++N ++ + I ++ G++ L K+ + L+F PPY Y+
Sbjct: 125 RQNKHSLKKQSPQIKRP--TLLVGDNRLTLNKIRQGQIQLVFTSPPYYNARTYSSYK--- 179
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN---------------GTLWVIGS 107
+++ Y + L R+L+ G +
Sbjct: 180 --------------NYKEYLKQMQESLAQAYRILEEGRFIIINVSPVIVKRAGREFESIR 225
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y F ++L F+ +++I+W K R + + + Y N
Sbjct: 226 YPIHFDFHSILVQSGFYFIDEIIWIKPEVCVPNR----------IAGYLQTKRPLSYKPN 275
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNK-------------DGEKLHPTQKPEALLS 214
+ ++RL+N +K HP PE L++
Sbjct: 276 CITESLLVYRKNTPFLLDRNMKRYNKRLKNDGAVDSTNCWFITPKSDKDHPAVFPEELVA 335
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
R+L + GD++ DPF GSGT VA++++R + E ++++
Sbjct: 336 RVLRYYSFEGDVVCDPFAGSGTLARVAQRMKRIALLCEQNEEFVK 380
>gi|300933375|ref|ZP_07148631.1| ParB family DNA methylase [Corynebacterium resistens DSM 45100]
Length = 416
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 34/251 (13%)
Query: 20 KDKIIKGNSISV--LEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ + L S +L+ DPPYN+ D +T D+
Sbjct: 166 RHRLVCGDATDADDVAMLMDGKSANLVLTDPPYNVAFESS---------DGLTIKNDEMK 216
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A VL G+ +V + + F + +W K +
Sbjct: 217 ADSFY-EFLLAAFTNMAGVLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVKDSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ I + ++ +
Sbjct: 276 VLGRSPYQW--QHEPVLYGWKQGAKH---------------KWFADRKQTTIWNFAKPRK 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N D HPT KP LL+ + +ST+ IILD F GSG++ A++ R +E+
Sbjct: 319 NSD----HPTSKPLDLLAYPIRNSTQANAIILDTFAGSGSTLMAAEQTDRIAYLMELDDK 374
Query: 257 YIDIATKRIAS 267
Y + +R A
Sbjct: 375 YASVILRRYAE 385
>gi|298346373|ref|YP_003719060.1| ParB family DNA methylase [Mobiluncus curtisii ATCC 43063]
gi|298236434|gb|ADI67566.1| ParB family DNA methylase [Mobiluncus curtisii ATCC 43063]
Length = 418
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/252 (18%), Positives = 92/252 (36%), Gaps = 36/252 (14%)
Query: 20 KDKIIKGNSI---SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++ ++ V E L +L+ DPPYN+ D + + DK
Sbjct: 166 RHRLMCADATNPADV-ETLMDGKQANLVVTDPPYNV---------DFKSNSGLKIAGDKQ 215
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + + F A L+ G+ +V + + F++ +W K +
Sbjct: 216 DT-DTFYQFLLAAFTNMADALEKGGSAYVFHADTEGLNFRKAFLDAGFYLSGCCIWVKDS 274
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ ++ HE +++ + + N N +
Sbjct: 275 LVLGRSPYQW--QHEPVLYGWKKDGSHAWYANRKQTTVWNFAKPRK-------------- 318
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
HPT KP LL+ + +ST+ IILD F GSG++ A+ R+ +E+ +
Sbjct: 319 -----NSDHPTSKPLDLLAYPIRNSTQTNAIILDTFAGSGSTLMAAQATDRTCYCMELDE 373
Query: 256 DYIDIATKRIAS 267
Y + +R A
Sbjct: 374 KYASVIVRRYAE 385
>gi|147919509|ref|YP_686751.1| N-4 cytosine-specific methyltransferase [uncultured methanogenic
archaeon RC-I]
gi|110622147|emb|CAJ37425.1| N-4 cytosine-specific methyltransferase [uncultured methanogenic
archaeon RC-I]
Length = 347
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/286 (22%), Positives = 104/286 (36%), Gaps = 27/286 (9%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KI GN+ ++ L A SV+L+ PPY +++ + + V ++ D ++E
Sbjct: 5 HKIYFGNARD-MKDLSAGSVNLVVTSPPYPMIEMWDRQFSASSPGVRKALEAGDGKRAYE 63
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNFWILN 127
RVL P+G + + Y N RI + +L
Sbjct: 64 LMHRALDRVWHETDRVLAPSGIVCINIGDATRKVSDAFRLYPNHVRITDFFVKAGYDVLP 123
Query: 128 DIVWRKSNPMPNF---RGRRFQNA-----HETLIWASPSPKAKGY---TFNYDALKAANE 176
I+WRK++ PN G NA HE ++ + + E
Sbjct: 124 MIIWRKTSNKPNKFMGSGMLPPNAYVTLEHEYILIFRKGGNRQFGEDAKVRRQSAYFREE 183
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
SD + ++L K + P L R++ + GD +LDPF G+GT
Sbjct: 184 RNAWFSDVWSDLKGVPQQLNGKGRNR--SAAYPFELPYRLIQMYSVYGDTVLDPFAGTGT 241
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
+ A R+ G E+ I +R+A V L + K
Sbjct: 242 TMLAAMASARNSAGYEIDGTLEQIIDERVAGVMRLTEAVVAERLEK 287
>gi|225869634|ref|YP_002745581.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
gi|225699038|emb|CAW92152.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
Length = 388
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 93/248 (37%), Gaps = 32/248 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+ V + + + DL+ DPPYN+ G+ DA+T D
Sbjct: 157 RHRLMCGDGTNQSDVKKLMGGELADLLITDPPYNVAYQGKTK-------DALTIQNDNMD 209
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S A+ F A V+KP ++ + + ++ + + ++W K+
Sbjct: 210 SN-AFRQFLGEAFKAADSVIKPGAVFYIWHADSEGYNFRGACLDVGWTVRQCLIWNKNAM 268
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + HE ++ + + + + D R
Sbjct: 269 VLGRQDYHW--KHEPCLYGWKDGASHLWASDRKQTTVIDFDKPQR--------------- 311
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP L + ++TK DI+LD F GSGT+ + R +E
Sbjct: 312 ----NGDHPTMKPVGLFDYQIKNNTKGHDIVLDLFGGSGTTLIACESNGRCARLMECDPK 367
Query: 257 YIDIATKR 264
Y+D+ KR
Sbjct: 368 YVDVIIKR 375
>gi|255994270|ref|ZP_05427405.1| DNA (cytosine-5-)-methyltransferase [Eubacterium saphenum ATCC
49989]
gi|255993938|gb|EEU04027.1| DNA (cytosine-5-)-methyltransferase [Eubacterium saphenum ATCC
49989]
Length = 288
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/261 (19%), Positives = 92/261 (35%), Gaps = 23/261 (8%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFS 76
++ + II+G+++ + K+P+ +VD++ D PY Q P L +
Sbjct: 13 KFLNNIIQGDTLEEMAKIPSGTVDMLLVDLPYGTTQNKWDSLIPLEKLWMEYNRIVKENG 72
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ FT + L +L + + + ++ +
Sbjct: 73 AM----IFTASGLFTASLMLSNSKNYKYKYVWEKSKPTNFLNAKKQPLRKHEDILVFYRR 128
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
P + + + Y L +N + +
Sbjct: 129 QP-YYCPQMTQGEPYTKGVRKNQLTGSYGEFNPTLVESNGERYPVDVLYF-------KTA 180
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ- 255
+G+ HPTQK L ++ + +K GD+ILD G+G+ A R+FIGIE +
Sbjct: 181 ESEGKVFHPTQKSVELARYLIRTFSKTGDVILDNTCGAGSFLVAAILEGRNFIGIEKNED 240
Query: 256 ---------DYIDIATKRIAS 267
DYI+I+ KRI
Sbjct: 241 VALFKNKPVDYIEISKKRIKE 261
>gi|120609261|ref|YP_968939.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
citrulli AAC00-1]
gi|120587725|gb|ABM31165.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
Length = 323
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 66/321 (20%), Positives = 106/321 (33%), Gaps = 80/321 (24%)
Query: 19 WKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
W D G+ +L ++ A V PPY + Y PDH S
Sbjct: 8 WLDTTHAGDCRVLLSRMLADGVQVQTCITSPPYF---GLRCYLPDHHPDKH--REIGCGS 62
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHN------------------------- 110
+ E Y A RR+L +GTLW VIG +
Sbjct: 63 TPEQYVAQLVEVFQIVRRLLADDGTLWIVIGDSYAANGASGLNTGWAERSRRYAGGGRRA 122
Query: 111 -----------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ + L+ +++ +++W K NPMP R
Sbjct: 123 AQARNRTRKSVPAGLKAKDLIGVPWMLAFALRRDGWYLRQEVIWHKPNPMPESVTDRCTR 182
Query: 148 AHETLIWASPSPKAKGYTFN-------------------YDALKAANEDVQMRSDWLIPI 188
AHE++ S + + + + +
Sbjct: 183 AHESVFLLSKRARYYFDVQAIAEPVAPSTVLRLSQPRLAQQSGSTRVQGKTNGNMPTVGC 242
Query: 189 CSGSER-----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
R + + H P AL+ +++ ++ GD++LDPF GSGT+G A +
Sbjct: 243 LDMRRRRSVWTIATRANRGPHNATYPAALIGPCILAGSRAGDVVLDPFMGSGTTGTTALR 302
Query: 244 LRRSFIGIEMKQDYIDIATKR 264
LRR F+G E+ + YID R
Sbjct: 303 LRRHFVGCELVRSYIDPTHLR 323
>gi|152981981|ref|YP_001354390.1| DNA modification methylase [Janthinobacterium sp. Marseille]
gi|151282058|gb|ABR90468.1| DNA modification methylase [Janthinobacterium sp. Marseille]
Length = 473
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/291 (17%), Positives = 85/291 (29%), Gaps = 55/291 (18%)
Query: 21 DKIIKGNSIS--VLEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V+ L + L F PPY Q +
Sbjct: 177 HRLICGDAADPSVIASLMRGEQAKLCFTSPPYGNQRDYASG------------------G 218
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILNDI 129
+D R + + + V I L + +
Sbjct: 219 ITDWDGLMRGVFGNV--PMAEDAQVLVNLGLIHRDNEVIPYWDGWLGWMRTQGWRRFAWY 276
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
VW + MP R + E + K +
Sbjct: 277 VWDQGPGMPGDWQGRLAPSFEFVFHFNRQNRKPNKIVPCKHAGQDSHLRADGSSTAMRGK 336
Query: 186 IPICSG-------------------SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
G R + K G+ + HP P AL IL + + GD
Sbjct: 337 DGEVGGWTHAGQPTQDKRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFILDAYSDSGD 396
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
I+ +PF GSGT+ A++ R +E+ +Y+D+A KR P + L
Sbjct: 397 IVFEPFGGSGTTMLAAERTGRRCRAVEIAPEYVDVAVKRFQQNFPDVPVTL 447
>gi|308189375|ref|YP_003933505.1| DNA methylase [Pantoea vagans C9-1]
gi|308055990|gb|ADO08159.1| putative DNA methylase [Pantoea vagans C9-1]
Length = 909
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 41/220 (18%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ ++GNS+ ++ P S+D I DPPY L G R S+ V+D W +S
Sbjct: 3 RFMRGNSVEIMANFPDNSIDFILTDPPY---LVGFKDRSGRSIAGDVSDEWVLPAS---- 55
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK N ++ + + F ++ +V+ K+ +
Sbjct: 56 --------REMFRVLKNNSLAVSFYGWNRVDIFMQAWKAAGFRVVGHLVFTKTYAS---K 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE+ + D + G
Sbjct: 105 SAFVGYQHESAYLLAKGHPPLPAKPLPDVMPWQ-----------------------YTGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ HPT+KP ++L ++ + TKPG ++LDPF GSG++ A
Sbjct: 142 RHHPTEKPVSVLQPLIETFTKPGGLVLDPFAGSGSTCVAA 181
>gi|291296948|ref|YP_003508346.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus ruber
DSM 1279]
gi|290471907|gb|ADD29326.1| DNA methylase N-4/N-6 domain protein [Meiothermus ruber DSM 1279]
Length = 313
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/293 (19%), Positives = 101/293 (34%), Gaps = 67/293 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+++ +L +L +SV L+ PP+ LQ + V Y
Sbjct: 2 YCGDALELLPQLEDQSVHLLLTSPPFALQRP--KVYGNKPQV--------------EYVD 45
Query: 84 FTRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ ++ L P+G+L + + S +N + + ++ +++ D W
Sbjct: 46 WLLEFMRIAYDKLHPSGSLVLDLGGAYEQGVPVRSLYNFRLLVRLCDDIGYFLAQDFYWH 105
Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDV 178
+ +P N R R ++A T+ W S +P + Y+ L E
Sbjct: 106 NPSKLPSPIEWVNKRKIRAKDAVNTVWWLSKNPWPQADLSQVLTPYSERMKKLLRNPEKY 165
Query: 179 QMR--------------------------SDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
S +R G K HP + P L
Sbjct: 166 YQPKERPSGHQISRAFAKDNGGALPSNLLSIPNSGSNDPYQRRCKALGLKPHPARFPAQL 225
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ TKP D++LD F GS T+G VA+ L R +I E+ + + R
Sbjct: 226 PEFFIRLLTKPNDLVLDIFAGSNTTGFVAEGLGRRWIAFELDAHFTATSALRF 278
>gi|300689932|ref|YP_003750927.1| site-specific DNA-methyltransferase [Ralstonia solanacearum PSI07]
gi|299076992|emb|CBJ49605.1| putative Site-specific DNA-methyltransferase [Ralstonia
solanacearum PSI07]
Length = 467
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/293 (17%), Positives = 89/293 (30%), Gaps = 55/293 (18%)
Query: 20 KDKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I G++ V+ L A L F PPY Q N
Sbjct: 174 EHRLICGDAADSDVIATLMAGQQAALCFTSPPYANQRNYTTG------------------ 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILND 128
+D R + G + V + + + +
Sbjct: 216 GIADWDVLMRGVFDNV--PMAGGGQVLVNLGLVHRDSEVVPYWDAWIAWMRTQGWRRFGW 273
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------------------- 169
VW + MP R + E + + + T
Sbjct: 274 YVWDQGPGMPGDWMGRLAPSFEFVFHFNREARRPNKTVPCKFAGRDEHLRPDGTSTSMRG 333
Query: 170 ----ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPG 224
++ + + R + K G + HP P AL ++ + + G
Sbjct: 334 RDGVRGSWTHKGKLTQDTRIPDSVIRVMRHKGKIGRDIDHPAVFPVALPKFVIEAYSDAG 393
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
DI+ +PF GSGT+ A++ R +E+ +Y+D+A KR P + L
Sbjct: 394 DIVFEPFGGSGTTMLAAQRTGRQCRSVEIAPEYVDVAIKRFQQSYPEAPVTLQ 446
>gi|257088347|ref|ZP_05582708.1| DNA methylase [Enterococcus faecalis D6]
gi|256996377|gb|EEU83679.1| DNA methylase [Enterococcus faecalis D6]
Length = 416
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 35/263 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + L +L DPPYN+ G + + +
Sbjct: 169 HRLVCGDSTKQETYDVLMDGKLANLTVTDPPYNVNYEGSAGKIKNDN-----------MA 217
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
EA+ F + + + +++V + + F++ +W+K + +
Sbjct: 218 NEAFYTFLYDAFSCMEKSMADDASIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQSLV 277
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++Q+ L K + YT ++ + + D
Sbjct: 278 LGRSPYQWQHE-PVLYGWKKKGKHQWYTGRKESTIWEFDKPKKNGD-------------- 322
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP LL+ + +S+ I+LDPF GSG++ ++ R IE+ + +
Sbjct: 323 ------HPTMKPIPLLAYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDEKF 376
Query: 258 IDIATKRIASVQPLGNIELTVLT 280
+D+ R +
Sbjct: 377 VDVIVNRYIEQVGSAESVRVIRD 399
>gi|330007888|ref|ZP_08306110.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
gi|328535300|gb|EGF61788.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
Length = 242
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 40/258 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + V ++ + +VDL+ AD PY WD
Sbjct: 3 RLHNADCFDVFPQIASGTVDLVCADIPYGT----------------TQCRWDSVLDLALM 46
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R++KP+ + + + ++ + ++ +W K N
Sbjct: 47 WE-------QLYRIVKPSAAIVLFSAQ---PFTSVLINSNLRDWRSEWIWEKGNATGFLN 96
Query: 142 GRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------ 194
++ AHE + F + + ++ + S+ + ++
Sbjct: 97 AKKQPLRAHENIEVFYRRQPTYNPQFTHGHERRTSKRKTVNSECYGKALTLTKYDSTSRY 156
Query: 195 -------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+K HPTQKP AL+ ++ + + PGD +LD GSGT+G ++ RS
Sbjct: 157 PRDVQFFSSDKQTGNYHPTQKPLALVQYLIETYSNPGDTVLDFTMGSGTAGVACQQTERS 216
Query: 248 FIGIEMKQDYIDIATKRI 265
FIGIE A +R+
Sbjct: 217 FIGIEKDAAIYRTACERM 234
>gi|304389868|ref|ZP_07371827.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315656924|ref|ZP_07909811.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|304327044|gb|EFL94283.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315492879|gb|EFU82483.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 411
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/281 (18%), Positives = 101/281 (35%), Gaps = 35/281 (12%)
Query: 20 KDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ S + L +L+ DPPYN+ ++ DK
Sbjct: 161 RHRLVCGDATSADDIATLMDGKRANLVLTDPPYNVAFESG---------SGLSIKNDKMD 211
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ YD F + V + + +V + F++ +W K +
Sbjct: 212 GEKFYD-FLLSAFTNMAGVCEKGASAYVFHADTEGLNFRRAFAEAGFYLSGCCIWVKDSL 270
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L + K + Y I + ++ R
Sbjct: 271 VLGRSPYQWQHE-PVLYGWVKTGKHRWYADRKQT----------------TIWNFAKPRR 313
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N D HPT KP LL+ + +ST+ I+LD F GSG++ + R +E+ +
Sbjct: 314 NAD----HPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATDRICYCMELDEK 369
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
Y + +R A +T L + + V+RG
Sbjct: 370 YASVILRRYAEHTG-DAAGITCLREGKEYAYLDLVRDVDRG 409
>gi|302873930|ref|YP_003842563.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
cellulovorans 743B]
gi|307689819|ref|ZP_07632265.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
cellulovorans 743B]
gi|302576787|gb|ADL50799.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
743B]
Length = 247
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 27/245 (11%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
L + S+DL+ PPYN+ + D SL Y+ F +
Sbjct: 20 ENLNFILNNSLDLVITSPPYNIGTDYTGSSDDKSLYG--------------YETFIKNVF 65
Query: 90 LACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
C LK + V I + + ++ + ++ I ++ + G
Sbjct: 66 KECYEKLKMDAYCIVNIPENIKTKNEVWYYPKIYSSILKNIGFSLISVHPWFKLSLDGEL 125
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
F + T + K +N+ + + L H
Sbjct: 126 FTSKKWEEGKVCKDSHVHSVTEWFMIFKKSNQKEEFKIGEGFTFTPYKTPL--------H 177
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
P P AL+ ++ + + +LDPF G T+G + R FIG+++ +DYI I +K
Sbjct: 178 PAAWPVALIEELIKNYCQVEGKVLDPFAGICTTGLACVRNNRCFIGVDISKDYISIGSKL 237
Query: 265 IASVQ 269
+
Sbjct: 238 LNEEM 242
>gi|256617090|ref|ZP_05473936.1| DNA methylase [Enterococcus faecalis ATCC 4200]
gi|256596617|gb|EEU15793.1| DNA methylase [Enterococcus faecalis ATCC 4200]
Length = 416
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 35/263 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + L +L DPPYN+ G + + +
Sbjct: 169 HRLVCGDSTKQETYDVLMDGKLANLTVTDPPYNVNYEGSAGKIKNDN-----------MA 217
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
EA+ F + + + +++V + + F++ +W+K + +
Sbjct: 218 NEAFYTFLYDAFSCMEKSMADDASIYVFHADTEGLNFRKAFVDAGFYLSGTCIWKKQSLV 277
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++Q+ L K + YT ++ + + D
Sbjct: 278 LGRSPYQWQHE-PVLYGWKKKGKHQWYTGRKESTIWEFDKPKKNGD-------------- 322
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP LL+ + +S+ I+LDPF GSG++ ++ R IE+ + +
Sbjct: 323 ------HPTMKPIPLLAYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDEKF 376
Query: 258 IDIATKRIASVQPLGNIELTVLT 280
+D+ R +
Sbjct: 377 VDVIVNRYIEQVGSAESVRVIRD 399
>gi|153824598|ref|ZP_01977265.1| DNA methylase [Vibrio cholerae MZO-2]
gi|149741816|gb|EDM55845.1| DNA methylase [Vibrio cholerae MZO-2]
Length = 218
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 29/242 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++++ L L A SVDL+ DPPY L + + S +++ D
Sbjct: 3 LFQDDAVTWLSTLDAASVDLLITDPPYE-SLEKHRKIGTTTRLKVSKASSNQWFDIFPND 61
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F L RVLK + ++ +F I + + + F IVW K + +
Sbjct: 62 RFEAL-LCEVYRVLKNHSHFYLFCDQETMFVIKPIAEKIGFKFWKPIVWDKVSIGMGY-- 118
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
Y Y+ + + + +D IP +R+ +
Sbjct: 119 --------------------HYRARYEYILFFEKGKRKLNDLSIPDILTHKRV-----YR 153
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+PT+KP +LL ++ S++ G++++DPFFGSG++ A L+R F G ++ +
Sbjct: 154 GYPTEKPVSLLEVLVAQSSREGELVVDPFFGSGSTLVAANNLKRQFKGNDISSSAHEHIR 213
Query: 263 KR 264
+R
Sbjct: 214 QR 215
>gi|300775660|ref|ZP_07085521.1| DNA (cytosine-5-)-methyltransferase [Chryseobacterium gleum ATCC
35910]
gi|300505687|gb|EFK36824.1| DNA (cytosine-5-)-methyltransferase [Chryseobacterium gleum ATCC
35910]
Length = 297
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 65/317 (20%), Positives = 106/317 (33%), Gaps = 85/317 (26%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ +++ ++++LP +S+D+I DPPY N +L RP F+ +
Sbjct: 5 KLFNEDNLELMKRLPDESIDVICIDPPYLYLKNQKLERP-----------------FDEH 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F CRR+L NG + + G + +R T+L L F +I+W KS +
Sbjct: 48 KFF-----SECRRLLTKNGFIVMFGRGESFYRWNTILSELKFSFKEEIIWNKSYTTSSM- 101
Query: 142 GRRFQNAHETLIWASPSPKAKGYT------------------------------------ 165
HET++
Sbjct: 102 -HAISRCHETVVIFGKDAGINNVRVPYLEVKQENISSIIQDIKRIKSALNNTKELEALEL 160
Query: 166 FNYDALKAANEDV--------------QMRSDWLIPICSGSERLRNKDGEK------LHP 205
F + ED Q RS + + ++ K +HP
Sbjct: 161 FMTKRMIEFGEDKKRGFNTTIQGVSKEQCRSVKTMQSVVYGMKEKSIINVKRNHYGTIHP 220
Query: 206 TQKPEALLSRILVSSTKPGD-----IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
T+KP LL R+L I+ D F GS + + I E+ Q+Y +
Sbjct: 221 TEKPVRLLERLLALVIPESKPREEIIVADFFGGSMSCMEAVHNMGMKGIACEIDQEYFEK 280
Query: 261 ATKRIASVQPLGNIELT 277
+RI +QPL
Sbjct: 281 GKERIEKLQPLQPELFR 297
>gi|300764707|ref|ZP_07074698.1| hypothetical protein LMHG_11065 [Listeria monocytogenes FSL N1-017]
gi|300514593|gb|EFK41649.1| hypothetical protein LMHG_11065 [Listeria monocytogenes FSL N1-017]
Length = 416
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 35/263 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + L +L DPPYN+ G + + D ++
Sbjct: 169 HRLVCGDSTKQETYDVLMDGKLANLTVTDPPYNVNYEGSAGKIKN----------DNMAN 218
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
Y F + + + +++V + F++ +W+K + +
Sbjct: 219 EAFYI-FLYDAFSCMEKAMADDASIYVFHADTEGLNFRRAFVEAGFYLSGTCIWKKQSLV 277
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++Q+ L K + YT ++ + + D
Sbjct: 278 LGRSPYQWQHE-PVLYGWKKKGKHQWYTGRKESTIWEFDKPKKNGD-------------- 322
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP LL+ + +S+ I+LDPF GSG++ ++ R IE+ + +
Sbjct: 323 ------HPTMKPILLLAYPITNSSMSNCIVLDPFGGSGSTLIACEQTNRICHTIELDEKF 376
Query: 258 IDIATKRIASVQPLGNIELTVLT 280
+D+ R + +
Sbjct: 377 VDVIVNRYIEQVGSADSVRVIRD 399
>gi|315586028|gb|ADU40409.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Helicobacter pylori 35A]
Length = 287
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/269 (22%), Positives = 98/269 (36%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLL 90
+ ++ SVDLI PPY + A + +E Y L
Sbjct: 14 MNEVLDNSVDLIITSPPYFNIKDYTKNGTQDLQHSAQHVEDLGALEKYEDYLLGLLKVWL 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C R LKPNG L + + + H I + ++ IL D
Sbjct: 74 ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILYDLNNTLENKPKMF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W+++NP P R QN E + K K T +
Sbjct: 134 LLDVYIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTKEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H P L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|330996254|ref|ZP_08320144.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
11841]
gi|329573758|gb|EGG55349.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
11841]
Length = 233
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 31/243 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + ++ +P K +L DPPY N Y + K
Sbjct: 2 DCMEYMKSVPDKFFELAVVDPPYFDGPNKLGYYGKEISSFGIKRPAYKVK---------- 51
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
W + +R + +FR+ ++ + N +
Sbjct: 52 HWGIPLKRF------------FEELFRVSKEQIVWGVNYYPYGIFSSGRIVWNKVNGKSS 99
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
+ + + S + +T+ + N Q +S + G +R K+ +++HPT
Sbjct: 100 FSDCEIAFCSMIDTVRMFTYMW------NGMCQGKSLKEGHLQQGDKR---KNEKRIHPT 150
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
QKP AL + +L + PGD ILD GSG+S A K+ F G E+ ++Y D KR
Sbjct: 151 QKPVALYAWLLQNYANPGDKILDTHLGSGSSRIAAYKMGFDFYGTEIDKEYFDAQEKRFR 210
Query: 267 SVQ 269
Sbjct: 211 EEC 213
>gi|260588436|ref|ZP_05854349.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
gi|260541310|gb|EEX21879.1| DNA (cytosine-5-)-methyltransferase [Blautia hansenii DSM 20583]
Length = 230
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 95/255 (37%), Gaps = 45/255 (17%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ + +S+D+I D PY WD S E
Sbjct: 1 MNNISDESIDMILCDLPYGT----------------TKCKWDSIISLEE-------LWKQ 37
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-NAHE 150
R++K NG + + +G + + + +W K+ + ++ AHE
Sbjct: 38 YCRIIKENGAIVLFAQTPFDKVLGA---SNLKMLRYEWIWEKTQATGHLNAKKMPMKAHE 94
Query: 151 TLIWASP--------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR------ 196
L+ + +Y + ++ I G E +R
Sbjct: 95 NLLVFYKKLPTYNPQMTEGHEPIHSYTKYITTQNNTEIYGKMNKEISGGGETIRYPRSVL 154
Query: 197 ----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+K LHPTQKP AL ++ + T GD++LD GSGT+G K L R FIGIE
Sbjct: 155 TFPSDKQTCYLHPTQKPLALCEYMVKTYTNEGDLVLDNCMGSGTTGLSCKNLNRRFIGIE 214
Query: 253 MKQDYIDIATKRIAS 267
++ Y +IA RI +
Sbjct: 215 KEEKYFEIAKDRINN 229
>gi|331007695|ref|ZP_08330828.1| Type III restriction-modification system methylation subunit [gamma
proteobacterium IMCC1989]
gi|330418497|gb|EGG93030.1| Type III restriction-modification system methylation subunit [gamma
proteobacterium IMCC1989]
Length = 626
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 24/194 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD---------A 67
K+ I+G+++ VL+ L V +I+ DPPYN + PD +
Sbjct: 97 KNLFIEGDNLEVLKLLQKSYANKVKMIYIDPPYNTG--KEFIYPDCFQENLDTYLKYTGQ 154
Query: 68 VTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
V + KFSS + + + L R +LK +G L+V + I + ++
Sbjct: 155 VDEEGMKFSSNTESTGRMHSNWLSMMYSRLKIARGLLKNDGILFVSIDDNEIANLTSICH 214
Query: 120 NLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
++ L VW++ + HE ++ + + A+ + D K N D
Sbjct: 215 DIFGEDHFLGCFVWKRRQNADSRNYSNVSPDHEYILAYAKTLDAQLKGKSIDTSKYKNPD 274
Query: 178 VQMRSDWLIPICSG 191
R DW SG
Sbjct: 275 NDPRGDWASIDLSG 288
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ SD +G+ + + G K+ KP L+ + T DI++D F GS T+
Sbjct: 363 TWLSSDISGFTTNGTREVSSLFGAKVFDFPKPVQLIKFFVDQLTSKDDIVMDFFAGSATT 422
Query: 238 GAVAKK------LRRSFIGIEM 253
+ R F+ I++
Sbjct: 423 AQAVMEASAEDSNNRRFLCIQL 444
>gi|167746051|ref|ZP_02418178.1| hypothetical protein ANACAC_00746 [Anaerostipes caccae DSM 14662]
gi|167654566|gb|EDR98695.1| hypothetical protein ANACAC_00746 [Anaerostipes caccae DSM 14662]
Length = 422
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/268 (18%), Positives = 97/268 (36%), Gaps = 35/268 (13%)
Query: 20 KDKIIKGN--SISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+ SI ++ L +L+ DPPYN+ D ++ DK +
Sbjct: 170 RHRLMCGDATSIEDVDALMDGKKANLVITDPPYNVAFESS---------DGLSIKNDKMA 220
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + Y F + L+ G+ +V + + F + +W K++
Sbjct: 221 NDKFY-EFLLSAFKNMANHLESGGSAYVFHADTEGLNFRRAFIDAGFHLSGCCIWVKNSL 279
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA-ANEDVQMRSDWLIPICSGSERL 195
+ +Q HE +++ K + N D
Sbjct: 280 VLG--RSDYQWQHEPVLYGFLPGKHYWSKAAGRSQTTIWNFDKP---------------- 321
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
K HPT KP LL+ + +S++ II+D F GSG++ +K R +E+ +
Sbjct: 322 ---KKNKNHPTSKPLDLLAYPVGNSSRENAIIIDTFGGSGSTLMTCEKTNRICYTMELDE 378
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKR 283
Y + +R + G++
Sbjct: 379 KYASVILRRYVEDTGDAENVFVIRNGEK 406
>gi|320159453|ref|YP_004172677.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
thermophila UNI-1]
gi|319993306|dbj|BAJ62077.1| putative N-4 cytosine-specific methyltransferase [Anaerolinea
thermophila UNI-1]
Length = 278
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/263 (20%), Positives = 89/263 (33%), Gaps = 39/263 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
K+I G+S++ + ++P +SV L+ PPY +A D +SS++
Sbjct: 5 HKLIIGSSVN-MPEIPDESVHLVVTSPPY---------------FNAPFDYKGLYSSYQN 48
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNFWILNDIVWR 132
Y + RVL + + + + F + I+W+
Sbjct: 49 YLEMLKQVAREAYRVLANGRIFVLNIDDMLVDGEKFPIVADATRIFLDAGFRYRDRIIWK 108
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA--------------ANEDV 178
K R + + N
Sbjct: 109 KPEGYLRISRRSGVLLQNPYPMYFYPDNLLESIIIFQKGRFDYKSVPQDVREASKINIKE 168
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ W + + L N EK PE L R + + G+ +LDPF GSGT+
Sbjct: 169 FQENKWYMTLWEMVNVLPNSPLEKD-IAAFPEELPYRCIQLFSYVGETVLDPFCGSGTTM 227
Query: 239 AVAKKLRRSFIGIEMKQDYIDIA 261
VA++L R+ IGIE+ + I I
Sbjct: 228 KVARQLGRNSIGIEINEALIPII 250
>gi|238750970|ref|ZP_04612467.1| Site-specific DNA-methyltransferase (Adenine-specific) [Yersinia
rohdei ATCC 43380]
gi|238710884|gb|EEQ03105.1| Site-specific DNA-methyltransferase (Adenine-specific) [Yersinia
rohdei ATCC 43380]
Length = 625
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV-------- 68
K+ I+G+++ L+ L V +I+ DPPYN + + V+
Sbjct: 98 KNLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGRDFIYDDDYSADVEGYQLASGQVN 157
Query: 69 -------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT-MLQN 120
++ + + A L R +LK +G +++ + + + +
Sbjct: 158 QTGGKLVANTEANGRYHSDWLSMIYARLRLARNLLKDDGVIFMSIDDNEVDNLRKVASEV 217
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
V + P R F H+ ++ + + +
Sbjct: 218 FGDENFVAQVIWQKVFSPKNSARWFSEDHDYVLVYAKNGDSWSPNLLPQTDDMIARYKNP 277
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D S + RN+ L+ + P
Sbjct: 278 DNDPRGVWQSDNLTARNRYDAGLYSVKCP 306
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 208 KPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
KP LL RIL +T P DI+LD F GS T+ K R FI +++
Sbjct: 397 KPVELLQRILQLATSPSSDDIVLDFFSGSATTAHAVIKQNAEDGGNRRFIAVQI 450
>gi|152982005|ref|YP_001354446.1| phage related DNA methyltransferase [Janthinobacterium sp.
Marseille]
gi|151282082|gb|ABR90492.1| phage related DNA methyltransferase [Janthinobacterium sp.
Marseille]
Length = 474
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/291 (17%), Positives = 89/291 (30%), Gaps = 55/291 (18%)
Query: 21 DKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V+ L + L F PPY Q +
Sbjct: 180 HRLICGDATDPAVVATLMQGDTAQLCFTSPPYGNQRDYTSG------------------G 221
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILNDI 129
+DA R + +G + + I L + +
Sbjct: 222 IADWDALMRGVF--AHLPMAGDGQVLINLGLIHRDNEVIPYWDGWLSWMRSQGWRRFAWY 279
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALK------------- 172
VW + MP R + E + K
Sbjct: 280 VWDQGPGMPGDWQGRLAPSFEFVFHFNRSTRKPNKIVPCKHAGQESHLRADGSSTAMRGK 339
Query: 173 ------AANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
++ + + R + K G+ + HP P AL + + T+ GD
Sbjct: 340 DGEVGGWTHKGQPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFAIEAYTEAGD 399
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
I+ +PF GSGT+ A++ R +E+ +Y+D+A KR P + L
Sbjct: 400 IVFEPFGGSGTTMLAAQRTGRLCRSMEIAPEYVDVAIKRFQQNHPGVPVTL 450
>gi|315445346|ref|YP_004078225.1| DNA modification methylase [Mycobacterium sp. Spyr1]
gi|315263649|gb|ADU00391.1| DNA modification methylase [Mycobacterium sp. Spyr1]
Length = 352
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 63/345 (18%), Positives = 99/345 (28%), Gaps = 102/345 (29%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++II G+++ L LP SVD + PPY N +
Sbjct: 9 RNRIIVGDALKKLSGLPDASVDCVITSPPYFSLRNY-----------GADGQIGLERHVD 57
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIF---------------RIGTMLQNLNF 123
+ A RVL P GT W+ +G ++ R+ LQ +
Sbjct: 58 QWVDHLAAISGQVARVLVPTGTYWLNLGDTYSAHQAQGAARKSLLMAPERLALRLQRDGW 117
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK----------------------- 160
I N I+W K NPMP R AHE + + P+
Sbjct: 118 IIRNKIIWAKPNPMPTSIPDRLNTAHEVIYVMARQPQYFFDLDAIRVPHVSVRTTVSGSG 177
Query: 161 ----AKGYTFNYDALKAANEDVQ----------MRSDWLIPICSGSERLRNKDGEKLHPT 206
+ + + N D L + H
Sbjct: 178 SGSGRNHTPLHREPWRGPNSDTVTGLAALKASGQVGHPLGKNPGDVWTITPGGYRSAHHA 237
Query: 207 QKPEALLSRILVSSTK--------------------------------------PGDIIL 228
P L R++ + ++L
Sbjct: 238 IYPLTLAERMIAAGCPEARCARCRLPWRRKVIRGLGRTATRAALTPTCTCTTGSEAGLVL 297
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
DPF GSGT+ A+ R ++GIE+ D+ A +RI +
Sbjct: 298 DPFMGSGTTAVAAQNYGRDWLGIELNPDFAATARQRIVEERRKPP 342
>gi|269976662|ref|ZP_06183639.1| site-specific DNA-methyltransferase [Mobiluncus mulieris 28-1]
gi|307701482|ref|ZP_07638501.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
gi|269935136|gb|EEZ91693.1| site-specific DNA-methyltransferase [Mobiluncus mulieris 28-1]
gi|307613392|gb|EFN92642.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
Length = 622
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/218 (12%), Positives = 67/218 (30%), Gaps = 13/218 (5%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD 61
+ ++ F+ + I+G+++ VL+ L V +I+ DPPYN +
Sbjct: 82 EKSRSRDGKDGSFDSDNIYIEGDNLEVLKLLQRGYHGKVKMIYIDPPYNTGHDFVYKDKF 141
Query: 62 HSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
++ + + + L R +L +G +++ +
Sbjct: 142 SDTIENYKEQAGLTGQSNAETSGRYHSDWCSMMYPRLKLARELLSDDGVIFISIDDNENR 201
Query: 113 RIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + + P + N+H+ ++ + S +
Sbjct: 202 NLRILCDEVFGEPNFVAQLIWERAFSPKNDAKFVSNSHDYVLVYAKSIEHFTIGRLPRTE 261
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
A +D P S + ++ +P P
Sbjct: 262 TANARYTNPDNDPRGPWMSDNMTVKTYSESTDYPITTP 299
Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 30/142 (21%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKL------ 244
E + DG+ KP LL R++ +++ D +LD F GS + K
Sbjct: 371 KELVSLFDGKSYFDGPKPTRLLQRLMTLANLSNNDTVLDFFSGSASMAHSVFKQEIERGT 430
Query: 245 RRSF---------------------IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
F ++ ++ I A +I S N +L + +
Sbjct: 431 GYHFVLVQLPEGTDPKREAYKDGYATLCDIGEERIRRAGDKIKSDLDESNRQLMLGEEPK 490
Query: 284 TEPRVAF--NLLVERGLIQPGQ 303
P + F L + G+ +P
Sbjct: 491 QLPDIGFRVFTLDDSGIEKPQP 512
>gi|255012034|ref|ZP_05284160.1| DNA methylase N-4/N-6 domain protein [Bacteroides fragilis 3_1_12]
gi|313149874|ref|ZP_07812067.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
fragilis 3_1_12]
gi|313138641|gb|EFR56001.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides
fragilis 3_1_12]
Length = 447
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 53/313 (16%), Positives = 93/313 (29%), Gaps = 53/313 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ + +SV LI PPY + S+E Y
Sbjct: 1 MSLVSNESVQLIVTSPPYWQLKDY-----------GSDKQIGFNDSYEEYINNLNLVWNE 49
Query: 92 CRRVLKPNGTLWVIGSYHN--------------------------IFRIGTMLQNLNFWI 125
C RVL+P L + +G+++ +
Sbjct: 50 CFRVLEPGCRLCINIGDQFARSVYYSRYKVIPIHSEIIRFCEEVGFDYMGSIVWQKPTSM 109
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+ P RG + E ++ KA + + +
Sbjct: 110 HTTGGEKIMGSFPYPRGGIVKIDFEHILLFKKIGKATPISREKKEASKFTIEEWNE-YFS 168
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
G R + H PE L R++ + GD +LDPF GSGT+ VA+ L
Sbjct: 169 SHWTFGGAR------QDKHIAVFPEELPKRLIRMFSFVGDTVLDPFMGSGTTALVARNLN 222
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT---------EPRVAFNLLVER 296
R+ IG E+ ++++ +++ G+ T P ++
Sbjct: 223 RNSIGYEINKNFLQFYKEKVVLSNGNGDTVFDAKEDHSTIDLQCALDNLPYRFVDVHKLD 282
Query: 297 GLIQPGQILTNAQ 309
LI Q + +
Sbjct: 283 KLIDVKQNIYGNK 295
>gi|224369183|ref|YP_002603347.1| two component protein (ParB-like partition domain/site-specific DNA
modification methylase) [Desulfobacterium autotrophicum
HRM2]
gi|223691900|gb|ACN15183.1| two component protein (ParB-like partition domain/site-specific DNA
modification methylase) [Desulfobacterium autotrophicum
HRM2]
Length = 530
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/316 (17%), Positives = 101/316 (31%), Gaps = 47/316 (14%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ ++ + +LP +SV L+ PPY + +L +++ +
Sbjct: 225 VYFKDAKD-MAELPKESVGLVLTSPPYFNGMEYEL-----------------GFTYDEHL 266
Query: 83 AFTRAWLLACRRVLKPNGTLWVI----------GSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ L RVL G L + N RI ML N +
Sbjct: 267 ENVKGVLAESARVLVKGGILALNVADITNFKGKNGTDNRSRIQPMLHFYNLCLRKHGFHL 326
Query: 133 KSNPMPNFRGRRFQNA----------HETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
+ + F H + D ++E++ ++S
Sbjct: 327 QDEIIWVKDSNSFTQDDAVNYTDKTVHTQYRIVDRHEPIYIFKKKGDRPIPSDENIILQS 386
Query: 183 DWLIPIC----SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ ++ + HP P+ L RI+ + GD +LDPF GSGT+
Sbjct: 387 RISKEEWKVYAPSAWQISPAPRNQGHPNAFPDELARRIIRMYSFVGDTVLDPFLGSGTTV 446
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
VA++L R +G E Y +++ + E R L
Sbjct: 447 KVARELDRDGVGYERDLRYKAAIMRKLGVAEVEERQEPVSDFAARQ-----LEELEANQP 501
Query: 299 IQPGQILTNAQGNISA 314
+P + ++G + A
Sbjct: 502 GKPKVEIMASKGMMEA 517
>gi|284097306|ref|ZP_06385442.1| type III restriction-modification system methyltransferase
[Candidatus Poribacteria sp. WGA-A3]
gi|283831180|gb|EFC35154.1| type III restriction-modification system methyltransferase
[Candidatus Poribacteria sp. WGA-A3]
Length = 545
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 45/266 (16%), Positives = 95/266 (35%), Gaps = 27/266 (10%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
+ SL + ++ S+ + + II G+++ L+ L A V+ I+ DPPYN G +Y
Sbjct: 29 RKSLPLKGSKPSLDD--NLIIHGDNLHALKALMPRYAGRVNCIYIDPPYNTGNEGWIY-- 84
Query: 61 DHSLVDAVTDSWDKFSS---------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ ++ + W K S + + L R +L +G L++ +
Sbjct: 85 NDNVNSPMMQEWLKGKSPVDGEDLERHDKWLCMMWPRLHLLRELLAEDGVLFISIDDNEQ 144
Query: 112 FRIGTMLQNLNFW-ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
R+ M+ + + + P + F H+ ++ + + +
Sbjct: 145 HRLRMMMDEIFSGENFVATIIWEKVYSPKSSAKHFSENHDFIVAYARNKEEFKLGLLPRT 204
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+A + +D RN + + + P R++ S PG+
Sbjct: 205 EEADSRYANPDNDPRGMWKPSDLSARNPYSKGTYSIKCPRG---RVIK-SPPPGN----- 255
Query: 231 FFG-SGTSGAVAKKLRRSFIGIEMKQ 255
F+ S + R + G + Q
Sbjct: 256 FWRYSEEKFWELDRDNRIWWGEDRNQ 281
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDY 257
T KP LL+RI+ ST IILD F GSGT+ R FI E +
Sbjct: 328 FTTTKPVELLTRIIRLSTDKDSIILDSFAGSGTTAHAVLALNKEDGGNRKFILAECEDYA 387
Query: 258 IDIATKR----IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
I +R I + + L G + + + G+ L +
Sbjct: 388 DTITAERVRRVIKGLPKAKDENLKNGLGG-SFTYCTLGDEISPEKMLTGENLPDY 441
>gi|168494847|ref|ZP_02718990.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
gi|168494889|ref|ZP_02719032.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
gi|168494942|ref|ZP_02719085.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
gi|168495009|ref|ZP_02719152.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
gi|307126208|ref|YP_003878239.1| DNA methylase [Streptococcus pneumoniae 670-6B]
gi|183575130|gb|EDT95658.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
gi|183575191|gb|EDT95719.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
gi|183575250|gb|EDT95778.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
gi|183575298|gb|EDT95826.1| DNA methylase [Streptococcus pneumoniae CDC3059-06]
gi|306483270|gb|ADM90139.1| DNA methylase [Streptococcus pneumoniae 670-6B]
Length = 224
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/250 (17%), Positives = 92/250 (36%), Gaps = 32/250 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K + G+ + ++++ P DL DPPY + + V+ + + +
Sbjct: 3 KFLNGDCMDIMKQYPDNYFDLAIVDPPYFSGPEKRKFYGRKISPIGVSRLYGE---ISEW 59
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R + RV K I+ + + + + +
Sbjct: 60 KIPNRDYFDELFRVSKN----------QIIWGVNYFDYSFGSGRI----------VWDKV 99
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + S + + + + N +Q +S I G+ + +
Sbjct: 100 NGQSSFSDCEIAYCSYHDSTRLFRYMW------NGMMQGKSISEGHIQQGN---KALNEV 150
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
++HPTQKP L +L + K GD ILD GS +S +L ++G E+ + ++A
Sbjct: 151 RIHPTQKPVNLYLWLLQTYAKEGDKILDTHVGSASSLIACGELGFDYVGCEIDKSIFNLA 210
Query: 262 TKRIASVQPL 271
+R+ + +
Sbjct: 211 QQRLDAYEKQ 220
>gi|150391731|ref|YP_001321780.1| DNA methylase N-4/N-6 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149951593|gb|ABR50121.1| DNA methylase N-4/N-6 domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 411
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 36/260 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S L +L+ DPPYN+ G + + D
Sbjct: 168 HRLVCGDSTKAETFTLLMDGKLANLVVTDPPYNVNYEGSAGKIKN----------DNLGD 217
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
Y F A + + +++V + F++ +W+K + +
Sbjct: 218 SVFY-EFLLAAFTNTEAAMTQDSSIYVFHADTEGLNFRKAFAEAGFYLSGTCIWKKQSLV 276
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
++Q+ L K Y E
Sbjct: 277 LGRSPYQWQHE-PVLFGWKKKGKHNWYADRKQTTIWEFE--------------------K 315
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HPT KP AL++ +++S+ I+LDPF GSG++ + +R IE+ + +
Sbjct: 316 PKKNGSHPTMKPVALVAHPILNSSLSNCIVLDPFGGSGSTLIACDQTQRICHTIELDEKF 375
Query: 258 IDIATKR-IASVQPLGNIEL 276
D+ +R I+ Q ++ L
Sbjct: 376 CDVIVERFISGAQSSDDVYL 395
>gi|328552988|gb|AEB23480.1| Modification methylase BamHII [Bacillus amyloliquefaciens TA208]
Length = 279
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/265 (18%), Positives = 87/265 (32%), Gaps = 23/265 (8%)
Query: 20 KDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQ------------LYRPDHSLVD 66
+KI + + +++ + ++DL PPY+ N LYR
Sbjct: 3 LNKIHNNDCVQFMKENIGDCTIDLTVTSPPYDDLRNYNGYSFNFEETAQELYRVTKEGGV 62
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
V DK T + + L Y
Sbjct: 63 VVWVVGDKTHKGSE----TGSSFRQALYFKELGFNLHDTMIYEKDSISFPDKNRYYQIFE 118
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
++ K P +N K + + ++ +++
Sbjct: 119 YMFIFSKGKPKTINLLADRKNKWYN---GKKHIKGHYRKMDGEKVRHHKQNLLKEFGVRF 175
Query: 187 PIC---SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
I +G ++ HP PE L ++S + GDI+ DPF GSGT+ +A
Sbjct: 176 NIWRIPNGHQKSTLDKIAFQHPAIFPEKLAEDHILSWSNEGDIVFDPFMGSGTTAKMAAL 235
Query: 244 LRRSFIGIEMKQDYIDIATKRIASV 268
R +IG E+ ++Y DIA +R+ +
Sbjct: 236 NNRKYIGTEISKEYCDIANERLKNY 260
>gi|154499070|ref|ZP_02037448.1| hypothetical protein BACCAP_03062 [Bacteroides capillosus ATCC
29799]
gi|150271910|gb|EDM99136.1| hypothetical protein BACCAP_03062 [Bacteroides capillosus ATCC
29799]
Length = 529
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 11/220 (5%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ ++ S N ++ ++ +I G+++ L+ L V I+ DPPYN G +
Sbjct: 24 LERRYSFDENGQMDADNGSENMVIPGDNLEALKALLPRYEGRVKCIYIDPPYNTGNEGWV 83
Query: 58 YRPDHSL-------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
Y + + + V + S + + L R+L +G +++
Sbjct: 84 YNDNVNDPKIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLAEDGAIFISIDDVE 143
Query: 111 IFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + ++ V + N P + F H+ ++ + +
Sbjct: 144 FYNLRSICNEVFGEHNFITTVIWRKNFSPKSTAKHFSEDHDYILVFAKNADIWLPHKMPR 203
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
K +D P SG RN G+ L+ P
Sbjct: 204 TEKQNKAYKNPDNDPRGPWTSGDLAARNYYGKGLYSITTP 243
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ V ++ W ++ + + G+ T KP L+ RIL ++ P IILD
Sbjct: 294 DGVVPQTYWPYEEVGHTQDAKKEIKAIFGGDMPFDTPKPSRLIERILQIASDPDSIILDS 353
Query: 231 FFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIAS 267
F GSGT+ + R FI +EM I +R+
Sbjct: 354 FAGSGTTAHAVLNMNKADGGNRKFILVEMMDYADSITAERVKR 396
>gi|312866071|ref|ZP_07726292.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
gi|311098475|gb|EFQ56698.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
Length = 296
Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/291 (22%), Positives = 108/291 (37%), Gaps = 48/291 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSFE- 79
+SI L ++P S+ I +D PY + + L+ +S + + S K F+
Sbjct: 6 FYNEDSIVGLSRIPTNSIHSIISDIPYGIDYDEWDVLHSNTNSGLGGSSLSQTKNKLFKR 65
Query: 80 -----------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
Y + +W RVLKP G+ +V R+ L+
Sbjct: 66 RGKPLNGWSEADKQRPLEYQNWVSSWSKEWFRVLKPGGSAFVFAGRKYSHRVIIALEEAG 125
Query: 123 FWILNDIVWRKSNPMP-------------------NFRGRRFQNA---HETLIWASPSPK 160
F + + W + N+ G R N E ++W K
Sbjct: 126 FTFKDMLSWERDKAPHRAQRLSKIYERRGDYENQKNWEGWRVANLRPLFEPILWLQKPYK 185
Query: 161 AKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERLRNK---DGEKLHPTQKPEALLS 214
G N + + A ED + + + + S ++ + D K H TQKP L+
Sbjct: 186 TGGTIANNVLENGVGAWYEDALKKWNINQDMSNQSNMIKVEFQPDDRKYHTTQKPINLMK 245
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++ T G +ILDPF GS T+ AK+L R +IG E + R+
Sbjct: 246 LLVELVTVEGQVILDPFAGSATTLLAAKELHRKYIGFEKDTKIFESGLSRL 296
>gi|294340230|emb|CAZ88602.1| Phage related DNA methyltransferase (cytosine-N(4)-specific)
[Thiomonas sp. 3As]
Length = 454
Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 49/292 (16%), Positives = 87/292 (29%), Gaps = 55/292 (18%)
Query: 20 KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I G+S V + + L F PPY Q +
Sbjct: 161 RHRLICGDSTDASVVAALMEGERAQLCFTSPPYGNQRDYTSG------------------ 202
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILND 128
+DA R + + V I ++ + +
Sbjct: 203 GIADWDALMRGVFANL--PTTADAQVLVNLGLIHRDNEFIPYWNAWVEWMRTTGWRRFAW 260
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALKAANEDVQMRSDW 184
VW + MP RF + E + K F +
Sbjct: 261 YVWDQGPGMPGDWSGRFAPSFEFVFHFNRESRKPNKIVPCKFAGQETHLRADGSSTAMRG 320
Query: 185 LIPICSG-------------------SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPG 224
G R + K G+ + HP P L ++ + T
Sbjct: 321 KDGEVGGWTAAGQPTQDFRIPDSVIRVMRHKGKIGQDIDHPAVFPVVLPEFVIEAFTDQA 380
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
DI+ +PF GSG++ A++ R+ +E+ +Y+D+A +R P + L
Sbjct: 381 DIVFEPFGGSGSTMLAAERTGRTCRAVEIAPEYVDVAIRRFLQNHPQEEVTL 432
>gi|302035483|ref|YP_003795805.1| site-specific DNA-methyltransferase N-4/N-6 (phage related)
[Candidatus Nitrospira defluvii]
gi|300603547|emb|CBK39877.1| Site-specific DNA-methyltransferase N-4/N-6 (phage related)
[Candidatus Nitrospira defluvii]
Length = 469
Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 50/291 (17%), Positives = 93/291 (31%), Gaps = 55/291 (18%)
Query: 21 DKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ V+ L + L F PPY Q +
Sbjct: 177 HRLICGDATDSSVVATLMQGDAARLCFTSPPYGNQRDYTSG------------------G 218
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILNDI 129
+ +D R+ + +G + V I L + +
Sbjct: 219 VKDWDGLMRSVFGLV--PMADDGQVLVNLGLIHRDNEVIAYWDGWLDWMRTQGWRRFAWY 276
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWAS----PSPKAKGYTF------------------- 166
VW + MP R + E + + K
Sbjct: 277 VWDQGPGMPGDWQGRLAPSFEFVFHFNRASLKPNKIVPCKHAGLESHLRADGSSTAMRGK 336
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
+ + ++ + + R + K G+ + HP P AL ++ + T GD
Sbjct: 337 DGEVGGWTHKGQPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFVIEAYTDTGD 396
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
++ +PF GSGT+ A++ R +E+ +Y+D+A KR P + L
Sbjct: 397 LVFEPFGGSGTTMLAAQRTGRVCRTVEIAPEYVDVAIKRFQQNHPGVPVTL 447
>gi|222112352|ref|YP_002554616.1| DNA methylase n-4/n-6 domain-containing protein [Acidovorax ebreus
TPSY]
gi|221731796|gb|ACM34616.1| DNA methylase N-4/N-6 domain protein [Acidovorax ebreus TPSY]
Length = 394
Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/294 (22%), Positives = 99/294 (33%), Gaps = 65/294 (22%)
Query: 22 KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
KI +G+S+ L K+ SV+LI PP+ L V
Sbjct: 78 KIYQGDSLEYLHHKVKPGSVNLIMTSPPFGL----------------VRKKSYGNEDAAE 121
Query: 81 YDAFTRAWLLACRRVLKPNGTL-------WVIGSYHNIFRIGTMLQN----LNFWILNDI 129
Y + R + RVLK +G+L W GS +L F + +
Sbjct: 122 YCEWFRPFAEGFHRVLKDDGSLVIDIGGAWKSGSPTRSLYHFKLLVMLCEEYGFHLAQEH 181
Query: 130 VWRKSNPMP------NFRGRRFQNAHETLIWASPSPKA--------------------KG 163
W +P N R R ++A + W S +P G
Sbjct: 182 YWWNPAKLPSPAEWVNVRRVRVKDAINCVWWLSKTPFPKASNKRVLAPYSDSMKGLLKNG 241
Query: 164 YT--------FNYDALKAANEDVQMRSDWLIPICSGS---ERLRNKDGEKLHPTQKPEAL 212
YT D N + I + + +G +HP + P L
Sbjct: 242 YTAKLRPSGHDISDKFSKDNGGSVPPNLLAIANTESNGVYQEYCRANGIDIHPARFPALL 301
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ T PGD+++DPF GS +G VA+ L R + IE+ +YI R
Sbjct: 302 PEYFIRFLTDPGDLVVDPFGGSCVTGMVAEALGRKWACIELSSEYIRGGIGRFQ 355
>gi|11995224|ref|NP_072082.1| PvuIIM [Proteus vulgaris]
gi|1709165|sp|P11409|MTP2_PROVU RecName: Full=Modification methylase PvuII; Short=M.PvuII; AltName:
Full=N-4 cytosine-specific methyltransferase PvuII
gi|1256542|gb|AAA96336.1| PvuIIM [Proteus vulgaris]
Length = 336
Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 59/293 (20%), Positives = 103/293 (35%), Gaps = 67/293 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+S+ +LE P +S+ L+ PP+ LQ + + Y
Sbjct: 31 YIGDSLELLESFPDESISLVMTSPPFALQRKKEYGNLEQ----------------HEYVD 74
Query: 84 FTRAWLLACRRVLKPNGTLWVIG-----------SYHNIFRIGTMLQNLNFWILNDIVWR 132
+ ++ + LKP+G+ V S +N + M+ + F++ D W
Sbjct: 75 WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAEDFYWF 134
Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDV 178
+ +P N R R ++A T+ W S + K Y+ L +
Sbjct: 135 NPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIEDPDKF 194
Query: 179 QMRSDWLIPICSGSERLRNKDGE--------------------------KLHPTQKPEAL 212
G ++ G K HP + P L
Sbjct: 195 YTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKL 254
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ T+P D+++D F GS T+G VA++ R +I EMK +Y+ + R
Sbjct: 255 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 307
>gi|227875052|ref|ZP_03993197.1| ParB family DNA methylase [Mobiluncus mulieris ATCC 35243]
gi|306817339|ref|ZP_07451084.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
35239]
gi|227844330|gb|EEJ54494.1| ParB family DNA methylase [Mobiluncus mulieris ATCC 35243]
gi|304649780|gb|EFM47060.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
35239]
Length = 411
Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 57/281 (20%), Positives = 103/281 (36%), Gaps = 35/281 (12%)
Query: 20 KDKIIKGN--SISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+ S+ +E L +L+ DPPYN+ ++ DK
Sbjct: 161 RHRLVCGDATSVEDVELLMDGKRANLVLTDPPYNVAFESG---------SGLSIKNDKMD 211
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ YD F + V + + +V + F++ +W K +
Sbjct: 212 GDKFYD-FLLSAFSNMVGVCEKGASAYVFHADTEGLNFRRAFVEAGFYLSGCCIWVKDSL 270
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L + K K Y I + ++ R
Sbjct: 271 VLGRSPYQWQHE-PVLFGWVKTGKHKWYADRKQT----------------TIWNFAKPRR 313
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N D HPT KP LL+ + +ST+ I+LD F GSG++ A+ R +E+ +
Sbjct: 314 NAD----HPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMAAEATDRICYCMELDEK 369
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
Y + +R A +T L G + + VE G
Sbjct: 370 YASVILRRYAEHTG-DAAGITCLRGGKEYAYLDLVRDVEGG 409
>gi|291164792|gb|ADD80822.1| DNA methylase [Rhodococcus phage ReqiDocB7]
Length = 236
Score = 99.7 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 27/255 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
E I G+++ + LP+ SV+ + DPP+ + + A + D S
Sbjct: 1 METVHDIWLGDAVDLCAILPSGSVNCVITDPPFGIDAISNQSVTEKGKEYARKIAND--S 58
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI---GTMLQNLNFWILNDIVWRK 133
+ + + + L++ S+H + L F N ++W
Sbjct: 59 DPQVAIEVFNKVMDSLLPKTSDDCDLYIFTSWHVLDHWIGVAHDLSRHGFTYKNMLIWE- 117
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N N+ T +Y+ + + ++R+D P
Sbjct: 118 ----KNGASMGDTNSWGT---------------SYEVILFLKKGKRIRTDKRRPGVIRVG 158
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+L +HP +KP LL +L S+ GD+++DPF GSG+ AK++ R+ I +E+
Sbjct: 159 QLP--ANTLIHPHEKPVELLQILLRHSSSEGDLVVDPFGGSGSLVRAAKEIGRNAIAMEL 216
Query: 254 KQDYIDIATKRIASV 268
++ A +++
Sbjct: 217 DENNWKKAVRKLQDD 231
>gi|313143927|ref|ZP_07806120.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
gi|313128958|gb|EFR46575.1| DNA methylase [Helicobacter cinaedi CCUG 18818]
Length = 149
Score = 99.7 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +G+ ++L ++ +S D+IFADPPY L +G L +V WD+ + + D
Sbjct: 21 LYQGDCNALLPQM-KESFDVIFADPPYFLSNDG-LSIQSGKIVSVNKGEWDRGENIDEID 78
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
F W+ + LKP G++ + G+YHNIF +G LQ L+F ILN I W+K+NP PNF
Sbjct: 79 RFNMEWISNAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSC 138
Query: 143 RRFQNAHETL 152
R ++ E +
Sbjct: 139 RYLTHSTEQI 148
>gi|304390296|ref|ZP_07372249.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326052|gb|EFL93297.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 416
Score = 99.7 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 57/281 (20%), Positives = 103/281 (36%), Gaps = 35/281 (12%)
Query: 20 KDKIIKGN--SISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+ S+ +E L +L+ DPPYN+ ++ DK
Sbjct: 166 RHRLVCGDATSVEDVELLMDGKRANLVLTDPPYNVAFESG---------SGLSIKNDKMD 216
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ YD F + V + + +V + F++ +W K +
Sbjct: 217 GDKFYD-FLLSAFSNMVGVCEKGASAYVFHADTEGLNFRRAFVEAGFYLSGCCIWVKDSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L + K K Y I + ++ R
Sbjct: 276 VLGRSPYQWQHE-PVLFGWVKTGKHKWYADRKQT----------------TIWNFAKPRR 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N D HPT KP LL+ + +ST+ I+LD F GSG++ A+ R +E+ +
Sbjct: 319 NAD----HPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMAAEATDRICYCMELDEK 374
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
Y + +R A +T L G + + VE G
Sbjct: 375 YASVILRRYAEHTG-DAAGITCLRGGKEYAYLDLVRDVEGG 414
>gi|169835025|ref|YP_001715839.1| DNA methylase [Clostridium botulinum A3 str. Loch Maree]
gi|169409132|gb|ACA57542.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum A3 str.
Loch Maree]
Length = 254
Score = 99.7 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 87/263 (33%), Gaps = 38/263 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I GN + +++K+ KS+D++ +D P+ + + WDK FE
Sbjct: 5 NNIYLGNCLEIMKKIDDKSIDMVLSDLPFGM----------------TNNEWDKAIPFE- 47
Query: 81 YDAFTRAWLLACRRVLKPNGTLW-----VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
R+ K N ++ V S + + + + +N
Sbjct: 48 ------PMWQEINRIAKDNASIALMAAGVFTSELVVSNKKYYRYSWIWKPKEKSNFLNAN 101
Query: 136 PMPNFRGRRFQNAHETLIWA---SPSPKAKGYTFNYDALKAANEDVQM-------RSDWL 185
MP + ++ L + AN ++D
Sbjct: 102 RMPLRQHIDIPIFYKNLPVYNPQKTYGHKPVKKYKQHTTAGANYGKTKIGMEGGGQTDRY 161
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
K +++HPTQKP L ++ + T I LD GS
Sbjct: 162 PTTVIDIPYNTIKIKDRIHPTQKPIELYEYLIKTYTNEEGIALDFTAGSCVLAEACINTN 221
Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
R++I IE ++ Y + A +RI
Sbjct: 222 RNYICIEKEKKYCNKAKERIKLH 244
>gi|51980192|ref|YP_077259.1| Cytosine methylase, similar to N4-cytosine methylase [Sulfolobus
virus STSV1]
gi|51890325|emb|CAH04249.1| Cytosine methylase, similar to N4-cytosine methylase [Sulfolobus
virus STSV1]
Length = 297
Score = 99.7 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/271 (18%), Positives = 90/271 (33%), Gaps = 47/271 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ G+S + ++++ SV L+ PPY +A D D F ++
Sbjct: 5 NLIVFGDSRN-MKEISDGSVHLVVTSPPY---------------FNAPFDYPDLFKDYDE 48
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNFWILNDIVWR 132
+ R RVL + I I ++ F + I+W+
Sbjct: 49 FLGLIRDVARELYRVLAEGRIACFVTQDVRINGKLYPVTADILRIMMEEGFTYRDRIIWK 108
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD------------------ALKAA 174
K R ++
Sbjct: 109 KPEGYVRISRRSGVQLQHPYPMYFYPDNIYEEILIMQKGEYKYPKNKAELESSRIDIQEF 168
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
N + S W I ++ + E + PE + R++ + G+ +LDPF GS
Sbjct: 169 NREKWYLSVWEITNVLP---VKGRIEEGI--AAFPEEIPYRLIKLFSYVGETVLDPFMGS 223
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T+ VA +LRR +G E+ + +D+ K++
Sbjct: 224 ATTLKVAVELRRKAVGYEIDLELLDVVKKKL 254
>gi|326784623|ref|YP_004324886.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
gi|310004656|gb|ADO99048.1| DNA adenine methylase [Prochlorococcus phage P-SSM7]
Length = 253
Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 51/246 (20%), Positives = 81/246 (32%), Gaps = 39/246 (15%)
Query: 33 EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
+ SVD++ D PY WD + W
Sbjct: 23 PTIADNSVDMVLCDLPYGT----------------TACKWDSIIPLDE------LW-KQY 59
Query: 93 RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-NAHET 151
R+ K +G + V + I N + +W K + +HE
Sbjct: 60 NRICKEDGAM-VFTAAQPFTAILAASNIKNL--KYEWIWEKPQGTNPMNAKIMPLKSHEN 116
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER------------LRNKD 199
++ Y + + + + R L+ K
Sbjct: 117 ILVFYRKKPTYNPQMWYSTPYSGFKSDTAKIGEVYGEAQSKHRDNPEGSRYPKTILKYKQ 176
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ LHPTQKP L+ ++ + T G+ +LD GSGT+G L R+FIG+E + Y
Sbjct: 177 EKGLHPTQKPVGLMEYMIKTYTNKGETVLDSTMGSGTTGLACVNLDRNFIGMESDEKYFK 236
Query: 260 IATKRI 265
IA RI
Sbjct: 237 IAEDRI 242
>gi|217978104|ref|YP_002362251.1| Site-specific DNA-methyltransferase (adenine-specific)
[Methylocella silvestris BL2]
gi|217503480|gb|ACK50889.1| Site-specific DNA-methyltransferase (adenine-specific)
[Methylocella silvestris BL2]
Length = 631
Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 23/223 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
E + E ++ ++G+++ VL+ L V LI+ DPPYN + PD+
Sbjct: 88 PEREKSANFDEAENVFVEGDNLEVLKLLQKAYFGKVKLIYIDPPYNTG--NEFIYPDNFT 145
Query: 65 V---------DAVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGS 107
V D +FS+ + L R +L+ +G +++
Sbjct: 146 ETLETYLAYTGQVDDERKRFSTNTDQSGRYHSRWMNMMFPRLYLARNLLRDDGAIFISID 205
Query: 108 YHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + + ++ + + P + F + H+ ++ + +
Sbjct: 206 DNEVHNLRALMDQIFGEENFVATIIWQKVYAPKNSAKFFSDDHDYILVYARNSDQWKPEL 265
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ D P S + RN GE + P
Sbjct: 266 LERTPEQDALYKNPDKDQRGPWMSDNLTARNFYGEGSYEVTGP 308
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 208 KPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
KP L+ R++ +TK GDI+LD F GSGT+G + RR FI +++
Sbjct: 398 KPVNLIRRMIKIATKSDGDIVLDFFAGSGTTGQAVIEQSLDDGIRRRFIMVQL 450
>gi|312864600|ref|ZP_07724831.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
gi|311099727|gb|EFQ57940.1| DNA (cytosine-5-)-methyltransferase [Streptococcus downei F0415]
Length = 456
Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 19/193 (9%)
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
R VL +G++++ +H I ++ + S + F H+
Sbjct: 2 LREVLSDDGSIYIHLDWHKAHYIKVLMDEVFGEGRFINNIIWSYRTGAGGKKEFNKQHDD 61
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDW------LIPICSGSERLRN-------- 197
++ S + + A +++ +G R
Sbjct: 62 ILLYSKTEHRIFNQLKEKSYTKAKGRKAGITNYGGSNTEFFEDSNGVYRWSTMRDVWDIP 121
Query: 198 -----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+PTQKPE LL RI+ S+ GD++LD F GSGT+ AVA+KL R +I ++
Sbjct: 122 YINSQAKERVGYPTQKPEKLLERIIKVSSNEGDLVLDCFGGSGTTAAVAEKLGRRWITVD 181
Query: 253 MKQDYIDIATKRI 265
I KRI
Sbjct: 182 AGILSIYTIQKRI 194
>gi|188574834|ref|YP_001911763.1| methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188519286|gb|ACD57231.1| methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 543
Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 11/195 (5%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W + II+G++ L L ++ I+ DPPYN +Y D D +F
Sbjct: 61 WDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVY------NDRFVDKTHRF 114
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ F L + +L +G ++V + +FR+G ++ V +
Sbjct: 115 R-HSLWLEFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGEDNFIANVIWQK 173
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
P + F + HE ++ S + + + +D +G
Sbjct: 174 VYSPKNTAQHFSDDHEYILTYSRKKEDWVPNPISRSASQDSAYKNRDNDPRGVWKAGDMS 233
Query: 195 LRNKDGEKLHPTQKP 209
RN E + P
Sbjct: 234 ARNFYSEGNYSITTP 248
>gi|58583834|ref|YP_202850.1| methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84625637|ref|YP_453009.1| methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58428428|gb|AAW77465.1| methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84369577|dbj|BAE70735.1| methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 543
Score = 99.3 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 11/195 (5%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W + II+G++ L L ++ I+ DPPYN +Y D D +F
Sbjct: 61 WDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVY------NDRFVDKTHRF 114
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ F L + +L +G ++V + +FR+G ++ V +
Sbjct: 115 R-HSLWLEFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGEDNFIANVIWQK 173
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
P + F + HE ++ S + + + +D +G
Sbjct: 174 VYSPKNTAQHFSDDHEYILTYSRKKEDWVPNPISRSASQDSAYKNRDNDPRGVWKAGDMS 233
Query: 195 LRNKDGEKLHPTQKP 209
RN E + P
Sbjct: 234 ARNFYSEGNYSITTP 248
>gi|302876781|ref|YP_003845414.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
cellulovorans 743B]
gi|307687462|ref|ZP_07629908.1| DNA methylase N-4/N-6 domain-containing protein [Clostridium
cellulovorans 743B]
gi|302579638|gb|ADL53650.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulovorans
743B]
Length = 418
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 34/269 (12%)
Query: 20 KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ + L +LI +DPPY + D +T D
Sbjct: 168 RHRLMCGDATSEEDVATLMDGKKANLIVSDPPYGVSF---------QSSDGLTIQNDSIK 218
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E Y F L+ G ++ + Q+ F + +W K++
Sbjct: 219 GEEFY-NFLLQAFKNMAAHLEKGGAAYIFHADTEGLNFRRAFQDAGFHLAGCCIWVKNSL 277
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +Q HE +++ + + N D
Sbjct: 278 VLG--RSDYQWQHEPVLYGFLQNGKHPWYSDRSQTTIWNFDKP----------------- 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K HPT KP LL+ + +S++ I++D F GSG++ ++ R +E+ +
Sbjct: 319 --KRNKNHPTSKPLDLLAYPIGNSSQANGIVVDTFGGSGSTLMACEQTNRICHTMELDEK 376
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTE 285
Y + +R + + G++
Sbjct: 377 YASVILRRYVEDTGDADNVYVIRDGEQIP 405
>gi|308064158|gb|ADO06045.1| type III R-M system methyltransferase [Helicobacter pylori Sat464]
Length = 601
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 75/385 (19%), Positives = 123/385 (31%), Gaps = 73/385 (18%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG---------------------- 55
+ +IKGN++ L L K + I+ DPPYN +
Sbjct: 165 NYLIKGNNLIALHSLKKKFAKQIKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEA 224
Query: 56 --QLYRPDHSLVDAVTDS-----------------------WDKFSSFE---AYDAFTRA 87
+ D + D+ W +F S + A +
Sbjct: 225 AREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVGCISWKQFHSVKNDAANFSKNIE 284
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
++L + N N++++ + +P G+ +
Sbjct: 285 YILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPVWAKSGNNFSPYTFLNGKTWSP 344
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAAN-----------EDVQMRSDWLIPIC----SGS 192
T S N N E + + W +G
Sbjct: 345 PSGTFWRYSIGTLKDMEQNNRIVFNGKNPMAKRYLSEVAEGKKSSTFWDGSEVGYNLNGD 404
Query: 193 ERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
++ +G K+ KPEAL+SRIL ST D++LD F GSGT+ AVA K++R +IGI
Sbjct: 405 AEIKQLFNGNKVFNNPKPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGI 464
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
E I +R+ V ++ + F L E L QIL +
Sbjct: 465 EQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVFAELKEVNLEVKKQILNAKSKS 524
Query: 312 ISATVCADGTLIS----GTELGSIH 332
+ D + ++G IH
Sbjct: 525 ECLKIFNDLSERFLKRADCKIGEIH 549
>gi|219872033|ref|YP_002476408.1| Modification methylase HindIII [Haemophilus parasuis SH0165]
gi|219692237|gb|ACL33460.1| Modification methylase HindIII (M.HindIII) [Haemophilus parasuis
SH0165]
Length = 331
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/328 (19%), Positives = 113/328 (34%), Gaps = 65/328 (19%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSS 77
KD I +SI ++ + + S+ I +D PY + + L+ +S + + + K S
Sbjct: 2 KDCIYNDDSIIAIKNIKSNSIHSIISDIPYGIDYDDWDTLHSNTNSALGGSSIAQQKTSL 61
Query: 78 FE------------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
F+ Y + +W RVLK ++++ R+ +
Sbjct: 62 FKRRGKPLNGWSEADKRRPQEYQEWVESWSNEWYRVLKSGSSVFIFAGRQFAHRVIVAFE 121
Query: 120 NLNFWILNDIVWR----------------------KSNPMPNFRGRRFQNAHETLIWASP 157
N F + + W +R + E ++W
Sbjct: 122 NSGFTFKDMLSWERDKAPHRAQRISCVFEKRGDTFNQQKWAGWRVANLRPIFEPILWFQK 181
Query: 158 SPKAKG-------------YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
K G + N S+ + +R K H
Sbjct: 182 PYKTGGTLADNLIENEVGAWNENALTSWNIQRGALNHSNMFKVQVTTEDR-------KYH 234
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
TQKP L+ ++ TK I+LDPF GS ++ A++L R FIG E ++ DIA KR
Sbjct: 235 ITQKPLNLMKLLVELVTKEKQIVLDPFAGSASTLLAARELNRHFIGFEKNKEIYDIAVKR 294
Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNL 292
+ + + +L +P++
Sbjct: 295 LENT---LDNKLVHQKRDNNDPKIRNGR 319
>gi|320199117|gb|EFW73713.1| Adenine-specific methyltransferase [Escherichia coli EC4100B]
Length = 217
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 89/244 (36%), Gaps = 44/244 (18%)
Query: 34 KLPAKSVDL---IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
KL ++V L DPPY + R ++ V D W + +S
Sbjct: 2 KLKQQTVRLSRRTLTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN------------ 46
Query: 91 ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
RVLK + + ++ I R + F ++ +V+ KS + HE
Sbjct: 47 EMYRVLKKDALMVSFYGWNRIDRFMAAWKRAEFSVVGHLVFTKSY---TSKSAYVAYRHE 103
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ A D L G + HPT+KP
Sbjct: 104 CAYILAKGRPALPPKPLPDVLGW-----------------------KYSGNRHHPTEKPV 140
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y +R+A+VQ
Sbjct: 141 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLATVQR 200
Query: 271 LGNI 274
Sbjct: 201 AMQQ 204
>gi|153809570|ref|ZP_01962238.1| hypothetical protein BACCAC_03888 [Bacteroides caccae ATCC 43185]
gi|149127815|gb|EDM19039.1| hypothetical protein BACCAC_03888 [Bacteroides caccae ATCC 43185]
Length = 417
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 31/264 (11%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ +S +LE +P + PPY + +
Sbjct: 3 KNKLNQVYNIDSRHILESIPQNIEIQTTITSPPYFDMKDY-----------GSENQVGYG 51
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWILN 127
+E Y + ++ K +GTLW+I F + L+++ +++ +
Sbjct: 52 QIYEDYLNDLQNIFGQILKITKDDGTLWIIIDTFKRNNQVVSLPFDLANKLKDIGWFLQD 111
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
I+W+K +P Q E +++ S SPK K +
Sbjct: 112 IIIWKKDKTVPWSTNGFMQRKFEYILFFSKSPKYKSNKDKVRIYDTSQLKKWWVKYPERY 171
Query: 188 ICSGSE-----------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
G + D H P+ L++ ++ ST DIILDPF GSGT
Sbjct: 172 NPKGKALDEIWEFPIPVQGSWGDEYIRHFCPLPKELVATMIQISTDENDIILDPFAGSGT 231
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDI 260
+ ++R++IG E+ +YI +
Sbjct: 232 VLTQSAYMKRNYIGFELNNEYIKM 255
>gi|308185150|ref|YP_003929283.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
SJM180]
gi|308061070|gb|ADO02966.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
SJM180]
Length = 287
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 105/280 (37%), Gaps = 38/280 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFE 79
+K+ NS + + ++P SVD I PPY + A + +E
Sbjct: 4 NKVFYHNSTN-MHEVPDNSVDSIITSPPYFNIKDYTKNGTQDLQHSAQHVEDLGALEKYE 62
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND- 128
Y L C R LKPNG L + + + H I + ++ IL+D
Sbjct: 63 DYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQRSILHDL 122
Query: 129 ---------------IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYT 165
+W+++NP P R QN E + K K T
Sbjct: 123 NNTLENKPKMFLLDVYIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPT 182
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
++ + + I +N H P L R++ + GD
Sbjct: 183 EEQKEQSQLTQEEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGD 240
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++LDPF GSGT+ AK L+R+FIG E+ ++Y + +++
Sbjct: 241 VVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|16273302|ref|NP_439546.1| modification methylase [Haemophilus influenzae Rd KW20]
gi|1574226|gb|AAC23039.1| modification methylase (hindIIIM) [Haemophilus influenzae Rd KW20]
Length = 309
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 108/291 (37%), Gaps = 48/291 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSFE- 79
I +SI ++KL + S+ I +D PY + + L+ +S + + + K S F+
Sbjct: 5 IYNSDSIXEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLFKR 64
Query: 80 -----------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
Y + +W RVLK +++V R+ +N
Sbjct: 65 RGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSVFVFAGRQFAHRVVVAFENSG 124
Query: 123 FWILNDIVWR----------------------KSNPMPNFRGRRFQNAHETLIWASPSPK 160
F + + W +N +R + E ++W K
Sbjct: 125 FTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQKPYK 184
Query: 161 AKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERLRNK---DGEKLHPTQKPEALLS 214
+ + A NE+ + + S L+ + + + H QKP L+
Sbjct: 185 TGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLNLMK 244
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++ TK I+LDPF GSGT+ AK+L R FIG E +IA R+
Sbjct: 245 LLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRL 295
>gi|315612387|ref|ZP_07887300.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
49296]
gi|315315368|gb|EFU63407.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
49296]
Length = 224
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 93/250 (37%), Gaps = 32/250 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K + G+ + ++++ P DL DPPY + + V+ + + +
Sbjct: 3 KFLNGDCMDIMKQYPDDYFDLAIVDPPYFSGPEKRKFYGRKISPIGVSRLYGE---TSEW 59
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + RV K I+ + + + + +
Sbjct: 60 QIPNKDYFDELFRVSKN----------QIIWGVNYFDYSFGPGRI----------VWDKV 99
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + + S + + + + N +Q +S I G+ + +
Sbjct: 100 NGQSSFSDCEIAYCSLHDSTRLFRYMW------NGMMQGKSISEGHIQQGN---KALNEV 150
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
++HPTQKP L +L + K GD ILD GS +S ++L ++G E+ D +IA
Sbjct: 151 RIHPTQKPANLYLWLLRNYAKEGDKILDTHVGSASSLIACQELGFEYVGCELDGDIFNIA 210
Query: 262 TKRIASVQPL 271
+R+ + +
Sbjct: 211 KQRLDAYEKQ 220
>gi|308183476|ref|YP_003927603.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
PeCan4]
gi|308065661|gb|ADO07553.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
PeCan4]
Length = 287
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/270 (23%), Positives = 100/270 (37%), Gaps = 39/270 (14%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA--VTDSWDKFSSFEAYDAFTRAWL 89
+ ++ SVDLI PPY + A V D W +E Y
Sbjct: 14 MNEVLDNSVDLIITSPPYFNIKDYTKNGTQDLQHSAQHVEDLW-ALEKYEDYLLGLLKVW 72
Query: 90 LACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND----------- 128
L C R LKPNG L + + + H I + ++ IL+D
Sbjct: 73 LECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKM 132
Query: 129 -----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+W+++NP P R QN E + K K T
Sbjct: 133 FLLDVYIWKRANPTKGLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTKEQKEQSQLT 192
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
++ + + I +N H P L R++ + GD++LDPF G G
Sbjct: 193 QEEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGIG 250
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T+ AK L+R+FIG E+ ++Y + +++
Sbjct: 251 TTLREAKFLKRNFIGYELYENYKPLIEQKL 280
>gi|6729995|pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
Length = 323
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/293 (20%), Positives = 103/293 (35%), Gaps = 67/293 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+S+ +LE P +S+ L+ PP+ LQ + + Y
Sbjct: 18 YIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQ----------------HEYVD 61
Query: 84 FTRAWLLACRRVLKPNGTLWVIG-----------SYHNIFRIGTMLQNLNFWILNDIVWR 132
+ ++ + LKP+G+ V S +N + M+ + F++ D W
Sbjct: 62 WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAEDFYWF 121
Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDV 178
+ +P N R R ++A T+ W S + K Y+ L +
Sbjct: 122 NPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIEDPDKF 181
Query: 179 QMRSDWLIPICSGSERLRNKDGE--------------------------KLHPTQKPEAL 212
G ++ G K HP + P L
Sbjct: 182 YTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKL 241
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ T+P D+++D F GS T+G VA++ R +I EMK +Y+ + R
Sbjct: 242 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 294
>gi|289764488|ref|ZP_06523866.1| DNA methylase N-4/N-6 [Fusobacterium sp. D11]
gi|289716043|gb|EFD80055.1| DNA methylase N-4/N-6 [Fusobacterium sp. D11]
Length = 395
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/277 (19%), Positives = 96/277 (34%), Gaps = 64/277 (23%)
Query: 40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
V I+ DPPYN + Y + + + F + L +++L +
Sbjct: 8 VKCIYIDPPYNTGSDSFNYNDNF--------------NHSTWLTFMKNRLELAKKLLTDD 53
Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN---AHETLIWAS 156
G++++ Y+ + ++ ++ + N H+T+++ S
Sbjct: 54 GSIFINLDYNEVHYCKVLMDDIFGRENFQREIIWRIGWVSGYKTSVNNYIRNHDTILFYS 113
Query: 157 P----------------------------------------------SPKAKGYTFNYDA 170
+ K + + +
Sbjct: 114 KNKEFYFNKQYILNSEFKNLVKKDKVKSEFEKLNIDDDLQDKLLNIINYKTRPERYPLED 173
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ ANE + S ++ SG + E QK E L+ RI+ +ST GD ILD
Sbjct: 174 VWNANEYDDLNSIAIVSY-SGESVSKMLKIENDIKGQKSEKLIERIIKNSTMEGDTILDF 232
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSGT+ AVA K+ R +IGIE DI +R+
Sbjct: 233 HLGSGTTAAVAHKMGRRYIGIEQMDYIEDIVVERLKK 269
>gi|218960497|ref|YP_001740272.1| Modification methylase (fragment) [Candidatus Cloacamonas
acidaminovorans]
gi|167729154|emb|CAO80065.1| Modification methylase (fragment) [Candidatus Cloacamonas
acidaminovorans]
Length = 114
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/88 (48%), Positives = 63/88 (71%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+PI G ER++ ++G LHPTQKPE L+ IL++S+ D+ILDPFFG+GT+
Sbjct: 18 RDFIDFIEMPIVQGKERIKGENGRALHPTQKPEKLIELILLASSDENDLILDPFFGTGTT 77
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRI 265
G+VA +L+R++IGIE+ +DY +IA RI
Sbjct: 78 GSVASRLKRNWIGIEINEDYCNIAHNRI 105
>gi|57505368|ref|ZP_00371297.1| m4C-methyltransferase, putative [Campylobacter upsaliensis RM3195]
gi|57016504|gb|EAL53289.1| m4C-methyltransferase, putative [Campylobacter upsaliensis RM3195]
Length = 387
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 87/255 (34%), Gaps = 35/255 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ S L K+ ++ IF PPY Y S++AY
Sbjct: 140 LLIGDNRSSLNKIRDNQINFIFTSPPYYNARIYSDYV-----------------SYKAYL 182
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ L C R+L+ + + S I + IL + + +
Sbjct: 183 KAMQETLKQCYRILEDGRFIIINVSPVITKRAGREFESIRYPIHFDFHQILCESGFYFVD 242
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + P + ++L ++ D I + R
Sbjct: 243 EILWIKPEYSVPNRVAGYLQTKMPLSYKPNCISESLMVYRKNSPFLLDKNIKNYDKNLRN 302
Query: 196 RNK-----------DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
++ +K HP PE L R+L + GD++ DPF GSGT G VA+ +
Sbjct: 303 DDELDSTNCWHISPKADKNHPAVFPEELCKRVLKYYSFKGDVVCDPFAGSGTFGRVARSM 362
Query: 245 RRSFIGIEMKQDYID 259
R + E + Y
Sbjct: 363 GRIPLLCEANEKYAQ 377
>gi|169834647|ref|YP_001693301.1| DNA methylase [Clostridium botulinum B1 str. Okra]
gi|169123195|gb|ACA47030.1| DNA methylase [Clostridium botulinum B1 str. Okra]
Length = 254
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 87/263 (33%), Gaps = 38/263 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I GN + +++K+ KS+D++ +D P+ + + WDK FE
Sbjct: 5 NNIYLGNCLEIMKKIDDKSIDMVLSDLPFGM----------------TNNEWDKAIPFE- 47
Query: 81 YDAFTRAWLLACRRVLKPNGTLW-----VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
R+ K N ++ V S + + + + +N
Sbjct: 48 ------PMWQEINRIAKDNASIALMAAGVFTSELVVSNKKYYRYSWIWKPKEKSNFLNAN 101
Query: 136 PMPNFRGRRFQNAHETLIWA---SPSPKAKGYTFNYDALKAANEDVQM-------RSDWL 185
MP + ++ L + AN ++D
Sbjct: 102 RMPLRQHIDIPIFYKNLPVYNPQKTYGHKPVKKYKQHTTAGANYGKTKIGMEGGGQTDRY 161
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
K +++HPTQKP L ++ + T I LD GS
Sbjct: 162 PTTIIDIPYNTIKIKDRIHPTQKPIELYEYLIKTYTNEEGIALDFTAGSCVLAEACINTN 221
Query: 246 RSFIGIEMKQDYIDIATKRIASV 268
R++I IE ++ Y + A +RI
Sbjct: 222 RNYICIEKEKKYCNKAKERIKLH 244
>gi|194097603|ref|YP_002000639.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
gi|240124889|ref|ZP_04737775.1| putative modification methylase [Neisseria gonorrhoeae SK-92-679]
gi|240127401|ref|ZP_04740062.1| putative modification methylase [Neisseria gonorrhoeae SK-93-1035]
gi|193932893|gb|ACF28717.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
Length = 92
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+K N+ QM+ W P + +E+ K HPTQKP LL R ++S++ GD+I DP
Sbjct: 1 MKTQNDGKQMKCVWTFPPPNKTEKTFGK-----HPTQKPLPLLERCILSASNIGDLIFDP 55
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
F GSGT+G A K R F G E+++D+ ++A KR+
Sbjct: 56 FMGSGTTGVAALKHGRRFCGCELEEDFFELAKKRLEK 92
>gi|256846786|ref|ZP_05552241.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
(adenine-specific) [Fusobacterium sp. 3_1_36A2]
gi|256717752|gb|EEU31310.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
(adenine-specific) [Fusobacterium sp. 3_1_36A2]
Length = 589
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/218 (12%), Positives = 67/218 (30%), Gaps = 19/218 (8%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ L + +I+ DPPYN + ++
Sbjct: 48 EESKNWNNTENIYIEGDNLEVLKLLQKSYHGKIKMIYIDPPYNTGKDFVYKDNFKDNIEN 107
Query: 68 VTDSWDK---------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + L R +L +G +++ +
Sbjct: 108 YKKVTGQVSEERTKLTTNTDTDGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDENEGH 167
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + L + + + P + F HE ++ S +
Sbjct: 168 NLRKICDEIFGEENLIEEIIWEKKFSPQNDAKYFSLNHEQVLCYSKNKNMFNRILLPMTE 227
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ + + +D P SG + + ++P P
Sbjct: 228 EQKSRYKNLDNDIRGPWTSGDISVSRVTEKDIYPILTP 265
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
+K+ KP L+ ++L+ ST+ DIILD F GS T+ + R +I +++
Sbjct: 345 KKVFDYPKPVKLVKKMLLISTENNDIILDFFSGSSTTAHSVMQLNAEDGGNRKYIMVQL 403
>gi|45932|emb|CAA32026.1| unnamed protein product [Proteus vulgaris]
Length = 336
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/293 (20%), Positives = 103/293 (35%), Gaps = 67/293 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+S+ +LE P +S+ L+ PP+ LQ + + Y
Sbjct: 31 YIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQ----------------HEYVD 74
Query: 84 FTRAWLLACRRVLKPNGTLWVIG-----------SYHNIFRIGTMLQNLNFWILNDIVWR 132
+ ++ + LKP+G+ V S +N + M+ + F++ D W
Sbjct: 75 WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAEDFYWF 134
Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPKAK--------GYTFNYDALKAANEDV 178
+ +P N R R ++A T+ W S + K Y+ L +
Sbjct: 135 NPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIEDPDKF 194
Query: 179 QMRSDWLIPICSGSERLRNKDGE--------------------------KLHPTQKPEAL 212
G ++ G K HP + P L
Sbjct: 195 YTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKL 254
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ T+P D+++D F GS T+G VA++ R +I EMK +Y+ + R
Sbjct: 255 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRF 307
>gi|167630912|ref|YP_001681411.1| DNA methylase [Heliobacterium modesticaldum Ice1]
gi|167593652|gb|ABZ85400.1| DNA methylase [Heliobacterium modesticaldum Ice1]
Length = 432
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/265 (18%), Positives = 86/265 (32%), Gaps = 38/265 (14%)
Query: 21 DKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S EKL + PPY + + A + W F +
Sbjct: 171 HRLMCGDSTSEEDFEKLMNGGHAQMAVTSPPYGVGKEYE---------KAGIEPW--FET 219
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
L G L+ GS + + ++ L+ +
Sbjct: 220 VRPVIRNLCRRADIVCWNL---GDLYATGSQFIEPTSVYSVNMFLDNGFRPIWIRIWKKQ 276
Query: 137 MPNF-------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
NF + +E + S + +A+ Y +A S +
Sbjct: 277 GQNFGVGPYHLVSNKPVQQYEYISAFSKNGEAEEYNDQEYVWLSAFAG---HSYKFVKRL 333
Query: 190 SGSERLR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ ER + K HP P L R + + G I+L+PF GSGT+
Sbjct: 334 TKEERKKWGYAGIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTII 393
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKR 264
A++ R +E+ Y D+A KR
Sbjct: 394 AAEQTERKCYAMELSPVYCDLAVKR 418
>gi|240124888|ref|ZP_04737774.1| putative modification methylase [Neisseria gonorrhoeae SK-92-679]
Length = 125
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+LEK P D+IFADPPY L +G + +V +WDK A F W
Sbjct: 2 RKILEKHPNGCFDMIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEW 60
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
L C +LKPNGT+WV G++HNI+ IG ++Q + + ILN+I W K NP PN R F ++
Sbjct: 61 LRLCYALLKPNGTIWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHS 120
Query: 149 HETL 152
ET+
Sbjct: 121 TETI 124
>gi|240013324|ref|ZP_04720237.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
DGI18]
gi|240120395|ref|ZP_04733357.1| putative modification methylase DpnIIB [Neisseria gonorrhoeae
PID24-1]
Length = 92
Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+K N+ QM+ W + +E+ K HPTQKP LL R ++S++ GD+I DP
Sbjct: 1 MKTQNDGKQMKCVWTFAPPNKAEKTFGK-----HPTQKPLPLLERCILSASNIGDLIFDP 55
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
F GSGT+G A K R F G E+++D+ ++A KR+
Sbjct: 56 FMGSGTTGVAALKHGRRFCGCELEEDFFELAKKRLEK 92
>gi|260579071|ref|ZP_05846970.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium jeikeium ATCC
43734]
gi|258602822|gb|EEW16100.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium jeikeium ATCC
43734]
Length = 416
Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/251 (20%), Positives = 93/251 (37%), Gaps = 34/251 (13%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ V + KS +L+ DPPYN+ D +T D
Sbjct: 166 RHRLVCGDATNADDVAVLMDGKSANLVLTDPPYNVAFESS---------DGLTIKNDAMK 216
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ Y F A VL G+ +V + + F + +W K +
Sbjct: 217 ADSFY-EFLLAAFTNMAGVLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVKDSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++ HE +++ I + ++ +
Sbjct: 276 VLGRSPYQW--QHEPVLYGWKQGAKH---------------KWFADRKQTTIWNFAKPRK 318
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N D HPT KP LL+ + +ST+ IILD F GSG++ A++ R +E+ +
Sbjct: 319 NSD----HPTSKPLDLLAYPIRNSTQANAIILDTFAGSGSTLMAAEQTDRIAYLMELDEK 374
Query: 257 YIDIATKRIAS 267
Y + +R A
Sbjct: 375 YASVILRRYAE 385
>gi|313813458|gb|EFS51172.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
HL025PA1]
gi|315106866|gb|EFT78842.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
HL030PA1]
Length = 416
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 34/251 (13%)
Query: 20 KDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ + +E L +L+ DPPYN+ D ++ DK
Sbjct: 166 RHRLVCGDATNAGDIELLMDGKKANLVLTDPPYNVAFESS---------DGLSIKNDKM- 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S +A+ F A V + + +V + Q+ F + +W K +
Sbjct: 216 SADAFYEFLLAAFTQMAGVCEKGASAYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L + K Y R
Sbjct: 276 VLGRSPYQWQHE-PVLYGWVKTGKHTWYADRKQTTVW--------------------RFD 314
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP LL+ + +ST+ I+LD F GSG++ + R +E+ +
Sbjct: 315 KPRRNADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELDEK 374
Query: 257 YIDIATKRIAS 267
Y + +R A
Sbjct: 375 YASVILRRYAD 385
>gi|301166968|emb|CBW26547.1| putative methylase [Bacteriovorax marinus SJ]
Length = 260
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 110/258 (42%), Gaps = 29/258 (11%)
Query: 24 IKGN-----SISVLEKLPAKSVDLIFADPPYNL-----QLNGQLYRPDHSLVDAVTDSWD 73
I G+ + + + +++ADPPY L + G L P + ++ ++
Sbjct: 20 INGDSTIGSNYE--SIMQGEKAQMLYADPPYCLLVRRNKKTGALRDPKKAKINH--EAVT 75
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + +AY FTR WL + + +GTL + +Y I I + L +
Sbjct: 76 RYENTKAYKYFTRNWLSEAVKHISEDGTLVIWTNYLGIKPIKDVALELGYEHFYGEFLWG 135
Query: 134 SNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
G +E + S PK + +N D+ ++ +
Sbjct: 136 KLAKETNSGNETNVRLYEVALVFSKIPKKEL----------SNSDLPLQWSIITKYDEEG 185
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
E + + HP KP + L ++ + T+PGD +LDPF GSG++ A +L R GIE
Sbjct: 186 EATKWDN----HPNHKPFSSLEPLIRNFTRPGDRVLDPFTGSGSTPAACIQLGRKISGIE 241
Query: 253 MKQDYIDIATKRIASVQP 270
+++ + DI+ +RIA +
Sbjct: 242 LREHWADISQRRIAELAK 259
>gi|257052261|ref|YP_003130094.1| DNA methylase N-4/N-6 domain protein [Halorhabdus utahensis DSM
12940]
gi|256691024|gb|ACV11361.1| DNA methylase N-4/N-6 domain protein [Halorhabdus utahensis DSM
12940]
Length = 344
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/281 (22%), Positives = 96/281 (34%), Gaps = 28/281 (9%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
E ++ G++ + LPA SVDL+ PPY +++ ++ + D+ D
Sbjct: 1 METDHAVVTGDAREL--SLPADSVDLVVTSPPYPMIEMWDDIFAALDPAIGDALDADDGQ 58
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFW 124
+FEA +RVL G + Y N I + + F
Sbjct: 59 RAFEAMHDVLDVVWEQLQRVLVEGGIAAINVGDATRTLDRFRQYPNAGEITRRMVDYGFD 118
Query: 125 ILNDIVWR---KSNPMPNFRGRRFQNAHETLIWAS--------PSPKAKGYTFNYDALKA 173
L DIVWR S G NA+ TL S G Y++
Sbjct: 119 PLPDIVWRKPANSGAKFMGSGMVPPNAYPTLEHESILLFRNGPRRSFPPGDETRYESAYF 178
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
E Q SD + G + P + R++ + GD +LDPF+G
Sbjct: 179 WEERNQWFSDLWEMTGTPQG---LDAGLRERSGAFPVEIPLRLIRMFSVYGDTVLDPFWG 235
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
+GT+ A R +G E D RI +
Sbjct: 236 TGTTTLAAMLAGRESVGYERDADLRAAFDDRIEGLPERSRE 276
>gi|209550029|ref|YP_002281946.1| DNA methylase N-4/N-6 [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209535785|gb|ACI55720.1| DNA methylase N-4/N-6 domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 379
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 65/353 (18%), Positives = 104/353 (29%), Gaps = 108/353 (30%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY----------------------- 58
+I G+ I V+ +PA S+D + PPY + +
Sbjct: 13 RIHVGDCIEVMRSMPANSIDCVVTSPPYWGLRDYGVAGQIGLERTLGEHLEVMVSVFREI 72
Query: 59 --------------------RPDHSLVDAVTDSWDKFSSFEA---------YDAFTRAWL 89
P+ +A +F YD
Sbjct: 73 RRILKAHGTVWVNYGDCYAATPNGKSAEAYKADGSDDRTFRDKPFSTVGPVYDPKHSKAR 132
Query: 90 LAC----RRVLKPNGTLWVIGSYHNI-------FRIGTMLQNLNFWILNDIVWRKSNPMP 138
R+ +G V G Y R+ LQ+ +W+ ++I+W K+NP P
Sbjct: 133 GLFVSGDRQSHVESGGRVVAGGYMKPKDVCMIPNRLAIALQDDGWWVRSEIIWNKTNPKP 192
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----------------------E 176
R HE + + S + + N E
Sbjct: 193 ESIDDRPAAVHEKIWLLTKSERYFFDADSLKEPTTGNAHARRKDGQYKAAKGSTAGQNRE 252
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKP------------ 223
+ + + N +G + H P L R +++ T
Sbjct: 253 GTWVETYVPDLRNGRNVWTFNIEGYRGAHFATFPRELARRCILAGTPKTVCGCCGAAEGC 312
Query: 224 ----------GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
I+LDPF GSGT VA++ IE+K +Y DIA +RIA
Sbjct: 313 GPICDTFERLPGIVLDPFGGSGTVAVVAEQYSYRSALIELKPEYADIAERRIA 365
>gi|218441210|ref|YP_002379539.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
gi|218173938|gb|ACK72671.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
Length = 874
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 65/329 (19%), Positives = 109/329 (33%), Gaps = 71/329 (21%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPY---------NLQLN-------------GQLYRPD 61
G+S+ VL ++P +S+DLI PP+ N+ + ++ + +
Sbjct: 17 YLGDSLKVLSQIPDESIDLICTSPPFALVRKKEYGNVDADEYVQWFDSFAQQFYRILKQN 76
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFT---------------------------------RAW 88
SLV + SW K + F W
Sbjct: 77 GSLVIDIGGSWIKGYPVRSLYHFELVMHLCKPRREGGLGFYLAQELYWYNPAKLPTPAEW 136
Query: 89 LLACRRVLKP--NGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDIVWRKSN 135
+ R +K N W+ H + +L+N L S
Sbjct: 137 VTVRRERVKDAVNTIWWLSKDPHPKACNKRVLRPYSKAMENLLKNGYDAKLRPSGHDIST 196
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--- 192
RG S + N+ Q + + +
Sbjct: 197 KFQRNRGGAIPPNIIDAQTTSVATAIGSPVLASFDWLLFNDLAQPVNVISASNTASNDYY 256
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+R ++G K HP + P+AL I+ T+PGD++LDPF GS +G VA+ L+R ++ IE
Sbjct: 257 QRRCKEEGIKPHPARFPQALPEFIINLCTEPGDLVLDPFCGSNVTGRVAEDLKRYWLAIE 316
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTG 281
+ Q Y+ + R + I L
Sbjct: 317 IDQGYLKASQYRFETEASSLVIPLETPQN 345
>gi|292654957|ref|YP_003534854.1| CTAG modification methylase [Haloferax volcanii DS2]
gi|291370416|gb|ADE02643.1| CTAG modification methylase [Haloferax volcanii DS2]
Length = 364
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/276 (24%), Positives = 101/276 (36%), Gaps = 29/276 (10%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
G++ L +SV+L+ PPY +++ L+ VDA D+ D ++FEA
Sbjct: 10 GDAADT--GLADESVNLVVTSPPYPMIEMWDDLFSARDDAVDAALDAGDGDAAFEAMHEQ 67
Query: 85 TRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLNFWILNDIVWR 132
A RVL P G V Y N R+ T L L D VWR
Sbjct: 68 LDAVWDEVARVLAPGGVACVNVGDATRSLDGSFRQYPNHARVLTALGERGLTPLPDAVWR 127
Query: 133 KSNPMPNF---RGRRFQNAHETLIWAS--------PSPKAKGYTFNYDALKAANEDVQMR 181
K G NA+ TL P G Y++ E +
Sbjct: 128 KPTNRLTKFMGSGTLPTNAYVTLEHEYVLVVRKGDPRSFPPGDDRRYESAFFWEERNRWF 187
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
SD L +RL G + P L R++ + GD + DPF G+GT+ A
Sbjct: 188 SD-LWEFSGTDQRL--DSGARERSAAFPVELPLRLIRMYSVYGDTVFDPFVGTGTTTLAA 244
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
R +G ++ D + +R+ + + E+
Sbjct: 245 MLAGRDSVGYDLDADLVLGFERRLDDLPERSHAEVE 280
>gi|289669890|ref|ZP_06490965.1| methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 543
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 11/195 (5%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W + II+G++ L L ++ I+ DPPYN +Y D D +F
Sbjct: 61 WDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVY------NDRFVDKTHRF 114
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ F L + +L +G ++V + +FR+G ++ V +
Sbjct: 115 R-HSLWLEFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGEDNFIANVIWQK 173
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
P + F + HE ++ + + + + +D P
Sbjct: 174 VYSPKNTAQHFSDDHEYIVVYTKNRNIWRPMPLPRSAEQDRAYKNRDNDPRGPWKPSDLS 233
Query: 195 LRNKDGEKLHPTQKP 209
RN G + P
Sbjct: 234 ARNFYGAGTYSITCP 248
>gi|24214246|ref|NP_711727.1| DNA methyltransferase [Leptospira interrogans serovar Lai str.
56601]
gi|24195157|gb|AAN48745.1| DNA methyltransferase [Leptospira interrogans serovar Lai str.
56601]
Length = 364
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/329 (17%), Positives = 103/329 (31%), Gaps = 35/329 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I +S L ++SVDL+ PPY + S D
Sbjct: 1 MKRTIHRIHFRDSRETFP-LDSESVDLVLTSPPYPMIEMWDELFFGFSREIQKNFLIDPN 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S+E RVLK G L + IG G + + IL
Sbjct: 60 LSYEQMHFELDKVWKESFRVLKNGGFLVINIGDATRNTAFGFRIYMNHARILQGCNSIGF 119
Query: 135 NPMPNFRGRRFQNA-------------------HETLIWASPSPKAKGYTFNYDALKAAN 175
+P ++ N+ HE ++ + + K T + + +
Sbjct: 120 QSLPGILWKKQTNSPTKFMGSGTLPAGAYVTLEHEHILIFRKNNRRKFSTKSERLSRMES 179
Query: 176 EDVQMRSDWLIPICSG----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
++ + L + + P L +RI++ + GDI+LDPF
Sbjct: 180 AFFWEERNFWFTDVWDFKGKKQGLSSLLAGRERSAAYPLELANRIILMYSLKGDIVLDPF 239
Query: 232 FGSGTSGAVAKKLRRSFIGIEM----------KQDYIDIATKRIASVQPLGNIELTVLTG 281
G+GT+ A R+ IG ++ I RI + +
Sbjct: 240 LGTGTTTLAAIGNCRNSIGFDLEPGLLKVQLENLHSIKDKLNRIIEKRKNDHDVFVQNRQ 299
Query: 282 KRTEPRVAFNLLVERGLIQPGQILTNAQG 310
+ + FN ++ ++ + N +
Sbjct: 300 NEGKSFLHFNQNLQTPVVTKQEKFLNLER 328
>gi|109946808|ref|YP_664036.1| modification methylase mjai [Helicobacter acinonychis str. Sheeba]
gi|109714029|emb|CAJ99037.1| modification methylase mjai [Helicobacter acinonychis str. Sheeba]
Length = 290
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/270 (22%), Positives = 97/270 (35%), Gaps = 36/270 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLY-RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
+ ++ SVDLI PPY + D + +E Y
Sbjct: 14 MNEVLDNSVDLIITSPPYFNIKDYTKNGTQDLQHSTQHVEDLGALEKYEDYLLGLLKVWH 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C RVLKPNG L + + + H I + ++ IL D
Sbjct: 74 ECYRVLKPNGKLCINVPLIPMLKKVLNTHYNRHIFDLHADIQHSILRDLNNMLENKPKIF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W+++NP P R QN E + K K T K ++
Sbjct: 134 LLDVYIWKRTNPTKKLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTKEQREQKEQSQ 193
Query: 177 DVQMRSDWLIPI-CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
Q +N H P L R++ + GD++LDPF GSG
Sbjct: 194 LTQEEWVEFTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYSCVGDVVLDPFSGSG 253
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T+ AK L+R+FIG E+ ++Y + +++
Sbjct: 254 TTLREAKLLKRNFIGYELYENYKPLIEQKL 283
>gi|298294253|ref|YP_003696192.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
gi|296930764|gb|ADH91573.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
Length = 480
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 23/254 (9%)
Query: 20 KDKIIKGNSIS--VLEKLP-AKSVDLIFADPPYNLQLNGQLYRPDHSL--VDAVTDSWDK 74
+ II G+S +L + ++ +D PYN+ +NG + V V +
Sbjct: 198 EHSIICGDSTDSGTFGELMGDERATVVSSDGPYNVAINGHVSSTGRHREFVAGVGE---- 253
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+A+ AF ++L C P ++ + ++ + + + + N VW K
Sbjct: 254 -MDADAFTAFNASYLNNCLAYSVPGVLIYAFMDWRHMEEVLSAGRLAKLDLQNLCVWNKG 312
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ G +++ HE + + R+ + G+
Sbjct: 313 SGGM---GSFYRSQHELVFVFKEPSASHV--------NNVKLGKFGRNRTNVWNYPGASS 361
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
LR + LHPT KP AL++ I+ ++ GD++LDPF GSGT+ A R IE+
Sbjct: 362 LRKELE--LHPTPKPVALVADIIRDASNRGDVVLDPFSGSGTTIIAAASTGRRARVIELD 419
Query: 255 QDYIDIATKRIASV 268
Y+D+A +R
Sbjct: 420 PHYVDVAVRRWEEW 433
>gi|313143630|ref|ZP_07805823.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
gi|313128661|gb|EFR46278.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
Length = 822
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 74/359 (20%), Positives = 113/359 (31%), Gaps = 77/359 (21%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
S++ I + I + ++IK ++ L L VDLI+ DPPYN +G
Sbjct: 289 FSKEIKYKILSVFDDIESILNGELIKADNFQALNSLMPKYQGKVDLIYIDPPYNTGNDGF 348
Query: 57 LYRPDHSLVD-----------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
+Y + A D S F + D +A L + G
Sbjct: 349 IYSDKFNHSSWLSMIANRLELAREFLKDSGSIFISIDDNEQARLKILCDEIFGEGNFMAN 408
Query: 106 GSYHNIFRIGTMLQNLNFWI--------------------LNDIVWRKSNPMPNFRGRRF 145
+ +F + ++ + + R NP + RG
Sbjct: 409 IIWEKVFSAVNLRKDFSPNHDFISVYSKNIDKTLLNPLPRTEEANARYKNPDNDPRGIWT 468
Query: 146 QNAHE------------TLIWASPSPKAKGYTFN----------YDALKAANEDVQMRSD 183
TL KGY++ D N +
Sbjct: 469 SGDMSVGPAVEANIYEITLPSGRKILPPKGYSWRLSKETFEEYLKDNRIYFNGGDSVPRI 528
Query: 184 WLI-----------PICSGSERLRNKDG---------EKLHPTQKPEALLSRILVSSTKP 223
I E N+D +KL T KPE LL RI ++
Sbjct: 529 KRFLSEVKDGITPLTIWKHKEVGHNQDAAKEILALFDDKLFDTPKPEKLLKRICEIASNQ 588
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
IILD F GSGTS A A+KL R ++GIEM + + + R+ V ++
Sbjct: 589 DSIILDFFAGSGTSLATAQKLGRKWLGIEMGEHFYKVIIPRLKKVIAGFQSGISKECNY 647
>gi|295086226|emb|CBK67749.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
Length = 282
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 89/247 (36%), Gaps = 24/247 (9%)
Query: 32 LEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
+ +L S+D+I PPY +++ ++ + + ++FE
Sbjct: 13 MSQLSDNSIDMIVTSPPYPMIEMWDDIFAAQNPDIRTAFKQNKPRTAFELMHKELDKVWS 72
Query: 91 ACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
C RVLK + + Y+N RI + L F L +I+W+K+ P
Sbjct: 73 ECWRVLKDGSFMCINIGDATRTINSEFALYNNNTRIILACEKLGFINLPNILWKKTTNAP 132
Query: 139 N--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
N G HE ++ K T + ++ +
Sbjct: 133 NKFMGSGMLPCGAYVTLEHEWILIFRKGGKRVYKTTEDKDARRSSSFFWEERNIWFSDIW 192
Query: 191 GSERLR---NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ ++ +K + P L R++ ++ GD +LDPF G GT+ + R+
Sbjct: 193 DIKGVKQTIDKAPSRERNASYPIELPYRLINMYSQKGDTVLDPFMGLGTTVIASILSERN 252
Query: 248 FIGIEMK 254
IG E+
Sbjct: 253 SIGYEID 259
>gi|237751381|ref|ZP_04581861.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229372747|gb|EEO23138.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 376
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 88/257 (34%), Gaps = 39/257 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ + LIF PPY Y S++AY
Sbjct: 129 LLIGDNRLSLNKIKDNQISLIFTSPPYYNARIYSDYV-----------------SYKAYL 171
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ L C R+L+ + + S I + IL + + +
Sbjct: 172 KAMQETLKQCYRILEDGRFIIINVSPVITKRAGREFESIRYPIHFDFHQILCESGFYFID 231
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + P + ++L ++ D I + L
Sbjct: 232 EILWIKPEYSVPNRVAGYLQTKMPLSYKPNCISESLMVYRKNSPFLLDKNIKNY--DKSL 289
Query: 196 RNKDG-------------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+N D +K HP PE L R+L + GD++ DPF GSGT G VA+
Sbjct: 290 KNDDELDSTNCWYISPKADKNHPAVFPEELCKRVLKYYSFKGDVVCDPFAGSGTFGRVAR 349
Query: 243 KLRRSFIGIEMKQDYID 259
+ R + E + Y +
Sbjct: 350 SMGRIPLLCEANESYAE 366
>gi|170695981|ref|ZP_02887120.1| ParB domain protein nuclease [Burkholderia graminis C4D1M]
gi|170139165|gb|EDT07354.1| ParB domain protein nuclease [Burkholderia graminis C4D1M]
Length = 473
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 32/250 (12%)
Query: 21 DKIIKGNSIS------VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+++ G+S L + L+ DPPY + + +R +V+
Sbjct: 165 HRLVCGDSTDGEVAKAALAGIRPS---LMITDPPYGVDYDAD-WRNRVVMVEGERRGTHG 220
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S TRA + P +V + + L+ NF I + I+W K
Sbjct: 221 TRSTGKVLNDTRADWREAWQHF-PGDVAYVWHAGVFADVVAGSLRACNFGIRSQIIWAKH 279
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + HE +A K G+T D E
Sbjct: 280 TLV--VSRGHYHWQHEPCWYAVREGKTAGWT----------------GDRSQSTLWQIEH 321
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
R++ G H TQKP + R + + T PG + +PF GSGT+ A+ + R IE+
Sbjct: 322 RRSESG---HSTQKPVEAMRRPIENHTSPGQAVYEPFSGSGTTIVAAESVGRVCHAIELN 378
Query: 255 QDYIDIATKR 264
Y D+A R
Sbjct: 379 PAYCDVAVLR 388
>gi|147676486|ref|YP_001210701.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
SI]
gi|146272583|dbj|BAF58332.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
SI]
Length = 620
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 69/219 (31%), Gaps = 22/219 (10%)
Query: 13 QNSIFEWKDK---IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------- 55
+ +W++ I+G+++ L+ L + I+ DPPYN +
Sbjct: 88 KEESVDWENTGNIYIEGDNLEALKILQESYLNKIKCIYIDPPYNTGKDFIYKDNFKQSRI 147
Query: 56 ----QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ + D ++ + + L R +L+ +G +++ + +
Sbjct: 148 EYLAESGQVDGDGNRLFQNTESNGRFHSDWLSMMYPRLKLARNLLREDGVIFISIDDNEV 207
Query: 112 FRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + + P R F H+ +I S +
Sbjct: 208 HNLRKICDEVFGERNFVATIIWQRAFSPVNLKRTFSENHDFIICYSKNKDIIEIKGLKRT 267
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+A + +D P S + EK++P P
Sbjct: 268 DEAESRYSNPDNDPRGPWTSTDLSVGPVVAEKVYPITTP 306
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRR 246
E + D + KP LL R+L +T+ DIILD F GS T+ + R
Sbjct: 378 ELKKIFDEKTYIDYPKPVRLLKRLLELTTENNDIILDFFSGSATTAHAVMQLNAEDEGNR 437
Query: 247 SFIGIEM 253
+I +++
Sbjct: 438 KYIMVQL 444
>gi|315638959|ref|ZP_07894130.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
JV21]
gi|315480988|gb|EFU71621.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
JV21]
Length = 368
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 57/328 (17%), Positives = 109/328 (33%), Gaps = 74/328 (22%)
Query: 17 FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
F + +I ++++ + L S+DLI+ DPP+ +L + D+
Sbjct: 27 FNADNLLIYDDNLNAMRFLAQELDYQNSIDLIYIDPPFGTNNIFKLGSTMSAEKDSKIAY 86
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
DKF S E+Y F L+ R+++ G+L++ + + + +
Sbjct: 87 KDKF-SLESYLEFLYCRLVWIRKLMSEKGSLYLHIDSKMGHYVKILCDEVFGRENFINDI 145
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY-------------------------- 164
R NF+ + + N + +++ + S +
Sbjct: 146 TRIKCNPKNFKRKAYGNIKDMILFYAKSSQYIWNEIKDEVLESDLKKRFNKKDDKGYYTT 205
Query: 165 --------TFNYDALKAANEDVQMRSDWLIPICSGSERL---------RNKDGEK----- 202
T N ++ + N +RL RN + K
Sbjct: 206 IPLHAPGITQNGESGQEWNGIKPPNGRHWRCSLKELDRLQELGLIEWSRNNNPRKKVYRD 265
Query: 203 -------------------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+PT+K A+L RI+ S+ ++D F G G A
Sbjct: 266 KCKGKKIQDIWEFKDSQNPAYPTEKNRAMLRRIIAMSSNEDSRVMDCFCGGGGFLQEALN 325
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L R FIGI+ + I + K + + +
Sbjct: 326 LGRKFIGIDEGIEAIKLNQKWLKASENH 353
>gi|224538181|ref|ZP_03678720.1| hypothetical protein BACCELL_03072 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520203|gb|EEF89308.1| hypothetical protein BACCELL_03072 [Bacteroides cellulosilyticus
DSM 14838]
Length = 327
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 102/294 (34%), Gaps = 67/294 (22%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+S++++ +L SV L+ PP+ L + D + Y
Sbjct: 14 VYCGDSLNLITQLEDDSVSLVITSPPFALLRKKEYGNKDQ----------------DEYI 57
Query: 83 AFTRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNFWILNDIVW 131
+ + A LK +G+L + I S +N + + L + + + W
Sbjct: 58 EWLAEFAKALLPKLKEDGSLVIDLGGAYEKGKPIRSLYNFKVLIHFCEVLGYHLAEEFYW 117
Query: 132 RKSNPMP------NFRGRRFQNAHETLIWASPSP----------------------KAKG 163
+ +P N R R +++ T+ W S S +
Sbjct: 118 YNPSKLPSPIEWVNKRKMRAKDSVNTVWWFSKSDFPKSDVTKVLTPYSDRMKKLLDNPEK 177
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE------------KLHPTQKPEA 211
Y + N SD I S ++ N + K HP + P
Sbjct: 178 YYQAKERPSGHNISTSFGSDNGGAIPSNLLQISNSESNSKYLTYCKKLNIKSHPARFPTK 237
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
L + T D+++D F GS T+G V L R ++G E+ ++Y+ + R
Sbjct: 238 LPEFFVNMLTDENDLVVDIFAGSCTTGEVCDNLHRRWLGFELDRNYVANSIFRF 291
>gi|332283499|ref|YP_004415410.1| DNA methylase [Pusillimonas sp. T7-7]
gi|330427452|gb|AEC18786.1| DNA methylase [Pusillimonas sp. T7-7]
Length = 187
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/224 (22%), Positives = 82/224 (36%), Gaps = 41/224 (18%)
Query: 45 ADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
DPPY + D + + + + RVL+P+
Sbjct: 2 TDPPY---------------LVNYRDRTGRSIANDKQADWLGPAFKHAYRVLRPDSFCVS 46
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
++ + + F ++ +V+ KS + Q HE+ + A
Sbjct: 47 FYGWNRVDYFFKAWKEAGFRVVGHLVFAKSY---QSSAKYVQYRHESAYLLAKGKPALPV 103
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
D L G KLHPTQKP L+ ++ + +KPG
Sbjct: 104 NPLPDLLPW-----------------------KYTGNKLHPTQKPVESLAPLVEAFSKPG 140
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
I+LDPF GSG++ AK+ R +IGIE+ Y + +R+A
Sbjct: 141 AIVLDPFAGSGSTCVAAKQAGRRYIGIELDAQYHAVGLQRLAVQ 184
>gi|260580772|ref|ZP_05848598.1| DNA methylase [Haemophilus influenzae RdAW]
gi|1171051|sp|P43871|MTH3_HAEIN RecName: Full=Modification methylase HindIII; Short=M.HindIII;
AltName: Full=Adenine-specific methyltransferase HindIII
gi|290943|gb|AAA61959.1| HindIII modification methyltransferase [Haemophilus influenzae]
gi|260092589|gb|EEW76526.1| DNA methylase [Haemophilus influenzae RdAW]
gi|301170147|emb|CBW29751.1| modification methylase hindiii (ec 2.1.1.72) (adenine-specific
methyltransferase hindiii) (m.hindiii) [Haemophilus
influenzae 10810]
Length = 309
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 108/291 (37%), Gaps = 48/291 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSFE- 79
I +SI ++KL + S+ I +D PY + + L+ +S + + + K S F+
Sbjct: 5 IYNSDSIFEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLFKR 64
Query: 80 -----------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
Y + +W RVLK +++V R+ +N
Sbjct: 65 RGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSVFVFAGRQFAHRVVVAFENSG 124
Query: 123 FWILNDIVWR----------------------KSNPMPNFRGRRFQNAHETLIWASPSPK 160
F + + W +N +R + E ++W K
Sbjct: 125 FTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQKPYK 184
Query: 161 AKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERLRNK---DGEKLHPTQKPEALLS 214
+ + A NE+ + + S L+ + + + H QKP L+
Sbjct: 185 TGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLNLMK 244
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++ TK I+LDPF GSGT+ AK+L R FIG E +IA R+
Sbjct: 245 LLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRL 295
>gi|148658370|ref|YP_001278575.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
RS-1]
gi|148570480|gb|ABQ92625.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
Length = 314
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/285 (16%), Positives = 94/285 (32%), Gaps = 34/285 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + + ++P +S+ I DPPY ++ S + W SF+ +
Sbjct: 23 LVIHADCFEWMSRIPTESIHAIVTDPPYGVKEYDSEQLEKRS--NGHGGIWRIPPSFDGH 80
Query: 82 D-------------------AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ W ++L+P L++ + + +
Sbjct: 81 VRSPLPRFTALNSKERERIEQYFYEWAKLAMQILRPGAHLFLASNVFLSQIVFASIVRAG 140
Query: 123 FWILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
++ R + +E
Sbjct: 141 LEFRGQVIRLVRTLRGGDRPKNAEDEFPGVCSMPRGCYEPWGIFRKPVPKGMTIGECLRT 200
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPG-DIILD 229
+ SER K+ HP+ KP++ L +I+ +S G I+LD
Sbjct: 201 FQTGGLRRKPDGNPFEDVIESERTPQKERYIADHPSLKPQSFLRQIVYASLPLGEGIVLD 260
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
PF GSG++ A A+ + S +G+E ++Y ++ + I ++ L +
Sbjct: 261 PFMGSGSTVAAAEAVGYSALGVEQYREYFLMSLQSIPALSSLDSE 305
>gi|228941076|ref|ZP_04103633.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228974008|ref|ZP_04134582.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980596|ref|ZP_04140905.1| DNA methylase N-4/N-6 [Bacillus thuringiensis Bt407]
gi|228779157|gb|EEM27415.1| DNA methylase N-4/N-6 [Bacillus thuringiensis Bt407]
gi|228785734|gb|EEM33739.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818619|gb|EEM64687.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar berliner ATCC
10792]
Length = 301
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/304 (21%), Positives = 102/304 (33%), Gaps = 89/304 (29%)
Query: 44 FADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
PPY + V ++ E Y + + +RVLK +GTLW
Sbjct: 2 VTSPPYWGLRDY-----------GVDGQIGLEATVEEYVSNLVSVFREVKRVLKDDGTLW 50
Query: 104 VIGSY--------HN---------------------------------------IFRIGT 116
+ N +R+
Sbjct: 51 LNLGDVYAGSGRGRNADGKGNPGNNHFQSVGQVTGIVSITKSVDGLKPKDLIGLPWRVAF 110
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
LQ +++ DIVW K N MP R +HE + S SPK + +
Sbjct: 111 ALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSPKYYYDHESIKEPAVYGQ 170
Query: 177 DVQMRSDWLIPICSGSERLRNKDG-------------------------------EKLHP 205
S+ ++R + G ++ H
Sbjct: 171 QDVRGSEGAFGPPQRAKRTSKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVATKPLKEAHF 230
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
PEAL+ +++ I++DPFFGSGT G VA K R+FIGIE+ YI+I+ + +
Sbjct: 231 ATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGYIEISDRLL 290
Query: 266 ASVQ 269
++VQ
Sbjct: 291 SNVQ 294
>gi|254441682|ref|ZP_05055175.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
gi|198251760|gb|EDY76075.1| ParB-like nuclease domain family [Octadecabacter antarcticus 307]
Length = 420
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/273 (20%), Positives = 97/273 (35%), Gaps = 40/273 (14%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVD--LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++I G+S V+ +L V L+ DPPY ++ + + V A
Sbjct: 175 HQLICGDSTSADVVGRLLGD-VKPQLMVTDPPYGVKYD----PSWRNQVGAAKTKRTGKV 229
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + AW L P +V S + + L F + + I+W K
Sbjct: 230 LNDDRADWREAW------ALFPGDVAYVWHSALHAATVAESLMATGFNVRSQIIWAKDRL 283
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + RG + K +
Sbjct: 284 VLS-RGDYHWQHEPCWYAVKKTGKGHWAGDRKQTTLWHISG------------------K 324
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++D +H TQKP + R +++++ PG + +PF GSGT+ A+ R GIE+
Sbjct: 325 DQDATTVHGTQKPVECMRRPILNNSSPGQAVYEPFMGSGTTLIAAETTGRVCFGIELNPA 384
Query: 257 YIDIATKR------IASVQPLGNIELTVLTGKR 283
Y+D+A +R +V P T L KR
Sbjct: 385 YVDVAIERWQQFTGANAVLPETGETFTDLKAKR 417
>gi|300933470|ref|ZP_07148726.1| ParB family DNA methylase [Corynebacterium resistens DSM 45100]
Length = 416
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/254 (20%), Positives = 95/254 (37%), Gaps = 40/254 (15%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWD 73
+ +++ G++ V + KS +L+ DPPYN+ +G R D D
Sbjct: 166 RHRLVCGDATNPDDVQTLMGGKSANLVLTDPPYNVAFESSDGLTIRNDAMKAD------- 218
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ F A VL G+ +V + + F + +W K
Sbjct: 219 ------SFYEFLLAAFTNMAGVLDKGGSAYVFHADTEGLNFRKAFIDAGFKLSGCCIWVK 272
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
++ + ++ HE +++ I + ++
Sbjct: 273 NSLVLGRSPYQW--QHEPVLYGWKQGAKH---------------KWFADRKQTTIWNFAK 315
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+N D HPT KP LL+ + +ST+ IILD F GSG++ A++ R +E+
Sbjct: 316 PRKNSD----HPTSKPLDLLAYPIRNSTQANAIILDTFAGSGSTLMAAEETDRIAYCMEL 371
Query: 254 KQDYIDIATKRIAS 267
+ Y + +R A
Sbjct: 372 DEKYASVILRRYAD 385
>gi|71898330|ref|ZP_00680503.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|71731853|gb|EAO33911.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
Length = 200
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 55/213 (25%), Positives = 82/213 (38%), Gaps = 23/213 (10%)
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
+ Y + A D F + A++ WL CRRV +P G L V + + +
Sbjct: 9 KRKYINSTTKHIAPDFDCD-FRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTL 67
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+Q+ + +VW K+ GR A E ++WAS
Sbjct: 68 TDAVQSAGWAWQGIVVWDKTPACRPQLGRFRSQA-EFIVWASCGL--------------- 111
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
M G EK H KP AL+ ++ P +LDPF GS
Sbjct: 112 -----MNPKAHPVTPVGVFATGTAPREKRHQVGKPLALMEHLVKIV-PPTSTVLDPFAGS 165
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+G A + FIG+E+ Y D+A +R+A
Sbjct: 166 GTTGVAALRAGHQFIGMEISPWYCDVAKQRLAD 198
>gi|260913426|ref|ZP_05919905.1| type III restriction-modification system EcoP15I [Pasteurella
dagmatis ATCC 43325]
gi|260632500|gb|EEX50672.1| type III restriction-modification system EcoP15I [Pasteurella
dagmatis ATCC 43325]
Length = 621
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 19/208 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS-------------- 63
+ +IKG+++ VL+ L V +I+ DPPYN +G +Y+ D
Sbjct: 95 NLLIKGDNLEVLKHLKNAYANKVKMIYIDPPYNTGSDGFVYQDDRKFTPEQLAKLANMPI 154
Query: 64 --LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + K +S A+ F L R +LK +G +++ + ++ + +
Sbjct: 155 DEAKRVLDFTAKKSNSHSAWLTFMYPRLYIARELLKEDGVIFISIDDNEQAQLKLLCDEV 214
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ +N HE + + K +
Sbjct: 215 FGEENFVAGFIWNNKYTVSNDTDVSYQHEHIFCYAKDKANFSLNLLERTAKQNKDYKNRD 274
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D + R+ ++ P
Sbjct: 275 NDPKGAWKATPIHARSGTDSGIYTIVFP 302
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 19/148 (12%)
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
+ + + T+ + + + +E L + G+ + K L+
Sbjct: 332 YFNKNGGVDKKTYLSEVRDGITCGTVWSYEDVGHSHGNNEELADLLGKGIFNDPKGIMLI 391
Query: 214 SRILVSST--KPGDIILDPFFGSGTSGAVAKKL-----RRSFIGIEMK------------ 254
++L ST DI+LD F GSGT+ R FI +++
Sbjct: 392 EKLLKLSTSANNKDIVLDFFAGSGTTAHAVFNANKFDGNRKFILVQLDEPPKKEAYKAGY 451
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGK 282
Q DI RI + G
Sbjct: 452 QTIFDITKARIEKSAVKIQQDFPDYQGD 479
>gi|260583020|ref|ZP_05850802.1| DNA methylase [Haemophilus influenzae NT127]
gi|260093871|gb|EEW77777.1| DNA methylase [Haemophilus influenzae NT127]
Length = 310
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 107/291 (36%), Gaps = 48/291 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYRPDHSLVDAVTDSWDKFSSFE- 79
I +SI ++KL + S+ I +D PY + + L+ +S + + + K S F+
Sbjct: 5 IYNSDSIFEIKKLDSNSIHAIISDIPYGIDYDDWDILHSNTNSALGGTSSAQHKTSLFKR 64
Query: 80 -----------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
Y + +W RVLK + +V R+ +N
Sbjct: 65 RGKPLNGWSEADKKRPQEYQEWVESWSNEWFRVLKSGSSAFVFAGRQFAHRVVVAFENSG 124
Query: 123 FWILNDIVWR----------------------KSNPMPNFRGRRFQNAHETLIWASPSPK 160
F + + W +N +R + E ++W K
Sbjct: 125 FTFKDMLSWEKDKAPHRAQRISCVFERRGDIANTNKWVGWRVANLRPLFEPILWFQKPYK 184
Query: 161 AKGYTFNY---DALKAANEDVQMRSDWLIPICSGSERLRNK---DGEKLHPTQKPEALLS 214
+ + A NE+ + + S L+ + + + H QKP L+
Sbjct: 185 TGSTLADNLIKHEVGAWNENSLTHWNIQQGALNHSNILKVRITSEDKGYHVAQKPLNLMK 244
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++ TK I+LDPF GSGT+ AK+L R FIG E +IA R+
Sbjct: 245 LLIDLVTKEEQIVLDPFAGSGTTLLAAKELNRHFIGYEKNNGIYNIAVNRL 295
>gi|294629192|ref|ZP_06707752.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. e14]
gi|292832525|gb|EFF90874.1| DNA (cytosine-5-)-methyltransferase [Streptomyces sp. e14]
Length = 369
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/308 (18%), Positives = 95/308 (30%), Gaps = 82/308 (26%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
G+S+ +L +LPA SVDL PP+ L D E Y A+
Sbjct: 25 GDSLELLGELPANSVDLFMTSPPFPLLRKKAYGNKDQ----------------EEYVAWL 68
Query: 86 RAWLLACRRVLKPNGTLWVIG-----------SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ + LKP G+L + S H + + +L +++ + W
Sbjct: 69 VKFAKLAKDALKPTGSLVIDIGGAYQQGEPVRSLHQFRALLAFVDDLGYFLAEEFYWYNP 128
Query: 135 NPMP------NFRGRRFQNAHETLIWASPS----------------------PKAKGYTF 166
+P N R R ++A T+ W S + Y
Sbjct: 129 AKLPSPIEWVNKRKYRAKDAVNTVWWLSKTERPKADVGKVRVPYSKAMQQLLKDPAAYYR 188
Query: 167 NYDALKAANEDVQMRSDW---------------------------LIPICSGSERLRNKD 199
+ N D R
Sbjct: 189 PKERPSHHNIGKAFGVDNGGALPSNLLEIPYLEDLLEIPNLLELPNSQSNDAYLRTLKAM 248
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HP + P L + + T PGD+++D F GS T+G A+ L R+++ E+ Y
Sbjct: 249 ERPGHPARFPIKLPTFFIKMLTDPGDVVVDFFGGSNTTGRAAEDLGRNWLSFELDPAYAA 308
Query: 260 IATKRIAS 267
++ R
Sbjct: 309 LSAVRFME 316
>gi|224437165|ref|ZP_03658146.1| type III restriction-modification system methylation subunit
[Helicobacter cinaedi CCUG 18818]
Length = 1032
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 74/359 (20%), Positives = 113/359 (31%), Gaps = 77/359 (21%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
S++ I + I + ++IK ++ L L VDLI+ DPPYN +G
Sbjct: 499 FSKEIKYKILSVFDDIESILNGELIKADNFQALNSLMPKYQGKVDLIYIDPPYNTGNDGF 558
Query: 57 LYRPDHSLVD-----------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
+Y + A D S F + D +A L + G
Sbjct: 559 IYSDKFNHSSWLSMIANRLELAREFLKDSGSIFISIDDNEQARLKILCDEIFGEGNFMAN 618
Query: 106 GSYHNIFRIGTMLQNLNFWI--------------------LNDIVWRKSNPMPNFRGRRF 145
+ +F + ++ + + R NP + RG
Sbjct: 619 IIWEKVFSAVNLRKDFSPNHDFISVYSKNIDKTLLNPLPRTEEANARYKNPDNDPRGIWT 678
Query: 146 QNAHE------------TLIWASPSPKAKGYTFN----------YDALKAANEDVQMRSD 183
TL KGY++ D N +
Sbjct: 679 SGDMSVGPAVEANIYEITLPSGRKILPPKGYSWRLSKETFEEYLKDNRIYFNGGDSVPRI 738
Query: 184 WLI-----------PICSGSERLRNKDG---------EKLHPTQKPEALLSRILVSSTKP 223
I E N+D +KL T KPE LL RI ++
Sbjct: 739 KRFLSEVKDGITPLTIWKHKEVGHNQDAAKEILALFDDKLFDTPKPEKLLKRICEIASNQ 798
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
IILD F GSGTS A A+KL R ++GIEM + + + R+ V ++
Sbjct: 799 DSIILDFFAGSGTSLATAQKLGRKWLGIEMGEHFYKVIIPRLKKVIAGFQSGISKECNY 857
>gi|45658071|ref|YP_002157.1| DNA methyltransferase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|45601312|gb|AAS70794.1| DNA methyltransferase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
Length = 364
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/329 (17%), Positives = 103/329 (31%), Gaps = 35/329 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I +S L ++SVDL+ PPY + S D
Sbjct: 1 MKRTIHRIHFRDSRETFP-LDSESVDLVLTSPPYPMIEMWDELFFGFSREIQKNFLIDPN 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S+E RVLK G L + IG G + + IL
Sbjct: 60 LSYEQMHFELDKVWRESFRVLKNGGFLVINIGDATRNTAFGFRIYMNHARILQGCNSIGF 119
Query: 135 NPMPNFRGRRFQNA-------------------HETLIWASPSPKAKGYTFNYDALKAAN 175
+P ++ N+ HE ++ + + K T + + +
Sbjct: 120 QSLPGILWKKQTNSPTKFMGSGTLPAGAYVTLEHEHILIFRKNNRRKFSTKSERLSRMES 179
Query: 176 EDVQMRSDWLIPICSG----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
++ + L + + P L +RI++ + GDI+LDPF
Sbjct: 180 AFFWEERNFWFTDVWDFKGKKQGLSSLLAGRERSAAYPLELANRIILMYSLKGDIVLDPF 239
Query: 232 FGSGTSGAVAKKLRRSFIGIEM----------KQDYIDIATKRIASVQPLGNIELTVLTG 281
G+GT+ A R+ IG ++ I RI + +
Sbjct: 240 LGTGTTTLAAIGNCRNSIGFDLEPGLLKVQLENLHSIKDKLNRIIEKRKNDHDVFVQNRQ 299
Query: 282 KRTEPRVAFNLLVERGLIQPGQILTNAQG 310
+ + FN ++ ++ + N +
Sbjct: 300 NEGKSFLHFNQNLQTPVVTKQEKFLNLER 328
>gi|194336230|ref|YP_002018024.1| Site-specific DNA-methyltransferase (adenine-specific) [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308707|gb|ACF43407.1| Site-specific DNA-methyltransferase (adenine-specific) [Pelodictyon
phaeoclathratiforme BU-1]
Length = 643
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 19/209 (9%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K+ +I+G+++ VL+ L V LI+ DPPYN + + + +
Sbjct: 101 KNLMIEGDNLEVLKLLQKSYSGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLELTGQIE 160
Query: 77 S--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNL 121
+ L R +L+ +G +++ + + + +
Sbjct: 161 GGRKISSNTEASGRFHTDWLNMMYPRLKLARNLLREDGVIFISIDDGELDNLRKLCAEVF 220
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ + P N H+ ++ + + + +
Sbjct: 221 GDENFVVQIIWRKRSTPPNDKIIGAN-HDYILCFAKNAISVKLQHRERSADQIARYKNPD 279
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ P G K G + P
Sbjct: 280 NHAKGPWAPGDLMANIKGGRFVKSLNFPI 308
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 21/149 (14%)
Query: 172 KAANEDVQMRSDWLIPICSG---SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
E V S W + +E + + KP L+ ++ +P ++L
Sbjct: 358 CEVKEGVTYPSIWDFVPLNTSGSNEMGAIFGNPTIFESPKPVGLIQELVALGCEPNGVVL 417
Query: 229 DPFFGSGTSGAVAKKL------RRSFIGIEM-KQDYIDIATKRIASV------QPLGNIE 275
D F GSGT+G R +I +++ +Q Y++ +R++ +P +E
Sbjct: 418 DFFAGSGTTGHALMAQNVIDGGNRRYILVQLPEQLYLENNEQRVSGDYCDQIGKPRTIVE 477
Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
LT +R ++ + + PG
Sbjct: 478 LTKERLRRAARKIK-----DENPLFPGDF 501
>gi|297571107|ref|YP_003696881.1| DNA methylase N-4/N-6 domain protein [Arcanobacterium haemolyticum
DSM 20595]
gi|296931454|gb|ADH92262.1| DNA methylase N-4/N-6 domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 416
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/282 (19%), Positives = 101/282 (35%), Gaps = 36/282 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++ G++ V E L +L+ DPPYN+ S + D D+
Sbjct: 167 RHRLVCGDATSQTDV-EALMDGKRANLVLTDPPYNVAFES------GSGLSIKNDKMDR- 218
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
E + F + V + + +V + Q+ F++ +W K +
Sbjct: 219 ---EKFYNFLLSAFTNMAAVCEKGASAYVFHADTEGLNFRRAFQDAGFYLSGCCIWVKDS 275
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ ++Q+ L + K + Y I + ++
Sbjct: 276 LVLGRSPYQWQHE-PVLYGWVKTGKHRWYADRKQT----------------TIWNFAKPR 318
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
RN D HPT KP LL+ L +ST+ I+LD F GSG++ + R +E+ +
Sbjct: 319 RNAD----HPTSKPLDLLAYPLQNSTQANAIVLDTFAGSGSTLMACETTDRICHAMELDE 374
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
Y + +R A + GK+ + +G
Sbjct: 375 KYASVILRRYAEHTGDAAGITCLRDGKQLAYLDVVKDVERQG 416
>gi|302344011|ref|YP_003808540.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
gi|301640624|gb|ADK85946.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
Length = 472
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/289 (18%), Positives = 94/289 (32%), Gaps = 45/289 (15%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S + K+ + L+F PPY + +
Sbjct: 182 HRLLCGDSTLAEAVTKVMSGQRAALLFTSPPYGNKRDYTTG------------------G 223
Query: 78 FEAYDAFTRAWLLACRR-----VLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVW 131
+D R VL G + +H + ++ + VW
Sbjct: 224 IADWDGLMRGVFANAPMGQGGQVLVNLGLIHEKNEWHPYWEGWLDWMRGQGWRRFAWYVW 283
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ--MRSDWLIPIC 189
+ +P RF +HE + + + + D ++
Sbjct: 284 DQGFGLPGDWNGRFGPSHEFVFHFNRQSRRPHKIMPCIHAGEDRDFKSGLRGKDGVVQKW 343
Query: 190 SGSE----------------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+G R + + E HP P AL +++ T P D+ +PF G
Sbjct: 344 NGKTFQTQESKIPDSVARIFRHQARGIETGHPAVFPVALPEHFMLAFTDPEDVCFEPFSG 403
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
SGTS A+K R IE+ +Y DIA +R A + P +I L
Sbjct: 404 SGTSLVAAQKTGRICQAIELAPEYCDIAIRRFAGLFPQESITLEDGRTF 452
>gi|120608867|ref|YP_968545.1| adenine-specific DNA-methyltransferase [Acidovorax citrulli
AAC00-1]
gi|120587331|gb|ABM30771.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
citrulli AAC00-1]
Length = 668
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 20/219 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLYRPDHS 63
+ +I+G+++ VL+ L V LI+ DPPYN + +L S
Sbjct: 104 NLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQNGIQNYLELTGQTES 163
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
V +++ + L R++LK +G ++V + R+ L L
Sbjct: 164 GVKVSSNTEASGRFHTDWLNMMYPRLKLARQLLKEDGAIFVSIDDIELPRLKIALDELFG 223
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ + + + HE ++ + S + D + +
Sbjct: 224 EDNLIAQFVWRSDGNFDNQAKVKVCHEYIVAYAKSAPNFAHPPVVDPSTPTDSKIFRPQI 283
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
+ +G +N E L P P ++ T+
Sbjct: 284 RNTIVKNGP---KNPPSEILLPAGFPADFDDGVIEGRTE 319
>gi|207725436|ref|YP_002255832.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
gi|206590672|emb|CAQ37634.1| dna modification methylase protein [Ralstonia solanacearum MolK2]
Length = 467
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/293 (17%), Positives = 92/293 (31%), Gaps = 55/293 (18%)
Query: 20 KDKIIKGNSIS--VLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I G++ V+ L A L F PPY Q N
Sbjct: 174 EHRLICGDATDGAVIAALMAGQQATLCFTSPPYANQRNYTSG------------------ 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILND 128
+D R + +G + V + + + +
Sbjct: 216 GIADWDVLMRGAFGNA--PMVGDGQVLVNLGLVHRDSEVVPYWDAWIGWMRTQGWRRFGW 273
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD---ALKAANEDVQMRSDWL 185
VW + MP R + E + + + T + D S
Sbjct: 274 YVWDQGPGMPGDWMGRLGPSFEFVFHFNREARRPNKTVPCKFAGKDEHLRPDGTSTSMRN 333
Query: 186 IPICSGSE--------------------RLRNKDGEKL-HPTQKPEALLSRILVSSTKPG 224
GS R + K G+ + HP P AL ++ + + G
Sbjct: 334 KAGVRGSWTHEGQVTQDTRIPDSVIRVMRHKGKIGKGIDHPAVFPVALPEFVIGAYSDAG 393
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
D++ +PF GSGT+ A++ R +E+ +Y+D+A +R P + L
Sbjct: 394 DVVFEPFGGSGTTMLAAQRTGRLCRSVEIAPEYVDVAIQRFQQNYPEVPVTLQ 446
>gi|218295065|ref|ZP_03495901.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
gi|218244268|gb|EED10793.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
Length = 237
Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 34/245 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G ++ VL L +V+ + DPPY G RP+ + + E +
Sbjct: 12 RLHHGEALEVLASLKTGAVEAVLTDPPYGT---GHWRRPESGQGADPRAVYGR----EPW 64
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D+++ AWL RV + ++ R+ L L + P P R
Sbjct: 65 DSWSLAWLPEALRVARGPVLFFLPQD-----RLEEALAFARERGLPFRLLIWGKPDPRPR 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ A E ++ + + S R
Sbjct: 120 PQGPAYAFEPVLAL----------------------RSLPGRGKDLFLATSPRPGRDGEA 157
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP QKP ++++ ++ +++PGD +LDPF GSG++G A L R F+G+E + ++ +A
Sbjct: 158 TGHPHQKPVSVMAWLVELASRPGDTLLDPFMGSGSTGVAAVGLGRGFLGVEREASWLQVA 217
Query: 262 TKRIA 266
+R+
Sbjct: 218 ERRLR 222
>gi|332829798|gb|EGK02440.1| hypothetical protein HMPREF9455_01397 [Dysgonomonas gadei ATCC
BAA-286]
Length = 473
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 54/282 (19%), Positives = 102/282 (36%), Gaps = 42/282 (14%)
Query: 21 DKIIKGNSISV--LEKLPAKS-VDLIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWDK 74
++I G+S V + +L A ++F DPPYNL Q +G + V +
Sbjct: 174 HRLICGDSTDVNVIGRLMAGQYAHMVFTDPPYNLAPEQFSGFGKNEAQTFAMGVGE---- 229
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S E + F + L R +V + ++ I + + + + + +
Sbjct: 230 -MSEEQFTEFLKKCFLVLIRHSVKGSIHYVCMDWKHVLEIRAAGKVYSEYKNMIVWNKTN 288
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPK--------------AKGYTFNYDALKAANEDVQM 180
M G +++ HE + + GY +++ + +
Sbjct: 289 GGM----GSFYRSKHELIFMFQNNQDLPEEILDARITDIEQTGYEAHHELIFVFKNGRER 344
Query: 181 RSDWLIPICSGSER--LRNKDG-----------EKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G R + + G K HPT KP L++ ++ + G II
Sbjct: 345 NVNNFMLGQTGRYRTNVWDYPGASSFNKTADVSTKDHPTPKPVKLVADAIMDCSLIGHII 404
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
LD F GSGT+ A + R ++ Y D+ +R
Sbjct: 405 LDIFSGSGTTIIAADQTERVAYVADLGPGYCDLNVRRYIRYC 446
>gi|218296686|ref|ZP_03497404.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
gi|218242999|gb|EED09532.1| DNA methylase N-4/N-6 domain protein [Thermus aquaticus Y51MC23]
Length = 237
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 34/245 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G ++ VL L +V+ + DPPY G RP+ + + E +
Sbjct: 12 RLHHGEALEVLASLKTGAVEAVLTDPPYGT---GHWRRPESGQGADPRAVYGR----EPW 64
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D+++ AWL RV + ++ R+ L L + P P R
Sbjct: 65 DSWSLAWLPEALRVARGPVLFFLPQD-----RLEEALAFARERGLPFRLLIWGKPDPRPR 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ A E ++ + + S R
Sbjct: 120 PQGPAYAFEPVLAL----------------------RGLPGRGKDLFLATSPRPGRDGEA 157
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP QKP ++++ ++ +++PGD +LDPF GSG++G A L R F+G+E + ++ +A
Sbjct: 158 TGHPHQKPVSVMAWLVELASRPGDTLLDPFMGSGSTGVAAVGLGRGFLGVEREASWLQVA 217
Query: 262 TKRIA 266
+R+
Sbjct: 218 ERRLR 222
>gi|317013156|gb|ADU83764.1| type IIS restriction enzyme M2 protein (mod) [Helicobacter pylori
Lithuania75]
Length = 287
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 98/269 (36%), Gaps = 37/269 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-DSWDKFSSFEAYDAFTRAWLL 90
+ ++ SVDLI PPY + A + +E Y L
Sbjct: 14 MHEVLDNSVDLIITSPPYFNIKDYTKNGTQDLQHSAQHVEDLGALEKYEDYLLGLLKVWL 73
Query: 91 ACRRVLKPNGTLWV----------IGSYHNIFRIGTMLQNLNFWILND------------ 128
C R LKPNG L + + + H I + ++ IL+D
Sbjct: 74 ECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQHSILHDLNNTLENKPKMF 133
Query: 129 ----IVWRKSNPM--------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+W+++NP P R QN E + K K T +
Sbjct: 134 LLDVYIWKRTNPTKRLMFGSYPYPRNFYAQNTIEFIGVFVKDGKPKQPTEEQKEQSQLTQ 193
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + I +N H L R++ + GD++LDPF GSGT
Sbjct: 194 EEWVE--FTKQIWEIPIPNKNDIAFGKHAALMSAELARRLIRLYSCVGDVVLDPFSGSGT 251
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ AK L+R+FIG E+ ++Y + +++
Sbjct: 252 TLREAKLLKRNFIGYELYENYKPLIEQKL 280
>gi|50843057|ref|YP_056284.1| ParB family DNA methylase [Propionibacterium acnes KPA171202]
gi|50840659|gb|AAT83326.1| DNA methylase (ParB family) [Propionibacterium acnes KPA171202]
Length = 416
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/251 (18%), Positives = 88/251 (35%), Gaps = 34/251 (13%)
Query: 20 KDKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ + +E L +L+ DPPYN+ D ++ DK
Sbjct: 166 RHRLVCGDATNAGDIELLMDGKKANLVLTDPPYNVAFESS---------DGLSIKNDKM- 215
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S + + F A V + + +V + Q+ F + +W K +
Sbjct: 216 SADGFYEFLLAAFTQMAGVCEKGASAYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSL 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ ++Q+ L + K Y R
Sbjct: 276 VLGRSPYQWQHE-PVLYGWVKTGKHTWYADRKQTTVW--------------------RFD 314
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP LL+ + +ST+ I+LD F GSG++ + R +E+ +
Sbjct: 315 KPRRNADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELDEK 374
Query: 257 YIDIATKRIAS 267
Y + +R A
Sbjct: 375 YASVILRRYAD 385
>gi|298346399|ref|YP_003719086.1| putative site-specific DNA-methyltransferase [Mobiluncus curtisii
ATCC 43063]
gi|298236460|gb|ADI67592.1| possible site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Mobiluncus curtisii ATCC
43063]
Length = 405
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 52/290 (17%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+D + G+++ ++EKL SV+ + PY + D S+ + E
Sbjct: 101 RDSFVVGDALQLIEKLKDGSVNAVVTSTPYWAMRVYD-EPGERLWADGEYCSFGLEQTPE 159
Query: 80 AYDAFTRAWLLACRRVLKPNGT-LWVIGSYHN---------------------------- 110
+ + L A + +G+ W I +N
Sbjct: 160 GFIRHSVEVLYALLPKIASDGSVWWNIMDSYNTRTQIRGSAVETLHAMQGKDERSWKDHK 219
Query: 111 -------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RI + +++ + I W K P + R E
Sbjct: 220 YLRYSAGHSYLKDGEQCLIPQRIAQRAAQIGYYVKSTISWCKQATTPEPQQSRVSRNVEY 279
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
++ + FN D+ R S L G H Q P
Sbjct: 280 ILHLTRERTP---KFNKATYLELPSDLGGRQSLESDKLSDFWYLPTSSGRDGHGAQFPVQ 336
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
L R + ST PGD++LDPF G+GT+ AKKL R++IG ++ +Y+ A
Sbjct: 337 LPGRCIAISTDPGDVVLDPFMGAGTTAIAAKKLDRNYIGFDVSAEYLATA 386
>gi|229051402|ref|ZP_04194907.1| DNA methylase N-4/N-6 [Bacillus cereus AH676]
gi|228721971|gb|EEL73411.1| DNA methylase N-4/N-6 [Bacillus cereus AH676]
Length = 301
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/304 (21%), Positives = 100/304 (32%), Gaps = 89/304 (29%)
Query: 44 FADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
PPY + V + E Y + + +RVL+ +GTLW
Sbjct: 2 VTSPPYWGLRDY-----------GVDGQIGLEETVEEYVSNLVSVFREVKRVLRDDGTLW 50
Query: 104 VIGSY--------HN---------------------------------------IFRIGT 116
+ N +R+
Sbjct: 51 LNLGDAYAGSGRGRNADGKGNPGNNHFQSVGQVTGIVSVTKSVDGLKPKDLIGLPWRVAF 110
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
LQ +++ DIVW K N MP R +HE + S SPK + +
Sbjct: 111 ALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSPKYYYDHESIKEPAVYGQ 170
Query: 177 DVQMRSDWLIPICSGSERLRNKDG-------------------------------EKLHP 205
S+ ++R + G ++ H
Sbjct: 171 QDVRGSEGAFGPPQRAKRTSKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVSTKPLKEAHF 230
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
PEAL+ +++ I++DPFFGSGT G VA K R+FIGIE+ YI+I+ + +
Sbjct: 231 ATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGYIEISDRLL 290
Query: 266 ASVQ 269
+ VQ
Sbjct: 291 SDVQ 294
>gi|194337015|ref|YP_002018809.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309492|gb|ACF44192.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 547
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 60/193 (31%), Gaps = 18/193 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L A V I+ DPPYN + +D
Sbjct: 40 NMLIQGDNLLALKALEQDYAGKVKCIYIDPPYNTGNAFE--------------HYDDGIE 85
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
+ L R +L +G++W+ + + + V +
Sbjct: 86 HSQWLNLMAPRLKILRDLLANDGSIWISIDDDESHYLKVLCDEIFGRRNFVNNVIWEKKY 145
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
P + ++H+ ++ + + + + +D S ++
Sbjct: 146 SPQNDAKWLSDSHDHILVYAKNKEIWRPYLLPRTEEMDKRYKNYDNDLRGLWKSSDLSVK 205
Query: 197 NKDGEKLHPTQKP 209
+P Q P
Sbjct: 206 TYSSSTDYPIQIP 218
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ + E + T KPE L+ RI+ +++ GD++LD F GSGT+ AV K+ R +IGI
Sbjct: 288 KREGKQFNSENVFATPKPEKLVYRIMALASREGDLVLDSFLGSGTTAAVVHKMGRKWIGI 347
Query: 252 EMKQDYIDIATKRIAS 267
E+ + R+
Sbjct: 348 ELGEHAKTHCYSRLKQ 363
>gi|134297344|ref|YP_001121079.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134140501|gb|ABO56244.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
G4]
Length = 447
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 48/291 (16%), Positives = 86/291 (29%), Gaps = 55/291 (18%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G++ + V + + L F PPY Q +
Sbjct: 150 HRLICGDASDPLVVATLMQGEQASLCFTSPPYGNQRDYTSG------------------G 191
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNL---NFWILNDI 129
+D R + +G + V I L + +
Sbjct: 192 IADWDGLMRGVF--AHVPMAADGQVLVNLGLIHRDNEFIPYWDQWLDWMRTQGWRRFAWY 249
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
VW + MP R + E + K F +
Sbjct: 250 VWDQGPGMPGDWQGRLAPSFEFIFHFNRQTRKPNKTVPCKFAGQETHLRADGSSTAMRGK 309
Query: 186 IPICSG-------------------SERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGD 225
+G R + K G+ + HP P L ++ + T G+
Sbjct: 310 DGQVNGWTAAGQPTQDCRIPDSVIRVMRHKGKIGKDIDHPAVFPVTLPVEVIEAYTDEGE 369
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
++ +PF GSGT+ A++ R +E+ +Y+D+A R P + L
Sbjct: 370 VVFEPFGGSGTTLMAAQRTGRIGRAVEIAPEYVDVALLRFQQNFPGVPVTL 420
>gi|258592088|emb|CBE68393.1| Modification methylase BglI (M.BglI) (N(4)-cytosine-specific
methyltransferase BglI) (BglI modification
methyltransferase) [NC10 bacterium 'Dutch sediment']
Length = 338
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/297 (19%), Positives = 95/297 (31%), Gaps = 54/297 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN-------------------------- 54
++I G+SI+VL PA S+DL F PPY + N
Sbjct: 35 NRIYTGDSIAVLRSFPAASIDLSFWSPPYFVGKNYEAHLTFQQWQELLRGVIVEHARVMK 94
Query: 55 -GQLYRPDHSLVDAVTDSWD-----KFSSFEAYDAFTRAWLLACRRVLKPNG---TLWVI 105
G + S + TD+ S + L A ++ K +
Sbjct: 95 SGSFMVINISDILCFTDTEMPRYMANNISNKKIAITREDVLAAMKKHPKASRYELAKLFG 154
Query: 106 GSYHNIFRIGTMLQNLN----------------FWILNDIVWRKSNPMPNFRGRRFQNAH 149
S I R + + + + N+
Sbjct: 155 CSEQTIQRRAEHNNVRGGKYEAGTKVFVVGGLLQGWAESVGLYLYDRRIWHKDPCWANSR 214
Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC--SGSERLRNKDGEKLHPTQ 207
+ Y + + + D G +R+ H +
Sbjct: 215 WHSNSY-RAVDEFEYLYVFWKPGIIDVDRNRLKKNEWAEWGSRGVWNIRSVQRNGRHECE 273
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PE L R++ + PGD+++DPF GSGT+ +A KL+R +IGI+ + Y +A R
Sbjct: 274 FPEMLAERVIRLFSDPGDVVIDPFVGSGTTTRMAHKLKRKYIGIDRLKKYTKLAESR 330
>gi|304316272|ref|YP_003851417.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777774|gb|ADL68333.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 432
Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 38/278 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S EKL + PPY + + A + W F +
Sbjct: 171 HRLMCGDSTKDEDFEKLMEGCHAQMAVTSPPYGVGKEYE---------KAGIEPW--FET 219
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ L G L+ GS + + ++ L+ +
Sbjct: 220 VRPVIRNLCRYADIVCWNL---GDLYATGSQFIEPTSVYSVNMFLDNGYRPIWIRIWKKQ 276
Query: 137 MPNF-------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
NF + +E + S + + Y +A S +
Sbjct: 277 GQNFGVGPYHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAG---HSYKFVKRL 333
Query: 190 SGSERLR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ ER + K HP P L R + + G I+L+PF GSGT+
Sbjct: 334 TKEERKKWGYAGIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTII 393
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
A++ R +E+ Y D+A KR ++L
Sbjct: 394 AAEQTERKCYAMELSPVYCDLAVKRWEEFTGEKAVKLE 431
>gi|303245319|ref|ZP_07331603.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio fructosovorans
JJ]
gi|302493168|gb|EFL53030.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio fructosovorans
JJ]
Length = 445
Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 56/269 (20%), Positives = 103/269 (38%), Gaps = 37/269 (13%)
Query: 20 KDKIIKGN---SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+ S + L + +L DPPYN+ + G+ + +
Sbjct: 166 RHRLLCGDATSSTDLAALLGEERPELAVTDPPYNVAVEGKAGKILNDN-----------M 214
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
A+ F A VL ++V S F + ++WRK+
Sbjct: 215 GETAFREFLGRAFAALFEVLADGAAVYVAHSETEGLTFRESFLAAGFKLAGCLIWRKNVH 274
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYT------------------FNYDALKAANEDV 178
+ + HE +++ + + A ++V
Sbjct: 275 VLGRSDYHW--QHEPILYGWKPTGRHAWFGGRRQTTLLEALPGAVLLDDGRVQIPAGDNV 332
Query: 179 QMRS--DWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ S D + I GS +K HPT KP ALL R + +S++PGD+++DPF GSG
Sbjct: 333 YLVSGQDLSVEIAPGSIISVDKPPRSDAHPTMKPVALLERFIRNSSRPGDLVIDPFGGSG 392
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
++ + L RS +E+ + D+ +R
Sbjct: 393 STFMACEGLGRSCRTLELDPRFCDVIVRR 421
>gi|300937905|ref|ZP_07152695.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
gi|300457086|gb|EFK20579.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
Length = 177
Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 41/216 (18%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + D L G
Sbjct: 105 AAYVGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ HPT+KP L ++ S T P I+LDPF GSG++
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGST 177
>gi|86139841|ref|ZP_01058407.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
gi|85823470|gb|EAQ43679.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
Length = 420
Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 93/248 (37%), Gaps = 34/248 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVD--LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+++ G+S V+ +L SV L+ DPPY + + + + +
Sbjct: 175 HRLVCGDSTSADVVGRLL-GSVKPLLMVTDPPY--GVEYDPSWRNQAGAAKTKRTGKVLN 231
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
A + AW L P ++ + + L F I + I+W K
Sbjct: 232 DDRA--DWREAW------SLFPGDVAYIWHGALHAATVADSLTAAGFAIRSQIIWAKDRL 283
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + Y D + + W I +
Sbjct: 284 VLSR------------GDYHWQHEPCWYAVRAKGKGHWAGDRKQTTLWQIAN-------K 324
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++D E +H TQKP + R +++++ PG + +PF GSGT+ A+ R G+E+
Sbjct: 325 DQDAETVHGTQKPVDCMRRPILNNSNPGQAVYEPFMGSGTTLIAAETTGRICYGVELNPA 384
Query: 257 YIDIATKR 264
Y+D+A +R
Sbjct: 385 YVDVAIER 392
>gi|332983336|ref|YP_004464777.1| DNA methylase N-4/N-6 domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332701014|gb|AEE97955.1| DNA methylase N-4/N-6 domain protein [Mahella australiensis 50-1
BON]
Length = 432
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/279 (17%), Positives = 88/279 (31%), Gaps = 38/279 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S EKL + PPY + + A + W F +
Sbjct: 171 HRLMCGDSTKDEDFEKLMEGCHAQMAVTSPPYGVGKEYE---------KAGIEPW--FET 219
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ L G L+ GS + + ++ L+ +
Sbjct: 220 VRPVIRNLCRYADIVCWNL---GDLYATGSQFIEPTSVYSVNMFLDNGYRPIWIRIWKKQ 276
Query: 137 MPNF-------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
NF + +E + S + + Y +A S +
Sbjct: 277 GQNFGVGPYHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAG---HSYKFVKRL 333
Query: 190 SGSERLR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ ER + K HP P L R + + G I+L+PF GSGT+
Sbjct: 334 TKEERKKWGYAGIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTII 393
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
A++ R +E+ Y D+A KR ++L
Sbjct: 394 AAEQTERKCYAMELSPVYCDLAVKRWEEFTGEKAVKLED 432
>gi|315611985|ref|ZP_07886903.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
49296]
gi|315315974|gb|EFU64008.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis ATCC
49296]
Length = 224
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 87/249 (34%), Gaps = 32/249 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++++ P DL DPPY + Y V + K +
Sbjct: 4 FFNNDCMDIMKQYPDDYFDLAIVDPPYFSGPEKREYYGRKVSPIGVNRLYGK---TSEWQ 60
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
R + RV K V D + + +
Sbjct: 61 IPNRDYFDELFRVSKNQIIWGV--------------------NYFDYSFDSGRIVWDKVN 100
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
+ + + S + + + + N +Q +S I G+ + + +
Sbjct: 101 GHSSFSDCEIAYCSLHDSTRLFRYMW------NGMMQGKSISEGHIQQGN---KALNEVR 151
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+HPTQKP L +L + K GD ILD GS +S ++L ++G E+ ++ ++A
Sbjct: 152 IHPTQKPVNLYLWLLRNYAKEGDKILDTHVGSASSLIACQELGFDYVGCELDKNIFNLAQ 211
Query: 263 KRIASVQPL 271
+R+ + +
Sbjct: 212 QRLDAYEKQ 220
>gi|256396438|ref|YP_003118002.1| DNA methylase N-4/N-6 domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256362664|gb|ACU76161.1| DNA methylase N-4/N-6 domain protein [Catenulispora acidiphila DSM
44928]
Length = 345
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 65/342 (19%), Positives = 111/342 (32%), Gaps = 103/342 (30%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++I+ G+ + L +LP +V + PPY + D + +
Sbjct: 9 RNRILVGDVRARLSELPDAAVHCVITSPPYWSLRDY-----------GHPDQIGAEPTVQ 57
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVI---GSYHNIF-------------RIGTMLQNLNF 123
A+ A RVL+P+G LW+ G +I R+ + +
Sbjct: 58 AWAETIAAVCGDLGRVLRPDGVLWLNLGDGYSRHIREGAAKKCLLLGPERVALKMTQSGW 117
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG---------YTFNYD----- 169
+ N ++W K NPMP R +HE L + SP+ T N
Sbjct: 118 LLRNKVIWAKRNPMPANVRDRLSTSHEYLYCFTRSPQYYFDLDAIREPAVTANKQQRAGN 177
Query: 170 --------ALKAANED----------------VQMRSDWLIPICSGSERLRNKDGEKLHP 205
A+ + N ++S L + H
Sbjct: 178 RATYPPRTAVPSLNGGSTSRVDLNHGLSAMKARGVQSHPLGKNPGDVWSISTASYHGAHF 237
Query: 206 TQKPEALLSRILVSSTKP--------------------------------------GDII 227
P L+ R L+++ ++
Sbjct: 238 ATFPVELVRRPLLATCPERTCAACGTPWARTLLGTGHRRASSGPLRQACLCQAGWQPGLV 297
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
LDPF G+GT G A++ R ++GIE+ D+ +AT RIA +
Sbjct: 298 LDPFIGAGTVGVAAERFGRDWLGIELNPDFAALATARIAEAR 339
>gi|86741041|ref|YP_481441.1| DNA methylase N-4/N-6 [Frankia sp. CcI3]
gi|86567903|gb|ABD11712.1| DNA methylase N-4/N-6 [Frankia sp. CcI3]
Length = 330
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 66/303 (21%), Positives = 100/303 (33%), Gaps = 85/303 (28%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
VL LP SV + PPY + + AY A
Sbjct: 24 QVLRGLPDASVHCVVTSPPYFGLRDY-----------GEPGQIGLEPTPAAYVARLAEVF 72
Query: 90 LACRRVLKPNGTLWVIGSYHN--------------------------------------- 110
RRVL P+GT W+
Sbjct: 73 TEVRRVLHPDGTCWLNLGDSYAGKANGGPSVGLTRRADRAELIPPRRNTTAAAPYKSLLG 132
Query: 111 -IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+R+ LQ+ + + N IVW K+N MP RF + ETL + + Y F+ D
Sbjct: 133 IPWRVAFALQDAGWTVRNAIVWAKTNAMPESVTDRFASRTETLFLLTR---SARYHFDLD 189
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEK--------------------------- 202
++ D ++W G R ++ E
Sbjct: 190 PVRETPVDPTGGAEWAQRRKQGVPGRRGRNPESSVTAADRDFAAHQAGRNPGDVWQIPVA 249
Query: 203 ----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
H P + R +++ PG ++LDPF GS T+G VA +L R ++GI++ DY
Sbjct: 250 NFPGAHFAVFPPEIPRRAILTGCPPGGVVLDPFSGSATTGMVALQLGRRYVGIDLNPDYH 309
Query: 259 DIA 261
+A
Sbjct: 310 RLA 312
>gi|317505265|ref|ZP_07963195.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
salivae DSM 15606]
gi|315663609|gb|EFV03346.1| DNA (cytosine-5-)-methyltransferase domain protein [Prevotella
salivae DSM 15606]
Length = 668
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 58/339 (17%), Positives = 106/339 (31%), Gaps = 96/339 (28%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRP------------------ 60
+ +++G +S L K VDL++ DPP+ +
Sbjct: 63 NLVLRGECLSACAYLKDKGMKVDLVYIDPPFASGADYAKKVYIRRNPKVAEAIKQAETEI 122
Query: 61 -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHN 110
+ D WDK E Y + L+A + V+ +++V IG Y
Sbjct: 123 DSEELRNFEEKMYGDVWDK----ERYLNWMYENLMAIKSVMSDTASIYVHLDWHIGHYVK 178
Query: 111 I-----------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE--T 151
I R+ + + ++D+++ S + +E
Sbjct: 179 ILMDEIFGEDNFRNEIVWQRVYSHNDANKYGQIHDVIFYYSKDNEKYTWNIQYQPYEEKY 238
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-------- 203
L S + L + ++ S ++ ++
Sbjct: 239 LKMYSMDDGDGRKYKVENTLGPGGRGSTYEWNGVVRTWRYSFETMSELEKQGLLYYTSSG 298
Query: 204 -----------------------------------HPTQKPEALLSRILVSSTKPGDIIL 228
+ TQKPEALL RI+ +S+ G ++
Sbjct: 299 FPKKKIYLDEMPGKPLQSIWTDINVIAGQAKELVDYATQKPEALLERIIKASSNEGMLVA 358
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
D F GSG + VA KL R+FI ++ + I+ R+
Sbjct: 359 DFFGGSGVTATVASKLGRNFIHCDIGINSIETTRDRLRK 397
>gi|229551578|ref|ZP_04440303.1| probable site-specific DNA-methyltransferase [Lactobacillus
rhamnosus LMS2-1]
gi|229315043|gb|EEN81016.1| probable site-specific DNA-methyltransferase [Lactobacillus
rhamnosus LMS2-1]
Length = 244
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 85/265 (32%), Gaps = 45/265 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ LP S+D+I D PY ++WDK F Y L
Sbjct: 1 MADLPTASIDMILCDLPYGT----------------TANAWDKVIPF-EYLWGQYERL-- 41
Query: 92 CRRVLKPNGTLWVIGSYHNIFRI---GTMLQNLNFWILNDIVWRKSNPMPNFRGRR---- 144
+KP GT+ + + + L + + + V N R
Sbjct: 42 ----IKPQGTIVLTATERFSADLVQSNPALYRYKWVWIKNTVTNFVNAKNRPLSRFEEIL 97
Query: 145 -----------FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + + T N + AN+ + +
Sbjct: 98 VFSKSGTANFGNSPDTKGMNYFPQGLLPYNKTVNSRKYERANQLHPWNAPDSYTQEWTNY 157
Query: 194 RLRNKDGEK----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+ HPTQKP L + ++ + T+PG+I+LD GSGT+ A R FI
Sbjct: 158 PADVLSYKSERTGWHPTQKPVDLFAYLIKTYTQPGEIVLDNCMGSGTTAIAAMDTNRHFI 217
Query: 250 GIEMKQDYIDIATKRIASVQPLGNI 274
G E+ ++Y A RI
Sbjct: 218 GYELSEEYWRRANDRIKQHHATQTE 242
>gi|75675738|ref|YP_318159.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
gi|74420608|gb|ABA04807.1| DNA methylase N-4/N-6 [Nitrobacter winogradskyi Nb-255]
Length = 470
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 99/259 (38%), Gaps = 34/259 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +I G+S + ++ A V L+ DPPY ++ +W + +
Sbjct: 197 RHRITNGDSTNPEDVARVLAGRVPHLMVTDPPYGVK---------------YDPAWRQAA 241
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLW---VIGSYHNIFRIG---TMLQNLNFWILNDIV 130
+ DA T L R + L+ V +H G L F I IV
Sbjct: 242 GVTSKDAATGKVLNDDRADWREAWELFPGDVAYIWHAGAYCGDVANSLTACRFKIRAHIV 301
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-----EDVQMRSDWL 185
W K + + HE +A + + F + A E
Sbjct: 302 WVKQRHVLG--RGDYHFQHEPCFYAVKEGADERWHFVPEHEVATYTVRDGERGHYEGGRK 359
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
E ++++ G H TQKP + R + ++++PG+++ +PF GSGT+ A+
Sbjct: 360 QSTVWNIEHVKSETG---HGTQKPVEAMKRPIENNSQPGEMVYEPFSGSGTTLIAAEITG 416
Query: 246 RSFIGIEMKQDYIDIATKR 264
R IE+ Y+D+A KR
Sbjct: 417 RKCFAIELNPLYVDVAVKR 435
>gi|268610664|ref|ZP_06144391.1| DNA methylase [Ruminococcus flavefaciens FD-1]
Length = 419
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 34/249 (13%)
Query: 20 KDKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ + L +LI DPPY + +T D
Sbjct: 169 RHRLMCGDATSPEDVNTLMGNTKANLILTDPPYGVSFKSS---------SGLTIQNDSMK 219
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ E Y F + L+ G +V + + F + +W K +
Sbjct: 220 NEEFY-NFLLSAFKCMADHLEKGGAAYVFHADTEGLNFRRAFIDAGFHLAGCCIWVKDSL 278
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +Q HE +++ + + + D
Sbjct: 279 VLG--RSDYQWQHEPVLYGFMQNGKHKWYSDRKQTTIWHFDKP----------------- 319
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT KP LL + +ST+ +++D F GSG++ +++ R +E+ +
Sbjct: 320 --KRNANHPTSKPLDLLGYPIGNSTQENAMVIDTFGGSGSTLMACEQMNRICYMMELDEK 377
Query: 257 YIDIATKRI 265
Y + +R
Sbjct: 378 YASVILRRY 386
>gi|254719905|ref|ZP_05181716.1| phage integrase family protein [Brucella sp. 83/13]
gi|306838791|ref|ZP_07471623.1| phage integrase family protein [Brucella sp. NF 2653]
gi|306406127|gb|EFM62374.1| phage integrase family protein [Brucella sp. NF 2653]
Length = 497
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 40/244 (16%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV----TDSWDKFSSFEAYDAF 84
+ L ++ PY + P +AV D + + +
Sbjct: 283 LEKLPRVKNN---------PYVHGRAYRRT-PSQRHAEAVAAHFRDRQGRTVVNDDNGHW 332
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
R RVLK G +H + + F ++ IV+RK +
Sbjct: 333 LRPAFNQIHRVLKDGGFAISFYGWHKVDLFMDAWKTAGFRVVGHIVFRKHYAS---SAKF 389
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ HE + D + + P G +LH
Sbjct: 390 LRYQHEQAYLLAKGNVRFP-------------DSPIPNVIDFPYT----------GNRLH 426
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PTQKP L+ ++ + TKP D++LDPF GSG++ A A+ L R +IGIE+ +++ A KR
Sbjct: 427 PTQKPVEALAPLIKAFTKPDDLVLDPFCGSGSTLAAAQHLGRDWIGIELDKNHYATACKR 486
Query: 265 IASV 268
+AS+
Sbjct: 487 LASM 490
>gi|126661667|ref|ZP_01732677.1| hypothetical protein CY0110_09335 [Cyanothece sp. CCY0110]
gi|126617047|gb|EAZ87906.1| hypothetical protein CY0110_09335 [Cyanothece sp. CCY0110]
Length = 226
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KF 75
++ ++II+G+ + +L++LP KS+DLI DPPY + WD ++
Sbjct: 1 MKYLNQIIQGDCLEILQELPDKSIDLIILDPPYW---------------KVIQQKWDYQW 45
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ E Y + WL RV+K +G+L++ G N+F + + +L F I+ K
Sbjct: 46 RTEEDYKQWCLQWLPEISRVIKLSGSLYLFGYLRNLFYLYEPIIDLGFNFRQQIIINKGM 105
Query: 136 PMPNFRGRRFQNAHETL 152
+ R + +
Sbjct: 106 KAISGRATKNYKMFPNV 122
>gi|125974145|ref|YP_001038055.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
gi|125714370|gb|ABN52862.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
Length = 432
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 51/278 (18%), Positives = 88/278 (31%), Gaps = 38/278 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S EKL + PPY + + A + W F +
Sbjct: 171 HRLMCGDSTKNEDFEKLMEGCHAQMAVTSPPYGVGKEYE---------KAGIEPW--FET 219
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ L G L+ GS + + ++ L+ +
Sbjct: 220 VRPVIRNLCRYADIVCWNL---GDLYATGSQFIEPTSVYSVNMFLDNGYRPIWIRIWKKQ 276
Query: 137 MPNF-------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
NF + +E + S + + Y +A S +
Sbjct: 277 GQNFGVGPYHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAG---HSYKFVKRL 333
Query: 190 SGSERLR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ ER + K HP P L R + + G I+L+PF GSGT+
Sbjct: 334 TKEERKKWGYAGIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTII 393
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
A++ R +E+ Y D+A KR I+L
Sbjct: 394 AAEQTERKCYAMELSPVYCDLAVKRWEEFTGEKAIKLE 431
>gi|256003546|ref|ZP_05428536.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
2360]
gi|255992570|gb|EEU02662.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
2360]
gi|316941389|gb|ADU75423.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
1313]
Length = 432
Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 51/278 (18%), Positives = 87/278 (31%), Gaps = 38/278 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S EKL + PPY + + A + W F +
Sbjct: 171 HRLMCGDSTKDEDFEKLMEGCHAQMAVTSPPYGVGKEYE---------KAGIEPW--FET 219
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ L G L+ GS + + ++ L +
Sbjct: 220 VRPVIRNLCRYADIVCWNL---GDLYATGSQFIEPTSVYSVNMFLENGYRPIWIRIWKKQ 276
Query: 137 MPNF-------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
NF + +E + S + + Y +A S +
Sbjct: 277 GQNFGVGPYHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAG---HSYKFVKRL 333
Query: 190 SGSERLR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ ER + K HP P L R + + G I+L+PF GSGT+
Sbjct: 334 TKEERKKWGYAGIWEMTTVRANKEHPAMFPVELPWRCIKMHSDKGGIVLEPFSGSGTTII 393
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
A++ R +E+ Y D+A KR I+L
Sbjct: 394 AAEQTERKCYAMELSPVYCDLAVKRWEEFTGEKAIKLE 431
>gi|320103977|ref|YP_004179568.1| ParB domain-containing protein nuclease [Isosphaera pallida ATCC
43644]
gi|319751259|gb|ADV63019.1| ParB domain protein nuclease [Isosphaera pallida ATCC 43644]
Length = 446
Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 57/301 (18%), Positives = 102/301 (33%), Gaps = 53/301 (17%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNG---------------------- 55
+++ G+S V L + L+ DPPYN+++
Sbjct: 163 HRLLCGDSGKPEDVDRLLNGAVIHLVNTDPPYNVRVEPRSNNAIAAGLSSFEVTHHQKMD 222
Query: 56 -----QLYRPDHSLVDAVTDSW-DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +P + A + F S E ++ AW RVL+ ++ G Y
Sbjct: 223 VVRHPEKAKPTGKKLRAKDRPLANDFVSDEVFEKMLHAWFGNLARVLESGRAFYIWGGYA 282
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
N +L+ + I+W K +P+ T + + Y +
Sbjct: 283 NCANYPPVLKATGLYFSQAIIWVKEHPV------------LTRKDFMGNHEWCFYGWREG 330
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
A W + + +H T+KP L R + S++PG+ +LD
Sbjct: 331 AAHVFLGPNNAVDVWSVK--------KVNPQSMIHLTEKPVELAVRAIQYSSRPGENVLD 382
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
F GSG++ A++ R +E+ Y D+ +R + G V PR
Sbjct: 383 LFGGSGSTLIGAEQTGRKAYLMELDPLYCDVICER--WCKFTGKEAFRVDPQGNQTPRSE 440
Query: 290 F 290
Sbjct: 441 L 441
>gi|296132591|ref|YP_003639838.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
sp. JR]
gi|296031169|gb|ADG81937.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
potens JR]
Length = 612
Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/190 (12%), Positives = 56/190 (29%), Gaps = 19/190 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ E+ ++ I+G+++ VL+ L V I+ DPPYN +
Sbjct: 86 PVKEDSVDWDNTQNLYIEGDNLEVLKLLQESYLNKVKCIYIDPPYNTGKDFIYRDNFRQE 145
Query: 65 VDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ + + + L R +L+ +G +++ +
Sbjct: 146 NGEYLEDSGQVDDEGNRLFQNTESNGRFHSDWLTMMYSRLKLARNLLRDDGVIFISIDDN 205
Query: 110 NIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
+ + + KS + HE ++ S + +
Sbjct: 206 EVANLRKICDEIFGTGNFICSFIWKSKLGKVGTTSTVSSVHEYILTYSKNIDLICFKMIV 265
Query: 169 DALKAANEDV 178
+ E++
Sbjct: 266 KQSEGRKENL 275
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 148 AHETLIWASPSPKAKG-YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
H L Y ++ D + + +GS L++ + +K
Sbjct: 325 KHGHLRLVKKDNNRFEIYRIFPESESQIAHDTIIPG-EIGTTANGSITLKSLNMQKTFDY 383
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP L+ ++ + DIILD F GS T+ + R +I +++
Sbjct: 384 SKPTELICFLMDLAKSKDDIILDFFSGSATTAHAVMQLNAEDGGNRKYIMVQL 436
>gi|159028775|emb|CAO89946.1| pvuIIM [Microcystis aeruginosa PCC 7806]
Length = 883
Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 65/318 (20%), Positives = 107/318 (33%), Gaps = 71/318 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPY---------NLQLN-------------GQLYRPD 61
GNS++++ +LP +SVDLI PP+ N+ + ++ +P
Sbjct: 27 YLGNSLTLMGELPDESVDLICTSPPFALVRKKEYGNVDADDYVEWFKIFAGEFYRILKPK 86
Query: 62 HSLVDAVTDSWDKFSS------FEAYDAFTRAWLL------------------------- 90
SLV + SW K FE + L
Sbjct: 87 GSLVIDIGGSWLKGFPVRSLYHFELVIELCKPRLEGGLGFFLAQELFWYNPAKLPTPAEW 146
Query: 91 --ACRRVLKP--NGTLWVIGSYH-----------NIFRIGTMLQNLNFWILNDIVWRKSN 135
R +K N W+ H + +++N L S
Sbjct: 147 VTVRRERVKDAVNTVWWLSKEPHPKANNKRVLRPYSEAMKNLIKNGYEAKLRPSGHDIST 206
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--- 192
N RG T N+ Q + + +
Sbjct: 207 KFQNDRGGAIPPNIITDSIQERGASIGSPVLGEFNWILENDLGQPVNVISASNTASNDYY 266
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+R ++G K HP + P+AL ++ T+PGD++LDPF GS +G VA+ L R ++ E
Sbjct: 267 QRRCKEEGVKPHPARFPQALPEFVISLCTEPGDLVLDPFAGSNMTGRVAETLERRWLAFE 326
Query: 253 MKQDYIDIATKRIASVQP 270
+ +DY+ + R P
Sbjct: 327 LNEDYMIASQFRFEQDAP 344
>gi|21229692|ref|NP_635609.1| methyltransferase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66766569|ref|YP_241331.1| methyltransferase [Xanthomonas campestris pv. campestris str. 8004]
gi|21111176|gb|AAM39533.1| methyltransferase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66571901|gb|AAY47311.1| methyltransferase [Xanthomonas campestris pv. campestris str. 8004]
Length = 543
Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 11/195 (5%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W + II+G++ L L ++ I+ DPPYN +Y D D +F
Sbjct: 61 WDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVY------NDRFVDKTHRF 114
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ F L + +L +G ++V + +FR+G ++ V +
Sbjct: 115 R-HSLWLEFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGENNFIANVIWQK 173
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
P + F + HE +I D SG
Sbjct: 174 VFSPKGTAQHFSDDHEYVIIYGRDKNKWRPNLLARTAAQDRAYKNPDDDPRGLWTSGDLS 233
Query: 195 LRNKDGEKLHPTQKP 209
RN + ++ P
Sbjct: 234 ARNYYSKGVYSIVGP 248
>gi|170766101|ref|ZP_02900912.1| hypothetical adenine-specific methylase YhdJ [Escherichia albertii
TW07627]
gi|170125247|gb|EDS94178.1| hypothetical adenine-specific methylase YhdJ [Escherichia albertii
TW07627]
Length = 106
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
D + HPTQKPEALL RI+++S+ PGD++LDPF GS T+GAVA R FIGIE+ +YI
Sbjct: 2 DEYENHPTQKPEALLQRIILASSNPGDVVLDPFAGSFTTGAVAIATGRKFIGIEINNEYI 61
Query: 259 DIATKRIASVQPLGNIELTVLTGKRT 284
+ +R+ +L + ++T
Sbjct: 62 KMGLRRLNISSHYSVKDLAKVKKRKT 87
>gi|218690017|ref|YP_002398229.1| site-specific DNA-methyltransferase, component of type III
restriction-modification system [Escherichia coli ED1a]
gi|218427581|emb|CAR08482.2| site-specific DNA-methyltransferase, component of type III
restriction-modification system [Escherichia coli ED1a]
Length = 632
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/225 (12%), Positives = 66/225 (29%), Gaps = 28/225 (12%)
Query: 13 QNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
++ +W K+ +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 87 KDESVDWHNTKNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNMK 146
Query: 67 AVTDSWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + + L R +LK +G +++ +
Sbjct: 147 NYLEITGQTEDGARLSTNTETSGRYHTDWLNMIYPRLKLARNLLKEDGVIFISIDDTEVD 206
Query: 113 RIGTML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + + + P F + H+ ++ + K+ N +
Sbjct: 207 NLKKVCSEIFGEENFVANIVWQKKYSPQNDATYFSDMHDHILVYAKQRKSSKNDSNGWNI 266
Query: 172 KAANED-------VQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D S ++ + P
Sbjct: 267 DFLPRSDEQNAAYKNPDNDPRGVWKSVDLSVKTYSKANDYSITTP 311
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 22/122 (18%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK------DGEKLHPTQKPEALLSRILVSST--KPGDII 227
+ V + W C ++ + + T KP LL RIL +T II
Sbjct: 361 DGVVPTTWWSYKECGHNQEAKQELKKLMEGESVFFDTPKPLRLLDRILHLATTNDKDCII 420
Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEM-----KQDYI---DIATKRIASVQPLGN 273
LD F GSGT+ R +I +++ + Y ++ +R+
Sbjct: 421 LDFFAGSGTTAHATLNKNIADSGSRRYIAVQLPEKIDDEKYYTISELTKERLRRAGKKVR 480
Query: 274 IE 275
+
Sbjct: 481 ED 482
>gi|300788916|ref|YP_003769207.1| adenine-specific DNA-methyltransferase [Amycolatopsis mediterranei
U32]
gi|299798430|gb|ADJ48805.1| putative adenine-specific DNA-methyltransferase [Amycolatopsis
mediterranei U32]
Length = 268
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 92/264 (34%), Gaps = 32/264 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
GN+ ++ +LP SVD + PPY + + V + + + Y
Sbjct: 12 FHIGNAAGIVAELPESSVDCVVTSPPYWGLRDYR-----------VAEQLGGERTVDEYV 60
Query: 83 AFTRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
A A VL P GT+W+ GS+ + G+ + +
Sbjct: 61 ARLAAVFDELVHVLAPQGTVWLNLGDSYGGSWGHYVAAGSTARTAAERSRTPYGTHRPPQ 120
Query: 137 MPNFRGR---RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ L + + +A + D R I + +
Sbjct: 121 ASHRAKDLVGVPWRVTHALQERGWILEREIIWHKPNARPESVRDRFARRYENIFVLTRDR 180
Query: 194 R------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
R + + G HP + + R + +PG +LDPF GSGT+G A
Sbjct: 181 RDPCETSETAVWSISSDRGRVGHPAKGTLEVARRCVRLGCRPGGTVLDPFSGSGTTGIAA 240
Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
++ R FIGI++ D +A +R+
Sbjct: 241 REHRCRFIGIDLNPDCHALALQRL 264
>gi|162148641|ref|YP_001603102.1| DNA methylase N-4/N-6 domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787218|emb|CAP56811.1| putative DNA methylase N-4/N-6 domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 247
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 89/253 (35%), Gaps = 46/253 (18%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ ++ DLI ADPPY + ++
Sbjct: 2 TLLCGDCRDLMPA--QGPYDLILADPPY-------------------------GETSLSW 34
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D WL + L P+G+L V GS + + +IVW K N
Sbjct: 35 DRRVEGWLPLAAQALTPSGSLSVFGSLRSFMATEVDFRAARLRHAQEIVWEKQNGSVFH- 93
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK------------------AANEDVQMRSD 183
RF+ HE ++ P+ +N A A + D
Sbjct: 94 ADRFRRVHELIVQFYPATARWQDIYNVVATTDDARARTVRRKRRPPHTGAIAAGIYRSLD 153
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ +R RN G +HPT+KP LL ++ S P ++ D F GSG +G +
Sbjct: 154 GGPRLARSVQRFRNVHGRAIHPTEKPVPLLDLLVRVSCPPDGLVGDWFAGSGAAGVACRL 213
Query: 244 LRRSFIGIEMKQD 256
R ++G E+ D
Sbjct: 214 AGRRYVGCEIDPD 226
>gi|170724675|ref|YP_001758701.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella woodyi
ATCC 51908]
gi|169810022|gb|ACA84606.1| DNA methylase N-4/N-6 domain protein [Shewanella woodyi ATCC 51908]
Length = 510
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 62/382 (16%), Positives = 117/382 (30%), Gaps = 87/382 (22%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + +I+G+++ L+ L A V IF DPPYN + + Y +
Sbjct: 29 ELSYGEANTDNMLIQGDNLEALKALIPTHAGRVKCIFIDPPYNTKSAFEHYDDNLEHSHW 88
Query: 68 VT--------------DSWDKFSSFEAYDAFTRAWL----------------------LA 91
++ D + + + ++ +
Sbjct: 89 LSMIYPRMELLHQLLADDGSIWITLDDNESHYMKVILDEIFGRKNFVANCIWQKLYTVKN 148
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
+ L ++ S + +L N + +
Sbjct: 149 SAKYLSDMHEHVLVYSKNKQIWERNLLPRTEKSASNYSNADDDKRGAWTTNAIQARNYYS 208
Query: 152 LIWASPSPKA-KGYTFNYDALKAANEDVQMRSDWLIPICSGSE-----RLR--------- 196
L + + + +ED + D I G + R++
Sbjct: 209 LGTYEIVSPSGRKHVPPQGTFWRISEDSFKKLDSDNRIWWGKDGNNVPRVKKFLSEAKDG 268
Query: 197 --------------NKDGEK-----------LHPTQKPEALLSRILVSSTKPGDIILDPF 231
N D +K + T KPE L+ RIL ++K GD++LD F
Sbjct: 269 VVPATFWSYQDAGSNADAKKEVREVFNELDEIFITPKPEKLIQRILNIASKEGDLVLDSF 328
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
GSGT+ AV+ K+ R FIGIE+ + + R V ++ +
Sbjct: 329 LGSGTTSAVSAKMNRKFIGIELGEHAESLCVHRQKKVIDGEQGGIS-----KDVAWQGGG 383
Query: 292 LLVERGLIQPGQILTNAQGNIS 313
+ G+++ N G++
Sbjct: 384 GF---NFYRLGEVIFNENGSLK 402
>gi|313678462|ref|YP_004056202.1| type III restriction-modification system, Mod subunit [Mycoplasma
bovis PG45]
gi|312950447|gb|ADR25042.1| type III restriction-modification system, Mod subunit [Mycoplasma
bovis PG45]
Length = 352
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/346 (16%), Positives = 124/346 (35%), Gaps = 37/346 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
K I+ +++ + + +SVDL+ PPY +++ +++ + + + D
Sbjct: 1 MHTKHTILNIDALKMNSHIDDESVDLVITSPPYPMIKMWDEIFEINE---NEIKTEADVN 57
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNF 123
S+F F + +KP G + + + N ++ +
Sbjct: 58 SAFLKATQFLNNIWEKVDKSIKPGGIVCINIGDATRNLGGNFRLFSNSGQVINFFIKKGY 117
Query: 124 WILNDIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTF------NYD 169
L I+WRK PN G HE ++ + + +
Sbjct: 118 LQLPSIIWRKQTNAPNKFMGSGMLPAGAYATLEHEWILIFRKGITKREFKNAKDKSLRNE 177
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ E SD G ++ + + P L R++ + DI+ D
Sbjct: 178 SAFFWEERNVWFSDLWD--FKGIKQKNDIKNSRDRTAAYPIELPYRLISMFSVKNDIVFD 235
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
PF G+GT+ + L+R+ IG+E+ + + +++L + R++
Sbjct: 236 PFLGTGTTTLASMLLQRNSIGVEIDKSLCNH----FKEYLVKNDVKLVDNFNDKISKRIS 291
Query: 290 FNLLVERGLIQPGQILTNAQGNISATVCADG-TLISGTELGSIHRV 334
+ + + G++L + + V IS ++ SI+++
Sbjct: 292 SHTEFVKKRVNEGKLLKHYNSILGTEVMTSQEKFISFNKVSSINKI 337
>gi|307826187|ref|ZP_07656398.1| DNA methylase N-4/N-6 domain protein [Methylobacter tundripaludum
SV96]
gi|307732826|gb|EFO03692.1| DNA methylase N-4/N-6 domain protein [Methylobacter tundripaludum
SV96]
Length = 308
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 62/313 (19%), Positives = 109/313 (34%), Gaps = 85/313 (27%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
+ + +++L +LP S+DLI DPPY ++WD ++ S
Sbjct: 10 TVHNTDCLTLLSQLPDNSIDLIATDPPY---------------YKVKGEAWDNQWQSKAD 54
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN- 139
+ A+ + L+ RVLKP G+L++ H ++ + +LN ++WRK + N
Sbjct: 55 FFAWLDSILVEYHRVLKPAGSLYLFAGPHLATQVDVAVSQRFN-LLNHLIWRKPSGRHNG 113
Query: 140 --------------------FRGRRFQNAHETLIWA------------------------ 155
++ A E++
Sbjct: 114 GNKELPAPLPYPQTEHILFAESRKKMPFAFESIRSYLDNARTAAGISRKQIDQACGCQMS 173
Query: 156 SPSPKAKGYTF----NYDALKAANED--VQMRSDWLIPICSGSERLRNKDGEKLHPTQ-- 207
+TF NY + +R + +H T
Sbjct: 174 GHWFDRSQWTFPSLANYQTMDKLFGGTLKPYGQLKAEYKAIKQQRRHFAVTKHVHYTNVW 233
Query: 208 --KPE-------------ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
KP L+ I+ +S+KP D++LD F GSG++ ++L R F+G E
Sbjct: 234 DFKPVQWYPGKHPCEKPLDLMRHIIEASSKPNDVVLDTFVGSGSTAIACRELGRGFVGCE 293
Query: 253 MKQDYIDIATKRI 265
M + D A R+
Sbjct: 294 MGEAEFDGAVDRL 306
>gi|257793073|ref|YP_003186471.1| Site-specific DNA-methyltransferase (adenine- specific)
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257479765|gb|ACV60082.1| Site-specific DNA-methyltransferase (adenine- specific)
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 571
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 35/221 (15%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ II G++++ L+ L A V +IF DPPYN +Y + ++ + W
Sbjct: 41 NLIIHGDNLTALKALLPMYAGKVKVIFIDPPYNTGSENWVY--NDNVNSPMMREWLGKVV 98
Query: 73 DKFS--SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
DK + + L R +L +G ++V + + +L +
Sbjct: 99 DKEDLTRHDKWLCMMMPRLKLLRELLSDDGAIFVSCDDNEHHHLRMLLDEVFGDSNFVAN 158
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+AH ++ + + + D N DV
Sbjct: 159 IVWQARKSVQNDTDISDAHNHIVVYAKMRRQRNRRLKED-----NADVWYSETGFAMKPL 213
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+R + + + P L LDPF
Sbjct: 214 PLDRSKFDNPDND-----PRGLWK-------------LDPF 236
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 185 LIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
GS+ L++ GE + KP L+ IL ++ IILD F GSGT+
Sbjct: 336 YGTTTRGSQTLQDIFGETGIFNNPKPVELVKHILRLASDKSSIILDSFAGSGTTAHAVLS 395
Query: 244 L------RRSFIGIEMKQDYIDIATKRIAS 267
+ R FI +EM+ I +R+
Sbjct: 396 MNKEDGGNRKFILVEMEDYADRITAERVRR 425
>gi|261819793|ref|YP_003257899.1| DNA methylase N-4/N-6 [Pectobacterium wasabiae WPP163]
gi|261603806|gb|ACX86292.1| DNA methylase N-4/N-6 domain protein [Pectobacterium wasabiae
WPP163]
Length = 329
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 60/302 (19%), Positives = 105/302 (34%), Gaps = 67/302 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+S+ +LE +P S++L+ PP+ LQ + D E Y
Sbjct: 18 YIADSLEMLEAVPDSSLNLVMTSPPFALQRKKEYGNHDQ----------------EQYID 61
Query: 84 FTRAWLLACRRVLKPNGTLWV--IGSY---------HNIFRIGTMLQNLNFWILNDIVWR 132
+ + + LK +G+ V GSY +N + M+ + F + D W
Sbjct: 62 WFLKFGELVFKKLKDDGSFVVDFGGSYMKGVPVRSVYNFRVMIRMIDEIGFHLAEDFYWF 121
Query: 133 KSNPMP------NFRGRRFQNAHETLIWASPSPK------------AKGYTFNYDALKAA 174
+ +P N R R +++ T+ W S + + +
Sbjct: 122 NPSKLPSPIEWVNKRKLRVKDSVNTVWWFSKTEWPKSDVTKVLVPYSDRMKKLIEDPNKY 181
Query: 175 NEDVQMRSDWLIPICSGSERL----------------------RNKDGEKLHPTQKPEAL 212
S I G + K G K HP + P L
Sbjct: 182 YSPKMRPSGHDISSSFGKDNGGAIPSNLLQIPNSESNGGYLSGCKKIGIKGHPARFPSKL 241
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ T+PGD+++D F GS T+G++A+KL R ++ E+ +Y+ + R S
Sbjct: 242 PEFFINMLTEPGDLVVDIFGGSNTTGSIAEKLNRKWLSFELSPEYVAASVFRFTSKNTSS 301
Query: 273 NI 274
Sbjct: 302 EK 303
>gi|332884700|gb|EGK04957.1| hypothetical protein HMPREF9456_00710 [Dysgonomonas mossii DSM
22836]
Length = 521
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 16/202 (7%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
+ + ++ ++KII G+++ L+ L + I+ DPPYN G +Y
Sbjct: 20 PYRILEKQYTHNAEGSENKIIHGDNLEALKSLLPEYEGRIKCIYIDPPYNTGNEGWVY-- 77
Query: 61 DHSLVDAVTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ ++ D W + + + + L R+L +G +++ +
Sbjct: 78 NDNVNDPKIKKWLGEVVGKESEDLTRHDKWLCMMYPRLKLLHRLLADDGAIFISIDDNEF 137
Query: 112 FRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + + + +W+ + + HE ++ S D
Sbjct: 138 ANLKLICDEIFGTNGFKSVFIWKSRQIVDSRNQTMISKDHEYILTYGKSESFSLKGRISD 197
Query: 170 ALKAANEDVQMRSDWLIPICSG 191
K +N D R W+ G
Sbjct: 198 KSKYSNPDNDERGAWMSNSILG 219
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK--- 243
+G+ LR E K L+ ++ +T I+LD F GSGT+
Sbjct: 302 YTMNGTRILREIVPESKFNFPKSFELVKTLIEQATDKDSIVLDSFAGSGTTAHAVLNLNK 361
Query: 244 ---LRRSFIGIEMKQDYIDIATKRIAS 267
R FI +EM+ DI +R+
Sbjct: 362 QDGGNRKFILVEMEDYADDITAERVKR 388
>gi|238021173|ref|ZP_04601599.1| hypothetical protein GCWU000324_01071 [Kingella oralis ATCC 51147]
gi|237868153|gb|EEP69159.1| hypothetical protein GCWU000324_01071 [Kingella oralis ATCC 51147]
Length = 629
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/344 (15%), Positives = 109/344 (31%), Gaps = 106/344 (30%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH----- 62
Q+ ++ ++KG+++ +L+ L A +V +I+ DPPYN +G +Y+ D
Sbjct: 85 NRQSENAASQNLLLKGDNLEILKHLKHAYAGAVKMIYIDPPYNTGSDGFVYQDDRRFTPE 144
Query: 63 --SLVDAVTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ + + K +S A+ F L R +L+ +G +++ +
Sbjct: 145 QLARLGGMDLDEACRVLEFTAKKSNSHSAWLTFMYPRLYIARELLREDGVIFISIDDNEQ 204
Query: 112 FRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS-PSPKAKGYTFNY 168
++ + + ++ + R + + A L++A + YT +
Sbjct: 205 AQLKILCDEVFGEENFVSTAIRRAKVGGGSDNKQFATEADYLLVYAKNKNMLNTFYTPHT 264
Query: 169 D--------------------------ALKAANEDVQMRSDWLIPICSGSERLR------ 196
+ + + +ED S SER R
Sbjct: 265 EQDLKRYSETDKEGKFFWDTYSRAGLASDEDEDEDSLYYSITFPDGSIKSERWRRSQERL 324
Query: 197 -------------NKDGEKLHPTQKPEALLSR---------------------------- 215
K+G +H Q+ L R
Sbjct: 325 KKDLDDGEAKFIETKNGWNVHFKQRLPELGKRPRQILFNGFNNALGTEELANLFKQKNIF 384
Query: 216 -----------ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
++ T+ D+ILD F GSGT+ + ++
Sbjct: 385 KYPKYTGFIEFLIEICTQKDDLILDFFAGSGTTAHAVMNINANY 428
>gi|170694682|ref|ZP_02885833.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
gi|170140313|gb|EDT08490.1| DNA methylase N-4/N-6 domain protein [Burkholderia graminis C4D1M]
Length = 661
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 12/194 (6%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ II+G++ L L A + +I+ DPPYN +Y + D W
Sbjct: 73 RNLIIEGDNFDSLRLLRATHAGKIRVIYIDPPYNTGNKDWVY---NDKFVGANDRWR--- 126
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F L R +L +G + V + N R+ ++ + + ++
Sbjct: 127 -HSQWLEFLYQRLTLARDLLTSDGVILVSINDENRSRLELLMDEVFPRRRAGSLVWRTKD 185
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
N +RF + HE ++ + + K N D R DW + ++ L
Sbjct: 186 TGNDLSQRFSHVHEHVLVYANAGFKFNGRATSK-HKFRNPDKDSRGDWSPQPLTANKTLV 244
Query: 197 NKDGEKLHPTQKPE 210
+ +P Q PE
Sbjct: 245 ERP-NTYYPIQNPE 257
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RS 247
++N G K P KP +L+ +L +T PGDI+LD F GSGT+G +L R
Sbjct: 423 EVKNILGSKAFPYPKPISLIKGLLAQATTPGDIVLDFFAGSGTTGQAVLELNAEDGGQRR 482
Query: 248 FIGI-EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
FI + + A V V+ G R +P + E +Q
Sbjct: 483 FILCSSTEATTKEPAKNLCRDVCA--ERLRRVMIGYRDKPGYSVAQGGEFAYLQ------ 534
Query: 307 NAQGNISATVCADGT 321
+A + DG
Sbjct: 535 -LDKIEAADIAFDGK 548
>gi|309751295|gb|ADO81279.1| Type III restriction-modification system methylase (M.HindVIP)
[Haemophilus influenzae R2866]
Length = 667
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/327 (20%), Positives = 100/327 (30%), Gaps = 63/327 (19%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + + ++ IIKGN++ L L V LI+ DPPYN +G Y
Sbjct: 202 KQPVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYND 261
Query: 61 ------------------------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
D + D + D F R +
Sbjct: 262 KFNHSTWLTFMKNRLEIAKTLLADDSVIFVQCDDKEQAYLKILMDDIFKRENFINTIVWR 321
Query: 97 KPNGTLWVIG-----------------SYHNIFRIGTMLQNLNFWILNDIVWR-KSNPMP 138
K G S HNIF ++ + D R
Sbjct: 322 KVKSAKIQSGNLPRVKEYILVYKKSKLSLHNIFLPRNNEKDKKLYRFQDKNGRVYRLSDF 381
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-----DVQMRSDWLIPICSGSE 193
+G+ + P K +T N+ M S
Sbjct: 382 TQKGQGEARYFGENLIEPPKGKHWIWTQEKIDEGMKNDLIVFSKNGMPSVKRFLDEKEGI 441
Query: 194 RLRN-------------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
L + + QKPEAL+ RI+ +T DI+LD GSGT+ AV
Sbjct: 442 PLSDLWEDDFVQIVSSTSSERQDFDGQKPEALIKRIIELTTNESDIVLDYHLGSGTTAAV 501
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
A K+ R +IGIE +A +R+
Sbjct: 502 AHKMNRQYIGIEQMDYIETLAVERLKK 528
>gi|317181087|dbj|BAJ58873.1| putative type III restriction enzyme M protein [Helicobacter pylori
F32]
Length = 601
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 70/355 (19%), Positives = 117/355 (32%), Gaps = 71/355 (20%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG---------------------- 55
+ +IKGN++ L L K V I+ DPPYN +
Sbjct: 165 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEV 224
Query: 56 --QLYRPDHSLVDAVTDS-----------------------WDKFSSFEA----YDAFTR 86
+ D + D+ W +F S + +
Sbjct: 225 AREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVGCISWKQFHSVKNDAANFSKNIE 284
Query: 87 AWLLACRRVLK--------PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
L C+ K L+ + + +++ + + P
Sbjct: 285 YILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPVWAKSGNNFSSYTFLNGKTWSP 344
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------DVQMRSDWLIPICSG 191
G ++ + TL + + N A + +E + +G
Sbjct: 345 -PSGTFWRYSIGTLKDMEQNNRIVFNGKNPMAKRYLSEVAEGRKSSTFWDGSEVGYNLNG 403
Query: 192 SERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
++ +G K+ KPEAL+SRIL ST D++LD F GSGT+ AVA K++R +IG
Sbjct: 404 DAEIKQLFNGNKVFNNPKPEALISRILEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIG 463
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
IE I +R+ V ++ + + L E L QIL
Sbjct: 464 IEQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNLEVKKQIL 518
>gi|306824121|ref|ZP_07457493.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|304552657|gb|EFM40572.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
27679]
Length = 95
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+K N QM+ +GS + + E HPTQKP LL RI++SST+PGD++LDP
Sbjct: 1 MKEMNGGKQMKDV-----WTGSLTPKREKIEGKHPTQKPLYLLERIILSSTEPGDLVLDP 55
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
F GS T+G A+KL R +IGI+ + +YI+++ +R+
Sbjct: 56 FCGSSTTGVAAQKLGRKYIGIDNEPEYIELSKRRLQKD 93
>gi|228924788|ref|ZP_04087951.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228834891|gb|EEM80367.1| DNA methylase N-4/N-6 [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
Length = 301
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 64/304 (21%), Positives = 100/304 (32%), Gaps = 89/304 (29%)
Query: 44 FADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
PPY + V E Y + + +RVL+ +GTLW
Sbjct: 2 VTSPPYWGLRDY-----------GVDGQIGLEEKVEEYVSNLVSVFREVKRVLRDDGTLW 50
Query: 104 VIGSY--------HN---------------------------------------IFRIGT 116
+ N +R+
Sbjct: 51 LNLGDAYAGSGRGRNADGKGNPGNNHFQSVGQVTGIVSVTKSVDGLKPKDLIGLPWRVAF 110
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA-- 174
LQ +++ DIVW K N MP R +HE + S SPK +
Sbjct: 111 ALQQDGWYLRQDIVWNKPNAMPESVRDRPTKSHEYIFLLSKSPKYYYDHESIKEPAVYGQ 170
Query: 175 -------------------NEDVQMRSDWLIPICSGSERLR----------NKDGEKLHP 205
N++ + + R + K ++ H
Sbjct: 171 QDVRGSEGAFGPPQRAKRENKEKGSFNGKYGHEAFRAIRDKRNKRSVWTVSTKPLKEAHF 230
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
PEAL+ +++ I++DPFFGSGT G VA K R+FIGIE+ YI+I+ + +
Sbjct: 231 ATFPEALIEPCILAGAPAEGIVMDPFFGSGTVGRVAAKHNRNFIGIELNPGYIEISDRLL 290
Query: 266 ASVQ 269
++VQ
Sbjct: 291 SNVQ 294
>gi|145639457|ref|ZP_01795062.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae PittII]
gi|145271504|gb|EDK11416.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae PittII]
gi|309751703|gb|ADO81687.1| Probable Type III restriction-modification system enzyme Res
[Haemophilus influenzae R2866]
Length = 548
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 21/202 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---- 63
+ ++ +I+G+++ VL+ L + +I+ DPPYN +G +Y+ D
Sbjct: 8 NQKTENQNSENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRKFTPQ 67
Query: 64 -----------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + K +S A+ F L R +L+ +G +++ +
Sbjct: 68 QLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFISIDDNEQA 127
Query: 113 RIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT-FNYD 169
++ + + + + VW+ N HE + S + K D
Sbjct: 128 QLKILCDEVFGEENFVAEFVWKSRQNKDNRNITGASIDHEYIFCYSKTNLYKALRGAERD 187
Query: 170 ALKAANEDVQMRSDWLIPICSG 191
+ +N D R +W G
Sbjct: 188 TSQYSNPDNDPRGNWASGNMVG 209
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 29/127 (22%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKK----- 243
+G+ L + K K L+ +++ + P D+ILD F GSGT+ +
Sbjct: 293 NGTAELEDLFEAKYFDFPKSIQLIKQLIEQAILNPNDLILDFFAGSGTTAHAVMQLNAED 352
Query: 244 ---LRRSFIGIEM--------------KQDYIDIATKRIASVQPLGNIELTV------LT 280
R FI +++ + DI RI +
Sbjct: 353 EDNGNRKFICVQLPEPTDEKSEAYKAGYKTIFDITKARIEKSAVKIRQDFKETTADLGFK 412
Query: 281 GKRTEPR 287
+TEP
Sbjct: 413 IFKTEPH 419
>gi|330892394|gb|EGH25055.1| DNA methylase N-4/N-6 domain-containing protein [Pseudomonas
syringae pv. mori str. 301020]
Length = 628
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 12/192 (6%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ II+G++ L L A + +I DPPYN +Y D+ D W
Sbjct: 73 NLIIEGDNFDSLRLLKATHAGKIHVILIDPPYNTGNKDWVYNDDYVKK---DDRWR---- 125
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F + R +L P+G + V + N R+ ++ + K+
Sbjct: 126 HSKWLEFMYQRMTLARDLLTPDGVILVCINDENRARLEMLMDEVFPGRRLGAFVWKTRSG 185
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
N RF HE ++ P K D + N D R W G R
Sbjct: 186 SNDEQARFSVDHEYVLVYG-LPDFKFNGETKDFSQYKNPDKDPRGPWKTGDL-GKGHTRI 243
Query: 198 KDGEKLHPTQKP 209
+ +P Q P
Sbjct: 244 ERPNAYYPIQNP 255
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR----- 245
G + G P KP +L+ IL +T+P +LD F GSGT+G L
Sbjct: 400 GEHSVSEILGYNAFPYPKPISLIRNILQQATRPDSTVLDFFAGSGTTGHAVLALNAEDGG 459
Query: 246 -RSFIGIEMK 254
R FI
Sbjct: 460 DRKFILCSSS 469
>gi|319897862|ref|YP_004136059.1| type iii restriction-modification system methyltransferase
[Haemophilus influenzae F3031]
gi|317433368|emb|CBY81748.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae F3031]
Length = 626
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 25/202 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---- 63
ENQNS ++ +I+G+++ VL+ L + +I+ DPPYN +G +Y+ D
Sbjct: 92 ENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRKFTPQ 147
Query: 64 -----------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + K +S A+ F L R +L+ +G +++ +
Sbjct: 148 QLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFISIDDNEQA 207
Query: 113 RIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT-FNYD 169
++ + + + + VW+ N HE + S + K D
Sbjct: 208 QLKILCDEVFGEENFVAEFVWKSRQNKDNRNITGASIDHEYIFCYSKTNLYKALRGAERD 267
Query: 170 ALKAANEDVQMRSDWLIPICSG 191
+ +N D R +W G
Sbjct: 268 TSQYSNPDNDPRGNWASGNMVG 289
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 27/125 (21%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAK------ 242
+G+ L + K K L+ +++ + P D+ILD F GSGT+
Sbjct: 373 NGTAELEDLFEAKYFDFPKSIQLIKQLIEQAILNPNDLILDFFAGSGTTAHAVMQLNAEG 432
Query: 243 KLRRSFIGIEM--------------KQDYIDIATKRIASVQPLGNIELTV------LTGK 282
K R FI +++ + DI RI +
Sbjct: 433 KGNRKFICVQLPEPTNEKSEAYKAGYKTIFDITKARIEKSAVKIRQDFKETTADLGFKIF 492
Query: 283 RTEPR 287
+TEP
Sbjct: 493 KTEPH 497
>gi|77166378|ref|YP_344903.1| site-specific DNA-methyltransferase (adenine-specific)
[Nitrosococcus oceani ATCC 19707]
gi|254435186|ref|ZP_05048693.1| DNA methylase domain protein [Nitrosococcus oceani AFC27]
gi|76884692|gb|ABA59373.1| Site-specific DNA-methyltransferase (adenine-specific)
[Nitrosococcus oceani ATCC 19707]
gi|207088297|gb|EDZ65569.1| DNA methylase domain protein [Nitrosococcus oceani AFC27]
Length = 624
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 27/209 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
S L E + K+ I+G+++ VL+ L V +I+ DPPYN +
Sbjct: 75 STGTLLPCPEESINWDTTKNLFIEGDNLEVLKLLQKSYANKVKMIYIDPPYNTG--KEFI 132
Query: 59 RPDHSLVD---------AVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGT 101
PD + V D KFSS + + L +++L G
Sbjct: 133 YPDKFQENLDTYLKYTGQVDDEGMKFSSNTESTGRKHTNWLSMMYPRLKLAKQLLSQEGV 192
Query: 102 LWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP--- 157
+++ + + + + + + P+ F + H+ ++ +
Sbjct: 193 IFITIDDNEVATLRQVCDEIFGEENFVTSIVWQKKVSPSNDATWFSSDHDHILVYAKNKL 252
Query: 158 -SPKAKGYTFNYDALKAANEDVQMRSDWL 185
K N D R +W
Sbjct: 253 IWRPFKLPMNERQKSNYTNPDNDPRGNWN 281
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 12/134 (8%)
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
R H + + + V R+ WL
Sbjct: 311 WPKKTAVWKYSREVSQKHAEENIIYWGKDGTSNSPRLKKFLSKAKGVVPRTVWLYSDVGH 370
Query: 192 SER----LRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL- 244
++ L + T KP L+ +L ST +I+LD F GS ++ +
Sbjct: 371 TQEATKVLSELIDDIKFDTPKPVRLIEHMLRISTGGDSEEIVLDFFAGSASTAHAILNIN 430
Query: 245 -----RRSFIGIEM 253
R FI +++
Sbjct: 431 ANEGSNRRFIMVQL 444
>gi|312888140|ref|ZP_07747723.1| DNA methylase N-4/N-6 domain protein [Mucilaginibacter paludis DSM
18603]
gi|311299407|gb|EFQ76493.1| DNA methylase N-4/N-6 domain protein [Mucilaginibacter paludis DSM
18603]
Length = 385
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/292 (20%), Positives = 101/292 (34%), Gaps = 27/292 (9%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
K I+ G + +EKL S+ L+ PPY +++ + + + + +F
Sbjct: 19 KHSILTGAANKEMEKLNDHSISLVVTSPPYPMIEMWDDIMAAQNQSIAKEQLKGNGDIAF 78
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNFWIL 126
E + R L P G + Y+N RI + L F +
Sbjct: 79 ELMHQELDKIWIQVERTLSPGGIACINIGDATRTINEHFSLYNNHSRIVSAFIKLGFNNM 138
Query: 127 NDIVWRKSNPMPN--------FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+I+WRK PN G HE ++ K T L+ +
Sbjct: 139 PNIIWRKQTNAPNKFMGSGMLPAGAYVTLEHEWILIFRKGGKRNFKTDAEKQLRRESAFF 198
Query: 179 QMRSDWLIPICSGSERLRNK---DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ + + + + P L R++ + GD +LDPF G+G
Sbjct: 199 WEERNVWFSDVWDLKGAKQRIESPESRNRSAAYPFELPYRLINMYSVKGDTVLDPFLGTG 258
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
T+ A R+ IGIE+ +I I + I + P+ L R E
Sbjct: 259 TTTLAAIASERNSIGIEIDPSFIPIVNENIINATPVK---LNRHIQNRIEQH 307
>gi|332346700|gb|AEE60031.1| putative DNA methylase protein [Escherichia coli UMNK88]
Length = 217
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 86/244 (35%), Gaps = 44/244 (18%)
Query: 34 KLPAKSVDL---IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
KL ++V L DPPY + D + + + D + +
Sbjct: 2 KLKQQTVRLSRRTLTDPPY---------------LVGFRDRQGRTITGDKTDEWLQPASN 46
Query: 91 ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
RVLK + + ++ I R + F ++ +V+ K+ + HE
Sbjct: 47 EMYRVLKKDALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNY---TSKSAYVAYRHE 103
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ A D L G + HPT+KP
Sbjct: 104 CAYILAKGRPALPQKPLPDVLGW-----------------------KYSGNRHHPTEKPV 140
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
L ++ + P I+LDPF GSG++ A + R +IGIE+ + Y +R+A+VQ
Sbjct: 141 TSLQPLIETFIHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQR 200
Query: 271 LGNI 274
Sbjct: 201 AMQQ 204
>gi|192289131|ref|YP_001989736.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
TIE-1]
gi|192282880|gb|ACE99260.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 238
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 84/255 (32%), Gaps = 42/255 (16%)
Query: 22 KIIKGNSISVLEKLPAKSV-DLIFADPPYNLQLN--------GQLYRPDHSLVDAVTDSW 72
+ G+++ ++ L V D + DPPY+ N + Y +
Sbjct: 12 TVYLGDALEIMPTL--GPVGD-VLTDPPYSSGGNVRDLAKSTNEKYLTGPAKYPEFQGDT 68
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
SF A++ W+ R + +P L + + +Q + + W
Sbjct: 69 RDQRSF---LAWSTLWMGRARALTRPGAMLVCFSDWRQLPVTSDAVQCAGWVWRGIVPWD 125
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K+ +GR A L + P+ G
Sbjct: 126 KTEGSRPQKGRYRVQAEYALW-----------------------GTNGARPPVGPVAPGV 162
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
R+ + K H KP L+ L ILDPF GSGT G + ++GIE
Sbjct: 163 FRM-SVPRIKHHVAGKPVDLM---LGLMGVLDGPILDPFMGSGTVGIACLQRGLPYVGIE 218
Query: 253 MKQDYIDIATKRIAS 267
+ + Y +IA R+
Sbjct: 219 VDETYFEIACGRLEE 233
>gi|193214766|ref|YP_001995965.1| DNA binding domain-containing protein [Chloroherpeton thalassium
ATCC 35110]
gi|193088243|gb|ACF13518.1| DNA binding domain protein, excisionase family [Chloroherpeton
thalassium ATCC 35110]
Length = 352
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 82/259 (31%), Gaps = 37/259 (14%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ +S S LE+L S+ L+ PPY + ++ + +
Sbjct: 86 LFNKDS-SSLEELADDSIHLMVTSPPYFNAKLY--------AAEPISGDLGDIHDIDDWF 136
Query: 83 AFTRAWLLACRRVLKPNGTLWVI----------GSYHNIFRIGTMLQNLN---------- 122
+ RVL+P ++ G Y + +G +
Sbjct: 137 SKIGHVWQEVFRVLQPGRKAFINIMNLPISLEDGKYRTLNLVGRTIDVCEAIGFTFKRDI 196
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS-----PKAKGYTFNYDALKAANED 177
W + V P G N HE ++ K T + +++
Sbjct: 197 VWHKTNAVRAHFGTYPYPGGILINNMHEFILEFDKPERRGARKYAHVTKDQREASKLDKE 256
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ E + H P L RI+ + + G+ ILDPF GSGT+
Sbjct: 257 FWLSIKKSDVWVMAPE---GSGNNRSHVAPFPYELPMRIIKAFSYVGERILDPFVGSGTT 313
Query: 238 GAVAKKLRRSFIGIEMKQD 256
A LRR+ G E+ +
Sbjct: 314 LCAAADLRRNSFGYEINPE 332
>gi|242240461|ref|YP_002988642.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
dadantii Ech703]
gi|242132518|gb|ACS86820.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
dadantii Ech703]
Length = 660
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 64/202 (31%), Gaps = 24/202 (11%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD-- 66
N ++ I+G+++ VL+ L V LI+ DPPYN + PD+
Sbjct: 124 NSKEWDTTRNVFIEGDNLEVLKILQRHYHNKVKLIYIDPPYNTGKDF--VYPDNYKEGLD 181
Query: 67 -------AVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
V + K S+ + L R +L +G +++ +
Sbjct: 182 SYLEWTRQVNEEGKKVSTNSETEGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDNEQ 241
Query: 112 FRIGTMLQNLNFWIL--NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + + ++W+ HE ++ S + A D
Sbjct: 242 ENLRKLCNEVFGEGRFIAQLIWKSRVSEDTRATTGVSTDHEYILVYSKTENAVFRGTEKD 301
Query: 170 ALKAANEDVQMRSDWLIPICSG 191
K N D R W +G
Sbjct: 302 KTKFNNPDNDPRGPWRSADLTG 323
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 178 VQMRSDWLIPI-CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
M S G+ G + KP +L+ + DIILD F GS T
Sbjct: 393 KNMSSVITDSNTAVGTRETNGLIGNGVFSFPKPVSLIFSLAEQIMSDEDIILDFFAGSAT 452
Query: 237 SGAVAKKLR------RSFIGIEMKQDYIDIATKRIASVQPLGN 273
+ +L R FI +++ + + + R A + +
Sbjct: 453 TAHAVMQLNAEDNGKRRFIMVQLPEPTPEASEARKAGFATIAD 495
>gi|74317509|ref|YP_315249.1| adenine specific DNA-methyltransferase [Thiobacillus denitrificans
ATCC 25259]
gi|74057004|gb|AAZ97444.1| adenine specific DNA-methyltransferase [Thiobacillus denitrificans
ATCC 25259]
Length = 779
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Query: 189 CSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R+ E+L +PTQKPEALL RI+ +S+ GD++ D F GSGT+ AVA+KL R
Sbjct: 357 WDEVNRISPTSSERLDYPTQKPEALLERIIKASSNEGDLVADFFCGSGTTAAVAEKLGRK 416
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
+I ++ + + KR+ VQ R + + + G L
Sbjct: 417 WIATDLGKFGVHTTRKRMIGVQRQLKDS---GKPFRAFEVLNLGRYERQAYLNVGGRL-- 471
Query: 308 AQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
G+ + A + ++ E G +F++ + G L I
Sbjct: 472 -NGHQKEQLLAQKEREFRDLILRAYK----AQPLE---GESFFHGKNAGRLVVI 517
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 72/214 (33%), Gaps = 23/214 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK----SV------DLIFADPPYNLQLNGQL 57
+ + W +K+I G++ +L L + + LI+ DPP+++ + +
Sbjct: 83 LFDTRGRQLKGWTNKLIWGDNKLILSSLKSGALRQQIEDAGGLKLIYIDPPFDVGADFSM 142
Query: 58 ----------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
P+ A D+W + + ++ + L+ R +L +G+++V
Sbjct: 143 DIEIGGETFHKEPNLLEQIAYRDTWGRGAD--SFISMVYERLILMRDLLADDGSIYVHMG 200
Query: 108 YHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + + + + K + G+ + T K++ +
Sbjct: 201 KTVAHYVRLACEEVFGSANIVNEITWKRSHAHGDTGQGASHFGRTTETILLFRKSEKGIW 260
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
N ++ + + RL DG
Sbjct: 261 NPQHKPYTDDVLARDYKYTEEKTGERYRLMPVDG 294
>gi|295101251|emb|CBK98796.1| Adenine specific DNA methylase Mod [Faecalibacterium prausnitzii
L2-6]
Length = 529
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 11/220 (5%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ +K S N ++ II+G+++ L+ L V I+ DPPYN G +
Sbjct: 24 LERKYSFDENGQHGEDNGSENMIIRGDNLEALKALLPRYEGRVKCIYIDPPYNTGNEGWV 83
Query: 58 YRPDHSL-------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
Y + + + V + + + + L +++L +G +++
Sbjct: 84 YNDNVNDPKIKRWLGEVVGKEGEDLTRHDKWLCMMYPRLKLLQKLLAEDGAIFISIDDAE 143
Query: 111 IFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
F + ++ V + N P + F H+ ++ +
Sbjct: 144 FFNLRSICNEVFGEQNFIATVIWRKNYAPKSTAKHFSEDHDYILVFGKNADMWTPHKMPR 203
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
K +D + RN + + P
Sbjct: 204 TEKQNKAYKNPDNDPRGLWRPNNLAARNYYSKGTYSITCP 243
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + ++ W ++ + + GE T KP L+ RIL ++ IILD
Sbjct: 294 DGIVPQTLWSYEEVGHTQDAKKEIKSIFSGEMPFDTPKPYHLIERILQIASDSDSIILDS 353
Query: 231 FFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIAS 267
F GSGT+ + R FI +EM I +R+
Sbjct: 354 FAGSGTTAHAVLNMNKADGGHRKFILVEMMDYADSITAERVKR 396
>gi|257440814|ref|ZP_05616569.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
gi|257196788|gb|EEU95072.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
Length = 184
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 25/185 (13%)
Query: 89 LLACRRVLKPN----GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
L RVLK G L + ++ F + ++++W K
Sbjct: 20 LYDAFRVLKSGEAGHGGLICFTRWDVEQTFIDAMKIAGFNVKSEVIWDKVYHGMGDTKAA 79
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
F +HE +++A + + D + + + +H
Sbjct: 80 FAPSHENIVFAIKGKYSFPGSRPKDLVTFP---------------------KINSSKMVH 118
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PT+KP LL+ ++ S TKPGD+ILDPF GSG++ AKK R FIGIE+ DY A +R
Sbjct: 119 PTEKPVGLLANLISSVTKPGDLILDPFAGSGSTLVAAKKTGRRFIGIELDDDYFVTAQRR 178
Query: 265 IASVQ 269
I V+
Sbjct: 179 IEEVR 183
>gi|227824282|ref|ZP_03989114.1| type III restriction system methyltransferase [Acidaminococcus sp.
D21]
gi|226904781|gb|EEH90699.1| type III restriction system methyltransferase [Acidaminococcus sp.
D21]
Length = 629
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/216 (12%), Positives = 67/216 (31%), Gaps = 23/216 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
+ ++ I+G+++ L+ L V +I+ DPPYN + +Y D S+
Sbjct: 96 IDTENIYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGSDAFVYDDDSSISGEEFAERS 155
Query: 65 ----------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
D T++ + L + +L +G +++ + +
Sbjct: 156 GQRDDDGNLLFDMRTNNESNGRFHTDWLNMLYPRLRIAKDLLSDDGVIFISIDDYEQENL 215
Query: 115 GTML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+ + + + P + N+H+ ++ + +A
Sbjct: 216 KKICSEIFGAENFIAQLVWERAFAPKNDAKYVSNSHDYVLMFAKKIDNFKIGRLPRTEEA 275
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D SG ++ +P P
Sbjct: 276 NERYSNPDNDPRGVWQSGDLSVKTYSPSGDYPITTP 311
>gi|281418289|ref|ZP_06249309.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
JW20]
gi|281409691|gb|EFB39949.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
JW20]
Length = 432
Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/278 (18%), Positives = 88/278 (31%), Gaps = 38/278 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S EKL + PPY + + A + W F +
Sbjct: 171 HRLMCGDSTKDEDFEKLMEGCHAQMAVTSPPYGVGKEYE---------KAGIEPW--FET 219
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ L G L+ GS + + ++ L+ +
Sbjct: 220 VRPVIRNLCRYADIVCWNL---GDLYATGSQFIEPTSVYSVNMFLDNGYRPIWIRIWKKQ 276
Query: 137 MPNF-------RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
NF + +E + S + + Y +A S +
Sbjct: 277 GQNFGVGPYHLVSNKPVQQYEYISAFSNKGEVEEYNDQEYVWLSAFAG---HSYKFVKRL 333
Query: 190 SGSERLR----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ ER + K HP P L R + + G I+L+PF GSGT+
Sbjct: 334 TKEERKKWGYAGIWEMTTVRANKEHPAMFPVELPWRCIKMHSDNGGIVLEPFSGSGTTII 393
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
A++ R +E+ Y D+A KR I+L
Sbjct: 394 AAEQTERKCYAMELSPVYCDLAVKRWEEFTGEKAIKLE 431
>gi|310642922|ref|YP_003947680.1| adenine methyltransferase, putative [Paenibacillus polymyxa SC2]
gi|309247872|gb|ADO57439.1| Adenine methyltransferase, putative [Paenibacillus polymyxa SC2]
Length = 410
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 91/235 (38%), Gaps = 11/235 (4%)
Query: 20 KDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ + L + L+ DPPYN+ + + D + +
Sbjct: 176 RHRLVCGDATNPDDVTLLMDGANAALVVTDPPYNVAVE---SVSERLAADGRSSIMNDNM 232
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
E + F A V++P ++V + + + VW K+
Sbjct: 233 PAEDFAGFLYAVFSNYAVVMQPTAAIYVFHPSSYHREFEDAMNAASIVVRTQCVWVKNAA 292
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +++ HE + +A KA + + + + + E R
Sbjct: 293 TFGWA--QYRYKHEPVFYAHLKGKAPAWYGDRTQTTVWKAGLPVEDPLPETVW---EVSR 347
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ +HPTQKP LL+ + +S++ GD ++D F GSG++ +++ R+
Sbjct: 348 GDVNKYVHPTQKPLDLLAIPIRNSSQRGDEVVDFFGGSGSTLMTCEQMDRTCRTW 402
>gi|291546457|emb|CBL19565.1| DNA modification methylase [Ruminococcus sp. SR1/5]
Length = 548
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 110/333 (33%), Gaps = 52/333 (15%)
Query: 21 DKIIKGNSI--SVLEKLP-AKSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWDK 74
++I G+S L+KL + + DPPY + L+G R + + + D+
Sbjct: 206 HRLICGDSTKPETLQKLLGDELAQCVNTDPPYGISLDGGGGNGKRQKQQIENNGMIANDE 265
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ + + KP+ ++ + + ++W K+
Sbjct: 266 LTDDDLLGKLLIPAFKNAVKYSKPDAAFYIYHATDTRRDFEDAMTAAGLLEKQYLIWLKN 325
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYT----FNYDALKAANEDVQMR-----SDWL 185
N N G + E + +A + + N +D M +
Sbjct: 326 NH--NLSGTDYLRDFEPMFYAEKAGHTAKWCGDRSNNTCWKITLRDDAGMATTLSGGIVV 383
Query: 186 IPICSGSERLRNK--DGEKL--------------------------------HPTQKPEA 211
G + +K G+K+ HPTQKP
Sbjct: 384 TDGAGGKAFISDKVPKGKKIRYLRLQEDKSVFLYPEDKQGAVWEVARDTATFHPTQKPVE 443
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L +R +++S+ PGDIILD F GSG + A+ R +E+ Y D +R S
Sbjct: 444 LATRAILNSSDPGDIILDLFGGSGFTLIGAEMTERQARLVELSPTYCDGIIRRYVSYTGN 503
Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
+ GK + ++ + P +
Sbjct: 504 AGVT-CTRDGKEYAYVQLNDENIKANMPDPEET 535
>gi|302343976|ref|YP_003808505.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
gi|301640589|gb|ADK85911.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
Length = 395
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 43/253 (16%)
Query: 20 KDKIIKGNSISV--LEKLPAKSV--DLIFADPPYNLQLN----GQLYRPDHSLVDAVTDS 71
+ +++ G+S S +++L A V L+ DPPY ++ + + + + +
Sbjct: 163 RHRLMCGDSTSADDVDRLLAG-VRPHLMVTDPPYGVEYDPAWRNEALSGQKTKRTGMVLN 221
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D+ EA+ F P +V + + L F I + I+W
Sbjct: 222 DDRADWREAWTLF-------------PGDVAYVWHGALHAATVAESLVACGFGIRSQIIW 268
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
K + + + Y A N D + + W IP
Sbjct: 269 AKERLVLSR------------GHYHWMHEPCWYAVKDKAHW--NGDRKQVTIWNIPS--- 311
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ +D + +H TQKP + R + +++ PG + +PF GSGT+ A+ R+ + +
Sbjct: 312 ----KGQDADTIHGTQKPVECMKRPMENNSSPGQAVYEPFSGSGTTIIAAEITGRACLAM 367
Query: 252 EMKQDYIDIATKR 264
E+ Y+D+A KR
Sbjct: 368 ELNPAYVDVAVKR 380
>gi|255020318|ref|ZP_05292386.1| ParB domain protein nuclease [Acidithiobacillus caldus ATCC 51756]
gi|254970238|gb|EET27732.1| ParB domain protein nuclease [Acidithiobacillus caldus ATCC 51756]
Length = 510
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/295 (16%), Positives = 91/295 (30%), Gaps = 55/295 (18%)
Query: 20 KDKIIKGNSIS--VLEKLPA-KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++I +S +E+L A + L+F PPY Q N
Sbjct: 181 EHRLICADSADSAAIERLMAGERAALLFTSPPYANQRNYTTG------------------ 222
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVI-------GSYHNIFR-IGTMLQNLNFWILND 128
+DA A +++ +G + V G + + ++ +
Sbjct: 223 GIADWDALMHGVFAAAMPIMRADGQMLVNLGLVHRDGEWQPYWDGWIEWMRAQGWRRFGW 282
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWA----SPSPKAKGYTFNYDALK------------ 172
VW + +P R HE + K +
Sbjct: 283 YVWDQGVTVPGDWVGRLAPRHEFIFHFNREARKPNKIVPCKWAGQETHLRADGSSTAMRG 342
Query: 173 -------AANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTK 222
+ + + + R R +K+ E HP P L ++ + T
Sbjct: 343 KDGKVGAWCHAGLPTQDYRIPDSVISITRQRGPIDKEREIDHPAVFPIGLPQFVMEAYTN 402
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
GD++ +PF GSGT+ + R E+ +Y+D+A R P L
Sbjct: 403 EGDVVFEPFSGSGTTILAGEACGRRVRASELAPEYVDVAVIRWIKNHPDQTPVLE 457
>gi|119511905|ref|ZP_01631004.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
gi|119463473|gb|EAW44411.1| DNA methylase N-4/N-6 [Nodularia spumigena CCY9414]
Length = 301
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 52/292 (17%), Positives = 96/292 (32%), Gaps = 64/292 (21%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+S+ +++ L S++LI PP+ L + A + + + Y
Sbjct: 26 YLGDSLKLIKSLDQNSINLILTSPPFAL-----------TRQKAYGNE-----TADKYIE 69
Query: 84 FTRAWLLACRRVLKPNGTLWV--------------IGSYHNIFRIGTMLQNLNFWILNDI 129
+ + +RVL NG+ + I Y + R+ +
Sbjct: 70 WFLPFAYEFKRVLAENGSFVLDLGGAYLRGNPVRSIYQYELLVRLCKEVGFFLAQEFYHY 129
Query: 130 ------------------------VWRKSNPMPNFRG------RRFQNAHETL-IWASPS 158
V + PN + + + + + L +
Sbjct: 130 NPARLPTPAEWVTIRRIRVKDSVNVVWWLSKTPNPKADNRKVLKPYSQSMKQLLKNGYKA 189
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE---RLRNKDGEKLHPTQKPEALLSR 215
D + N+ + I + R +G K HP + P
Sbjct: 190 KIRPSGHDISDKFQKDNQGAIPPNLLEIANTESNSAYLRRCKAEGMKPHPARFPSGFAEF 249
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ T GD++LDPF GS T+G VA+ +R +I E+ +DY+ + R A
Sbjct: 250 FIKFLTDEGDMVLDPFAGSNTTGFVAQTWQRRWISFELNEDYVKGSRYRFAQ 301
>gi|260576703|ref|ZP_05844689.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
gi|259021070|gb|EEW24380.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
Length = 454
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 43/272 (15%)
Query: 20 KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ ++ G++ V + + L+F PPY Q + + + V D
Sbjct: 173 RHRLCCGDATDPAAVARLMQGEQATLMFTSPPYAQQRDY------GAAKEKVGD------ 220
Query: 77 SFEAYDAFTRAWLLAC-----RRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIV 130
+DA + +VL G + + + ++ + V
Sbjct: 221 ----WDALMQGVFTVAPVAGDAQVLVNLGLVHRDSEWQPYWEGWVEWMRGSGWRRFGWYV 276
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-------------- 176
W + +P R +HE + + +P+ T
Sbjct: 277 WDQGPGLPGDWNGRLAPSHEFIFHFNRAPRKPHKTVPSKHAGETLGGGGLRGADGTVHAK 336
Query: 177 ---DVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFF 232
++S + R + G HP P AL+ +L + + PGD+I +PF
Sbjct: 337 TGTGNAIQSHRIPDSVFRIMRHKGGLGAAGSHPAVFPVALVEAVLTAFSDPGDLIFEPFC 396
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
GSGT A++ R +E+ Y D+A +R
Sbjct: 397 GSGTQIVAAERAGRRCFAMELDPVYCDVAVRR 428
>gi|59800979|ref|YP_207691.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae FA 1090]
gi|240080430|ref|ZP_04724973.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae FA19]
gi|240118256|ref|ZP_04732318.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae PID1]
gi|240125994|ref|ZP_04738880.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae SK-92-679]
gi|59717874|gb|AAW89279.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae FA 1090]
Length = 687
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 127 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 186
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 187 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 246
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 247 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 306
Query: 181 RSDWLIP 187
R
Sbjct: 307 RPWRTHD 313
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 435 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 494
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 495 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 540
>gi|268596572|ref|ZP_06130739.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268603965|ref|ZP_06138132.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268684586|ref|ZP_06151448.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268550360|gb|EEZ45379.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268588096|gb|EEZ52772.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268624870|gb|EEZ57270.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
Length = 686
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 126 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 185
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 186 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 245
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 246 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 305
Query: 181 RSDWLIP 187
R
Sbjct: 306 RPWRTHD 312
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 434 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 493
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 494 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 539
>gi|293398839|ref|ZP_06643004.1| type III restriction enzyme [Neisseria gonorrhoeae F62]
gi|291610253|gb|EFF39363.1| type III restriction enzyme [Neisseria gonorrhoeae F62]
Length = 682
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 122 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 181
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 182 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 241
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 242 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 301
Query: 181 RSDWLIP 187
R
Sbjct: 302 RPWRTHD 308
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 430 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 489
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 490 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 535
>gi|317164509|gb|ADV08050.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae TCDC-NG08107]
Length = 677
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 117 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 176
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 177 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 236
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 237 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 296
Query: 181 RSDWLIP 187
R
Sbjct: 297 RPWRTHD 303
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 425 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 484
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 485 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 530
>gi|167040461|ref|YP_001663446.1| adenine-specific DNA-methyltransferase [Thermoanaerobacter sp.
X514]
gi|300914512|ref|ZP_07131828.1| Site-specific DNA-methyltransferase (adenine-specific)
[Thermoanaerobacter sp. X561]
gi|307724252|ref|YP_003904003.1| adenine-specific DNA-methyltransferase [Thermoanaerobacter sp.
X513]
gi|166854701|gb|ABY93110.1| Site-specific DNA-methyltransferase (adenine-specific)
[Thermoanaerobacter sp. X514]
gi|300889447|gb|EFK84593.1| Site-specific DNA-methyltransferase (adenine-specific)
[Thermoanaerobacter sp. X561]
gi|307581313|gb|ADN54712.1| Site-specific DNA-methyltransferase (adenine-specific)
[Thermoanaerobacter sp. X513]
Length = 632
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/219 (12%), Positives = 70/219 (31%), Gaps = 21/219 (9%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ L + +I+ DPPYN + +Y+ D +
Sbjct: 81 EESKNPDTTENLYIEGDNLEVLKLLRNSYYGKIKMIYIDPPYNTGNDF-IYKDDFKKLKE 139
Query: 68 VTDSWDKFSS----------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+D + + L + +L +G +++ + +
Sbjct: 140 ESDKEEGELDENGERLIKNQRSSARFHSNWLNMMYPRLKVAKDLLSDDGVIFISIDDNEV 199
Query: 112 FRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + + + F +H+ +I + + + T
Sbjct: 200 ANLRKICDEIFGEENFIATIIWEKKYGIQNDAKWFSTSHDYIIAVAKNKEVFRPTLLPRT 259
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
K +D P S + + + ++ P
Sbjct: 260 DKQNARYKNPDNDPRGPWISDNLSVGRVTEKDIYEIITP 298
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+ KP L+ R + TK I+LD F GS T+ +L R FI +++
Sbjct: 379 IFDYPKPVDLVKRCIHIGTKHDSIVLDFFSGSATTAHAVMELNAEDGGKRKFIMVQL 435
>gi|259649346|dbj|BAI41508.1| DNA methylase [Lactobacillus rhamnosus GG]
Length = 643
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/253 (17%), Positives = 88/253 (34%), Gaps = 31/253 (12%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-----R 59
+N+N K+ G+++ VL L +D+I+ DPPYN +G +Y
Sbjct: 82 DEQQNKNEGKNSKNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEY 141
Query: 60 PDHSLVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D L D+ S A+ F L+ + +L +G ++V +
Sbjct: 142 SDDQLERMFDIDDDQVERLKSIQGKSSHSAWLTFMLPRLILAKGLLSDSGVIYVSIDDNE 201
Query: 111 IFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
++ + ++ L D++W+ + N + + TL +A K +
Sbjct: 202 QAQLKLLCDDIFGEINFLADVIWKHTQQSKNDEPFFARMYNHTLAYAKNINKLNPFFLKR 261
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRN-----------KDGEKLHPTQKPEALLSRIL 217
+ N +D +G R N +G+ + P + +
Sbjct: 262 TSKDNINY-SNPDNDSNGAWRAGDVRSPNLRATLRYNITAPNGKTIFPPKNGWRWSKDTI 320
Query: 218 VSSTKPGDIILDP 230
K G+++ P
Sbjct: 321 NEKIKSGEVVFKP 333
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 13/134 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG T KP L+ R L +LD F GS T+ +L +
Sbjct: 376 DGVSPFGTPKPVELIKRFLELQNDDDATVLDFFAGSSTTAEAVMQLN------------V 423
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ R + L + + P E G ++ + +
Sbjct: 424 EDGGHRKFIMAQLPEKTYHINKNGKEVPTKGGKAAYESGFKSIDEVSRERIRRAAKKIRE 483
Query: 319 DGTLIS-GTELGSI 331
D L GS
Sbjct: 484 DNELTLPEDFDGSF 497
>gi|268611119|ref|ZP_06144846.1| Type III restriction-modification system methyltransferase
[Ruminococcus flavefaciens FD-1]
Length = 625
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 23/206 (11%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
++ I+G+++ VL+ L V +I+ DPPYN + + D
Sbjct: 93 DFDNTENLYIEGDNLDVLKLLQETYLGKVKMIYIDPPYNTGNDFVYNDDFAENTEDYLDR 152
Query: 72 WDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+F + L + +L +G +++ + I +
Sbjct: 153 SGQFDEEGNRLVLNTESNGRFHTDWLNMIYPRLRLAKDLLTDDGVIFISIDENEIQNMRK 212
Query: 117 MLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG----YTFNYDAL 171
+ + + P + R F N +E ++ + +
Sbjct: 213 ICDEIYGETNFISQLGWQKVYSPKNQARYFSNDYEFILCYCRNIEFFKLGMLPRTAEMNA 272
Query: 172 KAANEDVQMRSDWLIPICSGSERLRN 197
+ N D R DW C G+ +N
Sbjct: 273 RYKNPDNDPRGDWKPGDCVGNGVRKN 298
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+ T KP L+ + + + DIILD F GS T+ +L R F+ +++
Sbjct: 388 KVPFDTPKPVKLIKMLSILGSGEDDIILDFFAGSATTAQSILELNAEESTHRKFVLVQL 446
>gi|86146749|ref|ZP_01065069.1| Site-specific DNA-methyltransferase (adenine-specific) [Vibrio sp.
MED222]
gi|85835399|gb|EAQ53537.1| Site-specific DNA-methyltransferase (adenine-specific) [Vibrio sp.
MED222]
Length = 611
Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/209 (11%), Positives = 62/209 (29%), Gaps = 19/209 (9%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ I+ +++ VL+ L KS+ LI+ DPPYN + H+ ++ +
Sbjct: 97 ENIFIEADNLEVLKLLQKSYHKSIKLIYIDPPYNTGKDFVYKDNFHNNLNNYFQQTGQLD 156
Query: 77 S---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-N 120
+ + L R +L +G +++ + +
Sbjct: 157 ESGRKLSTNSDTSGRYHSDWLSMMYPRLKLARNLLADDGAIFISIDDGEQSNLKQICDEI 216
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + P + + H+ ++ + + + K
Sbjct: 217 FGEDNFVNNIIWQKKYSPQNDAKWLSDNHDFILCYAKNKELWRPNLLARTEKQNTAYKNP 276
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D + ++ + P
Sbjct: 277 DNDPRGVWKATDLSVKTYASNNDYEITTP 305
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM- 253
+++ T KP +L+SRIL I+LD F GSGT+ + R FI +++
Sbjct: 386 KEVFDTPKPVSLISRILDIGADKDSIVLDFFAGSGTTAHAVMEKNITDEGTRRFITVQLP 445
Query: 254 ------KQDYI-DIATKRIAS 267
+YI D +RI
Sbjct: 446 EPTGKKDFEYISDFTYERIHR 466
>gi|240121438|ref|ZP_04734400.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae PID24-1]
Length = 671
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 111 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 170
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 171 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 230
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 231 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 290
Query: 181 RSDWLIP 187
R
Sbjct: 291 RPWRTHD 297
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 419 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 478
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 479 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 524
>gi|297571356|ref|YP_003697130.1| Site-specific DNA-methyltransferase (adenine-specific)
[Arcanobacterium haemolyticum DSM 20595]
gi|296931703|gb|ADH92511.1| Site-specific DNA-methyltransferase (adenine-specific)
[Arcanobacterium haemolyticum DSM 20595]
Length = 626
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 22/223 (9%)
Query: 8 AINENQNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD 61
+ ++ + +W ++ I+G+++ VL+ L + +I+ DPPYN +
Sbjct: 77 TLMPDKENSVDWDATQNVFIEGDNLEVLKVLQKHYYGQIKMIYIDPPYNTGNDFVYADNF 136
Query: 62 HSLVDAVTDSWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ + + + L R +L +G + V
Sbjct: 137 TDSIGNYLEITGQADGGGRLSTNSESAGRFHSNWLNMMYPRLKLARSLLAEDGAIAVSID 196
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ R+ ML + + P +RF + H+ ++ S K
Sbjct: 197 DDELPRLRMMLDEIFGASNFYACICWQKKYSPANDAKRFSDMHDFILVYQRSDK-FKRGL 255
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ D +G +R +P Q P
Sbjct: 256 FPRTEENNKPYRYDDGDGRGAYRTGDLSVRTYSAANDYPIQNP 298
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSST--KPGDIIL 228
+ + W ++ R + D + T KP LL R+L T + D++L
Sbjct: 349 QGTVPTTWWSHEFAGHNDEARKEIRALFDTTAVFDTPKPTRLLRRLLQVCTSSETEDVVL 408
Query: 229 DPFFGSGTSGAVAKKL------RRSFIGIEM 253
D F GSGT+ R I +++
Sbjct: 409 DFFAGSGTTAHAVMAQNIEDGGNRRCISVQL 439
>gi|254671412|emb|CBA08903.1| Adenine specific DNA methylase Mod [Neisseria meningitidis
alpha153]
Length = 487
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 38 NLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 97
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 98 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 157
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 158 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 217
Query: 181 RSDWLIP 187
R
Sbjct: 218 RPWRTHD 224
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 346 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 405
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 406 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 451
>gi|240013868|ref|ZP_04720781.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae DGI18]
Length = 656
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 96 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 155
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 156 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 215
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 216 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 275
Query: 181 RSDWLIP 187
R
Sbjct: 276 RPWRTHD 282
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 404 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 463
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 464 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 509
>gi|134298388|ref|YP_001111884.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134051088|gb|ABO49059.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
MI-1]
Length = 664
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 18/176 (10%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--- 55
S L + E + ++ II+G+++ VL+ L V +I+ DPPYN
Sbjct: 73 SHGTLLPVPEESVNFDTTENLIIEGDNLEVLKLLQKSYHGKVKMIYIDPPYNTGNEFIYP 132
Query: 56 ------------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
+ D + T++ + + L R +L+ +G ++
Sbjct: 133 DNFKEGLEDYLRYSGQVDGDGIKLSTNTETEGRFHSKWLNMMYPRLFLARNLLREDGVIF 192
Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
V + + + +++ + + + + + HE ++ + +
Sbjct: 193 VSIDDNEVKNLRSIMDEIFGEENFVSQFIWNTEGHTDNQFQVKVNHEYIVLYAKNQ 248
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEM 253
L KP+ LL ++ + G+I+LD F GSGT+ R FI +++
Sbjct: 428 LFQYPKPKELLQYLIKIGSAEGEIVLDFFAGSGTTAHAVLDLNAQDNGNRKFILVQL 484
>gi|330507788|ref|YP_004384216.1| DNA methylase [Methanosaeta concilii GP-6]
gi|328928596|gb|AEB68398.1| DNA methylase [Methanosaeta concilii GP-6]
Length = 312
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 89/272 (32%), Gaps = 30/272 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD-HSLVDAVTDSWDKF-----SS 77
+S+ V++ +P SV+LI PPY L + D ++ V D D+F
Sbjct: 36 YLADSLEVMKNMPESSVNLIVTSPPYALVYKKEYGNVDANAYVKWFMDFADQFLRVLTED 95
Query: 78 FEAYDAFTRAWLL----------ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
+W L L ++N ++ + + +
Sbjct: 96 GSLVINIGGSWNRGKPTRSTYQFELIIELAKKFHLAQEFYWYNPAKLPAPAEWVTVRRIR 155
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-----------KAKGYTFNYDALKAANE 176
+ + + + L S K + N+
Sbjct: 156 VKDSVELVLWLSKSPFPKADNRKILQPYSKDMQRLIERGYVAKKRPSGHNITSKFQRDNK 215
Query: 177 DVQMRSDWLIPICSGSERL---RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ + + + K HP + P+ L + T GD+++DPF G
Sbjct: 216 GAIPPNLLQVGNNDANSPYLQKCKESNMKPHPARFPKELPQLFIDFLTDQGDVVMDPFCG 275
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
S +G VA+ +R +IGIE +DY+ + R
Sbjct: 276 SNMTGIVAETRKRRWIGIESIEDYLKASEFRF 307
>gi|302344012|ref|YP_003808541.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
gi|301640625|gb|ADK85947.1| ParB domain protein nuclease [Desulfarculus baarsii DSM 2075]
Length = 399
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 98/253 (38%), Gaps = 43/253 (16%)
Query: 20 KDKIIKGNSI--SVLEKLPAKSV--DLIFADPPYNLQLN----GQLYRPDHSLVDAVTDS 71
+ +++ G+S ++KL A V L+ DPPY ++ + + + V +
Sbjct: 165 RHRLMCGDSTSADNVKKLLAG-VRPHLMVTDPPYGVEYDPAWRNEALSGQKTKRTGVVLN 223
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
D+ EA+ F P +V + + L F I + I+W
Sbjct: 224 DDRADWREAWALF-------------PGDVAYVWHGALHAATVAESLVACGFDIRSQIIW 270
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
K + + + Y A N D + + W IP
Sbjct: 271 AKERLVLSR------------GHYHWMHEPCWYAVKGKAHW--NGDRKQVTIWNIPS--- 313
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ +D + +H TQKP + R + +++ PG + +PF GSGTS A+ R+ + +
Sbjct: 314 ----KGQDADTIHSTQKPVECMKRPMENNSSPGQAVYEPFSGSGTSIIAAEITGRACLAM 369
Query: 252 EMKQDYIDIATKR 264
E+ Y+D+ KR
Sbjct: 370 ELNPAYVDVGVKR 382
>gi|260577042|ref|ZP_05845021.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
gi|259020712|gb|EEW24029.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
Length = 419
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 34/248 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVD--LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++I G+S V+ +L V L+ DPPY + + + + +
Sbjct: 174 HRLICGDSTSADVVGRLLGD-VRPLLMVTDPPY--GVEYDPSWRNQAGAAKTKRTGKVLN 230
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
A + AW L P +V + + L F + + I+W K
Sbjct: 231 DDRA--DWREAW------ALFPGDVAYVWHGALHSSTVAESLVAAGFAVRSQIIWAKDRL 282
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + RG + K +
Sbjct: 283 VLS-RGDYHWQHEPCWYAVKKTGKGHWAGDRKQTTLWHISG------------------K 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++D +H TQKP + R +++++ PG + +PF GSGT+ A+ R GIE+
Sbjct: 324 DQDAATVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTGRVCFGIELNPV 383
Query: 257 YIDIATKR 264
Y+D+A +R
Sbjct: 384 YVDVAIER 391
>gi|254414217|ref|ZP_05027984.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
gi|196178892|gb|EDX73889.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
Length = 326
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/275 (17%), Positives = 91/275 (33%), Gaps = 34/275 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ + L ++P S+ + DPPY ++ S + W S++ +
Sbjct: 18 ILYADCFDWLAQIPENSIHGVVTDPPYGVKEYDIEQIKKRS--NGKGGIWRIPPSYDGHQ 75
Query: 83 A-------------------FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
F W RVL+P G ++V + + + L
Sbjct: 76 RSPLPRFTALTQKERTTLKCFFIEWSKLVVRVLRPGGHVFVASNAFLSQLVFSALVEGGL 135
Query: 124 WILNDIVWRKSNPMPNFRGR-----------RFQNAHETLIWASPSPKAKGYTFNYDALK 172
+++ R + + +E + +
Sbjct: 136 EFRGELIRLVRTLRGGDRPKNAEQEFPHVSSMPRGCYEPWGILRKPIPSGMKVSDCLREF 195
Query: 173 AANEDVQMRSDWLIPICSGSERL-RNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL-DP 230
+ SER R + HP+ KP++ L +++ + G+ IL DP
Sbjct: 196 QTGGLRRTPDGNPFNDVIFSERTPRQEREIANHPSLKPQSFLRQLVHAVLPLGEGILIDP 255
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
F GSG++ A A+ + IGIE +Y ++ I
Sbjct: 256 FMGSGSTVAAAEAVGVCCIGIERYTEYYQMSRIAI 290
>gi|323698906|ref|ZP_08110818.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. ND132]
gi|323458838|gb|EGB14703.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
ND132]
Length = 242
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 83/243 (34%), Gaps = 25/243 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I ++ L PA + I DPPY + + + WD
Sbjct: 21 IHNNDAYLFLGNCPAHRYEAIITDPPYEIGIASK--------------EWDCKELQIDVL 66
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+ RVLKP G ++V S L + + + P+ G
Sbjct: 67 AY------QFHRVLKPGGNVFVFCSDFQFGTWYRELSRYFTKLR-----KYAWCKPDSVG 115
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
E+ + Y + K + I E + K +
Sbjct: 116 YNKGMFQESFELGLHACSDDSYFDMGNYYKNHTVIGKTSGKERIMPDPDEEWTKGKGSKA 175
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
LHPTQK ++ ++ + +K GD ILDPF G+GT AK+L R F I+ A
Sbjct: 176 LHPTQKSLEVIKNLVSALSKEGDTILDPFSGTGTLRVAAKQLGRKFEMIDYGFRNHIAAW 235
Query: 263 KRI 265
RI
Sbjct: 236 DRI 238
>gi|323699610|ref|ZP_08111522.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio sp. ND132]
gi|323459542|gb|EGB15407.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio desulfuricans
ND132]
Length = 242
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 59/246 (23%), Positives = 87/246 (35%), Gaps = 31/246 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I ++ LE P+ + I DPP+ + + G+ WD
Sbjct: 21 IHNDDAFLFLENCPSHRYEAIITDPPFEIGIAGK--------------DWDCKKLRTDVL 66
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+ RVLKP G ++V S L + W K + +G
Sbjct: 67 AY------QFYRVLKPGGNVFVFCSDFQFGDWYRELSRYFTKLRK-YAWCKPDSRSTNKG 119
Query: 143 RRFQNAHETLIWASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
++ L S K Y A K + + M E K
Sbjct: 120 MFQESFELGLHVCSENSYFDKEGRYKNYVVAGKTSGNERMMPDP-------DEEWSTKKG 172
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ LHPTQK +++ ++ + +K GD I DPF G+GT G AK L R F +E
Sbjct: 173 EKTLHPTQKKLSVIETLVTALSKEGDTIFDPFAGTGTLGVAAKNLGRKFEMVEYGFRNHI 232
Query: 260 IATKRI 265
A RI
Sbjct: 233 AAWDRI 238
>gi|167631025|ref|YP_001681524.1| DNA methylase [Heliobacterium modesticaldum Ice1]
gi|167593765|gb|ABZ85513.1| DNA methylase [Heliobacterium modesticaldum Ice1]
Length = 637
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 21/200 (10%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP---DHSLVDAVTDSWD 73
++ I+G+++ VL+ L V +I+ DPPYN + + A+ D
Sbjct: 94 ENLYIEGDNLEVLKLLRNSYYNKVKMIYIDPPYNTGNDFIYKDNFAMNQRENSALEGEID 153
Query: 74 ------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + L + +LK +G +++ + + +
Sbjct: 154 EMGERLIVNQKSNGRYHSNWLSMMYPRLKVAKDLLKEDGVIFISIDDNEHSNLKLLCDEV 213
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA--LKAANEDV 178
+ +S+ N F H ++ + SP K N D+ N D
Sbjct: 214 FGSNSFIGDIVWRSSDNSNNNALTFSEDHNYILVYAKSPDWKPNFLNNDSKRQHFKNPDN 273
Query: 179 QMRSDWLIPICSGSERLRNK 198
R W + LR
Sbjct: 274 DPRGPWFDGNPVNNPGLRPN 293
Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP---------TQKPEALLSRILVSS 220
+ + S + +G R + +KL P T KP LL IL +
Sbjct: 342 TYLYEMKGLPPSSLCIDLEITGHTRRAKYELKKLFPEVPVTSLFSTPKPTLLLKYILTIA 401
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+ I+LD F GS TS +L R FI +++
Sbjct: 402 SDNNAIVLDFFSGSATSADAVMQLNAEDGGKRKFIMVQL 440
>gi|317479480|ref|ZP_07938612.1| DNA methylase [Bacteroides sp. 4_1_36]
gi|316904380|gb|EFV26202.1| DNA methylase [Bacteroides sp. 4_1_36]
Length = 634
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 23/223 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD--- 61
+ EN K+ I+G+++ VL+ L V +I+ DPPYN + +
Sbjct: 91 PVVENSVDWDNTKNIYIEGDNLEVLKLLQRSYMGKVKMIYIDPPYNTGNDFVYHDDFART 150
Query: 62 --------------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
TD+ KF S + + A LL R +L +G +++
Sbjct: 151 AAEEDIEAGNVDELGYRFRRNTDTNGKFHS--DWCSMIYARLLVARSLLTEDGVVFISID 208
Query: 108 YHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + + + + + P + N+H+ ++ +
Sbjct: 209 DNEVRNLRNICDEVFGEHNFVAQLVWERAFSPKNDAKYVSNSHDYILMYVKQIEDFTIGR 268
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+A +D S ++ + +P P
Sbjct: 269 LDRTEEANLRYSNPDNDPRGVWMSSDISVKTYNAACDYPITTP 311
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 201 EKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ + KP LL R++ +++ K I+LD F GS ++ K
Sbjct: 392 KGVFDGPKPVRLLQRLITLANLKEDSIVLDFFSGSASTAHALMKTN 437
>gi|121634979|ref|YP_975224.1| pseudogene (putative type III restriction-modification system
modification protein) [Neisseria meningitidis FAM18]
gi|120866685|emb|CAM10437.1| pseudogene (putative type III restriction-modification system
modification protein) [Neisseria meningitidis FAM18]
Length = 658
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 19/161 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 133 NLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDE 192
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + +S A+ F L R +LK +G +++ + ++ + +
Sbjct: 193 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 252
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ + N HET++ +
Sbjct: 253 FGEGNFIKDLIVNTSEGGGNAKYVVNGHETVLVYAKDITHF 293
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKK-------LRRSF 248
G T KP LL R+++S+T G D+ILD F GSGT+ + R +
Sbjct: 411 KGYSPFETPKPLDLLKRLVLSATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQNGNRRY 470
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
I +++ + + + R A + +I + + RV
Sbjct: 471 ICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 511
>gi|308389379|gb|ADO31699.1| putative type III restriction-modification [Neisseria meningitidis
alpha710]
Length = 598
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 38 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 97
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 98 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 157
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 158 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 217
Query: 181 RSDWLIP 187
R
Sbjct: 218 RPWRTHD 224
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 346 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 405
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 406 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 451
>gi|268595048|ref|ZP_06129215.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|291043524|ref|ZP_06569240.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|268548437|gb|EEZ43855.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|291011987|gb|EFE03976.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 631
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 71 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 130
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 131 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 190
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 191 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 250
Query: 181 RSDWLIP 187
R
Sbjct: 251 RPWRTHD 257
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 379 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 438
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 439 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 484
>gi|325208226|gb|ADZ03678.1| type III restriction-modification system enzyme mod [Neisseria
meningitidis NZ-05/33]
Length = 667
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 19/161 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 142 NLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDE 201
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + +S A+ F L R +LK +G +++ + ++ + +
Sbjct: 202 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 261
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ + N HET++ +
Sbjct: 262 FGEGNFIKDLIVNTSEGGGNAKYVVNGHETVLVYAKDITHF 302
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKK-------LRRSF 248
G T KP LL R+++S+T G D+ILD F GSGT+ + R +
Sbjct: 420 KGYSPFETPKPLDLLKRLVLSATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQNGNRRY 479
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
I +++ + + + R A + +I + + RV
Sbjct: 480 ICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 520
>gi|156741157|ref|YP_001431286.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156232485|gb|ABU57268.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 314
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 90/272 (33%), Gaps = 38/272 (13%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH--SLVDAVTDSWDKFSSFEAY 81
I + + + PA+S+ I DPPY + + Y PD + W SF+ +
Sbjct: 25 IHADCYEWMRQAPAESIHAIVTDPPYGV----KEYDPDQLEKRSNGHGGVWRIPPSFDGH 80
Query: 82 -------------------DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ W R+L+P +++ + + L +
Sbjct: 81 NRSPLPRFTALNPRERARIQEYFYEWARLTLRLLRPGAHVFLASNVFLSQIVFAALTDAG 140
Query: 123 FWILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
++ R + +E
Sbjct: 141 LEFRGQVIRLVRTLRGGDRPKNAEEEFPDVCSMPRGCYEPWGIFRKPVPKDMTVGACLRT 200
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPG-DIILD 229
+ SER K+ HP+ KP++ L +I+ +S G I+LD
Sbjct: 201 FQTGGLRRKPDGNPFEDVIESERTPQKERSIANHPSLKPQSFLRQIVYASLPLGKGIVLD 260
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
PF G+G++ A A+ + + IGIE ++Y ++
Sbjct: 261 PFMGAGSTLAAAEAVGYTAIGIEKNREYYAMS 292
>gi|194098944|ref|YP_002002009.1| Putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae NCCP11945]
gi|239999224|ref|ZP_04719148.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae 35/02]
gi|240016311|ref|ZP_04722851.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae FA6140]
gi|240113199|ref|ZP_04727689.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae MS11]
gi|240115959|ref|ZP_04730021.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae PID18]
gi|240123804|ref|ZP_04736760.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae PID332]
gi|254493988|ref|ZP_05107159.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|260440228|ref|ZP_05794044.1| putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae DGI2]
gi|268599279|ref|ZP_06133446.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268601624|ref|ZP_06135791.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268682428|ref|ZP_06149290.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|193934234|gb|ACF30058.1| Putative type III restriction-modification system methyltransferase
[Neisseria gonorrhoeae NCCP11945]
gi|226513028|gb|EEH62373.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268583410|gb|EEZ48086.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268585755|gb|EEZ50431.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268622712|gb|EEZ55112.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 598
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 38 NLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELALLANIDE 97
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
+ + +S A+ F L R +LK +G +++ + ++ +
Sbjct: 98 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 157
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + +E + + S + T + +D
Sbjct: 158 FGEGNFVAQLPWRKRTAKSDVPFGISQDYEWIFVFAKSCQFIAATKGKERRYYETDDFPD 217
Query: 181 RSDWLIP 187
R
Sbjct: 218 RPWRTHD 224
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 346 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 405
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 406 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 451
>gi|310766711|gb|ADP11661.1| putative DNA methylase [Erwinia sp. Ejp617]
Length = 506
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 67/325 (20%), Positives = 104/325 (32%), Gaps = 78/325 (24%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD---------------- 61
+ II+G+++ L L A V IF DPPYN Q + Y
Sbjct: 37 NMIIQGDNLLALRALMPLYAGQVKCIFIDPPYNTQSAFEHYDDKLEHSQWLSMMYPRLVL 96
Query: 62 -HSLVDAVTDSWDKFSSFEAY------------DAFTRAWLLACRRVLKPNGTLWVIGSY 108
L+ W EA+ D F + K + + +
Sbjct: 97 LRDLLAEDGSIWVTLDDNEAHYMKVMMDEVFGRDNFIANLIWRKNYAPKSSAKHFSVDHD 156
Query: 109 H-NIFRIGTMLQNLNFWILNDIVWR-KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT- 165
H +F + + N +D + NP + RG N + S +
Sbjct: 157 HIFVFAKNSKKWSPNPMPRSDKQNKAYKNPDNDRRGNWRPNNLAARNFYSKGTYSITCPS 216
Query: 166 ------FNYDALKAANEDVQMRSDWLIPICSGS--------------------------- 192
+ + +E D I G
Sbjct: 217 GRIIDGPPHGSYWRVSEKKFQELDKDNRIWWGKDGNNVPAPKIFLSEVKQGVVPQTLWSY 276
Query: 193 -ERLRNKDGEK---------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
E ++ +K + T KPE L+ R+L ++K D+ILD F GSGT+ AVA
Sbjct: 277 EEVGHTQEAKKEIVNIFRSEVFDTPKPERLIERVLHVASKDEDLILDSFLGSGTTAAVAH 336
Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
K+ R +IGIEM + R+
Sbjct: 337 KMNRRYIGIEMGEHARTHCIPRLQK 361
>gi|260583506|ref|ZP_05851254.1| DNA (cytosine-5-)-methyltransferase [Granulicatella elegans ATCC
700633]
gi|260158132|gb|EEW93200.1| DNA (cytosine-5-)-methyltransferase [Granulicatella elegans ATCC
700633]
Length = 178
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
R+LK ++ V S + + ++ F+ +W K+NP+P F N
Sbjct: 8 VFKELSRILKNGTSMIVFMSILRVETLVEIVNEFGFYYKTTGIWHKTNPIPRNMNLHFIN 67
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
++E I+ T+ N+ + + + E+ K HPTQ
Sbjct: 68 SNECWIYF---------TYKTKTGTFNNKGKLVLDYIETSVTTAREKKLGK-----HPTQ 113
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KP L + + GD+++DPF GSG+S + +L R+FIG+E+++ Y +A R+
Sbjct: 114 KPIILFEHFIRLLSNEGDLVVDPFLGSGSSAIASYRLNRNFIGVELEEKYAKLANMRVED 173
Query: 268 VQ 269
+
Sbjct: 174 EK 175
>gi|322379738|ref|ZP_08054049.1| DNA methylase [Helicobacter suis HS5]
gi|321147836|gb|EFX42425.1| DNA methylase [Helicobacter suis HS5]
Length = 272
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 29/262 (11%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL-VDAVTDSWDKFSSFEAYDAFTRAWLL 90
++++P +SV LI PPY + S ++ +E Y L
Sbjct: 13 MDEVPDQSVALIITSPPYFNIKDYSKNGTQSSKHSESHAGDLGNIDHYETYIKEMLQVWL 72
Query: 91 ACRRVLKPNGTLWV------------------IGSYHNIFRIGTMLQNLNFWILNDIVWR 132
C+RVL+PNG L + ++L++ ++L+ +W
Sbjct: 73 ECQRVLEPNGKLCINVPMLPMLKSVYNTHYNRHIFDLKSDIEHSILKSTKLYLLDLYIWN 132
Query: 133 KSN--------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
++N P+ QN E +I K K + + + +
Sbjct: 133 RTNTTKKLMFGSYPHPTNFYAQNTSEFIIVFVKDGKPKKVSQERKEASRLTQQEWVE--F 190
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
I ++ H PE L R+ + D++LDPF GSGT+ VAK L
Sbjct: 191 TKQIWDIPIPNKSDLAFGEHAAIMPELLAYRLTKMFSFVQDVVLDPFVGSGTTLKVAKAL 250
Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
R +IG E+ Y + ++
Sbjct: 251 DRQYIGYEIYPHYERLIRAKLQ 272
>gi|145631556|ref|ZP_01787323.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae R3021]
gi|144982825|gb|EDJ90347.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae R3021]
Length = 628
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 25/202 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---- 63
ENQNS ++ +I+G+++ VL+ L + +I+ DPPYN +G +Y+ D
Sbjct: 92 ENQNS----ENILIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTASDGFVYQDDRKFTPQ 147
Query: 64 -----------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + K +S A+ F L R +L+ +G +++ +
Sbjct: 148 QLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFISIDDNEQA 207
Query: 113 RIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT-FNYD 169
++ + + + + VW+ N HE + S + K D
Sbjct: 208 QLKILCDEVFGEENFVAEFVWKSRQNKDNRNITGASIDHEYIFCYSKTNLYKALRGAERD 267
Query: 170 ALKAANEDVQMRSDWLIPICSG 191
+ +N D R +W G
Sbjct: 268 TSQYSNPDNDPRGNWASGNMVG 289
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 29/127 (22%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKK----- 243
+G+ L + K K L+ +++ + P D+ILD F GSGT+ +
Sbjct: 373 NGTAELEDLFEAKYFDFPKSIQLIKQLIEQAILNPNDLILDFFAGSGTTAHAVMQLNAED 432
Query: 244 ---LRRSFIGIEM--------------KQDYIDIATKRIASVQPLGNIELTV------LT 280
R FI +++ + DI RI +
Sbjct: 433 EDNGNRKFICVQLPEPTDEKSEAYKAGYKTIFDITKARIEKSAVKIRQDFKETTADLGFK 492
Query: 281 GKRTEPR 287
+TEP
Sbjct: 493 IFKTEPH 499
>gi|332798821|ref|YP_004460320.1| adenine-specific DNA-methyltransferase [Tepidanaerobacter sp. Re1]
gi|332696556|gb|AEE91013.1| Site-specific DNA-methyltransferase (adenine-specific)
[Tepidanaerobacter sp. Re1]
Length = 637
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/216 (11%), Positives = 64/216 (29%), Gaps = 22/216 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ E+ S + ++ I+G+++ VL+ L + I+ DPPYN +
Sbjct: 86 PVKEDSVSWEDTENLYIEGDNLEVLKLLQESYLNKIKCIYIDPPYNTGKDFIYKDNFTQD 145
Query: 65 VDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
D + + + L R +L +G ++V +
Sbjct: 146 KDEYAEESGQVDEDGNRLFQNTEYNGRFHSDWLTMMYPRLKLARNLLSEDGVIFVSIDDN 205
Query: 110 NIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
+ + + ++ + + + E ++ + + + +
Sbjct: 206 EVHNLRKICDEIFGERNFVNVFVWRKSKGSGNDSKYIIVETEYILLYAKNLENVKFNNQI 265
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ ++ D G + G K +
Sbjct: 266 KS---IDDSKFKYKDEYFEERGGYNLEKLDRGSKGY 298
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 56/221 (25%), Gaps = 21/221 (9%)
Query: 51 LQLNGQLYRPDHSLVDAVTDSWDKFSS--FEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
++ L + + F+ D + L +V
Sbjct: 244 VETEYILLYAKNLENVKFNNQIKSIDDSKFKYKDEYFEERGGYNLEKLDRGSKGYVESLD 303
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
I L N + + + I K +N
Sbjct: 304 FGIEAPDGTLVFPNNRNRQ---FNDGWRWMWSKAKVEWGIKNGYIVVKKGQDDKWNVYNK 360
Query: 169 DALKAANEDVQMRSDWLIPICSGSER----------LRNKDGEKLHPTQKPEALLSRILV 218
K NE ++ L G E ++ G KP LL +L
Sbjct: 361 VYAKVDNEGNKIIRTKLYRNHIGFEENILNIQANFEMKRLFGNAYFSFPKPTTLLKHLLN 420
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
++ILD F GS T+ + R +I +++
Sbjct: 421 MFYLNDEVILDFFSGSATTAHAVMELNAEDGGGRKYIMVQL 461
>gi|298369708|ref|ZP_06981025.1| modification methylase LlaDCHIB [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282265|gb|EFI23753.1| modification methylase LlaDCHIB [Neisseria sp. oral taxon 014 str.
F0314]
Length = 90
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ + HPTQKP ALL R +++++ GD+I DPF GSGT+G A K R F G E +
Sbjct: 12 KTEKTFGKHPTQKPLALLKRCILAASNTGDLIFDPFMGSGTTGVAALKYGRKFCGCEQET 71
Query: 256 DYIDIATKRIAS 267
++ ++A KR+ +
Sbjct: 72 EFFELAKKRLEN 83
>gi|154148655|ref|YP_001406623.1| modification methylase CcrMI (adenine-specificmethyltransferase
CcrMI) (M.CcrMI) [Campylobacter hominis ATCC BAA-381]
gi|153804664|gb|ABS51671.1| modification methylase CcrMI (Adenine-specificmethyltransferase
CcrMI) (M.CcrMI) [Campylobacter hominis ATCC BAA-381]
Length = 88
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSS 77
K+ I++G+ + +L+ LP KS+DLIFADPPY ++++G L RP+ D D F +
Sbjct: 2 IKNTILQGDCLKILKTLPDKSIDLIFADPPYWMRVDGILKRPEGENFSGCDDKRDNNFLN 61
Query: 78 FEAYDAFTRAWLLACRRVLKPN 99
+ Y FT WL C+ VLK N
Sbjct: 62 NDDYSQFTEKWLNECKIVLKNN 83
>gi|213615498|ref|ZP_03371324.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 211
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 19/198 (9%)
Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
++ S N+ I L+ + + + + + F + +E ++ +PK+
Sbjct: 1 IMNSTENMPYID--LKCRTLFTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKNPKS-- 56
Query: 164 YTFNYDALKA----------ANEDVQMRSDWLIPICSGS----ERLRN-KDGEKLHPTQK 208
YTFN DA+ + + G+ R+R D + HPTQK
Sbjct: 57 YTFNRDAILVETTTGAKRALIDYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQK 116
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P ALL RI+++S+ P D +LDPF GS T+GAVA R FIGIE+ +Y+ + +R++
Sbjct: 117 PSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLRRLSVT 176
Query: 269 QPLGNIELTVLTGKRTEP 286
EL + ++T+
Sbjct: 177 SHYSENELAKVKKRKTQN 194
>gi|294676809|ref|YP_003577424.1| type III restriction-modification system RcaSBIIP Mod subunit
[Rhodobacter capsulatus SB 1003]
gi|294475629|gb|ADE85017.1| type III restriction-modification system RcaSBIIP, Mod subunit
[Rhodobacter capsulatus SB 1003]
Length = 597
Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 28/222 (12%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ II+G+++ L+ L A VD IF DPPYN G Y + ++ + W
Sbjct: 40 NLIIQGDNLHALKALMPMYAGKVDCIFIDPPYNTGNEGWAY--NDNVNAPMIKEWLNSNP 97
Query: 73 ---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILND 128
+ + + A L +L G++W+ + R +L
Sbjct: 98 IGIEDGLRHDKWCAMMWPRLRLLHELLAEWGSIWITLDDNEAHRAKILLDEIFGEDAFVA 157
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ + + N + H+ ++ + +P A + +D
Sbjct: 158 NMVWQKRYVANVTALHLSDMHDHVLVYAKNPSEFALGKIGRTEAQAADYKNPDNDPR--- 214
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
G R ++ K + + + T P DP
Sbjct: 215 --GPWRAQDLSASKQYQAG---------IFTITGPDGATFDP 245
Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDII 227
+A D+ + +++ DG T KP+ L+SRIL ++
Sbjct: 285 EAQDGLTPVTWWSHDFAGHNKEATLEMKDIFDGASPFDTPKPKRLISRILELIGDDDALV 344
Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIAS 267
LD F GSGT+ + R FI EM+ + +R+
Sbjct: 345 LDSFAGSGTTAHAVLEANKRDGGSRRFILCEMEDYADRLTAERVRR 390
>gi|163756649|ref|ZP_02163760.1| hypothetical protein KAOT1_00260 [Kordia algicida OT-1]
gi|161323324|gb|EDP94662.1| hypothetical protein KAOT1_00260 [Kordia algicida OT-1]
Length = 662
Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 22/175 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K N+ + + ++ +IKG+++ VL+ L + V +I+ DPPYN +G +Y
Sbjct: 79 KEDETFNQKEEN-KNSENLLIKGDNLEVLKHLSNAYYEKVKMIYIDPPYNTGSDGFVYAD 137
Query: 61 DHSLVDA----------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
D + + K +S A+ F L +++LK +G ++V
Sbjct: 138 DRKFTSEELQELAGVNEERAKRILDFTQSKSNSHSAWLTFMYPRLYIAKQLLKEDGVIFV 197
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR-GRRFQNAHETLIWASPS 158
+ + ++ ++ + F N + N PN R HE +++ S +
Sbjct: 198 SIDDNEVAQLRLLMDEV-FGEENFLGEFVVNSTPNARDYGHIGKMHEYVVFYSKN 251
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR----- 245
G+ + G+K+ KP L+ + D+ILD F GSGT+G +L
Sbjct: 391 GTAEVERIFGKKVFSFPKPITLIKSFALIGLNQNDLILDFFAGSGTTGDAVMQLNSEDGG 450
Query: 246 -RSFIGIEM 253
R FI ++
Sbjct: 451 QRKFILAQL 459
>gi|88811354|ref|ZP_01126609.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
gi|88791243|gb|EAR22355.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
Length = 460
Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 13/163 (7%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ TQKPE +L RI+ T GD++ D F GSGT+ AVA+KL R +I ++ + I
Sbjct: 46 SERTGYATQKPEEMLERIIKLGTNGGDLVADFFAGSGTTAAVAEKLGRKWIATDLGKFAI 105
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
KR+ VQ R + R + G L +A+ A V
Sbjct: 106 HTTRKRLIGVQ---RELKAADRPFRAFEVLNLGRYERRAYLNVGGRL-SAEQREQALV-- 159
Query: 319 DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSI 361
+ + + +E + +F++ ++ G L I
Sbjct: 160 -------QKEREFRELVLRAYKTEPLDNDSFFHGKQAGRLVVI 195
>gi|148264781|ref|YP_001231487.1| DNA methylase N-4/N-6 domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146398281|gb|ABQ26914.1| DNA methylase N-4/N-6 domain protein [Geobacter uraniireducens Rf4]
Length = 609
Score = 92.8 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
SL + S+ + + II G+++ L+ L A ++ IF DPPYN G Y +
Sbjct: 30 KSLPAEGQKPSLDD--NLIIHGDNLEALKALLPTHAGKINCIFIDPPYNTGNEGWCYNDN 87
Query: 62 --------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
A + + + L +L +G L+V + R
Sbjct: 88 VRSPLMKEWLKKSANPVDKEDLERHDKWLCMMWPRLNLLHELLADDGVLFVTIDDNEQHR 147
Query: 114 IGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY----TFN 167
+ +L + + + + + F + ++ S + T
Sbjct: 148 LRDILDEVFHSEDAFYSHIAWQKKYATSNDAKGFSTMFDHILVYRKSEEFSRNLLGRTAG 207
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRN 197
DA +D +E N
Sbjct: 208 NDANYRHEDDKGTFRSDNYTCNKTAEERPN 237
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLS 214
P K Y D+ + LR K T KP LLS
Sbjct: 284 KVPGFKRYKHLLQGGGGTVPSTWWPHDFAGHTDEAKKELREIMEGKGTEFFTPKPTRLLS 343
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIAS 267
RIL +T IILD F GSGT+ R F+ IE ++ + +R+
Sbjct: 344 RILEIATDENSIILDSFAGSGTTAHAVLAANQKDGGNRRFMLIECEEYADTLTAERVRR 402
>gi|300871092|ref|YP_003785964.1| DNA methylase N-4/N-6 domain-containing protein [Brachyspira
pilosicoli 95/1000]
gi|300688792|gb|ADK31463.1| DNA methylase N-4/N-6 domain protein-like protein [Brachyspira
pilosicoli 95/1000]
Length = 283
Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 64/284 (22%), Positives = 102/284 (35%), Gaps = 38/284 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT------ 85
+E+L + S++ I +DPPY L L +L P + D V W + + AF
Sbjct: 1 MEELESNSINAIASDPPY-LYLKHKLDIPFN--EDKVFGEWKRLLKDNSMIAFFGRGDAF 57
Query: 86 RAW----------LLACRRVLKPNGTLWVI--------GSYHNI-------FRIGTMLQN 120
W K N + ++ S+ ++ +
Sbjct: 58 FRWNLILEKLGFKFKESAVWEKENASNYLNNFLRIHEDISFRSLGNANLRKEYTDYLEYQ 117
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA---KGYTFNYDALKAANED 177
+N L+ I+ GR + + + + Y + A
Sbjct: 118 INKNKLDRIIDIWKGLKSALNGRDKDDVIKYIETGIKEFNYESKRKYEITARKHQGAKRG 177
Query: 178 VQ-MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
V +S + I + R + + HPTQKP AL+ RI+ + D ILDPF G G+
Sbjct: 178 VNLFQSVKVGKIETSIMRCNREQYKYQHPTQKPVALMERIVKLISNENDTILDPFMGGGS 237
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
+G + R FIGIE+ +Y D A RI EL
Sbjct: 238 TGVACINVNRKFIGIELDDEYFDTAVNRITKAYQDKENELNNEK 281
>gi|15790524|ref|NP_280348.1| CTAG modification methylase [Halobacterium sp. NRC-1]
gi|169236262|ref|YP_001689462.1| site-specific DNA-methyltransferase [Halobacterium salinarum R1]
gi|10581030|gb|AAG19828.1| CTAG modification methylase [Halobacterium sp. NRC-1]
gi|167727328|emb|CAP14114.1| site-specific DNA-methyltransferase [Halobacterium salinarum R1]
Length = 348
Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 57/273 (20%), Positives = 97/273 (35%), Gaps = 26/273 (9%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDK 74
+ E ++ G++ + L A +VDL+ PPY +++ ++ + A D+
Sbjct: 1 MDETTHRVAVGDARDL--PLAADAVDLVVTSPPYPMIEMWDAVFTDLDPEIGAALDAGAG 58
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----------IGSYHNIFRIGTMLQNLNF 123
+ + A +RVL+P G V Y N R+ +L F
Sbjct: 59 ERAHDRMHAVLADAWREVKRVLRPGGIAVVNVGDATRSVDRFRVYDNHARVTNAFADLGF 118
Query: 124 WILN---DIVWRKSNPMPNFRGRRFQNAHETLIWAS--------PSPKAKGYTFNYDALK 172
L S G NA+ TL G Y+A
Sbjct: 119 DPLPGVLWRKPTNSAAKFMGSGMVPPNAYVTLEHEHLLVFRNGERRGFEPGADRRYEAAY 178
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
E SD + + L + G + P AL R++ + GD +LDPF+
Sbjct: 179 FWEERNDWFSDVWTDLNGARQDLA-EPGLRERSAAFPFALPYRLINMYSVYGDTVLDPFW 237
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
G+GT+ A R+ +G++ + + RI
Sbjct: 238 GTGTTSVAAAVAGRNSVGVDADPEVVAAFADRI 270
>gi|254521561|ref|ZP_05133616.1| type III restriction-modification system, methyltransferase
[Stenotrophomonas sp. SKA14]
gi|219719152|gb|EED37677.1| type III restriction-modification system, methyltransferase
[Stenotrophomonas sp. SKA14]
Length = 508
Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 18/193 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L A V IF DPPYN + D +D
Sbjct: 42 NMLIEGDNLDALKALLPYYAGQVKCIFIDPPYNTRSAF--------------DHYDDNLE 87
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ + L R +L +G++W+ + + +
Sbjct: 88 HAKWLSMMYPRLELLRDLLAEDGSIWITLDDNEAHYFKVIADEVFGRKNFIANAIWQKVF 147
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
P R H+ L + + + D P SG R
Sbjct: 148 SPKNSARHLSVDHDHLFVYAKDADIWRPNDMPRSERQTATYKNPDEDPRGPWTSGDLSAR 207
Query: 197 NKDGEKLHPTQKP 209
N G +P P
Sbjct: 208 NFYGAGTYPITCP 220
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNK----DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ V ++ W+ ++ + + G + T KPE LL R++ +++ GD++LD
Sbjct: 270 KQGVVPQTIWMNSDVGNTQEAKKEVVALFGSENFMTPKPERLLQRVIHIASEEGDLVLDS 329
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
F GS T+ AVA K+RR +IGIE+ + + R+
Sbjct: 330 FLGSATTSAVAHKMRRKWIGIEVGEHARLLGQPRMKK 366
>gi|257455090|ref|ZP_05620329.1| DNA methylase N-4/N-6 domain protein [Enhydrobacter aerosaccus
SK60]
gi|257447505|gb|EEV22509.1| DNA methylase N-4/N-6 domain protein [Enhydrobacter aerosaccus
SK60]
Length = 572
Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 64/318 (20%), Positives = 104/318 (32%), Gaps = 73/318 (22%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPY-----------------NLQLNGQLYRP 60
+ II+G+++ L+ L V IF DPPY L + +
Sbjct: 39 NLIIQGDNLQALKALLPLYGGQVKCIFIDPPYNTQSAFEHYDDKLEHAQWLSMMYPRLQL 98
Query: 61 DHSLVDAVTDSWDKFSSFEAYD------------AFTRAWLLACRRVLKPNGTLWVIGSY 108
L+ W E++ F + K + I
Sbjct: 99 LKDLLHDTGSIWITLDDNESHYLKVMCDEIFGRRNFMGNIIWNHSVQAKGYAGKFSIHHN 158
Query: 109 HN-IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ----------NAHETL----- 152
H ++R N + SNP + +GR N +
Sbjct: 159 HILVYRKSDSFLLKNLGRTEEHNVNYSNPDDDPKGRWRSGDVRNALVRPNLMYNITTPNG 218
Query: 153 ---------IWASP-----------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
S ++ T + ++D ++ +G+
Sbjct: 219 NIIEHPVKGWRFSKETFERELAEGKIIFSEDETRIIRKIYLCDQDGRVPESLWFADEAGT 278
Query: 193 ER-----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
R L+N +++ T KPE L+ RIL ST D++LD F GSGT+ AVA K+ R
Sbjct: 279 TRDASSELKNLFEDEIFETPKPEKLIERILSISTSENDLVLDSFLGSGTTAAVAHKMTRR 338
Query: 248 FIGIEMKQDYIDIATKRI 265
+IGIEM + R+
Sbjct: 339 YIGIEMGEHSKTHVIPRL 356
>gi|260576702|ref|ZP_05844688.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
gi|259021069|gb|EEW24379.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
Length = 419
Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 34/248 (13%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVD--LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++I G+S V+ +L V L+ DPPY + + + + +
Sbjct: 174 HRLICGDSTSADVVGRLLGD-VRPLLMVTDPPY--GVEYDPSWRNQAGAAKTKRTGKVLN 230
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
A + AW L P +V + + L F + + I+W K
Sbjct: 231 DDRA--DWREAW------ALFPGDVAYVWHGALHAGEVADSLAAAGFAVRSQIIWAKDRL 282
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + + Y D + + W I +
Sbjct: 283 VLSR------------GDYHWQHEPCWYAVRVKGKGHWAGDRKQTTLWHIS-------GK 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++D +H TQKP + R +++++ PG + +PF GSGT+ A+ R GIE+
Sbjct: 324 DQDAATVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTGRVCFGIELNPA 383
Query: 257 YIDIATKR 264
Y+D+A +R
Sbjct: 384 YVDLAIER 391
>gi|194015654|ref|ZP_03054270.1| type III DNA modification methyltransferase [Bacillus pumilus ATCC
7061]
gi|194013058|gb|EDW22624.1| type III DNA modification methyltransferase [Bacillus pumilus ATCC
7061]
Length = 634
Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 18/174 (10%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
S+ L I E + ++ I+G+++ VL+ L + +I+ DPPYN +
Sbjct: 72 SKGTLLPIIEKSKNFDTTENLYIEGDNLEVLKLLQKSYNGKIKMIYIDPPYNTGRDFVYK 131
Query: 59 RPDHSLVDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLW 103
+ + + + + A L R +L G +
Sbjct: 132 DNFKDGIQNYLEQTGQVDTHGNMISTNTESNGRFHTDWLNMMYARLKLSRNLLSDKGVIC 191
Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ ++ +L + + H+ + +
Sbjct: 192 INIGEEEHEKLKFILNEIYGEKNLLGTIIWKKKTNGNNQGHIPSIHDYIYCYAK 245
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
K+ KP LL R+L T+ DI+LD F GS T+ + R FI +++
Sbjct: 379 KIFSHPKPVGLLKRLLEVFTEKNDIVLDFFSGSATTAHATIQLNSEDEGNRKFILVQL 436
>gi|325168258|ref|YP_004277299.1| DNA methyltransferase [Acidiphilium multivorum AIU301]
gi|325052937|dbj|BAJ83270.1| putative DNA methyltransferase [Acidiphilium multivorum AIU301]
Length = 324
Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 52/273 (19%), Positives = 106/273 (38%), Gaps = 36/273 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVD-LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE- 79
+++ ++ L +LP +SVD ++F DPPY ++ +L + + ++ W SF+
Sbjct: 26 QLVHADAFEWLSQLPPESVDGMVF-DPPYGVK-EYELDQIEM-MLSGGPGIWRLPPSFDG 82
Query: 80 ------------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
F R + +A LKP +++ + + + + +
Sbjct: 83 SQRAPLPRFTALNPEERTTLHRFFRDFAVAALPALKPGAHIFMASNSFLSQLVFSAMIDG 142
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAH----------ETLIWASPSPKAKGYTFNYDAL 171
F +I+ R + + + P T
Sbjct: 143 GFEFRTEIIRLVQTLRGGDRPKLGEEEYPDVCSLPRGGYEPWGLFRKPMPPKMTVRECLR 202
Query: 172 KAANEDVQMRSDWLIPI-CSGSERL-RNKDGEKLHPTQKPEALLSRILVSSTKPG-DIIL 228
++ RSD SER + + HP+ KP++LL +++ + G +++
Sbjct: 203 IYGTGGLRRRSDGNPFCDVIDSERTPKREKEIAPHPSLKPQSLLRQLVRAVLPLGKGVVV 262
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
DPF GSG++ A A+ + +G+E DY ++A
Sbjct: 263 DPFMGSGSTVAAAEAVGYKCVGVERYDDYFEMA 295
>gi|254450262|ref|ZP_05063699.1| modification methylase DpnIIB [Octadecabacter antarcticus 238]
gi|198264668|gb|EDY88938.1| modification methylase DpnIIB [Octadecabacter antarcticus 238]
Length = 422
Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 51/265 (19%), Positives = 93/265 (35%), Gaps = 32/265 (12%)
Query: 21 DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++I G+S S V L + L+ DPPY +Q + + A
Sbjct: 177 HRLICGDSTSADVVGRLLGDEKPLLMVTDPPYGVQYD----PGWRNKAGAAKTKRTGKVL 232
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + AW L P +V + + L F I + I+W K +
Sbjct: 233 NDDRADWREAW------ALFPGDVAYVWHGALHAATVADSLIASGFNIRSQIIWAKDRLV 286
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + Y D + + W I ++
Sbjct: 287 LSR------------GDYHWQHEPCWYAVRAKGKGHWAGDRKQTTLWQIAN-------KD 327
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+D + +H TQKP + R +++++ PG + +PF GSGT+ A+ R GIE+ Y
Sbjct: 328 QDADTVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTARVCYGIELNPAY 387
Query: 258 IDIATKRIASVQPLGNIELTVLTGK 282
+D+ +R + + +
Sbjct: 388 VDVVIERWQAFTGKDALLVETGESF 412
>gi|46200906|ref|ZP_00207895.1| COG0863: DNA modification methylase [Magnetospirillum
magnetotacticum MS-1]
Length = 422
Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 55/281 (19%), Positives = 101/281 (35%), Gaps = 34/281 (12%)
Query: 20 KDKIIKGNSISV--LEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S S +E+L A ++ L+ DPPY ++ + A T
Sbjct: 173 RHRLLCGDSTSATDVERLLAGAMPHLMVTDPPYGVEYDPTWRNEAGVSSSARTGK----V 228
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + + AW L P +V S + L+ F + I+W K
Sbjct: 229 ANDDRADWREAW------ALFPGEVAYVWHSAIYTRTVADSLEANGFKLRAQIIWSKPRF 282
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ RG + A A +
Sbjct: 283 VLG-RGDYHWQHEPCWYAVRKNGTGHWQGARDQATIWAIGNNG----------------- 324
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++D +H TQKP + R +++++ GD + +PF GSGT+ A+ R + +E+
Sbjct: 325 DEDEATVHGTQKPVECMRRPILNNSAEGDAVYEPFAGSGTTVIAAETTGRICVAMELNPA 384
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
Y D+ R Q L + + R+ +A +V G
Sbjct: 385 YADVIVGR---WQKLTGQKAVLDGDGRSFEEIAAGKVVSAG 422
>gi|113971114|ref|YP_734907.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella sp.
MR-4]
gi|113885798|gb|ABI39850.1| DNA methylase N-4/N-6 domain protein [Shewanella sp. MR-4]
Length = 622
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/297 (16%), Positives = 94/297 (31%), Gaps = 24/297 (8%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
SL + S+ + + II G+++ L+ L A VD IF DPPYN G Y +
Sbjct: 30 KSLPLEGKSASLDD--NLIIHGDNLEALKALLPTHAGKVDCIFIDPPYNTGNEGWCYNDN 87
Query: 62 --------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
A + + + L+ + +L +G++W+ + +
Sbjct: 88 VRSPLMQEWLKKSANPVDKEDLERHDKWLCMMWPRLMLLKELLSNDGSIWLTLDDNEVNS 147
Query: 114 IGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS---PSPKAKGYTFNYD 169
++ + +N HE ++ S K T
Sbjct: 148 AKLLMDEVFGDDKFVGLFVVVNNLKGRNDKEHIAITHEYILVYSGDEFVSKGLDLTEEQL 207
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
++ GSE R + +P ++ + L S+ DI +
Sbjct: 208 KDFTLKDESGCLYSLRDLRKRGSEDRREDRPKMFYPIFWNKSANTLSLERSSN-NDIEIL 266
Query: 230 PFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
P G GT G + + + + + R + L GK+++
Sbjct: 267 PMRGDGTHGR--WRWGKARAFQNLKNLEARESSKGRFDVSY---RVYLDETDGKKSK 318
Score = 39.6 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYID 259
K A + R + S I+LD F GSGT+ + R FI +E +
Sbjct: 348 APKTLAHVQRCIELSIGREGIVLDSFAGSGTTAHAVLEANKKDNGSRKFILVECEDYADT 407
Query: 260 IATKRIAS 267
+ +R+
Sbjct: 408 LTAERVRR 415
>gi|254672454|emb|CBA05865.1| Adenine specific DNA methylase Mod [Neisseria meningitidis
alpha275]
Length = 563
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 19/161 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 38 NLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDE 97
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + +S A+ F L R +LK +G +++ + ++ + +
Sbjct: 98 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV 157
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ + N HET++ +
Sbjct: 158 FGEGNFIKDLIVNTSEGGGNAKYVVNGHETVLVYAKDITHF 198
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKK-------LRRSF 248
G T KP LL R+++S+T G D+ILD F GSGT+ + R +
Sbjct: 316 KGYSPFETPKPLDLLKRLVLSATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQNGNRRY 375
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
I +++ + + + R A + +I + + RV
Sbjct: 376 ICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 416
>gi|265984913|ref|ZP_06097648.1| DNA methylase N-4/N-6 domain-containing protein [Brucella sp.
83/13]
gi|264663505|gb|EEZ33766.1| DNA methylase N-4/N-6 domain-containing protein [Brucella sp.
83/13]
Length = 215
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 26/201 (12%)
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
D + + + R RVLK G +H + + F ++
Sbjct: 34 FRDRQGRTVVNDDNGHWLRPAFNQIHRVLKDGGFAISFYGWHKVDLFMDAWKTAGFRVVG 93
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
IV+RK + + HE + D + + P
Sbjct: 94 HIVFRKHYA---SSAKFLRYQHEQAYLLAKGNVRFP-------------DSPIPNVIDFP 137
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
G +LHPTQKP L+ ++ + TKP D++LDPF GSG++ A A+ L R
Sbjct: 138 YT----------GNRLHPTQKPVEALAPLIKAFTKPDDLVLDPFCGSGSTLAAAQHLGRD 187
Query: 248 FIGIEMKQDYIDIATKRIASV 268
+IGIE+ +++ A KR+AS+
Sbjct: 188 WIGIELDKNHYATACKRLASM 208
>gi|218439657|ref|YP_002377986.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
gi|218172385|gb|ACK71118.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
Length = 438
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 65/352 (18%), Positives = 113/352 (32%), Gaps = 73/352 (20%)
Query: 20 KDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-- 72
K+K+I G+++ VL L V LI+ DPPY + + + +H+ D + +
Sbjct: 55 KNKLIYGDNLRVLRTLLNDVNIAGKVGLIYIDPPYATGASFESRQQNHAYYDLMEGAEYI 114
Query: 73 ---------------DKFSSFEAYDAFTRAWLLACRRVL--KPNGTLWVI---GSYHNIF 112
D+ S + D + + N W+ + N
Sbjct: 115 EFLRQRLILLRELLSDEGSIYVHLDEKMAFPIKIIMDEIFGSKNFRNWITRKKCNPKNYT 174
Query: 113 RIGT------MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP------- 159
R +L +S + ET P
Sbjct: 175 RRQYGNISDYILFYTKTDNYIWNQPFESWTEVTAKKEYQYIEEETGRRYKKVPIHAPGVR 234
Query: 160 ----------------KAKGYTFNYDALKAANEDVQMRSDWL---------------IPI 188
K YT A ++ S I
Sbjct: 235 KGATGQPWRGMLPPPGKHWQYTPQILDEMDARGEIYWSSTGNPRRKVYLDNSQGIAVQDI 294
Query: 189 CSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ N++ + +PT+K +L RI+ +S+ D++LD F GSGT+ AVA++L R
Sbjct: 295 WLDFKDAHNQNIKITGYPTEKNSEMLRRIISASSNAEDLVLDAFAGSGTTVAVAEELGRQ 354
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK-RTEPRVAFNLLVERGL 298
+I I+ I R+A + + K + E + N ++ GL
Sbjct: 355 WIAIDNSLLAIKTMIHRLAMGTEVMGDFVKSNETKFKQECLININRVLHSGL 406
>gi|28198738|ref|NP_779052.1| methyltransferase, type III restriction-modification system
[Xylella fastidiosa Temecula1]
gi|182681431|ref|YP_001829591.1| site-specific DNA-methyltransferase (adenine-specific) [Xylella
fastidiosa M23]
gi|28056829|gb|AAO28701.1| methyltransferase, type III restriction-modification system
[Xylella fastidiosa Temecula1]
gi|182631541|gb|ACB92317.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
fastidiosa M23]
gi|307579882|gb|ADN63851.1| site-specific DNA-methyltransferase (adenine-specific) [Xylella
fastidiosa subsp. fastidiosa GB514]
Length = 542
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 11/195 (5%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W + II+G++ L L ++ I+ DPPYN +Y D D ++
Sbjct: 61 WPNLIIEGDNFDALRALRMTHRGAIRCIYIDPPYNTGNRDFVY------NDCFIDKTHRY 114
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ F L + +L +G ++V + +FR+G ++ V +
Sbjct: 115 R-HSLWLEFIYRRLQLAKELLADDGVIFVSIDDNELFRLGMLMDRVFGHDHFIANVIWQK 173
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
P + F + HE ++ + + + +D P SG
Sbjct: 174 IFSPKNTAQHFSDDHEYILVFARNRTLWRSNPLPRSETQDKAYKNPDNDPRGPWTSGDLS 233
Query: 195 LRNKDGEKLHPTQKP 209
RN +P P
Sbjct: 234 ARNFYSLGTYPITCP 248
>gi|317181433|dbj|BAJ59217.1| Type II restriction enzyme M protein [Helicobacter pylori F57]
Length = 139
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK S
Sbjct: 19 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKEESVNDI 76
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
D F W+ ++ LK G+L + G+YHNIF +G +LQ L+F ILN I W+K+NP P
Sbjct: 77 DEFNYQWINNAKKALKNTGSLLISGTYHNIFSLGRILQKLDFKILNLITWQKTNPRP 133
>gi|4584114|emb|CAB40611.1| type III restriction-modification system enzyme Mod [Bacillus
cereus ATCC 10987]
Length = 669
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 76/228 (33%), Gaps = 28/228 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL 57
+ + ++EN+ S K+ G+++ VL L S+D+I+ DPPYN +G
Sbjct: 91 VPNNDHNNLDENKKS----KNLFFTGDNLEVLRHLQNNYNNSIDMIYIDPPYNTGDDG-F 145
Query: 58 YRPDHSLVD--------AVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTL 102
PD D + D + ++ A+ F L +R+LK NG +
Sbjct: 146 IYPDKFEFDDETLKDMFGMNDKEFERLKSIQGTATHSAWLTFMYPRLWLAKRLLKENGVI 205
Query: 103 WVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + + +L ++ E ++ + +
Sbjct: 206 LLSIDDNEQANLTLLLNEIFGEGNKLPPFTWQNKKGGGNDSTHVAEETEVVLVYAKNINL 265
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
F + + + + + K G++ +P + P
Sbjct: 266 VPKLFESYNSEYVKRYKEEDAYGRFYW----DTFKRKSGKQYYPIEAP 309
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSD--WLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
K + +N + + RS SGS+ + N +++ KP L+
Sbjct: 342 KFVKNRAGEWNVHFKQRIPNGKKPRSILSDKGTTASGSQEILNYFSKEVFSNPKPTTLIE 401
Query: 215 RILVSSTKPGDIILDPFFGSGTSG------AVAKKLRRSFIGIEMKQDYIDI 260
+ T IILD F GS T+ A++ R FI ++ + I
Sbjct: 402 YFIEVFTDDKAIILDFFAGSATTADAVMKLNAAQQCDRKFILAQLNELTYTI 453
>gi|213419982|ref|ZP_03353048.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 149
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
D + HPTQKP ALL RI+++S+ P D +LDPF GS T+GAVA R FIGIE+ +Y+
Sbjct: 45 DEYENHPTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGRKFIGIELNNEYV 104
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEP 286
+ +R++ EL + ++T+
Sbjct: 105 KMGLRRLSVTSHYSENELAKVKKRKTQN 132
>gi|126461424|ref|YP_001042538.1| nuclease [Rhodobacter sphaeroides ATCC 17029]
gi|126103088|gb|ABN75766.1| ParB domain protein nuclease [Rhodobacter sphaeroides ATCC 17029]
Length = 459
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/273 (20%), Positives = 99/273 (36%), Gaps = 46/273 (16%)
Query: 21 DKIIKGNSISVLEKLPA-------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+++ G+S KL +S+D + DPPYN+ G + + D + D
Sbjct: 176 HRVMCGDST----KLADVEALCGGESIDACWTDPPYNVDYKGAAGKIAN---DNMAD--- 225
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
A+ F +A L+ VL+ ++V + + F + +VW K
Sbjct: 226 -----AAFREFLQAAFLSAFAVLRSGAPIYVAHADTEGENFRGAFREAGFKLSGCLVWVK 280
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS--- 190
+ + +Q HE +++ A + + L
Sbjct: 281 PSLVLG--RSDYQWRHEPILYGWKPGAAHAWFGGRARTTVFDAGEVPFEVQLDGSVHVKS 338
Query: 191 -----------------GSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPF 231
+R + +K HPT KP L+ +LV+ST+ GD +LD F
Sbjct: 339 GGQTFVIRGEALTVEAVEGSVIRAEKPKKSVEHPTMKPVGLVRDMLVNSTRRGDSVLDLF 398
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
GSG++ K+ R +E + D+ +R
Sbjct: 399 GGSGSTLIACHKVGRVARLMEFDPKFADVIVRR 431
>gi|190573864|ref|YP_001971709.1| putative DNA methylase [Stenotrophomonas maltophilia K279a]
gi|190011786|emb|CAQ45406.1| putative DNA methylase [Stenotrophomonas maltophilia K279a]
Length = 483
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 78/267 (29%), Gaps = 52/267 (19%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
L F PPY Q + +DA R + +G
Sbjct: 215 LCFTSPPYGNQRDYTSG------------------GISDWDALMRGVFANL--PMAADGQ 254
Query: 102 LWV-----IGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ V I L + + VW + MP R + E +
Sbjct: 255 VLVNLGLIHRDNEVIPYWDGWLAWMRSQGWRRFAWYVWDQGPGMPGDWQGRLAPSFEFVF 314
Query: 154 WA----SPSPKAKGYTFNYDALK-------------------AANEDVQMRSDWLIPICS 190
K ++ + +
Sbjct: 315 HFNRESRKPNKIVPCKHAGQESHLRADGSSTAMRGKDGEVGGWTHKGQPTQDTRIPDSVI 374
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
R + K G+ + HP P AL ++ + T GDI+ +PF GSGT+ A++ R
Sbjct: 375 RVMRHKGKIGQDIDHPAVFPVALPEFVIEAYTDAGDIVFEPFGGSGTTMLAAERTGRICR 434
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIEL 276
+E+ Y+D+A KR P + L
Sbjct: 435 SVEIAPQYVDVAIKRFQQNHPGVPVTL 461
>gi|167462734|ref|ZP_02327823.1| hypothetical protein Plarl_09255 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382813|ref|ZP_08056656.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321153196|gb|EFX45643.1| adenine-specific DNA methylase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 247
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/269 (19%), Positives = 100/269 (37%), Gaps = 42/269 (15%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ ++II + + ++P SVD+I D PY + + WD
Sbjct: 1 MKGLLNQIIHADCFDIFPEIPDGSVDMILCDLPY----------------ETTQNEWDVG 44
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ +R++K NG + + +G + + + +W K+N
Sbjct: 45 LPLD-------LLWSHYKRIIKQNGAILLTAQPPFDKVLG---MSNINMLRYEWIWVKNN 94
Query: 136 PMPNFRGRRFQ-NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD--WLIPICSGS 192
P + +HE ++ N ++ SD G
Sbjct: 95 PTGFLNANKMPLKSHENILVFYRRLPTYNP-QKTQGHPPVNHYKKLSSDGSNYGNTKVGI 153
Query: 193 ER------------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
E +D ++ HPTQKP AL ++ + T G +++D G T+
Sbjct: 154 EGGGQTDRFPTDVLYFQRDQKRFHPTQKPVALFEYLIKTYTNEGALVVDNCAGVATTAVA 213
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
A K +R+FI IE ++ ++ I +R+ +VQ
Sbjct: 214 AIKNKRNFIAIEKEEKWVKIGKQRLQNVQ 242
>gi|163868337|ref|YP_001609546.1| methyltransferase [Bartonella tribocorum CIP 105476]
gi|161017993|emb|CAK01551.1| methyltransferase [Bartonella tribocorum CIP 105476]
Length = 546
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 18/195 (9%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +K+I G+++ L+ L V I+ DPPYN + ++
Sbjct: 46 FDNKLIFGDNLLALKALEQEYTGKVKCIYIDPPYNTGNAFE--------------HYEDG 91
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKS 134
+ + R L +L +G++W+ + M+ + + +
Sbjct: 92 LEHSIWLSLMRDRLELLHHLLADDGSIWISIDDDEQAYLKVMMDEIFGRQNFINNIIWQK 151
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
P + F + H+ ++ + + +D P G
Sbjct: 152 KYAPQNDTKWFSDNHDFIMVYAKDKTIWRPYLLPRSSAMDARYKNPDNDPRGPWKPGDLS 211
Query: 195 LRNKDGEKLHPTQKP 209
++ + ++ P
Sbjct: 212 VKRVTLKDIYEIVTP 226
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
++ + + + T KPE L+ RI+ +T PGD+ILD F GSGT+GAVA K+ R +I I
Sbjct: 296 KREVKAFNSDHVFTTPKPERLMERIIQLATTPGDLILDSFAGSGTTGAVAHKMGRRWIMI 355
Query: 252 EMKQDYIDIATKRIAS 267
E+ + R+
Sbjct: 356 ELGEHCHTHIIPRLKQ 371
>gi|42780094|ref|NP_977341.1| type III restriction-modification system enzyme, M subunit
[Bacillus cereus ATCC 10987]
gi|42736012|gb|AAS39949.1| type III restriction-modification system enzyme, M subunit
[Bacillus cereus ATCC 10987]
Length = 669
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 76/228 (33%), Gaps = 28/228 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQL 57
+ + ++EN+ S K+ G+++ VL L S+D+I+ DPPYN +G
Sbjct: 91 VPNNDHNNLDENKKS----KNLFFTGDNLEVLRHLQNNYNNSIDMIYIDPPYNTGDDG-F 145
Query: 58 YRPDHSLVD--------AVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTL 102
PD D + D + ++ A+ F L +R+LK NG +
Sbjct: 146 IYPDKFEFDDETLKDMFGMNDKEFERLKSIQGTATHSAWLTFMYPRLWLAKRLLKENGVI 205
Query: 103 WVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + + +L ++ E ++ + +
Sbjct: 206 LLSIDDNEQANLTLLLNEIFGEGNKLPPFTWQNKKGGGNDSTHVAEETEVVLVYAKNINL 265
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
F + + + + + K G++ +P + P
Sbjct: 266 VPKLFESYNSEYVKRYKEEDAYGRFYW----DTFKRKSGKQYYPIEAP 309
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSD--WLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
K + +N + + RS SGS+ + N +++ KP L+
Sbjct: 342 KFVKNRAGEWNVHFKQRIPNGKKPRSILSDKGTTASGSQEILNYFSKEVFSNPKPTTLIE 401
Query: 215 RILVSSTKPGDIILDPFFGSGTSG------AVAKKLRRSFIGIEMKQDYIDI 260
+ T IILD F GS T+ A++ R FI ++ + I
Sbjct: 402 YFIEVFTDDKAIILDFFAGSATTADAVMKLNAAQQCDRKFILAQLNELTYTI 453
>gi|311105221|ref|YP_003978074.1| C-5 cytosine-specific DNA methylase 1 [Achromobacter xylosoxidans
A8]
gi|310759910|gb|ADP15359.1| C-5 cytosine-specific DNA methylase 1 [Achromobacter xylosoxidans
A8]
Length = 253
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 84/253 (33%), Gaps = 28/253 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ +L LP VD + DPPY + S +V K
Sbjct: 10 TVYCGDCREILPTLP--QVDAVITDPPYGQAYKVNTFYKGGSRESSVVQRNGK------- 60
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
T L + + + ++ + + ++ + + +
Sbjct: 61 ---TLRVLPNLHAEIDGDDEPF---DPSHLLDLAPSVLIWGAHKFGHLLPQGRLLVWDKV 114
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ A + G + + + + + +G +R
Sbjct: 115 PTGKIRSQGDGETAWTNVNPNGP---LRMFRLLWDGLCVGEGARHEVTAGQKR------- 164
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-FIGIEMKQDYIDI 260
HP QKPE L+ + + P ++ DP+ GSG++G A + F GIE + Y DI
Sbjct: 165 -HHPMQKPEILMRWSIEQAGFPRRLV-DPYMGSGSTGVAAVQTGCEAFFGIESQISYFDI 222
Query: 261 ATKRIASVQPLGN 273
A +RI + Q
Sbjct: 223 ACRRIEAAQRQQP 235
>gi|317123215|ref|YP_004097327.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
43043]
gi|315587303|gb|ADU46600.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
43043]
Length = 306
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 39/277 (14%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY- 81
++ + ++ L + P KS+ + DPPY + L W +F+ +
Sbjct: 11 LVHTDCLTWLRRRPEKSIHAVVTDPPY--GATEYTHEQQQKLRAGKGGVWRIPPAFDGHR 68
Query: 82 ------------------DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
F AW R L P + V + I L
Sbjct: 69 RAPLPRFTTMSRADLDYMHDFFYAWAEVLRPTLVPGAHVMVACNPLVSPYISMALTKAGL 128
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF--------NYDALKAAN 175
+IV R + NAHE + A+ P+++ +
Sbjct: 129 ERRGEIVRLVMTMRGGDRPK---NAHEEFVDATVMPRSQWEPWLLYREPLECRTVADNLR 185
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL------HPTQKPEALLSRILVSSTKPG-DIIL 228
+ + + +++ KL HP+ KP++ L ++ +S G IIL
Sbjct: 186 KYKTGALRRISDAQPFGDVIKSHPTRKLERQIANHPSLKPQSFLRAVVRASLPLGEGIIL 245
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
DPF GSG++ A A+ + IG+E +Y ++A + I
Sbjct: 246 DPFAGSGSTLAAAEAIGYQSIGLERDAEYFEVARQAI 282
>gi|315145889|gb|EFT89905.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX2141]
Length = 638
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 77/236 (32%), Gaps = 44/236 (18%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------GQLYRPD 61
E + + ++ I G+++ L+ L +D+I+ DPPYN + + + +
Sbjct: 67 EESVNFEKSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTQKE 126
Query: 62 HSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + + + D + L R +L G ++V +
Sbjct: 127 NDVSEGIIDEDGNRLVKNEKSNGRYHSDWLTMMYPRLKLARNLLSDTGVIFVSIDDNEQA 186
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ ++ + ++NP + + E +I + + N
Sbjct: 187 NLKLLMDEIFGEDNFIGNLSVENNPKGRKNAKFISVSSEFVILYAKKINESKFIENIPKR 246
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
E +++++G +H + K RILV K D++
Sbjct: 247 ST-------------------EMIKDENGNFVHNSGK------RILVGENKFNDVV 277
Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIE 252
D ++ + K L+ L + + D F GSGT+ + R FI
Sbjct: 403 DNREVFSSPKSTDLIKLFLTLFSSKNITVFDFFAGSGTTADSVMQLNAEDGGNRKFILGT 462
Query: 253 MK 254
+
Sbjct: 463 LD 464
>gi|165911275|gb|ABY74328.1| methyltransferase [Neisseria meningitidis]
Length = 543
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 18/194 (9%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPYN +G Y DKF
Sbjct: 104 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN-------------DKF- 149
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSN 135
+ + F + L + +L +G++W+ + + + + + S
Sbjct: 150 NHSTWLTFMKNRLEIAKTLLADDGSIWISLNDDEVHYAKVLCDEILGRDNFIANIIWHSK 209
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + HE +++ + K + +D +
Sbjct: 210 YTTSNDAKFISYQHENILFYAKDKSKFKIGGFSRTEKHNSSYKNPDNDPKGAWKATPLHA 269
Query: 196 RNKDGEKLHPTQKP 209
++ D + + + P
Sbjct: 270 KSGDEKNNYVIEFP 283
>gi|85716950|ref|ZP_01047914.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
gi|85696229|gb|EAQ34123.1| DNA methylase N-4/N-6 [Nitrobacter sp. Nb-311A]
Length = 423
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 38/251 (15%)
Query: 20 KDKIIKGNSI------SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ +++ G+S VL + L+ DPPY +N + V+
Sbjct: 174 RHRLLCGDSTIATDVEKVLAGVKP---HLMVTDPPY--GVNYDPAWRIRAGVNLNERKLG 228
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
K ++ + + AW L P +V + + L+ F + I+W K
Sbjct: 229 KVAN-DDRADWREAW------ALFPGTVAYVWHAGRYTSEVQQSLEAAGFEVRAQIIWAK 281
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + Y + + D + + W I
Sbjct: 282 DRFALSR------------GHYHWQHEPCWYAVRGTSSSHWSGDRKQSTLWTIN------ 323
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+DG H TQKP + R + +++ PG I +PF GSGT+ A+ RS IE+
Sbjct: 324 --AREDGGHGHGTQKPVECMRRPIENNSSPGQAIYEPFSGSGTTIIAAEMTGRSCSAIEL 381
Query: 254 KQDYIDIATKR 264
Y+D+A R
Sbjct: 382 DPAYVDVAVLR 392
>gi|15646208|ref|NP_208161.1| adenine-specific DNA methylase [Helicobacter pylori 26695]
Length = 809
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 68/318 (21%), Positives = 108/318 (33%), Gaps = 72/318 (22%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW------ 72
+IK + L L +++D I+ DPPYN Q N +Y + ++
Sbjct: 377 TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSSWLSMMENRLELA 436
Query: 73 -----DKFSSFEAYDAFTRAWLLACRRVLKPNG-------------TLWVIGSYHNIFRI 114
DK + F + D +A+L + G V N +
Sbjct: 437 RKLLNDKGAMFVSIDDNEQAYLKVLMDEVFNGGGGDNFVASISWKQFHSVKNDAANFSKN 496
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI--WASPSPKAKGYTF-NYDAL 171
+ +++ + N + +N L WA YTF N
Sbjct: 497 IEYILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPVWAKSGNNFSPYTFLNGKTW 556
Query: 172 KAANEDVQMRSDWLIPICSGSERL----RN------------------------------ 197
+ S + + R+ +N
Sbjct: 557 SPPSGTFWRYSIGTLKDMEQNNRIVFNGKNPMAKRYLSEVAEGRKSSTFWDGSEVGYNLN 616
Query: 198 --------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+G K+ KPEALL RIL STK D++LD F GSGT+ AVA K++R +I
Sbjct: 617 GDAEIKQLFNGNKVFNNPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYI 676
Query: 250 GIEMKQDYIDIATKRIAS 267
GIEM + + + R+
Sbjct: 677 GIEMGEHFESVILPRLKK 694
>gi|34495460|ref|NP_899675.1| DNA methyltransferase [Chromobacterium violaceum ATCC 12472]
gi|34101316|gb|AAQ57685.1| probable DNA methyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 298
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/291 (20%), Positives = 106/291 (36%), Gaps = 63/291 (21%)
Query: 22 KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
I + + L V + + PP+ Q + V
Sbjct: 28 LIFNMDVREAMGHLARAGVIVNCMVTSPPFYGQRDY-----------GVDGQIGLEEHPR 76
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSY--------HNI-------------------- 111
+ A A R VL NG+LWV H
Sbjct: 77 DFIANLVGCFEASRPVLAENGSLWVNLGDTYWSGKGEHKSGEGKQSARRFGLRPQDRTGD 136
Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
R +Q+ ++ + ND VW K NP+P+ R +HE +
Sbjct: 137 GELCKPKQLLLIPHRFAIAMQDHDWLVRNDNVWVKPNPIPDQVRDRCSMSHEYVFHLVK- 195
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
++ Y FN DA+ + S ++P E + + H + E L+ ++
Sbjct: 196 --SRWYYFNKDAV-----GRKSASGSVLPPPDTWEVAPARSSHQ-HKARFSEELVRIPIL 247
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++T PG ++LDPF GSGTS A+K IGI++K ++ ++ +++ S++
Sbjct: 248 ATTPPGGVVLDPFGGSGTSLVFARKHGFRAIGIDLKAEFCELMVEQLRSLE 298
>gi|78189355|ref|YP_379693.1| putative type II DNA modification enzyme (methyltransferase)
[Chlorobium chlorochromatii CaD3]
gi|78171554|gb|ABB28650.1| putative type II DNA modification enzyme (methyltransferase)
[Chlorobium chlorochromatii CaD3]
Length = 351
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/326 (15%), Positives = 102/326 (31%), Gaps = 77/326 (23%)
Query: 21 DKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD---SW 72
+ +I G++I+ L+ L +DL++ DPP+ N + S + + ++
Sbjct: 3 NLLIHGDNIAGLDYLLHQKQLKGKIDLVYIDPPFATGGNFTITNGRASTISNSRNGDIAY 62
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVW 131
+ + + F R +L R ++ +++V Y + M+ + +
Sbjct: 63 SDKLTGDDFINFLRKRILLLRELMSEKASIYVHIDYKIGHYVKIMMDEVFGIDNFRNDIT 122
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY--------------------------- 164
R NF + N + +++ + S
Sbjct: 123 RIKCNPKNFTRIGYGNIKDLILFYTKSSNPIWNEPTEKYSENDIVNLFPKITTNGRRYTT 182
Query: 165 --------TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA----- 211
T N + K + + E + + T P
Sbjct: 183 VPIHAPGETVNGKSNKPFKGMLPPQGRHWRTDVITLEHWDKEGLIEWSSTGNPRKIIFAD 242
Query: 212 ----------------------------LLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
LL I+ +S+ P I+LD F GSGT+ A
Sbjct: 243 EREGKRVQDIWEFKDPQYPIYPTEKNSDLLDLIITTSSNPNSIVLDCFCGSGTTLKSAHF 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
L+R +IGI+ I+ + + ++
Sbjct: 303 LQRQWIGIDQSPHAIEATINKFSDIK 328
>gi|23015918|ref|ZP_00055682.1| COG0863: DNA modification methylase [Magnetospirillum
magnetotacticum MS-1]
Length = 418
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 31/248 (12%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K +++ G+S V L L+ DPPY + + + V + T + +
Sbjct: 172 KHRLLCGDSTVATDVDRLLVGAKPHLMVTDPPY--GVEYDPSWRNQAGVSSTTRTGKVAN 229
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
A ++ AW L P +V + + L+ +F + I+W K
Sbjct: 230 DDRA--DWSEAW------ALFPGEVAYVWHAAIYAKTVADSLEANDFKVRAQIIWSKPRF 281
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ RG + N +
Sbjct: 282 VLG-RGDYHWQHEPCIYAVRK-----------------NGTGHWQGARDQATVWAIGSGG 323
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++D +H TQKP + R +++++ GD + +PF GSGT+ A+ R +E+
Sbjct: 324 DEDEATVHGTQKPVECMRRPILNNSAEGDAVYEPFTGSGTTVIAAETTGRVCFAMELNPA 383
Query: 257 YIDIATKR 264
Y+D+ R
Sbjct: 384 YVDVVIGR 391
>gi|291294974|ref|YP_003506372.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
ruber DSM 1279]
gi|290469933|gb|ADD27352.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
ruber DSM 1279]
Length = 629
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 19/157 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------QLYRPDHSL 64
++ II+G+++ VL+ L V +I+ DPPYN + L
Sbjct: 90 ENVIIEGDNLEVLKLLQQAYHGKVKMIYIDPPYNTGNDFVYPDDFREGIRQYLRFTGQLS 149
Query: 65 VDAVTDS---WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-N 120
D V + + + + L R +L+ +G ++V H + + ++
Sbjct: 150 EDGVRLTTTPEEGGRIHSRWLSMMYPRLQLARSLLRDDGVIFVSIDDHELHNLRAIMDEI 209
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + P+ F H+ L+
Sbjct: 210 FGEENFLATILWQKKYAPSNDTTDFSYTHDYLLSYVK 246
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 12/170 (7%)
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ N T + I + +N
Sbjct: 283 PWMSDNYTCNKTSEQRPNLYYPIIHPKTGKEIWPSPTRVWAYSREVHERNVSENRVW--W 340
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEA 211
+ + Y + D + + ++ GE T KP
Sbjct: 341 GLNQENETPRYKRFLSEVAGVVADTWWEHTDVGHTDEAKKEFKSLFGEDADAFDTPKPVR 400
Query: 212 LLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
LL R+L +T+P GDI+LD F GSGT G ++ R F+ +++
Sbjct: 401 LLKRLLQLATEPDAGDIVLDFFAGSGTLGQAVLEMNQEDGGDRRFVLVQL 450
>gi|118576298|ref|YP_876041.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
gi|118194819|gb|ABK77737.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
Length = 538
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 9/209 (4%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY--RPDHS 63
+ ++ N + + II GN++ L+ L ++ I+ DPPYN N Y DH
Sbjct: 1 MKKSYNPQKDSDNMIIHGNNLDALKSLLPNYRSRINCIYIDPPYNTGSNNWKYTDNVDHP 60
Query: 64 LVDAVTDSWDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + + E + L + +L +G +++ + + M+ +
Sbjct: 61 VFKSWLNKEIGIEDMSRHEKWLCMMWPRLQILKELLTDDGIIFISIDDNEYHHLRVMMDD 120
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + N + F +H+ ++ S K D
Sbjct: 121 MFGEDNFIATCVWEGGLKNDS-KYFSVSHDYILCYSKKKSLLSDKGTRWRHKKDGIDKIY 179
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ + + K P
Sbjct: 180 KQVEHLRKQYKDNYRKISSELKTWYKSLP 208
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 65/225 (28%), Gaps = 21/225 (9%)
Query: 64 LVDAVTDSWDKFSSF-EAYDAFTRAW---LLACRRVLKPNGTLWVIGSYHNIFRIGT--- 116
D + + + + Y R L + L N + Y+ + + G
Sbjct: 171 KKDGIDKIYKQVEHLRKQYKDNYRKISSELKTWYKSLPKNDPAFKHRHYNEVDKRGLYFP 230
Query: 117 --MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY------TFNY 168
+ +++ + R + N + ++ + +
Sbjct: 231 GDISWPGGGGPDYEVIHPITKKPVKVPVRGWLNPDKNVMEQQIADNRIHFGDDETTVPKI 290
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
E M S + + L K +++ ++ T IIL
Sbjct: 291 KRYLHETESKVMASVIYKDRRAAKQMLDKILSYNEFENPKDVSVIKDLISMVTPSDGIIL 350
Query: 229 DPFFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIATKRIAS 267
D F GSGT+ + R FI +E++ I +R+
Sbjct: 351 DSFAGSGTTAQAVLELNKEDGGNRRFILVELEDYADKITAERVRR 395
>gi|145629607|ref|ZP_01785404.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae 22.1-21]
gi|144978118|gb|EDJ87891.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae 22.1-21]
Length = 351
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 21/202 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---- 63
+ ++ +I+G+++ VL+ L + +I+ DPPYN +G +Y+ D
Sbjct: 88 NQKPENQNSENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRKFTPQ 147
Query: 64 -----------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + K +S A+ F L R +L+ +G +++ +
Sbjct: 148 QLVELGMDLEEAERVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFISIDDNEQA 207
Query: 113 RIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT-FNYD 169
++ + + + + VW+ N HE + S + K D
Sbjct: 208 QLKILCDEVFGEENFVAEFVWKSRQNKDNRNITGASIDHEYIFCYSKTNLYKALRGAERD 267
Query: 170 ALKAANEDVQMRSDWLIPICSG 191
+ +N D R +W G
Sbjct: 268 TSQYSNPDNDPRGNWASGNMVG 289
>gi|17545563|ref|NP_518965.1| hypothetical protein RSc0844 [Ralstonia solanacearum GMI1000]
gi|17427856|emb|CAD14546.1| putative dna modification methylase protein [Ralstonia solanacearum
GMI1000]
Length = 441
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/268 (16%), Positives = 79/268 (29%), Gaps = 52/268 (19%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
L F PPY Q N +D R + +G
Sbjct: 173 LCFTSPPYANQRNYTTG------------------GIADWDVLMRGVFGNV--PMAGDGQ 212
Query: 102 LWV-----IGSYHNIFRIGTMLQNL---NFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ V + + + + VW + MP R + E +
Sbjct: 213 VLVNLGLVHRDSEVVPYWDAWIAWMRTQGWRRFGWYVWDQGPGMPGDWMGRLAPSFEFVF 272
Query: 154 WASPSPKAKGYTFNYD-----------------------ALKAANEDVQMRSDWLIPICS 190
+ + T ++ + +
Sbjct: 273 HFNREARRPHKTVPCKFAGQDEHLRPDGTSTSMRGRDGIRGSWTHKGKLTQDTRIPDSVI 332
Query: 191 GSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
R + K G + HP P AL ++ + + GDI+ +PF GSGT+ A++ R
Sbjct: 333 RVMRHKGKIGRDIDHPAVFPVALPEFVIEAYSDAGDIVFEPFGGSGTTMLAAQRTGRLCH 392
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELT 277
+E+ +Y+D+A KR P + L
Sbjct: 393 SVEIAPEYVDVAIKRFQQNYPEAPVTLQ 420
>gi|260219729|emb|CBA26574.1| Type III restriction-modification system EcoP15I enzyme mod
[Curvibacter putative symbiont of Hydra magnipapillata]
Length = 565
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 18/176 (10%)
Query: 5 NSLAINENQNSIFEWKD-KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
+ N ++S + +II G+++ L+ L V+ I+ DPPYN G +Y
Sbjct: 26 KQYSFNAKEDSPANSTNNRIIHGDNLEALKSLLPEFEGKVNCIYIDPPYNTGNEGWVY-- 83
Query: 61 DHSLVDAVTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ ++ D W + S + + L R+L +G +V + +
Sbjct: 84 NDNVNDPKIKKWLGQVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLADDGIFFVSLDRNEM 143
Query: 112 FRIGTML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+L + + ++ N HE ++ + S G +
Sbjct: 144 ATFKLLLEEIFGAGNWVGEIVWRNVTDNNP--TNISLEHEYILCYAKSKNLIGPIW 197
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 64/207 (30%), Gaps = 12/207 (5%)
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW- 131
+K + + W + L P I ++ D+
Sbjct: 217 EKHKDLDELKSSYTEWYREHKSELWPFQDYKFIDHDGIYTGSRSVHNPGKEGYRYDVFHP 276
Query: 132 --RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-QMRSDWLIPI 188
+K+ P R + L+ + + + + ++ S +
Sbjct: 277 ETKKACKQPLMGYRFPPETMQKLLDEDRILFGEDESKLIELKLYVKDYKAKLASLIELDG 336
Query: 189 CSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK--- 243
+G+ ++N DG K KP LL + K IILD F GSGT+ K
Sbjct: 337 RTGTIEIKNIFSDGSKPFDYPKPSILLEDLFGFVMKSESIILDSFAGSGTTAHAVLKLNA 396
Query: 244 ---LRRSFIGIEMKQDYIDIATKRIAS 267
R FI EM I +R+
Sbjct: 397 QDGGNRRFILCEMMDYAESITAERVRR 423
>gi|330507997|ref|YP_004384425.1| DNA methylase [Methanosaeta concilii GP-6]
gi|328928805|gb|AEB68607.1| DNA methylase [Methanosaeta concilii GP-6]
Length = 687
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 90/246 (36%), Gaps = 42/246 (17%)
Query: 18 EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP----------DHSL 64
++++ +I G++ V+ L +DLI+ DPP+++ + + P D SL
Sbjct: 77 DFRNMLIWGDNKLVMASLLKDFRGKIDLIYIDPPFDVGADFTMQVPLGDFDDVAEKDQSL 136
Query: 65 VD--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ A D W + +Y L+ +L +G + V I +L +
Sbjct: 137 LEMVAYRDMWGNGTD--SYLNMIYERLVLMHDLLAESGHILVHCDQRVNVYIRLLLHEVF 194
Query: 123 --FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
LN+IVW++++ G +N+ + K+ Y F + ++E ++
Sbjct: 195 GEEHFLNEIVWQRTSAGKTVSGNLPKNSDYIIW----CTKSDTYQFFGFRGELSDEMRKL 250
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + DG + TQ I+ +S D G
Sbjct: 251 YNKD------------DGDGRGAYTTQ-------PIIKTSNPGPQTTYDYTDNRGRVWPC 291
Query: 241 AKKLRR 246
KK R
Sbjct: 292 PKKGWR 297
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 54/268 (20%), Positives = 96/268 (35%), Gaps = 24/268 (8%)
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
G + +++ N + + ++ +E+ + + +T
Sbjct: 256 GDGRGAYTTQPIIKTSNPGPQTTYDYTDNRGRVWPCPKKGWRFNESRMHKLENDNRLVFT 315
Query: 166 FNYDALKAANEDVQMRSDWLIPICS-GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
E ++ S L + +PTQKPE L+SRI+ + TK G
Sbjct: 316 DVIREKYYLQEREELGSQLPNIWTDISGNALGYSKEAQGYPTQKPEKLVSRIIEALTKEG 375
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK-- 282
D++ D F GSGT+GAVA++L R +I ++ + I + KR+ +Q +
Sbjct: 376 DLVADFFCGSGTTGAVAERLGRRWIMCDLGRFAIHTSRKRLIDLQRRLQADGQPYRAFDV 435
Query: 283 --------------------RTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTL 322
R RV L P L +G V + +L
Sbjct: 436 YNLGRYERQWWQRERLQGFDRDHRRVVLGFYRADPLANPTAWLHGRKGGAFVYVDSIDSL 495
Query: 323 ISGTELGSIHRVGAKVSGSE-TCNGWNF 349
++ E+ ++ R + G E C W F
Sbjct: 496 LTREEVRAVARAAREAGGKEVHCLAWEF 523
>gi|295100748|emb|CBK98293.1| DNA modification methylase [Faecalibacterium prausnitzii L2-6]
Length = 244
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/249 (19%), Positives = 81/249 (32%), Gaps = 32/249 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + ++ P K DL DPPY + Y V + +D +
Sbjct: 16 DCMEGMKAFPDKLFDLAVVDPPYFSGPEHRGYYGSRVSKTGVHRDYPITP---KWDVPGK 72
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
RV K + + + +
Sbjct: 73 DCFNELLRVSK---------------------HYIIWGCNYFDYHFAPGRIVWDKCNGGT 111
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
+ + I A+ + N +Q +S I G+ + + +++HPT
Sbjct: 112 SFSDCEIAATDLFDSVRLFRYM-----WNGMMQGKSIREGHIQQGN---KILNEKRIHPT 163
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
QKP AL S I KPG +ILD GSG+S A F G E+ Q+Y + +R
Sbjct: 164 QKPVALYSWIFQKYAKPGQMILDTHVGSGSSRIAAYDAGLYFTGFEISQEYFLLQKERYK 223
Query: 267 SVQPLGNIE 275
+ ++
Sbjct: 224 AYTAQTDMF 232
>gi|254900823|ref|ZP_05260747.1| hypothetical protein LmonJ_13446 [Listeria monocytogenes J0161]
Length = 632
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 68/209 (32%), Gaps = 18/209 (8%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------GQLYRPD 61
E + ++ I G+++ L+ L +D+I+ DPPYN + + + +
Sbjct: 67 EESVNFEGSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTKKE 126
Query: 62 HSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ L + + D + L R +L +G ++V + I
Sbjct: 127 NDLSEGILDEEGDRLVKNEKSNGRYHSDWLTMIYPRLKLARNLLSDSGIIFVSIDENEIA 186
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ +L + P + HE ++ A+ + + K
Sbjct: 187 NLELLLTEIFGENNLAGTIVWDKRNPKGDSKGVSMQHEYIVAAAKNINIFSEFKEFKRPK 246
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGE 201
E + +S + + L + + E
Sbjct: 247 KNAEIILNKSKEIFKKINDKFTLSDANEE 275
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/296 (14%), Positives = 85/296 (28%), Gaps = 37/296 (12%)
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + D + + E Y + + L G ++ S +
Sbjct: 259 IFKKINDKFTLSDANEEYRKWINSKKDLSGGEKAYSKLDEKGNVYREVSMAAPDKPEKRS 318
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
L + S P +R + N L N
Sbjct: 319 HRPLTHPLTGK--QTSVPAKGWRYIDKTMDKLLQQDLVIFGSDEKTIPNQKYLLVENMME 376
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
++ S + + + + + KP L+ +++VS+TK ++ILD F GSGT+
Sbjct: 377 KLPSLYYNGASGSGDITKIGFKQNIFDNPKPVDLIRQLIVSTTKKNEVILDFFAGSGTTA 436
Query: 239 AVAKKL------RRSFIGIEMKQDYIDIATKRIASVQPLGN----------IELTVLTGK 282
+ R FI + ++ + + R + ++ +G
Sbjct: 437 DAVMQTNSEDGGNRKFIVATLDEETPENSEARKVGYSTIDQISRERIRRAAEKIGDTSGF 496
Query: 283 RTEPRVAFNLLVERGLIQPGQI----------LTNAQGNIS---ATVCADGTLISG 325
RT + L E G++ + + V DG L
Sbjct: 497 RTLKVDSTG-LKEDVFKTAGELDQVDLLQDIDNHSDNRSDYDLLYDVLVDGALEYN 551
>gi|119510950|ref|ZP_01630072.1| Site-specific DNA-methyltransferase (adenine-specific) [Nodularia
spumigena CCY9414]
gi|119464389|gb|EAW45304.1| Site-specific DNA-methyltransferase (adenine-specific) [Nodularia
spumigena CCY9414]
Length = 633
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 31/228 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ I+G+++ VL+ L V +I+ DPPYN + +D + + S
Sbjct: 94 NLFIEGDNLEVLKLLRNSYSGQVKMIYIDPPYNTGNDFIYPDNYTDTLDNYLELTGQKDS 153
Query: 78 ---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
A+ + L R++LK +G ++V H + + ++
Sbjct: 154 EGNLQTSNPETSGRYHSAWLSMMYPRLFLARQLLKEDGVIFVSIDDHEVHNLRLLMNEIF 213
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP------KAKGYTFNYDALKAAN 175
V + P F H+ ++ S K + + N
Sbjct: 214 GEENFVACVCWQKKYAPANDTVDFSATHDFILVYSKQRQFLDSGKPIALIGRMERTEEQN 273
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
+ + + + S+ L NK E Q+P L I+ T+
Sbjct: 274 KLYKNPDNDPRGLWKASDYLCNKSAE-----QRP-NLYYPIIHPKTEE 315
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 12/171 (7%)
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET--LIWASPSPKAKGYTFNYD 169
R ++ +I ++ + R QN + + K Y
Sbjct: 300 QRPNLYYPIIHPKTEEEIWPSRTAVWRYSKARHQQNVQDNRVWWGLNQENKVPAYKRFLS 359
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGE--KLHPTQKPEALLSRILVSSTKPG--D 225
+ D + + +++++ E + T KP L+ RI+ ST D
Sbjct: 360 EVGGIISDTWWQHKDVGHNDEAKKQIKSLFPEASQSFDTPKPTRLIKRIVELSTNTDSTD 419
Query: 226 IILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASVQP 270
IILD F GS T+ +L R FI I++ Q + I+ +
Sbjct: 420 IILDFFAGSATTAQAVLELNHEDTGDRRFILIQLPQKTYNPQFTTISDISK 470
>gi|83309462|ref|YP_419726.1| modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
gi|82944303|dbj|BAE49167.1| Modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
Length = 423
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 87/247 (35%), Gaps = 31/247 (12%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V L L+ DPPY ++ + + A T +
Sbjct: 175 HRLLCGDSTVVTDVDRLLAGAKPHLMVTDPPYGVEYDPEWRNQAGVSSSARTGK----VA 230
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ ++ AW L P +V + + L+ +F I I+W K+ +
Sbjct: 231 NDDRADWSEAW------ALFPGEVAYVWHAAIFAKTVADSLEANDFKIRAQIIWSKNRFV 284
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
RG + + A A + +
Sbjct: 285 LG-RGDYHWQHEPCIYAVRKNATGHWQGARDQATIWAIGNNG-----------------D 326
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+D +H TQKP + R +++++ GD + +PF GSGT+ A+ R +E+ Y
Sbjct: 327 EDEATVHGTQKPVECMRRPILNNSAEGDSVYEPFAGSGTTVIAAETTGRVCFALELNPAY 386
Query: 258 IDIATKR 264
D+ R
Sbjct: 387 ADVTVGR 393
>gi|320326869|gb|EFW82902.1| adenine specific DNA methylase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 554
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 10/151 (6%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL-------VDAVTD 70
++II G+++ L+ L VD I+ DPPYN G Y + + + V
Sbjct: 43 NRIIHGDNLEALKSLLPEFEGQVDCIYIDPPYNTGNEGWAYNDNVNDPKLKKWLGEVVGK 102
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ S + + + ++L G ++V + R+ +L+ +
Sbjct: 103 EGEDLSRHDKWLCMMYPRIKLLHKLLSNTGVIFVSLDENEFCRMRLVLEEIFGESNFLAQ 162
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ ++ HE LI + A
Sbjct: 163 IIVQSNKRGQTYKQIAKTHEYLICFGKTKDA 193
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 16/165 (9%)
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
++ T + + + G+ K + + + D G+ L +
Sbjct: 289 SNNTQMLFAKQTRDGGWRVFEKYRKGSVKAKSIWFDTKHISEQGTTALNRLGLGEQFQFP 348
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIA 261
KP AL+ + +T+ +ILD F GSGT+ R FI IE + +
Sbjct: 349 KPVALIEDCISLATEDDALILDSFAGSGTTAEAVLNLNAKNGGNRRFILIETLEYAETLT 408
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
+R+ V+ G T P++ L + G+ L
Sbjct: 409 AERVR----------RVMAGYETGPKLTAGLGGQFDFFTVGEPLF 443
>gi|160894867|ref|ZP_02075641.1| hypothetical protein CLOL250_02417 [Clostridium sp. L2-50]
gi|156863298|gb|EDO56729.1| hypothetical protein CLOL250_02417 [Clostridium sp. L2-50]
Length = 506
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 18/203 (8%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
+ ++ +I G+++ L+ L V I+ DPPYN
Sbjct: 30 SKSYGDPDTENMLIHGDNLLALKALENKFRGRVKCIYIDPPYNTGSAFA----------- 78
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWIL 126
+D + + R LL + +L +GT+W+ + +
Sbjct: 79 ---QYDDNLEHSIWLSMIRKRLLILKELLSEDGTIWISIDDDEQAYLKVLCDEIFMRSNF 135
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
V + P + ++H+ ++ + + + +D
Sbjct: 136 VSNVIWEKKFSPQNDAKWLSDSHDFILVYAKNKNLWKPNLLPRTAGMNSRYKNPDNDPRG 195
Query: 187 PICSGSERLRNKDGEKLHPTQKP 209
P S R G +P P
Sbjct: 196 PWTSSDFTARTYSGNTDYPITTP 218
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ ++ + E T KPE L+ RIL +TKPGDIILD F GSGT+ AVA K+ R +IG+
Sbjct: 288 KKEVKQINPEDPFATPKPEKLIERILEIATKPGDIILDSFLGSGTTIAVAHKMNRRWIGV 347
Query: 252 EMKQDYIDIATKRIASVQPLGN 273
E+ + + R+ V +
Sbjct: 348 EIGEQAYNQCKLRLDKVIDGND 369
>gi|328953515|ref|YP_004370849.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
gi|328453839|gb|AEB09668.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 546
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 39/184 (21%)
Query: 16 IFEWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAV 68
+ W++++ G+++++L + LP++SVDLI+ DPP+N + + + S + A
Sbjct: 1 MNAWQNQLYFGDNLNILREYLPSESVDLIYLDPPFNSKATYNVLFAEKSGDASVAQITAF 60
Query: 69 TDSWDKF-------------------------------SSFEAYDAFTRAWLLACRRVLK 97
D+W + AY L+ RVLK
Sbjct: 61 DDTWHWGREAEEAFHDLITTGPVKLSHLIAAFRSFLGQNDMMAYIVMMAIRLVELHRVLK 120
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNF-WILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
P G++++ I +L ++ + + K + RF +H+T+ + +
Sbjct: 121 PTGSIYLHCDPTASHYIKLLLDSIFEVKNFRNEIIWKRSQPKAHAVTRFSRSHDTIFFYA 180
Query: 157 PSPK 160
S K
Sbjct: 181 KSEK 184
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 24/228 (10%)
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRI 114
+ R ++ KF+ + Y + ++ R ++P G ++ +G N R
Sbjct: 168 RFSRSHDTIFFYAKSEKTKFA--QQYSRYKEDYVKKFYRHIEPETGRIFQLGDLTNPNRN 225
Query: 115 GTMLQNLNF----WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
L ++ G + T D
Sbjct: 226 RPNLTYEFPPGSGITRVWRWTQEKMMKAWKDGMIVIPEQGGVPRLKRYFNELKGTLLTDI 285
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
D S E L+ +PTQKPEALL RI+ +S+ GD++LDP
Sbjct: 286 WV----------DIEHLHGSNKEWLK-------YPTQKPEALLYRIIKTSSNEGDVVLDP 328
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
F G GT+ VA++L+R +IGI++ I + KR+ + V
Sbjct: 329 FCGCGTATVVAERLKRRWIGIDITHLAITLIKKRLRDTFGESLSDFRV 376
>gi|330882713|gb|EGH16862.1| adenine specific DNA methylase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 495
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 10/151 (6%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL-------VDAVTD 70
++II G+++ L+ L VD I+ DPPYN G Y + + + V
Sbjct: 43 NRIIHGDNLEALKSLLPEFEGQVDCIYIDPPYNTGNEGWAYNDNVNDPKLKKWLGEVVGK 102
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ S + + + ++L G ++V + R+ +L+ +
Sbjct: 103 EGEDLSRHDKWLCMMYPRIKLLHKLLSNTGVIFVSLDENEFCRMRLVLEEIFGESNFLAQ 162
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ ++ HE LI + A
Sbjct: 163 IIVQSNKRGQTYKQIAKTHEYLICFGKTKDA 193
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 16/165 (9%)
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
++ T + + + G+ K + + + D G+ L +
Sbjct: 289 SNNTQMLFAKQTRDGGWRVFEKYRKGSVKAKSIWFDTKHISEQGTTALNRLGLGEQFQFP 348
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIA 261
KP AL+ + +T+ +ILD F GSGT+ R FI IE + +
Sbjct: 349 KPVALIEDCISLATEDDALILDSFAGSGTTAEAVLNLNAKNGGNRRFILIETLEYAETLT 408
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
+R+ V+ G T P++ L + G+ L
Sbjct: 409 AERVR----------RVMAGYETGPKLTAGLGGQFDFFTVGEPLF 443
>gi|302530387|ref|ZP_07282729.1| predicted protein [Streptomyces sp. AA4]
gi|302439282|gb|EFL11098.1| predicted protein [Streptomyces sp. AA4]
Length = 622
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 62/202 (30%), Gaps = 23/202 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------- 55
+ E K+ I+G+++ L+ L V+LI+ DPPYN +
Sbjct: 90 PVREESVDFDTTKNLFIEGDNLDALKLLQESYLGKVNLIYIDPPYNTGNDFIYNDDFAQK 149
Query: 56 --------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ + + A TD+ +F S + + L R +L NG + +
Sbjct: 150 TAEYLEKSGQSDENGTRLIANTDTNGRFHS--DWLSMMYPRLKLARNLLSQNGFICISID 207
Query: 108 YHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ +L + + + N + + H+ + +
Sbjct: 208 DGEAAPLKAILDEVFGRKNFIATIVWQKRYVANVTAKYISDMHDFVHVYARDALQASVQK 267
Query: 167 NYDALKAANEDVQMRSDWLIPI 188
+ + SD P
Sbjct: 268 WALSDDQLSAYRNPDSDTRGPW 289
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 52/177 (29%), Gaps = 10/177 (5%)
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--VQMRSDWLIPICSGS 192
NP PN R + T NE W +G
Sbjct: 315 NPPPNRYWRCNEAQFLEWDADGRIWWGVDGTARPMLKSFLNEKDATTTPHTWWEYEFAGH 374
Query: 193 ERLRNKDGEKLH------PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ + ++L T KP L+SRI+ + I++D F GS T K
Sbjct: 375 NKEATLEMKELFGGASPFDTPKPVRLMSRIIEAFGGRDGIVMDFFAGSSTFAHATLKSNA 434
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP-RVAFNLLVERGLIQPG 302
G + + + R S + + R R LL E G I G
Sbjct: 435 E-NGTNLSYIQVQVPEGRKISDGSQLSEFSNISQLSRERIRRAGRKLLEESGKIDVG 490
>gi|254442327|ref|ZP_05055803.1| DNA methylase [Verrucomicrobiae bacterium DG1235]
gi|198256635|gb|EDY80943.1| DNA methylase [Verrucomicrobiae bacterium DG1235]
Length = 330
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/306 (18%), Positives = 98/306 (32%), Gaps = 66/306 (21%)
Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ K+++G+S +L+ P + V L F PY ++ + +
Sbjct: 45 KSLHKLLQGDSFELLDLFPPECVQLHFTSIPYGSIVDYT----------GSGLEFGSEKT 94
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV------------------------IGSYHNIFR 113
++ + +L A R+ K G + + I + + R
Sbjct: 95 YQKFLDRLELFLAASFRLCKQGGCVVLNARGLSSGSGCGPVGSKTFRGRSKIAAKRGVGR 154
Query: 114 -------------------IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
IG + + F D +W K+ +P R HE LI
Sbjct: 155 QSNFAEGFRRKDFIDLPGDIGRLGSKVGFTWRGDDIWEKTRCLPESVKDRHARVHENLIL 214
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
+ Y F+ L+ +S RL HP L
Sbjct: 215 LTK---GPLYKFDRSRLRQL-GSKMDQSVL---------RLPTSTANYGHPATFSPILAE 261
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
+ ++T GD++LD F G G++ A K R I +E+ D+ A R+
Sbjct: 262 HYIYAATDEGDVVLDAFGGVGSTALAALKHGRHSITMELSHDFFGKALDRLEYFASGFQG 321
Query: 275 ELTVLT 280
E+ V
Sbjct: 322 EVKVGK 327
>gi|60680649|ref|YP_210793.1| putative modification enzyme of type III restriction-modification
system [Bacteroides fragilis NCTC 9343]
gi|60492083|emb|CAH06846.1| putative modification enzyme of type III restriction-modification
system [Bacteroides fragilis NCTC 9343]
Length = 635
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/223 (14%), Positives = 74/223 (33%), Gaps = 23/223 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD--- 61
+ E+ K+ I+G+++ VL+ L V +I+ DPPYN + +
Sbjct: 91 PVVEDSMDWDNTKNIYIEGDNLEVLKLLQRSYMGKVKMIYIDPPYNTGNDFVYHDDFART 150
Query: 62 --------------HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ TD+ KF S + + + LL R +L +G +++
Sbjct: 151 AAEEDLEAGSVDELGNRFRKNTDTNGKFHS--DWCSMIYSRLLVARSLLTEDGVIFISID 208
Query: 108 YHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + + + + P + F +H+ ++ + + +
Sbjct: 209 DNEQRNLKNICDEVFGSSNFLAQIVWERAYSPINLMKHFSPSHDYVLCYAKNLDSAVCKG 268
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ +A N +D + + E ++ P
Sbjct: 269 IARSSEADNRYTNPDNDPRGVWKASDLSVGPAVEENIYTITTP 311
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFI 249
+ DG+K+ KP L+ RI+ + IILD F GS T+ + R FI
Sbjct: 387 KLFDGKKVFDYPKPVELIKRIISLYSDSNSIILDFFSGSATTAHAVMEQNALDGGCRQFI 446
Query: 250 GIEMKQDY 257
+++++D+
Sbjct: 447 MVQLEEDF 454
>gi|325982147|ref|YP_004294549.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
AL212]
gi|325531666|gb|ADZ26387.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
Length = 565
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 22/178 (12%)
Query: 19 WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L A+ V IF DPPYN +D
Sbjct: 45 FDNRLIFGDNLLALKALEAEFAGKVKCIFIDPPYNTGSAFT--------------HYDDG 90
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ + R L RR+L +GTLW+ + + + V +
Sbjct: 91 VEHSIWLSLMRDRLEIIRRLLSEDGTLWITIDDNEAHYLKVLCDEVFGRVNFVANVVWQK 150
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGY----TFNYDALKAANEDVQMRSDWLIPI 188
P ++H+ ++ + + + K N D R W
Sbjct: 151 AYGPRSNAHLISDSHDHILVFAKDKPKASFALLERSDEQTAKYRNPDNDPRGPWKPEN 208
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 46/95 (48%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
D + S +R + T KPE+LL RI+ +T D++LD F GSGT+GA
Sbjct: 295 WLHDEVGHNQDASREIRTLFPDDAFGTPKPESLLRRIIHLATNSNDLVLDSFAGSGTTGA 354
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
VA K+ R +I +E+ + R+ V +
Sbjct: 355 VAHKMGRRWIMVELGEHCHTHIIPRLQKVIDGEDQ 389
>gi|262201401|ref|YP_003272609.1| DNA methylase N-4/N-6 domain-containing protein [Gordonia
bronchialis DSM 43247]
gi|262084748|gb|ACY20716.1| DNA methylase N-4/N-6 domain protein [Gordonia bronchialis DSM
43247]
Length = 345
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 105/342 (30%), Gaps = 105/342 (30%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+++I+ G++++ L++LP S+D + A PPY + D E
Sbjct: 8 RNRIVIGDALTRLQELPDSSIDCVVASPPYFRLRDYNA---------------DGQLGLE 52
Query: 80 AYDAFTRAWL----LACRRVLKPNGTLWVIGSYHNI----------------FRIGTMLQ 119
++ L R+L P GT W+ R+ L
Sbjct: 53 SHVDQCVDNLAAISEQAGRILVPTGTFWLNVGDTYSGHASQGAARKSLLMAPERLALRLH 112
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG-------YTFNYDALK 172
+ + I N IVW K NP+P+ R +E + + P +
Sbjct: 113 HDGWLIRNKIVWAKPNPVPSSVRDRLNCTYEVIYVLARQPHYFFDLDAIREPLRTARSST 172
Query: 173 AANEDVQMRSDWLIPICSG-------------------------SERLRNKDGEKLHPTQ 207
AN++ Q + +G + H
Sbjct: 173 RANDEGQATTREAWRGPNGMAATGLQTLKAQGRAGHPLGKNPGDVWTITPGGYRGAHHAI 232
Query: 208 KPEALLSRILVSSTK--------------------------------------PGDIILD 229
P L R++ + ++LD
Sbjct: 233 FPLRLAERMIAAGCPEARCTRCRRPWTRRVIRALGGTATRAAITPTCQCNADHEPGLVLD 292
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
PF GSGT+ A+ L+R + GIE+ D+ A RIA+ +
Sbjct: 293 PFMGSGTTAIAAENLKRDWYGIELNPDFAAAARDRIATARRH 334
>gi|227504294|ref|ZP_03934343.1| possible adenine-specific DNA-methyltransferase [Corynebacterium
striatum ATCC 6940]
gi|227199133|gb|EEI79181.1| possible adenine-specific DNA-methyltransferase [Corynebacterium
striatum ATCC 6940]
Length = 437
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 5/166 (3%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
QN + + I +G+++ L+ L ++ D+I+ DPPYN +
Sbjct: 58 QNGESDSPNTIFEGDNLDALKVLGSEGFRADVIYIDPPYNTGKEFVYTDNYRRRRKMGSG 117
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDI 129
S+ ++ + + L R +LK G ++V + ++
Sbjct: 118 SYGQW--HAEWLSMMYPRLFLARGILKETGFIFVSIGEDECANLRKIMDEIFGEDCFAGQ 175
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ K + HE ++ + SP G+ + A + N
Sbjct: 176 LIWKKGGTGKNDSKYAVVEHEYILCYAKSPDNPGFNVDEGAHTSTN 221
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
+ KP L+ ++ + P ++LD F GSGT+ + RSF +++
Sbjct: 334 VFEFPKPVRLIKHLVAIAGGPNAVVLDFFAGSGTTAQAVLELNAEDSGNRSFHLVQL 390
>gi|284048425|ref|YP_003398764.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
DSM 20731]
gi|283952646|gb|ADB47449.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 416
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 39/253 (15%)
Query: 20 KDKIIKGNSI--SVLEKLPAKSVD--LIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWD 73
K +++ G+S EKL V L+ DPPY NLQ + D
Sbjct: 168 KHRVLCGDSTKPESYEKLLDG-VKPNLVLTDPPYLVNLQSTSGKIKN------------D 214
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ E Y F + V+ + +++V + ++ F + ++W+
Sbjct: 215 DLNDQEGY-EFLKKAFSCFHDVMAQDASIYVFYATMKARVFYDAFEDAGFKVGAGLIWK- 272
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P R N + K Y +
Sbjct: 273 KPKAPFMRTDWKFNMEPIIFGWRKDGKHNWYGDQKQKAVFEFDG---------------- 316
Query: 194 RLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
++N + HP+ KP +L+ ++ S++ ++LD F GS ++ +L R G+E
Sbjct: 317 -IKNSKEDGFGHPSSKPVPMLAYLIKLSSQINGVVLDGFLGSASTLMACDQLGRICYGVE 375
Query: 253 MKQDYIDIATKRI 265
++ ++D+A KR
Sbjct: 376 LEPKFVDVAVKRY 388
>gi|168183994|ref|ZP_02618658.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
gi|237794621|ref|YP_002862173.1| DNA methylase [Clostridium botulinum Ba4 str. 657]
gi|182672994|gb|EDT84955.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
gi|229262760|gb|ACQ53793.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Ba4 str.
657]
Length = 268
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/279 (17%), Positives = 103/279 (36%), Gaps = 27/279 (9%)
Query: 14 NSIFEWKDKIIKGNSISVLEK--LPAKSVDLIFADPPYNLQL-----------NGQLYRP 60
+ + K ++ ++ ++ +P L+ AD PYN+ G
Sbjct: 2 ENNKKIKTELYN-DNFQNYKRYNIP--KAQLVIADIPYNIGKNAYGSNPEWYIGGNNKNG 58
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + D+ + Y F L+ + + + V S+ I + +
Sbjct: 59 ESKKAGKTFFNTDENFNIAEYFHFCNRLLIKEPKEKGKSPAMIVFCSFEQIPTVIEYGKK 118
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
F + + K+ + ++ A+ D L N +
Sbjct: 119 HGFKNSYPLFFIKNYSAQVLKANMK------IVGAT----EHAVVLYRDKLPKFNNGKKE 168
Query: 181 RSDWLIPI-CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ +R K+ K+HPTQKP ALL +++ T GD+++DP GSG++
Sbjct: 169 TGKGKMIFNWFEWKRDSKKEYPKVHPTQKPIALLKQLIEIFTDEGDVVIDPVAGSGSTLR 228
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
+L RS G E+ +++ A +++ G +L++
Sbjct: 229 ACMELNRSSYGFEVSKEFYKKAQEQMLIKNKTGCEQLSI 267
>gi|26251181|ref|NP_757221.1| hypothetical protein c5373 [Escherichia coli CFT073]
gi|227885209|ref|ZP_04003014.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Escherichia coli 83972]
gi|300973669|ref|ZP_07172321.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
gi|301048253|ref|ZP_07195287.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
gi|26111613|gb|AAN83795.1|AE016771_306 Hypothetical protein c5373 [Escherichia coli CFT073]
gi|227837816|gb|EEJ48282.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Escherichia coli 83972]
gi|300299875|gb|EFJ56260.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
gi|300410696|gb|EFJ94234.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
gi|307556542|gb|ADN49317.1| putative type III restriction-modification system methylation
subunit [Escherichia coli ABU 83972]
gi|315293251|gb|EFU52603.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
Length = 670
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/215 (13%), Positives = 64/215 (29%), Gaps = 19/215 (8%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG------------ 55
E + K+ I+G+++ L+ L + +++ DPPYN +
Sbjct: 99 EESVNFDTTKNIFIEGDNLDALKLLQENYLGKIKMVYIDPPYNTGNDFVYADDFVDEVSE 158
Query: 56 QLYRPDHSLVDAVTDSWDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
R + + + + +S + + + L R +L+ +G + + +
Sbjct: 159 FFLRSNQVDREGNRLTANPETSGRFHSDWLSMMYSRLKLSRNLLRDDGLIVIHIDENEYP 218
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ +L + N P HE + + T + K
Sbjct: 219 NLEKLLAEIYGEKNNLGTIVWDKRNPKGDATGVAQQHELICIYCKDREFFKTTCEFQRPK 278
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
N + I G + + K Q
Sbjct: 279 E-NAGKMLAKAKQILSKEGGVTEKARKEYKDWVNQ 312
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ NG ++ V ++ N F L V K P+P R
Sbjct: 319 EKAYNQIDDNGDVFRPVSMAWPN----KKKAPEDYFIPLIHPVTGKECPVPERGWRNPPA 374
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ L+ + N+++ + + GS+ D + T
Sbjct: 375 TMQELLKSGLIIFGPDEKTQPTRKYRLNDNL-FENIPSLLYYGGSDDALLADLKIPFDTP 433
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP + R++ S K DI++D F GS T+ R FI +++
Sbjct: 434 KPVQVAKRLIQSICKNDDILIDFFAGSCTAAHALMLLNAEDGANRRFIMVQL 485
>gi|308234572|ref|ZP_07665309.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae DSM 15829]
Length = 637
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 18/177 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ + IIKGN++ L L V I+ DPPYN Q + + +++
Sbjct: 185 NDNDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTQND--------------SFNYN 230
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWR 132
+ + F + L R++L+ +GT+W+ H + + + N D +
Sbjct: 231 DSFNHSTWLTFMKNRLELARKLLREDGTIWISCDDHESHYLKVLTDDVFNRDNFIDEIVW 290
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ P + +H+ ++ + + AN + +
Sbjct: 291 QRAYAPINLKKTLSRSHDIILVYAKNLDPSFTLNKLPRSAEANARYKNPDNDPRGPW 347
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G ++ + + T K E L+ RIL +T GD++ D F GSGT+ AVA K+ R +IG
Sbjct: 437 GKREIKALHFDSIFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAAVAHKMGRRYIG 496
Query: 251 IEMKQDYIDIATKRIAS 267
+E DI +R+
Sbjct: 497 VEQMDYIQDITVERLKK 513
>gi|135252|sp|P08763|T3MO_BPP1 RecName: Full=Type III restriction-modification system EcoPI enzyme
mod; Short=M.EcoPI; AltName: Full=EcoPI
methyltransferase
gi|15139|emb|CAA29614.1| unnamed protein product [Enterobacteria phage P1]
Length = 646
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 23/228 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ K LA ++ N E K+ +IKG+++ VL+ + + V++I+ DPPYN +
Sbjct: 72 LPPKTLLAEDKTHNQQEENKNSQNLLIKGDNLEVLKHMVNAYAEKVNMIYIDPPYNTGKD 131
Query: 55 GQLYRPDHS----------------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
G +Y D + + SS A+ F L R +LK
Sbjct: 132 GFVYNDDRKFTPEQLSELAGIELDEANRILEFTTKGSSSHSAWLTFIYPRLYIARELLKE 191
Query: 99 NGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+G +++ + ++G + + N N F + HE + +
Sbjct: 192 DGVIFISIDDNEDKQLGLLCDEVFGQGNFVAKLPTIMNLKGNHDNFGFSDTHEYIYVYAK 251
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ ++ L +R K P
Sbjct: 252 NKDVCSLGQFDIDESEVEKEWDEDEYGLFKRADTLKRTGQDASRKSRP 299
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 25/207 (12%)
Query: 66 DAVTDSWDKFSSFEAYDAF-----TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V WD+ + Y F + R +P G V + N + +
Sbjct: 266 SEVEKEWDE----DEYGLFKRADTLKRTGQDASRKSRPKGWFPVFINSENKVYVT---DD 318
Query: 121 LNFWILNDIVWRKSNPM-----PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+D V +P ++ ++ + LI Y AL
Sbjct: 319 DKPLNEDDYVLYPVSPTGEELSWSWGKKKINDEFYNLIVIDIKDGKNIYKKQRPALGELP 378
Query: 176 EDVQMRSDWLIPICSGS--ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ + + L+N G KL KP L++ ++ TK ++LD F G
Sbjct: 379 TKKPKSIWYKPEYSTSTATTELKNLLGAKLFEGPKPVPLITDLVKIGTKKDSLVLDFFAG 438
Query: 234 SGTSGAVAKKLR------RSFIGIEMK 254
SGT+ L R+FI I+
Sbjct: 439 SGTTAEAVAYLNEKDSGCRNFICIQKD 465
>gi|309790262|ref|ZP_07684831.1| DNA methylase N-4/N-6 domain protein [Oscillochloris trichoides
DG6]
gi|308227688|gb|EFO81347.1| DNA methylase N-4/N-6 domain protein [Oscillochloris trichoides
DG6]
Length = 349
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 20/159 (12%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+++ I+G+S+ +L++LP +SVD+ PPY + +
Sbjct: 15 NDYQPLYIQGDSLDILKQLPCESVDMCMTSPPYWNKREY------------MNGGIGLEE 62
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILND 128
F+ Y +RVLK G+ W+ + +RI + + WIL +
Sbjct: 63 DFKEYINNLLLVFAEIKRVLKRTGSFWLNIGDTYLAKGLVGLPWRIAIAMMDHQGWILRN 122
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
V P+ + +N HE L K Y +
Sbjct: 123 DVIWNKIKGPDNTQDKLRNVHEYLFHFVKQNKGYYYDDH 161
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ G ++H PE L ++++ ++LDPF G+GT+ VAK+L R IGI++ Q+
Sbjct: 277 DTQGREIHYAAYPEDLCKIPILATCPLTGVVLDPFCGTGTTNLVAKQLFRKSIGIDIAQE 336
Query: 257 YIDIATKR 264
Y+D A +R
Sbjct: 337 YLDYAYRR 344
>gi|33599901|ref|NP_887461.1| type III restriction-modification system methyltransferase
[Bordetella bronchiseptica RB50]
gi|33567498|emb|CAE31411.1| type III restriction-modification system methyltransferase
[Bordetella bronchiseptica RB50]
Length = 613
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 22/178 (12%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------- 55
+ E K+ I+G+++ L+ L V +I+ DPPYN +
Sbjct: 81 PVREESVDFDTTKNLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYEDDFAED 140
Query: 56 ---QLYRPDHSLVDAV-----TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
L R + V TD+ +F S + + + R +L +G ++V
Sbjct: 141 ARTFLVRSNQVDDSGVRLVANTDTNGRFHS--DWLSMLYPRIKLARTLLSEDGVIFVSAD 198
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
I + + + + + + H+ ++ + + T
Sbjct: 199 DSEIANLIRICDEIFGEANFVANFIWEKRTNRENRKVVSSRHDYVVCYARNQMPGTRT 256
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 177 DVQMRSDWLIPICSGSERLRN-----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ S +E +N G + T KP L+ ++ S G IILD F
Sbjct: 355 GLTPESILFAEEVGTNESAKNLLKELFSGRAVFDTPKPVGLIQTLIQLSCDEG-IILDFF 413
Query: 232 FGSGTSGAVAKKLR------RSFIGIEM 253
GSGT+ +L R FI +++
Sbjct: 414 AGSGTTAEAIFELNTMDGRERRFILVQL 441
>gi|328944361|ref|ZP_08241824.1| adenine specific DNA methylase Mod [Atopobium vaginae DSM 15829]
gi|327491076|gb|EGF22852.1| adenine specific DNA methylase Mod [Atopobium vaginae DSM 15829]
Length = 557
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 18/177 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ + IIKGN++ L L V I+ DPPYN Q + + +++
Sbjct: 185 NDNDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTQND--------------SFNYN 230
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWR 132
+ + F + L R++L+ +GT+W+ H + + + N D +
Sbjct: 231 DSFNHSTWLTFMKNRLELARKLLREDGTIWISCDDHESHYLKVLTDDVFNRDNFIDEIVW 290
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ P + +H+ ++ + + AN + +
Sbjct: 291 QRAYAPINLKKTLSRSHDIILVYAKNLDPSFTLNKLPRSAEANARYKNPDNDPRGPW 347
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G ++ + + T K E L+ RIL +T GD++ D F GSGT+ AVA K+ R +IG
Sbjct: 437 GKREIKALHFDSIFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAAVAHKMGRRYIG 496
Query: 251 IEMKQDYIDIATKRIAS 267
+E DI +R+
Sbjct: 497 VEQMDYIQDITVERLKK 513
>gi|292898582|ref|YP_003537951.1| DNA methylase [Erwinia amylovora ATCC 49946]
gi|291198430|emb|CBJ45538.1| putative DNA methylase [Erwinia amylovora ATCC 49946]
Length = 506
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 18/193 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ II+G+++ L L A V IF DPPYN Q S + D +
Sbjct: 37 NMIIQGDNLLALRALMPLYAGQVKCIFIDPPYNTQ----------SAFEHYDDKLE---- 82
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ + L+ R +L +G++WV + + M+ +
Sbjct: 83 HSQWLSMMYPRLVLLRDLLAEDGSIWVTIDDNEAHYMKVMMDEVFGRENFIANSLWQKVF 142
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ H+ ++ K + +D S + R
Sbjct: 143 ATKNSAKHLSVDHDHILIYGKQANGWVPNLMPRTAKQDSIYKNPDNDPRGIWTSDNLTAR 202
Query: 197 NKDGEKLHPTQKP 209
N ++P P
Sbjct: 203 NSYSLGIYPVTNP 215
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+ T KPE L+ RIL ++ PGD+ILD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 297 VFSTPKPERLIQRILHIASNPGDLILDSFLGSGTTAAVAHKMNRRYIGIEMGEHARTHCI 356
Query: 263 KRIAS 267
R+
Sbjct: 357 PRLQK 361
>gi|241889780|ref|ZP_04777078.1| DNA methylase [Gemella haemolysans ATCC 10379]
gi|241863402|gb|EER67786.1| DNA methylase [Gemella haemolysans ATCC 10379]
Length = 178
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
R+LK ++ V S + + F+ +W K+NPMP F N
Sbjct: 8 VFKESSRILKNGASMIVFMSILRGETLVEIANKFGFYYKTTGIWHKTNPMPRNMNLHFVN 67
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
++E I+ T+ N+ + + + E+ K HPTQ
Sbjct: 68 SNECWIYF---------TYKTKTRTFNNKGKLVLDYIETSVTTAREKKLGK-----HPTQ 113
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KP L + + GD+++DPF GSG+S + +L R+FIG+E+++ Y + R+
Sbjct: 114 KPIILFEHFIRLLSNKGDLVVDPFLGSGSSAIASYRLNRNFIGVELEEKYAKLVNMRVED 173
Query: 268 VQ 269
+
Sbjct: 174 KK 175
>gi|120436806|ref|YP_862492.1| phage DNA modification methylase [Gramella forsetii KT0803]
gi|117578956|emb|CAL67425.1| phage DNA modification methylase [Gramella forsetii KT0803]
Length = 260
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/252 (17%), Positives = 79/252 (31%), Gaps = 22/252 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + +++ ++ + K DL DPPY + P+ S+ D + S
Sbjct: 27 RITQEDNMELMARAKDKEYDLAIVDPPYGINA------PNMSMGTNKKRKGDGYPSVSVA 80
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ L LK + + + L N I+W +
Sbjct: 81 QRLKKGRLNQGSGKLKNRALNTMNCEWDFEVPSQEYFKELFRISKNQIIWGGNY------ 134
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
++ + ++ A + ++ M + +
Sbjct: 135 --FDLPPTRCIVCWDKCQPWENFSQWEMAWTSFDKPAAMFRFSNTGGAN--------QEK 184
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKP L +L+ PGD I+D GSG+ L E + Y +
Sbjct: 185 KIHPTQKPVKLYEYLLMKFGNPGDKIIDTHLGSGSHSIACHNLGFHLDACEKDEQYYKDS 244
Query: 262 TKRIASVQPLGN 273
R+ Q
Sbjct: 245 LNRLKIHQSQQR 256
>gi|83310259|ref|YP_420523.1| modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
gi|82945100|dbj|BAE49964.1| Modification methylase DpnIIB [Magnetospirillum magneticum AMB-1]
Length = 422
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 33/249 (13%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G+S V L + L+ DPPY ++ + PD V+ +
Sbjct: 173 RHRLLCGDSTNATDVERLLAEATPHLMVTDPPYGVEYD-----PDWRNQAGVSSTSRTGK 227
Query: 77 -SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + + AW L P +V S + L+ +F + I+W K+
Sbjct: 228 VANDDRADWREAW------ALFPGEVAYVWHSAIYTRTVADSLEANDFKLRAQIIWSKNR 281
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + HE +A + D
Sbjct: 282 FVLG--RGDYHWQHEPCWYAVRKTGTGHWQGARDQATIWTIGNNG--------------- 324
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++D +H TQKP + R +++++ G+ + +PF GSGT+ A+ R +E+
Sbjct: 325 -DEDEATVHGTQKPVECMRRPILNNSAEGEAVYEPFAGSGTTVIAAETTGRICFAMELNP 383
Query: 256 DYIDIATKR 264
Y D+ R
Sbjct: 384 AYADVIVGR 392
>gi|33323516|gb|AAQ07486.1|AF503408_10 Mod [Enterobacteria phage P7]
Length = 646
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 23/228 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ K LA ++ N E K+ +IKG+++ VL+ + + V++I+ DPPYN +
Sbjct: 72 LPPKTLLAEDKTHNQQEENKNSQNLLIKGDNLEVLKHMVNAYAEKVNMIYIDPPYNTGKD 131
Query: 55 GQLYRPDHS----------------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
G +Y D + + SS A+ F L R +LK
Sbjct: 132 GFVYNDDRKFTPEQLSELAGIELDEANRILEFTTKGSSSHSAWLTFIYPRLYIARELLKE 191
Query: 99 NGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+G +++ + ++G + + N N F + HE + +
Sbjct: 192 DGVIFISIDDNEDKQLGLLCDEVFGQGNFVAKLPTIMNLKGNHDNFGFSDTHEYIYVYAK 251
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ ++ L +R K P
Sbjct: 252 NKDVCSLGQFDIDESEVEKEWDEDEYGLFKRADTLKRTGQDASRKSRP 299
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 25/207 (12%)
Query: 66 DAVTDSWDKFSSFEAYDAF-----TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V WD+ + Y F + R +P G V + N + +
Sbjct: 266 SEVEKEWDE----DEYGLFKRADTLKRTGQDASRKSRPKGWFPVFINSENKVYVT---DD 318
Query: 121 LNFWILNDIVWRKSNPM-----PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+D V +P ++ ++ + LI Y AL
Sbjct: 319 DKPLNEDDYVLYPVSPTGEELSWSWGKKKINDEFYNLIVIDIKDGKNIYKKQRPALGELP 378
Query: 176 EDVQMRSDWLIPICSGS--ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ + + L+N G KL KP L++ ++ TK ++LD F G
Sbjct: 379 TKKPKSIWYKPEYSTSTATTELKNLLGAKLFEGPKPVPLITDLVKIGTKKDSLVLDFFAG 438
Query: 234 SGTSGAVAKKLR------RSFIGIEMK 254
SGT+ L R+FI I+
Sbjct: 439 SGTTAEAVAYLNEKDSGCRNFICIQKD 465
>gi|332974814|gb|EGK11729.1| type III restriction-modification system methyltransferase
[Psychrobacter sp. 1501(2011)]
Length = 629
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 75/226 (33%), Gaps = 24/226 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------- 55
+ E + ++ I+G+++ L+ L V +I+ DPPYN +
Sbjct: 89 PVREESVNFDTTENLFIEGDNLEALKLLQESYLGQVKMIYIDPPYNTGNDFIYEDDFAED 148
Query: 56 ---QLYRPDHSLVDA---VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
L R + + VT++ + + L R +LK +G +++ +
Sbjct: 149 TSDFLQRSEQVDEEGNRLVTNTESNGRFHSDWLTMMYSRLKLARNLLKDDGLIFISCDAN 208
Query: 110 NIFRIGTM--LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS----PKAKG 163
+ + +DI WR+ + PN + + E ++ + + +
Sbjct: 209 EQANLKKIGDEIFGYQNFESDIHWRRRHNQPNDKSKIIARVSENILVYAKNSIILKERGT 268
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
Y + K + +D + + G + P
Sbjct: 269 YYGLPLSEKRVADYKNPDNDPKGDWTTNPWKAATGRGGTTYEIITP 314
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 26/167 (15%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
GS+ L + G+ L KP L+S ++ +TK D+ILD F GSGT+
Sbjct: 368 FFNHTEFGSNQDGSKELASLFGDAGLFSNPKPTKLISSLIKIATKEDDLILDFFAGSGTT 427
Query: 238 GAVAKKLR------RSFIGIEMKQD-----------YIDIATKRIASVQPLGNIELTVLT 280
++ R FI I++ + Y I+ ++ G L
Sbjct: 428 ADSTLQMNIEDSMRRKFILIQLDESTDEKSQAFKTGYSTISDLSKERIRRAGQKILEDNK 487
Query: 281 GKRTEPRVAFNLLV--------ERGLIQPGQILTNAQGNISATVCAD 319
K+ + V + P + + N + + D
Sbjct: 488 DKKGIEDLDIGFRVLKIDSTNMKEVYYTPDEYSQDQLENFESHIKED 534
>gi|120537207|ref|YP_957264.1| DNA methylase N-4/N-6 domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120327042|gb|ABM21349.1| DNA methylase N-4/N-6 domain protein [Marinobacter aquaeolei VT8]
Length = 635
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 14/173 (8%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ II+G++ L L + + +I+ DPPYN +Y + D W
Sbjct: 72 NLIIEGDNFDSLRLLRSTHRGRIRVIYIDPPYNTGSKDWVY---NDHYLKKDDRWK---- 124
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-NDIVWRKSNP 136
+ F L R +L P+G + V + N R+ ++ + + +VWR
Sbjct: 125 HSKWLEFMYQRLSIARDLLTPDGVIMVSINDENRSRLELLMDEVMPGMRLGSMVWRTRQG 184
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL-KAANEDVQMRSDWLIPI 188
+G + HE ++ + + +N D R DW
Sbjct: 185 SNADQGCFMSSDHEHILIYG--NPGFQFRGYEKSFEMYSNPDNDPRGDWRTDN 235
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
S G+ + N G ++ KP L+ ++L +T+PGDI+LD F GSGT+
Sbjct: 385 PGSFVSTTNHEGATGVANIFGSRVFNYAKPATLIRQLLDQATRPGDIVLDFFAGSGTTAQ 444
Query: 240 VAKK------LRRSFIGI 251
+ R FI
Sbjct: 445 AVLELNAKDGGNRRFIMC 462
>gi|292487337|ref|YP_003530209.1| type III restriction-modification system StyLTI enzyme mod [Erwinia
amylovora CFBP1430]
gi|291552756|emb|CBA19801.1| Type III restriction-modification system StyLTI enzyme mod [Erwinia
amylovora CFBP1430]
Length = 488
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 18/193 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ II+G+++ L L A V IF DPPYN Q S + D +
Sbjct: 19 NMIIQGDNLLALRALMPLYAGQVKCIFIDPPYNTQ----------SAFEHYDDKLE---- 64
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ + L+ R +L +G++WV + + M+ +
Sbjct: 65 HSQWLSMMYPRLVLLRDLLAEDGSIWVTIDDNEAHYMKVMMDEVFGRENFIANSLWQKVF 124
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ H+ ++ K + +D S + R
Sbjct: 125 ATKNSAKHLSVDHDHILIYGKQANGWVPNLMPRTAKQDSIYKNPDNDPRGIWTSDNLTAR 184
Query: 197 NKDGEKLHPTQKP 209
N ++P P
Sbjct: 185 NSYSLGIYPVTNP 197
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+ T KPE L+ RIL ++ PGD+ILD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 279 VFSTPKPERLIQRILHIASNPGDLILDSFLGSGTTAAVAHKMNRRYIGIEMGEHARTHCI 338
Query: 263 KRIAS 267
R+
Sbjct: 339 PRLQK 343
>gi|297565032|ref|YP_003684004.1| adenine-specific DNA-methyltransferase [Meiothermus silvanus DSM
9946]
gi|296849481|gb|ADH62496.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
silvanus DSM 9946]
Length = 629
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 19/157 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------QLYRPDHSL 64
++ II+G+++ VL+ L V LI+ DPPYN + L
Sbjct: 90 ENVIIEGDNLEVLKLLQQAYHGKVKLIYIDPPYNTGNDFVYPDDFREGVRQYLRFTGQLS 149
Query: 65 VDAVTDS---WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-N 120
D V + + + + L R +L+ +G ++V H + + ++
Sbjct: 150 EDGVRLTTAPEEGGRIHSRWLSMMYPRLQLARSLLRDDGVIFVSIDDHELHNLRAIMDEI 209
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
V + P+ F H+ L+
Sbjct: 210 FGEENFLATVLWQKKYAPSNDTTDFSYTHDYLLSYVK 246
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 50/170 (29%), Gaps = 12/170 (7%)
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ N T + I R +
Sbjct: 283 PWMSDNYTCNKTSEQRPNLYYPIIHPKTGKEIWPSRTAVWRYSR--ERHEQNVREGRVWW 340
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEA 211
+ + Y + D + + ++ GE T KP
Sbjct: 341 GLNQENETPRYKRYLSEVAGVVADTWWEHTDVGHTDEAKKEFKSLFGEDADAFDTPKPVR 400
Query: 212 LLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
LL R+L ST+P GDI+LD F GSGT G ++ R F+ +++
Sbjct: 401 LLKRLLQLSTEPDAGDIVLDFFAGSGTLGQAVLEMNQEDGGNRRFVLVQL 450
>gi|169830412|ref|YP_001716394.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169637256|gb|ACA58762.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 896
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 25/208 (12%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 129 NWSNRMILGDSLQVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSRDVKDGNVE 188
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
V A D+W +Y + R L R +L +G+++V N+ R+
Sbjct: 189 HITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLADSGSIFVQIGDENVHRVRA 246
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
++ + F I ++ +++ SP + Y + E
Sbjct: 247 LMDEV-FGEDCFISEIIVVKSSGLGSTTLPRQNDYILFYGKSPDSIKYRQLFKDKALDGE 305
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLH 204
R+++++ + H
Sbjct: 306 GAGAYQYVKGLDGI-IRRMKDEEKKNPH 332
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
RGR + E+L A+ + + + N+ L
Sbjct: 367 RGRWWGMPKESLERAAKADRLYALASTVSYQRLLNDWSSFPLTNTWTDTGTGSGL----- 421
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K++ Q + ++ R ++ +T PGD++LDP GSGT+ VA++ R +I I+ + + +
Sbjct: 422 NKIYVVQTDDKIVQRCILMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 481
Query: 261 ATKRI 265
A RI
Sbjct: 482 ARARI 486
>gi|311741947|ref|ZP_07715757.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
15272]
gi|311314440|gb|EFQ84347.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
15272]
Length = 344
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 64/323 (19%), Positives = 93/323 (28%), Gaps = 81/323 (25%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV------DAVTDSW------ 72
GN+ +L +LP SVD + DPPY + L V D +W
Sbjct: 23 HGNAFDLLRELPDASVDAVVTDPPYGIATPPGLKALHGRQVTCRTCGDTTAPTWVLCQTC 82
Query: 73 --------------------------DKFSSFEAYDAFTRAWLLACR-----RVLKPNGT 101
D RVLKP G
Sbjct: 83 LDIQRDVLLTEPSMLGHVAPNAHTTGTHTRGLADCDPGLLQRWAELLGTQLLRVLKPGGH 142
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG---------------RRFQ 146
+ G+ R+ T L+N F + + I W G
Sbjct: 143 ALLFGAPKTSHRVTTGLENAGFDVRDQITWIHQGAGARSTGILAVQSELIAVVRRPMIGT 202
Query: 147 NAHETLIWASPSPKA--------------------KGYTFNYDALKAANEDVQMRSDWLI 186
A ++ + G A + ++ V +
Sbjct: 203 RAMNHDLFGTGVLNTAGAASLAELPTTPTNVVAGEPGPDVFARAQQMLHDTVAFPPAVVC 262
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ ER HPT KP AL+ ++ +T PG +LDPF GSGT+ A R
Sbjct: 263 KKATKGERTFTSG---THPTVKPLALMRYLVELATPPGGTVLDPFAGSGTTVEAAIVQGR 319
Query: 247 SFIGIEMKQDYIDIATKRIASVQ 269
I E Y+ + T+RI
Sbjct: 320 PVIAFEADSAYLPLITERITRTA 342
>gi|240850618|ref|YP_002972018.1| adenine specific DNA methylase Mod [Bartonella grahamii as4aup]
gi|240267741|gb|ACS51329.1| adenine specific DNA methylase Mod [Bartonella grahamii as4aup]
Length = 546
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 62/195 (31%), Gaps = 18/195 (9%)
Query: 19 WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +K+I G+++ L+ L + V I+ DPPYN + ++
Sbjct: 46 FDNKLIFGDNLLTLKALEQEYMGKVKCIYIDPPYNTGNAFE--------------HYEDG 91
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKS 134
+ + R L +L +G++W+ + M+ + + +
Sbjct: 92 LEHSLWLSLMRDRLELLHHLLADDGSIWISIDDDEQAYLKVMMDEIFGRQNFINNIIWQK 151
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
P + + H+ ++ + + +D P SG
Sbjct: 152 KYAPQNDTKWLSDNHDFIMVYAKDKMFWRPQLLPRSSDMDARYKNPDNDPRGPWKSGDLS 211
Query: 195 LRNKDGEKLHPTQKP 209
++ + ++ P
Sbjct: 212 VKRVTLKDIYEIITP 226
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ ++ + + + T KPE L+ RI+ +T PGD+ILD F GSGT+GAVA K+ R +I I
Sbjct: 296 KKEVKVFNSDNVFTTPKPERLMERIIQLATNPGDLILDSFAGSGTTGAVAHKMGRKWIMI 355
Query: 252 EMKQDYIDIATKRIAS 267
E+ + R+
Sbjct: 356 ELGEHCHTHIIPRLKQ 371
>gi|227875014|ref|ZP_03993160.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
mulieris ATCC 35243]
gi|227844402|gb|EEJ54565.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
mulieris ATCC 35243]
Length = 645
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 14/168 (8%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRP 60
+ ++ F+ + I+G+++ VL+ L V +I+ DPPYN + +
Sbjct: 81 PEKSRSRDGKDGSFDSDNIYIEGDNLEVLKLLQRGYHGKVKMIYIDPPYNTGHDFVYHDS 140
Query: 61 DHSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ ++ + + + L R +L +G +++ S +
Sbjct: 141 FGNTIENYKEQAGLAGQSNAETSGRYHSDWCSMMYPRLKLARELLSDDGVIFISISNVEL 200
Query: 112 FRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
R+ TM ++ ++ +W K+ + + NA + +A
Sbjct: 201 SRLITMCSDIYGESNFIDLFIWEKTQHFGRQKLNSYSNADYIVCFAKK 248
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 65/207 (31%), Gaps = 29/207 (14%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
N+ V R+ + F + + A + + + D
Sbjct: 330 WSNETVQRELDKGTTFWVKTDKFAIRAIYGTGKTANESPRQIIFTNTSNPKATFNRFGDR 389
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-----IILDPFFGSGTSGA 239
+ + S+ ++N G KP +L+ ++ GD +++D F GSGT+
Sbjct: 390 IDTSENASKEVQNLIGN-AFSYPKPVSLIKYLISLLWTDGDFDDNPLVMDFFSGSGTTAQ 448
Query: 240 VAK-------KLRRSF--------------IGIEMKQDYIDIATKRIASVQPLGNIELTV 278
F ++ ++ I A +I S N +L +
Sbjct: 449 AVMDINLYATNGNARFTLVQLPEKAAEDRRTLCDIGEERIRRAGDKIKSDLDESNRQLML 508
Query: 279 LTGKRTEPRVAF--NLLVERGLIQPGQ 303
+ P + F L + G+ +P
Sbjct: 509 GEEPKQLPDIGFRVFTLDDSGIEKPQP 535
>gi|258654745|ref|YP_003203901.1| DNA methylase N-4/N-6 domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258557970|gb|ACV80912.1| DNA methylase N-4/N-6 domain protein [Nakamurella multipartita DSM
44233]
Length = 352
Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/339 (15%), Positives = 101/339 (29%), Gaps = 102/339 (30%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ G++++ L L S+D++ PPY + + +
Sbjct: 9 RLLIGDALTELRTLADASIDMVLTSPPYFRLRDY-----------GQGGQIGLEPHVDDW 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNIF---------------RIGTMLQNLNFWI 125
+ RRVL+P G+LW+ +G + R+ + + +
Sbjct: 58 VQRLLPVMRELRRVLRPTGSLWLNLGDTYATHLREGAERKSLLLGPERLALAMAADGWIL 117
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
N IVW K+NP P R E + + P+A ++
Sbjct: 118 RNKIVWAKTNPRPTSVPDRLACTWEPVYLFAAGPRAFFDIDAIRQPHRTRPPQVRQTGKH 177
Query: 186 IPICSGSERLRNKDGEK-------------------------------------LHPTQK 208
G+ R + HP
Sbjct: 178 GCSRPGAARGKYLGPNSDRLGGLTALKAQGRVGHPLGKNPGDVWQLATGGLRIGSHPAVF 237
Query: 209 PEALLSRILVSSTK--------------------------------------PGDIILDP 230
P AL R +++ ++LDP
Sbjct: 238 PPALAERAILAGCPERRCSNCRTAYRRLVRRIGATAVRGALRRQCSCTGKGFEPGVVLDP 297
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
F G+GT+ A++L R ++GIE+ DY + +R+ +
Sbjct: 298 FLGAGTTALAAERLGRDWVGIELNPDYAALTIERLRQER 336
>gi|194097602|ref|YP_002000638.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
gi|193932892|gb|ACF28716.1| putative modification methylase [Neisseria gonorrhoeae NCCP11945]
Length = 111
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+IFADPPY L +G + +V +WDK A F WL C +LKPNGT
Sbjct: 1 MIFADPPYFLSNDG-FSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLRLCYALLKPNGT 59
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+WV G++HNI+ IG ++Q + + ILN+I W K NP PN R F ++ ET+
Sbjct: 60 IWVCGTFHNIYLIGYLMQTVGYHILNNITWEKPNPPPNLSCRFFTHSTETI 110
>gi|188532552|ref|YP_001906349.1| Site-specific DNA-methyltransferase (Adenine-specific) [Erwinia
tasmaniensis Et1/99]
gi|188027594|emb|CAO95444.1| Site-specific DNA-methyltransferase (Adenine-specific) [Erwinia
tasmaniensis Et1/99]
Length = 628
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/209 (10%), Positives = 58/209 (27%), Gaps = 21/209 (10%)
Query: 17 FEWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
W+ + ++ G+++ VL+ L V LIF DPPYN + + +
Sbjct: 92 LNWESTQNLMLAGDNLEVLKLLQKSYSGKVKLIFIDPPYNTGKDFVYPDNFQDNIKNYLE 151
Query: 71 SWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ + + + R +L +G +++ + +
Sbjct: 152 LTGQMENGQKLSSNTEASGRFHTDWLNMIYPRIKLARNLLSDDGVMFMSIDDGEVANLRK 211
Query: 117 MLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ + + + + F + H+ ++ + +
Sbjct: 212 VCDEIFGEENFIANIVWQKKYTRSNDAKWFSDNHDHILAYGKNKERVTLNGQERNEDQLK 271
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ P + ++ K
Sbjct: 272 AYTNPDNHAKGPWKATPLHAKSGTNTKAF 300
Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAK------KLRR 246
L+ D + KP LL R++ +T I+LD F GSGT+ R
Sbjct: 376 LKALDLGGIFDNPKPVRLLQRMIHLATSADRQHIVLDFFAGSGTTAHAVMGSNAQDNGNR 435
Query: 247 SFIGIEM 253
FI +++
Sbjct: 436 RFICVQL 442
>gi|330993445|ref|ZP_08317380.1| Modification methylase MjaV [Gluconacetobacter sp. SXCC-1]
gi|329759475|gb|EGG75984.1| Modification methylase MjaV [Gluconacetobacter sp. SXCC-1]
Length = 259
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 33/228 (14%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
+ A SVD++ PPYN+ L + YR D D Y + RR
Sbjct: 1 MEAASVDVVVTSPPYNIGLKYRTYR-DRLEEDG-------------YLDWMVEVAAEVRR 46
Query: 95 VLKPNGTLWV---------IGSYHNIFRIGTMLQNLNFWILNDIVWR----KSNPMPNFR 141
V++P+G+ ++ + + R+ + N + + P
Sbjct: 47 VMRPDGSFFLNVAGSSAQPWLPFELMVRLRELFVLQNHISWVKSISVGVDTHGHFKPVNS 106
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS------ERL 195
R HE L + + + ++ R C G E +
Sbjct: 107 HRYLNRNHEHLFHLTLKGEVGLKRLDIGVPYKDKSNIVRRGHRQDRRCRGDTWFIPYETV 166
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ + + HP P L + K ++LDPF G+GT+ A +
Sbjct: 167 QGRAQKFHHPGTFPVLLPQMCIRLHGKSAPVVLDPFMGTGTTLVAAVR 214
>gi|288941263|ref|YP_003443503.1| DNA methylase N-4/N-6 domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288896635|gb|ADC62471.1| DNA methylase N-4/N-6 domain protein [Allochromatium vinosum DSM
180]
Length = 1038
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 26/197 (13%)
Query: 19 WKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQL----------YRPDHS 63
W +++I G+S+ V+ L A V +I+ DPPY ++ R D
Sbjct: 216 WANRLIAGDSLLVMNSLIQKESLAGRVQMIYIDPPYGIKYGSNFQPFVGKRDVKDRNDAD 275
Query: 64 ------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
++ A D+W+ +Y + R LL R +L +G+++V S N+ + +
Sbjct: 276 LTQEPEMIKAFRDTWELG--IHSYLTYLRDRLLLARELLHESGSVFVQISDENLHHVREI 333
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + F + N + + G + LIW + Y Y A D
Sbjct: 334 MDEV-FGVRNFCSVIQVQKTGSQEGSLLACTVDFLIWYAKDKSQVKYRQIYLERVA--GD 390
Query: 178 VQMRSDWLIPICSGSER 194
I + SG ER
Sbjct: 391 KSFTRYDFIRLPSGIER 407
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ D+ + E ++ Q E ++ R L+ +T PGD++LDP GSGT+
Sbjct: 484 KRFLDDFPVVPIDDHWESMQIGKELMYVVQTAERIIERCLLMTTDPGDLVLDPTCGSGTT 543
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ------PLGNIELTVLTGKRTEPRVAFN 291
VA+K R +I + + I +A +R+ + + L +T P V
Sbjct: 544 ATVAEKWGRRWITCDTSRVAITLAKQRLMTASFDYYELKYPHEGLKGGFIYKTVPHVTLK 603
Query: 292 LLVERGLIQP 301
+ I
Sbjct: 604 SIANNPEIDA 613
>gi|3914078|sp|O59647|MTMW_METWO RecName: Full=Modification methylase MwoI; Short=M.MwoI; AltName:
Full=N-4 cytosine-specific methyltransferase MwoI
gi|2961238|gb|AAC05700.1| MwoI DNA modification methyltransferase [Methanothermobacter
wolfeii]
Length = 668
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 54/263 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI+ G+ S L L S+ + PPY Q + + + E Y
Sbjct: 5 KILFGDVFSALRCLEDNSISVALTSPPYWRQRDY-----------GFKGQIGREKTPEEY 53
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSY------------HNIFRIGTMLQNLNFWILNDI 129
R LK +G ++ +R+ + + +L+ I
Sbjct: 54 IGRLIVIFRELRAKLKDDGVFFLNIGDKYKNRYGKSHLLQIPYRLAAHMIKDGWKLLDII 113
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+W K N MP+ RF N +E ++ S + + +
Sbjct: 114 IWYKPNHMPSSVKDRFTNTYEPVLVFGKSDENIYTKKHPVLKIPLQQTKWK--------- 164
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRR-- 246
H PE L+S +L + K GD ILDPF G+GT+GAV KK++
Sbjct: 165 --------------HTAVFPEKLVSSLLSRCNLKDGDYILDPFAGTGTTGAVVKKMKYQL 210
Query: 247 -----SFIGIEMKQDYIDIATKR 264
+ I IE + ++DI T+R
Sbjct: 211 YPKDLNVILIEKGKKFLDIITER 233
>gi|160700711|ref|YP_001552391.1| gp62 [Mycobacterium phage Giles]
gi|159136661|gb|ABW88457.1| gp62 [Mycobacterium phage Giles]
Length = 220
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 92/250 (36%), Gaps = 46/250 (18%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS--LVDAVTDSWDKFSSFE 79
+ G+ V L A D + DPPY + P S ++++ TD+ + ++ +
Sbjct: 11 TLFHGDCRDVDAWLDA---DALITDPPYGIAYRSGRPNPKGSPRVIESDTDTAARDAALD 67
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ AF V GS+ I R +VW K+
Sbjct: 68 MWAAF-------------GGAQAAVFGSW-KIPRPA--------GTHTVLVWSKNTSGMG 105
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ F +HE + K G+ + + +E +
Sbjct: 106 DLAQPFGPSHEEIYLLGRWSKPDGFKR------------------RGSVIATTEHPQRTA 147
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPT KP L+ +LVS+T G I DPF G G + A+ L R IG+E+ + Y +
Sbjct: 148 ELVAHPTPKPVGLME-VLVSATPDGASIADPFAGGGATLLAARNLGRKAIGVEIDERYCE 206
Query: 260 IATKRIASVQ 269
+ R++ +
Sbjct: 207 VIANRLSQMC 216
>gi|74316954|ref|YP_314694.1| adenine specific DNA methylase MOD [Thiobacillus denitrificans ATCC
25259]
gi|74056449|gb|AAZ96889.1| adenine specific DNA methylase MOD [Thiobacillus denitrificans ATCC
25259]
Length = 577
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 18/155 (11%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L + V +F DPPYN +D
Sbjct: 44 FDNRLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTGSAFA--------------QYDDG 89
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKS 134
+ R L RR+L +G+LW+ + + + K
Sbjct: 90 LEHSIWLGLVRDRLEIIRRLLSDDGSLWISIDDNEAHYLKVLCDEIFGRKCFVTSFIWKK 149
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
PN HE ++ +P + + D
Sbjct: 150 VDSPNDNKGALSPDHEYILCYVKNPDSIYFRPKQD 184
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G + T KPE L+SRIL ST PGD +LD F GSGT+GA A K+ R +I +E+++
Sbjct: 313 EGVQAFETPKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEETCH 372
Query: 259 DIATKRIASVQPLGNI 274
R+ V +
Sbjct: 373 THIIPRLRKVIDGEDK 388
>gi|126661692|ref|ZP_01732691.1| Site-specific DNA-methyltransferase (adenine-specific)
[Flavobacteria bacterium BAL38]
gi|126625071|gb|EAZ95760.1| Site-specific DNA-methyltransferase (adenine-specific)
[Flavobacteria bacterium BAL38]
Length = 624
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/198 (11%), Positives = 59/198 (29%), Gaps = 21/198 (10%)
Query: 13 QNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ +W ++ I+G+++ VL+ + V +I+ DPPYN + +
Sbjct: 85 KEESVDWDTTQNLYIEGDNLEVLKLMQKSYANKVKMIYIDPPYNTGKDFVYKDNYKDNLK 144
Query: 67 AV-------TDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
D +K S+ + L R +LK +G ++V + +
Sbjct: 145 NYQQVTGQVDDEGNKLSTNSDSDGRYHSNWLNMMYPRLRLARNLLKEDGVIFVSIDDNEV 204
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + ++ +H + + + L
Sbjct: 205 DNLRKICDEIFGESNFMGCIMWNSTKSVTNTALISVSHNYNLVFAKDINYFVKNREHFRL 264
Query: 172 KAANEDVQMRSDWLIPIC 189
+ + + +
Sbjct: 265 PESGDGFSNPDNDVRGPW 282
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 199 DGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAV 240
+ + KP L+ +++ + IILD F GS T+
Sbjct: 381 NNSSVFTNPKPVDLIEKMIQLGDHTKNAIILDFFGGSSTTAHA 423
>gi|261839489|gb|ACX99254.1| Modification methylase CfrBI [Helicobacter pylori 52]
Length = 404
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 86/268 (32%), Gaps = 50/268 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ S++LIF PPY Y+ +++ Y
Sbjct: 146 LLIGDNAQTLNKIVPNSINLIFTSPPYYNARIYSDYK-----------------NYKDYL 188
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
L AC RVL+ + + S + + IL D + +
Sbjct: 189 NAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 248
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 249 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 306
Query: 196 RNKDGE------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
++ K HP PE+L R+L + +++ DPF
Sbjct: 307 KSSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDPF 366
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GSGT G VAK + R + E Y
Sbjct: 367 AGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394
>gi|53793641|ref|YP_112541.1| modification methylase [Flavobacterium phage 11b]
gi|53748231|emb|CAH56692.1| modification methylase [Flavobacterium phage 11b]
Length = 216
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/250 (18%), Positives = 73/250 (29%), Gaps = 53/250 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG----QLYRPDHSLVDAVTDSWDKFSSF 78
I +++ ++ + P DL DPPY ++ G P H WD
Sbjct: 9 ITNEDNMLLMARYPDNYFDLAIVDPPYGIERGGQTETFTKNPKHKRKLHQQKDWDNSIPT 68
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ Y + G+ + + + FW S+
Sbjct: 69 KDYFNELFRVSKN----------QIIWGANYFVKHLNHSSMGWIFWFKGQEGLTMSDGEI 118
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+ + + L +
Sbjct: 119 AYSSFQKATRQININRG---------------------------------------LIAQ 139
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G +HPTQKPE L +L + K GD ILD GSG+ + E+ ++Y
Sbjct: 140 KGGSIHPTQKPEKLYRWLLENYAKEGDKILDTHLGSGSIAIACHDYKFDLTACELDKEYY 199
Query: 259 DIATKRIASV 268
D A KRI +
Sbjct: 200 DAAVKRITNH 209
>gi|319760132|ref|YP_004124071.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
BC]
gi|317119738|gb|ADV02226.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
BC]
Length = 642
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 12/202 (5%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
N E ++ +I+G++ L L A + +I+ DPPYN +Y +
Sbjct: 64 KPNGCNEHRNLVIEGDNFDALRLLRATHAGKIRVIYIDPPYNTGNKDWVY---NDQFVGK 120
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
D W + F L R ++ +G + V + N R+ ++ +
Sbjct: 121 NDRWR----HSLWLEFLYQRLTLARDLMTSDGVILVSINDENRARLELLMDEVFPGRRLG 176
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ ++ N +RF + HE ++ + S A + N D R DW
Sbjct: 177 SLVWRTKDTGNDLTQRFSHVHEHVLVYANSGFAFNGRPTNRSKFR-NPDRDERGDWSPQP 235
Query: 189 CSGSERLRNKDGEKLHPTQKPE 210
+ ++ L + +P Q PE
Sbjct: 236 LTANKSLIERP-NTYYPIQDPE 256
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GR + H T S +D + ++ ++ G
Sbjct: 365 GRPSRKEHWTDKPESERLAPLSSWIAGVNEDVGEDDDDLMMLRSPRGGIATDEVKQILGS 424
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
K KP +L+ +L +++P DI+LD F GSGT+G V +L R FI
Sbjct: 425 KAFQHPKPVSLIKGLLEQASRPDDIVLDFFAGSGTTGQVVLELNAQDRGKRRFILC 480
>gi|189485518|ref|YP_001956459.1| adenine/cytosine-specific DNA methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287477|dbj|BAG13998.1| adenine/cytosine-specific DNA methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 214
Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 39/225 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+KI + + ++ +S+DL DPPYN++ D F S +
Sbjct: 5 NKIYNLDCFTFFNQVEKESIDLAIIDPPYNMKKA----------------KGDTFKSHQD 48
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ FT W+ A LK G+L++ + N I L + N +
Sbjct: 49 FLYFTFKWINALIPTLKETGSLYIFNTPFNCAYILQYLVDKGLIFQN-WITWDKRDGLGT 107
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTF----------------------NYDALKAANEDV 178
++ N E++++ + + K N ++
Sbjct: 108 SKTKYSNGQESILFFTKNKKHIFNYDEIRVPYESTERIEHASKKGILKNGKRWFPNDKGR 167
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
W I ++ K + H KP L+ RI+ +S+
Sbjct: 168 LCGEVWHIVSERHRNKINGKTIKNEHVASKPLELIERIIKASSNE 212
>gi|303245983|ref|ZP_07332265.1| Site-specific DNA-methyltransferase (adenine-specific)
[Desulfovibrio fructosovorans JJ]
gi|302492766|gb|EFL52634.1| Site-specific DNA-methyltransferase (adenine-specific)
[Desulfovibrio fructosovorans JJ]
Length = 618
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ II G+++ L+ L A VD IF DPPYN Y + ++ + W
Sbjct: 39 NLIIHGDNLHALKSLLPRYAGKVDCIFIDPPYNTGKENWCY--NDNVNSPIMREWLSSNP 96
Query: 73 ---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
+ + + A L +L +G++WV + I R+ +ML +
Sbjct: 97 VNREDMLRHDKWCAMMWPRLKLLHELLADDGSIWVSCDDNEIHRLRSMLDEIFGDENLVS 156
Query: 130 VWRKSNPMPNFRGR-RFQNAHETLIWASP 157
+ N + HE +I S
Sbjct: 157 ILVVENNRKGRNDKENIALTHEYMIAYSR 185
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 195 LRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS----- 247
+++ G H KP + +++ + IILD F GSGT+ + R
Sbjct: 334 IKDIFGNNPLSHS-PKPLEQIVQVIQLAVGKNGIILDSFAGSGTTAHAVLEANRRDDGNR 392
Query: 248 -FIGIEMKQDYIDIATKRIASV 268
FI +E + + +R+ +
Sbjct: 393 NFILVECEDYADALTAERVRRI 414
>gi|297379884|gb|ADI34771.1| Modification methylase [Helicobacter pylori v225d]
Length = 404
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 52/268 (19%), Positives = 85/268 (31%), Gaps = 50/268 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ S++LIF PPY Y+ +++ Y
Sbjct: 146 LLIGDNAQTLNKIVPNSINLIFTSPPYYNARIYSDYK-----------------NYKDYL 188
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
L AC RVL+ + + S + + IL D + +
Sbjct: 189 NTMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 248
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 249 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 306
Query: 196 RNKDGE------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ K HP PE+L R+L + +I+ DPF
Sbjct: 307 KPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEIVCDPF 366
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GSGT G VAK + R + E Y
Sbjct: 367 AGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394
>gi|307566444|ref|ZP_07628879.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
gi|307344869|gb|EFN90271.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
Length = 634
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 19/221 (8%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP---- 60
+ E+ ++ I+G+++ VL+ L V +I+ DPPYN + +
Sbjct: 89 PVTEDSVDWDTTQNLYIEGDNLRVLKLLQKSYMGKVKMIYIDPPYNTGNDFVYHDDFKTS 148
Query: 61 --DHSLVDAVTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
D L D + + + LL R +L +G +++ H
Sbjct: 149 LADEELAAGNIDEEGLRYRKNLDGNGRFHSDWCSMMYSRLLVVRSLLTEDGVIFISIDDH 208
Query: 110 NIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
+ + + + + P + N+H+ ++ + +
Sbjct: 209 EVHNLRKICDEVFGASNFVAELVWERAFAPKNDAKYISNSHDYILMYAKEIQKFKIGRLP 268
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+A +D S ++ + +P P
Sbjct: 269 RTEEANARYSNPDNDPRGVWTSSDISVKTYNAACDYPITTP 309
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 11/133 (8%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
E + + + KP LL R++ +++ I+LD F GS T+ +
Sbjct: 381 KEVTALFEDKGVFDGPKPVRLLKRLITLANLDDKSIVLDFFSGSATTAHALMQYN----- 435
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG-LIQPGQILTNAQ 309
K+ + ++ P + +G T P +A + G I+ LT
Sbjct: 436 -AEKEKHCKFICAQLIEDTPEESPA--RKSGYATIPEIAKERIRRAGKKIKEETPLTTQH 492
Query: 310 GNISATV-CADGT 321
+ V DG+
Sbjct: 493 LDTGFRVFRLDGS 505
>gi|294783862|ref|ZP_06749184.1| type III restriction-modification system, methylase subunit
[Fusobacterium sp. 1_1_41FAA]
gi|294479674|gb|EFG27453.1| type III restriction-modification system, methylase subunit
[Fusobacterium sp. 1_1_41FAA]
Length = 627
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 22/217 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ L + +I+ DPPYN + ++
Sbjct: 84 EESKNWDNTENIYIEGDNLEVLKLLQKSYHGKIKMIYIDPPYNTGKDFVYKDNFTDNIEN 143
Query: 68 VTDSWDK---------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + + L R +L +G +++ +
Sbjct: 144 YKEITGQTNKEGTKLTTNTDTDGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDNEQA 203
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + RK+ N HE LI S + Y
Sbjct: 204 NLKRLCDEIFGEENFIADFIRKTKSTTNDAKTGINYQHEFLICYSKN---FQYVNLLGGE 260
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
K SD S + ++ E + + K
Sbjct: 261 KNLENYSNPDSDPKGDWISDNPSAKSGSMENNYFSIK 297
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
K L +IL+ ST+ DIILD F GS T+ + R +I +++
Sbjct: 386 FLYPKGVKFLKKILLHSTEKEDIILDFFSGSATTAHSVMQLNGEDGGNRKYIMVQL 441
>gi|261838076|gb|ACX97842.1| type II m4C methyltransferase [Helicobacter pylori 51]
gi|317177507|dbj|BAJ55296.1| putative type II cytosine specific methyltransferase [Helicobacter
pylori F16]
Length = 404
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 50/268 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ S++LIF PPY Y+ +++ Y
Sbjct: 146 LLIGDNAQTLNKIVPNSINLIFTSPPYYNARIYSDYK-----------------NYKDYL 188
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
L AC RVL+ + + S + + IL D + +
Sbjct: 189 NAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 248
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 249 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 306
Query: 196 RNKDGE------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ K HP PE+L R+L + +++ DPF
Sbjct: 307 KPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDPF 366
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GSGT G VAK + R + E Y
Sbjct: 367 AGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394
>gi|317009298|gb|ADU79878.1| putative type II cytosine specific methyltransferase [Helicobacter
pylori India7]
Length = 404
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 50/268 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ S++LIF PPY Y+ +++ Y
Sbjct: 146 LLIGDNAQTLNKIVPNSINLIFTSPPYYNARIYSDYK-----------------NYKDYL 188
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
L AC RVL+ + + S + + IL D + +
Sbjct: 189 NAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 248
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 249 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 306
Query: 196 RNKDGE------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ K HP PE+L R+L + +++ DPF
Sbjct: 307 KPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDPF 366
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GSGT G VAK + R + E Y
Sbjct: 367 AGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394
>gi|297530433|ref|YP_003671708.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
sp. C56-T3]
gi|297253685|gb|ADI27131.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
sp. C56-T3]
Length = 633
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 53/166 (31%), Gaps = 16/166 (9%)
Query: 8 AINENQNSIFEWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD 61
+ ++ S W+ + I+G+++ VL+ L + +I+ DPPYN +
Sbjct: 73 TLRPDKASSKNWETTENLYIEGDNLEVLKLLQKSYFGKIKMIYIDPPYNTGKDFVYKDDF 132
Query: 62 HSLVDAVT---------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ ++ + L R +L+ +G +++ + +
Sbjct: 133 RDNIKNYKEITQQTTKANTETNGRYHTDWLNMMYPRLKLARNLLREDGVIFISIDDNEVA 192
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + L + + +N E +I
Sbjct: 193 NLRKVCDEIFGENNLIAQFTWVKKKKGSHLSQTIRNITEYVIAYKK 238
>gi|163858554|ref|YP_001632852.1| type III restriction system methylase [Bordetella petrii DSM 12804]
gi|163262282|emb|CAP44585.1| type III restriction system methylase [Bordetella petrii]
Length = 632
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 26/196 (13%)
Query: 18 EWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--- 68
+W+ + +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 93 DWETTQNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLEL 152
Query: 69 -----------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+++ + L R +L+ +GT+++ + R+
Sbjct: 153 TGQVEGGQKISSNTEASGRFHTDWLNMIYPRLKLARNLLRRDGTIFISIDDGELPRLRVA 212
Query: 118 LQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
++ L +W+ N HE ++ S + D + +N
Sbjct: 213 ADDIFGEENFLACFIWKSRQNKDNRTVTGASVDHEYIVCYGNSIRGAA----RDRSQYSN 268
Query: 176 EDVQMRSDWLIPICSG 191
D R DW G
Sbjct: 269 PDGDPRGDWTSANMVG 284
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
++ KP L++ ++ ++ DIILD F GSGTS + R +I +++
Sbjct: 380 RIFNFPKPVELVAGLIEQGSEGDDIILDFFAGSGTSAHASMYQNAADGGNRRYITVQL 437
>gi|160943496|ref|ZP_02090729.1| hypothetical protein FAEPRAM212_00987 [Faecalibacterium prausnitzii
M21/2]
gi|257437675|ref|ZP_05613430.1| adenine specific DNA methylase [Faecalibacterium prausnitzii
A2-165]
gi|158445175|gb|EDP22178.1| hypothetical protein FAEPRAM212_00987 [Faecalibacterium prausnitzii
M21/2]
gi|257199982|gb|EEU98266.1| adenine specific DNA methylase [Faecalibacterium prausnitzii
A2-165]
Length = 587
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ +K S N + ++ II+G+++ L+ L V I+ DPPYN G +
Sbjct: 24 LERKYSFDENGQHSEDNGSENMIIRGDNLEALKALLPRYEGRVKCIYIDPPYNTGNEGWV 83
Query: 58 YRPDHSLVDAVTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
Y + ++ D W + + + + L +++L +G L + SY
Sbjct: 84 Y--NDNVNDPKIKKWLGEVVGKEGEDLTRHDKWLCMMYPRLKLLQKLLADDGCLIISISY 141
Query: 109 HNIFRIGTML 118
H + + +L
Sbjct: 142 HELHNLVNLL 151
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 189 CSGSERLRNKDGE--KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR- 245
+G++ L+N E K K AL+ ++ + TK DIILD F GSGT+ +
Sbjct: 368 VNGTQTLKNIFPESPKTFDYPKSVALIESVVQAITKDADIILDSFAGSGTTAHAVLNMNK 427
Query: 246 -----RSFIGIEMKQDYIDIATKRIAS 267
R FI +EM I +R+
Sbjct: 428 ADGGHRKFILVEMMDYADSITAERVKR 454
>gi|108563097|ref|YP_627413.1| putative type II cytosine specific methyltransferase [Helicobacter
pylori HPAG1]
gi|107836870|gb|ABF84739.1| putative type II cytosine specific methyltransferase [Helicobacter
pylori HPAG1]
Length = 404
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 50/268 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ S++LIF PPY Y+ +++ Y
Sbjct: 146 LLIGDNAQTLNKIVPNSINLIFTSPPYYNARIYSDYK-----------------NYKDYL 188
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
L AC RVL+ + + S + + IL D + +
Sbjct: 189 NAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 248
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 249 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 306
Query: 196 RNKDGE------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ K HP PE+L R+L + +++ DPF
Sbjct: 307 KPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDPF 366
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GSGT G VAK + R + E Y
Sbjct: 367 AGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394
>gi|260577043|ref|ZP_05845022.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
gi|259020713|gb|EEW24030.1| ParB domain protein nuclease [Rhodobacter sp. SW2]
Length = 443
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 89/267 (33%), Gaps = 33/267 (12%)
Query: 20 KDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K ++ G++ V + + L+F PPY Q + A + +
Sbjct: 173 KHRLCCGDATDPAVVARLMQGEQATLMFTSPPYAQQRDYG----------AAKEKVGNWD 222
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSN 135
+ T ++L G + + + ++ + VW +
Sbjct: 223 ALMQGVFATAPVTAEA-QLLVNLGLVHRDSEWQPYWEGWVEWMRASGWRRFGWYVWDQGP 281
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-----------------DV 178
+P R +HE + + +P+ T
Sbjct: 282 GLPGDWNGRLAPSHEFIFHFNRAPRKPHKTVPSKHAGETLGGGGLRGADGTVHAKTGTGN 341
Query: 179 QMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
++S + R + G HP P AL+ +L + + PGD+I +PF GSGT
Sbjct: 342 AIQSHRIPDSVFRIMRHKGGLGAAGSHPAVFPVALVEAVLTAFSDPGDLIYEPFCGSGTQ 401
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKR 264
A++ R +EM Y D+A +R
Sbjct: 402 IIAAERAGRLCFAMEMDPVYCDVAVRR 428
>gi|317012500|gb|ADU83108.1| putative type II cytosine specific methyltransferase [Helicobacter
pylori Lithuania75]
Length = 403
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 50/268 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ S++LIF PPY Y+ +++ Y
Sbjct: 145 LLIGDNAQTLNKIVPNSINLIFTSPPYYNARIYSDYK-----------------NYKDYL 187
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
L AC RVL+ + + S + + IL D + +
Sbjct: 188 NAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 247
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 248 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 305
Query: 196 RNKDGE------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ K HP PE+L R+L + +++ DPF
Sbjct: 306 KPNKQNNTLFGKKELPIETTNCWYIAPKSSKDHPAVFPESLCERVLNYYSFENEVVCDPF 365
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GSGT G VAK + R + E Y
Sbjct: 366 AGSGTFGMVAKSMGRIPLLCEQHPKYAQ 393
>gi|188527466|ref|YP_001910153.1| putative type II cytosine specific methyltransferase [Helicobacter
pylori Shi470]
gi|188143706|gb|ACD48123.1| putative type II cytosine specific methyltransferase [Helicobacter
pylori Shi470]
gi|308062014|gb|ADO03902.1| putative type II cytosine specific methyltransferase [Helicobacter
pylori Cuz20]
Length = 404
Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 50/268 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ S++LIF PPY Y+ +++ Y
Sbjct: 146 LLIGDNAQTLNKIVPNSINLIFTSPPYYNARIYSDYK-----------------NYKDYL 188
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
L AC RVL+ + + S + + IL D + +
Sbjct: 189 NAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 248
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 249 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 306
Query: 196 RNKDGE------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ K HP PE+L R+L + +++ DPF
Sbjct: 307 KPSKQNNTLFGKKELPIETTNCWYITPKSSKDHPAIFPESLCERVLNYYSFENEVVCDPF 366
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GSGT G VAK + R + E Y
Sbjct: 367 AGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394
>gi|114775609|ref|ZP_01451177.1| Site-specific DNA-methyltransferase (adenine-specific)
[Mariprofundus ferrooxydans PV-1]
gi|114553720|gb|EAU56101.1| Site-specific DNA-methyltransferase (adenine-specific)
[Mariprofundus ferrooxydans PV-1]
Length = 392
Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 28/214 (13%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---QLYRPDHSL 64
E + ++ I+G+++ VL+ L V LI+ DPPYN + +R +
Sbjct: 91 EESENWDTTQNLFIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYKDDFRDNIKN 150
Query: 65 VDAVTDSWDKFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+T D+ S + L R +L+ +G +++ +
Sbjct: 151 YKKLTGQVDEAGSPLTTNTEASGRFHTDWLNMMYPRLKLARNLLREDGLIFISIDDAEVS 210
Query: 113 RIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG------- 163
+ ++L + I WR+ + PN + + E ++ + + +A
Sbjct: 211 NLKSILNEIYGEENFEGHIHWRRRHNQPNDKNKMLALVAEHILCYAKNKEAYKAAGVGKV 270
Query: 164 -YTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
T N+ W + R +
Sbjct: 271 EVTGNFSNPDNDPRGEWASKPWKVGSGQSGSRYK 304
>gi|261419592|ref|YP_003253274.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
sp. Y412MC61]
gi|319766408|ref|YP_004131909.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
sp. Y412MC52]
gi|261376049|gb|ACX78792.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
sp. Y412MC61]
gi|317111274|gb|ADU93766.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
sp. Y412MC52]
Length = 648
Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 8 AINENQNSIFEWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD 61
+ ++ S W+ + I+G+++ VL+ L + +I+ DPPYN +
Sbjct: 73 TLRPDKASSKNWETTENLYIEGDNLEVLKLLQKSYFGKIKMIYIDPPYNTGKDFVYKDDF 132
Query: 62 HSLVDAVT---------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
H + ++ + L R +L+ +G + V
Sbjct: 133 HDNIKNYKEITQQMAKANTETNGRFHTDWLNMMYPRLKLARNLLREDGVILVSIDDVEYA 192
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ +L + + S N + +HE ++ + +
Sbjct: 193 NLKKILDEVFGQENFVGSFIWSAGRKNDS-KYISISHEYILCYFKNME 239
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-- 222
Y +E S + S S+RL++ G+K+ K E ++ +++ ++
Sbjct: 367 IPCYKRYLFESEYQVPYSVFYQDNRSASKRLKDLFGKKVFDFPKDENIIKKLISIASYAQ 426
Query: 223 ------PGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
DIILD F GS T+ + R FI +++
Sbjct: 427 EGANSSTNDIILDFFSGSATTAHAVMQLNAEDGGNRKFIMVQL 469
>gi|13540955|ref|NP_110643.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
gi|14324340|dbj|BAB59268.1| modification methylase [Thermoplasma volcanium GSS1]
Length = 337
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 78/222 (35%), Gaps = 31/222 (13%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEK---------LPA--KSVDLIFADPPYNLQLNGQLYR- 59
+ E+ +++I G+++ ++ LP+ +DLI+ DPP++ + N +
Sbjct: 67 KTENNNEFLNRLIYGDNLLAMQAFLAGDPETGLPSMRGKIDLIYIDPPFDSKANYRTKIH 126
Query: 60 ---------PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
P A +D+W ++Y L+ + +L G+++V +H
Sbjct: 127 LPTADVEQMPSVIEQFAYSDTWK--DGTKSYLEMIVPRLVLMKELLSEKGSIYVHIDWHV 184
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-------SPKAK 162
+ ++ + + K P + + F H+ L K +
Sbjct: 185 GHYVKVIMDEIFGRENFVNEIVWKKTNSPKAQSKGFGTQHDVLYIYRKTPQFIFNQIKKE 244
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ + D + + + G +R N+ + H
Sbjct: 245 PDEDYLKSYVYDDNDGRGPYQTVALVAGGIQRSENRKIFEFH 286
>gi|258508018|ref|YP_003170769.1| adenine specific DNA methylase Mod [Lactobacillus rhamnosus GG]
gi|257147945|emb|CAR86918.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus GG]
Length = 325
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 20/209 (9%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-----R 59
+N+N K+ G+++ VL L +D+I+ DPPYN +G +Y
Sbjct: 82 DEQQNKNEGKNSKNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEY 141
Query: 60 PDHSLVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D L D+ S A+ F L+ + +L +G ++V +
Sbjct: 142 SDDQLERMFDIDDDQVERLKSIQGKSSHSAWLTFMLPRLILAKGLLSDSGVIYVSIDDNE 201
Query: 111 IFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
++ + ++ L D++W+ + N + + TL +A K +
Sbjct: 202 QAQLKLLCDDIFGEINFLADVIWKHTQQSKNDEPFFARMYNHTLAYAKNINKLNPFFLKR 261
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRN 197
+ N +D +G R N
Sbjct: 262 TSKDNINY-SNPDNDSNGAWRAGDVRSPN 289
>gi|126011082|ref|YP_001039907.1| putative N-6 adenine-specific DNA methylase [Streptococcus phage
phi3396]
gi|124389351|gb|ABN10793.1| putative N-6 adenine-specific DNA methylase [Streptococcus phage
phi3396]
Length = 224
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/245 (17%), Positives = 85/245 (34%), Gaps = 32/245 (13%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + ++ + P K +L DPPY + Y V + K +
Sbjct: 6 NEDCMQLMSRYPDKYFELAIVDPPYFSGPEKRNYYGRKVSPIGVKRLYGK---TSEWHVP 62
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
+ RV K V D + + + +
Sbjct: 63 DEKYFDELFRVSKNQIIWGV--------------------NYYDYHFSSGRIVWDKVNGQ 102
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ + + S + + + + N +Q +S + G+ ++ + ++H
Sbjct: 103 SSFSDCEIAYCSFYDSVRLFRYMW------NGMMQGKSISEGHLQQGN---KSLNEVRIH 153
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PTQKP L +L + K GD ILD GS +S ++L ++G E+ +A++R
Sbjct: 154 PTQKPVNLYLWLLQNYAKDGDKILDTHVGSASSLIACEELGFDYVGCELDSGIYTLASER 213
Query: 265 IASVQ 269
+ +
Sbjct: 214 LNKYK 218
>gi|219872169|ref|YP_002476544.1| type III restriction-modification system methyltransferase
(adenine-specific)/adenine specific DNA methylase Mod
[Haemophilus parasuis SH0165]
gi|219692373|gb|ACL33596.1| type III restriction-modification system methyltransferase
(adenine-specific)/adenine specific DNA methylase Mod
[Haemophilus parasuis SH0165]
Length = 635
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 25/234 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------QLYRPDHSLV 65
+ I+G+++ L+ L + +I+ DPPYN + L R +
Sbjct: 100 NLFIEGDNLDALKLLQETYLGKIKMIYIDPPYNTGNDFIYNDDFTENYNDFLERSNQIDE 159
Query: 66 DAVT---DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ ++ + + + L R +L +G +++ + +
Sbjct: 160 EGNRLTANTESNGRFHSDWLSMMYSRLKLARNLLSDDGVIFISIDECEYDNLRKLCNEIF 219
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG----YTFNYDALKAANED 177
D + K + F H+ ++ + + + + N D
Sbjct: 220 GTNNFVDSLIWKKLYGGKNDSKWFLRYHDYILVYAKNKNLWYPNLLPRTDKQNDRYKNPD 279
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILD 229
R W +G ++ + + P R +V+ K +++ D
Sbjct: 280 NDPRGPWKSGDFTGIGETQSCRYKIISPSGAVFYPKEGKRWIVNQEKFNELLED 333
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
K KP LL R+ + +ILD F GS T+ + R FI +++
Sbjct: 387 KFFDYPKPVELLHRLSHLGSNKNALILDFFAGSSTTAHAVMQLNAEDNGNRRFIMVQL 444
>gi|329848121|ref|ZP_08263149.1| type III restriction-modification system EcoP15I enzyme mod
[Asticcacaulis biprosthecum C19]
gi|328843184|gb|EGF92753.1| type III restriction-modification system EcoP15I enzyme mod
[Asticcacaulis biprosthecum C19]
Length = 189
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 18/147 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L V I+ DPPYN S + D+ +
Sbjct: 43 NMLIQGDNLEALKSLLPYYRGQVKCIYIDPPYNT----------RSAFEHYDDNLE---- 88
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ A L+ R +L +G++WV + + ++ D V + +
Sbjct: 89 HSQWLAMIWPRLVLLRELLAEDGSIWVSIDDNEGHYLKVIMDEVFGRRNFIDTVIWEKSD 148
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKG 163
P R+ + H+ + S
Sbjct: 149 SPRNSARQLSSDHDFIFGYSKREDWVP 175
>gi|308274483|emb|CBX31082.1| hypothetical protein N47_E45940 [uncultured Desulfobacterium sp.]
Length = 544
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 65/192 (33%), Gaps = 20/192 (10%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L A V ++ DPPYN + +D
Sbjct: 45 FDNRLIFGDNLLALKALEWEFAGKVKCVYIDPPYNTGSAFE--------------HYDDG 90
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + R L +R+L +G++W+ + + + +
Sbjct: 91 IEHSVWLSLMRDRLEIIQRLLSDDGSMWITIDDNEAHYLKVLCDEVFGRGNFVATMVWEK 150
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
R F H+ ++ + + T N + N+++ R G +
Sbjct: 151 RTSRENRRVFSFNHDFVLVYAKQKQKFELTRN---PLSLNQEILGRYKNPDNDPRGPWQS 207
Query: 196 RNKDGEKLHPTQ 207
+ + + H T
Sbjct: 208 VSANAQAGHATP 219
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK----------LHPTQKPEALLS 214
T + N+D + I SE N D +K + KPE L
Sbjct: 266 TPRVKKFLSNNQDKGLTP---ETIWPASEVGTNDDAKKGLLQLLPHVQVFDNPKPEGFLE 322
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
R++ +T PGD++LD F GSGT+GAVA K+ R +I +E+ + R+ V +
Sbjct: 323 RLIHIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGEHCHTHIIPRLKKVIDGEDS 382
>gi|291303704|ref|YP_003514982.1| DNA methylase N-4/N-6 domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290572924|gb|ADD45889.1| DNA methylase N-4/N-6 domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 333
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 60/306 (19%), Positives = 93/306 (30%), Gaps = 74/306 (24%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ L L +SVDLI PPY G + + AY
Sbjct: 5 VMCADAR-ALP-LADESVDLIVTSPPYY----GLRSYTNGGR--HYDGQIGAEPTPAAYI 56
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNI------------------------------- 111
RVLKP G+LWV +
Sbjct: 57 DALIEATRDWLRVLKPVGSLWVNLGDAYVGGGRGGNLGGHLTGGSHTKTASTPHGTSKYP 116
Query: 112 ---------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
L +L + +++W K N MP R + +HET + +
Sbjct: 117 AKTLLGLPWRYAIRCLDDLGLILRAEVIWSKPNAMPESMTDRVRRSHETWLHFVQHQRYF 176
Query: 163 -----------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK------------- 198
Y+ A + A + R G RL
Sbjct: 177 AAIDGIREPASNYSRPNGAGRQARGGQKPRKMLDTCNPLG--RLPGSVWEIATQPLHIPA 234
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ H P R++++ P +LDPF G+GT+ VA L R+ I ++ DY
Sbjct: 235 ELNITHHAAFPLEWPRRLIIAWCPPSGTVLDPFGGTGTTALVADVLGRTGISVDASADYC 294
Query: 259 DIATKR 264
+A R
Sbjct: 295 RLARWR 300
>gi|162450105|ref|YP_001612472.1| hypothetical protein sce1834 [Sorangium cellulosum 'So ce 56']
gi|161160687|emb|CAN91992.1| hypothetical protein sce1834 [Sorangium cellulosum 'So ce 56']
Length = 611
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 3/147 (2%)
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
D + P + + + T + +E M
Sbjct: 274 DTDYEWHGKRPYRGRFWAFSKEKMDQMYADGRIVFRRTGMPVYKRYLDE---MPGVPFQD 330
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + +PTQKP ALL RI+ SS+K GD++LDPF G GT+ A KL R
Sbjct: 331 VWTDVRLASASTERIGYPTQKPLALLERIIASSSKSGDLVLDPFCGCGTTIEAAHKLGRK 390
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNI 274
++GI++ IDI RI ++ P +
Sbjct: 391 WVGIDITYLSIDIIKGRIDALSPGSDD 417
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 44/190 (23%)
Query: 22 KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD------AVTDSWDK 74
+ G+++ VL + +SVDLI+ DPP+N + N + + D A DSW
Sbjct: 49 TLYYGDNLKVLREHVRDESVDLIYLDPPFNSKRNYNVIYKEPDSSDSVAQKRAFDDSWHW 108
Query: 75 -------------------------------------FSSFEAYDAFTRAWLLACRRVLK 97
+ AY ++ RVLK
Sbjct: 109 DFAADAAYRRLVGSGAEERGVPTKLVSLVEAFRIFLGQTDMLAYVVMMAERIVELHRVLK 168
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
G+L++ + +L + R+ H+ + + +
Sbjct: 169 RTGSLYLHCDPTASHYLKLVLDAIFGPDNFRNEIVWQRSTAKNDPSRYGRCHDIIFFYTK 228
Query: 158 SPKAKGYTFN 167
S + T
Sbjct: 229 SQEFYWDTQY 238
>gi|52425081|ref|YP_088218.1| hypothetical protein MS1026 [Mannheimia succiniciproducens MBEL55E]
gi|52307133|gb|AAU37633.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 649
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 31/228 (13%)
Query: 1 MSQKNSLAINENQNSIFE---WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ + LA + NS E ++ +I+G+++ VL+ L SV +I+ DPPYN +
Sbjct: 72 LPPETLLAEDVEHNSKEENAHSQNVLIQGDNLEVLKHLKNAYRNSVKMIYIDPPYNTGSD 131
Query: 55 GQLYRPDHS---------------LVDAVTDSWDKF-SSFEAYDAFTRAWLLACRRVLKP 98
G +Y+ D + + + DK +S A+ F L R +LK
Sbjct: 132 GFVYQDDRKFTPEQLATLANITPDEAERILNFTDKGSNSHSAWLTFMYPRLYVARELLKE 191
Query: 99 NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+G +++ + + ++ + + K + N +G + +A
Sbjct: 192 DGVIFISIDDNEVAQLKLLCDEVFGEG---NFVAKLPTIMNLKGNN-----DEFGFAGTH 243
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
Y N ++++ N + + ++ L E + K G L T
Sbjct: 244 EFTLVYIKNKNSVEDLN-GIPLENEDLAEYSKEDEIGKYKQGATLMRT 290
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 23/171 (13%)
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC---SGSE 193
M R + + + + + + + +S + P +G+
Sbjct: 337 MSWRRSPETLSKTFSEFIIKKTSSGISFYKKQRLEEDLEKGKKPKSLFYKPQYSSGNGTT 396
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRS 247
L + G+++ KP LL + D+ILD F GSG++ + R
Sbjct: 397 LLESLFGKRIFNNPKPIELLKDFISIGMGKNDLILDFFAGSGSTAHAVMQLNAEDGGNRQ 456
Query: 248 FIGIEM--------------KQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
FI +++ + DI RI + +G ++
Sbjct: 457 FILVQLPEQTDTKSEAYKAGYKTIFDITKARIEKSAVKIREDFPDASGAKS 507
>gi|301029971|ref|ZP_07192957.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
gi|299877231|gb|EFI85442.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
Length = 172
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/209 (21%), Positives = 73/209 (34%), Gaps = 41/209 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ V D W + +S
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK N + ++ I R + F ++ +V+ K+ +
Sbjct: 57 ---------EMYRVLKKNALMVSFYGWNRIDRFMAAWKRAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 SAYVAYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ HPT+KP L ++ S T P I+LDP
Sbjct: 142 RHHPTEKPVTSLQPLIESFTHPNAIVLDP 170
>gi|189460175|ref|ZP_03008960.1| hypothetical protein BACCOP_00811 [Bacteroides coprocola DSM 17136]
gi|189433036|gb|EDV02021.1| hypothetical protein BACCOP_00811 [Bacteroides coprocola DSM 17136]
Length = 634
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 20/221 (9%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ E+ ++ I+G+++ VL+ L V +I+ DPPYN +
Sbjct: 89 PVVEDSVDWDNTQNLYIEGDNLEVLKLLQKSYMGKVKMIYIDPPYNTGNDFVYDDDFAVS 148
Query: 65 VDAVT---------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
D ++ + + L+ + +L +G++++ H
Sbjct: 149 QDDYDLFSGNVDELGNRYRKNTESNGRFHSDWCSMMYPRLMVAKSLLSDSGSIFLTLDDH 208
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-- 167
I ++ + N AH ++ S + + N
Sbjct: 209 EIVNGRKLMDEIFGEKSFISTVIWENFYGRSNAAAISLAHNYILIYSKAGEEWKNIRNLL 268
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
LK++ + +D P G + E L T K
Sbjct: 269 PRDLKSSEKYKNPDNDPRGPWRLGPIFASGERHEGLMYTIK 309
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + RS W ++ + + E T KP L+ +I+ S + D+I+D
Sbjct: 361 DGIVPRSIWTYDEVGHTQDAKREIQQIFPDEMPFDTPKPLKLIKQIIQISCRNTDVIMDF 420
Query: 231 FFGSGTSGAVAKKL------RRSFIGIEMKQDYIDIATKRIASVQ--PLGNIELTVLTGK 282
F GS T+ + R +I +++ ++ D + R A P E GK
Sbjct: 421 FSGSATTAHAVMQQNAEDDGNRKYIMVQLPEETPDDSAARKAGYNTIPEIAKERIRRAGK 480
Query: 283 RTEPRVAF 290
+ +
Sbjct: 481 KIKEESPL 488
>gi|225026246|ref|ZP_03715438.1| hypothetical protein EUBHAL_00487 [Eubacterium hallii DSM 3353]
gi|224956497|gb|EEG37706.1| hypothetical protein EUBHAL_00487 [Eubacterium hallii DSM 3353]
Length = 620
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 19/218 (8%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------ 55
E ++ I+G+++ VL+ L V +I+ DPPYN +
Sbjct: 88 EESVDWDNTENLYIEGDNLEVLKLLQESYLNKVKMIYIDPPYNTGNDFIYNDDFKMTSEE 147
Query: 56 ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
++ D ++ + + + L+ R +L +G +++ +
Sbjct: 148 YAEEISELDEDGNRMFKNTDTNGRFHSDWCSMIYSRLMLARNLLSDDGVIFISIDDNEQS 207
Query: 113 RIGTML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + + P + N+H+ ++ + +
Sbjct: 208 NLKKCCEEIFGEKNFVAQLIWERAFAPKNDAKYISNSHDYILMFAKNINNFVIGRLPRTS 267
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+A +D S + ++ + P
Sbjct: 268 EANARYSNPDNDPRGVWQSDNLTVKTYSPSGDYSITTP 305
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRI-LVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
GS+ L + KP LL R+ ++++ K I+LD F GS T+ ++
Sbjct: 375 GSQELIKIMDGGVFDGPKPTRLLKRLMILANLKENSIVLDFFSGSATTAHALMEVN 430
>gi|119359933|dbj|BAF41976.1| cellulase [uncultured bacterium]
Length = 375
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/279 (16%), Positives = 78/279 (27%), Gaps = 78/279 (27%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ I++G+ I L LP V PPY + V + E
Sbjct: 2 KNVILQGDVIEALRSLPDGFVHTCVTSPPYWGLRDY-----------GVEGQIGLEPTPE 50
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
Y RRVL+ +GTLW+ +
Sbjct: 51 EYIEKMVEVFREVRRVLRDDGTLWLNLGDSYVGSGKGPSGKSAKVHATKDGRQTMNNRVV 110
Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP- 157
+R+ LQ +++ +DI+W K N MP R AHE + S
Sbjct: 111 PYGLKPKDLVGIPWRVALALQADGWYLRSDIIWHKPNAMPESVKDRPTKAHEYIFLLSKS 170
Query: 158 ------------------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER----L 195
+ + A+ + + ++R +
Sbjct: 171 PRYYYDADAIREDAIYQEKRNGRVGAYQNRAIFHKGDGTTPTGVATRDLSKRNKRTVWSI 230
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
K + H P L+ +++ + P G+
Sbjct: 231 PTKPFKGAHFAVFPPDLIEPCILAGSPEKAC---PHCGA 266
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
I+LDPFFGSGT+G VA+K R ++GIE+ +YI+IA KR+
Sbjct: 331 GIVLDPFFGSGTTGLVAQKHGRDWVGIELNPEYIEIAKKRLE 372
>gi|15611696|ref|NP_223347.1| putative type II DNA modification enzyme (methyltransferase)
[Helicobacter pylori J99]
gi|4155180|gb|AAD06206.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 52/268 (19%), Positives = 86/268 (32%), Gaps = 50/268 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ SV+LIF PPY Y+ +++ Y
Sbjct: 146 LLVGDNAQTLNKIAPSSVNLIFTSPPYYNARIYSDYK-----------------NYKDYL 188
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ L AC RVL+ + + S + + IL D + +
Sbjct: 189 SAMSQSLKACFRVLEEGRFIIINVSPIITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 248
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 249 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 306
Query: 196 RNKDGE------------------------KLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ K HP PE+L R+L + +++ DPF
Sbjct: 307 KPIKQNHTLFGKKELPIETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDPF 366
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GSGT G VAK + R + E Y
Sbjct: 367 AGSGTFGMVAKSMGRIPLLCEQHPKYAQ 394
>gi|309811426|ref|ZP_07705213.1| DNA (cytosine-5-)-methyltransferase [Dermacoccus sp. Ellin185]
gi|308434733|gb|EFP58578.1| DNA (cytosine-5-)-methyltransferase [Dermacoccus sp. Ellin185]
Length = 643
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 23/168 (13%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---QLYRPDHSL 64
EN ++ I+G+++ VL+ L + LI+ DPPYN + YR
Sbjct: 83 ENSKDWDTTQNVFIEGDNLEVLKILQKHYHAKIKLIYIDPPYNTGKDFVYPDNYREGLQT 142
Query: 65 VDAVT---------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
T ++ D A+ L R +LK +G +++ +
Sbjct: 143 YLEYTGLVGDDGKAKSTSARNTSDNPHYHSAWLNMMYPRLKLARNLLKDDGVIFISIDDN 202
Query: 110 NIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ + +L + + + +W + N +NA L +A
Sbjct: 203 EVANLRRVLDEVFGEANFIENYIWESNFRPDNSSRIERENAQHVLCYA 250
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAK------ 242
G+ +R G+ + KP LL ++ S T I+LD F GS ++
Sbjct: 383 GNAEIRGLFGDAVFNHPKPTTLLKYLINSVTSDDSDAIVLDFFAGSASTAHAVLALNASD 442
Query: 243 KLRRSFIGIEM 253
RR F+ +++
Sbjct: 443 NGRRHFVAVQL 453
>gi|86211167|gb|ABC87269.1| M.NotI DNA methyltransferase [Nocardia otitidiscaviarum]
Length = 353
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 60/307 (19%), Positives = 100/307 (32%), Gaps = 79/307 (25%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA---- 80
+G++ + L +S+DLI PPY + H + V D W +
Sbjct: 58 QGDAYDLASGLDPQSIDLIITSPPYW-----GMRTYGHDHSEDVLDEWVAEGNHATDVPP 112
Query: 81 -------------------YDAFTRAWLLACRRVLKPNGTLWV----------------- 104
+ + R LK G++WV
Sbjct: 113 YEWYREHGGLLGMEPIPEWFISHLVEIFERLRPALKLGGSVWVNLGDTYFARWSSIRSDG 172
Query: 105 ---------------IGSYHN-------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+G Y R +Q+ + + ND++W K N P
Sbjct: 173 RQGLGDNPRTRRKTPMGGYRQEKQLMLIPSRFAIAMQDKRWILRNDLIWHKPNVAPRPEK 232
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R + AHE PK + YD + + + + G
Sbjct: 233 DRLRLAHEHFFHFVLRPKEGRAKYYYDTSAVEEGTRDVVTVNV------------RSGSD 280
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H P L+ + SS+ G ++LDPF G+G + VA +L RS IG E+ +++ AT
Sbjct: 281 GHSATFPPDLIRPRIESSSPVGGLVLDPFAGTGRALGVAAELGRSAIGFELSEEFTQAAT 340
Query: 263 KRIASVQ 269
+ +
Sbjct: 341 RNAEASA 347
>gi|188591328|ref|YP_001795927.1| restriction modification Type III methylase [Cupriavidus
taiwanensis]
gi|170938723|emb|CAP63709.1| restriction modification Type III methylase [Cupriavidus
taiwanensis LMG 19424]
Length = 685
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 19/164 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV-------TD 70
+ I+G+++ VL+ L V +I+ DPPYN ++ +
Sbjct: 109 NLFIEGDNLEVLKLLQKSYYGKVKMIYIDPPYNTGNEFIYPDNYSESLETYLAYAKLTDE 168
Query: 71 SWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+F++ A + L R +L +GT++V H I + ++ +
Sbjct: 169 EGKRFATNTASEGRFHTKWLNMMYPRLYLARNLLTEDGTIFVSIDEHEIENLNRLMDEIY 228
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
N R HE ++ + +
Sbjct: 229 GESNRIATIVWKGATDN-NPTRVAVEHEYIVCFAKDISRCPAVW 271
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 8/156 (5%)
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
G Y ++ + + ++ +P R + + LI +T
Sbjct: 327 GVYTGSRKVHNPKPGGYVYRVEHPETGENCVLPANGYRFPEERMKELIQQKKIIFGDDHT 386
Query: 166 FNYDALKAANEDVQMRS--DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
+ + + S L +E R K+ KP LL+ I
Sbjct: 387 QIVQIKEYLKDFEEKLSSVIHLDSRAGANEIGRLLGNRKVFTNPKPYELLAYIFDFQLDN 446
Query: 224 GDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
GDI+LD F GS S L R FI +++
Sbjct: 447 GDILLDFFAGSCASAQAVMDLNARDGAKRKFIMVQL 482
>gi|85717134|ref|ZP_01048093.1| possible DNA methylase [Nitrobacter sp. Nb-311A]
gi|85696025|gb|EAQ33924.1| possible DNA methylase [Nitrobacter sp. Nb-311A]
Length = 897
Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL---------------- 57
W +++I G+S+ V+ L SV I+ DPPY ++
Sbjct: 177 WTNRLILGDSLQVMNSLLEYEGMGNSVQTIYFDPPYGVRYGSNFQPFVRRRKVEHGKDEE 236
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ + +V A D+W+ +Y + R R +L G+++V S N+ + +
Sbjct: 237 FSREPEMVKAYRDTWELGR--HSYLTYMRDRCRLARDLLTDTGSIFVQISDENLHLVRAV 294
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
L + V MP G+ + L W + S Y +
Sbjct: 295 LDEVFGEENFVAVINFKTMMPLESGKIES-VVDYLCWYAKSKPIMKYHNIW 344
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 66/215 (30%), Gaps = 22/215 (10%)
Query: 73 DKFSSFEAYDAF---TRAWLLACRRVLKPN---GTLWVIGSYHNIFRIGTMLQNLNFWIL 126
K S Y + ++ + +K N G+ +V R + +
Sbjct: 319 GKIESVVDYLCWYAKSKPIMKYHNIWVKKNVGKGSEFVFADDGGPDRHRRLHKEEMDDFD 378
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWA------SPSPKAKGYTFNYDALKAANED--- 177
N + + + I + K+ T + A
Sbjct: 379 NTASKNNVFKRSDLASSGYTPSCTFPIQFDGQTFTTKRGKSWRTTKDGVARLEQQHRLFV 438
Query: 178 -------VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
D+ + G + + Q ++ R + ++ PGD++ D
Sbjct: 439 LGQKLYFKMYLRDFGYGSLINQWTDTIEFGSRSYVVQTTPTVIERCINMTSDPGDLVFDL 498
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
GSGT+ A+K R +I + + + +A +R+
Sbjct: 499 TCGSGTTAYCAEKWGRRWITCDTSRVPLALARQRL 533
>gi|86136192|ref|ZP_01054771.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
gi|85827066|gb|EAQ47262.1| DNA methylase N-4/N-6 [Roseobacter sp. MED193]
Length = 410
Score = 89.3 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 47/254 (18%), Positives = 87/254 (34%), Gaps = 44/254 (17%)
Query: 20 KDKIIKGNS---------ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
K +++ G++ + + L L+ DPPY ++ + +R D
Sbjct: 164 KHRLLCGDATVATDVGRVLDGVTPL------LMVTDPPYGVEYD-PSWRNDTGAAKTKRT 216
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ L P +V + + L+ F I + I+
Sbjct: 217 GKVLNDDRADWRE---------AWALFPGDVAYVWHGALHATTVADSLEVSGFNIRSQII 267
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
W K + + RG L + K +
Sbjct: 268 WAKDRLILS-RGDYHWQHEPCLYAVKKTGKGHWAGDRKQTTLWQIAN------------- 313
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+++D + +H TQKP + R +++++ PG + +PF GSGT+ A R G
Sbjct: 314 -----KDQDADTVHGTQKPVECMRRPILNNSSPGQAVYEPFMGSGTTLIAAATTGRVCYG 368
Query: 251 IEMKQDYIDIATKR 264
IE+ Y+D+A R
Sbjct: 369 IELNPAYVDVAVAR 382
>gi|18450312|ref|NP_569183.1| hypothetical protein pli0029 [Listeria innocua Clip11262]
gi|16415813|emb|CAC42027.1| pli0029 [Listeria innocua Clip11262]
Length = 355
Score = 89.3 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 68/209 (32%), Gaps = 18/209 (8%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------GQLYRPD 61
E + ++ I G+++ L+ L +D+I+ DPPYN + + + +
Sbjct: 67 EESVNFEGSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTKKE 126
Query: 62 HSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ L + + D + L R +L +G ++V + I
Sbjct: 127 NDLSEGILDEEGDRLVKNEKSNGRYHSDWLTMIYPRLKLARNLLSDSGIIFVSIDENEIA 186
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ +L + P + HE ++ A+ + + K
Sbjct: 187 NLELLLTEIFGENNLAGTIVWDKRNPKGDSKGVSMQHEYIVAAAKNINIFSEFKEFKRPK 246
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGE 201
E + +S + + L + + E
Sbjct: 247 KNAEIILNKSKEIFKKINDKFTLSDANEE 275
>gi|47092613|ref|ZP_00230401.1| type III restriction system methylase [Listeria monocytogenes str.
4b H7858]
gi|47019041|gb|EAL09786.1| type III restriction system methylase [Listeria monocytogenes str.
4b H7858]
Length = 423
Score = 89.3 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 68/209 (32%), Gaps = 18/209 (8%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------GQLYRPD 61
E + ++ I G+++ L+ L +D+I+ DPPYN + + + +
Sbjct: 67 EESVNFEGSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTKKE 126
Query: 62 HSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ L + + D + L R +L +G ++V + I
Sbjct: 127 NDLSEGILDEEGDRLVKNEKSNGRYHSDWLTMIYPRLKLARNLLSDSGIIFVSIDENEIA 186
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ +L + P + HE ++ A+ + + K
Sbjct: 187 NLELLLTEIFGENNLAGTIVWDKRNPKGDSKGVSMQHEYIVAAAKNINIFSEFKEFKRPK 246
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGE 201
E + +S + + L + + E
Sbjct: 247 KNAEIILNKSKEIFKKINDKFTLSDANEE 275
>gi|168181366|ref|ZP_02616030.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
gi|168184214|ref|ZP_02618878.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
gi|182672690|gb|EDT84651.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
gi|182675431|gb|EDT87392.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum Bf]
Length = 268
Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/279 (17%), Positives = 100/279 (35%), Gaps = 27/279 (9%)
Query: 14 NSIFEWKDKIIKGNSISVLEK--LPAKSVDLIFADPPYNLQL-----------NGQLYRP 60
+ + K ++ ++ ++ +P L+ AD PYN+ G
Sbjct: 2 ENNKKIKTELYN-DNFQNYKRYNIP--KAQLVIADIPYNIGKNAYGSNPEWYIGGNNKNG 58
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + D+ + Y F L+ + + V S+ I + +
Sbjct: 59 ESKKAGKTFFNTDENFNIAEYFHFCNRLLIKEPKERGKAPAMIVFCSFEQIPTVIEYGKK 118
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
F + + K+ + ++ A+ D L N +
Sbjct: 119 HGFKNSYPLFFIKNYSAQVLKANMK------IVGAT----EHAVVLYRDKLPKFNNGKKE 168
Query: 181 RSDWLIPI-CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ +R K+ K+HPTQKP ALL +++ T GD+++DP G G++
Sbjct: 169 TGKGKMIFNWFEWKRDSKKEYPKVHPTQKPIALLKQLIEIFTDEGDVVIDPVAGGGSTLR 228
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
+L RS G E+ +++ A +++ +L++
Sbjct: 229 ACMELNRSSYGFEVSKEFYKKAQEQMLIKNKAECEQLSI 267
>gi|325283867|ref|YP_004256408.1| DNA methylase N-4/N-6 domain-containing protein [Deinococcus
proteolyticus MRP]
gi|324315676|gb|ADY26791.1| DNA methylase N-4/N-6 domain protein [Deinococcus proteolyticus
MRP]
Length = 613
Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 14/217 (6%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRP 60
+ L + + ++ +I+G+++ V+ L VDLI ADPPYN + R
Sbjct: 20 SQKILKEFSAGSKQAKLENLLIEGDNLQVMASLYRYRGQVDLIIADPPYNTGNDF---RY 76
Query: 61 DHSLVDAVTD-------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ D D + D + + F L + +L+P G V +FR
Sbjct: 77 NDRWNDDPNDPDPGQLVTSDDGARHTKWMRFMAPRLEMMKAMLRPGGVCAVCIDERELFR 136
Query: 114 IGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+G ++ + I+ + + A E ++ + + T + +
Sbjct: 137 LGMLMDDTFGESNRLAIINWQKSYSAKNDSAHVSTATEYVLVYARVREKAK-TGLLERTE 195
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ N + SG + + + Q P
Sbjct: 196 SMNARYRSVDGDPHVWRSGDLGAKPHAKPEDYGIQSP 232
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 18/134 (13%)
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS------ERLRNKDGEKLHP 205
L K + A + E + + S + SG E
Sbjct: 327 LKRYLKDVKQGKVPLTFWADEEYEEPLTLGSQSWVHAESGHSQAGITELAEIIGSRHGFE 386
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM------ 253
T KP L+++I+ ++LDPF GSGT+G K+ R FI IE
Sbjct: 387 TVKPLKLITKIIQLWCPSNGLVLDPFAGSGTTGHAVLKMNHDTGSSRKFILIEQSRPERG 446
Query: 254 KQDYIDIATKRIAS 267
+ +R+
Sbjct: 447 DPYARTLTAERLKR 460
>gi|209963408|ref|YP_002296323.1| DNA methylase, putative [Rhodospirillum centenum SW]
gi|209956874|gb|ACI97510.1| DNA methylase, putative [Rhodospirillum centenum SW]
Length = 461
Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/291 (16%), Positives = 87/291 (29%), Gaps = 54/291 (18%)
Query: 21 DKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G+S V + L S L F PPY Q +
Sbjct: 171 HRLLCGDSTDPAAVAQVLGGDSAALCFTSPPYGQQRDYTTG------------------G 212
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILND-------I 129
+D+ + + P G + V +G H + W+
Sbjct: 213 IARWDSLMQRVFALL--PMAPEGQVLVNLGLIHRDGEWLPYWSDWLDWMRTQGWRRFGLY 270
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK----------------- 172
VW + +P G R + E + + +
Sbjct: 271 VWDQGPGLPGDWGGRLAPSFEFVFHFNRQGRKPNKIVPCKYAGLDTHLRADGHSTAMRKA 330
Query: 173 ------AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ ++ + R + + E HP P AL IL + GD+
Sbjct: 331 DGTVGAWTHAGQPTQTHRIPDSVIRIGRHKARGIEVEHPAVFPVALPELILNAYADAGDV 390
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
+ +PF GSGT+ ++ R +++ Y+D+A +R P L
Sbjct: 391 VYEPFSGSGTTLIAGERTGRRVCAVDLAPAYVDVAVRRWNEQFPASPARLE 441
>gi|161504452|ref|YP_001571564.1| hypothetical protein SARI_02565 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865799|gb|ABX22422.1| hypothetical protein SARI_02565 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 652
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA+N+N + + + G+++ VL L +VD+I+ DPPYN +G
Sbjct: 95 EHNTLAVNKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDG-FVY 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEHANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSTQGEYILVYAK 261
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + I+LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKNGIVLDFFAGSGTTAHAVMALNEEDGGQRAFILCTLDQ 448
>gi|296136000|ref|YP_003643242.1| DNA methylase N-4/N-6 domain protein [Thiomonas intermedia K12]
gi|295796122|gb|ADG30912.1| DNA methylase N-4/N-6 domain protein [Thiomonas intermedia K12]
Length = 508
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 63/190 (33%), Gaps = 20/190 (10%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L A V IF DPPYN Q S + D +
Sbjct: 36 NLLIQGDNLLALKALIPFYAGQVKCIFIDPPYNTQ----------SAFEHYDDKLE---- 81
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + L+ R +L +G++WV + + ++ +
Sbjct: 82 HSQWLSMMYPRLVLLRELLAEDGSIWVTIDDREVHYLKVLIDEVFGRANFVANMIWEKRT 141
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
R F H+ L+ + S N N +V R G + +
Sbjct: 142 SRENRRVFSFNHDHLLVCARSKGQFELVRN---PLGLNAEVLARYKNPDDDPRGPWQSVS 198
Query: 198 KDGEKLHPTQ 207
+ + H T
Sbjct: 199 ANAQAGHATP 208
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+ KPE LLSRI+ +T PGD++LD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 300 VFDNPKPEGLLSRIVHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHARTHCI 359
Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
R+ + G +E R G+ +A G+I+A V
Sbjct: 360 PRL-------QKVIDGEQGGISEAVGWKGGGGFR-FYTLGETAFDAHGHINAAVR 406
>gi|15838562|ref|NP_299250.1| methyltransferase [Xylella fastidiosa 9a5c]
gi|9107074|gb|AAF84770.1|AE004016_4 methyltransferase [Xylella fastidiosa 9a5c]
Length = 534
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 11/191 (5%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + W + II+G++ L L ++ I+ DPPYN +Y D
Sbjct: 53 ELSHGAAPWPNLIIEGDNFDALRALRMTHRGAIRCIYIDPPYNTGNRDFVY------NDC 106
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
D ++ + F L + +L +G ++V + +FR+G ++ +
Sbjct: 107 FIDKTHRYR-HSLWLEFMYRRLQLAKELLADDGVIFVSIDDNELFRLGMLMDRVFGEQNF 165
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG-YTFNYDALKAANEDVQMRSDWLI 186
+ ++ + AH + + + DA K N D R W+
Sbjct: 166 VANFIWNHRKSSQNDTDVSLAHNYTLCYARTRDRFSLNPLPVDADKFNNTDGDQRGPWVA 225
Query: 187 PICSGSERLRN 197
+N
Sbjct: 226 DPFDAPNIRKN 236
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------ 245
E + DGEK+ T KP +L+ RIL +T +LD F GSGT+ KL
Sbjct: 315 KELMAIFDGEKMFNTPKPVSLIERILSVATDKEAWVLDFFAGSGTTAHAVAKLNAEDGGH 374
Query: 246 RSFIGIEM 253
R FI I
Sbjct: 375 RRFILISN 382
>gi|206603420|gb|EDZ39900.1| putative type III restriction-modification system, methylation
subunit [Leptospirillum sp. Group II '5-way CG']
Length = 856
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 23/200 (11%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL--YRPDHSLVDAVTD 70
W +++I G+S+ V+ L V +I+ DPPY ++ + + D +
Sbjct: 122 NWSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYIDPPYGIRYGSNFQPFVNKRDVKDGKDE 181
Query: 71 SWDKFS------------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
++ +Y F R LL R +L +G+ +V S N+ + ++
Sbjct: 182 DLNQEPETLKAFRDTWEVGIHSYLTFLRDRLLLARELLHESGSCFVQISDENVHHVRELM 241
Query: 119 QN-LNFWILNDIVWRKSNPMPNFRGRRFQNAH--ETLIWASPSPKAKGYT-FNYDALKAA 174
++ + + + S Y N + A
Sbjct: 242 DEVFGNDNFCGMISFRKTGAFESVLLGRTSDYLLWYACNRSKVKYRGIYREKNPEEGTGA 301
Query: 175 NEDVQMRSDWLIPICSGSER 194
+ SG ER
Sbjct: 302 YYRWVEEPNVNRRPISGEER 321
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 22/146 (15%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
G ++ Q ++ R L+ ++ PGD++ DP GSGT+ VA++ R +I + +
Sbjct: 414 GYSGASIYVVQTSTKVIERCLLMTSDPGDLVFDPTCGSGTTAYVAEQWGRRWITCDTSRV 473
Query: 257 YIDIATKRIASVQ------PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG-------- 302
+ +A +R+ + + ++ +T P + + I+ G
Sbjct: 474 ALTLAKQRLMTASFDYYELARPDEGVSSGFQYKTVPHITLKSIANNPEIKEGMTREEIDR 533
Query: 303 --------QILTNAQGNISATVCADG 320
+ L + S V G
Sbjct: 534 AIKKYADQETLYDQPYVDSKKVRVTG 559
>gi|224372986|ref|YP_002607358.1| DNA methylase [Nautilia profundicola AmH]
gi|223590019|gb|ACM93755.1| DNA methylase [Nautilia profundicola AmH]
Length = 352
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/278 (19%), Positives = 105/278 (37%), Gaps = 26/278 (9%)
Query: 34 KLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
++ +S+D I PPY +++ + + + + + + ++E C
Sbjct: 16 QINNESIDFILTSPPYPMIEMWDETFFKLNQEIKNQFNKKNYRLAYELMHNELNKTWKEC 75
Query: 93 RRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
RVLKP G + + + N +I +QNL L I+WRK++ PN
Sbjct: 76 YRVLKPGGIIAINIGDATRTLNKNFQLFTNHVKIIEYMQNLGMQSLPPIIWRKTSNKPNK 135
Query: 141 ---RGRRFQNA-----HETLIWASPSPKAKGYTF----NYDALKAANEDVQMRSDWLIPI 188
G NA HE ++ K K + E + SD I
Sbjct: 136 FMGSGMLPVNAYVTLEHEYILIFRKGEKRKFNKNEIIRRRKSAFFWEERNKWFSDIWKDI 195
Query: 189 CSGSERL-RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
++ + + + P L R++ + D + DPF G+GT+ + L R+
Sbjct: 196 VGENQTIDKYYKTNRDRNAAFPLELSLRLIHMFSIYEDTVFDPFLGTGTTTIASAVLGRN 255
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
IG E+ + ++ +RI +++ + + +
Sbjct: 256 SIGYEIDTSFKNLIKERINNIKTITEQYINNRINSHKK 293
>gi|323344838|ref|ZP_08085062.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
gi|323094108|gb|EFZ36685.1| DNA methylase N-4/N-6 [Prevotella oralis ATCC 33269]
Length = 193
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 33/187 (17%)
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + L+ L ++ DI+W K+N MP R +HE + S +K Y F+++A+
Sbjct: 6 WMLAFSLRPLGCYLRQDIIWNKTNAMPESVKDRCTRSHEYIFLLSK---SKTYYFDHEAM 62
Query: 172 ------------------------------KAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + +
Sbjct: 63 REPAVYGPKDSKNILSARYGGKKYTAMPEKFYRTKGKNAYAYTGYKNKRDVWTVSVRPFS 122
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
H PE L++ +++ G I+LDPF GSGT+ VA + R+FIG E+ YIDIA
Sbjct: 123 SAHFATFPEKLITPCILAGCPEGGIVLDPFMGSGTTAKVALEHNRNFIGFELNPSYIDIA 182
Query: 262 TKRIASV 268
+R+
Sbjct: 183 KERLRDK 189
>gi|300920848|ref|ZP_07137244.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
gi|300412154|gb|EFJ95464.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
Length = 646
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/217 (11%), Positives = 63/217 (29%), Gaps = 25/217 (11%)
Query: 18 EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
K+ +I+G+++ VL+ L V LI+ DPPYN + + + +
Sbjct: 109 NSKNLMIEGDNLEVLKLLQKSYSGKVKLIYIDPPYNTGKDFVYPDNFQDNMKNYLEITGQ 168
Query: 75 FSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-Q 119
+ + L R +L +G +++ I + + +
Sbjct: 169 IENGKKISSNIEKGGRFHTNWLNMIFPRLHLARNLLTEDGVIFISMDDSEIDNLKKICSE 228
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE--- 176
+ + P F + H+ ++ + + K ++
Sbjct: 229 IFGDDNFIANIVWQKKYSPQNDATYFSDMHDHILVYAKNAKLAKNQEKGWSIDLLPRTDS 288
Query: 177 ----DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D +G ++ + P
Sbjct: 289 QNKAYKNYDNDPRGEWKAGDLSVKTYSKANDYEITTP 325
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 178 VQMRSDWLIPICSGSERLRN--KDGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFG 233
+ G + L+ K + T KP L+ RIL +T I+LD F G
Sbjct: 381 TWWTYQEVGHNQEGKQELKKIMKGDDIFFDTPKPVKLIKRILDLATNKDKNAIVLDFFAG 440
Query: 234 SGTSGAVAKKLR------RSFIGIEM 253
SGT+ + R FI +++
Sbjct: 441 SGTTAQAVMEKNLEDNGSRRFILVQL 466
>gi|258592788|emb|CBE69097.1| putative DNA methylase [NC10 bacterium 'Dutch sediment']
Length = 940
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 24/169 (14%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
W +++I G+S+ V+ L V IF DPPY ++ N S
Sbjct: 141 NWSNRMILGDSLQVMASLAEREGLRGKVQCIFFDPPYGIKFNSNFQWSTTSRDVKDGKAD 200
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
V A D+W +Y + R L R +L +G+++V N+ R+
Sbjct: 201 HITREPEQVKAFRDTWR--DGIHSYLTYLRDRLAVARDLLTDSGSIFVQIGDENVHRVRA 258
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
++ + F N +V F N + ++W + Y
Sbjct: 259 VMDEV-FGEKNFVVLISFQKTGGFESEFLSNTVDYVLWYLKERNSAKYR 306
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 165 TFNYDALKAANEDVQM--RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
T N K DV M +D G+ER+ + Q ++ R ++ +T
Sbjct: 404 TANTIRYKRFVGDVPMLPITDRWESTQIGTERI--------YVVQTAAEVIKRCILMTTD 455
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
PGD++LDP GSGT+ VA++ R +I I+ + + +A RI
Sbjct: 456 PGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARARI 498
>gi|168819047|ref|ZP_02831047.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205344195|gb|EDZ30959.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320084629|emb|CBY94420.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 652
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|16763737|ref|NP_459352.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|167992192|ref|ZP_02573290.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|197265322|ref|ZP_03165396.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|198243123|ref|YP_002214310.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|20141750|sp|P40814|T3MO_SALTY RecName: Full=Type III restriction-modification system StyLTI
enzyme mod; Short=M.StyLTI; AltName: Full=StyLTI
methyltransferase
gi|16418858|gb|AAL19311.1| DNA methylase; restriction system [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|197243577|gb|EDY26197.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|197937639|gb|ACH74972.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205329535|gb|EDZ16299.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261245640|emb|CBG23436.1| type III restriction-modification system enzyme (StyLTI)
modification methylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267992052|gb|ACY86937.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156969|emb|CBW16452.1| type III restriction-modification system enzyme (StyLTI)
modification methylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911388|dbj|BAJ35362.1| type III restriction-modification system StyLTI enzyme Mod
[Salmonella enterica subsp. enterica serovar Typhimurium
str. T000240]
gi|321225075|gb|EFX50136.1| Type III restriction-modification system methylation subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|323128670|gb|ADX16100.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|326622056|gb|EGE28401.1| DNA methylase [Salmonella enterica subsp. enterica serovar Dublin
str. 3246]
gi|332987305|gb|AEF06288.1| DNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 652
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|317181204|dbj|BAJ58990.1| Type III DNA modification enzyme [Helicobacter pylori F32]
Length = 439
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/218 (15%), Positives = 76/218 (34%), Gaps = 27/218 (12%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + +K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNKSTSKHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDNFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEVLKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ ++ + RK+ N HE L+ + + + +
Sbjct: 194 DNEAAQLKLLCDEIFGEGNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNKE---FIN 250
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
K +D S ++ + + +
Sbjct: 251 LLGGEKNLENYKNPDNDPNGMWVSADPSAKSGNIKTGY 288
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + SD + ++ L + + + K +++I+ +T+ GDIILD F GSGT
Sbjct: 354 DSLIFSDNCYMNQAATKELLSLELAEYFSYPKGVDFMAKIVEHATEKGDIILDFFAGSGT 413
Query: 237 SGAVAKKLR 245
+ +
Sbjct: 414 TAHAVLESN 422
>gi|306825918|ref|ZP_07459256.1| type III restriction-modification system methylation subunit
[Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304431850|gb|EFM34828.1| type III restriction-modification system methylation subunit
[Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 641
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 71/344 (20%), Positives = 109/344 (31%), Gaps = 90/344 (26%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPP-------------YN------- 50
+ I + + IIKGN++ L L V LI+ DPP YN
Sbjct: 174 SEIQDTDNLIIKGNNLLALYSLKERFAGKVKLIYIDPPYYFLKTKPTDTFTYNSNFSLSS 233
Query: 51 --------LQLNGQLYRPDHSLVDAVTDSWDKF-----SSFEAYDAFTRAWLLACRRVLK 97
L + QL D L +++D + + F R +
Sbjct: 234 WLTFLKNRLSIAYQLLSYDGLLFLSMSDEGTHYLKVMMDEIFGIENFIADVTWEARSSVS 293
Query: 98 PNGTLWVIGS------------YHNIFRIGTML------QNLNFWILNDIVWRKSNPMPN 139
+G + + N FR+ + N + N N
Sbjct: 294 SDGLFSMNSNHILVYAKNKDAIDKNDFRLALDIETFKYDDNDGRGPYRLEPFDAPNIRKN 353
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN------------------------ 175
+ + + NY+ A N
Sbjct: 354 LQYEITNPNTRDIYIPPKGRCWRTTKENYERWLADNRIRFGVNGTSKPQLKAYYSEVKMA 413
Query: 176 -EDVQMRSDWLIPICSGSERLRNKD-----------GEKLHPTQKPEALLSRILVSSTKP 223
+ S W I S + R N + GE++ KPE L+ R+L ST
Sbjct: 414 GKGKASSSIWTIQPNSITWRETNTNTSATKHQQELFGEEVFTNPKPEELIKRVLELSTNE 473
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GD++LD F GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 474 GDLVLDFFMGSGTTAAVAHKMNRQYIGIEQMDYIETVAVERLKK 517
>gi|200389670|ref|ZP_03216281.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199602115|gb|EDZ00661.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 652
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYTK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|204927143|ref|ZP_03218345.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204323808|gb|EDZ09003.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 652
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|238911510|ref|ZP_04655347.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Tennessee
str. CDC07-0191]
Length = 652
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|86149055|ref|ZP_01067287.1| type II dna modification enzyme [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85840413|gb|EAQ57670.1| type II dna modification enzyme [Campylobacter jejuni subsp. jejuni
CF93-6]
Length = 822
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/336 (17%), Positives = 112/336 (33%), Gaps = 69/336 (20%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPY---NLQL 53
+S++N + ++ ++ E + +++K ++ L L +DLI+ DPPY N
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPYNTGNDGF 414
Query: 54 NGQLYRPDHSLVDAVTDSWD--------KFSSFEAYDAFTRAWLLACRRVL--------- 96
S + + + D S F + D +A L +
Sbjct: 415 VYTDKFNHSSWLAMMKNRLDLAKEFLKNSGSIFISIDDNEQARLKILCDEVFGEENFVAN 474
Query: 97 ----------KPNGTLWVIGSYHNIFR--------IGTMLQNLNFWILNDIVWRKSNPMP 138
+ + V Y NI+ G N++ + ++ + P+
Sbjct: 475 VIWRKRAGGGNDSNHIAVEQEYINIYAKNIEHLKTYGIARTNISQYKKDEKGYYLEKPLN 534
Query: 139 NFRGRRFQNAHETL------------IWASPSPKAKGYTFNYDALKAANEDVQMRSDW-- 184
+ + H + S D + N D +
Sbjct: 535 DTSLQDSPGLHYDIKLPSGKILKGSEHQWKVSENTFYSRLERDEIIFKNNDKVYYKHYID 594
Query: 185 -------------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ + ++ K+ T KPE LL RI + ++LD F
Sbjct: 595 IASNLKPSSIWYDFVLNADATNEIKLNFENKIFDTPKPEKLLKRICDIGSNQNSLVLDFF 654
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSGT+ A A KL+R ++G+EM + + + R+
Sbjct: 655 VGSGTTIATAHKLKRKWLGVEMGEHFYKVIIPRMKK 690
>gi|168237461|ref|ZP_02662519.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194735291|ref|YP_002113386.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|194710793|gb|ACF90014.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197289591|gb|EDY28954.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 652
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|207855839|ref|YP_002242490.1| type III restriction-modification system enzyme modification
methylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|206707642|emb|CAR31926.1| type III restriction-modification system enzyme (StyLTI)
modification methylase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|168261225|ref|ZP_02683198.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205349940|gb|EDZ36571.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|304311921|ref|YP_003811519.1| Type III DNA modification methyltransferase [gamma proteobacterium
HdN1]
gi|301797654|emb|CBL45875.1| Type III DNA modification methyltransferase [gamma proteobacterium
HdN1]
Length = 662
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 17/152 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 107 NLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLELTGQVEG 166
Query: 69 -----TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+++ + L R +L+ +G L V I + ++ ++
Sbjct: 167 GQKISSNTEASGRFHTDWLNMMYPRLKLARNLLRDDGVLMVSVDDAEIDHMKSVCTDIFG 226
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ + +G + + A
Sbjct: 227 EENMLAILIWNKQHSQQQGVFKRYHEYVIALA 258
Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 29/134 (21%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
G + KP +++ + D++LD F GSGT+G ++ R +I +++
Sbjct: 408 GAAVFQNPKPVNMIADFVSWFANSDDLVLDFFSGSGTTGESVLRVNSTNGGSRRYILVQL 467
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ-GNI 312
+PL K + G + LT +
Sbjct: 468 --------------PEPLDPD---NKDQKTAANFCD-----QLGKPRSIAELTKERLRRA 505
Query: 313 SATVCADGTLISGT 326
+A V AD + +G
Sbjct: 506 AAKVKADNPMFAGD 519
>gi|62178968|ref|YP_215385.1| DNA methylase; restriction system [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224582195|ref|YP_002635993.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|62126601|gb|AAX64304.1| DNA methylase; restriction system [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224466722|gb|ACN44552.1| Type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|322713424|gb|EFZ04995.1| DNA methylase; restriction system [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|85703022|ref|ZP_01034126.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
gi|85671950|gb|EAQ26807.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
Length = 457
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 38/249 (15%)
Query: 21 DKIIKGNSI---SVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G++ V L V L+ DPPY + +Y PD +++
Sbjct: 210 HRLLCGDATSAADVARLLGD--VRPHLMVTDPPYGV-----MYDPDWRNRAGASETKRTG 262
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
W L P +V + + L F I + I+W K
Sbjct: 263 KVLND---DRADW--RAAWALFPGDVAYVWHGALHATTVAESLVASGFDIRSQIIWAKDR 317
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + HE +A + L +
Sbjct: 318 HV--LSRGHYHWQHEPAWYAVRAKGHWSGDRKQSTLWSIPN------------------- 356
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R++D E H TQKP + R +++++ PG ++ +PF GSGT+ A+ +R IE+
Sbjct: 357 RDQDAETSHGTQKPVECMRRPILNNSSPGQVVYEPFCGSGTTLIAAQSTKRIGFAIELDP 416
Query: 256 DYIDIATKR 264
Y+D+A R
Sbjct: 417 AYVDVAVLR 425
>gi|300088689|ref|YP_003759211.1| adenine-specific DNA-methyltransferase [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528422|gb|ADJ26890.1| Site-specific DNA-methyltransferase (adenine-specific)
[Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 632
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/205 (13%), Positives = 64/205 (31%), Gaps = 24/205 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP------- 60
E + ++ II+G+++ VL+ L V +I+ DPPYN +
Sbjct: 84 EESVNFDTTENLIIEGDNLEVLKLLQKSYLGKVKMIYIDPPYNTGNDFIYPDNYTESLQT 143
Query: 61 ----------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ D+ +F S + L R +L+ +G +++
Sbjct: 144 YLEYTGQVDAEGRKFGNNNDTDGRFHS--KWMNMMYPRLYLARNLLRADGVIFISVDDTE 201
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + + + + + HE +++ + + +
Sbjct: 202 VDNLKKICNEVFGEDNFLTQIVWKSRYNAAKEKHLAQVHEYILFYARNKDEIESIYLPTN 261
Query: 171 LKAANEDVQMRSDWLIPICSGSERL 195
+ N ++ G RL
Sbjct: 262 EEYLN--RYFKNQDEKYELRGPYRL 284
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 202 KLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
K P KP AL++ ++ ++ K D+ILD F GSGT+ L R
Sbjct: 387 KYFPFPKPTALITHLINIAGVKNDDLILDFFPGSGTTAHAIIALNR 432
>gi|300193|gb|AAB26533.1| StyLT1 restriction-modification system methylase subunit, StyLT1
Mod [Salmonella typhimurium, Peptide, 651 aa]
Length = 651
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 94 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYSDTVDMIYIDPPYNTGSDGFVY- 146
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 147 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 206
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 207 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 260
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 338 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 396
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 397 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 447
>gi|302206582|gb|ADL10924.1| Putative site-specific DNA-methyltransferase (adenine-specific)
[Corynebacterium pseudotuberculosis C231]
gi|308276825|gb|ADO26724.1| Putative site-specific DNA-methyltransferase [Corynebacterium
pseudotuberculosis I19]
Length = 656
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 18/163 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---- 63
+Q + ++ I G+++ L+ L A V I+ DPPYN +G +Y D
Sbjct: 86 NSQPENKDSENIYIVGDNLDALKHLLGSYAGKVKCIYIDPPYNTGSDGFVYNDDFGFTIP 145
Query: 64 -LVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
LV+ V + D+ S A+ F L + +L +G +++ +
Sbjct: 146 QLVEKVGLTEDEAERVLDLRGKSSHSAWLTFMYPRLQLAKELLADDGVIFISIDDNEQAN 205
Query: 114 IGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ + + ++NP H+ L+
Sbjct: 206 LRMLCDEVFGEQGFVASITVRNNPRGRQSNTSIAPVHDYLLVY 248
Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------L 244
G++ ++ + KP LL +L T G +I+D F GSGT+ + + L
Sbjct: 394 GTQEVKELLSSESASYPKPTPLLKEVLQLGTPQGGLIVDFFSGSGTTAEASWRLSAETGL 453
Query: 245 RRSFIGIEM-----------KQDYIDIATKRIASVQPLGNIELTVLTGKRTE-PRVAFNL 292
R FI +++ A R I K + +
Sbjct: 454 DRQFIMVQLPEVIDGESGSKTAKAAYKAGYRTIDEIGRERIRRASAKIKEETGADIDYGF 513
Query: 293 LVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
+ R GQ+L + ++ DGTL++G
Sbjct: 514 KLYRLNEPSGQVLDDL---LTFDPKQDGTLLAGD 544
>gi|300858879|ref|YP_003783862.1| hypothetical protein cpfrc_01462 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686333|gb|ADK29255.1| hypothetical protein cpfrc_01462 [Corynebacterium
pseudotuberculosis FRC41]
gi|302331137|gb|ADL21331.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
1002]
Length = 656
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 18/163 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---- 63
+Q + ++ I G+++ L+ L A V I+ DPPYN +G +Y D
Sbjct: 86 NSQPENKDSENIYIVGDNLDALKHLLGSYAGKVKCIYIDPPYNTGSDGFVYNDDFGFTIP 145
Query: 64 -LVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
LV+ V + D+ S A+ F L + +L +G +++ +
Sbjct: 146 QLVEKVGLTEDEAERVLDLRGKSSHSAWLTFMYPRLQLAKELLADDGVIFISIDDNEQAN 205
Query: 114 IGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ + + ++NP H+ L+
Sbjct: 206 LRMLCDEVFGEQGFVASITVRNNPRGRQSNTSIAPVHDYLLVY 248
Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------L 244
G++ ++ + KP LL +L T G +I+D F GSGT+ + + L
Sbjct: 394 GTQEVKELLSSESASYPKPTPLLKEVLQLGTPQGGLIVDFFSGSGTTAEASWRLSAETGL 453
Query: 245 RRSFIGIEM-----------KQDYIDIATKRIASVQPLGNIELTVLTGKRTE-PRVAFNL 292
R FI +++ A R I K + +
Sbjct: 454 DRQFIMVQLPEVIDGESGSKTAKAAYKAGYRTIDEIGRERIRRASAKIKEETGADIDYGF 513
Query: 293 LVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
+ R GQ+L + ++ DGTL++G
Sbjct: 514 KLYRLNEPSGQVLDDL---LTFDPKQDGTLLAGD 544
>gi|29566484|ref|NP_818050.1| gp77 [Mycobacterium phage Che9d]
gi|29425209|gb|AAN07995.1| gp77 [Mycobacterium phage Che9d]
Length = 217
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 52/250 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + + E L A D++ DPPY + A SW K A
Sbjct: 11 TLYHGDCLEITEWLAA---DVLVTDPPYGM---------------AFVSSWTKQKRPVAN 52
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D T A + V G++ + ++W K P
Sbjct: 53 DENTTHRDNALQEWGVEK-PAAVFGTWR---------VAKPANVRQVLIWDKRGAGPGMG 102
Query: 142 --GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F +HE + K + +++ D+
Sbjct: 103 DLTTAFGTSHEEIYLIGHWAKRSTRRGSVITTESSPSDLT-------------------- 142
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPT KP L+ I+ ++ P ++ DPF GSG++ A+ L R IG+E+++ Y +
Sbjct: 143 SRIGHPTPKPIGLMETIIAAA--PDGVVADPFAGSGSTLVAARNLGRKAIGVELEEKYCE 200
Query: 260 IATKRIASVQ 269
+ KR+ +
Sbjct: 201 LIAKRLDQMC 210
>gi|209963409|ref|YP_002296324.1| DNA methylase, putative [Rhodospirillum centenum SW]
gi|209956875|gb|ACI97511.1| DNA methylase, putative [Rhodospirillum centenum SW]
Length = 412
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 89/248 (35%), Gaps = 33/248 (13%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS- 76
+++ G++ V L L+ DPPY ++ + P V +
Sbjct: 169 HRLLCGDATGASDVERLLAGARPHLMVTDPPYGVEYD-----PSWRNAAGVAKTKRTGKV 223
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + + AW L P +V + + + L F I IVW KS
Sbjct: 224 ANDDRADWRDAW------ALFPGDVAYVWHAAIHATTVAESLIACGFDIRAQIVWSKSRF 277
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
RG K+ + + +S +G E
Sbjct: 278 ALG-RGDYHWQHEPCWYGVRKGAKSHW------------QGARDQSTLWSIAPAGGE--- 321
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
D H TQKP ++ R +V+++ GD++ +PF GSGT+ A+ + R +E+
Sbjct: 322 --DAATPHGTQKPVEVMRRPIVNNSARGDVLYEPFCGSGTTLIAAETVGRVCYALELDPT 379
Query: 257 YIDIATKR 264
Y D+ +R
Sbjct: 380 YCDVIVRR 387
>gi|296531888|ref|ZP_06894691.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
49957]
gi|296267754|gb|EFH13576.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
49957]
Length = 488
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 43/260 (16%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
L+F PPY Q + V+D +DA + L+ +
Sbjct: 225 LLFTSPPYGNQRDYTTG--------GVSD----------WDALMQGVFQHLDGALRRDAQ 266
Query: 102 LWVI-------GSYHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ V G + ++ ++ + W + +P R A E +
Sbjct: 267 VLVNLGLIHREGEWQPYWQGWLDWMRGQGWRRFGLYAWDQGPGLPGDWNGRLAPAFELVF 326
Query: 154 WASPSPKAKGYTFNYDALKAANED-----------------VQMRSDWLIPICSGSERLR 196
+ + N+ + ++ + R +
Sbjct: 327 HFNREARQANKIVPCKWAGTPNKGSGLRAADGEVKAYTHIGLPVQEMRIPDSVLRITRHK 386
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ E HP P AL ++ + T D++ +PF GSGT+ ++ R IE+
Sbjct: 387 GRGIETEHPAVFPVALPEFLMRAYTDECDVVFEPFGGSGTTILAGQRTGRRVRAIELAPA 446
Query: 257 YIDIATKRIASVQPLGNIEL 276
Y+D+A R + P + L
Sbjct: 447 YVDLAIARWRMLHPDLPVTL 466
>gi|16759336|ref|NP_454953.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
CT18]
gi|29142892|ref|NP_806234.1| Type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|197250580|ref|YP_002145337.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|213162991|ref|ZP_03348701.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
E00-7866]
gi|213417458|ref|ZP_03350600.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
E01-6750]
gi|213425167|ref|ZP_03357917.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
E02-1180]
gi|289826835|ref|ZP_06545745.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-3139]
gi|25347390|pir||AD0546 site-specific DNA-methyltransferase (adenine-specific) (EC
2.1.1.72) - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16501627|emb|CAD08812.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29138524|gb|AAO70094.1| Type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|197214283|gb|ACH51680.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|168465433|ref|ZP_02699315.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|195631678|gb|EDX50198.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|194443439|ref|YP_002039595.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194402102|gb|ACF62324.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|168232316|ref|ZP_02657374.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194469113|ref|ZP_03075097.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194455477|gb|EDX44316.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|205333351|gb|EDZ20115.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|188528291|ref|YP_001910978.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori Shi470]
gi|188144531|gb|ACD48948.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori Shi470]
Length = 633
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/222 (15%), Positives = 75/222 (33%), Gaps = 27/222 (12%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ ++ + RK+ N HE L + + + +
Sbjct: 194 DNQAAQLKLLCDEIFGERNFVADFIRKTKSTTNDAKTGVNYQHEFLFCYAKNKE---FVN 250
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
K +D S ++ D + + K
Sbjct: 251 LLGGEKNLENYKNPDNDPNGAWVSSDPTAKSGDIKTGYFVVK 292
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 139 NFRGRRFQNAHETLIWASPSPKA----KGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N + H + K Y + + + + + + + E
Sbjct: 313 NTMQKHIDEGHICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSDNCYMNQTATKEL 372
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR 245
L GE K + +I++ ST DIILD F GSGT+ +
Sbjct: 373 LSLGMGE-YFTYPKGVEFMKKIILHSTTPNSNDIILDFFAGSGTTAHAVLESN 424
>gi|322614638|gb|EFY11567.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315996572]
gi|322620157|gb|EFY17029.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-1]
gi|322623451|gb|EFY20290.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-3]
gi|322629251|gb|EFY26030.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-4]
gi|322631971|gb|EFY28725.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-1]
gi|322637291|gb|EFY33993.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-2]
gi|322642176|gb|EFY38785.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 531954]
gi|322653364|gb|EFY49697.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. CASC_09SCPH15965]
gi|322660487|gb|EFY56723.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 19N]
gi|322664639|gb|EFY60832.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 81038-01]
gi|322669308|gb|EFY65458.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. MD_MDA09249507]
gi|322670854|gb|EFY66987.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 414877]
gi|322678908|gb|EFY74963.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 366867]
gi|322681936|gb|EFY77961.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 413180]
gi|322688062|gb|EFY84028.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 446600]
gi|323194417|gb|EFZ79612.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609458-1]
gi|323197047|gb|EFZ82189.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556150-1]
gi|323203372|gb|EFZ88397.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609460]
gi|323206883|gb|EFZ91836.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 507440-20]
gi|323210347|gb|EFZ95239.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556152]
gi|323214589|gb|EFZ99340.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB101509-0077]
gi|323223146|gb|EGA07489.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB102109-0047]
gi|323224883|gb|EGA09146.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB110209-0055]
gi|323230087|gb|EGA14207.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB111609-0052]
gi|323233825|gb|EGA17914.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009083312]
gi|323238481|gb|EGA22539.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009085258]
gi|323244169|gb|EGA28178.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315731156]
gi|323246329|gb|EGA30312.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2009159199]
gi|323251955|gb|EGA35818.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008282]
gi|323257952|gb|EGA41631.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008283]
gi|323261577|gb|EGA45155.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008284]
gi|323265035|gb|EGA48534.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008285]
gi|323272598|gb|EGA56005.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008287]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|168240164|ref|ZP_02665096.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194451308|ref|YP_002044388.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194409612|gb|ACF69831.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|205340405|gb|EDZ27169.1| DNA methylase domain protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|260867515|ref|YP_003233917.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
gi|257763871|dbj|BAI35366.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
gi|323178009|gb|EFZ63591.1| DNA methylase family protein [Escherichia coli 1180]
Length = 352
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + E Y
Sbjct: 12 LINADCLEFMRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---AGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +K +L +I+ +S++PGD++ D F GSG++ A L R G+E++ + +
Sbjct: 283 HPCEKTAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQT 340
>gi|148826327|ref|YP_001291080.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae PittEE]
gi|148716487|gb|ABQ98697.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae PittEE]
Length = 713
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/221 (20%), Positives = 78/221 (35%), Gaps = 32/221 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPYN +G Y DKF
Sbjct: 202 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN-------------DKF- 247
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L R +L +G ++V + + ++ + + + +
Sbjct: 248 NHSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEIF--GRENFICCITCK 305
Query: 137 MPNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAANED----VQMRSDWLIP 187
+ + G F + E LI S S + Y + N Q ++
Sbjct: 306 VKSAGGLTTDTEMFFDCAEYLIVYSKSIDSLQYNSIKIQTEVINASSKTVKQYKNIINNI 365
Query: 188 ICSGSERLRNKDGEKLHPTQKP----EALLSRILVSSTKPG 224
S E + KD K + K E L + + T+
Sbjct: 366 DFSKKEFIAQKDEIKYYKIPKGSFNIETLPIKQIKQMTEKD 406
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+KPE LL RI+ ST DI+LD F GSGT+ AVA K+ R FI IE I +R
Sbjct: 512 NAKKPETLLQRIIEISTNENDIVLDFFAGSGTTAAVAMKMNRQFITIEQMDYIETITKER 571
Query: 265 IAS 267
+
Sbjct: 572 LKK 574
>gi|300784035|ref|YP_003764326.1| adenine-specific DNA-methyltransferase [Amycolatopsis mediterranei
U32]
gi|299793549|gb|ADJ43924.1| putative adenine-specific DNA-methyltransferase [Amycolatopsis
mediterranei U32]
Length = 345
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 61/340 (17%), Positives = 97/340 (28%), Gaps = 102/340 (30%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ G+ L +LP SVD + PPY + + +A+
Sbjct: 12 ILIGDVRQRLRELPDASVDCVITSPPYWALRDY-----------GHPGQIGAEPTVDAWA 60
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNI----------------FRIGTMLQNLNFWIL 126
A RVL P G LW+ R+ L + +
Sbjct: 61 DTIAAVCTELARVLTPTGALWLNLGDSFSRHEREGAAKKSLLLGPQRVALRLTASGWLLR 120
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPS----------------------PKAKGY 164
N ++W K NP P+ RF +HE L + KA
Sbjct: 121 NQVIWAKPNPTPSSVRDRFTASHELLYLLTRQSRYFFDLDAVREPARTAPAGSAVKAART 180
Query: 165 TFNYDALKAANEDVQMR----------------SDWLIPICSGSERLRNKDGEKLHPTQK 208
+A+ + N R S L + H
Sbjct: 181 YLTREAVPSLNGGSSPRVDLNQGLAQMKTTGLASHPLGKSPGDVWTIPTGSYRGAHFATF 240
Query: 209 PEALLSRILVSSTKPG-------------------------------------DIILDPF 231
P AL+ R L+++ +LDPF
Sbjct: 241 PLALVRRPLLTTCPERVCAVCDLPWRRTPQLVDGRQLATGPLTPSCPHRQFRAGRVLDPF 300
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
G+GT A+ R ++GIE+ + Y +A R+ + +
Sbjct: 301 MGAGTVALAAETYGRDWVGIELNEAYAALAEARLTAHRAQ 340
>gi|85859485|ref|YP_461687.1| type III restriction-modification system methylation subunit
[Syntrophus aciditrophicus SB]
gi|85722576|gb|ABC77519.1| type III restriction-modification system methylation subunit
[Syntrophus aciditrophicus SB]
Length = 643
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 18/160 (11%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------QLYRPDHSL 64
K+ I+G+++ L+ L V +I+ DPPYN + L R +
Sbjct: 99 KNLFIEGDNLEALKLLQETYLGKVKMIYVDPPYNTGNDFIYEDDFSENSDEFLKRSNQKD 158
Query: 65 VDA---VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + ++ + + L R +L+ +G +++ + + + +
Sbjct: 159 EEGNRLIANTEANGRFHSDWLSMIYPRLKLARNLLRDDGVIFISIDDNEVTNLQRACDEI 218
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
R F H+ ++ + +
Sbjct: 219 FGGANFVAQLTIIVKPEGRRYGFFAKTHDYILVYCKNHEY 258
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ SD I G+ L+ G+ + KP AL+ I + +ILD F GS T+
Sbjct: 381 KTVLSDKEIISNKGTRELQVLLGKGIFDFPKPVALIKLITTIGSDEHSLILDFFSGSATT 440
Query: 238 GAVAKK------LRRSFIGIEM 253
+ R FI +++
Sbjct: 441 AHAVIQLNAEDGGNRKFIMVQL 462
>gi|225869629|ref|YP_002745576.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
gi|225699033|emb|CAW92142.1| phage DNA methylase [Streptococcus equi subsp. equi 4047]
Length = 224
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 32/244 (13%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + ++ + P K DL DPPY + Y V +++
Sbjct: 6 NEDCMQLMARYPDKHFDLAIVDPPYFSGPEKRQYYGRKISPIGVKRVYEQ---------- 55
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
T W + + + +FR+ + G
Sbjct: 56 TTQWAIPGKDY------------FDELFRVSKNQIIWGVNYYDYPFGSGRIIWDKVNGSS 103
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ + + S A+ + + + N +Q +S + G+++L + +++H
Sbjct: 104 -SFSDCEIAYCSLHDSARLFRYMW------NGMMQGKSIAEGHVQQGNKKL---NEKRIH 153
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PTQKP L +L K GD ILD GS +S K+L ++G E+ + A R
Sbjct: 154 PTQKPVNLYIWLLQKYAKTGDKILDTHVGSASSLIACKELGFDYVGCELDTHIYNKAIDR 213
Query: 265 IASV 268
+
Sbjct: 214 LCEY 217
>gi|56414486|ref|YP_151561.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197363407|ref|YP_002143044.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
gi|56128743|gb|AAV78249.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197094884|emb|CAR60419.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 652
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|161615469|ref|YP_001589434.1| hypothetical protein SPAB_03240 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551843|ref|ZP_02345596.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|161364833|gb|ABX68601.1| hypothetical protein SPAB_03240 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|205323458|gb|EDZ11297.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 652
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 147
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 148 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 207
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 208 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 261
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 339 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 397
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 398 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 448
>gi|85703053|ref|ZP_01034157.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
gi|85671981|gb|EAQ26838.1| DNA methylase N-4/N-6 [Roseovarius sp. 217]
Length = 426
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 38/249 (15%)
Query: 21 DKIIKGNSI---SVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G++ V L V L+ DPPY + +Y PD +++
Sbjct: 179 HRLLCGDATSAADVARLLGD--VRPHLMVTDPPYGV-----MYDPDWRNRAGASETKRTG 231
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
W L P +V + + L F I + I+W K
Sbjct: 232 KVLND---DRADW--RAAWALFPGDVAYVWHGALHATTVAESLVASGFDIRSQIIWAKDR 286
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + HE +A + L +
Sbjct: 287 HV--LSRGHYHWQHEPAWYAVRAKGHWSGDRKQSTLWSIPN------------------- 325
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R++D E H TQKP + R +++++ PG +I +PF GSGT+ A+ +R IE+
Sbjct: 326 RDQDAETSHGTQKPVECMRRPILNNSSPGQVIYEPFCGSGTTLIAAQSAKRIGFAIELDP 385
Query: 256 DYIDIATKR 264
Y+D+A R
Sbjct: 386 TYVDVAVLR 394
>gi|325294788|ref|YP_004281302.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065236|gb|ADY73243.1| DNA methylase N-4/N-6 domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 860
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 102/320 (31%), Gaps = 70/320 (21%)
Query: 22 KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
++IK + L + + + I+ DPP+N + Y +
Sbjct: 439 RLIKSENWQALNTILPKHKEKIQTIYIDPPFNKEQEADYYYNVNYKDS------------ 486
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNP 136
+ + + +L G+++V Y+ + +L + N+I +++
Sbjct: 487 -TWITMLENRISLAKELLNEKGSIFVRCDYNGNMYVRMLLNEIFGKENFRNEIDIKRNQS 545
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED------------------- 177
+P E L + K D K D
Sbjct: 546 LPKTGDVNLIEETENLYVFGKTNKFYFINQLMDREKPKWVDLGTRPSDVEDNPPRVVEGK 605
Query: 178 --------VQMRSDWLIPICSGSERLRNKDGEK-------------------------LH 204
S I RL+ ++G+
Sbjct: 606 EFYPPKYRRWAYSQDNIDEMYAKGRLKIENGKIKILLDKRKLGSNWTDIPGYSTVPTWGF 665
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
T+ E LL R++ S+ DIILD F GSGT+ AVA KL+R +IG+E+ + + + R
Sbjct: 666 KTENSEVLLKRVIQSTLNERDIILDFFLGSGTTTAVAHKLKRKWIGVELGEHFYSVILPR 725
Query: 265 IASVQPLGNIELTVLTGKRT 284
+ V ++ +
Sbjct: 726 MKKVLFYDKSGISKDKDVKE 745
>gi|15801505|ref|NP_287522.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli O157:H7 EDL933]
gi|15831034|ref|NP_309807.1| DNA methylase [Escherichia coli O157:H7 str. Sakai]
gi|195939953|ref|ZP_03085335.1| putative DNA methylase [Escherichia coli O157:H7 str. EC4024]
gi|208810880|ref|ZP_03252713.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
gi|208816213|ref|ZP_03257392.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
gi|208818296|ref|ZP_03258616.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
gi|209399852|ref|YP_002270209.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
gi|254792748|ref|YP_003077585.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli O157:H7 str. TW14359]
gi|261226550|ref|ZP_05940831.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli O157:H7 str. FRIK2000]
gi|261254841|ref|ZP_05947374.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli O157:H7 str. FRIK966]
gi|12515007|gb|AAG56134.1|AE005344_10 putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli O157:H7 str. EDL933]
gi|13361245|dbj|BAB35203.1| putative DNA methylase [Escherichia coli O157:H7 str. Sakai]
gi|208724386|gb|EDZ74094.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
gi|208732861|gb|EDZ81549.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
gi|208738419|gb|EDZ86101.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
gi|209161252|gb|ACI38685.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
gi|254592148|gb|ACT71509.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli O157:H7 str. TW14359]
gi|320189851|gb|EFW64504.1| putative DNA methylase [Escherichia coli O157:H7 str. EC1212]
gi|326344501|gb|EGD68252.1| putative DNA methylase [Escherichia coli O157:H7 str. 1044]
Length = 352
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + E Y
Sbjct: 12 LINADCLEFMRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---AGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R G+E++ + +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRATGVELETERFEQT 340
>gi|257081772|ref|ZP_05576133.1| LlaDCHIB [Enterococcus faecalis E1Sol]
gi|256989802|gb|EEU77104.1| LlaDCHIB [Enterococcus faecalis E1Sol]
Length = 214
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 32/242 (13%)
Query: 42 LIFADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
++ DPPY ++ G R S + + + F R L RV+K
Sbjct: 1 MVIIDPPYLMKQGKSGGAFGRDKRSYHNEIESMTN---------DFERKVLDELVRVMKK 51
Query: 99 NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
L+V S + L+ + W K+NP+P G+ + L +
Sbjct: 52 I-NLYVWCSKDQLQGYINYFSQKGC-TLDLLTWHKTNPVPTCNGKYLSDTEYLLFFKEKG 109
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
K G + + HPT KP ++ +++
Sbjct: 110 VKVFGSYSTKKKFYVTPTN------------------KKDKDLYQHPTVKPLNIIENLVI 151
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
+S++ +++LD F GSGT+ A R FIG E +++Y D+A +RI V + +
Sbjct: 152 NSSQENEVVLDCFIGSGTTAVAAINTNRQFIGFEKEKEYFDVAIERIEKVSEEDDSKNRS 211
Query: 279 LT 280
+
Sbjct: 212 MD 213
>gi|332994839|gb|AEF04894.1| type III restriction-modification system methyltransferase
[Alteromonas sp. SN2]
Length = 628
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 34/232 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP---DHSLVDAVTDSWD 73
++ I+G+++ L+ L +DLIF DPPYN + + S D
Sbjct: 98 ENLFIEGDNLDALKLLQESYLGKIDLIFIDPPYNTGSDFIYKDNFSVEKSKFLESDGQVD 157
Query: 74 KFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-N 120
++ ++ + + L + +L NG ++V + + +L
Sbjct: 158 DLNNRLMSNTNADGRFHSSWLSMMFSRLKLAKNLLSENGAIFVAIDDGEVANVRKLLDEI 217
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANED 177
L +S P H +I S S K + N D
Sbjct: 218 FGRDNLIANFVWQSKDTPGNDSTGVAQTHNHVIAFSKSNSFKPNLLERSDKQIANYKNPD 277
Query: 178 VQMRSDWLIPICSGSE-RLRNK------DGEKLHP-----TQKPEALLSRIL 217
R WL + SE R R+ DG +++P ++P+ ++ +++
Sbjct: 278 DDPRGVWLATPLTRSEFRERDFYPLVSPDGREVYPPDGTCWRRPKDVIEKLI 329
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
N+ + +E + DG+K T KP L+ R++ T ++LD F GS
Sbjct: 360 NQSWWPYEFAGSTRNANAEIKKLFDGKKPFDTPKPTQLIKRVIDMCTSKDSVVLDFFAGS 419
Query: 235 GTSGAVAKKLR------RSFIGIEMKQDYID 259
T+ + R+FI +++ +Y +
Sbjct: 420 STTAQSVMECNIRDEGKRTFIMVQI-PEYCN 449
>gi|326388796|ref|ZP_08210380.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
gi|326206706|gb|EGD57539.1| DNA methylase N-4/N-6 [Novosphingobium nitrogenifigens DSM 19370]
Length = 512
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 23/177 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L V I+ DPPYN S + D+ +
Sbjct: 39 NMLIQGDNLEALKSLLPYYRGQVKCIYIDPPYNT----------RSAFEHYDDNLE---- 84
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ A L+ R +L +G++WV + + ++ +
Sbjct: 85 HSQWLAMIWPRLVLLRELLAEDGSIWVSIDDNEGHYLKVIMDEVFGRRNFIASNVWQKRY 144
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWLIPI 188
+ HE L+ + SP+A + N A N + +D
Sbjct: 145 SRENREAIGDVHEYLMVYAKSPEAFKASRNRIPLDEQQAKIYKNPENPKETDPTKRW 201
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 186 IPICSGSERLRNKDGEK----------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+E + +K T KPE LL RIL +T PGD++LD F GSG
Sbjct: 276 WTWWPHTEVGHTDESKKECNALFGADVSFGTPKPERLLERILHIATNPGDLVLDSFLGSG 335
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
T+ AVA K+ RS+IGIEM + R+
Sbjct: 336 TTAAVAHKMGRSWIGIEMGDHAVSHCAPRLHK 367
>gi|255608747|ref|XP_002538950.1| conserved hypothetical protein [Ricinus communis]
gi|223509626|gb|EEF23433.1| conserved hypothetical protein [Ricinus communis]
Length = 298
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY--------RPDH 62
+ W++KI G+++ V+ L + VDLI+ DPP++ + + + +
Sbjct: 170 EDVDGWRNKIFWGDNLQVMSHLLKELRGKVDLIYIDPPFDSKADYKKSVSLKGRAAESNR 229
Query: 63 SLVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + TD W + + Y F LL R +L PNG++++ Y + ML
Sbjct: 230 ASFEEKQYTDIW----NNDEYLQFMFERLLLLRELLSPNGSIYLHCDYRKSHHLKLML 283
>gi|296454088|ref|YP_003661231.1| adenine specific DNA methylase Mod [Bifidobacterium longum subsp.
longum JDM301]
gi|296183519|gb|ADH00401.1| adenine specific DNA methylase Mod [Bifidobacterium longum subsp.
longum JDM301]
Length = 644
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 68/233 (29%), Gaps = 29/233 (12%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSL 64
+ E ++ I+G+++ L+ L V LI+ DPPYN +
Sbjct: 89 PVKERSKDWDTTRNLYIEGDNLDALKLLRENYAGKVKLIYIDPPYNTGHDFIYKDNFGKT 148
Query: 65 VDA-------VTDSWDK--------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
V A D + + + LL R +L +G + + H
Sbjct: 149 VAAAKSESGDYDDEGGQLVANPESNGRFHSDWCSMIYPRLLLARDLLTNDGVILISVDDH 208
Query: 110 NIFRIGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF- 166
+ + + +VW+ N HE ++ S SP + +
Sbjct: 209 EAVNLKKICDEIFGSESFCAQLVWKSRQNKDNRSVTGVSIDHEYVLMYSKSPDKRVFRGA 268
Query: 167 NYDALKAANEDVQMRSDWLIPICSG--------SERLRNKDGEKLHPTQKPEA 211
+ N D R W G + + + KPE
Sbjct: 269 DRLEDAYQNPDNDPRGPWQSANMVGLATEDARPNLHYDLINPKTGINYGKPEK 321
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 25/138 (18%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
+GS +R ++ KP L+ +++ T DI+LD F GS +S
Sbjct: 377 NGSLEIRKLFNGQMFDFPKPSQLIQQLIDQGTSNEDIVLDFFSGSASSAVATLNQNATGN 436
Query: 246 --RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
R FI I+ + + + E + + G+
Sbjct: 437 GHRRFIMIQ-------------------MPEAVGENSEAAKAGYSTICEIGEERIRRAGE 477
Query: 304 ILTNAQGNISATVCADGT 321
+ + +A + DGT
Sbjct: 478 KIKSEIEAENAQLTLDGT 495
>gi|224023936|ref|ZP_03642302.1| hypothetical protein BACCOPRO_00653 [Bacteroides coprophilus DSM
18228]
gi|224017158|gb|EEF75170.1| hypothetical protein BACCOPRO_00653 [Bacteroides coprophilus DSM
18228]
Length = 468
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 15/196 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+G+++ L L +D+I+ DPPYN +Y D+ D D +
Sbjct: 77 HILIEGDNLEALATLAYTHEGKIDVIYIDPPYNTGNKDFIY------NDSYVDKEDSYR- 129
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ +F L +++L G +++ + ++ + + +
Sbjct: 130 HSKWLSFMSRRLKIAKKLLSERGMIFMSIDDNEQAQLKLLCDEVFGQENFVASILWQKIH 189
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG----S 192
+ H+ ++ + + +D P SG +
Sbjct: 190 SIKNDAKYLSVNHDFILMYAKDINFININLLKRTETMNSRYKNPDNDPRGPWQSGDLVAN 249
Query: 193 ERLRNKDGEKLHPTQK 208
E N + + + PT K
Sbjct: 250 ETRTNGNYDVVGPTGK 265
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 177 DVQMRSDWLIPICSGS-ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
D SD + G+ E D + L KP L+SRIL S+ IILD F GSG
Sbjct: 317 DTWWTSDEVGHNQEGARELKSLLDDKLLFSYPKPSRLISRILQISSLEYSIILDFFAGSG 376
Query: 236 TSGAVAKKLR------RSFIGIEMKQDYI--DIATKR 264
T+ +L R I + ++ I ++ +R
Sbjct: 377 TTLHATMQLNAEDGGHRQCILVTNNENNICEEVTYER 413
>gi|226947209|ref|YP_002802282.1| adenine specific DNA methylase N-4/N-6 [Azotobacter vinelandii DJ]
gi|226722136|gb|ACO81307.1| adenine specific DNA methylase N-4/N-6 [Azotobacter vinelandii DJ]
Length = 560
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 65/207 (31%), Gaps = 20/207 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
+ S + + + +++I G+++ L+ L + V +F DPPYN
Sbjct: 29 EKSYHAKQRVSENDFFDNQLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTGSAFT---- 84
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+D + R L +R+L +G+LW+ + + +
Sbjct: 85 ----------HYDDGLEHSIWLGLMRDRLEIIKRLLSDDGSLWITIDDNECHYLKVLCDE 134
Query: 121 -LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + P R+F H+ ++ S +P + AN
Sbjct: 135 VFGRNNFVSNLIWEKADSPRNSARQFSTDHDHILIFSKNPDWIPKK--LQRTEQANSIYS 192
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPT 206
+ + NK K T
Sbjct: 193 NPDNDPRGPWLPGDPYANKPYSKGQYT 219
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G+ T KPE L+ R+L +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 300 PGDSSFDTPKPERLIERVLNIATSPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGEHCH 359
Query: 259 DIATKRIASVQPLGN 273
R+ V +
Sbjct: 360 THIIPRLKKVIDGED 374
>gi|317182725|dbj|BAJ60509.1| Type III DNA modification enzyme [Helicobacter pylori F57]
Length = 438
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 78/218 (35%), Gaps = 27/218 (12%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + +K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D ++ + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEVLKTLDYSKEKLDYITNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ ++ + RK+ N HE L+ + + + +
Sbjct: 194 DNEAAQLKLLCDEIFGEGNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNKE---FIN 250
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
K +D + + ++ + + +
Sbjct: 251 LLGGEKNLENYKNPDNDPNGAWINDNPSAKSGNIKTGY 288
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST- 221
Y + K + + + + + E L GE K + +I++ ST
Sbjct: 341 RYLKDLKTTKKTFDSLIFSDNCYMNQTATKELLSLGMGE-YFTYPKGVEFMKKIILHSTT 399
Query: 222 -KPGDIILDPFFGSGTSGAVAKKLR 245
DIILD F GSGT+ +
Sbjct: 400 PNSNDIILDFFAGSGTTAHAVLESN 424
>gi|291087315|ref|ZP_06346093.2| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
gi|291075350|gb|EFE12714.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
Length = 276
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/272 (19%), Positives = 92/272 (33%), Gaps = 74/272 (27%)
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------- 110
+ + ++ + Y + RRVL+P+GTLW+ S
Sbjct: 1 MDAQIGRETTPKEYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFVDPKNPSG 60
Query: 111 -----------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ + L++ +++ NDI+W K NPMP R
Sbjct: 61 RNGQAVALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRCAR 120
Query: 148 AHETLIWASPSPKAK----------------------------------GYTFNYDALKA 173
+E + S S K
Sbjct: 121 CYEHIFLFSKSKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPR 180
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ +++ + ++ + H P L+ L++ G I+LDPF G
Sbjct: 181 EHGEIKDADINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMG 240
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
SGT+G VA ++ R F+GIE+ +Y ++A KRI
Sbjct: 241 SGTTGMVASQMGRHFVGIELNPEYTELAYKRI 272
>gi|218960492|ref|YP_001740267.1| putative Modification methylase MjaI (N-4 cytosine-specific
methyltransferase MjaI) (M.MjaI) [Candidatus Cloacamonas
acidaminovorans]
gi|167729149|emb|CAO80060.1| putative Modification methylase MjaI (N-4 cytosine-specific
methyltransferase MjaI) (M.MjaI) [Candidatus Cloacamonas
acidaminovorans]
Length = 350
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 95/275 (34%), Gaps = 34/275 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI NS+ ++ L + L+ PPY + + + + +
Sbjct: 86 KIYIKNSMK-MDDLEDNRIHLMITSPPYF--------DTKMYSGEPLPGDLGNIHNIDEW 136
Query: 82 DAFTRAWLLACRRVLKPNGTLWVI----------GSYHNIF----------RIGTMLQNL 121
RVL+P ++ G + + +IG + +
Sbjct: 137 FEKIGEVWKEVYRVLQPGRKAFINIMNLPVRLEKGKFRTLNLAGRTIDLCEKIGFIFKRD 196
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
W + V P G N HE ++ K + + + + +
Sbjct: 197 IIWQKTNAVRAHFGTYPYPGGILINNMHEFILEFDKPEKKGFNKYGHLTKEQKEQSKLDK 256
Query: 182 SDWLIPICSGSERLRNKD--GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
WL S ++ + + H P L R++ + + G+ ILDPF GSG + +
Sbjct: 257 DFWLSIKKSDVWVMKPQGSGDNRNHIAPFPYELPFRLIKAFSYVGETILDPFVGSGVTLS 316
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
A L+R+ IG E+ Y +IA + + +++
Sbjct: 317 AAADLKRNGIGYEI---YPEIAYEAVKALRYHQTE 348
>gi|15602563|ref|NP_245635.1| hypothetical protein PM0698 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12720985|gb|AAK02782.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 636
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 60/176 (34%), Gaps = 19/176 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------QLYRPDHSLV 65
+ I+G+++ L+ L V +I+ DPPYN + L R +
Sbjct: 100 NLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYNDDFAETVDDFLARSNQVDE 159
Query: 66 DA---VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ VT++ + + + L R +L +G +++ + + +
Sbjct: 160 EGNRLVTNTESNGRYHSDWLSMMYSRLKLARNLLTDDGVIFISIDDNEQANLKRICDEIF 219
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ ++ + K L+ +D
Sbjct: 220 GEKNFISTIPRQTSAQRPSQEKYVSITHDYILVYAKVKKHNFQHVIKRDLRDLKQD 275
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 18/116 (15%)
Query: 195 LRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKL------RRS 247
L + K+ KP AL+ ++ +S+ + DIILD F GS T+ + R
Sbjct: 391 LNELNLNKVFDFSKPVALIELLVNLSALQENDIILDFFAGSSTTAHAVMQFNAENGGNRR 450
Query: 248 FIGIEMKQD-----------YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
FI +++ + Y IA ++ GN L GK ++
Sbjct: 451 FIMVQLPEKTEEKSEAYKSGYQTIAEISKERIRRAGNKILADNAGKEGIKQLDIGF 506
>gi|302343032|ref|YP_003807561.1| DNA methylase N-4/N-6 domain protein [Desulfarculus baarsii DSM
2075]
gi|301639645|gb|ADK84967.1| DNA methylase N-4/N-6 domain protein [Desulfarculus baarsii DSM
2075]
Length = 938
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 24/172 (13%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
+W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 130 KWSNRLILGDSLQVMASLAEREGLRGQVQCIYLDPPYGIKFNSNFQWSTTSRTVTDGKAE 189
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
V A D+W +Y + R L A R +L +G+++V N+ R+
Sbjct: 190 HITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTAARDLLAESGSIFVQIGDQNVHRVRA 247
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
++ + F N I + N + W + S + + +
Sbjct: 248 LMDEV-FGDENFIGEIAYHTTSGSTSEYISNPKNYVHWYAKSRREMTFRRCF 298
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K++ Q ++ R ++ +T PGD++LDP GSGT+ VA++ R +I I+ + + +A
Sbjct: 432 KVYVVQTNIKVIQRCILMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 491
Query: 262 TKRI 265
RI
Sbjct: 492 RARI 495
>gi|326387306|ref|ZP_08208916.1| adenine specific DNA methylase [Novosphingobium nitrogenifigens DSM
19370]
gi|326208487|gb|EGD59294.1| adenine specific DNA methylase [Novosphingobium nitrogenifigens DSM
19370]
Length = 562
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 19/174 (10%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + +IKG+++ L+ L A V IF DPPYN +D
Sbjct: 44 FDNMLIKGDNLLALKALEQDYAGKVKCIFIDPPYNTGSAFT--------------HYDDG 89
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKS 134
+ + R L R +L +G+LW+ + + + + +S
Sbjct: 90 VEHSIWLSLMRDRLEIIRNLLSDDGSLWITIDDNESHYLKILCDEIFGRENFVSNIVWQS 149
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
P H ++ S + Y + AN +D
Sbjct: 150 KDTPGNNASTIAQTHNMVLVFKKSAIWRPYLIPRSEKQVANY-KNPDNDPRGAW 202
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+GEK T KPE ++ R L +T+PGDI+LD F GSGT+GAVA K+ R +I +E+
Sbjct: 302 EGEKSFDTPKPEKIVQRALEVATRPGDIVLDSFAGSGTTGAVAHKMGRRWIMVEIGDHAT 361
Query: 259 DIATKRI 265
R+
Sbjct: 362 THIMPRL 368
>gi|302338349|ref|YP_003803555.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
11293]
gi|301635534|gb|ADK80961.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
11293]
Length = 352
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/301 (19%), Positives = 101/301 (33%), Gaps = 34/301 (11%)
Query: 32 LEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
+ + A+++ L+ PPY + + L+ + + ++ + + +FEA +
Sbjct: 15 MRTIEAETIALVVTSPPYPMISMWDLLFALQNPDIKVALENGNGYKAFEAMHSILDEVWR 74
Query: 91 ACRRVLKPNGTLWVIGS------------YHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
C RVL P G L + + N RI + + L F L ++WRK P
Sbjct: 75 ECSRVLMPGGFLCINIGDATRKIGAHFRLFTNHARIISSCEALGFHSLPPLLWRKQTNSP 134
Query: 139 N--------FRGRRFQNAHETLIWASPSPKAK----GYTFNYDALKAANEDVQMRSDWLI 186
G HE ++ + G + E SD
Sbjct: 135 TKFMGSGMLPAGAYVTLEHEYILVFRKGGNRRFSEDGRIIRKRSALFWEERNSWFSDLWD 194
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
G + ++ G + P L R++ + D +LDPF G+GT A A R
Sbjct: 195 --FKGIRQPLSQKGCRSRSAAFPFELAFRLINMFSIQNDTVLDPFLGTGTVTAAAIASAR 252
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
+ +G+E+ + I KR + F VE +Q
Sbjct: 253 NSVGVEIDSGLCGL----IKETITAATEAGNKRQSKRLSDHLHF---VEDKELQHRNSFY 305
Query: 307 N 307
Sbjct: 306 C 306
>gi|167754382|ref|ZP_02426509.1| hypothetical protein ALIPUT_02676 [Alistipes putredinis DSM 17216]
gi|167659007|gb|EDS03137.1| hypothetical protein ALIPUT_02676 [Alistipes putredinis DSM 17216]
Length = 262
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 81/237 (34%), Gaps = 23/237 (9%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LI AD PYNL +G + +L DK + F
Sbjct: 21 KAQLIIADVPYNLGANAYASNPAWYVDGDNKNGESALAGKQFFDTDKDFRPAEFMHFCSQ 80
Query: 88 WLLA---CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
L + G G+ I Q + L K FR
Sbjct: 81 MLRKDKPIKEEKSEGGGRSKGGAACMIL-FCPFEQMHYYIELGQRYGLKRYIPLVFRKDF 139
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ + + + + K N+ + + + +R+ D K+H
Sbjct: 140 SAQVLKANMKVVGNCEYGLILYRDRLPKFNNDGRMIFNCFDW--------VRDTDTPKIH 191
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
PTQKP LL R++ T GD+++DP GSGT+ A + R G E+K+D+ A
Sbjct: 192 PTQKPVPLLERLIEIFTDKGDVVIDPCAGSGTTLLAAANMGRKAYGFEIKKDFCAEA 248
>gi|238544539|dbj|BAH60891.1| putative DNA-methyltransferase [Desulfotignum balticum]
Length = 752
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 78/194 (40%), Gaps = 25/194 (12%)
Query: 19 WKDKIIKGNSISVLEKLPAKS----------VDLIFADPPYNLQLNGQL----------Y 58
W +K+I G++ +L L S + LI+ DPP+++ + +
Sbjct: 87 WNNKLIWGDNKLILSSLKNGSLREEIEAQGGIKLIYIDPPFDVGADFSMDIEIGGETLTK 146
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+P A D+W K + ++ + L+ R +L +G+++V Y + +L
Sbjct: 147 KPSVLEEIAYRDTWGKGAD--SFISMIYERLVLMRDLLAEDGSIYVHCDYRVSAYMKLVL 204
Query: 119 QN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + + + R+F ++ +++ + + + Y F + +++D
Sbjct: 205 DEVFGASCFINEIVWRRRTGILNQSRKFGSSTDSIYFYAK--NSDKYLFKQQYIPYSDDD 262
Query: 178 VQMRSDWLIPICSG 191
+++ ++ G
Sbjct: 263 NYVKTKFVYKDSDG 276
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 9/182 (4%)
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE--DVQMRSDWLIPIC 189
K P + + A + +E ++ W
Sbjct: 297 YKGYKPPANGWSFKLDTMKEWDKAGKLYFPDNKNQRIQRKQYLDESEGKPAQNLWDDIRP 356
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
S+ L + +PTQKPE + R++ +S+K GD+I D F GSGT+ AVA+KL R +I
Sbjct: 357 INSQAL----EDTKYPTQKPEQFIERMVKTSSKKGDLIADFFCGSGTTAAVAEKLNRKWI 412
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
++ + I KR+ VQ E R + + I L +
Sbjct: 413 CSDLGKFAIHTTRKRMIGVQRGLKAE---NKSWRAFEILNLGKYERQHYIGINPDLREEE 469
Query: 310 GN 311
Sbjct: 470 KQ 471
>gi|114567068|ref|YP_754222.1| adenine-specific DNA-methyltransferase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114338003|gb|ABI68851.1| site-specific DNA-methyltransferase (adenine-specific)
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 611
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 54/169 (31%), Gaps = 16/169 (9%)
Query: 8 AINENQNSIFEW---KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD 61
+ ++ S +W K+ I+G+++ VL L V +I+ DPPYN +
Sbjct: 73 TLRPDKESSKDWDTTKNLYIEGDNLEVLRLLQKAYHRKVKMIYIDPPYNTGNDFIYKDDY 132
Query: 62 HSLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
V + + ++ + L + +L +G +++ +
Sbjct: 133 KDNVKSYKEKTEQSMKANPATAGRYHSEWLNMMYPRLRLAKNLLSDDGAIFISIDDTELD 192
Query: 113 RIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + + N + F + + ++ S
Sbjct: 193 NLKKICNEVFGEENFIACIAWHKNYASANDSKGFSSVLDYILVYRKSEN 241
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 16/130 (12%)
Query: 140 FRGRRFQNAHETLIWASPS---PKAKGYTFNYDALKAANE---DVQMRSDWLIPICSGS- 192
+GR + T+ + + NE V + W C +
Sbjct: 298 PKGRCWVTNKNTIDKWIKEGRVFFGQTGNGAPQLKRYLNEVQQGVVPITYWSYDECGHND 357
Query: 193 ---ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------ 243
+ ++ E T KP L+ +IL ST I+LD F GS T+ K
Sbjct: 358 EARKEIKQLFSEPPFDTPKPTRLIKQILNISTNKDSIVLDFFSGSSTTAHAVMKLNSQDD 417
Query: 244 LRRSFIGIEM 253
R F+ +++
Sbjct: 418 GNRKFVMVQL 427
>gi|332086446|gb|EGI91593.1| hypothetical protein SD15574_3806 [Shigella dysenteriae 155-74]
Length = 197
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 18/149 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+K+PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + +E ++ K YTFN DA
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDA 146
>gi|281420846|ref|ZP_06251845.1| type III restriction system methylase [Prevotella copri DSM 18205]
gi|281405138|gb|EFB35818.1| type III restriction system methylase [Prevotella copri DSM 18205]
Length = 667
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 19/175 (10%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG-------QLYR 59
E+ ++ I+G+++ VL+ L V +I+ DPPYN + +
Sbjct: 89 REDSVDFDNTQNLYIEGDNLDVLKCLKETYLHKVKMIYIDPPYNTGKDFIYGDNYAEEAD 148
Query: 60 PDHSLVDAVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
S + D ++ ++ + L + LK +G +++ H +
Sbjct: 149 NYLSNSEQYDDQGNRLATNMETNGRFHTDWLNMIYPRLKVAKDFLKEDGVIFISIDDHEV 208
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + + F N + R+ HE ++ + A+ Y +
Sbjct: 209 TNLHKVCDEI-FGAANFTGCIVLQTATDNNPRQINTEHEYILCYCKNKDAQEYWY 262
>gi|312171443|emb|CBX79701.1| DNA methylase N-4/N-6 domain-containing protein [Erwinia amylovora
ATCC BAA-2158]
Length = 506
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 18/193 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ I++G+++ L L A V IF DPPYN Q S + D +
Sbjct: 37 NMIVQGDNLLALRALMPLYAGQVKCIFIDPPYNTQ----------SAFEHYDDKLE---- 82
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ + L+ R +L +G++WV + + M+ +
Sbjct: 83 HSQWLSMMYPRLVLLRDLLAEDGSIWVTLDDNEAHYMKVMMDEVFGRENFIANSLWQKVF 142
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ H+ ++ K + +D S + R
Sbjct: 143 ATKNSAKHLSVDHDHILIYGKQANGWVPNLMPRTAKQDSIYKNPDNDPRGIWTSDNLTAR 202
Query: 197 NKDGEKLHPTQKP 209
N ++P P
Sbjct: 203 NSYSLGIYPVTNP 215
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+ T KPE L+ RIL ++ PGD+ILD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 297 VFSTPKPERLIQRILHIASNPGDLILDSFLGSGTTAAVAHKMNRRYIGIEMGEHARTHCI 356
Query: 263 KRIAS 267
R+
Sbjct: 357 PRLQK 361
>gi|332975330|gb|EGK12227.1| type III restriction-modification system EcoP15I [Kingella kingae
ATCC 23330]
Length = 658
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 30/182 (16%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
N L N N ++ +IKG+++ VL+ L + +I+ DPPYN + +Y+
Sbjct: 116 HNRLPENANS------ENILIKGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDDFVYQD 169
Query: 61 DHS-------LVDAVTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
+ + + K +S A+ F L R +L+ +G +++
Sbjct: 170 NRKFTPEQLAELGGMDLDEAKRVLEFTAKKSNSHSAWLTFMYPRLYIARELLRDDGVIFI 229
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNA----HETLIWASPSP 159
+ + ++ + + VW S+ + + + HE +I
Sbjct: 230 SIDGNEVSQLKILCDEIFGESNVEQYVWNLSDFEESSFTKTASHTVRFEHEYIIACYKKN 289
Query: 160 KA 161
K+
Sbjct: 290 KS 291
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 24/136 (17%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIE 252
D ++ KP L+ R+ + +P D+ILD F GSGT+ + R FI ++
Sbjct: 412 DDMEVFSFPKPIELIHRLASITIQPKDLILDFFAGSGTTAHAVMQLNTEDNGNRRFICVQ 471
Query: 253 M--------------KQDYIDIATKRIASVQPLGNIELTVLTG----KRTEPRVAFNLLV 294
+ Q DI RI E TG K + F +
Sbjct: 472 LPEKTDEKSEAHKAGYQTIFDITKARIEKAAAKIQTENPDYTGDLGFKIFQTEPNFQTAL 531
Query: 295 ERGLIQPGQILTNAQG 310
+ + +++
Sbjct: 532 DVDFDPAQTEIPDSKN 547
>gi|57237552|ref|YP_178566.1| site-specific DNA-methyltransferase, putative [Campylobacter jejuni
RM1221]
gi|57166356|gb|AAW35135.1| site-specific DNA-methyltransferase, putative [Campylobacter jejuni
RM1221]
Length = 250
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 28/238 (11%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LI AD PYNL N G + + D + F
Sbjct: 20 KAQLIIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + + V S+ + + + F ++V+RK + +
Sbjct: 80 MLIKEPKECGKSPCMIVFCSFEQQAMLIEVAKKYGFNHCINLVFRKQSSSQVLKANM--- 136
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ + + K N+ + + +++ K+HPTQ
Sbjct: 137 ------KIVGNCEYALILYREKLPKFNNDGKMIYNCMDWQ--------KDEGIPKVHPTQ 182
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KP LL R++ T GD+++DP GSG++ A L R G E+K+D+ A + +
Sbjct: 183 KPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAACNLNRKAYGFEIKKDFFKSANEIM 240
>gi|320640054|gb|EFX09635.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101]
Length = 147
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + +E ++ K YTFN DA
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDAH 147
>gi|261366068|ref|ZP_05978951.1| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
gi|288565327|gb|EFC86887.1| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
Length = 185
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 20/185 (10%)
Query: 27 NSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS-------LVDAVTDSW---- 72
+++ VL+ L SV +I+ DPPYN +G +Y+ D + + +
Sbjct: 1 DNLEVLKHLKNAYANSVKMIYIDPPYNTGSDGFVYQDDRKFTPEELARLANIDEDEAARI 60
Query: 73 ----DKF-SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWIL 126
DK +S A+ F L R +LK +G +++ + ++ +
Sbjct: 61 LDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEVFGEGNF 120
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+ + + P + F H+ LI + + + +D
Sbjct: 121 VEQIIWEKKFSPQNDAKYFSENHDYLICYAKNITELEIKLLPRTEGTNARYKNIDNDPRG 180
Query: 187 PICSG 191
SG
Sbjct: 181 AWTSG 185
>gi|157155781|ref|YP_001464330.1| DNA methylase [Escherichia coli E24377A]
gi|218696572|ref|YP_002404239.1| DNA methylase N-4/N-6 [Escherichia coli 55989]
gi|256025062|ref|ZP_05438927.1| DNA methylase N-4/N-6 [Escherichia sp. 4_1_40B]
gi|157077811|gb|ABV17519.1| DNA methylase [Escherichia coli E24377A]
gi|218353304|emb|CAU99280.1| DNA methylase N-4/N-6 [Escherichia coli 55989]
Length = 542
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 18/157 (11%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS 63
L E + ++ +I G+++ L+ L A V IF DPPYN
Sbjct: 26 LEDKELSYGDADSENLLIHGDNLLALKALEQKYAGKVKCIFIDPPYNTGSAFT------- 78
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLN 122
+D + R L R +L +G++W+ H + + +
Sbjct: 79 -------HYDDGLEHSLWLCLIRDRLELLRTLLSEDGSIWITIDDHEVHYLKCLCDEIFG 131
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
V + + P F + H+ ++ +
Sbjct: 132 RNNFISNVIWEKSDSPRMDAAFFSSRHDHILVYAKDQ 168
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 7/153 (4%)
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+I ++ + Q + S G+T + ++ + W
Sbjct: 227 TEIFPKRQDGTDGRWRWGVQKIDQEKWRIDWSKGRNGWTPYFRVYADSSSGRPPETIWFH 286
Query: 187 PICSGSERLRNKDGEKLHPT------QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
GS R + +K+ PT KPEAL+ +IL +T GD++LD F GSGT+GAV
Sbjct: 287 SEV-GSNRTSKAEIKKVIPTISAFDTPKPEALIKKILEIATDNGDLVLDSFAGSGTTGAV 345
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
A+K+ R +I +E+ R+ V +
Sbjct: 346 AQKMGRQWIMVELGDHCRTHIVPRMKKVIDGKD 378
>gi|260438180|ref|ZP_05791996.1| hemagglutinin associated protein [Butyrivibrio crossotus DSM 2876]
gi|292809370|gb|EFF68575.1| hemagglutinin associated protein [Butyrivibrio crossotus DSM 2876]
Length = 306
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 91/253 (35%), Gaps = 29/253 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+GN L L S+D I D P L F Y
Sbjct: 65 LLIEGNGRD-LSMLKDNSIDCILTDHP-WLDRKSNK---------------GGTRDFAEY 107
Query: 82 DAF--TRAWLLACRRVLKPNGTLWVI------GSYHNIFRIGTMLQNLNFWILNDIVWRK 133
D F T RVLK L + +Y +++I + F + + W+K
Sbjct: 108 DCFRYTLNDFKEKARVLKEGCFLVEVLPAENENNYEYLYQIKNYAKEAGFLYYSKVTWKK 167
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N + N + + +++ S + S+ ++P +
Sbjct: 168 GNFVSNTGRK--AKNTQDIMFFSKGKARSMRIDKKKSDSTGQIHYMSGSNGMLPAMFDIQ 225
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ K+ K+H ++ P L IL T G+I+LD F GSG G A +R+ I IE+
Sbjct: 226 PVSKKN--KIHQSELPVELCEEILEYVTYQGEIVLDSFAGSGAVGVAALNKKRNCILIEI 283
Query: 254 KQDYIDIATKRIA 266
++ I+ R
Sbjct: 284 LKENIEKIKNRFK 296
>gi|125973039|ref|YP_001036949.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
gi|125713264|gb|ABN51756.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
Length = 610
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 65/203 (32%), Gaps = 23/203 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ L + +I+ DPPYN + H ++
Sbjct: 81 EESKNWDTTQNLYIEGDNLEVLKLLQKSYYGKIKMIYIDPPYNTGKDFVYRDDFHDSLEN 140
Query: 68 VTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + L R +L +G +++ + +
Sbjct: 141 YKRITGQVDGNGKAISTNTETSGRYHTDWLNMMYPRLRLARNLLSDDGVIFISIDDNEVD 200
Query: 113 RIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA--KGYTFNY 168
+ + + + + V ++ + N + HE ++ + T +
Sbjct: 201 NLKKICNEIFGEDNFIANCVRKRRDSQANLS-QNISPIHEYVLIYAKRFGNILNKVTPSL 259
Query: 169 DALKAANEDVQMRSDWLIPICSG 191
D N D R + C+
Sbjct: 260 DMGSYKNPDNDPRGPYTTMPCTN 282
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------L 244
G+ ++ G L KP LL +L + IILD F GS T+ +
Sbjct: 357 GTREIKELFGGLLFNNPKPTGLLKFLLELGSSKDSIILDFFSGSATTAHAVMQLNAEDGG 416
Query: 245 RRSFIGIEM------KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
R FI +++ + I+ + G + K E +
Sbjct: 417 NRRFIMVQLPEPTDENSEAYKAGYMNISEI---GKERIRRAGEKIKEEYKDKGNIEN 470
>gi|161506656|ref|YP_001576604.1| DNA methylase [Lactobacillus helveticus DPC 4571]
gi|160347645|gb|ABX26319.1| DNA methylase [Lactobacillus helveticus DPC 4571]
Length = 608
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + + K+ I+G+++ VL+ L V +I+ DPPYN + +
Sbjct: 84 EKSENWNKTKNVYIEGDNLEVLKLLQKSYSDKVQMIYIDPPYNTGNDFIYKDDFSDSYKS 143
Query: 68 VTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ ++ S A+ L RR+LK +G +++ H
Sbjct: 144 YLEQTNQIDSNGNATTTQKEARGRIHTAWLNMMYPRLKLARRLLKESGVIFISIDDHEQA 203
Query: 113 RIGTMLQ 119
+ ++
Sbjct: 204 NLVKIMN 210
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 65/187 (34%), Gaps = 13/187 (6%)
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ R + +N I + Y + + +
Sbjct: 294 RKTMNFEFHGYKPSDTQRWQAGKEKIQELWDRNQ----IEFKNGTPFRRYFKDEENEISQ 349
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
M SG +RL + G K T KP L+ R++ ++TK D+I+D F G
Sbjct: 350 PFYNFMLPSVTGTAESGKKRLNDLLGNKHGFDTVKPVPLIQRLIAATTKDNDLIMDFFAG 409
Query: 234 SGTSGAVAKK------LRRSFIGIEMK--QDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
S T+ + R +I +++ Q+ ++ + + + ++ +++E
Sbjct: 410 SSTTAEAVLQQNLKDNFNRKYILVQLNDKQESVNSSFSSVTELGEERIKKVNEELKEKSE 469
Query: 286 PRVAFNL 292
++ +
Sbjct: 470 QQLDYGF 476
>gi|109897009|ref|YP_660264.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
gi|109699290|gb|ABG39210.1| DNA methylase N-4/N-6 [Pseudoalteromonas atlantica T6c]
Length = 230
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 37/247 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ + +++ L P +SV+LI DP Y + G R +S DA +++W
Sbjct: 6 TVHRQDAVDWLHMQPNQSVNLIVTDPAYQSLEKHRAKGTTTRLKNS--DASSNAWFAIFP 63
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + F + RVL N ++V+ I + + + F I W K
Sbjct: 64 NDRFFDF----FIEAYRVLDDNSHMYVMCDQETGLLIKPIAEQVGFKFWKFITWDKCAMG 119
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ Y + + + + ++ + +R+RN
Sbjct: 120 MGY----------------------HYRNQTEWVMFLEKGKRKLNNLGMCDVLRHKRVRN 157
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+PT+KP L + ++ ST + + D FFGSG A L R IG ++
Sbjct: 158 -----GYPTEKPMQLYADLIEQSTNIDETVADVFFGSGAGLLAAHNLGRKAIGTDISDAA 212
Query: 258 IDIATKR 264
+R
Sbjct: 213 HAYLQQR 219
>gi|184155519|ref|YP_001843859.1| methyltransferase [Lactobacillus fermentum IFO 3956]
gi|183226863|dbj|BAG27379.1| methyltransferase [Lactobacillus fermentum IFO 3956]
gi|299783293|gb|ADJ41291.1| Methyltransferase [Lactobacillus fermentum CECT 5716]
Length = 573
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 20/221 (9%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+NQ + K+ G+++ VL L +D+I+ DPPYN + PD
Sbjct: 9 DEKQNQGEGKDSKNLFFTGDNLEVLRHLQTSYQNKIDVIYIDPPYNTGQD-DFAYPDSFE 67
Query: 65 VD--------AVTDS-------WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ D SS A+ F L + +LK G +++ +
Sbjct: 68 YSDAQLEDMFGLDDDQLARLKSIQGKSSHSAWLTFMYPRLQLAKHLLKQTGVIFIAIDDN 127
Query: 110 NIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
+ + V + P + F +H+ ++
Sbjct: 128 EDGNLKEICDEIFGESNFLAQVVWERAYAPINLKKNFSPSHDYMLVYGRDANVIETNGIT 187
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ + +D + + ++P P
Sbjct: 188 RTADTDSSYGNLDNDPRGDWRPDNLSVGPAIPANIYPVTTP 228
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 33/194 (17%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL----RNKDGEKLHPT 206
IW + A + + M + E + G+K
Sbjct: 255 NRIWFGKNGDAVPSMKRFKSELRKTGVTPMTVWHYKDVGHSQEATQQLQKLMGGKKYFSY 314
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDI 260
KP L+ R + + I++D F GS T+ + R FI +++ + +
Sbjct: 315 PKPVKLVERAIQLYSDRDSIVMDFFAGSATTAEAVMRQNIEDQGHRRFIMVQLPEKTYHL 374
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQPGQILTNAQGNISATVCA 318
K E E GL+ +I + +
Sbjct: 375 --------------------NKNGEKVPNKGGRTAFEDGLMSVDEISRERIRRAAKKIKE 414
Query: 319 DGTLIS-GTELGSI 331
D L GS
Sbjct: 415 DNELTLPKDFDGSF 428
>gi|138894944|ref|YP_001125397.1| Type III restriction-modification systemmethyltransferase
[Geobacillus thermodenitrificans NG80-2]
gi|134266457|gb|ABO66652.1| Type III restriction-modification systemmethyltransferase
[Geobacillus thermodenitrificans NG80-2]
Length = 474
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 58/194 (29%), Gaps = 5/194 (2%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFS 76
+ I+G+++ L+ L SV +I+ DPPYN A + ++
Sbjct: 87 NWYIEGDNLEALKLLRASHEGSVQMIYIDPPYNTGKAFTYKDNWRKRKRAASHVEQEEAR 146
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSN 135
+ L + +L G +++ + M +
Sbjct: 147 VHAGWLNMMYPRLWMAKALLAETGAIFISIDDTEQANLKKMCDEIFGEHNFVATFIWQRA 206
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P + H+ ++ + + + +A +D P SG +
Sbjct: 207 FSPVNMNKFASRNHDFILCYAKNIDRLAWYGLPRDSEANGRYANPDNDPRGPWMSGDLSV 266
Query: 196 RNKDGEKLHPTQKP 209
EK++ P
Sbjct: 267 GPPIPEKIYDIVTP 280
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 178 VQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + + L+ DG + KP L+ R++ +TK D+ILD F GS T
Sbjct: 336 TIWTHDEVSHSQEAKKELKELFDGVAVMDYPKPVKLIQRMVALTTKDDDVILDFFSGSAT 395
Query: 237 SGAVAKKLR------RSFIGIEMKQDYIDIA 261
+ + RSFI +++ + + +
Sbjct: 396 TAHAVMQQNAEDGGQRSFIMVQLPERMVKTS 426
>gi|294339785|emb|CAZ88147.1| putative N6 adenine-specific DNA methyltransferase [Thiomonas sp.
3As]
Length = 923
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 24/186 (12%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL----------YRPDHS 63
W++++I G+S+ V+ L V +++ DPPY ++ + D
Sbjct: 173 WQNRMILGDSLQVMNSLLEFEGLGGQVQMVYMDPPYGVKFGSNFQPFVRKRDVTHGGDSD 232
Query: 64 L------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ V A D+W+ +Y + R L + +L +G+++V S NI + +
Sbjct: 233 MTREPEMVKAYRDTWELG--LHSYLTYLRDRLTLAKELLHESGSVFVQISEENIHHVREL 290
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
L + F N + + L+W + Y N+ + E
Sbjct: 291 LDEV-FGHQNLAGQITFKKTGGQSSSLIPSIGDYLLWYAKDKGKLKYRQNFYRKEPGEEG 349
Query: 178 VQMRSD 183
+ +
Sbjct: 350 AKQYNW 355
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+KL+ Q ++ R ++ T PGD++LDP GSGT+ VA++ R +I + + + +
Sbjct: 467 DKLYVVQTLPLVIQRCMLMCTDPGDLVLDPTCGSGTTAYVAEQWGRRWITCDTSRVPLAL 526
Query: 261 ATKRI 265
A +R+
Sbjct: 527 ARQRL 531
>gi|237743768|ref|ZP_04574249.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229432799|gb|EEO43011.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 261
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 87/236 (36%), Gaps = 30/236 (12%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LI AD PYNL N G + S + D + F +
Sbjct: 27 KAQLIIADIPYNLGNNAYASSPEWYINGDNKNGESSKANKAFFDTDHNFKIAEFMHFCQK 86
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L + + + ++ I + + F ++ P
Sbjct: 87 MLKKEPKEKGKAPCMIIFCAFQQINTLIEYAKKYGFEN-YIPIFFIKQSSPQVLKANM-- 143
Query: 148 AHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A Y F D L N + +M +W E+++ K+HP
Sbjct: 144 ---------KIVGATEYALIFYRDKLPKFNNNGKMIKNWFNWEKDNKEKVK-----KIHP 189
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
TQKP A+L R++ T GD+++DP GSGT+ AK+L+R+ G E+K+D +A
Sbjct: 190 TQKPIAILKRLIEIFTDAGDVVIDPCAGSGTTLRAAKELKRNSYGFEIKKDMYSLA 245
>gi|54296174|ref|YP_122543.1| hypothetical protein lpp0197 [Legionella pneumophila str. Paris]
gi|53749959|emb|CAH11344.1| hypothetical protein lpp0197 [Legionella pneumophila str. Paris]
Length = 646
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 73/208 (35%), Gaps = 19/208 (9%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ----- 56
++ +E + W +++I G + V+ L + + LI+ DPP+ +
Sbjct: 32 ETINNSEIDHHKSNWDNRLIWGENFLVMSSLLKEFAGKIQLIYIDPPFATGQDFSYTVNI 91
Query: 57 ------LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ P V A D+W K + E+Y L + +L NG L+V +
Sbjct: 92 GEHTEAMKIPSALEVKAYRDTWGKGT--ESYLQMMYDRLSIMKDLLAENGCLYVHCDWRV 149
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + +L + + + ++ +F +++++ +
Sbjct: 150 NYLLRFILNEIFGEENFINEIIWRRKQAQSWSANQFGVTNDSILLYTKGKDYIFNPSFSK 209
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRN 197
+ N + + G + +++
Sbjct: 210 DDE--NTKKYILERFKFDDGDGRKYMKS 235
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%)
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
N + ED +PTQKP ALL RI+ +S+
Sbjct: 278 MPEDKNARIYRKIYEDTYQGQMIQNIWLDIPIVNPMAKERVNYPTQKPIALLERIITTSS 337
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
GD+I D F GSGT+G A+KL R +I +++ + I + KR+
Sbjct: 338 NTGDLIADFFCGSGTAGLAAEKLGRRWIMVDLGRFAIHTSRKRL 381
>gi|304389846|ref|ZP_07371805.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304327022|gb|EFL94261.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 368
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/328 (17%), Positives = 113/328 (34%), Gaps = 68/328 (20%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY------NLQLN--------------------GQ 56
+I+G++ VLEK P SV LI DPPY N+ + +
Sbjct: 35 VIQGDAAEVLEKFPDDSVSLILTDPPYHSTKKANIANDRAFREDEDFLAWMETFAVQWKR 94
Query: 57 LYRPDHSLVDAVTD--------------------SWDKFSSFEAYDAFTRAWLLACRRVL 96
+ RP ++ + +W K + YD + R
Sbjct: 95 ILRPSGTVYVFCSSAMSARLEIMFSKYFRPIGHITWSKPNDP-GYDGWKGKMKKEALRSW 153
Query: 97 KPNGTLWVI------GSYHNIFR-------------IGTMLQNLNFWILNDIVWRKSNPM 137
P+ ++ GS+ R G ++ L + +
Sbjct: 154 YPHSERILMFEHGQYGSWEAYRRSPLGQFLQDKRKQAGLTMKALTEEVGAYGKVNHGGAV 213
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
N+ R +H+ + A G + + + +D +R
Sbjct: 214 ANWEAGRNIPSHDQYEKICAAIIATGKVAEMPKYEDVVRPMFLSNDVNFIDVWDFPSVRP 273
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G+ HP +KP ALL ++ +S+ D++LD F GSG++ A L R I +E+++ +
Sbjct: 274 FRGK--HPAEKPSALLEHMIKASSYEDDVVLDCFAGSGSTAVAAVGLGRKAIVVELEEKW 331
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTE 285
++ K + + + + + +E
Sbjct: 332 VERTIKDLEFIAQEEPSFKSSVASRESE 359
>gi|166712002|ref|ZP_02243209.1| type III restriction-modification system methyltransferase
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 631
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 19/157 (12%)
Query: 20 KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG---------------QLYRPD 61
K+ I+G+++ L+ L V +I+ DPPYN + + D
Sbjct: 98 KNLFIEGDNLDALKLLQENYLGKVKMIYIDPPYNTGSDFIYEDDFAEDAASYFENSKQID 157
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-N 120
+ V ++ + + A L + +L+ +GT+++ + +
Sbjct: 158 QAGNRLVANTESNGRFHSDWLSMMFARLRLAKNLLRDDGTIFISIDDFEASNLRALCDEI 217
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
K HE ++
Sbjct: 218 FGSQNYYCTFVWKRRSGAMDSVDNTSVDHEYVLCYGK 254
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGS 234
ED S G+ L++ G KL P K L+S + + GDI+LD F GS
Sbjct: 366 EDKISNSLVAPANTQGTRELQDIFGAKLFPHPKSTQLVSSLASQCRLEEGDIVLDFFAGS 425
Query: 235 GTSGAVAKKLRRS 247
T+ + +
Sbjct: 426 ATTAHAVLAMNAN 438
>gi|171060836|ref|YP_001793185.1| DNA methylase N-4/N-6 domain-containing protein [Leptothrix
cholodnii SP-6]
gi|170778281|gb|ACB36420.1| DNA methylase N-4/N-6 domain protein [Leptothrix cholodnii SP-6]
Length = 553
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 20/197 (10%)
Query: 19 WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++IKG+++ L+ L A+ V +F DPPYN +D
Sbjct: 44 FDNRLIKGDNLLALKALEAEFAGRVKCVFIDPPYNTGSAFT--------------HYDDG 89
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ R L RR+L +G+LW+ + + + +
Sbjct: 90 LEHSIWLGLMRDRLEIIRRLLSDDGSLWITIDDNEAHYLKVLCDEVFGRRNYLTSVVWEK 149
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS---GS 192
F +H+ ++ + +P G T N E D +
Sbjct: 150 DKGRRSDTTFSASHDYVLIYARNPDLFGKTRNLLERTEDQESRYRNPDNDPRGPWLQGDN 209
Query: 193 ERLRNKDGEKLHPTQKP 209
++ P P
Sbjct: 210 GTAKSSSEGSRFPVVLP 226
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKL------HPTQKPEALLSRILVSSTKPGDIILDP 230
V R+ W ++ + KL PT KPE LL RI +T PGD++LD
Sbjct: 277 GVVPRTWWPADEAGHNQEAKRDHLNKLLRDVEPFPTPKPERLLHRIFSIATNPGDLVLDS 336
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
F GSGT+GAVA K+ R +I +E+ + R+ V +
Sbjct: 337 FAGSGTTGAVAHKMGRRWIMVELGEHCHTHIVPRLQKVIDGQD 379
>gi|300115415|ref|YP_003761990.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii
C-113]
gi|299541352|gb|ADJ29669.1| Site-specific DNA-methyltransferase (adenine-specific)
[Nitrosococcus watsonii C-113]
Length = 646
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 23/159 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD---------A 67
K+ I+G+++ VL+ L V +I+ DPPYN + PD +
Sbjct: 93 KNLFIEGDNLEVLKLLQKSYANKVKMIYIDPPYNTG--KEFIYPDKFQENLDTYLKYTGQ 150
Query: 68 VTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
V D K SS + L R +L +G +++ + I + +
Sbjct: 151 VDDEGMKLSSNSESTGRKHTNWLNMMLPRLKLARNLLTHDGVIFISIDDNEIANLKLLCN 210
Query: 120 N-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V NP + + + HE L+ +
Sbjct: 211 DIFGEECFAGKVIVLCNPKGRSQDKYLASCHEYLLIYTK 249
>gi|222036042|emb|CAP78787.1| Type III restriction-modification system StyLTI enzyme mod (EC
21172) [Escherichia coli LF82]
gi|312948924|gb|ADR29751.1| hypothetical protein NRG857_21720 [Escherichia coli O83:H1 str. NRG
857C]
gi|324005145|gb|EGB74364.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
Length = 672
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 25/183 (13%)
Query: 1 MSQKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ K LA +++ N E K+ +IKG+++ VL+ + + V +I+ DPPYN +
Sbjct: 74 LPPKTLLAEDKDHNQREENKNSQNLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKD 133
Query: 55 GQLYRPDH-------SLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKP 98
G Y D S + + K SS A+ F L R +L+
Sbjct: 134 GFAYNDDRKFTPEQLSDLAGIDLDEAKRILEFTTNGSSSHSAWLTFIYPRLYIARELLRE 193
Query: 99 NGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+G +++ + + ++ T+ + + N +G N HE ++ +
Sbjct: 194 DGVIFISIDENELNQLKTICDEIFGEANFIENIVWNKRIPKNDKG--IGNIHEYILAYAK 251
Query: 158 SPK 160
+ +
Sbjct: 252 NNE 254
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 39/219 (17%), Positives = 62/219 (28%), Gaps = 18/219 (8%)
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDA--FTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + + +D KF S YD L R W
Sbjct: 274 EKLKKEKVPLDKAEQQLKKFYSSNGYDRGITLYNGLNEDYRPWGKINMSWPNADSFGPTY 333
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
N + D WR N +R + + G +
Sbjct: 334 EVLHPLTNNPVKIPDRGWRWKEGTFNHIAKRIDGKYADIKKLHDGSVICGGIWFASTENT 393
Query: 174 AN---------EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
E+ +RS G E G+ KP +L+ + S
Sbjct: 394 QPSSVKFLDEVEEFLLRSIISTKSDGGVEVENLFGGKGYFSYPKPTSLIKTLFGSVKTED 453
Query: 225 -DIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD 256
DI LD F GSGT+ +L R+FI +++ ++
Sbjct: 454 KDIYLDFFAGSGTTAHGILELNIEDGRKRNFICVQLDEE 492
>gi|296314113|ref|ZP_06864054.1| type III restriction-modification system EcoP15I, modification
subunit [Neisseria polysaccharea ATCC 43768]
gi|296839263|gb|EFH23201.1| type III restriction-modification system EcoP15I, modification
subunit [Neisseria polysaccharea ATCC 43768]
Length = 566
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 34/230 (14%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA---------- 67
+ +I+G+++ VL+ L SV +I+ DPPYN +G +Y+ D A
Sbjct: 38 NLLIRGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELARLANIDE 97
Query: 68 ------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + +S A+ F L R +LK +G +++ + ++
Sbjct: 98 DEAARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKL----- 152
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN-----YDALKAANE 176
L D V+ + N A K+ Y N
Sbjct: 153 ----LCDEVFGEGNFYGTATWTATTKAMNAGTAKYKLQKSDEYILIYGMVSMQEHPPFNL 208
Query: 177 DVQMRSDWLIPICSGSE-RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+++ + +G E R K +K E ++ IL + G+
Sbjct: 209 EIKEEKSYPFKSSNGDEYREEEIQQRKNTGIKKSEKMVFPILGRYPREGN 258
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
NE + SE ++ E T KP L+ +++ T D++LD
Sbjct: 294 NESYYPLWIDMSDTVGTSENGKSIVLNLLQKEHGFETIKPLDLIEKLIFHCTGKNDLVLD 353
Query: 230 PFFGSGTSGAVAKK------LRRSFIGIEM 253
F GSGT+ R FI +++
Sbjct: 354 FFAGSGTTAHALMNLNLIDDGNRKFITVQL 383
>gi|239622093|ref|ZP_04665124.1| adenine specific DNA methylase Mod [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515284|gb|EEQ55151.1| adenine specific DNA methylase Mod [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 622
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 67/214 (31%), Gaps = 19/214 (8%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG---QLYRPD 61
+ E ++ I+G+++ L+ L V LI+ DPPYN + +
Sbjct: 71 PVKERSKDWDTTRNLYIEGDNLDALKLLRENYAGKVKLIYIDPPYNTGHDFVYDDDFSQT 130
Query: 62 HSLVDAVTDSWDKFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
H +A + +++ + + LL R + +G +++ +
Sbjct: 131 HDEFNAESGEYNEEGGRLVANPESNGRFHSDWCSMIYPRLLLARDLFTQDGAIFISIDDN 190
Query: 110 NIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
+ + D + + P + F +H+ ++ + +
Sbjct: 191 EDKNLKNICDEIFGASNFVDTIIWQKRYSPQNAVQWFSESHDYILVYAKNKSQWFPNLLK 250
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
+ + +D P + + G K
Sbjct: 251 RSDEMNARYTNRDNDPRGPWKPENSTAQGGHGTK 284
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 30/143 (20%)
Query: 181 RSDWLIPICSGSERLRNKDGEKL----------HPTQKPEALLSRILVSSTKPGDIILDP 230
+ I +E N++G+K T KP L+ RIL ++ +ILD
Sbjct: 343 QGVACQTIWPYTEVGHNQEGKKELKALFPEEVPFDTPKPTRLMKRILDIASDKDSLILDF 402
Query: 231 FFGSGTSGAVAKKLR------RSFIGIEM--------------KQDYIDIATKRIASVQP 270
F GS T G + R FI +++ ++ I A ++I S
Sbjct: 403 FSGSATMGEAVIQENADDEGQRKFILVQLPEETTGQYSTLTEIGEERIRRAGEKIKSEIE 462
Query: 271 LGNIELTVLTGKRTEPRVAFNLL 293
N +LT+ + P + F +L
Sbjct: 463 AENAQLTLDGTPKKVPDIGFRVL 485
>gi|260219903|emb|CBA26901.1| hypothetical protein Csp_G38950 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 629
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/219 (20%), Positives = 80/219 (36%), Gaps = 23/219 (10%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ +I+G++ L L + V +I+ DPPYN +Y + D W
Sbjct: 72 RNLVIEGDNFDSLRLLRSTHAGKVRVIYIDPPYNTGNKDWVY---NDNYVGANDRWR--- 125
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ F L R +L +G + V + N R+ ++ + + ++
Sbjct: 126 -HSQWLEFLYQRLSLARELLTADGVILVSINDENRSRLELLMDEVFPGRRLGSIVWRTRQ 184
Query: 137 MPNFRGRRFQNA-HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS----G 191
N F +A HE ++ + A F+ +N D R DW I +
Sbjct: 185 GSNADQLCFLSADHEHVLVYGNAGFAFQG-FDKSYEMYSNIDNDPRGDWRIGDITLGFSY 243
Query: 192 SER------LRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
ER L++ +P PE++ + KPG
Sbjct: 244 KERPNLYYPLKDPKTGITYPCS-PESVWRYASEARLKPG 281
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR----- 245
G+ ++ G++ KP +L+ +L +T+ DI+LD F GSGT+G L
Sbjct: 396 GARQVAQIFGDRAFNYAKPASLIKGLLSQATRKTDIVLDFFAGSGTTGQAVLDLNAEDGG 455
Query: 246 -RSFIGI 251
R FI
Sbjct: 456 QRQFILC 462
>gi|317013292|gb|ADU83900.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori Lithuania75]
Length = 439
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 77/218 (35%), Gaps = 27/218 (12%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + ++ +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNQSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL R +LK +G +++
Sbjct: 134 FSQSNEEVLKQLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ ++ + RK+ N HE L+ + + + +
Sbjct: 194 DNECAQLKLLCDEIFGEGNFVADFIRKTKSTTNDAKIGVNYQHEFLLCYAKNKE---FVN 250
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
K +D + + ++ + + +
Sbjct: 251 LLGGEKNLENYKNPDNDPNGAWINDNPSAKSGNMKTGY 288
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + SD + ++ L + + + K +++I+ +T+ GDIILD F GSGT
Sbjct: 354 DSLIFSDNCYMNQAATKELLSLELAEYFTYPKGVDFMAKIVEHATEKGDIILDFFAGSGT 413
Query: 237 SGAVAKKLR 245
+ +
Sbjct: 414 TAHAVLESN 422
>gi|315295559|gb|EFU54883.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
Length = 185
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 26/193 (13%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 6 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 62
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 63 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 99
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 100 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 159
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 160 QQRLAAVQRAMQQ 172
>gi|313667103|gb|ADR72998.1| M.BstEII [Geobacillus stearothermophilus]
Length = 433
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 17/165 (10%)
Query: 18 EWKDKIIKGNSISVLEKLPAKS-----VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
++ ++II G+++ +L L V LI+ DPPY + + +H ++
Sbjct: 51 DYYNQIIFGDNLYILRTLLDNKDIVGKVRLIYIDPPYGTNSSFKSRSQEH--------AY 102
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVW 131
D + Y F R L+ R +L +G+++V H F + ++ + +
Sbjct: 103 DDNLIGDKYLEFIRQRLILMRELLADDGSIYVHLDSHMAFPVKIIMDEVFGQQNFRNWIT 162
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
R+ N+ +++ N + +++ S + Y FN E
Sbjct: 163 RQKCNPKNYTRKQYGNISDYILFYSKTKN---YVFNQPFQPWDEE 204
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 183 DWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ I + N++ + +PT+K +L +I+++S+ GDI+LD F GSGT+ AVA
Sbjct: 287 IPVQDIWLNFKDAHNQNAKITGYPTEKNPNMLKQIILASSNEGDIVLDAFAGSGTTIAVA 346
Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
++ RR +I I+ I R+
Sbjct: 347 EEHRRKWIAIDNSSLAIKTMLNRL 370
>gi|296112748|ref|YP_003626686.1| modification methylase MboIB [Moraxella catarrhalis RH4]
gi|295920442|gb|ADG60793.1| modification methylase MboIB [Moraxella catarrhalis RH4]
gi|326563756|gb|EGE14007.1| modification methylase MboIB [Moraxella catarrhalis 46P47B1]
gi|326564371|gb|EGE14599.1| modification methylase MboIB [Moraxella catarrhalis 12P80B1]
gi|326566776|gb|EGE16915.1| modification methylase MboIB [Moraxella catarrhalis 103P14B1]
gi|326567381|gb|EGE17496.1| modification methylase MboIB [Moraxella catarrhalis BC1]
gi|326569906|gb|EGE19956.1| modification methylase MboIB [Moraxella catarrhalis BC8]
gi|326571492|gb|EGE21507.1| modification methylase MboIB [Moraxella catarrhalis BC7]
gi|326575225|gb|EGE25153.1| modification methylase MboIB [Moraxella catarrhalis CO72]
gi|326577637|gb|EGE27514.1| modification methylase MboIB [Moraxella catarrhalis O35E]
Length = 112
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+K N D Q + W +P E+ + K HPTQKP LLSRI++SST+ GD+ILDP
Sbjct: 1 MKKLNGDKQAKDVWRLPAVGSWEKTQGK-----HPTQKPLGLLSRIILSSTQKGDLILDP 55
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
F GSGT+G A L R FIGI+ + ++++++ +R ++ P E
Sbjct: 56 FSGSGTTGIAATILGRQFIGIDKELEFLELSKRRYQAITPKSKYEFKQK 104
>gi|195940396|ref|ZP_03085778.1| putative methylase [Escherichia coli O157:H7 str. EC4024]
Length = 209
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 26/193 (13%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 30 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTY---TSK 86
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 87 AAYVGYRHECAYILAKGRPALPQKPLPDVLGW-----------------------KYSGN 123
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ + Y
Sbjct: 124 RHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAG 183
Query: 262 TKRIASVQPLGNI 274
+R+A+VQ
Sbjct: 184 QQRLAAVQRAMQQ 196
>gi|169838492|ref|ZP_02871680.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [candidate
division TM7 single-cell isolate TM7a]
Length = 100
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/90 (54%), Positives = 65/90 (72%)
Query: 51 LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+Q G+L R D + + V D WDKF SF YD F WL C+R+LK +G++ +IGS+ N
Sbjct: 1 MQTEGELLRTDGTKFNGVEDEWDKFDSFYEYDNFCNNWLKECKRILKKDGSICIIGSFQN 60
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
IFRIG ++QNL FWI+NDI+W KSNP+PNF
Sbjct: 61 IFRIGYLMQNLEFWIINDIIWNKSNPVPNF 90
>gi|323703223|ref|ZP_08114875.1| Site-specific DNA-methyltransferase (adenine-specific)
[Desulfotomaculum nigrificans DSM 574]
gi|323531779|gb|EGB21666.1| Site-specific DNA-methyltransferase (adenine-specific)
[Desulfotomaculum nigrificans DSM 574]
Length = 637
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/218 (11%), Positives = 70/218 (32%), Gaps = 19/218 (8%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------GQLYRPD 61
E+ + ++ I+G+++ VL+ L + +I+ DPPYN + ++ +
Sbjct: 85 EDSKNPDTTENLYIEGDNLEVLKLLRNSYYNRIKMIYIDPPYNTGKDFIYRDNFKVSEEE 144
Query: 62 HSLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+++ + D + + + L + +L +G +++ + +
Sbjct: 145 NAVSEGEIDLLGERLIVNQKSSGRYHSNWLSMMYPRLKVAKDLLTEDGVIFISIDDNEVD 204
Query: 113 RIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + + P + F H+ ++ +
Sbjct: 205 NLKKICNEVFGEDNFVACIIWERAYSPVNLKKHFSENHDFVLCYAKQIDNLICNGLKRTD 264
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
++ + +D P + EK + P
Sbjct: 265 ESIDRYKNPDNDPRGPWKPADLSVGPAIQEKRYEIITP 302
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIE 252
DG+ K L+ R++ K II+D F GS T+ + R FI ++
Sbjct: 380 DGKSYFDYPKSVDLIKRMIELYAKQDSIIMDFFSGSATTAHAVMQLNAEDGGNRKFIMVQ 439
Query: 253 M 253
+
Sbjct: 440 L 440
>gi|284048452|ref|YP_003398791.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
DSM 20731]
gi|283952673|gb|ADB47476.1| DNA methylase N-4/N-6 domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 855
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 13/220 (5%)
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
NI GT N +G +++ ++ +
Sbjct: 350 DNKNIKLFGTWSLNAQGNEKQQGYQYNGKTYYPPKGTQWKTSYPNGLNDLKIANRLQEEG 409
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +K ED + L + +G +K++ Q P + R ++ ++ P D+
Sbjct: 410 DNLRVKLYYEDYPIS--RLNNLWTGI----GAVNDKMYVVQTPNEIPKRCILMTSDPDDL 463
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ------PLGNIELTVLT 280
+LD GSGT+ VA++ R +I + + I++A +R+ + + ++
Sbjct: 464 VLDITCGSGTTAYVAEQWGRRWITCDTSRVAIELAKERLMTASFDYYKLAHPDQGISSGF 523
Query: 281 GKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
+T P + + + L + V G
Sbjct: 524 IYKTVPHITLKS-IANNEPPAEETLYDQPEIDKTKVRVSG 562
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 25/210 (11%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL--YRPDHS------- 63
+W +++I G+S+ V+ L V + + DPPY ++ + D S
Sbjct: 137 DWTNRLIAGDSLVVMNSLLEKEGMAGQVQMCYIDPPYGIKYGSNFQPFVNDMSLKSGDKD 196
Query: 64 --------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
++ A D+W+ +Y + R +L +LK +G++++ S N+ +
Sbjct: 197 EDLTQEPEMITAFRDTWELG--IHSYLTYLRNRILLSYNLLKDSGSIFIQISDENVHFVR 254
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ + F + +A L+W + + + +
Sbjct: 255 NICDEIFGPENFVSQISIKKGSVMFAKKLLNSATYYLVWYAKDKNKIKFHSLFKKKDPQD 314
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
S + G + + K H
Sbjct: 315 FADTCGSHLWLENIHG-QGCKRVPPNKRHN 343
>gi|78221896|ref|YP_383643.1| DNA methylase N-4/N-6 [Geobacter metallireducens GS-15]
gi|78193151|gb|ABB30918.1| DNA methylase N-4/N-6 [Geobacter metallireducens GS-15]
Length = 520
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L V I+ DPPYN Q S D +
Sbjct: 37 NLLIQGDNLKALKALLPFYRGRVKCIYIDPPYNTQ----------SAFAHYDDKLE---- 82
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
+ + L+ R +LK +G+LW+ + I ++ + + D+ W+K +
Sbjct: 83 HSQWLSMMYPRLVLLRELLKEDGSLWISCDDNEAHYIKVIVDEIFGRLNFIIDVSWQKRD 142
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG 163
PN R + H + S +K
Sbjct: 143 GPPNDRKIGAIHEHILVWGKGKSGNSKK 170
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
SD + + SE + + T KPEALL RI+ +T PGD++LD F GSGT+ AVA
Sbjct: 291 SDTGLNQHASSEIEKLFGEKAAFETPKPEALLQRIIHIATNPGDLVLDSFLGSGTTAAVA 350
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
K+ R +IGIEM + + R+ V ++ + L
Sbjct: 351 HKMGRRWIGIEMGEHAVTHCLPRLEKVIGGEPGGIS-----KAVDWQGGGGFRFHSL--- 402
Query: 302 GQILTNAQGNISATVC 317
G+ + +A G I V
Sbjct: 403 GEPVFDADGGIHPAVR 418
>gi|57238157|ref|YP_179407.1| site-specific DNA-methyltransferase [Campylobacter jejuni RM1221]
gi|88596378|ref|ZP_01099615.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
jejuni 84-25]
gi|57166961|gb|AAW35740.1| site-specific DNA-methyltransferase [Campylobacter jejuni RM1221]
gi|88191219|gb|EAQ95191.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
jejuni 84-25]
gi|315058718|gb|ADT73047.1| Adenine-specific methyltransferase [Campylobacter jejuni subsp.
jejuni S3]
gi|315927088|gb|EFV06439.1| DNA methylase family protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
Length = 251
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 28/238 (11%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL N G + + D + F
Sbjct: 21 KAQLVIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSK 80
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + + V S+ + + + F ++V+RK + +
Sbjct: 81 MLIKEPKECGKSPCMIVFCSFEQQTMLIEVAKKYGFNHYINLVFRKQSSSQVLKANM--- 137
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ + + K N+ + + +++ K+HPTQ
Sbjct: 138 ------KIVGNCEYALILYREKLPKFNNDGKMIYNCMDWQ--------KDEGIPKVHPTQ 183
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KP LL R++ T GD+++DP GSG++ A L R G E+K+D+ A + +
Sbjct: 184 KPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSANEIM 241
>gi|169830888|ref|YP_001716870.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169637732|gb|ACA59238.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 545
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 39/178 (21%)
Query: 19 WKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDS 71
WK+K G+++ ++ +P SVDLI+ DPP+N + + + + A D+
Sbjct: 5 WKNKFYFGDNLGIMRDYIPDGSVDLIYLDPPFNSNATYNVLFQEKNGTQSAAQITAFEDT 64
Query: 72 WDKF-------------------------------SSFEAYDAFTRAWLLACRRVLKPNG 100
W + AY LL RVLK G
Sbjct: 65 WHWGLESEEAYREVVTGGPKRLADLIQALRSFLGQNDMMAYVVMLAIRLLDMHRVLKSTG 124
Query: 101 TLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
++++ + ++ + + + N + R+F H+ L++ S
Sbjct: 125 SIYLHCDPTASHYLKLIMDSIFGARHFRNEIIWRRTNAHNMKSRQFPRIHDVLLFYSK 182
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
M I + R+ N E+L +PTQKPEALL RI+ +S+ GD++LDPF G GT+
Sbjct: 277 MPGKIADSIWADIPRVGNTSKERLGYPTQKPEALLKRIINASSNEGDLVLDPFCGCGTTV 336
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIA 266
VA+ L R +IGI++ I R+
Sbjct: 337 TVAELLNRRWIGIDITHLAIAHMKHRLE 364
>gi|227876052|ref|ZP_03994171.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
mulieris ATCC 35243]
gi|306819328|ref|ZP_07453037.1| type III restriction-modification system EcoP15I [Mobiluncus
mulieris ATCC 35239]
gi|307700074|ref|ZP_07637122.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
gi|227843351|gb|EEJ53541.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
mulieris ATCC 35243]
gi|304647906|gb|EFM45222.1| type III restriction-modification system EcoP15I [Mobiluncus
mulieris ATCC 35239]
gi|307614724|gb|EFN93945.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
Length = 626
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 78/237 (32%), Gaps = 31/237 (13%)
Query: 18 EWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-----HSLVDAVT 69
E ++ I G+++ L L V I+ DPPYN +G +Y+ D LVD +
Sbjct: 93 ESENLYIVGDNLDALGHLVKSYAGMVKCIYIDPPYNTGSDGFVYQDDFGFTARQLVDKIG 152
Query: 70 DSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
S D+ SS A+ F L + +L +G +++ + + +
Sbjct: 153 ISEDEARRVLDMRGKSSHSAWLTFMYPRLALAKELLSDDGVIFISIDDNEQANLKLLCDE 212
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + ++ H+ L + + ++ +
Sbjct: 213 IFGEQNFVASFVIVRSEGGGLAKQAVIGHDYLPTYAKNIDKFIPLGRPKDIRGKIINKDG 272
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI-------LVSSTKPGDIILDP 230
W+ E + + T E ++ + + + + GD +L P
Sbjct: 273 VDYWIETDWLRKEFGK-------YGTCYYEEIVRYLGVEKKREIDAGIESGDYVLVP 322
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 204 HPTQKPEALLSRILVSST----KPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP L+ ++ T DI+LD F GS T+ + R +I +++
Sbjct: 375 FSFPKPVELVKSVVQGCTILSKNDSDIVLDFFSGSSTTADAVMQLNAEDGGNRRYIMVQL 434
>gi|226324847|ref|ZP_03800365.1| hypothetical protein COPCOM_02634 [Coprococcus comes ATCC 27758]
gi|225207295|gb|EEG89649.1| hypothetical protein COPCOM_02634 [Coprococcus comes ATCC 27758]
Length = 287
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 20/258 (7%)
Query: 39 SVDLIFADPPYNLQLNG-----------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LI AD PYN+ N L + + D + Y F
Sbjct: 26 KAQLIIADVPYNVGRNFYGSNPMWYVGRDNKNGKSKLAEEAAFNSDFNFNLYEYFHFCSK 85
Query: 88 WLLACRRVLKPNG------TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
L + G + V S+ + + + F +V+ K+ +
Sbjct: 86 MLKKEPKKAGKCGRSSDAPCMIVFCSFEQLSTLINAAKKHGFVNYIPLVFVKNYSPQVLK 145
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + + +R + KD
Sbjct: 146 ANM---RIVGATEYALVLYRDKLPKFRNGAQFDENGKTIRGTGHMVFNWFKWEKDGKDIP 202
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKP LL +++ + T PGD+++DP GSG++ A+ L RS G E+ +++ A
Sbjct: 203 KIHPTQKPVRLLEQLIQTFTDPGDVVIDPCCGSGSTLRAARNLGRSAFGFEIDRNFYARA 262
Query: 262 TKRIASVQPLGNIELTVL 279
+ V+ + +T
Sbjct: 263 KNEMLKVEKEQQMNITDF 280
>gi|189500097|ref|YP_001959567.1| Site-specific DNA-methyltransferase (adenine-specific) [Chlorobium
phaeobacteroides BS1]
gi|189495538|gb|ACE04086.1| Site-specific DNA-methyltransferase (adenine-specific) [Chlorobium
phaeobacteroides BS1]
Length = 644
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/223 (13%), Positives = 67/223 (30%), Gaps = 24/223 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G++ VL+ L + +I+ DPPYN + D
Sbjct: 89 EESVNFDTTENLYIEGDNFEVLKILQESYLCKIKMIYIDPPYNTGNDFIYKDNFAKSKDE 148
Query: 68 VTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + + L+ R +LK +G +++ H +
Sbjct: 149 YEEELGTIDEEGGKLFRNSDSNGRFHSDWLSMMYERLVVARDLLKDDGVIFISIDEHELV 208
Query: 113 RIGTML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ ++ + ++ ++WRK+ N + I K + + +
Sbjct: 209 SLAKIMEEIFGSNNMDFLIWRKNGKQGNTKKINRFKITHEYILVGYKNKYETFIAKTKLM 268
Query: 172 KAANEDVQMRSDWLIPICSGS-----ERLRNKDGEKLHPTQKP 209
+ + E N + E + P
Sbjct: 269 PNWKGEKGNPDNDPRGPWESGVISRAEEKSNVNSENYYSITLP 311
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIG--- 250
++ T KP +L + ST+ DIILD F GS T+ + R FI
Sbjct: 383 NKEFFDTPKPTKILKELSRCSTEKDDIILDFFSGSATTAQAVMQLNSEDGGNRKFIMAQL 442
Query: 251 ---IEMKQDYIDIATKRIASV 268
+ + K IA +
Sbjct: 443 PEPCDENSEAFKAGYKTIAEI 463
>gi|308185164|ref|YP_003929297.1| putative type III restriction enzyme M protein [Helicobacter pylori
SJM180]
gi|308061084|gb|ADO02980.1| putative type III restriction enzyme M protein [Helicobacter pylori
SJM180]
Length = 612
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 18/193 (9%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 166 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
++ F + L A R L +G ++V + + ++ + + +
Sbjct: 212 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFGRDNFVNTIIWEKKY 271
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
P + F + H+ ++ + + + + +D S +
Sbjct: 272 SPQNHTKWFSDNHDFILLYAKDKEIWRPILLPRTSEMDARYKNLDNDERGVWKSSDLSVG 331
Query: 197 NKDGEKLHPTQKP 209
+ ++P P
Sbjct: 332 SAVERNIYPIFNP 344
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 55/107 (51%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+ L T KPEALL RIL STK D++LD F GSGT+ AVA K++R +IGIE
Sbjct: 423 EGQALFDTPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIE 482
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
I +R+ V ++ + + L E L QIL
Sbjct: 483 TITKERLKKVMEGEQGGISKKCDFKGGGSFVYAELKEVNLEIKKQIL 529
>gi|118575846|ref|YP_875589.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
gi|118194367|gb|ABK77285.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
Length = 786
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 90/244 (36%), Gaps = 31/244 (12%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQL 57
++ ++ +++N W +++I G+S+ V+ L A +V +I+ DPPY ++
Sbjct: 58 EEKAIQFYQHKNG---WSNRLIGGDSLLVMNSLLRKERMADTVQMIYIDPPYGIKYGSNF 114
Query: 58 Y-------RPDHSLVD---------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
D S D A D+WD +Y ++ R L+ R +LK +G+
Sbjct: 115 QPFVSKKEVKDGSDKDLAYTPETIHAFKDTWDLE--IHSYISYLRDRLVLSRELLKVSGS 172
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ V S N+ + ++ + + + + + +IW + +
Sbjct: 173 IGVQISDENMHYVRMLMDEVFGKKNFVGIIQYRTTATSITKSSIPIVCDYIIWYAKNKSE 232
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
Y Y+ D + ER R E+ +P PE +V+
Sbjct: 233 LKYNPIYEKRSFPIND-----PNYRFVEINGERRRMSPEERRNPNLLPEGSKIYRIVALV 287
Query: 222 KPGD 225
G
Sbjct: 288 SQGG 291
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 8/161 (4%)
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-KAKGYTFNY 168
I+RI ++ V+ P + G T N
Sbjct: 279 KIYRIVALVSQGGQSNQYTYVFNNKKYKPPANRSWSIKEDGIKNLEKKNRLVVSGNTINR 338
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ Q+ + WL G E K + Q + R ++ +T PGD++
Sbjct: 339 VSYFHETNYEQLNNMWLDTTSGGFEG-------KTYVVQTTAKTIRRFMLMTTDPGDLVF 391
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
DP GSGT+ V+++ R +I ++ ++ I +A +RI + +
Sbjct: 392 DPTCGSGTTAYVSEEYGRRWITVDTQRVAITLAKRRIMASK 432
>gi|289579736|ref|YP_003478202.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
gi|289529289|gb|ADD03640.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
Length = 360
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/285 (21%), Positives = 103/285 (36%), Gaps = 35/285 (12%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
E ++ G+S L + +V+L+ PPY +++ L+ + +S
Sbjct: 1 METTHRVFVGDSRD-LAAVGDDTVELVVTSPPYPMIEMWDDLFTELDPAIGDALESGAGR 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLW---------VIGSYH---NIFRIGTMLQNLNF 123
+FEA A RVL G V GS+ N R+ ++ F
Sbjct: 60 RAFEAMHAQLDRVWDEVERVLVDGGIACINVGDATRSVDGSFRVFSNHARVLEAFESRGF 119
Query: 124 WILNDIVWR---KSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGY----TFNYDAL 171
L D++WR S G NA HE ++ +++ + Y+A
Sbjct: 120 DPLPDVLWRKPTNSAAKFMGSGTLPPNAYVTLEHEYVLLFRNGGESRSFEPGADRRYEAA 179
Query: 172 KAANEDVQMRSDWLIP---------ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
E SD +ER + P + R++ +
Sbjct: 180 YFWEERNNWFSDVWTDVKGELQHLEQPDNTERSGQDTDLRDRSAAYPFEIPYRLITMYSA 239
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GD +LDPF+G+GT+ A R IG E++ + D+ +R+
Sbjct: 240 YGDTVLDPFWGTGTTTLAAMCAGRHSIGQELETGFRDVFDERVER 284
>gi|192292172|ref|YP_001992777.1| Site-specific DNA-methyltransferase (adenine-specific)
[Rhodopseudomonas palustris TIE-1]
gi|192285921|gb|ACF02302.1| Site-specific DNA-methyltransferase (adenine-specific)
[Rhodopseudomonas palustris TIE-1]
Length = 566
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/199 (12%), Positives = 60/199 (30%), Gaps = 21/199 (10%)
Query: 19 WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + +I+G+++ L+ L A + + DPPYN + +D
Sbjct: 45 FDNLLIQGDNLLALKALEASYTGRIKCVIIDPPYNTGSAFK--------------HYDDG 90
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ + R L RR++ +G+LW+ + + + V +
Sbjct: 91 LEHSLWLSLMRDRLDLIRRLMSEDGSLWITIDDNEAHYLKILCDEVFGRSNFVANVVWQK 150
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW---LIPICSG 191
+ F +H+ ++ + + D +
Sbjct: 151 KYSKQNDAKHFSTSHDHILVFAKNKNEWAPNKVGRNQSQLKGYSNPDDDPRGLWTSVVYT 210
Query: 192 SERLRNKDGEKLHPTQKPE 210
+ R + +P + P
Sbjct: 211 CSKTRAERPNLFYPIKHPV 229
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
E V + WL ++ R + + E T KPE+L+ +++ +T PGD++LD F
Sbjct: 280 EGVVPSTIWLRDEVGDNQDARREAMALNSEGSFSTPKPESLIRQMVSIATAPGDLVLDSF 339
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
GSGT+GAVA K+ R +I +E+ + R+
Sbjct: 340 AGSGTTGAVAHKMGRRWIMVELGDHAVTHIVPRLK 374
>gi|262369475|ref|ZP_06062803.1| DNA methylase N-4/N-6 [Acinetobacter johnsonii SH046]
gi|262315543|gb|EEY96582.1| DNA methylase N-4/N-6 [Acinetobacter johnsonii SH046]
Length = 515
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 18/151 (11%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ II+G+++ L+ L V IF DPPYN Q S + D +
Sbjct: 38 ENLIIQGDNLQALKALLPLYGGQVKCIFIDPPYNTQ----------SAFEHYDDKLE--- 84
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSN 135
+ + L + +L +G++W+ + + M + +
Sbjct: 85 -HAQWLSMMYPRLQLLKELLAEDGSIWITLDDNEAHYLKVMCDEVFGRKNFLSNFVWQKS 143
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + F HE ++ + + + +
Sbjct: 144 YGGGSKAKWFVGLHENILCYAKNTEVFPEMW 174
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ +E ++ KPE LL+ +L T D+ILD F GSGT+ AVA
Sbjct: 282 NGHYTQHGTNESVKLFGQSDKFSFPKPEGLLNILLECCTDKNDLILDSFLGSGTTAAVAH 341
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
K+ R +IGIEM + R+ V ++ +T G
Sbjct: 342 KMGRRYIGIEMGEHAKTHVIPRLEKVIDGEQGGIS-----KTVNWQGGGGF---SFYTLG 393
Query: 303 QILTNAQGNISATVC 317
+ + G ++A V
Sbjct: 394 SSVFDDNGFLNADVK 408
>gi|104774131|ref|YP_619111.1| Type III restriction-modification system methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
gi|103423212|emb|CAI98032.1| Type III restriction-modification system methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
Length = 624
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 19/203 (9%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
+K + + ++ I+G+++ L+ L V +I+ DPPYN +
Sbjct: 87 EKEKSVGRDGTPGGVDSENIYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYED 146
Query: 60 PDHSLVDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWV 104
VD D+ + + L + +L P+G +++
Sbjct: 147 DFAQSVDEYADNSGQTDEEGNRLVQNSESNGRFHTDWLNMIYPRLRLAKDLLAPDGLIFI 206
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ + + K + HE ++
Sbjct: 207 SIDDNEFGNLKKICDEIFGTQSFLATFVWKRRSSSQLDKSKCSTDHEYVLAYKREKFTAL 266
Query: 164 YTFNYDALKAANEDVQMRSDWLI 186
+ D +N D R W
Sbjct: 267 RGIDKDYKGYSNPDSDPRGPWTP 289
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 15/159 (9%)
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + S + +N S P K +
Sbjct: 299 DMRPNQYYDLVDPKTGKVYKPNYNRVWSYIPESMNQLIKENRIVFPEDTSKRPMRKRF-- 356
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLR---NKDGEKLHPTQKPEALLSRILVSSTKP 223
N +S WL + E + + G+ P KP +L+ +++ +T+
Sbjct: 357 ----ASELNSATNPQSTWLSDVGMNIEGTKQMYDLFGKSFFPYTKPMSLIKSLILQATEK 412
Query: 224 GDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD 256
II+D F GS T+ A +L R +I ++++++
Sbjct: 413 DSIIVDFFSGSATTAQAAMQLNAEDGGKRKYILVQLQEE 451
>gi|328948541|ref|YP_004365878.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
gi|328448865|gb|AEB14581.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
Length = 396
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
I E ++ +I G+++ L L +DLI+ DPP+ + S + +
Sbjct: 24 SKPISEKENILINGDNLEALRILVHNSNLKGKIDLIYIDPPFATNGTFTISEERASTISS 83
Query: 68 VTDSWDKFSSF---EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
++ E + F R L+ R +L G++++ Y + ++
Sbjct: 84 SKKDEIAYTDNLLGEKFLEFLRERLILARELLSERGSIYLHIDYKIGHYVKIIMDEIFGT 143
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ + R NF + + N + +++ S + +N + ++ED
Sbjct: 144 KNFRNDITRIKCNPKNFSRKAYGNIKDLILFYSKASNP---IWNEPFIPFSDEDK 195
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
++PT+K LL I+ +S+ P +++D F GSGT+ A++L R++IGI+ + I++
Sbjct: 291 VYPTEKNLDLLKLIVQTSSNPESLVMDFFCGSGTTLIAAQELGRNWIGIDKSEKAIEVTR 350
Query: 263 KRIASVQ 269
K+I
Sbjct: 351 KKITKEN 357
>gi|124486021|ref|YP_001030637.1| hypothetical protein Mlab_1201 [Methanocorpusculum labreanum Z]
gi|124363562|gb|ABN07370.1| Site-specific DNA-methyltransferase (adenine-specific)
[Methanocorpusculum labreanum Z]
Length = 636
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/246 (10%), Positives = 76/246 (30%), Gaps = 34/246 (13%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR------PD 61
E + ++ I+G+++ VL+ L + +I+ DPPYN + +
Sbjct: 87 EESKNPDSTENLYIEGDNLEVLKLLQNSYVGKIKMIYIDPPYNTGNDFVYKDHFAVSAEE 146
Query: 62 HSLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
++ + + + + + L + +L+ +G +++ + +
Sbjct: 147 NAKAEGDISAEGERYAVNPKTSGKYHANWLSMMYPRLRLAKNLLREDGIMFISIDDNEVG 206
Query: 113 RIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + L +++W K N F + H+ ++ + +
Sbjct: 207 NLREICDEIFGDNNFLANLIWEKKYTRSND-ATFFSDNHDHILCYCRNVECFKIGRLPRT 265
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + + ++ + T T ++ P
Sbjct: 266 EEMDVAYKNPDNHPKGLWKATPLHAKSGSANSANFT-------------YTFKNGVVFTP 312
Query: 231 FFGSGT 236
G+ +
Sbjct: 313 PTGTYS 318
Score = 39.6 bits (91), Expect = 0.80, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
E L++ + + KP L+ + +++ +ILD F GS T+ +L
Sbjct: 371 HNHESVEELKDIFIKNIFTNPKPTRLIRHLATIANLNHESLILDFFSGSSTTAHAVMQLN 430
Query: 246 ------RSFIGIEM 253
R FI +++
Sbjct: 431 AEDGGTRKFIMVQL 444
>gi|240850032|ref|YP_002971425.1| type III restriction-modification system methylation subunit
[Bartonella grahamii as4aup]
gi|240267155|gb|ACS50743.1| type III restriction-modification system methylation subunit
[Bartonella grahamii as4aup]
Length = 645
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 13/172 (7%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHS 63
E + + IKG+++ VL+ + V +I+ DPPYN + G ++ +
Sbjct: 84 REESVNFDNTHNLYIKGDNLEVLKLIQRAYFGQVKMIYIDPPYNTGNDFIYGDDFKDPLA 143
Query: 64 LVDAVTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
VT K + A+ L + +L+ +G +++ H + + +
Sbjct: 144 RYKEVTSQTTKSNPETMGRFHTAWLNMIYPRLRLAQTLLRDDGVIFISIDDHEVHNLRKV 203
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + G F +HE ++ + A Y + D
Sbjct: 204 CDEVFGEENFVAQLVWNLSSGTQAG-HFTRSHEYILVYARYKTALNYFKDLD 254
Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKK------ 243
GS L G KL KP ALL ++ T DIILD F GS T+
Sbjct: 384 GSSELIQLLGAKLLEYPKPTALLEYLIKHICTSDNDIILDFFAGSSTTAHAVMALNAEDG 443
Query: 244 LRRSFIGIEM 253
R FI +++
Sbjct: 444 GNRKFIMVQL 453
>gi|212694808|ref|ZP_03302936.1| hypothetical protein BACDOR_04342 [Bacteroides dorei DSM 17855]
gi|237710921|ref|ZP_04541402.1| DNA methylase N-4/N-6 [Bacteroides sp. 9_1_42FAA]
gi|212662662|gb|EEB23236.1| hypothetical protein BACDOR_04342 [Bacteroides dorei DSM 17855]
gi|229454765|gb|EEO60486.1| DNA methylase N-4/N-6 [Bacteroides sp. 9_1_42FAA]
Length = 408
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 22 KIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ +++ VL L +DLI+ DPPYN + H+ D
Sbjct: 39 RLYHADNLDVLNSLIKDESVCGKIDLIYIDPPYNTGGAFETRDSKHAYNDNF-------- 90
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSN 135
+ E Y F L+ ++L P+G+++V + +F I ++ ++ RK
Sbjct: 91 TTEGYIKFMEVRLILMHKLLSPSGSIYVHLDSNMVFHIKILMDSIFGEKNFRGMITRKKC 150
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
NF + N + +++ + S AK
Sbjct: 151 KSKNFTRTTYGNISDYILFYTKSDSAKWNRPYEQW 185
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+PT+K +L RI+ SS+ PGDI+LD F GSGT+ A++L R +IG+++ ++ I I
Sbjct: 291 TGYPTEKNIDMLKRIINSSSNPGDIVLDCFAGSGTTLVAAEELGRQWIGVDIGEEAIKII 350
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
R + ++ K + F+ L
Sbjct: 351 QNRFENGTKPLGDYVSQRKKKDEASQSLFDNLEPDN 386
>gi|150398910|ref|YP_001322677.1| adenine-specific DNA-methyltransferase [Methanococcus vannielii SB]
gi|150011613|gb|ABR54065.1| Site-specific DNA-methyltransferase (adenine-specific)
[Methanococcus vannielii SB]
Length = 646
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 57/170 (33%), Gaps = 20/170 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ E+ ++ I+G+++ VL+ L S+ I+ DPPYN +
Sbjct: 86 PVIEDSVDFENTENLYIEGDNLEVLKILRKSYSNSIKCIYIDPPYNTGKDFVYKDNFSMS 145
Query: 65 VDAV---------------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ ++ + L ++LK +G +++ +
Sbjct: 146 KEDYEAEAGAIDEEGNRLIKNTGTDGRFHSNWLNMMYPRLQLAYKLLKKDGVIFISIDDN 205
Query: 110 NIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + + + + +VW + + F+ HE ++ +
Sbjct: 206 EVDNLKKVCNEIFGENNFIAQLVWENKEGGGSSDSKFFRIKHEYILVYTK 255
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 20/189 (10%)
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ + N +N L + + N + V
Sbjct: 323 GCWRWSKTKFEWGIKNNFIEFKENTDGKLWVYTKQYFKLDHNGNPITRSVPHRGV----I 378
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
++++ G+K+ KP L+ + + +T D ILD F GS T+ +
Sbjct: 379 AKYSSTQATKQMEKIFGKKMFDYSKPYDLIQFLGLLATDKDDTILDFFSGSATTAHAVMQ 438
Query: 244 LR------RSFIGIEM------KQDYIDIATKRI----ASVQPLGNIELTVLTGKRTEPR 287
L R FI +++ + K I ++ +
Sbjct: 439 LNAEDNGSRKFIMVQLPEEVEEGTEAFKAGYKNICEIGKERIRRAAKKIQEENSDKDLSN 498
Query: 288 VAFNLLVER 296
V F V +
Sbjct: 499 VDFGFRVFK 507
>gi|293611395|ref|ZP_06693691.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826267|gb|EFF84636.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 511
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 18/145 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ II+G+++ L+ L V IF DPPYN Q S + D +
Sbjct: 38 ENLIIQGDNLQALKALLPLYGGQVKCIFIDPPYNTQ----------SAFEHYDDKLE--- 84
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSN 135
+ + L + +L +G++W+ + + + + + +
Sbjct: 85 -HAQWLSMMYPRLQLLKELLAEDGSIWITLDDNESHYLKVLCDEVFSRKNFVRNIVWQKK 143
Query: 136 PMPNFRGRRFQNAHETLIWASPSPK 160
+ ++H+ ++ S K
Sbjct: 144 YTVANDSKGIPDSHDHILVYRKSDK 168
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKD----GEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ + S W ++ R + G + T KPE L+++IL +T D++LD F
Sbjct: 267 DGILPTSWWTFDEVGHNDESRKEQKVFFGSEAFSTPKPERLITQILKIATNSNDMVLDSF 326
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSGT+ AVA K+ R +IGIEM + R+
Sbjct: 327 LGSGTTAAVAHKMSRRYIGIEMGEHAKTHVIPRLEK 362
>gi|266623396|ref|ZP_06116331.1| putative site-specific DNA methyl transferase [Clostridium
hathewayi DSM 13479]
gi|288864822|gb|EFC97120.1| putative site-specific DNA methyl transferase [Clostridium
hathewayi DSM 13479]
Length = 322
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 61/274 (22%), Positives = 99/274 (36%), Gaps = 26/274 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K + + + +I+G+ + + S+D I D PY L L +
Sbjct: 64 KGVYTVTKKNAEDEDITCMLIQGDGRDI-SFIADNSIDAIITDHPY--LLKNSLKGGNR- 119
Query: 64 LVDAVTDSWDKFSSFEAYDAF--TRAWLLACRRVLKPNGTLWVI-----GSYHNIFRIGT 116
F +YD F T+ L RVLK L G +
Sbjct: 120 -------------DFASYDLFQYTQEDLDEKFRVLKKGHFLVEFLPEENGDNYEYLYQVK 166
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ + + V K GR+ +N E + + S A+ + KA
Sbjct: 167 AMAKESGFSYYAKVAWKKGNFVANTGRKAKN-TEDIFFFSKGR-ARDMRPDAKKDKAEPG 224
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
S + + + GE++H +KP LL +I+ T ++ILD + GS +
Sbjct: 225 TCHYMSGVKGMLPTAFDIQPPPKGERVHQAEKPVKLLKQIIEFVTNEKELILDQYAGSFS 284
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
A L R I IE+ QDY + KRI +V+
Sbjct: 285 LAEAALDLDRDSISIEISQDYFEEGKKRIENVKK 318
>gi|42559533|sp|Q9LAI2|MTB1_BACSQ RecName: Full=Modification methylase BslI; Short=M.BslI; AltName:
Full=N(4)- cytosine-specific methyltransferase BslI
gi|6958314|gb|AAF32529.1|AF135191_2 BslIM [Bacillus sp. NEB-606]
Length = 912
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/279 (20%), Positives = 92/279 (32%), Gaps = 44/279 (15%)
Query: 13 QNSIFEWKD-----KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
I + + K+I+G+S VL+ + + PPY
Sbjct: 637 SPEINNFLNSGGRLKLIQGDSYEVLKSVEDNTFAAAVTSPPYYNAREYS----------- 685
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIF----------- 112
++ + Y + C R LKP I NI
Sbjct: 686 ------QWPNLYLYFNDMYNIIKECFRTLKPGSVFLYNIADIVDNENIIVKSSMGNKRIP 739
Query: 113 ---RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR--FQNAHETLIWASPSPKAKGYTFN 167
Q F +L++I+W K P N + F ++ + A T
Sbjct: 740 LGAYTIYFFQKAGFELLDNIIWDKGEPQSNRQKNDGKFTPHYQKPLNAYEHMFIFKKTGA 799
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKP-GD 225
L + + I ++ +K L H PE + + TK D
Sbjct: 800 PLTLSDDWQSKRGSWIKNIVPFQPVFKINSKGENILGHTAPFPEDIPRFVANVFTKHDND 859
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
IILDPF GS TS + K R +GIE+ DY++++ R
Sbjct: 860 IILDPFSGSLTSAIASYKSNRIGLGIELSPDYVELSRDR 898
>gi|126741181|ref|ZP_01756861.1| adenine specific DNA methylase [Roseobacter sp. SK209-2-6]
gi|126717704|gb|EBA14426.1| adenine specific DNA methylase [Roseobacter sp. SK209-2-6]
Length = 544
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 15/202 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ +++G+++ L+ L A V I+ DPPYN +Y + ++ A W
Sbjct: 39 NLLVQGDNLEALKALLPYYAGKVKCIYIDPPYNTGNENWVY--NDNVNSARIKQWLGKIV 96
Query: 73 ----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILN 127
D S + + L R L+ +G +++ + + + ++
Sbjct: 97 GAQADDLSRHDKWLCMMYPRLRLLREFLREDGVIFISIDDNELHHLILLMNEIFGPTAYV 156
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ + N + + HE ++ + + KA + SD P
Sbjct: 157 SSIAWQKVFGRNNTAKFISDTHEHIVCFARNIKALELNLLERGEGEDSRYKNPDSDPRGP 216
Query: 188 ICSGSERLRNKDGEKLHPTQKP 209
S RN ++P + P
Sbjct: 217 WTSSDLSARNPYSLGVYPLRTP 238
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 18/176 (10%)
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
S N + +G + + +A + W +
Sbjct: 223 SARNPYSLGVYPLRTPSGREIEGPPAGRYWTVSKENFEKLDADNRIWWGTKGNNFPRLKR 282
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH--------PTQKPEALLSRILV 218
+ + V S W+ ++ + + G H T KP+ L+ RIL
Sbjct: 283 FLSEVA---QGVIPNSLWMHSEVGHNQEAKQEVGSIFHEANRETLFSTPKPKRLIRRILQ 339
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQD-YIDIATKRIAS 267
+T PGDI++D F GSGT+G + R FI +EM + D +R+
Sbjct: 340 IATNPGDIVMDSFAGSGTTGHAVLDMNKQDGGNRQFILVEMDEKIAPDTTGERLRR 395
>gi|325134389|gb|EGC57034.1| hypothetical protein NMBM13399_0829 [Neisseria meningitidis M13399]
Length = 700
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 17/173 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + + ++ IIKGN++ L L V LI+ DPPYN +G Y
Sbjct: 210 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN- 268
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF + + F + L + +L +G+++V + + ++
Sbjct: 269 ------------DKF-NHSTWLTFMKNRLEIAKELLMKDGSIFVSIDDNEQAYLKILMDE 315
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+ + ++ E ++ S + K N +
Sbjct: 316 VFGNENFICNFIWEKKTGASDAKQIATITEFVLCYSKNFKTVKLNKNTFSYDT 368
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 10/194 (5%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F + L G + N + V +
Sbjct: 375 DKFEQERGKYYIDNLDRGGLQY--SDSLNFAIQCPDGTFTYPNGRTEFVNDGWIWKWSKN 432
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALK-AANEDVQMRS-------DWLIPICSGSE 193
+ + L + K G++ Y NE+ + I ++
Sbjct: 433 KIDWAITNGFLEFRKSKSKKSGWSVCYKNYMLVDNENKPIERSAPYKNLIQDILNTHATD 492
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
L+ G K+ T KPE+LL ++ +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 493 ELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIEQ 552
Query: 254 KQDYIDIATKRIAS 267
+A +R+
Sbjct: 553 MDYIETLAVERLKK 566
>gi|110668022|ref|YP_657833.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
16790]
gi|109625769|emb|CAJ52204.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
16790]
Length = 988
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 57/307 (18%), Positives = 103/307 (33%), Gaps = 77/307 (25%)
Query: 21 DKIIKGNSISVLEKLPA-------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
D+II+G+S + + L +DL PPY + + +
Sbjct: 458 DEIIRGDSRYLEKYLERVMSENLCGKIDLAITSPPYFDLKDYDV---------ETSSQIG 508
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--------------GSYHNIFRIGTMLQ 119
+ S++ Y L V+ +G+LWVI G N+ + ++ +
Sbjct: 509 QGDSYQQYLLDLETVLKQVYNVVSDDGSLWVIVNNFQTNQQVVDLPGDIINLCQSLSVQE 568
Query: 120 NLN-----------------------------------FWILNDIVWRKSNPMPNFRGRR 144
+ + + + IVW K++ +P + +
Sbjct: 569 HCPNCSTDEITVPLTKGESATSRSCVNCEFQSDSHSTAWNLRDIIVWDKNHALPYVKNGQ 628
Query: 145 FQNAHETLIWASP------------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
F+N E ++ + + + M + S S
Sbjct: 629 FRNVFEHILCFTKSTETEFQTDEVRITNPNEFKNWWVEYPERYNPRGMVPRNIWDFMSPS 688
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ + HP P L+SRI+ ++ GDI+ DPF GSG A A+ L R IGIE
Sbjct: 689 QGAFGQFDALDHPAPLPPGLVSRIVELASNKGDIVFDPFAGSGMVPATAEALNRVGIGIE 748
Query: 253 MKQDYID 259
+ +
Sbjct: 749 PNAKFCE 755
>gi|332715663|ref|YP_004443129.1| type III restriction-modification system StyLTI enzyme mod
[Agrobacterium sp. H13-3]
gi|325062348|gb|ADY66038.1| type III restriction-modification system StyLTI enzyme mod
[Agrobacterium sp. H13-3]
Length = 896
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 27/208 (12%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL----------YRPDHS 63
W +++I G+S+ V+ L V I+ DPPY ++ + PD+
Sbjct: 176 WTNRLILGDSLQVMNSLLEYEGMGGQVQTIYFDPPYGVKFGSNFQPFVRKNSVKHGPDNE 235
Query: 64 L------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ V A D+W+ +Y ++ R L + +LKP+G++ V S N+ + +
Sbjct: 236 MIREPEMVKAYRDTWELG--LHSYLSYMRDRLTLAKELLKPDGSIIVQISDDNLHHVREI 293
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + + + ++ L+W +PK + Y + +
Sbjct: 294 MDEVFTPENFIALIPFRKKTMPLGATYLEQMNDFLLWYGRNPKQAKFHQPYYEQEIQGD- 352
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ S KD H
Sbjct: 353 ---FHWKWYELPDSSRHSMTKDQVDNHS 377
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 12/188 (6%)
Query: 83 AFTRAWLLA---CRRVLKPNGT--LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F W R + + ++ +FR+ +M V
Sbjct: 352 DFHWKWYELPDSSRHSMTKDQVDNHSLLPDGARVFRLVSMWPPTFSESGVFNVEYDGKKW 411
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
P G + + + + + + + ++ + + G+
Sbjct: 412 PPAPGACYPSNPAGMKALVEAKRIEPEGKYLRYVLYLDDYKLAKMNASWTDTIGARG--- 468
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K + Q + ++ R L ++ PGD++LD GSGT+ VA++L R +I + +
Sbjct: 469 ----KSYVVQTSDEVVRRCLTMTSDPGDLVLDITCGSGTTAFVAEQLGRRWITCDTSRVP 524
Query: 258 IDIATKRI 265
I +A +R+
Sbjct: 525 IALARQRL 532
>gi|21673736|ref|NP_661801.1| type III restriction system methylase [Chlorobium tepidum TLS]
gi|21646860|gb|AAM72143.1| type III restriction system methylase [Chlorobium tepidum TLS]
Length = 669
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 17/154 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ +I+G+++ VL+ L + LI+ DPPYN + +
Sbjct: 99 NLMIEGDNLEVLKLLQKSYAGKIKLIYIDPPYNTGKDFVYPDDFKDNIRNYLELTGQVEG 158
Query: 69 -----TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+++ + L R++L P G + V H + + +L++L
Sbjct: 159 GRKISSNTEASGRFHTDWLNMMYPRLKIARQLLSPTGVIAVHIDEHELEALVIVLRDLFG 218
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
V P R HE+L+ +
Sbjct: 219 EENELGVTIWDKRNPKGDSRGIAYQHESLVLFAR 252
Score = 43.1 bits (100), Expect = 0.077, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ L G ++ V ++ N R F L + K P+P R
Sbjct: 308 ESMYDKLSETGRVYRLVSMAWPNKKRA----PADYFVPLKHPITGKDCPIPERGWRNPPA 363
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ L+ + +E+ + I GS+ K+
Sbjct: 364 TMKKLLEDGLIEFGPDEIMQPQRIYFLDEN-MYENVPSIVPFGGSDDELLKELSVPFEQP 422
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
KP +++ + +I++D F GSGT+G R +I +++
Sbjct: 423 KPVDFSVQVISWCSSKDEIVMDFFAGSGTTGHAVMAQNAADGGNRRYILVQL 474
>gi|213580225|ref|ZP_03362051.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-0664]
Length = 282
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G
Sbjct: 47 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDG-FVY 99
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 100 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 159
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 160 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 213
>gi|217033239|ref|ZP_03438675.1| hypothetical protein HPB128_189g1 [Helicobacter pylori B128]
gi|298737066|ref|YP_003729596.1| adenine DNA methyltransferase protein [Helicobacter pylori B8]
gi|216945027|gb|EEC23755.1| hypothetical protein HPB128_189g1 [Helicobacter pylori B128]
gi|298356260|emb|CBI67132.1| adenine DNA methyltransferase protein [Helicobacter pylori B8]
Length = 80
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ HPTQK AL+ +I+ T P DI+LDPF GSGT+G K L R FIGIE +++Y
Sbjct: 12 EKTKHPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKNLERKFIGIESEKEYFQ 71
Query: 260 IATKRIASV 268
A KR+
Sbjct: 72 TAQKRLNLF 80
>gi|323357538|ref|YP_004223934.1| DNA modification methylase [Microbacterium testaceum StLB037]
gi|323273909|dbj|BAJ74054.1| DNA modification methylase [Microbacterium testaceum StLB037]
Length = 464
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 74/240 (30%), Gaps = 34/240 (14%)
Query: 44 FADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
PPY + + D S+E+Y A R + G++W
Sbjct: 54 ITSPPYA-----------NLVNYGTPDQIGFGQSYESYLAECRTVFEDIFSWTRDEGSMW 102
Query: 104 VIGSYHN--------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
++ F + + + + IVWRK P R +N
Sbjct: 103 LVADTLMEPQGAGKPSRLVPLPFDLAAQATAAGWTLRDTIVWRKDRTRPWASKGRLRNGF 162
Query: 150 ETLIWASP------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE---RLRNKDG 200
E +++ + + +
Sbjct: 163 EYVLYFVKGSSFKYHVDRLRDIRGMRSWWVKYPERHNPWGMTPDNVWDIPIPVQGSWASN 222
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ H P L+ RI+ ST PGD++ DPF GSG AV++ R +G E+ ++ I
Sbjct: 223 DLRHACPFPPELVKRIVSLSTDPGDVVFDPFSGSGMVAAVSEAEGRRPLGTELNPEFCRI 282
>gi|294155855|ref|YP_003560239.1| adenine-specific DNA modification methyltransferase [Mycoplasma
crocodyli MP145]
gi|291600015|gb|ADE19511.1| adenine-specific DNA modification methyltransferase [Mycoplasma
crocodyli MP145]
Length = 323
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 56/309 (18%), Positives = 100/309 (32%), Gaps = 70/309 (22%)
Query: 31 VLEKLPAKSVDLIFADPPYN----LQLNGQLYRPDHSLVDAVTDSWDKFS---------- 76
L+++ KSVD I DPPY +QL+GQ + D + D +++F+
Sbjct: 15 FLDEIDEKSVDFICIDPPYGKINGMQLSGQKTKIDWDVNIDWKDLFNRFTRVLKPGGTIA 74
Query: 77 -------------SFEAYDAFTRAWLLA----------CRRVLKPNGTLWVIGSYHNIFR 113
Y + W+ N ++++G R
Sbjct: 75 VFGQNPTYSMMIIDNIKYYKYELIWVKNNAAQGFHADKMPLTFTENIAIFIVGENSKNKR 134
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY----- 168
+ N R + ++ S YT
Sbjct: 135 TFNNIAQKEEIDKNKHFTRWYAQSLYDFINIKRRKIHEILGHRKSEFFFCYTGKQFGLLS 194
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-------------------------- 202
+A+ + W I + + + +
Sbjct: 195 EAIYNELIEKFAIDKWEFFIPYTQLKEKWVNEKSATQYIKLDSFNYSKTLPNYIFEQKEI 254
Query: 203 --LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
LHPTQKP L+ R++ + G++ILD F GSG++G A L R F+G E+ + +
Sbjct: 255 VYLHPTQKPVKLMERLIKMYSNEGNVILDCFMGSGSTGVAALNLNRKFLGCELDEQHFQT 314
Query: 261 ATKRIASVQ 269
+ RI +++
Sbjct: 315 SKNRIENIK 323
>gi|293392005|ref|ZP_06636339.1| putative type III DNA modification methylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952539|gb|EFE02658.1| putative type III DNA modification methylase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 573
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 18/149 (12%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L A V +F DPPYN +D
Sbjct: 43 FDNRLIFGDNLLALKALEQEFAGKVKCVFIDPPYNTGSAFT--------------HYDDG 88
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ R L +R+L +G+LW+ + + +
Sbjct: 89 LEHSIWLGLMRDRLEIIKRLLSDDGSLWITIDDNEAHYLKVLCDEVFGRRNFVVNAIWVK 148
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKG 163
P + + H+ + + + +
Sbjct: 149 KSAPQNDAKWISDTHDHVFVYAKNKEIWK 177
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 8/185 (4%)
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+G + G ++ + + + RK P + LI +
Sbjct: 202 ESGEWYGRGPWYADNITVKTVSQTGIYEVVTPGGRKVLPPDGRAWAYSKERFWELIKDNR 261
Query: 158 SPKAKGYTFNYDALKAANE----DVQMRSDWLIPICSGSERLRNK----DGEKLHPTQKP 209
K + +E V +S W + R + + T KP
Sbjct: 262 IWFGKDGKNKPTVKRFLSEVGDKGVVPKSVWDYTEVGENRNARQEVMKFNSIDPFSTPKP 321
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E + RIL +T PGD++LD F GSGT+GAVA K+ R +I +E+ + R+ V
Sbjct: 322 ERFIERILTIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGEHCHTHIIPRLQKVI 381
Query: 270 PLGNI 274
+
Sbjct: 382 DGEDQ 386
>gi|260891078|ref|ZP_05902341.1| type III restriction-modification system, Mod subunit [Leptotrichia
hofstadii F0254]
gi|260859105|gb|EEX73605.1| type III restriction-modification system, Mod subunit [Leptotrichia
hofstadii F0254]
Length = 669
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 57/169 (33%), Gaps = 18/169 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLN------GQLYRPD 61
++ + ++ I+G+++ VL+ L S+ +I+ DPPYN + + +
Sbjct: 82 KDSKNADTTENIYIEGDNLEVLKLLRQNYYNSIKMIYIDPPYNTGNDFVYNDTFKKDGDE 141
Query: 62 HSLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ D K + L R +L +G +++ +
Sbjct: 142 SDKEEGYKDETGKRLEKNPRSTNRYHAKWLDMMYPRLKLARDLLTDDGVIFISIDDNEQA 201
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + + + + N +G + + L+ + + +
Sbjct: 202 NLKRLCDEIFGEENFVGEACRVSKKANNQGDFWAPNFDYLLTYAKNINS 250
>gi|160936294|ref|ZP_02083664.1| hypothetical protein CLOBOL_01187 [Clostridium bolteae ATCC
BAA-613]
gi|158440763|gb|EDP18494.1| hypothetical protein CLOBOL_01187 [Clostridium bolteae ATCC
BAA-613]
Length = 675
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 18/172 (10%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
E ++ I+G+++ VL+ L + +I+ DPPYN + +
Sbjct: 88 REESVDFDNTENLYIEGDNLEVLKLLQETYLGKIKMIYIDPPYNTGHDFVYEDDFSQSSN 147
Query: 67 AVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ +F + L + +L +G +++ +
Sbjct: 148 EYLSNSGQFDDAGNRLVANTESNGRFHTDWLNMMYPRLRLAKDLLTEDGVIFISIDDNEQ 207
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ + + ++ Q HE ++ S +
Sbjct: 208 CNLVKLCDEVFGAENCIGPIIQNKQNAKNDTVNIQKNHEFILVYRKSSNSIN 259
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILV 218
K T + A+ RS G+ L G+ + K ++ ++
Sbjct: 398 KEDIVTVDGKMQYTASSMTNSRSILDFSTNDGTNTLNTVLGKNAVFSNPKNLEMIKYLIQ 457
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD 256
I+LD F GS T+ + R FI +++ ++
Sbjct: 458 LVADKSFIVLDFFSGSATTAHAVMQANAEDGGKRRFIMVQISEE 501
>gi|83591581|ref|YP_425333.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
gi|83574495|gb|ABC21046.1| DNA methylase N-4/N-6 [Rhodospirillum rubrum ATCC 11170]
Length = 939
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 24/174 (13%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
W +++I G+S+SV+ L V I+ DPPY ++ N S
Sbjct: 127 NWTNRMILGDSLSVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNKD 186
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
V A D+W Y ++ R L R +L +G+++V N+ R+
Sbjct: 187 HITREPEQVRAFRDTWR--DGIHTYLSYLRDRLTVARDLLTDSGSIFVQIGDENVHRVRM 244
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
++ + F N I + G N + ++W S S + +
Sbjct: 245 LMDEV-FGDENFISQISTKTSGGSTGEYISNVVDFILWYSKSRSYIKFRKLNKS 297
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 4/136 (2%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ S P+ R R N + T N + +D L
Sbjct: 364 IISGSEIKPSLRVRWKTNQTGMDRLLK--AERLELTGNSISYVRFIDD--FSGIPLSNSW 419
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
++++ K++ Q P ++ R ++ ++ PGD++LDP GSG++ VA++ R +I
Sbjct: 420 DDIGGIQSRLDPKVYVVQTPTTVIQRCILMASDPGDLVLDPTCGSGSTAFVAEQWGRRWI 479
Query: 250 GIEMKQDYIDIATKRI 265
I+ + + +A RI
Sbjct: 480 TIDTSRVSLALARARI 495
>gi|71897935|ref|ZP_00680140.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
fastidiosa Ann-1]
gi|71732179|gb|EAO34234.1| Site-specific DNA-methyltransferase (adenine-specific) [Xylella
fastidiosa Ann-1]
Length = 534
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 11/183 (6%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W + II+G++ L L ++ I+ DPPYN +Y D D ++
Sbjct: 61 WPNLIIEGDNFDALRALRMTHRGAIRCIYIDPPYNTGNRDFVY------NDCFIDKTHRY 114
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ F L + +L +G ++V + +FR+G ++ + + ++
Sbjct: 115 R-HSLWLEFIYRRLQLAKELLADDGVIFVSIDDNELFRLGMLMDRVFGEQNFVANFIWNH 173
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG-YTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ AH + + + DA K N D R W+
Sbjct: 174 RKSSQNDTDVSLAHNYTLCYARTRDRFSLNPLPVDADKFNNTDGDQRGPWVADPFDAPNI 233
Query: 195 LRN 197
+N
Sbjct: 234 RKN 236
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------ 245
E + DGEK+ T KP +L+ RIL +T +LD F GSGT+ KL
Sbjct: 315 KELMAIFDGEKMFNTPKPVSLIERILSVATDKEAWVLDFFAGSGTTAHAVAKLNAEDGGH 374
Query: 246 RSFIGIEM 253
R FI I
Sbjct: 375 RRFILISN 382
>gi|289168090|ref|YP_003446359.1| adenine-specific DNA methylase [Streptococcus mitis B6]
gi|288907657|emb|CBJ22494.1| adenine-specific DNA methylase [Streptococcus mitis B6]
Length = 712
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 23/190 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
++ I G+++ VL+ L +D+I+ DPPYN + + + +
Sbjct: 154 DFENSENVFITGDNLEVLKILQESYLGKIDMIYIDPPYNTGKDFVYSDKFQKTDEELKED 213
Query: 72 WDKFSS------------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + L R +LK +G +++ +
Sbjct: 214 MELLDEEGRQVVGLTKNEKTSARYHSDWLNMMYPRLRLARNLLKDSGVIFISIDDNEQAN 273
Query: 114 IGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ + + R +N N +HE + S + +
Sbjct: 274 LKAICDEIFGEENFVASITRNTNSSKNQS-LYISVSHEYCLVYSKDEIELAKKHSENKWS 332
Query: 173 AANEDVQMRS 182
++
Sbjct: 333 VDKNNINEYK 342
>gi|120536948|ref|YP_957006.1| DNA methylase N-4/N-6 domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120326782|gb|ABM21091.1| DNA methylase N-4/N-6 domain protein [Marinobacter aquaeolei VT8]
Length = 657
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 11/188 (5%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ II+G++ L L + + ++ DPPYN D + D W
Sbjct: 72 NLIIEGDNFDSLRLLRSTHRGRIRVVMIDPPYNTGNGSDWVYNDSFVKK--DDRWR---- 125
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-NDIVWRKSNP 136
+ F LL R +L P+G + V + N ++ M+ + + VWR +
Sbjct: 126 HSKWLEFMYQRLLIARDLLTPDGVIMVCINDENRSKLELMMDEVMPGLRVGSFVWRVRSG 185
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ +G HE ++ + + N D R W + +
Sbjct: 186 GNDTKGALLSMNHEHVLVYGNPAFSFKGDERDQSSYT-NPDDDPRGAWQNDNLVKAHNAK 244
Query: 197 NKDGEKLH 204
+ H
Sbjct: 245 QRPEAYYH 252
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------L 244
G+ + K P KP +L+ +L + +P DI LD F GSGT+G +
Sbjct: 418 GTNNYKQILNNKDFPYPKPPSLMRELLRQAMRPDDIALDFFAGSGTTGQAVLELNAEDDG 477
Query: 245 RRSFIGIEM 253
R FI
Sbjct: 478 NRRFILCSN 486
>gi|196248490|ref|ZP_03147191.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. G11MC16]
gi|196212215|gb|EDY06973.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. G11MC16]
Length = 474
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 58/194 (29%), Gaps = 5/194 (2%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFS 76
+ I+G+++ L+ L SV +I+ DPPYN A + ++
Sbjct: 87 NWYIEGDNLEALKLLRASHEGSVQMIYIDPPYNTGKAFTYKDNWRKRKRAASHIEQEEAR 146
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSN 135
+ L + +L G +++ + M +
Sbjct: 147 VHAGWLNMMYPRLWVAKALLAETGAIFISIDDTEQANLKKMCDEIFGERNFVATFIWQRA 206
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P + H+ ++ + + + +A +D P SG +
Sbjct: 207 FSPVNMNKFASRNHDFILCYAKNIDRLAWYGLPRDSEANGRYANPDNDPRGPWMSGDLSV 266
Query: 196 RNKDGEKLHPTQKP 209
EK++ P
Sbjct: 267 GPPIPEKIYDIVTP 280
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 178 VQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + + L+ DG + KP L+ R++ +TK D+ILD F GS T
Sbjct: 336 TIWTHDEVSHSQEAKKELKELFDGVAVMDYPKPVKLIQRMVALTTKDDDVILDFFSGSAT 395
Query: 237 SGAVAKKLR------RSFIGIEMKQDYIDIA 261
+ + RSFI +++ + + +
Sbjct: 396 TAHAVMQQNAEDGGQRSFIMVQLPERMVKTS 426
>gi|15669175|ref|NP_247980.1| type II R/M system modification methyltransferase
[Methanocaldococcus jannaschii DSM 2661]
gi|2500155|sp|Q58392|MTM1_METJA RecName: Full=Modification methylase MjaI; Short=M.MjaI; AltName:
Full=N-4 cytosine-specific methyltransferase MjaI
gi|1591647|gb|AAB98988.1| modification methylase, type II R/M system 1 [Methanocaldococcus
jannaschii DSM 2661]
Length = 303
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 60/295 (20%), Positives = 107/295 (36%), Gaps = 34/295 (11%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPY-------------NLQLNGQLYRPDHSLVDA 67
KII G++ ++++ +SV L+ PPY NL++N + ++ +
Sbjct: 10 HKIIFGDARK-MDEIEDESVHLVVTSPPYPMIEMWDELFKMLNLEINKRWMEMENEEDEE 68
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS------------YHNIFRIG 115
+ + RVL P G + + N +I
Sbjct: 69 KKEKL-IMQIYNLMHQTLYPVWEEVYRVLVPGGIACINIGDATRKINGVFRLFPNHSKII 127
Query: 116 TMLQNLNFWILNDIVWRKSNPMPN---FRGRRFQNAHETLIW----ASPSPKAKGYTFNY 168
+ + F L I+W+K + PN G NA+ TL K + +
Sbjct: 128 ENFEKIGFVTLPYILWKKPSNKPNAFLGSGFLPPNAYVTLDVEYILIFRKGKPRKFKPKD 187
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
A+ + R W I + + PE + R++ + GD +L
Sbjct: 188 PLRYASAYTKEERDRWFSQIWEIVGDKQTHPKIERRTASFPEEIPRRLIRMFSIIGDTVL 247
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
DPF G+GT+ A +L+R+ IG E+ + I ++I Q ++ V R
Sbjct: 248 DPFLGTGTTVKAAIELKRNSIGYEIDKSLKPIIEEKIGIKQKRIGMDFNVEFINR 302
>gi|323179216|gb|EFZ64786.1| DNA methylase family protein [Escherichia coli 1180]
Length = 352
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRECFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|213417795|ref|ZP_03350907.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 103
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 14/97 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
A+ + C RVLK +GT++++ S N+ I
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKC 98
>gi|189461561|ref|ZP_03010346.1| hypothetical protein BACCOP_02220 [Bacteroides coprocola DSM 17136]
gi|189431671|gb|EDV00656.1| hypothetical protein BACCOP_02220 [Bacteroides coprocola DSM 17136]
Length = 281
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 18/178 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ E+ ++ I+G+++ VL+ L V +I+ DPPYN +
Sbjct: 89 PVVEDSVDWDNTQNLYIEGDNLEVLKLLQKSYMGKVKMIYIDPPYNTGNDFVYDDDFAVS 148
Query: 65 VDAVT---------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
D ++ + + L+ + +L +G++++ H
Sbjct: 149 QDDYDLFSGNVDELGNRYRKNTESNGRFHSDWCSMMYPRLMVAKSLLSDSGSIFLTLDDH 208
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
I ++ + N AH ++ S + + N
Sbjct: 209 EIVNGRKLMDEIFGEKSFISTVIWENFYGRSNAAAISLAHNYILIYSKAGEEWKNIRN 266
>gi|261416885|ref|YP_003250568.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261373341|gb|ACX76086.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302327028|gb|ADL26229.1| putative type III restriction-modification system, Mod subunit
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 520
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/200 (12%), Positives = 65/200 (32%), Gaps = 11/200 (5%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD-------AVTD 70
+KII G+++ L+ L + I+ DPPYN +Y + + V
Sbjct: 37 NKIIHGDNLEALKSLLPEYEGRIKCIYIDPPYNTGNENWVYNDNVNSPKIKKWLGQVVGK 96
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDI 129
+ + + + L +++L +G +++ + + +
Sbjct: 97 ESEDLTRHDKWLCMMYPRLKLLQKLLSNDGAIFISIDDNEQANLKLVCDEIFGAGNFVGD 156
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ + + HE ++ S + + + +A +D P
Sbjct: 157 FIWEKKKVVQNDSKFSSVNHEYVLSYRKSEQLQVFNLLPRTEEANARYANPDNDPNGPWT 216
Query: 190 SGSERLRNKDGEKLHPTQKP 209
S + ++ + ++ P
Sbjct: 217 SVALTAKSGSADNIYDYTFP 236
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LR 245
E+L+ G+ + T K L+ +LV +T IILD F GSGT+
Sbjct: 306 KEQLKRTLGKNVFDTPKSIKLIEMLLVLATDKSSIILDSFAGSGTTAHAVLNLNKQDGGN 365
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R FI +EM+ I +R+
Sbjct: 366 RKFILVEMEDYAETITAERVRR 387
>gi|147921746|ref|YP_684432.1| putative type III restriction-modification system, methylation
subunit [uncultured methanogenic archaeon RC-I]
gi|110619828|emb|CAJ35106.1| putative type III restriction-modification system, methylation
subunit [uncultured methanogenic archaeon RC-I]
Length = 834
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 24/169 (14%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
W +++I G+S+ V+ L V +I+ DPPY ++ +
Sbjct: 119 NWSNRLIAGDSLLVMNSLLEKEGMAGKVQMIYFDPPYGIKYGSNFQPFVNKRDVKDGKDE 178
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
V A D+W+ +Y + R LL + +L +G+++V S N+ +
Sbjct: 179 DLTSEPEMVKAFRDTWELG--IHSYLTYLRDRLLLAKELLSDSGSIFVQISDENLHHVRE 236
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+L + F N I + ++W + K +
Sbjct: 237 ILDEI-FGYNNFINIITFQKTGGISSNLLGCTIDFILWYAKDIKNVKFR 284
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+L+ Q ++ R L+ +T PGDI+LDP GSGT+ VA++ R +I + + I +A
Sbjct: 413 RLYVVQTSHKVIERCLLMATDPGDIVLDPTCGSGTTAYVAEQWGRRWITCDTSRVAITLA 472
Query: 262 TKRIAS------VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT 315
+R+ + + +T P + + + L + +
Sbjct: 473 KQRLMTAIFDYYELAYPEEGVGSGFRYKTVPHITLKS-IANNEPPAQETLYDQPLVDKSK 531
Query: 316 VCADG 320
+ G
Sbjct: 532 LRVTG 536
>gi|171316876|ref|ZP_02906085.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria MEX-5]
gi|171097957|gb|EDT42775.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria MEX-5]
Length = 668
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 94 WDDTRHLLIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 153
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 154 GQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 213
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 214 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 253
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 267 KRNAQRMLDAAHDAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVSM 326
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N F L V K MP R + LI T
Sbjct: 327 AWPN----KKKAPEEYFTPLIHPVTGKPCAMPARGWRNPPATMQALIERGQIEFGPDETT 382
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 383 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDQPKPVDFAAAVIGWCTRGDDI 441
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 442 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 474
>gi|90425626|ref|YP_533996.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
gi|90107640|gb|ABD89677.1| DNA methylase N-4/N-6 [Rhodopseudomonas palustris BisB18]
Length = 544
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 84/233 (36%), Gaps = 17/233 (7%)
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
N G+ + + DK++ + Y ++ ++ + P+G + +
Sbjct: 171 NDAKQGRTQYGNVRDIIFFYTKSDKWNWNQQYTPYSEEYVRDFYKFSDPDGRRYRLSD-- 228
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
R + + LI + + T +
Sbjct: 229 ----------ITGPGGAAKGNPSYEIFGVTRYWRYSKLRMQQLINEGKVIQTRPGTVPAE 278
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
M L S L ++ + TQKP ALL RI+ +S+ GD++LD
Sbjct: 279 KRYLDE----MPGVALQNDWSDI-GLPSRKENLGYGTQKPVALLERIISASSNEGDVVLD 333
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
PF G GT+ A+KL R++IGI++ I++ +R+ P E+ +
Sbjct: 334 PFCGCGTTVHAAQKLNRNWIGIDVTHLAINLIKRRLIDAFPHAQFEIHGVPKD 386
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 42/207 (20%)
Query: 21 DKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQ--LYRPDH----SLVDAVTDSWD 73
+ + G+++ +L + ++SVDL++ DPP+N + + P + ++A D+W
Sbjct: 14 NHLYYGDNLDILGGSIASESVDLVYLDPPFNSNASYNVLFHAPGGESSPAQIEAFDDTWH 73
Query: 74 -------------------------------KFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
K + AY A LL RVLKP G+L
Sbjct: 74 WSPTAERAFDEVIQSGNSDVSEMLRAMRSFLKDNDMMAYLAMMAVRLLELHRVLKPTGSL 133
Query: 103 WVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRG---RRFQNAHETLIWASPS 158
++ + +L + + N ++ N + + + + S
Sbjct: 134 YLHCDPTASHYLKILLDAVFGKRQFKTEISWRRQSAHNDAKQGRTQYGNVRDIIFFYTKS 193
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWL 185
K + D SD
Sbjct: 194 DKWNWNQQYTPYSEEYVRDFYKFSDPD 220
>gi|323970431|gb|EGB65693.1| DNA methylase [Escherichia coli TA007]
Length = 551
Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 25/183 (13%)
Query: 1 MSQKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ K L+ +++ N E K+ +IKG+++ VL+ + + V +I+ DPPYN +
Sbjct: 80 LPPKTLLSEDKDHNQREENKNSQNLLIKGDNLEVLKHMVNAYSEKVKMIYIDPPYNTGKD 139
Query: 55 GQLYRPDH-------SLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKP 98
G Y D S + + K SS A+ F L R +L+
Sbjct: 140 GFAYNDDRKFTPEQLSDLAGIDLDEAKRILEFTTNGSSSHSAWLTFIYPRLYIARELLRE 199
Query: 99 NGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+G +++ + + ++ T+ + + N +G N HE ++ +
Sbjct: 200 DGVIFISIDENELNQLKTICDEIFGEANFIENIVWNKRIPKNDKG--IGNIHEYILAYAK 257
Query: 158 SPK 160
+ +
Sbjct: 258 NNE 260
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 39/219 (17%), Positives = 62/219 (28%), Gaps = 18/219 (8%)
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDA--FTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + + +D KF S YD L R W
Sbjct: 280 EKLKKEKVPLDKAEQQLKKFYSSNGYDRGITLYNCLNEDYRPWGKINMSWPNADSFGPTY 339
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
N + D WR N +R + + G +
Sbjct: 340 EVLHPLTNNPVKIPDRGWRWKEGTFNHIAKRIDGKYADIKKLHDGSVICGGIWFASTENT 399
Query: 174 AN---------EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
E+ +RS G E G+ KP +L+ + S
Sbjct: 400 QPSSVKFLDEVEEFLLRSIISTKSDGGVEVENLFGGKGYFSYPKPTSLIKTLFGSVKTED 459
Query: 225 -DIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD 256
DI LD F GSGT+ +L R+FI +++ ++
Sbjct: 460 KDIYLDFFAGSGTTAHGILELNIEDGRKRNFICVQLDEE 498
>gi|227548168|ref|ZP_03978217.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Corynebacterium lipophiloflavum DSM 44291]
gi|227079729|gb|EEI17692.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Corynebacterium lipophiloflavum DSM 44291]
Length = 215
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 18 EWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS-----LVDAVT 69
E ++ I G+++ L+ L A V I+ DPPYN +G +Y D S LV+ V
Sbjct: 93 ESENLYIVGDNLDALKHLLGSYAGKVKCIYIDPPYNTGSDGFVYIDDFSFTAKDLVEKVG 152
Query: 70 DSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
D+ S A+ F L + +L +G +++ + + +
Sbjct: 153 LDEDEAERVIALQGKSSHSAWLTFMYPRLELAKELLADDGVIFISIDDNEQANLRNLC 210
>gi|325686055|gb|EGD28111.1| type III restriction-modification system methyltransferase
[Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 627
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/226 (12%), Positives = 63/226 (27%), Gaps = 19/226 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
+K + + ++ I+G+++ L+ L V +I+ DPPYN +
Sbjct: 87 EKEKSIGRDGTPGGVDSENIYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYED 146
Query: 60 PDHSLVDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWV 104
D D+ + + L R L +G +++
Sbjct: 147 DFAQSSDEYADNSGQTDEEGNRLVQNSESNGRFHTDWLNMIYPRLRLARDFLTDDGVIFI 206
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ + + V + P + F +H+ ++
Sbjct: 207 SIDDNEQENLKKVCDEIFGSNNFLAQVVWERAYAPINLKKNFSVSHDYILVYGKDSSIIQ 266
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
++ N +D P S + ++P P
Sbjct: 267 TNGIARTDESDNRYQNPDNDPRGPWKSSDLSVGPAVKANIYPITTP 312
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ G+K KP L+ R + T+ I++D F GS T+ +
Sbjct: 388 KLMGGKKYFDYPKPVPLIQRCIQLYTEEDSIVMDFFAGSATTAHAVMQQN 437
>gi|300361147|ref|ZP_07057324.1| site-specific DNA-methyltransferase (adenine-specific)
[Lactobacillus gasseri JV-V03]
gi|300353766|gb|EFJ69637.1| site-specific DNA-methyltransferase (adenine-specific)
[Lactobacillus gasseri JV-V03]
Length = 659
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 24/223 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+N K+ G+++ VL L + VD+I+ DPPYN + PD+
Sbjct: 87 DEEQNNGEGRNSKNLFFTGDNLEVLRHLQSAYANKVDVIYIDPPYNTGQD-DFAYPDN-- 143
Query: 65 VDAVTDSWDKF-----------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ D + SS A+ F L + +LK +G +++
Sbjct: 144 FEYTDDQLENMFGLDENQLARLKSIQGKSSHSAWLTFMYPRLQLSKHLLKQDGVIFISID 203
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + + V + P + F +H+ ++
Sbjct: 204 DNEDGNLKEICDEIFGESNFLAQVVWERAYAPINLKKNFSPSHDYMLVYGRDANIIETNG 263
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ ++ + +D P S + E ++P P
Sbjct: 264 ISRSDESDSRYNNPDNDPRGPWSSSDISVGPAIQENIYPVTTP 306
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEM 253
G+K KP L+ R + + +I+D F GS T+ + R FI +++
Sbjct: 386 GKKYFAYPKPVKLIQRAIQLYSNENSVIMDFFAGSATTAEAVMQQNIEDGGNRKFIMVQL 445
Query: 254 KQDYIDI 260
+ +
Sbjct: 446 PEKTYET 452
>gi|256372167|ref|YP_003109991.1| DNA methylase N-4/N-6 domain protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008751|gb|ACU54318.1| DNA methylase N-4/N-6 domain protein [Acidimicrobium ferrooxidans
DSM 10331]
Length = 651
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 99 NLVIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDSIKNYLELTGQVEG 158
Query: 69 -----TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LN 122
+++ + L R +L+ +G L++ I + T+
Sbjct: 159 GRKISSNTEASGRFHTDWLNMMYPRLKLARNLLREDGVLFISIDDGEIGHLRTLCDEVFG 218
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
++ R++ F +R + + ++
Sbjct: 219 AENFCGVIKRRAARKTAFLRKRMTDMCDYVVAYVR 253
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAV 240
D GSE L+ + KP L+ + ++ K +++LD F GSGT+G
Sbjct: 371 DDNTCYNEKGSEELQQLFEATVFNNPKPRGLIEYLASAAGVKEKELVLDFFAGSGTTGHA 430
Query: 241 AKKL------RRSFIGIEM 253
R +I +++
Sbjct: 431 VMAQNAADGGNRRYILVQL 449
>gi|237751142|ref|ZP_04581622.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
gi|229373587|gb|EEO23978.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
Length = 221
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 33/239 (13%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA----VTDSWDKF 75
+ + + + ++ L + SVDL F DP Y L+ Y + V S ++
Sbjct: 9 LNTRLNIDGLELMGSLESCSVDLCFFDPQYRGVLDKMRYGNEGKRQKGRSTLVQMSEEQI 68
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
SF + RVLKP+ L + ++ + D++
Sbjct: 69 QSF----------ICEIDRVLKPSCYLMLWIDKFHLCEGVKAWVEQTSLQVVDLITWDKL 118
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
M G R + E L+ +P T+ ++ +
Sbjct: 119 KMG--MGYRTRRQSEYLLVLQKAPVRAKNTWRLHNIRDVWSEKIPN-------------- 162
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
D K+HP KP+ L ++ S T GD++LDP GS + A++L R FIG +
Sbjct: 163 ---DELKIHPHSKPKGLQKALIESCTNKGDLVLDPASGSFSVFECARELGREFIGTNLS 218
>gi|134294161|ref|YP_001117896.1| adenine-specific DNA-methyltransferase [Burkholderia vietnamiensis
G4]
gi|134137318|gb|ABO53061.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia vietnamiensis G4]
Length = 672
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 98 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYADDFSDSIRHYLAMT 157
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ V T++ + L +L G + V H + + ML
Sbjct: 158 GQTDAGVKRNTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 218 REIFGEENELGVAVWDKRNPKGDARGIAYQHESLVLFARN 257
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 271 KRNAQRMLDAAHDAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVSM 330
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + LI T
Sbjct: 331 AWPN----KKKAPDEYFTPLIHPVTGKPCAMPARGWRNPPATMQALIERGQIEFGPDETT 386
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 387 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKALGIPFDQPKPVDFAAAVIGWCTRGDDI 445
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 446 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 478
>gi|300869254|ref|ZP_07113847.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
gi|300332745|emb|CBN59045.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
Length = 450
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 21 DKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+K+I G+++ VL L V L++ DPPY N DH A D F
Sbjct: 56 NKLIYGDNLRVLRALLDDANIAGKVSLVYIDPPYATGANFASRNLDH----AYND----F 107
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKS 134
Y + R L+ R +L +G+++V + F + ++ + + RK
Sbjct: 108 REGAEYLEYIRCRLILMRELLADDGSIYVHLDENMAFPVKILMDEIFGIKNFRNWITRKK 167
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
N+ R++ N + +++ S + Y +N
Sbjct: 168 CNPKNYTRRQYGNVSDYILFYSK---TEQYIWNQ 198
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 6/169 (3%)
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ P + ++ A L+ A T N + + I
Sbjct: 242 WRGMMPPPGKHWQYTPATLDLMDA-RGEIYWSSTGNPRRKVYLDNSK---GIPIQDIWLD 297
Query: 192 SERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+ N++ + +PT+K LL R++++S+ PGD++LD F GSGT+ AVA+ L R +I
Sbjct: 298 FKDAHNQNIKITGYPTEKNPELLKRMIIASSNPGDLVLDAFAGSGTTAAVAEDLGRQWIA 357
Query: 251 IEMKQDYIDIATKRI-ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
I+ + ++ R+ +P+G+ + N +++ GL
Sbjct: 358 IDNAKLALETMVWRLAKGTEPMGDFLKGNDDQPKQISLFDENRVLKSGL 406
>gi|259502624|ref|ZP_05745526.1| type III restriction-modification system StyLTI enzyme mod
[Lactobacillus antri DSM 16041]
gi|259169439|gb|EEW53934.1| type III restriction-modification system StyLTI enzyme mod
[Lactobacillus antri DSM 16041]
Length = 649
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 67/199 (33%), Gaps = 18/199 (9%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY-----R 59
+N K+ G+++ VL L A +D+I+ DPPYN +G +Y
Sbjct: 86 DEEQNNGEGKNSKNLFFTGDNLEVLRHLQTSYANKIDVIYIDPPYNTGSDGFVYPDSFEY 145
Query: 60 PDHSLVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D L D + ++ S A+ F L+ +R+L GT+++ +
Sbjct: 146 SDDQLKDMFGITDEQVERMKSIQGKASHSAWLTFMYPRLVLAKRILSDQGTIFISIDDNE 205
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + + + S + N + TL+++ N+
Sbjct: 206 LSNLKEICDEIFGEDNFVSNIIWNSRKSVSNDAIISLNHNSTLVYSKNFKIFNDNKGNFK 265
Query: 170 ALKAANEDVQMRSDWLIPI 188
+ N +D
Sbjct: 266 LPLSKNGFSNPDNDLRGVW 284
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLR---- 245
G++ +++ EK+ T KP + + +I+ ST G + ILD F GS T+ +L
Sbjct: 374 GTKEIQSLFNEKIFSTPKPTSFIKKIVALSTSSGYETILDFFAGSSTTADAVMQLNAEDG 433
Query: 246 --RSFIGIEM 253
R FI +++
Sbjct: 434 GHRKFIMVQL 443
>gi|329734469|gb|EGG70781.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
VCU028]
Length = 648
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 20/170 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY----RP 60
I+ +++ + ++ G+++ VL L SVD I+ DPPYN +G LY
Sbjct: 86 VIHNKKSANKDSENLYFTGDNLEVLRHLQQNYKDSVDFIYIDPPYNTGSDGFLYPDTFEY 145
Query: 61 DHSL----VDAVTDSWDKFS------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D S + KF S A+ F L + +LK +G ++V +
Sbjct: 146 DDSKLMSMFSFSEEEMKKFKNIQGKSSHSAWLTFMYPRLYLAKNLLKEDGLIYVSIDENE 205
Query: 111 IFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ +L ++ + + +W + N +NA E ++ +
Sbjct: 206 HANLKLILDDIFGEQGFIENYIWESNFRPDNSSQIYRKNA-ENILLYVKN 254
Score = 43.1 bits (100), Expect = 0.073, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ Y+ + A N+ + + + SE ++ + +++ KP +L+ +
Sbjct: 352 KNESFVPYSEKKETTSAPNK-IIPKDYVSDVLSGRSELMQIFNNQQVFNYPKPTSLIEYL 410
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM-KQDYID 259
L + K ++LD F GS T+ KL R FI +++ ++ YI+
Sbjct: 411 LKTIGKKDAVVLDFFSGSATTADAVLKLNNKDEGSRKFILVQLPEEIYIE 460
>gi|299142959|ref|ZP_07036085.1| type III restriction-modification system, methylase subunit
[Prevotella oris C735]
gi|298575575|gb|EFI47455.1| type III restriction-modification system, methylase subunit
[Prevotella oris C735]
Length = 650
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 19/167 (11%)
Query: 13 QNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ +W ++ I+G+++ VL+ + V +I+ DPPYN + +
Sbjct: 91 KEESVDWDTTQNLYIEGDNLEVLKLIQNSYLGKVKMIYIDPPYNTGNDFVYHDHYDESYA 150
Query: 67 AVTDS---------WDKFSS----FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ W S + + A L+ R +L G +++ H +
Sbjct: 151 DYDEHNKFEDGIRFWRNTDSNGRFHSDWCSMIYARLMIARSLLSEEGVIFISIDDHEVDD 210
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + + + N +G + + L+ + + +
Sbjct: 211 LKKICNEVFGESNFVGCAGRITKKSNNKGDFWAPNFDYLLTYTKNRE 257
>gi|78064690|ref|YP_367459.1| site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia sp. 383]
gi|77965435|gb|ABB06815.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia sp. 383]
Length = 672
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 98 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 157
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 158 GQTQGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 218 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 257
Score = 43.9 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L G ++ V
Sbjct: 271 KRNAQRMLDAAHDAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSEEGRVYRLVSM 330
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N F L V K MP R + LI +
Sbjct: 331 AWPN----KKKAPEEYFTPLIHPVTGKPCAMPARGWRNPPATMQALIERGQIEFGADEST 386
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 387 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDI 445
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R ++ +++
Sbjct: 446 VLDCFAGSGSTGHAVMQVNATDGGARRYVLVQL 478
>gi|213619415|ref|ZP_03373241.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-2068]
Length = 339
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 2 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY- 54
Query: 60 PDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
PDH + D+ S+ A+ +F L R++LK G +++
Sbjct: 55 PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFI 114
Query: 105 IGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + M+ V K + E ++ +
Sbjct: 115 SIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAK 168
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 246 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 304
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
ALL +I+ + ++LD F GSGT+ L
Sbjct: 305 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALN 339
>gi|218234182|ref|YP_002365705.1| adenine specific DNA methylase [Bacillus cereus B4264]
gi|218162139|gb|ACK62131.1| adenine specific DNA methylase [Bacillus cereus B4264]
Length = 531
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/272 (14%), Positives = 78/272 (28%), Gaps = 26/272 (9%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
++ K S N ++KII+G+++ L+ L + I+ DPPYN +
Sbjct: 24 LNHKYSFNEGGLSNDEGSSENKIIRGDNLEALKALLPQYEGKIKCIYIDPPYNTGNEKWI 83
Query: 58 YRPDHSL-------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYH 109
Y + + D V + S + + L ++L G +++ +
Sbjct: 84 YNDNVNHPKIKKWLGDVVGKEGEDLSRHDKWLCMIYPRLKLLNKLLDTKKGVIFISIDEN 143
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + + + + HE ++ + K T N
Sbjct: 144 EYANLKLICNEIFGSNCYVATIAWQKRYSRENRQAIGDVHEYILIYAKDKKYFKETRNLI 203
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ V + G R + H T T PG +
Sbjct: 204 EMDEKQSKVYKNPNNDPK---GRWRPIPMTAQAGHAT-------KDQFYPITAPGGKVFY 253
Query: 230 PFFGSG-----TSGAVAKKLRRSFIGIEMKQD 256
P G ++ K R + G
Sbjct: 254 PPAGRCWSIVESTFNELLKQGRIYFGKNNNSQ 285
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 44/146 (30%), Gaps = 18/146 (12%)
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
GR + T + N ++ E
Sbjct: 255 PAGRCWSIVESTFNELLKQGRIYFGKNNNSQPNTIRYLSEVDGVVPWTWWPHEEVGNTDS 314
Query: 200 GEKL----------HPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKL--- 244
+K T KP L+ RI+ +T DIILD F G+GT+ +
Sbjct: 315 AKKEIYSILGKGTQFDTPKPSQLIERIIRIATSKDENDIILDSFSGTGTTAHAVLNINKK 374
Query: 245 ---RRSFIGIEMKQDYIDIATKRIAS 267
R FI +EM+ I +R+
Sbjct: 375 DGGNRKFILVEMEDYAETITAERVKR 400
>gi|218694475|ref|YP_002402142.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia coli 55989]
gi|218351207|emb|CAU96911.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia coli 55989]
Length = 349
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|163849167|ref|YP_001637211.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222527144|ref|YP_002571615.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163670456|gb|ABY36822.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222451023|gb|ACM55289.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
Length = 314
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 38/277 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH--SLVDAVTDSWDKFSSFEA 80
+I + L ++P S+ I DPPY + + Y P+ + W SF+
Sbjct: 24 VIHADCFEWLSEVPGDSIHAIVTDPPYGV----KEYDPEQLEKRSNGNGGIWRIPPSFDG 79
Query: 81 YDA-------------------FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + W RVL+P G +++ + + T +
Sbjct: 80 HTRSPLPRFTALNPKERERIQHYFYEWARLALRVLRPGGHVFLASNVFLSQIVFTAIVQA 139
Query: 122 NFWILNDIVWRKSNPMPNFR-----------GRRFQNAHETLIWASPSPKAKGYTFNYDA 170
F +V R + +E
Sbjct: 140 GFEFRGQVVRLVRTLRGGDRPKNAEEEFPDVCSMPRGCYEPWGIFRKPIPDGMTVSECLR 199
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPG-DIIL 228
L + + SER K+ HP+ KP++ L +I+ +S G ++L
Sbjct: 200 LFQTGGLRRKQDGNPFEDVIESERTPQKERAIANHPSLKPQSFLRQIVYASLPLGEGVVL 259
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
DPF GSG++ A A+ + + IGIE ++Y ++ + I
Sbjct: 260 DPFMGSGSTIAAAEAIGYAAIGIEKYREYYLMSLQSI 296
>gi|170770051|ref|ZP_02904504.1| DNA methylase [Escherichia albertii TW07627]
gi|256023044|ref|ZP_05436909.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia sp. 4_1_40B]
gi|170121117|gb|EDS90048.1| DNA methylase [Escherichia albertii TW07627]
gi|284921102|emb|CBG34167.1| phage DNA adenine-methylase [Escherichia coli 042]
Length = 349
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|309785587|ref|ZP_07680218.1| uncharacterized adenine-specific methylase yhdJ domain protein
[Shigella dysenteriae 1617]
gi|308926707|gb|EFP72183.1| uncharacterized adenine-specific methylase yhdJ domain protein
[Shigella dysenteriae 1617]
Length = 200
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+KLP +SV+LIFADPPYN+ N D + ++W + +
Sbjct: 16 TIIHGDALAELKKLPTESVNLIFADPPYNIGKN----------FDGLIEAWKE----ALF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ I LQ + + + +
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFID--LQCRKLFTIKSRIVWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + +E ++ K YTFN DA
Sbjct: 120 KKHYGSMYEPILMMVKDAK--NYTFNGDA 146
>gi|323962523|gb|EGB58103.1| DNA methylase [Escherichia coli H489]
Length = 349
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|227888077|ref|ZP_04005882.1| DNA methylase [Escherichia coli 83972]
gi|227834923|gb|EEJ45389.1| DNA methylase [Escherichia coli 83972]
gi|307552955|gb|ADN45730.1| DNA methylase [Escherichia coli ABU 83972]
gi|315290929|gb|EFU50294.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
Length = 352
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
R G+E++ + + + + +
Sbjct: 325 RRATGVELETERFEQTVREVQDLASQN 351
>gi|224372034|ref|YP_002606199.1| site-specific DNA-methyltransferase (Type III DNA modification
enzyme) [Desulfobacterium autotrophicum HRM2]
gi|223694753|gb|ACN18035.1| site-specific DNA-methyltransferase (Type III DNA modification
enzyme) [Desulfobacterium autotrophicum HRM2]
Length = 634
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 21/127 (16%)
Query: 13 QNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ +W ++ I+G+++ VL+ L K V +I+ DPPYN + +
Sbjct: 78 KEESIDWGSTQNIFIEGDNLEVLKLLQKSYHKKVKMIYIDPPYNTGKDFVYKDNFKDNIK 137
Query: 67 AVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ + + L R +LK +G +++ + +
Sbjct: 138 NYKEITGQVDGEGRNLSNNPETSGRYHTDWLNMMYPRLKLARNLLKDDGVIFISIDDNEV 197
Query: 112 FRIGTML 118
+ M
Sbjct: 198 SNLRKMC 204
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK------K 243
GS+ +RN G ++ KP L+ + + + P II+D F GSGT+ K
Sbjct: 375 HGSKEIRNLFGPQVFSYPKPTGLIKFFVENISDPDAIIMDFFAGSGTTADAMMQQNASDK 434
Query: 244 LRRSFIGIEM 253
R F+ +++
Sbjct: 435 GNRKFLLVQL 444
>gi|74312383|ref|YP_310802.1| putative DNA adenine methyltransferase encoded by prophage
[Shigella sonnei Ss046]
gi|73855860|gb|AAZ88567.1| putative DNA adenine methyltransferase encoded by prophage
[Shigella sonnei Ss046]
gi|323168336|gb|EFZ54019.1| DNA methylase family protein [Shigella sonnei 53G]
Length = 352
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD+I D F G G++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLIADFFMGLGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ + +
Sbjct: 325 RRAIGVELETERFEQT 340
>gi|127421|sp|P18051|MTB2_BACAM RecName: Full=Modification methylase BamHII; Short=M.BamHII;
AltName: Full=N(4)-cytosine-specific methyltransferase
BamHII
gi|39314|emb|CAA37205.1| unnamed protein product [Bacillus amyloliquefaciens]
Length = 265
Score = 85.9 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 47/253 (18%), Positives = 82/253 (32%), Gaps = 23/253 (9%)
Query: 32 LEK-LPAKSVDLIFADPPYNLQLNGQ------------LYRPDHSLVDAVTDSWDKFSSF 78
+++ + ++DL PPY+ N LYR V DK
Sbjct: 1 MKENIGDCTIDLTVTSPPYDDLRNYNGYSFNFEETAQELYRVTKEGGVVVWVVGDKTHKG 60
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
T + + L Y ++ K P
Sbjct: 61 SE----TGSSFRQALYFKELGFNLHDTMIYEKDSISFPDKNRYYQIFEYMFIFSKGKPKT 116
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC---SGSERL 195
+N K + + ++ +++ I +G ++
Sbjct: 117 INLLADRKNKWYN---GKKHIKGHYRKMDGEKVRHHKQNLLKEFGVRFNIWRIPNGHQKS 173
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
HP PE L ++S + GDI+ DPF GSGT+ +A R +IG E+ +
Sbjct: 174 TLDKIAFQHPAIFPEKLAEDHILSWSNEGDIVFDPFMGSGTTAKMAALNNRKYIGTEISK 233
Query: 256 DYIDIATKRIASV 268
+Y DIA +R+ +
Sbjct: 234 EYCDIANERLKNY 246
>gi|283956294|ref|ZP_06373774.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792014|gb|EFC30803.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
jejuni 1336]
Length = 250
Score = 85.9 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 28/238 (11%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL N G + + D + F
Sbjct: 20 KAQLVIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + + V S+ + + + F ++V+RK + +
Sbjct: 80 MLIKEPKECGKSPCMIVFCSFEQQAMLIEVAKKYGFNHYINLVFRKQSSSKVLKANM--- 136
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ + + K N+ + + +++ K+HPTQ
Sbjct: 137 ------KIVGNCEYALILYREKLPKFNNDGKMIYNCMDWQ--------KDEGIPKVHPTQ 182
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KP LL R++ T GD+++DP GSG++ A L R G E+K+D+ A + +
Sbjct: 183 KPIKLLERLISIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSANEIM 240
>gi|260868444|ref|YP_003234846.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
gi|257764800|dbj|BAI36295.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
Length = 352
Score = 85.9 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + E Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---TGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
R G+E++ + + + + +
Sbjct: 325 RRATGVELETERFEQTVREVQDLASQN 351
>gi|91210506|ref|YP_540492.1| putative prophage CP-933O DNA adenine methyltransferase
[Escherichia coli UTI89]
gi|117623488|ref|YP_852401.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli APEC O1]
gi|187733653|ref|YP_001880053.1| DNA methylase [Shigella boydii CDC 3083-94]
gi|218558208|ref|YP_002391121.1| DNA adenine methyltransferase ( DNA methylase) from phage origin
[Escherichia coli S88]
gi|237705245|ref|ZP_04535726.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91072080|gb|ABE06961.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli UTI89]
gi|115512612|gb|ABJ00687.1| putative DNA adenine methyltransferase encoded by prophage CP-933O
[Escherichia coli APEC O1]
gi|187430645|gb|ACD09919.1| DNA methylase [Shigella boydii CDC 3083-94]
gi|218364977|emb|CAR02674.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia coli S88]
gi|226900002|gb|EEH86261.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294491791|gb|ADE90547.1| DNA methylase [Escherichia coli IHE3034]
gi|307627204|gb|ADN71508.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia coli UM146]
gi|315288675|gb|EFU48073.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
gi|323949606|gb|EGB45492.1| DNA methylase [Escherichia coli H252]
Length = 349
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|187730991|ref|YP_001879898.1| DNA methylase [Shigella boydii CDC 3083-94]
gi|187427983|gb|ACD07257.1| DNA methylase [Shigella boydii CDC 3083-94]
Length = 349
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|261415697|ref|YP_003249380.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261372153|gb|ACX74898.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302326866|gb|ADL26067.1| putative type III restriction-modification system, Mod subunit
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 639
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 21/208 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG---QLYRPDHSL 64
E + ++ I+G+++ L+ L V +I+ DPPYN + +R D +
Sbjct: 88 EESKNFDTTENLYIEGDNLEALKLLQEGYLGKVKMIYIDPPYNTGNDFIYKDDFRMDSAK 147
Query: 65 V----DAVTDSWDK--------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
AV D ++ + + + LL R +L +G +++ +
Sbjct: 148 YAEESGAVDDEGNRMVQNSDSNGRFHSDWCSMIYSRLLLARNLLTDDGVIFISIDDNEQA 207
Query: 113 RIGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + +++W+ + N F + + +
Sbjct: 208 NLKKICDEVFGGSNFVANVIWKHTQQSKNDE-LHFSRQYNHTFVYAHDMNQLPRFYMERT 266
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNK 198
+ +D SG R N
Sbjct: 267 AEDNVNYSNPDNDPKGLWRSGDVRSPNY 294
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
+G ++ T KP L+ +L P I+LD F GS T+ +L R FI ++
Sbjct: 380 NGIQVFDTPKPIELVQNMLALLRDPSGIVLDFFSGSATTAHAVMQLNAEDGGHRKFIMVQ 439
Query: 253 M 253
+
Sbjct: 440 L 440
>gi|168763633|ref|ZP_02788640.1| DNA methylase [Escherichia coli O157:H7 str. EC4501]
gi|217329285|ref|ZP_03445365.1| DNA methylase [Escherichia coli O157:H7 str. TW14588]
gi|189366278|gb|EDU84694.1| DNA methylase [Escherichia coli O157:H7 str. EC4501]
gi|217317724|gb|EEC26152.1| DNA methylase [Escherichia coli O157:H7 str. TW14588]
Length = 352
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|260867672|ref|YP_003234074.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
gi|257764028|dbj|BAI35523.1| putative DNA methylase [Escherichia coli O111:H- str. 11128]
Length = 352
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|329667811|gb|AEB93759.1| Adenine specific DNA methylase Mod [Lactobacillus johnsonii DPC
6026]
Length = 659
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 18/176 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-----R 59
+NQ ++ G+++ VL L +D+I+ DPPYN +G +Y
Sbjct: 82 DEKQNQGEGENSQNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEY 141
Query: 60 PDHSLVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D L D D+ S A+ F L+ +R+L G ++V +
Sbjct: 142 SDDKLKDMFGLDDDQVERLKSIQGKSSHSAWLTFMYPRLVMAKRLLSDKGIIFVSIDDNE 201
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ ++ P + E ++ + + Y
Sbjct: 202 SADLTMLMNSVFGEQQFKVQFIWTKTETPPALSNYSRRTTEYVLSFEKNSYGEKYY 257
Score = 40.4 bits (93), Expect = 0.49, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLR--- 245
G +RL + + + KP +L+ ++ ++D F GS T+ +L
Sbjct: 382 GVKRLDELNLKNMFTNPKPTSLVKYLINIVGHEHPYITVMDFFAGSSTTADAVMQLNEED 441
Query: 246 ---RSFIGIEM 253
R FI +++
Sbjct: 442 GGHRKFIMVQL 452
>gi|312962033|ref|ZP_07776530.1| DNA modification methylase [Pseudomonas fluorescens WH6]
gi|311283843|gb|EFQ62427.1| DNA modification methylase [Pseudomonas fluorescens WH6]
Length = 427
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 34/172 (19%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY---------------------- 58
+I+ G+ I ++ LP SVD + DPPY ++ G+ +
Sbjct: 5 HQILVGDCIEMMRTLPDNSVDSVVTDPPYGIRFMGKSWDGQDIEARAAYRASMPSHAGAC 64
Query: 59 --RPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
H + A +D + A+ AFT W C RVLKP G L + +
Sbjct: 65 GPNGGHRSIAAEAGKYDLTPAGMRAFQAFTLEWATECLRVLKPGGHLLSFAAARTYHHMA 124
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNF---------RGRRFQNAHETLIWASPS 158
++ F I + I+W + P +G + AHE + A
Sbjct: 125 VGIEMSGFEIRDQIMWVFGSGFPKSHNLKGKHEGKGTALKPAHEPICMARKP 176
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP L++ +L T PG + LDPF GSG++G A + FIG E+ + Y+ IA
Sbjct: 343 HPTVKPTDLMAYLLRLVTPPGGVALDPFMGSGSTGKAAMREGFQFIGCEIDEQYVAIARA 402
Query: 264 RIASV 268
RI
Sbjct: 403 RIEHE 407
>gi|187730072|ref|YP_001880669.1| DNA methylase [Shigella boydii CDC 3083-94]
gi|187427064|gb|ACD06338.1| DNA methylase [Shigella boydii CDC 3083-94]
Length = 349
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD + D F GSG++ A L R IG+E++ +
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDQVADFFMGSGSTVKAALALGRRAIGVELETGRFEQT 340
>gi|315585904|gb|ADU40285.1| possible type III DNA modification enzyme (methyltransferase)
[Helicobacter pylori 35A]
Length = 445
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 24/179 (13%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + +K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDSFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ ++ + + P + + HE ++ + K
Sbjct: 194 DNEAAQLKLLCDEIFGEGNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMI 252
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ Y + + ++ + + + E L+ D K+ KP +L+ ++
Sbjct: 345 SIRYCREGERIVMPTNEISKKDNVGTNETASKELLKLFDDNKIFNFNKPVSLIKYLISIC 404
Query: 221 ---TKPGDIILDPFFGSGTSGAVAKKLR 245
T GDIILD F GSGT+ +
Sbjct: 405 SNNTNEGDIILDFFAGSGTTAHAVLESN 432
>gi|261227063|ref|ZP_05941344.1| DNA methylase [Escherichia coli O157:H7 str. FRIK2000]
Length = 352
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|300937239|ref|ZP_07152086.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
gi|300457695|gb|EFK21188.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
Length = 349
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPVGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ VA L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKVALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|15645218|ref|NP_207388.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
26695]
gi|2313713|gb|AAD07659.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
26695]
Length = 598
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 69/213 (32%), Gaps = 33/213 (15%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD----------- 66
+ II G+++ L+ L + + + +I+ DPPYN + + PD+ D
Sbjct: 76 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGND-EFIYPDNFRQDYQKILREVGLM 134
Query: 67 AVTDSWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ ++ + S + +F L R +LK +G +++ +
Sbjct: 135 EIDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECA 194
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + RK+ N HE L+ + YT
Sbjct: 195 NLKILCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKN---YTNLLGGE 251
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
K +D + + ++ + + +
Sbjct: 252 KNLENYKNPDNDPNGAWINDNPSAKSGNMKTGY 284
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 77/254 (30%), Gaps = 21/254 (8%)
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
N Q L + +++ D + K
Sbjct: 229 NYQHEFLLCYAKDKNYTNLLGGEKNLENYKNPDNDPNGAWINDNPSAKSGNMKTGYFGVT 288
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
N + + + + + + ++ + Y +
Sbjct: 289 NPYTNKVDYPPVGMFWRFSQNTIQKHIDEGRICFKKEHKDNERGFIYK-----RYLKDLK 343
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDII 227
+ + + + + + E L GE K + +I++ ST GDII
Sbjct: 344 TTQKTFDSLIFSDNCYMNQAATKELLNLGMGE-YFTYPKGVEFMKKIILHSTTPNEGDII 402
Query: 228 LDPFFGSGTSGAVAK------KLRRSFIGIEMKQD------YIDIATKRIASVQPLGNIE 275
LD F GSGT+ K R FI +++ ++ D K + S +P+ +
Sbjct: 403 LDFFAGSGTTVHAVMELNAEDKGNREFILVQIDEEIKEDESAYDFCKKELKSAKPVISD- 461
Query: 276 LTVLTGKRTEPRVA 289
+T+ KR +++
Sbjct: 462 ITIERVKRAAQKIS 475
>gi|309793314|ref|ZP_07687741.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
gi|308122901|gb|EFO60163.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
Length = 349
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPVGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|320175402|gb|EFW50504.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
Length = 349
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD + D F GSG++ A L R IG+E++ +
Sbjct: 283 HPCEKPAEMLQQIINASSRPGDQVADFFMGSGSTVKAALALGRRAIGVELETGRFEQT 340
>gi|299138965|ref|ZP_07032142.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
gi|298599119|gb|EFI55280.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX8]
Length = 197
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + +++ + + P + + A + A
Sbjct: 26 WEKPQGTNFLNAKKYPMKVHENILVFCDQTPLYHPQMTTGATPYVTGAHYGSSNYRPMDY 85
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
A+ RS L+ +HPTQKP +L ++ + + GD +
Sbjct: 86 AGGKVNADGSRYPRSV-----------LQFIPERGMHPTQKPVSLCEWLIRTYSNAGDTV 134
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
LD GSGT+ A R IGIE Q Y DIA +R +
Sbjct: 135 LDCCMGSGTTILAALNTDRKGIGIEQDQKYFDIAAQRCKETEANQ 179
>gi|320353483|ref|YP_004194822.1| adenine-specific DNA-methyltransferase [Desulfobulbus propionicus
DSM 2032]
gi|320121985|gb|ADW17531.1| Site-specific DNA-methyltransferase (adenine-specific)
[Desulfobulbus propionicus DSM 2032]
Length = 529
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 11/217 (5%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
K A N + + + + II G+++ L+ L + I+ DPPYN +Y
Sbjct: 25 KRHFAFNGDADGVNSTGNTIIHGDNLEALKALLPEYEGRIRCIYIDPPYNTGNESWVYND 84
Query: 61 DHSLVDAVT-------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + V + + + L RR+L +G++W+ +
Sbjct: 85 NVNEPQIVKWLGQVVGKDGEDLCRHDKWLCMMYPRLQLLRRLLAEDGSIWISIDDNEQAH 144
Query: 114 IGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ ++ V + P R F H+ ++ + +
Sbjct: 145 LRAVMDEIFGQRNFITTVIWQKVYSPKNSARHFSEDHDFIMVYAKNASQWVPNPMPRTEA 204
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
D P + RN GE + P
Sbjct: 205 QNKAYKNYDHDPRGPWKASDLSARNYYGEGTYAITCP 241
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQD 256
+ T KP L+ RIL +T IILD F GSGT+G L R FI IEM
Sbjct: 327 VFVTPKPTRLIDRILHIATDKDAIILDSFAGSGTTGHAVLNLNRQDGGNRTFILIEMMDY 386
Query: 257 YIDIATKRIAS 267
I +RI
Sbjct: 387 AETITAERIKR 397
>gi|307151722|ref|YP_003887106.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306981950|gb|ADN13831.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
Length = 328
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 57/312 (18%), Positives = 112/312 (35%), Gaps = 71/312 (22%)
Query: 29 ISVLEKLPAKSVDLIFADPPY---------NLQLN-------------GQLYRPDHSLVD 66
+++L ++P +++DLI PP+ N+ + ++ +P+ SLV
Sbjct: 1 MAILSEVPDETIDLICTSPPFALLRKKEYGNVNADQYVQWFETFAQQFYRILKPNGSLVI 60
Query: 67 AVTDSWDKFSSFEAYDAFT---------------------------------RAWLLACR 93
+ SW K + F W+ R
Sbjct: 61 DIGGSWVKGYPVRSLYHFELVMHLCKPRIEGGLGFYLAQELYWYNPAKLPTPAEWVTVRR 120
Query: 94 RVLKP--NGTLWVIGSYH----NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+K N W+ H N + + + ++ N + + + +N
Sbjct: 121 ERVKDAVNTIWWLSKDPHPKACNKNVLRPYSKAMENFLKNGYDAKLRPSGHDISRKFQKN 180
Query: 148 AHETLI----------WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ A+ TF++ + V + S +R
Sbjct: 181 RGGAIPPNIIDAQESAVATAIGSPVLATFDWLLSNDLAQPVNVISASNTASNDYYQRRCK 240
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
++G K HP + P+AL I+ T+PGD++LDPF GS +G VA+ L+R ++ I++ ++Y
Sbjct: 241 EEGLKPHPARFPQALPEFIINLCTEPGDLVLDPFCGSNVTGRVAEDLKRHWLAIDINEEY 300
Query: 258 IDIATKRIASVQ 269
+ + R
Sbjct: 301 LKASQYRFEQAA 312
>gi|300902573|ref|ZP_07120550.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
gi|301301981|ref|ZP_07208114.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
gi|300405386|gb|EFJ88924.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
gi|300842533|gb|EFK70293.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
gi|315253749|gb|EFU33717.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
Length = 349
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ + I ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCGHRRASDI-EIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R IG+E++ +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQT 340
>gi|325525531|gb|EGD03327.1| type III DNA modification methyltransferase [Burkholderia sp.
TJI49]
Length = 668
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 17/165 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------ 55
E+ + + + +I+G+++ V++ L V L++ DPPYN +
Sbjct: 89 EDSVAWDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRH 148
Query: 56 --QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ V T++ + L +L G + V H +
Sbjct: 149 YLAMTGQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIVVHIDEHEVHA 208
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ ML+ + V P R HE+L+ + +
Sbjct: 209 LVLMLREIFGEENELGVAVWDKRNPKGDARGIAYQHESLVLFARN 253
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 267 KRNAQRMLDAARDAMYRSGTPKDAAKAFRAWMKAQTNLSGGEAMYDRLSEDGRVYRLVSM 326
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N F L V K MP R + L+ T
Sbjct: 327 AWPN----KKKAPEEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGADETT 382
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + GS+ K KP + ++ T+ DI
Sbjct: 383 QPQRIYYLDEN-MYENVPSVLPFGGSDDALLKTLGIPFEQPKPVDFAAAVIGWCTRGDDI 441
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 442 VLDCFAGSGSTGHAVMQVNATDGGARRYIMVQL 474
>gi|15612476|ref|NP_224129.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori J99]
gi|4156030|gb|AAD06989.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 18/164 (10%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA--------V 68
K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D S +
Sbjct: 89 KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKTLDYS 148
Query: 69 TDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ D + + +F LL + +LK +G +++ + ++ +
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKLLCDEIF 208
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ P + + HE ++ + K
Sbjct: 209 GEGNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMI 252
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ Y + + ++ + + + E + D K+ KP +L+ ++
Sbjct: 345 SIRYCREGERIVMPTNEISKKDNVGTNETASKELFKLFDNNKIFNFNKPVSLIKYLISIC 404
Query: 221 ---TKPGDIILDPFFGSGTSGAVAKKLR 245
T GDIILD F GSGT+ +
Sbjct: 405 SNNTNEGDIILDFFAGSGTTAHAVLESN 432
>gi|168751107|ref|ZP_02776129.1| DNA methylase [Escherichia coli O157:H7 str. EC4113]
gi|168783722|ref|ZP_02808729.1| DNA methylase [Escherichia coli O157:H7 str. EC4076]
gi|195939154|ref|ZP_03084536.1| putative DNA methylase [Escherichia coli O157:H7 str. EC4024]
gi|208811074|ref|ZP_03252907.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
gi|208815815|ref|ZP_03256994.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
gi|208820893|ref|ZP_03261213.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
gi|209396181|ref|YP_002271441.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
gi|209397302|ref|YP_002270274.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
gi|254792813|ref|YP_003077650.1| DNA methylase [Escherichia coli O157:H7 str. TW14359]
gi|188014746|gb|EDU52868.1| DNA methylase [Escherichia coli O157:H7 str. EC4113]
gi|188998945|gb|EDU67931.1| DNA methylase [Escherichia coli O157:H7 str. EC4076]
gi|208724580|gb|EDZ74288.1| DNA methylase [Escherichia coli O157:H7 str. EC4206]
gi|208732463|gb|EDZ81151.1| DNA methylase [Escherichia coli O157:H7 str. EC4045]
gi|208741016|gb|EDZ88698.1| DNA methylase [Escherichia coli O157:H7 str. EC4042]
gi|209157581|gb|ACI35014.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
gi|209158702|gb|ACI36135.1| DNA methylase [Escherichia coli O157:H7 str. EC4115]
gi|254592213|gb|ACT71574.1| DNA methylase [Escherichia coli O157:H7 str. TW14359]
Length = 352
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + E Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---TGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|165976075|ref|YP_001651668.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|165876176|gb|ABY69224.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
Length = 618
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 60/208 (28%), Gaps = 21/208 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ I+G+++ L+ L V +I+ DPPYN + + +
Sbjct: 98 NLFIEGDNLEALKLLQETYLGKVKMIYIDPPYNTGKDFIYKDNFAMANEDYQRESGQVDE 157
Query: 78 ---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-L 121
+ + + L R +L +G +++ + + +
Sbjct: 158 EGNRLVVNSESNGRFHSDWLSMIYSRLKLARNLLTDDGVIFISIDDNEQANLKRVCDEVF 217
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
V K + R F HE LI + ++ T N +
Sbjct: 218 GERNFVADVIWKKKNVVQNDARFFSTDHEYLICYTK--NSEYLTLNRLPRTDEQKSRYQN 275
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKP 209
D S L+ K G + P
Sbjct: 276 PDNDPRGDWTSVALQAKSGSSSYEITFP 303
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ +D + S E ++ + T KP + +++ + IILD F GS T
Sbjct: 358 NTIWFNDEVGSTQSSKEMVKKLLNSNIFDTPKPIEYIKKMMRLTCNNNSIILDFFAGSAT 417
Query: 237 SGAVAKK------LRRSFIGIEM 253
+ + R FI +++
Sbjct: 418 TAHAVMQLNAEDGGNRKFIMVQI 440
>gi|54303973|emb|CAG24072.1| restriction endonuclease EcoP15I, modification subunit [Escherichia
coli]
Length = 644
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 23/197 (11%)
Query: 1 MSQKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ K LA ++ N E K+ +IKG+++ VL+ + + V +I+ DPPYN +
Sbjct: 72 LPPKTLLAEDKTHNQQEENKNSQHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKD 131
Query: 55 GQLYRPDH-------SLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKP 98
G +Y D S + + K SS A+ F L R +++
Sbjct: 132 GFVYNDDRKFTPEQLSELAGIDLDEAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMRE 191
Query: 99 NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+GT+++ ++ ++ + + + N N HE +I + +
Sbjct: 192 DGTIFISIDHNEFSQLKLVCDEIFGEQNHVGDLVWKNATDN-NPSNIAVEHEYIIVYTKN 250
Query: 159 PKAKGYTFNYDALKAAN 175
+ + + N
Sbjct: 251 KEQLISEWKSNISDVKN 267
Score = 36.6 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 47/169 (27%), Gaps = 6/169 (3%)
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW---RKSNPMPN 139
W R L P I ++ DI+ +K P
Sbjct: 287 EKYTQWFREHRSELWPLDRYKYIDKDGIYTGSQSVHNPGKEGYRYDIIHPKTKKPCKQPL 346
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-MRSDWLIPICSGSERLRNK 198
R + + L+ + A + Q + S + + L+
Sbjct: 347 MGYRFPLDTMDRLLSEEKIIFGDDENKIIELKVYAKDYKQKLSSVIHLDGRVATNELKEL 406
Query: 199 DGEKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
E P K L+ ++ + I+LD F GSGT+ L
Sbjct: 407 FPEMTQPFTNAKTIKLVEDLISFACDGEGIVLDFFAGSGTTAHTVFNLN 455
>gi|317055783|ref|YP_004104250.1| adenine-specific DNA-methyltransferase [Ruminococcus albus 7]
gi|315448052|gb|ADU21616.1| Site-specific DNA-methyltransferase (adenine-specific)
[Ruminococcus albus 7]
Length = 683
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 24/196 (12%)
Query: 17 FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---------------GQLY 58
+ ++ I+G+++ L+ L V +I+ DPPYN + G
Sbjct: 106 IDTENIYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYEDDFSLDTGEYLGNSG 165
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ D V ++ + L + +L +G +++ H + + M
Sbjct: 166 QFDEEGNRLVQNTESNGRFHTDWLNMMYPRLRIAKDLLSEDGAIFISIDEHEVGNLRKMC 225
Query: 119 Q--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
++D+ W+++ M N + K + A +
Sbjct: 226 DEVFGGACFVSDVAWQRTYSMRNDVKGIAA----EIEHVLVYGKQPAWQPKKLARTEKMD 281
Query: 177 DVQMRSDWLIPICSGS 192
D +
Sbjct: 282 SKYKNPDNDPRGAWRN 297
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIE 252
DG + T KP LL RI+ +T D++LD F GSGT+ K+ R +I ++
Sbjct: 450 DGTTVFDTPKPVRLLDRIITIATNTEDVVLDFFSGSGTTAESLLKMNMSDSGNRKYILVQ 509
Query: 253 MKQDY--------IDIATKRIASVQPLGNIE 275
+ ++ +I +RI E
Sbjct: 510 INEETRLPSYANLCEIGEERIRRAGKKIKEE 540
>gi|295091228|emb|CBK77335.1| Adenine specific DNA methylase Mod [Clostridium cf. saccharolyticum
K10]
Length = 657
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 54/166 (32%), Gaps = 18/166 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---------------QLY 58
F+ ++ I+G+++ VL+ L + +I+ DPPYN +
Sbjct: 101 FDSENLYIEGDNLEVLKLLQETYLDKIKMIYIDPPYNTGNDFVYEDDFAQSTEEYMANSG 160
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + V ++ + L + +L +G +++ + + + +
Sbjct: 161 QFNEEGNRLVQNTESNGRFHTDWLNMIHPRLRFAKDLLSDDGVIFISIDDNEVSNMLNVC 220
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ + + H+ ++ S S + Y
Sbjct: 221 NEVFGENHFMACFPRVTKKAGKTTEAIAKNHDYILAYSKSDSPRLY 266
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 26/162 (16%)
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ + D WR S + +F A+ ++ ++ YT Y +
Sbjct: 322 YEKYLERKSGKHSRADWAWRWSKELFDF-----GYANGFIVVKKYENYSRIYTKTYQNAR 376
Query: 173 AANEDV-----QMRSDWLIPICSGSERLRNKDGEKLHPTQ----------KPEALLSRIL 217
M I E + D K H TQ KP +LL ++
Sbjct: 377 IVKNGTKFSIEYMNRTKAISTLEFVENEFSNDNSKKHLTQLFDSNVFDYSKPTSLLKALV 436
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
STK GD ILD F GS T+ +L R FI +++
Sbjct: 437 QYSTKEGDTILDFFSGSATTAHAVMQLNAEDVGHRKFIMVQL 478
>gi|296534837|ref|ZP_06897177.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
49957]
gi|296264835|gb|EFH11120.1| DNA (cytosine-5-)-methyltransferase [Roseomonas cervicalis ATCC
49957]
Length = 267
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 33/248 (13%)
Query: 21 DKIIKGNSISV--LEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS- 76
+++ G++ S + +L + L+ DPPY + + P+ V+ +
Sbjct: 18 HRLLCGDATSAADVARLLDGTRPHLMITDPPYGVNYD-----PEWRNEAGVSATMRTGKV 72
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + + AW L P +V + + + L+ F I + IVW KS
Sbjct: 73 ANDDRADWREAW------TLFPGDVAYVWHAGVHARTVIESLEAAGFAIRSQIVWAKSRF 126
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ RG L A L PI +G
Sbjct: 127 VLG-RGDYHWQHEPALYAVRKGATGHWQGARDQAT-------------LWPISTGG---- 168
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++D +H TQKP + R +++++ PG+ + +PF GSG++ A+ R +E+
Sbjct: 169 DEDAATVHGTQKPVECMRRPMLNNSAPGEAVYEPFCGSGSTIIAAETSGRICYAMEIDPR 228
Query: 257 YIDIATKR 264
Y+D+A +R
Sbjct: 229 YVDVAVRR 236
>gi|170731402|ref|YP_001763349.1| site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia cenocepacia MC0-3]
gi|169814644|gb|ACA89227.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia cenocepacia MC0-3]
Length = 668
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 94 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 153
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ V T++ + L +L G + V H + + ML
Sbjct: 154 GQTDAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 213
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 214 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 253
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L P G ++ V
Sbjct: 267 KRNAQRMLDAAHDAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSPEGRVYRLVSM 326
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 327 AWPN----KKKAPDEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 382
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 383 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDI 441
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 442 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 474
>gi|306818543|ref|ZP_07452266.1| DNA restriction-modification system, DNA methylase [Mobiluncus
mulieris ATCC 35239]
gi|304648716|gb|EFM46018.1| DNA restriction-modification system, DNA methylase [Mobiluncus
mulieris ATCC 35239]
Length = 419
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 75/211 (35%), Gaps = 10/211 (4%)
Query: 81 YDAFTRAWLLA---CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
Y W+ ++ K G +V G + ++ I+ + +
Sbjct: 3 YPRPGYHWVNEQIKMLQIFKDWGE-YVTGDFTFEEKVNREKVCGPGVIIREDIRPLVWLD 61
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ A L P+ G L + + S++ +
Sbjct: 62 WTEEKGLARYAQGNLPVYYPTSNGYGGFNLKRYLIDMTSGKTPSNFFSWQDVGHSDKAKK 121
Query: 198 K-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ G + T KPE LL RI+ + PGDI+LD F GSGT+ AVA+K+ R ++ E
Sbjct: 122 EIKALFPGMEPFTTPKPERLLERIIHIGSNPGDIVLDCFAGSGTTAAVAQKMGRRWVTCE 181
Query: 253 MKQDYID-IATKRIASVQPLGNIELTVLTGK 282
+ D + R+ V + T K
Sbjct: 182 LVADTFERFTKPRLMKVINDQDPGGVTYTKK 212
>gi|172059095|ref|YP_001806747.1| site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria MC40-6]
gi|171991612|gb|ACB62531.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria MC40-6]
Length = 668
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 94 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 153
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 154 GQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 213
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 214 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 253
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 267 KRNAQRMLDAAHDAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVSM 326
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N F L V K MP R + LI T
Sbjct: 327 AWPN----KKKAPEEYFTPLIHPVTGKPCAMPARGWRNPPATMQALIERGQIEFGPDETT 382
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 383 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDQPKPVDFAAAVIGWCTRGDDI 441
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F G+G++G ++ R +I +++
Sbjct: 442 VLDCFAGAGSTGHAVMQVNATDGGARRYILVQL 474
>gi|170698060|ref|ZP_02889141.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria IOP40-10]
gi|170137021|gb|EDT05268.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria IOP40-10]
Length = 668
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 94 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 153
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 154 GQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 213
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 214 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 253
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 267 KRNAQRMLDAAHDAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVSM 326
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N F L V K MP R + LI T
Sbjct: 327 AWPN----KKKAPEEYFTPLIHPVTGKPCAMPARGWRNPPATMQALIERGQIEFGPDETT 382
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 383 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDQPKPVDFAAAVIGWCTRGDDI 441
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 442 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 474
>gi|45569523|ref|NP_996592.1| adenine DNA methyltransferase [Bordetella phage BMP-1]
Length = 200
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/215 (21%), Positives = 77/215 (35%), Gaps = 30/215 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ---LNGQLYRPD------HSLVDAVTDSW 72
++I+G ++ L +P++SVD + DPPY+ + + PD S T S
Sbjct: 7 QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSG 66
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D +Y + W+ C RVLKP G + + + +Q + I W
Sbjct: 67 D-SRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWD 125
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K F++ E ++W + VQ+ D C +
Sbjct: 126 KGRGARAPHKGYFRHQCEYVVWGTKGAA-----------------VQLEHDGPFDGCIQA 168
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
R+ K H T KP AL+ ++ G
Sbjct: 169 VVRRDD---KHHLTGKPTALMRELVRPVMPGGGWC 200
>gi|115350076|ref|YP_771915.1| adenine-specific DNA-methyltransferase [Burkholderia ambifaria
AMMD]
gi|115280064|gb|ABI85581.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria AMMD]
Length = 672
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 98 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 157
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 158 GQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 218 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 257
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 271 KRNAQRMLDAAHDAVYRSGNAKDAQKAYRAWMKAQTNLSGGEVMYDRLSADGRVYRLVSM 330
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N F L V K MP R + LI T
Sbjct: 331 AWPN----KKKAPEEYFTPLIHPVTGKPCAMPARGWRNPPATMQALIERGQIEFGPDETT 386
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 387 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDQPKPVDFAAAVIGWCTRGDDI 445
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 446 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 478
>gi|170697761|ref|ZP_02888848.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria IOP40-10]
gi|170137376|gb|EDT05617.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ambifaria IOP40-10]
Length = 663
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 59/166 (35%), Gaps = 21/166 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------QLYRPDHSL 64
++ I+G+++ L+ L V +I+ DPPYN + L + +
Sbjct: 112 RNLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGKDFIYEDDFSSDATSYLLKSNQVE 171
Query: 65 VDA---VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
V V + + + A L R +L +G +++ + + + + +
Sbjct: 172 VSGDRLVVNVETNGRFHSDWLSMIYARLRLARNLLSEDGVIFISIDDNEVDNLRKVCSEV 231
Query: 122 NFWILNDIVWRKSNPMPNFR-GRRFQNAHETLIWASPSPKAKGYTF 166
+ + + N ++ +HE ++ + + A +
Sbjct: 232 FGE--GNFIAQIVWEGANKNDAKQIGVSHEYVLVYAKNRSAVPREW 275
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD---IILDPFF 232
+ + S + P S SERL + G + K E ++++ + +T D I++D F
Sbjct: 400 DALTPPSVFYQPARSASERLASLLGAGIFDFPKDETVIAKFIEMATTGADDDCIVMDFFA 459
Query: 233 GSGTSGAVAKKLR------RSFIGIEM 253
GS T+ +L R F+ +++
Sbjct: 460 GSATTAHAVMQLNADDGKRRRFVLVQL 486
>gi|315106921|gb|EFT78897.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
HL030PA1]
Length = 663
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-----DGEK 202
AH + + T NE RS W + +++ G
Sbjct: 332 AHTRIDDGNWPEFFVTATSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGAT 391
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE-MKQDYIDIA 261
T KPE LL RI+ + PGDI+LD F GSGT+ AVA+K+ R ++ E ++ +
Sbjct: 392 PFSTPKPERLLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFT 451
Query: 262 TKRI-ASVQPLGNIELTVLTGKR 283
R+ + +T GKR
Sbjct: 452 RPRLEKVLNDQDPGGITRTKGKR 474
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 27/223 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
+ + A +E + + + +I G + + L ++P V LI+ DPP+N
Sbjct: 55 PKSDEFAYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA 114
Query: 53 LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
Y + + R L +++L +G++WV Y
Sbjct: 115 QTFASYEDN--------------LEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENH 160
Query: 113 RIGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY-- 168
R+ +L + + VW+K++ R + L +A+
Sbjct: 161 RMRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAA 220
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
D + +N D + W S + + Q P +
Sbjct: 221 DNARFSNPDGDSKGVWFSDNRSAPTNVMSWQHPSTFAIQHPIS 263
>gi|323187745|gb|EFZ73046.1| DNA methylase family protein [Escherichia coli RN587/1]
Length = 349
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R IG+E++ +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQT 340
>gi|119717929|ref|YP_924894.1| site-specific DNA-methyltransferase (adenine-specific)
[Nocardioides sp. JS614]
gi|119538590|gb|ABL83207.1| Site-specific DNA-methyltransferase (adenine-specific)
[Nocardioides sp. JS614]
Length = 392
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 18/141 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ ++G+++ VL ++P + VDL++ DPPYN + + D F
Sbjct: 6 NVFVEGDNLDVLPRVPELVGRPVDLVYIDPPYNTGNDFAYH--------------DDFRC 51
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
A+ R L A R VL G ++V H + + ++ L V NP
Sbjct: 52 HAAWVEMMRPRLTAAREVLAETGAIFVSIDDHEVAHLRLLMDEVYGEQNLLAQVVVNLNP 111
Query: 137 MPNFRGRRFQNAHETLIWASP 157
GR F +HE L+ +
Sbjct: 112 KGRQLGRGFATSHEYLLVYAR 132
Score = 39.6 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 203 LHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLR------RSFIGI 251
+ + KP LL RIL T PGD ++LD F GSGT+G R + I
Sbjct: 295 VFESPKPTGLLRRIL--GTMPGDAVVLDFFAGSGTTGHAVALQNAADGGTRRCVSI 348
>gi|224438416|ref|ZP_03659341.1| pseudogene (putative type III restriction-modification system
modification protein) [Helicobacter cinaedi CCUG 18818]
gi|313144855|ref|ZP_07807048.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129886|gb|EFR47503.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 623
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 69/209 (33%), Gaps = 24/209 (11%)
Query: 18 EWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHS----------- 63
K+ +IKG+++ VL+ L V +I+ DPPYN +Y + S
Sbjct: 98 NSKNVLIKGDNLEVLKHLKNAYYRKVKMIYIDPPYNTGNGDFIYNDERSFTPQSLAQMAN 157
Query: 64 -----LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + S+ A+ +F L R++L+ +G +++ + + +
Sbjct: 158 IELEEAGSILNLTLKNSSTHSAWLSFMYPRLYIARQLLRDDGVIFISIDDNEQANLKLLC 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ + + + F HE ++ + F +
Sbjct: 218 DEIFGEDNFVSCFVWQKKSGGGQAKYFYEGHEYVLIYCKNKDLLQGLFKIKE-----KGK 272
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ L+ K+ + +P Q
Sbjct: 273 IETDFLRKIHGKYTNNLKLKNVYEKYPNQ 301
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC-SGSERLRNKDGEKLHPTQK 208
+ L K FN N M S G+ G+ + K
Sbjct: 332 QNLTNGIYFLKPYNDKFNLVCRNNENNQALMYSIVSGVWTSDGNTENEQLFGKLVFNDPK 391
Query: 209 PEALLSRILVSST---KPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEMK 254
P LL +++ S+T DIILD F GSGT+ R FI +++
Sbjct: 392 PVNLLKQLIQSATMQGNSNDIILDFFAGSGTTAQAVMELNAQDNGNREFILVQLD 446
>gi|199597360|ref|ZP_03210791.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus HN001]
gi|199591876|gb|EDY99951.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus HN001]
Length = 250
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 19/168 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-----R 59
+N+N K+ G+++ VL L +D+I+ DPPYN +G +Y
Sbjct: 82 DEQQNKNEGKNSKNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEY 141
Query: 60 PDHSLVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D L D+ S A+ F L+ + +L +G ++V +
Sbjct: 142 SDDQLERMFDIDDDQVERLKSIQGKSSHSAWLTFMLPRLILAKGLLSDSGVIYVSIDDNE 201
Query: 111 IFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
++ + ++ L D++W+ + N + + TL +A
Sbjct: 202 QAQLKLLCDDIFGEINFLADVIWKHTQQSKNDEPFFARMYNHTLAYAK 249
>gi|191169084|ref|ZP_03030846.1| DNA methylase [Escherichia coli B7A]
gi|190900878|gb|EDV60665.1| DNA methylase [Escherichia coli B7A]
Length = 349
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---EGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPTGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
H L N + ++ + + RG + H+ + S + YT
Sbjct: 192 HWFGTSQWQLPNEGDYNKLQALFARVAAEKHQRGELEKPHHQLVSTYSELN--RQYTELL 249
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
K + + + ++ G+ HP +KP +L +I+ +S++PGD++
Sbjct: 250 SEYKNLRRYFGVTAQVPYTDVWTHKPVQYYPGK--HPCEKPAEMLQQIINASSRPGDLVA 307
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
D F GSG++ A L R IG+E++ +
Sbjct: 308 DFFMGSGSTVKAAMALGRCAIGVELETGRFEQT 340
>gi|256617858|ref|ZP_05474704.1| DNA modification methylase [Enterococcus faecalis ATCC 4200]
gi|307269936|ref|ZP_07551262.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4248]
gi|256597385|gb|EEU16561.1| DNA modification methylase [Enterococcus faecalis ATCC 4200]
gi|306513726|gb|EFM82332.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4248]
gi|315148884|gb|EFT92900.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4244]
Length = 254
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 32/247 (12%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL G++ + + + D+ + F
Sbjct: 24 KAQLVIADIPYNLGKNAYASSSAWYEGGKIENGESNKANKSFFDTDENFRISEFMHFCSK 83
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L + + + V ++ + + + F +V+ K + +
Sbjct: 84 MLKKEPKEVGKAPAMIVFCAFQQLQMVIDYGKKYGFNNHIPLVFIKKSSPQVLKANM--- 140
Query: 148 AHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A Y + L N D +M +W E + K+HP
Sbjct: 141 ---------KVVGATEYALVLYREKLPKFNNDGRMVLNWF-------EWETDNSYPKIHP 184
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKP ++ R++ T GD+++DP GSG++ A +L R+ G E+K++ ++A +++
Sbjct: 185 TQKPIPVIKRLIEIFTDYGDVVIDPCAGSGSTLRAAAELNRNAYGFEIKKEMYEVAQEKM 244
Query: 266 ASVQPLG 272
S P+G
Sbjct: 245 LSNIPMG 251
>gi|168803035|ref|ZP_02828042.1| DNA methylase [Escherichia coli O157:H7 str. EC508]
gi|189375205|gb|EDU93621.1| DNA methylase [Escherichia coli O157:H7 str. EC508]
Length = 352
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + E Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---TGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|238923700|ref|YP_002937216.1| putative type III modification methyltransferase [Eubacterium
rectale ATCC 33656]
gi|238875375|gb|ACR75082.1| probable type III modification methyltransferase [Eubacterium
rectale ATCC 33656]
Length = 538
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 74/229 (32%), Gaps = 16/229 (6%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ +K S + + II G+++ L+ L + I+ DPPYN G +
Sbjct: 24 LERKYSFDESGMHKEDIHSNNMIIHGDNLEALKSLLPQYEGKIKCIYIDPPYNTGNEGWI 83
Query: 58 YRPDHSL-------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
Y + + + V + S + + L+ +++L +G +++ +
Sbjct: 84 YNDNVNDPKIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLVLLQKLLADDGAIFISIDDNE 143
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG---YTF 166
+ + + R + ++ + ++ S S
Sbjct: 144 KDYLKLICNEIFGANYYMGTIVRATGQTTGQDSSGLGSSFDYVLVYSKSCDYIFGGLPLT 203
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP--EALL 213
+D + NED + + +GS R + P E L
Sbjct: 204 EHDLKRFKNEDDRGNYAYDQLRKTGSNDRREDRPNMYYAIINPDGEELY 252
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 13/187 (6%)
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
L+ G+ N++ ++ + + + + +
Sbjct: 220 AYDQLRKTGSNDRREDRPNMYY--AIINPDGEELYPTATAGYDSRWRVEKKTYNKLVEDD 277
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG----EKLHPTQ 207
LI+ + + + A + S I + R+ +
Sbjct: 278 LIFWKKTKRNNEEVWWPYVKYYAEGRTKRPSPLWTEIEGNKKASRDVKSILGVDCKFDYP 337
Query: 208 KPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDI 260
KP ++ RIL ++ DI+LD F GSGT+ + R FI +EM I
Sbjct: 338 KPIEMIDRILKIASVGKEDIVLDSFAGSGTTAHAVLNMNKSDGGNRKFILVEMGDYADTI 397
Query: 261 ATKRIAS 267
+R+
Sbjct: 398 TAERVKR 404
>gi|188990456|ref|YP_001902466.1| restriction-modification system DNA-methyltransferase [Xanthomonas
campestris pv. campestris str. B100]
gi|167732216|emb|CAP50408.1| restriction-modification system DNA-methyltransferase [Xanthomonas
campestris pv. campestris]
Length = 505
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 17/150 (11%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L + V IF DPPYN + + +D
Sbjct: 39 NMLIEGDNLDALKALLPYYSGQVKCIFIDPPYNTKSAFE--------------QYDDNVE 84
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + L R L +G++W+ + + ++ +
Sbjct: 85 HAKWLSMMYPRLELLREFLSKSGSIWITIDDNEGHYLKVIMDEIFGRKNFVATCIWQKRY 144
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ H+ ++ + P A N
Sbjct: 145 SRENREAIGDVHDYILVYANDPDAFKKARN 174
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 57/178 (32%), Gaps = 18/178 (10%)
Query: 108 YHNIF----RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL-IWASPSPKAK 162
Y N+ R + + ++ P T+
Sbjct: 186 YRNVDKATGRRWRPIPMTAQGYRANQMYEIEAPGGAIHTPPEGRCWSTIEPEYLKMKAEG 245
Query: 163 GYTFNYDALKAANEDVQMR---SDWLIPICSGSERLRNKDGEK----------LHPTQKP 209
F D N + E + K T KP
Sbjct: 246 RIYFGKDNNSQPNIIRFLDQSEGVVPWTWWPSEEVGHTDEAAKEQHQLMGKGDTFATPKP 305
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
E LL RI+ +T PGDI+LD F GSGT+ AVA K+RR +IGIEM R+
Sbjct: 306 ERLLKRIIEIATDPGDIVLDSFLGSGTTAAVAHKMRRRWIGIEMGSHARSHCQLRLQK 363
>gi|261400318|ref|ZP_05986443.1| type III restriction/modification enzyme, methylase subunit
[Neisseria lactamica ATCC 23970]
gi|269209938|gb|EEZ76393.1| type III restriction/modification enzyme, methylase subunit
[Neisseria lactamica ATCC 23970]
Length = 701
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 17/173 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + + ++ IIKGN++ L L V LI+ DPPYN +G Y
Sbjct: 206 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN- 264
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF + + F + L + +L +G+++V + + ++
Sbjct: 265 ------------DKF-NRSTWLTFMKNRLEIAKELLMEDGSIFVSIDDNEQAYLKILMDE 311
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+ + ++ E ++ S + K N +
Sbjct: 312 VFGNENFICNFIWEKKTGASDAKQIATITEFVLCYSKNFKTVKLNKNTSSYDT 364
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 10/194 (5%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F + L G + N + V +
Sbjct: 371 DKFEQERGKYYIDNLDRGGLQY--SDSLNFAIQCPDGTFTYPNGRTEFVNDGWIWKWSKN 428
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--------DWLIPICSGSE 193
+ + L + K G++ Y + + + I ++
Sbjct: 429 KIDWAITNGFLEFRKSKSKKSGWSVCYKNYMLVDNENKPIERSAPYKNLIQDILNTHATD 488
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
L+ G K+ T KPE+LL ++ +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 489 ELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIEQ 548
Query: 254 KQDYIDIATKRIAS 267
+A +R+
Sbjct: 549 MDYIETLAVERLKK 562
>gi|74318294|ref|YP_316034.1| adenine specific DNA methylase [Thiobacillus denitrificans ATCC
25259]
gi|74057789|gb|AAZ98229.1| adenine specific DNA methylase [Thiobacillus denitrificans ATCC
25259]
Length = 559
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 21/204 (10%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP--DHSLVD-----AVTD 70
++II G+++ L+ L V I+ DPPYN G +Y + + V
Sbjct: 66 NRIIHGDNLEALKSLLPEFEGRVKCIYIDPPYNTGNEGWVYNDAVNDPKIKRWLGQVVGK 125
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW-ILNDI 129
+ S + + L R+L +G++WV + + +L +
Sbjct: 126 EGEDLSRHDKWLCMMYPRLKLLHRLLHDDGSIWVSIDDNASGLLRPLLDEIFGGANFVAT 185
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
V + P R+F H+ ++ S P A NE+ SD +
Sbjct: 186 VIWEKADSPRNSARQFSTDHDYILVYSKKPGWTP------ARLPRNEE----SDAIYQNQ 235
Query: 190 SGSERLRNKDGEKLHPTQKPEALL 213
ER G+ + L
Sbjct: 236 DDDERGPWIPGDPFANKPYSKGLY 259
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------ 245
+E+ G T KP AL+ R++ + DI+LD F GSGT+G KL
Sbjct: 334 NEQRAIFAGTASFDTPKPSALIERVIQIAASSSDIVLDSFAGSGTTGHAVMKLNAQDSGA 393
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R F+ IE + + +RI
Sbjct: 394 RRFVMIETESYADTLTAERIRR 415
>gi|229828985|ref|ZP_04455054.1| hypothetical protein GCWU000342_01070 [Shuttleworthia satelles DSM
14600]
gi|229792148|gb|EEP28262.1| hypothetical protein GCWU000342_01070 [Shuttleworthia satelles DSM
14600]
Length = 621
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 22/219 (10%)
Query: 13 QNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ W ++ I+G+++ VL+ L V +I+ DPPYN + V
Sbjct: 87 KEESVNWDSTENLYIEGDNLEVLKLLQESYLSKVKMIYIDPPYNTGNDFIYRDDFKQSVA 146
Query: 67 AVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ + + + + L+ R +L +G +++ +
Sbjct: 147 DYDEDSGVYDEDGNRMFKNTDTNGRFHSDWCSMIYSRLMLARNLLTDDGVIFISIDDNEQ 206
Query: 112 FRIGTML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + + P + N+H+ ++ + +
Sbjct: 207 ENLKKCCSEVFGGQNFVAQLVWERAYAPKNDAKFISNSHDYVLMYAKNITRFVIGRLPRT 266
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
++A +D ++ +P P
Sbjct: 267 VEANARYQNPDNDPRGVWKPSDMSVKTYTASCDYPITAP 305
Score = 43.5 bits (101), Expect = 0.051, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSG 238
M + G++ + N + KP LL R+L + GD ++LD F GSGT+
Sbjct: 364 MFYKDVGHSQEGAKEVTNIMDAGVFDGPKPVRLLIRLLTLANLKGDSVVLDFFSGSGTTA 423
Query: 239 AVAKKLR 245
+
Sbjct: 424 HALMQYN 430
>gi|206561831|ref|YP_002232596.1| type III restriction-modification system methylase [Burkholderia
cenocepacia J2315]
gi|198037873|emb|CAR53817.1| type III restriction-modification system methylase [Burkholderia
cenocepacia J2315]
Length = 668
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 94 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 153
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ V T++ + L +L G + V H + + ML
Sbjct: 154 GQTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 213
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 214 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 253
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L G ++ V
Sbjct: 267 KRNAQRMLDAAHDAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSAEGRVYRLVSM 326
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N F L V K MP R + L+ T
Sbjct: 327 AWPN----KKKAPEEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 382
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 383 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDI 441
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 442 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 474
>gi|254246629|ref|ZP_04939950.1| Adenine specific DNA methylase Mod [Burkholderia cenocepacia PC184]
gi|124871405|gb|EAY63121.1| Adenine specific DNA methylase Mod [Burkholderia cenocepacia PC184]
Length = 672
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 98 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 157
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ V T++ + L +L G + V H + + ML
Sbjct: 158 GQTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 218 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 257
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L P G ++ V
Sbjct: 271 KRNAQRMLDAAHDAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSPEGRVYRLVSM 330
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 331 AWPN----KKKAPDEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 386
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 387 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDI 445
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 446 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 478
>gi|107021604|ref|YP_619931.1| site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia cenocepacia AU 1054]
gi|116688052|ref|YP_833675.1| site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia cenocepacia HI2424]
gi|105891793|gb|ABF74958.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia cenocepacia AU 1054]
gi|116646141|gb|ABK06782.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia cenocepacia HI2424]
Length = 672
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 98 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMT 157
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ V T++ + L +L G + V H + + ML
Sbjct: 158 GQTEAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLML 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 218 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARN 257
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L P G ++ V
Sbjct: 271 KRNAQRMLDAAHDAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSPEGRVYRLVSM 330
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 331 AWPN----KKKAPDEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 386
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 387 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDI 445
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 446 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 478
>gi|332672404|ref|YP_004421648.1| possible methylase [Campylobacter phage NCTC12673]
gi|327493581|gb|AEA86440.1| possible methylase [Campylobacter phage NCTC12673]
Length = 392
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 18/164 (10%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD------AVTD 70
K+ +IKG+++ V+ + V LI+ DPPYN Y +D V +
Sbjct: 5 KNYLIKGDNLEVMNSILPFYKGKVKLIYIDPPYNTGNKNFHYNDSFESIDLIIKYFNVDE 64
Query: 71 SW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
DKF + + F + L R LK +G ++V + + ++ +
Sbjct: 65 EEAKKIKSQDKFIGSKVWLKFMKERLEVAREFLKDDGVIFVQCDDNEQAYLKVLMDEIF- 123
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ V M +G + N H+ L N
Sbjct: 124 -GRENFVNCIVVKMNESKGLKNANCHKKLPKNKEYILLYKKQDN 166
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
QKPE LL IL ST D+++D F GSGT+ AVA K++R +IGIE I +R+
Sbjct: 299 QKPEYLLKIILDLSTNENDLVMDFFAGSGTTLAVAHKMKRKWIGIEQMDYIETITKERLK 358
Query: 267 S 267
Sbjct: 359 K 359
>gi|33594038|ref|NP_881682.1| putative modification methylase [Bordetella pertussis Tohama I]
gi|33564112|emb|CAE43384.1| putative modification methylase [Bordetella pertussis Tohama I]
gi|332383455|gb|AEE68302.1| putative modification methylase [Bordetella pertussis CS]
Length = 983
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 24/168 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W++++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 161 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGH 220
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L+ R +L +G+++V N+ R+ +
Sbjct: 221 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRAL 278
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
L + F N + + G +TL+W + + KA Y
Sbjct: 279 LDEV-FGDDNCVSTIVFAKTSSSTGDFIGPTFDTLLWYARNKKAVKYR 325
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
GEK++ Q +++ R + +T PGD++LDP GSGT+ VA++ R +I I+ + +
Sbjct: 464 GEKIYVVQTSISVVQRCFLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALA 523
Query: 260 IATKRI 265
+A RI
Sbjct: 524 LARARI 529
>gi|303240592|ref|ZP_07327107.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
cellulolyticus CD2]
gi|302591829|gb|EFL61562.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
cellulolyticus CD2]
Length = 512
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 19/182 (10%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---- 54
S K I E+ ++ I+G+++ VL+ L + I+ DPPYN +
Sbjct: 80 SDKVLRPIKEDSVDWENTQNLYIEGDNLEVLKLLQESYMNKIKCIYIDPPYNTGKDFIYK 139
Query: 55 ----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
R D + DS + L R +L+ +G ++V
Sbjct: 140 DDFSMGTTQYFAKCRQDENCNRLSEDSEVHGRFHSGWLTMMYPRLKLARNLLQDDGVIFV 199
Query: 105 IGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ ++ + M+ + + +W K+ P+ + + A L + K
Sbjct: 200 SIDNNELYNLQWMMNEIFGESNYVETFIWTKTCTPPSLSNKSRKTAEYVLCYEKNINNIK 259
Query: 163 GY 164
Y
Sbjct: 260 YY 261
Score = 36.6 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 202 KLHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
+ KP +L+ +I+ K I+LD F GS T+ ++ R +I ++
Sbjct: 401 RCFDYPKPVSLIKKIINMIVKDEKEAIVLDFFSGSATTAHAVMEINAYDAGRRKYIMVQ 459
>gi|326346321|gb|EGD70058.1| putative DNA methylase [Escherichia coli O157:H7 str. 1125]
Length = 240
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + E Y
Sbjct: 12 LINADCLEFMRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---AGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
>gi|55378613|ref|YP_136463.1| CTAG modification methylase [Haloarcula marismortui ATCC 43049]
gi|55231338|gb|AAV46757.1| CTAG modification methylase [Haloarcula marismortui ATCC 43049]
Length = 342
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/264 (22%), Positives = 92/264 (34%), Gaps = 29/264 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKF 75
E ++ G++ ++ P SV+L+ PPY +++ ++ + DS D
Sbjct: 1 METTHRVRTGDARTL--ACPDDSVELVITSPPYPMIEMWDDIFTALDPDIGTALDSDDGD 58
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLNF 123
+F A RVL P G + SY N I L +
Sbjct: 59 RAFTLMHDVLDAVWAEIERVLVPGGIACINVGDATRSLSDGFRSYPNHAEITDRLTDHGL 118
Query: 124 WILNDIVWR---KSNPMPNFRGRRFQNAHETLIWAS--------PSPKAKGYTFNYDALK 172
L DI+WR S G NA+ TL G Y++
Sbjct: 119 RALPDILWRKPTNSGAKFMGSGMVPPNAYPTLEHEHILVFRNGERRRLEPGADRRYESAY 178
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
E + SD E DG + P + R++ + GD +LDPF
Sbjct: 179 FWEERNEWFSDLWELP---GETQDLDDGLRDRSGAFPLTVPYRLISMFSVYGDTVLDPFL 235
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQD 256
G+GT+ A R+ IG++ D
Sbjct: 236 GTGTTTLAAMVAGRNSIGVDRDPD 259
>gi|115375277|ref|ZP_01462542.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
gi|310820222|ref|YP_003952580.1| modification methylase [Stigmatella aurantiaca DW4/3-1]
gi|115367744|gb|EAU66714.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
gi|309393294|gb|ADO70753.1| Modification methylase [Stigmatella aurantiaca DW4/3-1]
Length = 254
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/253 (20%), Positives = 91/253 (35%), Gaps = 20/253 (7%)
Query: 27 NSIS---VLEKLPAKSVDLIFADPPYNL---QLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++ L L L+ DPPY L + G R + + +F + +
Sbjct: 16 DAREPGGYLSALGDSRAHLLLTDPPYCLLTRRRKGGDERDPRAHKKIDRNPIVRFETVKD 75
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y FT AW+ L P L + + I T+ + L + L
Sbjct: 76 YRVFTEAWMTRAVSWLTPEARLVIWTNLLGKEPITTVARQLGYTHLLGEYVWGKRTTDKN 135
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+ +E + S +P + A D G+
Sbjct: 136 ANEQLLRVYEVALVFSRTPLPPLGPGEAPTVWAVVGG---YDDDAEAQQWGN-------- 184
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
HP KP ++L ++ + ++PG+ ILDPF GSG++ A A +L R +E++ ++ +
Sbjct: 185 ---HPHHKPFSVLEPLVRTYSRPGETILDPFAGSGSTPAAALRLERRPACMEIEPEWAER 241
Query: 261 ATKRIASVQPLGN 273
T R+ V
Sbjct: 242 VTHRLRGVAGHSR 254
>gi|257440144|ref|ZP_05615899.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
gi|257197496|gb|EEU95780.1| DNA (cytosine-5-)-methyltransferase [Faecalibacterium prausnitzii
A2-165]
Length = 276
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 54/267 (20%), Positives = 90/267 (33%), Gaps = 74/267 (27%)
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV--------------IGSYHNI------- 111
+ ++ + Y + RRVL+P+GTLW+ N
Sbjct: 6 GRETTPKEYISRLTEVFTEVRRVLRPDGTLWLNISDTYAGKGNQGDFIDPKNPNGRNGQA 65
Query: 112 -------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ + L++ +++ NDI+W K NPMP R +E +
Sbjct: 66 VALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKENPMPESVKDRLSRCYEHI 125
Query: 153 IWASPSPKAK----------------------------------GYTFNYDALKAANEDV 178
S S K + ++
Sbjct: 126 FLFSKSKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPREHGEI 185
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + ++ + H P L+ L++ G I+LDPF GSGT+G
Sbjct: 186 KDADINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGIVLDPFMGSGTTG 245
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
VA ++ R FIGIE+ Y ++A KRI
Sbjct: 246 MVASQMGRHFIGIELNPAYTELAYKRI 272
>gi|227515538|ref|ZP_03945587.1| site-specific DNA-methyltransferase (adenine-specific)
[Lactobacillus fermentum ATCC 14931]
gi|227086151|gb|EEI21463.1| site-specific DNA-methyltransferase (adenine-specific)
[Lactobacillus fermentum ATCC 14931]
Length = 643
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 18/196 (9%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG----QLYRP 60
+NQ K+ G+++ VL L ++ IF DPPYN N +
Sbjct: 82 DEKQNQGEGKNSKNLFFTGDNLEVLRHLEVGYLNKINTIFIDPPYNTGSNDFEYPDSFEY 141
Query: 61 DHSLVDAVTDSWDK----------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ + + D+ SS A+ F L+ +R+L GT+++ +
Sbjct: 142 SDNKIKEMFGLEDEQVERLKSIQGSSSHSAWLTFMYPRLVLAKRMLSSKGTIFISIDDNE 201
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA-KGYTFNYD 169
+ + + + + H ++ + + + Y
Sbjct: 202 FSNLKNICDEIFGEANYVDTFIWESRTSISNDSPISLNHNYILVYAKDIQQLQWYGDPLS 261
Query: 170 ALKAANEDVQMRSDWL 185
+ + N D R W
Sbjct: 262 SREYKNPDNDPRGPWK 277
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 14/194 (7%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI--PI 188
N G + + + + + + S
Sbjct: 306 PHNRIWAFNRDGIKKLMDDGRIKFGMNNDSSPKRKLFLKERILKGDSKTPSSILRNVGTT 365
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
G+ + EK KP +L+ +++ ++K +I++D F GS T+ +L
Sbjct: 366 KDGTNEIIKLFNEKCFSYPKPTSLVKKLIKYTSKDSEIVMDFFAGSATTADAVMQLN--- 422
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
D A +R VQ GK T P + + G +I
Sbjct: 423 --------AEDTANRRFIMVQLPEKTYHRNKDGK-TVPVKGAKVAYDAGFKSIDEISRER 473
Query: 309 QGNISATVCADGTL 322
+ + D L
Sbjct: 474 IRRAAKKIRDDNEL 487
>gi|301299743|ref|ZP_07205993.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852674|gb|EFK80308.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 634
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 73/426 (17%), Positives = 126/426 (29%), Gaps = 121/426 (28%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLN---------- 54
+N + K+ G+++ VL L +D+I+ DPPYN
Sbjct: 82 DEEQNNGEGKDSKNLFFTGDNLEVLRHLQNNYAGKIDVIYIDPPYNTGNKDFVYPDKFEY 141
Query: 55 -----GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+++ D V+ + K SS A+ F L + +L G ++V +
Sbjct: 142 SDGKLKEMFGMDDVQVERLKSIQGK-SSHSAWLTFMYPRLYLAKNLLSKKGVIFVSIDDN 200
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPN----FRGRRFQNAHETLIWASPSPKAKGYT 165
+ +L ++ I D + +++ HE ++ A + K +
Sbjct: 201 EYANLYEILTDIYGEIQVDTLIWNKESEGKSGTLKAVSQYRRIHEYIVVAYVNKKDNKFN 260
Query: 166 FNYD--------------ALKAANEDVQMRSDWLIPICSGSERLR--------------- 196
++ A+ +NED+ + + + +G + R
Sbjct: 261 KIHEALEGRENEFNTANLAVNGSNEDINHSNYFTLTSPNGKKYTRQWKWSKEKINELINE 320
Query: 197 -----NKDGEKLHPTQKP-------------------------EALLSRILVSSTKP--- 223
KDGEK P E L S+ + S KP
Sbjct: 321 DLIYWGKDGEKQPRLILPMDERRTVYLSSILNYGSTTSGREDFEKLFSKDIFSYPKPIKL 380
Query: 224 -----------GDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIA 266
IILD F GS T+ +L R +I I++
Sbjct: 381 LKKILEATTSKESIILDFFAGSSTTAEAVMQLNAKDSGSRRYIMIQI------------- 427
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS-G 325
TV + P E G +I +A + AD L
Sbjct: 428 -----PESTFTVNSNGEKIPAEGGKTAYEAGFKSIDEISRERIRRAAAKIKADNDLTLPK 482
Query: 326 TELGSI 331
GS
Sbjct: 483 DFDGSF 488
>gi|135253|sp|P12364|T3MO_ECOLX RecName: Full=Type III restriction-modification system EcoP15I
enzyme mod; Short=M.EcoP15I; AltName: Full=EcoP15I
methyltransferase
gi|42237|emb|CAA29616.1| unnamed protein product [Escherichia coli]
Length = 645
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 23/197 (11%)
Query: 1 MSQKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ K LA ++ N E K+ +IKG+++ VL+ + + V +I+ DPPYN +
Sbjct: 72 LPPKTLLAEDKTHNQQEENKNSQHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKD 131
Query: 55 GQLYRPDH-------SLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKP 98
G +Y D S + + K SS A+ F L R +++
Sbjct: 132 GFVYNDDRKFTPEQLSELAGIDLDQAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMRE 191
Query: 99 NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+GT+++ ++ ++ + + + N N HE +I + +
Sbjct: 192 DGTIFISIDHNEFSQLKLVCDEIFGEQNHVGDLVWKNATDN-NPSNIAVEHEYIIVYTKN 250
Query: 159 PKAKGYTFNYDALKAAN 175
+ + + N
Sbjct: 251 KEQLISEWKSNISDVKN 267
>gi|294341862|emb|CAZ90291.1| putative DNA methylase N-4/N-6 [Thiomonas sp. 3As]
Length = 519
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L A V IF DPPYN Q S + D +
Sbjct: 36 NLLIQGDNLLALKALIPFYAGRVKCIFIDPPYNTQ----------SAFEHYDDKLE---- 81
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSN 135
+ + L+ R +L +G++WV + + ++ + + DI W++ +
Sbjct: 82 HSQWLSMMYPRLVLLRELLTEDGSIWVTIDDNEAHYLKVLMDEVFGRGSFIADIAWKRRD 141
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG 163
PN R + H + +K
Sbjct: 142 GAPNDRKIGAIHDHIFAFSKTRFANSKK 169
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ T KPEAL+ RI+ ++ PGD++LD F GSGT+ AVA K+ R +IGIEM +
Sbjct: 308 EKASFETPKPEALIQRIIHIASNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHART 367
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
R+ + G +E R G+ +A G+I+A V
Sbjct: 368 HCIPRL-------QKVIDGEQGGISEAVGWKGGGGFR-FYTLGETAFDAHGHINAAVR 417
>gi|15828867|ref|NP_326227.1| type III restriction-modification system: methylase [Mycoplasma
pulmonis UAB CTIP]
gi|14089810|emb|CAC13569.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
pulmonis]
Length = 573
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 21/177 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E E + IIKGN++ L L V LI+ DPPYN +
Sbjct: 164 EENIEFNENDNLIIKGNNLIALSSLLERYEGKVKLIYIDPPYNTGND------------- 210
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--I 125
+ +++ + + F + L R++LK +G ++V + + + ++ + +
Sbjct: 211 -SFNYNDSFNHSTWLTFMKNRLELARKLLKEDGVIFVQCDKNEMAYLKIIMDEIFYRENE 269
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK--AKGYTFNYDALKAANEDVQM 180
L+ I+W + F+ HE ++ + + K + D + ED +
Sbjct: 270 LSTIIWLNKEGGGKSDSKFFRQKHEYILCFAKNYKNASIYPQEVQDKDRYKEEDKYL 326
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 13/170 (7%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ I G + + N N + ++ + E L W + N
Sbjct: 349 DYPIKHNGKTYYAGGNKRKWE---NRQNGGSNIKDWGWRWSKEKLDWGIKNDFIVFKNDN 405
Query: 168 YDALKAANEDV----------QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
+ N D + ++ ++ + KPE ++ IL
Sbjct: 406 VYTKQYLNCDKDGNIIERKIQPLPIIEKYSNTQSNKHMKELFSKVPFNYSKPEGIIFEIL 465
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+TK D++LD GSGT+ AVA K+ R +IGIE DI +R+
Sbjct: 466 NWTTKKNDLVLDFHLGSGTTTAVAHKMSRKYIGIEQMDYIQDITIERMKK 515
>gi|22001112|gb|AAM88315.1|AF479829_4 unknown [Escherichia coli]
Length = 352
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + E Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---TGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|323159624|gb|EFZ45604.1| DNA methylase family protein [Escherichia coli E128010]
Length = 352
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD+I D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLIADFFMGSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ + +
Sbjct: 325 RRAIGVELETERFEQT 340
>gi|319944299|ref|ZP_08018573.1| type III restriction-modification system StyLTI enzyme mod
[Lautropia mirabilis ATCC 51599]
gi|319742260|gb|EFV94673.1| type III restriction-modification system StyLTI enzyme mod
[Lautropia mirabilis ATCC 51599]
Length = 536
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 67/193 (34%), Gaps = 19/193 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL-------VDAVTD 70
+ I++G+++ L+ L A V I+ DPPYN G +Y + + + V
Sbjct: 39 NLIVQGDNLHALKALLPRYAGQVKCIYIDPPYNTGNEGWVYNDNVNSPEIRKWLGEVVGK 98
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ + + + L+ ++ L+ +G +++ + + + ++ +
Sbjct: 99 EGETLDRHDRWLSMMYPRLVLLKQFLREDGAIFISIDDNEVATLRLLMDEI------FEA 152
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA-ANEDVQMRSDWLIPIC 189
+ + N H+T+ A Y + + + + +
Sbjct: 153 RNFVGTVIWQKKYAVSNDHKTI--APMHDFVLVYQRSPSWQRNLLPRGKEKDNQYRNEDE 210
Query: 190 SGSERLRNKDGEK 202
G R+ + K
Sbjct: 211 KGKFRISDYTCAK 223
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--------ERLRNKDGEKL 203
LI+ K K + N+ V ++ W + E L +
Sbjct: 267 LIYWGKDGKGKVPAYKRYKHSLRNDGVVPQTLWPHEFAGHTDGSRKELREVLHDIPSVSD 326
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD- 256
T KP L+ R+L +T +ILD F GSGT+G K R FI +EM
Sbjct: 327 FATPKPSLLIQRVLQIATDKDSLILDSFAGSGTTGHAVLKQNAEDGGKRRFILVEMDTGI 386
Query: 257 YIDIATKRIASVQ 269
++ +RI V
Sbjct: 387 ANNVTRERIKRVA 399
>gi|315269866|gb|ADT96718.1| Site-specific DNA-methyltransferase (adenine-specific) [Shewanella
baltica OS678]
Length = 631
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 65/172 (37%), Gaps = 23/172 (13%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP------- 60
E + K+ I+G+++ VL+ L K V +I+ DPPYN +
Sbjct: 92 EESVNWNTTKNLFIEGDNLEVLKLLQKSYHKQVKMIYIDPPYNTGKDFVYKDNFYDNIQN 151
Query: 61 ----------DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ + + A +D+ +F S ++ L R +L+ +G +++ +
Sbjct: 152 YLVQTGQVDGEGNKLSANSDTSGRFHS--SWLNMIYPRLKLARNLLRDDGVIFISIDDNE 209
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-QNAHETLIWASPSPKA 161
+ + + + + + P+ +G N + ++ + S +
Sbjct: 210 LANLLEVCDEIFGSDNRRGIVSRPTGTPSGQGYDILVNEIDYVLVYAKSKMS 261
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ ++++ R R +++ L+ + K K
Sbjct: 302 RPTMYFGIKDPDGNLIYPLGPSGYESRWRCGEDSFFNLVAENRIQWKKSNGEWKPYQKFY 361
Query: 175 NEDVQMRSDWLIPICSGSER----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
E ++ L G+++ ++ K T KP L++R + +T D+ILD
Sbjct: 362 LEGRLKQASNLWQGIEGNKKASLTIKELFDGKAFDTPKPVGLINRCIQIATTKQDVILDF 421
Query: 231 FFGSGTSGAVAKKL------RRSFIGIEM 253
F GS T+ R FI +++
Sbjct: 422 FAGSATTAHAVINSNVEDNGNRKFIMVQL 450
>gi|330824386|ref|YP_004387689.1| DNA methylase N-4/N-6 domain-containing protein [Alicycliphilus
denitrificans K601]
gi|329309758|gb|AEB84173.1| DNA methylase N-4/N-6 domain protein [Alicycliphilus denitrificans
K601]
Length = 568
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 23/199 (11%)
Query: 19 WKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L + V +F DPPYN +D
Sbjct: 44 FDNRLIFGDNLLALKALENEFSGEVKCVFIDPPYNTGSAFA--------------QYDDG 89
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
+ R L RR+L G+LW+ + F + + +
Sbjct: 90 LEHSIWLGLMRDRLELIRRLLSDEGSLWITIDDNEAFYLKVLCDEVFGRSNFVSSIVWAK 149
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKG----YTFNYDALKAANEDVQMRSDWLIPICS 190
P + F + H+ ++ + + N D R W +
Sbjct: 150 RVSPANDAKYFSSDHDFVLVYAKNKPLWKPNRLPRTEGQNSYYKNPDNDSRGPWNSVTYT 209
Query: 191 GSERLRNKDGEKLHPTQKP 209
G++ R + +P P
Sbjct: 210 GNK-TREERPNLYYPIVNP 227
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 41/71 (57%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
T KPEALL RIL ++K GDI+LD F GSGT+G VA K+ R +I +E+ +
Sbjct: 309 FATPKPEALLQRILHIASKEGDIVLDSFAGSGTTGVVAHKMGRRWIMVELGEHCQTHIIP 368
Query: 264 RIASVQPLGNI 274
RI V +
Sbjct: 369 RIKKVIDGEDK 379
>gi|302188328|ref|ZP_07265001.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
pv. syringae 642]
Length = 432
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 34/172 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD--------------------- 61
+ G+ + V+ LPA SVD + DPPY ++ G+ +
Sbjct: 5 LHLGDCLEVMRSLPADSVDSVVTDPPYGIRFMGKSWDGKDIEDRATYRASMPSNDGACGP 64
Query: 62 ---HSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
H V A +D + +A+ AFT W C RVLKP G L + +
Sbjct: 65 NGGHRSVAAEAGKYDLTPAGMKAFQAFTLDWATECLRVLKPGGHLLSFAAARTYHHMAVG 124
Query: 118 LQNLNFWILNDIVWRKSNPMPNF---------RGRRFQNAHETLIWASPSPK 160
++ F I + I+W + P G + AHE + A
Sbjct: 125 IEMAGFEIRDQIMWVFGSGFPKSHNLKGEHVGWGTALKPAHEPICMARKPFP 176
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 36/66 (54%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP L++ +L T G LDPF GSG++G A FIGIE Y+ IA
Sbjct: 345 HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVFEGFDFIGIEQDVAYMAIANA 404
Query: 264 RIASVQ 269
RIA +
Sbjct: 405 RIAHAR 410
>gi|170730167|ref|YP_001775600.1| methyltransferase [Xylella fastidiosa M12]
gi|167964960|gb|ACA11970.1| methyltransferase [Xylella fastidiosa M12]
Length = 526
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/272 (18%), Positives = 85/272 (31%), Gaps = 57/272 (20%)
Query: 19 WKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W + II+G++ L L ++ I+ DPPYN +Y D D W
Sbjct: 61 WLNLIIEGDNFDALRALCMTHRSAIRCIYIDPPYNTGNRDFVY------NDCFIDKW--- 111
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
F L + +L +G ++V + +FR+G ++ + + ++
Sbjct: 112 ------LEFIYRRLQLAKELLPDDGVIFVSIDDNELFRLGMLMDRVFGEQNFVANFIWNH 165
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG-YTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ AH + + + DA K N D R W+
Sbjct: 166 RKSSQNDTDVSLAHNYTLCYARTRDRFSLNPLPVDADKFNNTDGDQRGPWVADPFDAPNI 225
Query: 195 LRN--------KDGEKL----------------------------HPTQKPEALLSRILV 218
+N K G++ H T KP+ R L
Sbjct: 226 RKNLTYPIKNPKSGKEFLPPQGRHWRFTEDRYLEALKEGRIVFGKHGTGKPQ--YKRFLF 283
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+ G I + GT+ K+L F G
Sbjct: 284 EAAGKGKNIFTIWNDVGTATEATKELMAIFDG 315
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------ 245
E + DGEK+ T KP +L+ RIL +T +LD F GSGT+ KL
Sbjct: 307 KELMAIFDGEKMFNTPKPVSLIERILSVTTDKEAWVLDFFAGSGTTAHAVAKLNAEDGGH 366
Query: 246 RSFIGIEM 253
R FI I
Sbjct: 367 RRFILISN 374
>gi|295426562|ref|ZP_06819211.1| type III restriction-modification system methyltransferase
[Lactobacillus amylolyticus DSM 11664]
gi|295063741|gb|EFG54700.1| type III restriction-modification system methyltransferase
[Lactobacillus amylolyticus DSM 11664]
Length = 633
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 18/170 (10%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS 63
+ + K+ I+G+++ L+ + + V +I+ DPPYN + H
Sbjct: 82 IMDKDKSKDWENTKNVYIEGDNLEALKLMQKAYGEKVKIIYIDPPYNTGHDFVYKDNYHD 141
Query: 64 LVDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
++ + + L R +L +G +++
Sbjct: 142 SYQNYLETTGQLDDEGNITTTNKESNGRYHTDWLNMMYPRLKLARNLLTKDGVIFISIDD 201
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ R+ M + + + + G + E ++ + +
Sbjct: 202 NEHDRLKIMCDEIFGESNFQADFIWKSTAGSNTGSAIKTVTEYIVCYAKN 251
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 13/135 (9%)
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ + + + ++ + + N+ + + G
Sbjct: 321 NWNWRWSKNKLQWGIDNKFIVMKKGKQGWSVYFKQYQKVDNEDNQINRTLPQQNLLDIDG 380
Query: 192 -------SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
E + +K+ KP LL ++ + ILD F GSG++ +
Sbjct: 381 VSSARGTKEVTDLFNNDKVFDYPKPINLLKHLIKIIAEKDITILDFFSGSGSTAQAVMEQ 440
Query: 245 R------RSFIGIEM 253
R FI +++
Sbjct: 441 NAEDGGHRKFIMVQL 455
>gi|170783324|ref|YP_001711658.1| putative restriction-modification system methyltransferase
[Clavibacter michiganensis subsp. sepedonicus]
gi|169157894|emb|CAQ03103.1| putative restriction-modification system methyltransferase
[Clavibacter michiganensis subsp. sepedonicus]
Length = 391
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/316 (19%), Positives = 98/316 (31%), Gaps = 79/316 (25%)
Query: 23 IIKGNSISVLEKL---PA--KSVDLIFADPPYNLQLNGQLYR------------------ 59
++ G++ S L L P +S+ L + DPPYN + Y
Sbjct: 51 LMVGDASSALRVLHADPERLESIKLCYLDPPYNTGETFRHYSDKRDSNEWISELRGHLTA 110
Query: 60 ------PDHSLVDAVTDS-----------------------WDK---------FSSFEAY 81
PD S+ + DS W K FSS Y
Sbjct: 111 LIPLLAPDASVWLHLDDSEQHRARVVMDEVFGREAFVSTIIWQKRKSRDNRKAFSSMHDY 170
Query: 82 DAFT----RAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
R L GT +R M N +
Sbjct: 171 IHVYALSGPKSWKRVRHGLPDQGTFANPDNDPRGPWRSAPMSVQAGHATQNQFYTVVTPS 230
Query: 137 MPNFR---GRRFQNAHETLIWASPSPKAKGY-----TFNYDALKAANEDVQMRSDWLIPI 188
GR + + L + ++ + + + W
Sbjct: 231 GARHDPPPGRCWTFSKMRLEELVRDGRVYWPRGGAGKPRLKRYESESGGLAPFTIWTADE 290
Query: 189 CSG-----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
E LR+ G + T KPE LL RI+ + PGD +LD + GSGT+ VA++
Sbjct: 291 VGDTASAKKELLRDFPGGPVFDTPKPEKLLERIIKIGSDPGDTVLDYYLGSGTTAVVAQR 350
Query: 244 LRRSFIGIEMKQDYID 259
L R++IG+E + ++
Sbjct: 351 LGRNWIGVEQNESVVE 366
>gi|54026003|ref|YP_120245.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
gi|54017511|dbj|BAD58881.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
Length = 221
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 43/246 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + + L + D++ DPPY + G D T D+ +
Sbjct: 12 TLYHGSCLDNDDWL---TADILVTDPPYGMSYTGHGGHKTLIAGDDTTTIRDQALT---- 64
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
W P+ V G++ L L + P
Sbjct: 65 -----RWFD-----HNPDNPALVFGTWRVPRPPNPKLV------LVWDKTDGTGPGMGDL 108
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
F ++HE + P+ + +M S + S +
Sbjct: 109 TCAFGSSHEEIYLWGKWPRGQH--------------RRMGSVLRTAVGMSS-----LSRK 149
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HPT KP L+ ++ + P +I DPF GSG++ A+ L R +G+E+++ Y ++
Sbjct: 150 IGHPTPKPIGLMETLIE-RSIPDGVIADPFAGSGSTLVAAQNLGRRAVGVELEERYCELI 208
Query: 262 TKRIAS 267
+R+
Sbjct: 209 ARRLDQ 214
>gi|319644069|ref|ZP_07998628.1| hypothetical protein HMPREF9011_04231 [Bacteroides sp. 3_1_40A]
gi|317384417|gb|EFV65385.1| hypothetical protein HMPREF9011_04231 [Bacteroides sp. 3_1_40A]
Length = 112
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
ED S IP K G HPTQKP AL+ ++ + T GD++LD GSG
Sbjct: 10 EDKYPTSVISIPKEH-------KTGAFYHPTQKPVALIEYLIRTYTNEGDVVLDNCIGSG 62
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
T+ A + R +IG E++ Y +IA +RI
Sbjct: 63 TTAIAAIRTGRHYIGFEIEPTYCEIAGRRIREE 95
>gi|209963444|ref|YP_002296359.1| type III restriction-modification system methyltransferase,
putative [Rhodospirillum centenum SW]
gi|209956910|gb|ACI97546.1| type III restriction-modification system methyltransferase,
putative [Rhodospirillum centenum SW]
Length = 554
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 17/148 (11%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L A V +F DPPYN S + D
Sbjct: 45 FDNRLIFGDNLLALKALEQEFAGKVKCVFIDPPYNTG----------SAFEHYED----G 90
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + R L RR+L +G+LW+ + + +L +
Sbjct: 91 VEHSLWLSLMRDRLEIIRRMLSDDGSLWITIDDNEAHYLKILLDEVFGRSSFIANIVWQK 150
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG 163
+AH+ ++ +PS +
Sbjct: 151 RTSRENRAAIGSAHDHILIYAPSGPQRW 178
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 177 DVQMRSDWLIPICSGSERLRNK----DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
+ + W ++ + + + + T KPE LL ++ +T PGD++LD F
Sbjct: 273 GLAPMTWWDAAFAGDNQAAKKEILGLFDDDIFGTPKPEKLLMNVIHIATNPGDLVLDSFA 332
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
GSGT+GAVA K+ R +I +E+ + R+ V +
Sbjct: 333 GSGTTGAVAHKMGRRWIMVELGEHCHTHIIPRLKKVIDGEDK 374
>gi|167585152|ref|ZP_02377540.1| putative modification methylase [Burkholderia ubonensis Bu]
Length = 963
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 27/184 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W++++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 142 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGH 201
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L+ R +L +G+++V N+ R+ +
Sbjct: 202 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRAV 259
Query: 118 LQN-LNFWILNDIVWRKSNPM---PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
L ++ K P + + + LIW + ++ Y Y A +A
Sbjct: 260 LDEVFGDENACGLIGYKKTTGAGSPAIGTQVIASVTDYLIWYAKDKRSVKYRQLYLAKEA 319
Query: 174 ANED 177
E
Sbjct: 320 GEEG 323
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
EK + Q + R L+ +T PGD++LDP GSGT+ VA++ R +I I+ + + +
Sbjct: 443 EKTYVVQSGIKAVQRCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALAL 502
Query: 261 ATKRI 265
A RI
Sbjct: 503 ARARI 507
>gi|296117835|ref|ZP_06836418.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium ammoniagenes
DSM 20306]
gi|295969066|gb|EFG82308.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium ammoniagenes
DSM 20306]
Length = 373
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 6/157 (3%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ + G+++ VL+ L SVD+I+ DPPYN + LYR D+ S D
Sbjct: 3 NALYAGDNLDVLKSLREITPASVDVIYIDPPYNTGRDF-LYR-DNYRNRREHKSTDHGQW 60
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ + L +L P G +++ + ++ + + K
Sbjct: 61 HAQWLSMMAPRLQLAWELLAPTGHIFISIGEDEVAQLRMLTDELFGQSNFANQFIWKKGG 120
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
R HE ++ + S ++ G+ +
Sbjct: 121 TGKNDSRFAVAEHEYVVAYARSAESPGFNIDPQGYTT 157
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ KP L+ ++ +LD F GSGT+ +L
Sbjct: 272 IFDFPKPVQLIKYLVGIGGPDNARVLDFFAGSGTTAQAVAELN 314
>gi|260844249|ref|YP_003222027.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
gi|257759396|dbj|BAI30893.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
Length = 352
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPKNSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ +F +LN I+W K + N
Sbjct: 58 KWLGQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMREHFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ RG + H+ + S ++ Y + K + + + ++
Sbjct: 221 KHQRGELEKPHHQLVCTYSEL--SRQYASLLEEYKFLRRYFSVSAAVPYTDVWTHKPVQF 278
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L R G+E++ +
Sbjct: 279 YPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRATGVELEAER 336
Query: 258 IDIA 261
+
Sbjct: 337 FEQT 340
>gi|219871906|ref|YP_002476281.1| Type III restriction-modification system EcoPI enzyme mod (M.EcoPI)
(EcoPI methyltransferase) [Haemophilus parasuis SH0165]
gi|219692110|gb|ACL33333.1| Type III restriction-modification system EcoPI enzyme mod (M.EcoPI)
(EcoPI methyltransferase) [Haemophilus parasuis SH0165]
Length = 640
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 79/230 (34%), Gaps = 23/230 (10%)
Query: 4 KNSLAINENQN---SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+N ++ N + + + ++ +I+G++++VL+ L K + +I+ DPPYN +G +
Sbjct: 61 ENRTLLSANHSHNANNLDSQNVLIQGDNLAVLKHLREAYRKQIKMIYIDPPYNTGSDGFV 120
Query: 58 YRPDHS-------LVDAVTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
Y+ D + ++ + K SS A+ F L R +LK +G
Sbjct: 121 YQDDRKYTPEQIAQITGESEEYAEYIHGFINAKASSHSAWLTFMYPRLKLARELLKDDGV 180
Query: 102 LWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ + ++ + + N N F HE +
Sbjct: 181 IFISIDDNEQAQLKLLCDEIFGEGNFVACLPTVMNLKGNNDEFAFAGTHEYTLVYCKDKT 240
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ + + + + + N EK P
Sbjct: 241 STTFNQLSIDEDDLEDWQEDEQGFYKQGANLKATGTNAPREKRPNLFFPI 290
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 27/146 (18%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ +G+ +L+ EK+ P KP LL + D++LD F GSGT+
Sbjct: 369 KTIFYKPEYSSGNGTTQLKQLFDEKVFPNPKPLELLVDFIQLGVNDNDLVLDFFAGSGTT 428
Query: 238 GAVAKK------LRRSFIGIEMK--------------QDYIDIATKR-------IASVQP 270
+ R FI +++ +I R I + P
Sbjct: 429 AHAVMQLNSEDNGNRKFICVQLDEPVKPKSEAEKAGFNTIFEITKARIQKSIEKIKAENP 488
Query: 271 LGNIELTVLTGKRTEPRVAFNLLVER 296
N L K F L +
Sbjct: 489 DFNGNLGFKEYKIVPTPDNFGTLADN 514
>gi|293190850|ref|ZP_06609012.1| type III restriction-modification system methyltransferase
[Actinomyces odontolyticus F0309]
gi|292820749|gb|EFF79711.1| type III restriction-modification system methyltransferase
[Actinomyces odontolyticus F0309]
Length = 623
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 56/173 (32%), Gaps = 21/173 (12%)
Query: 8 AINENQNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD 61
+ ++ + +W ++ I+G+++ VL+ L + +I+ DPPYN + +
Sbjct: 77 TLMPDKENSVDWDATQNVFIEGDNLEVLKVLQKHYYGKIKMIYIDPPYNTGKDFVYHDDF 136
Query: 62 HSLVDAV--------------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ A +++ + L R +L P+G +++
Sbjct: 137 RDGMSAYLEWTNQVNESGKVSSNTESDGRYHSNWLNMMYPRLKLARNLLVPDGLIFLSID 196
Query: 108 YHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+ + + + K + HE ++ +
Sbjct: 197 DSEVAHLKLLCNEVFGQANFVAELVWKKGGTGKNDSQFAVVEHEYILVYARRY 249
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 2/116 (1%)
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
++ PN R + + YT NY + + +
Sbjct: 307 HRNPQAPNAIWRWSREKVAECMDQLVFHNGNVYTKNYKKSGVKVRSLLAGETFGVTRTGK 366
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLR 245
E + KP L+ ++ +T+P DIILD F GSGT+ +L
Sbjct: 367 KEAEDALGVAGVFDFPKPARLIKFLVSIATEPHSHDIILDFFAGSGTTAHAVMQLN 422
>gi|170290286|ref|YP_001737102.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170174366|gb|ACB07419.1| DNA methylase N-4/N-6 domain protein [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 565
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 22/174 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
+ N+ NS W K+I G+ VL +LP +D + PPY +Q +
Sbjct: 5 EKIFRFNKIDNS---WVPKLILGDVREVLPRLPDNFIDCVITSPPYWMQRDY-------- 53
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIG 115
D + + E Y R LK T+++ Y + I
Sbjct: 54 ---GHPDQIGREGTPEEYVKTIADIFELIRPKLKRTATIFLNVGYKYLNERLILIPEMIA 110
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
++ F + N I+W K N MP R N +E +++ + Y FN +
Sbjct: 111 LEMERRGFLLRNKIIWWKPNAMPTPARNRLNNVYEPVLFFIRDDGKEVYYFNLE 164
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
R+ ++ +++ + + H + P L+ + P ++LDPF GSGT G V
Sbjct: 465 RNYEIMGEAGDIWKIKLEPYPEAHFSIFPTKLVETAMRMGCPPRGVVLDPFAGSGTVGEV 524
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
A +L R I IE+ ++ D+ KR
Sbjct: 525 AMRLNRKAILIELTPEFADLIRKRC 549
>gi|145634213|ref|ZP_01789924.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
PittAA]
gi|115289038|gb|ABI85528.1| M.Hin1056ModP-3 [Haemophilus influenzae]
gi|145268657|gb|EDK08650.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
PittAA]
Length = 681
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/303 (16%), Positives = 99/303 (32%), Gaps = 42/303 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L + LI+ DPPYN +G Y DKF
Sbjct: 206 ENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKYN-------------DKF- 251
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L + +L +G ++V + + ++ L + +
Sbjct: 252 NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDELFHHRETIVALTSTAS 311
Query: 137 MPN----FRGRRFQNAHETLIWASPSPK--------AKGYTFNYDALKAANEDVQMRSDW 184
N RG + E +++ S SPK + NY + +D
Sbjct: 312 GVNAVNVKRGEQMFKLKEYILFYSKSPKFRFNPLLIKSPFNSNYKYEVIFENGEYVITDL 371
Query: 185 LIPICSGS-ERLRNKDGEKLHPTQKP-----EALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + E + + + +K E + +++ S +++ G +
Sbjct: 372 KSKMNNTELEEYCLNNPKNIFSLEKNNSKAGEKI-KQVIEISKTNNKEVIEFENSFGKTI 430
Query: 239 AV------AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
V R + I+ I V + E V K +P
Sbjct: 431 LVYDGGVFIPLQERILTEENKNFYGVLISDLWIDEVFQTSSSEGGVTFKKGKKPEKLIKR 490
Query: 293 LVE 295
++E
Sbjct: 491 IIE 493
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KPE L+ RI+ +T DIILD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 482 KKPEKLIKRIIELTTNENDIILDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLK 541
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
V ++ + V L + A+ I A +DG
Sbjct: 542 KVIDSEQNGIS-----KAVNWQGGGEFVYAELAPFNET---AKQQILACEDSDG 587
>gi|99034523|ref|ZP_01314503.1| hypothetical protein Wendoof_01000687 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 198
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 25/211 (11%)
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E Y+ F K G +++ S + + + + I+W K++
Sbjct: 10 EKYELFLYDICSHVLAYTK--GAIYICASSSELATLQKVFEEAGGRWSTFIIWAKNHFTL 67
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+Q +ET+++ + + + + D
Sbjct: 68 G--RSDYQRQYETILYGWKNGNKREWHGGRNQSDLWFYDKPTY----------------- 108
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
LHPT KP L+ R +V+S++PGDI+LDPF GSG++ ++ R IE+ ++
Sbjct: 109 --NSLHPTMKPVELMERAIVNSSRPGDIVLDPFSGSGSTLIACERTGRICRTIELDPTFV 166
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
D+ KR G + TGK
Sbjct: 167 DVTIKR--WQVYTGREAILSNTGKTFAQIQE 195
>gi|282600720|ref|ZP_05979580.2| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile DSM
15176]
gi|282571522|gb|EFB77057.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile DSM
15176]
Length = 276
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/272 (18%), Positives = 90/272 (33%), Gaps = 74/272 (27%)
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN----------------- 110
+ + ++ + Y + RRVL+ +GTLW+ S
Sbjct: 1 MDAQIGRETTPKEYISRLTEVFTEVRRVLRSDGTLWLNISDTYAGKGNQGDFNDPKNPNG 60
Query: 111 -----------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ + L++ +++ NDI+W K NPMP R
Sbjct: 61 RNGQAVALNNKVEGCKPKDMIGIPWMLAFALRDTGWYLRNDIIWMKDNPMPESVKDRCAR 120
Query: 148 AHETLIWASPSPKAK----------------------------------GYTFNYDALKA 173
+E + S S K
Sbjct: 121 CYEHIFLFSKSKKYFFDYKAISEPIAPATAERLKRGMKGGNKYGKPVPGQPQPQSINRPR 180
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ +++ + ++ + H P L+ L++ G ++LDPF G
Sbjct: 181 EHGEIKDADINPLRNKRDVWKINTVPFKGGHYAAYPPKLVETCLLAGCPEGGVVLDPFMG 240
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
SGT+G VA ++ R F+GIE+ Y ++A KRI
Sbjct: 241 SGTTGMVAAQMGRHFVGIELNPAYTELAYKRI 272
>gi|317009391|gb|ADU79971.1| adenine specific DNA methyltransferase [Helicobacter pylori India7]
Length = 622
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/212 (14%), Positives = 71/212 (33%), Gaps = 31/212 (14%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY----RPDHSLV-------- 65
+ II G+++ L+ L + + + +I+ DPPYN + +Y R D+ +
Sbjct: 102 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGKDDFIYTDNFRQDYQKILREVGLME 161
Query: 66 -----DAVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + KF + + +F L R +LK +G +++ +
Sbjct: 162 IDENGEEIESESLKFFKNTQGSKTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECAN 221
Query: 114 IGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ + RK+ N HE L+ + + + + K
Sbjct: 222 LKILCDEIFGEGNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNKE---FVNLLGGEK 278
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+D +G ++ + + +
Sbjct: 279 NLENYKNPDNDPNGAWINGDPSAKSGNMKTGY 310
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + SD + ++ L + + + K +++I+ +T+ GDIILD F GSGT
Sbjct: 376 DSLIFSDNCYMNQAATKELLSLELAEYFSYPKGVDFMAKIVEHATEKGDIILDFFAGSGT 435
Query: 237 SGAVAK------KLRRSFIGIEMKQD 256
+ K R FI +++ ++
Sbjct: 436 TAHAVMELNAEDKGNREFILVQIDEE 461
>gi|253687248|ref|YP_003016438.1| Site-specific DNA-methyltransferase (adenine-specific)
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251753826|gb|ACT11902.1| Site-specific DNA-methyltransferase (adenine-specific)
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 586
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 84/235 (35%), Gaps = 16/235 (6%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL----- 64
+ + + I++G+++ L+ L A V I+ DPPYN G +Y + +
Sbjct: 31 SHGQDDSGNIIVQGDNLHALKALLPRYAGQVKCIYIDPPYNTGNEGWIYNDNVNSPEIRK 90
Query: 65 --VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ V + + + L+ ++ L+ +G ++V + I + ++++ +
Sbjct: 91 WLGEVVGKEGETLDRHDRWLCMMYPRLVLLKQFLRNDGVIFVSIDDNEIGNLQSLMREI- 149
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK--AKGYTFNYDALKAANEDVQM 180
F N+I + HE ++ S + K T +E ++
Sbjct: 150 FGASNEIATIVWGKGKKGDAKLVSVTHEYIVAFSKNKDFLKKQKTRWRRKKPGVDEVLEH 209
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQK--PEALLSRILVSSTKPGDIILDPFFG 233
++ + ++RN K P + S + G D F G
Sbjct: 210 YNNLRKKYLNDHVKIRNDMMSWYRSLSKDDPRK-AHKHYNWSDERGLYFPDNFHG 263
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/268 (17%), Positives = 90/268 (33%), Gaps = 31/268 (11%)
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW---LLACRRVLKPNGTLWVIG 106
L+ +R VD V + ++ + Y +++ R L +
Sbjct: 188 FLKKQKTRWRRKKPGVDEVLEHYNNLR--KKYLNDHVKIRNDMMSWYRSLSKDDPRKAHK 245
Query: 107 SYHNIFRIGTMLQNLNFWILN-----------DIVWRKSNPMPNFRGRRFQNAHETLIWA 155
Y+ G + + V ++ +P+ R +N + +
Sbjct: 246 HYNWSDERGLYFPDNFHGPDDGRENRPRYPIIHPVTKQPCAIPSTGWRWEENKTKAALAD 305
Query: 156 S----PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
S K N + + ++ M S + + + G P K A
Sbjct: 306 SPPRIHFGKDHTTIPNRKSYLSEIDEEPMLSVFYKDGRGATLEVEKILGPGAFPFPKDSA 365
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVA------KKLRRSFIGIEMKQD-YIDIATKR 264
+++ ++ ++PGD++LD F GSGT+ KK +FI IEM + I+ +R
Sbjct: 366 VVADLIGMVSQPGDLVLDSFAGSGTTAHAVFQLNQGKKNPINFILIEMDNNVAINKTRER 425
Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNL 292
I LTGK+ P
Sbjct: 426 IRKAI----DGYIPLTGKKRSPVAGLGS 449
>gi|193071376|ref|ZP_03052292.1| DNA methylase [Escherichia coli E110019]
gi|192955292|gb|EDV85779.1| DNA methylase [Escherichia coli E110019]
gi|315617974|gb|EFU98567.1| DNA methylase family protein [Escherichia coli 3431]
Length = 354
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L R+LKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRLLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCS 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R IG+E++ + +
Sbjct: 283 HPCEKPADMLRQIIEASSRPGDLVADFFMGSGSTIKAALSLGRRAIGVELEAERFEQTVS 342
Query: 264 RIASVQPLGNIE 275
I + ++
Sbjct: 343 EIREILTCKAVD 354
>gi|118588966|ref|ZP_01546373.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
gi|118438295|gb|EAV44929.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
Length = 252
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/272 (18%), Positives = 86/272 (31%), Gaps = 36/272 (13%)
Query: 23 IIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLV--DAVTDSWDKFS 76
+ G++ V+ KL P D PY L G V +D
Sbjct: 11 LHLGDARDVVPKLGRRFPVACFDA-----PYRLTSGGAARSSGKHKVMSGGWMADYDNSG 65
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
F D + + L + ++ + N F N + W K
Sbjct: 66 QFMVCDITWKEIMQLVVSCLAEDADVYAFANDKNQFEAQREAFAAGLKFHNMLAWDKKTA 125
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
N + + + Y + A K AN + + +
Sbjct: 126 TANR-------------FYMKNLEFILYLYRGRARKIANCGDKQLVPFPHRDVTD----- 167
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
HPT+KP L+ + +S +PG+ ++DPF GSGT+ + F+G+E+
Sbjct: 168 -------HPTEKPVPLVEAYIRNSARPGEAVIDPFMGSGTAAVACVRTGNPFVGVEIDPK 220
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
Y + A +R+ +L R
Sbjct: 221 YFETARRRVERAIDGHQCDLETFLENRGAQAC 252
>gi|291439977|ref|ZP_06579367.1| DNA methylase N-4/N-6 [Streptomyces ghanaensis ATCC 14672]
gi|291342872|gb|EFE69828.1| DNA methylase N-4/N-6 [Streptomyces ghanaensis ATCC 14672]
Length = 944
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 23/123 (18%)
Query: 17 FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLN-GQLYRPDHSLV----- 65
W +++I G+S+ + L V +++ DPPY ++ R D+S V
Sbjct: 176 MSWTNRMILGDSLQAMASLAERENLRGKVQMVYIDPPYGIKFGSNWQTRADNSRVRDGRM 235
Query: 66 ----------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
A D+W+ S +Y + R L + R +L +G++++ N+ +
Sbjct: 236 EDATREVEQIKAFRDTWELGIS--SYLTYLRDRLESARDLLSESGSVFIQIGDENVHLVR 293
Query: 116 TML 118
++L
Sbjct: 294 SLL 296
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 48/104 (46%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+K++ Q ++ R ++ +T PGD++LDP GSGT+ VA++ R +I
Sbjct: 462 WDDTTTAGFGADKIYVVQTNTKVIERCMLMATDPGDLVLDPTCGSGTTAYVAEQWGRRWI 521
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
I+ + I +A R+ + + GK E ++ L
Sbjct: 522 TIDTSRVAIALARHRLMGAKYPAYLLADSPEGKAKEAEISQQPL 565
>gi|119513181|ref|ZP_01632229.1| DNA methyltransferase [Nodularia spumigena CCY9414]
gi|119462168|gb|EAW43157.1| DNA methyltransferase [Nodularia spumigena CCY9414]
Length = 558
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 17/223 (7%)
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
++F+ +T ++ + +G + G L N
Sbjct: 177 NQFTWNPLKLPYTDEYIKQYYCNIDSDGRRFQFGD----------LTNTKTSRGYFYKLL 226
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
+P N A + L + G T Y + W S
Sbjct: 227 DCDPPDNGWRMPESRAQQWLSEGRIAIPPTGKTPRYKRYLDEVAGKGISDIWDDIPPVNS 286
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ +PTQKP++LL RI+ S+ DI+LDPF G GT+ A+KL R++IGI+
Sbjct: 287 Q----AKEALGYPTQKPQSLLERIIQVSSNKDDIVLDPFCGCGTAIHAAEKLGRNWIGID 342
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
+ I + KR+ P + K + VE
Sbjct: 343 ITHLAIALIEKRLRDAFP---SKFIEDENKTQKLVPGIEFEVE 382
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 69/200 (34%), Gaps = 40/200 (20%)
Query: 22 KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDSW-- 72
++ G++++VL +P + +DLI+ DPP+N + N + + + + A D+W
Sbjct: 3 RLYYGDNLNVLRDHIPDEYIDLIYLDPPFNSKSNYNILFKNTTGERSEAQITAFEDTWTW 62
Query: 73 --------DKFS--------------------SFEAYDAFTRAWLLACRRVLKPNGTLWV 104
D+ S AY L+ RVLK G+L++
Sbjct: 63 SIESERFLDQIKHKKGELYQLLDLLVRTLGKNSLSAYLVMMAIRLIELHRVLKSTGSLYL 122
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ +L + + +++ + + + + +
Sbjct: 123 HCDTTASHYLKMILDLIFDARNYRNQITWKRTSSHSDAKKYARVTDIIFYYVK---SNQF 179
Query: 165 TFNYDALKAANEDVQMRSDW 184
T+N L +E ++
Sbjct: 180 TWNPLKLPYTDEYIKQYYCN 199
>gi|118498062|ref|YP_899112.1| adenine specific DNA methylase [Francisella tularensis subsp.
novicida U112]
gi|194323287|ref|ZP_03057071.1| DNA methylase domain protein [Francisella tularensis subsp.
novicida FTE]
gi|118423968|gb|ABK90358.1| adenine specific DNA methylase [Francisella novicida U112]
gi|194322651|gb|EDX20131.1| DNA methylase domain protein [Francisella tularensis subsp.
novicida FTE]
Length = 660
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/335 (14%), Positives = 98/335 (29%), Gaps = 30/335 (8%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRP 60
K A E ++ +I+G++I L+ L A + +I+ DPPYN + +Y
Sbjct: 87 KELKAELEQSKDFDNTENVVIRGDNIDTLKILRANYTNKIKMIYIDPPYNTKSENFVYND 146
Query: 61 DHSLVD-------AVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ + + + F S + +F L R +LK +G +++
Sbjct: 147 NFKKNEEELIKEFGLAEETQNFLTNVYGTRSHSGWLSFMYPRLKIARELLKEDGVIFISI 206
Query: 107 SYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ + + + N N F HE +
Sbjct: 207 DDNEQANLKIICDEIFGEENFVACLPTIMNLKGNHDNYGFAETHEYIFVYVIDKNICEIN 266
Query: 166 FNY------DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
+ + + + +D L + R+ G K E +
Sbjct: 267 KFDVDESELEKWQEDDYGLWKEADTLKRTGQDASRINRPKGYFPVFIDKNEKIYVTENDL 326
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT--KRIASVQPLGNIELT 277
D I+ P +G + + I E + + I Q G +L
Sbjct: 327 PENRNDTIIYPVNDNGDEL--SWSWGKRKIMQENYNLILKKTSNGFSIYKKQRPGIGDLP 384
Query: 278 VLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQG 310
K + ++ ++ G+ + +
Sbjct: 385 TKKAKSFLYKTEYSSTTATNYLKKEFGKKIFDNPK 419
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 34/160 (21%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSF 248
L+ + G+K+ KP LL +++ D+ILD F GSGT+G +L R +
Sbjct: 406 LKKEFGKKIFDNPKPLPLLKDLIILGLNSNDVILDFFAGSGTTGDAVMQLNAEDGGKRKY 465
Query: 249 IGIEMK------QDYID-------------IATKRIAS----VQPLGNIELTVLTGKRTE 285
I ++ ++ I +R+ ++ E K+
Sbjct: 466 ILAQLDEPIDEKKEAYKFCTDKNFEPVISSITIERLNRAGEKIKADIQAEFDAENSKKKP 525
Query: 286 PRVAFNLLVER----GLIQPGQILTN-AQGNISATVCADG 320
+ L E+ + G + + A V DG
Sbjct: 526 NQEKLAELQEKLENISKLDIGYKVFSLKDKPCIAEVTNDG 565
>gi|296111466|ref|YP_003621848.1| DNA methylase [Leuconostoc kimchii IMSNU 11154]
gi|295832998|gb|ADG40879.1| DNA methylase [Leuconostoc kimchii IMSNU 11154]
Length = 608
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 25/175 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYR 59
+ NS N N + + G+++ VL L A SVD I+ DPPYN +G +Y
Sbjct: 71 EHNSKPENANSH------NLFFTGDNLEVLRHLQANYQNSVDFIYIDPPYNTGSDGFVYP 124
Query: 60 PD--------HSLVDAVTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVI 105
++ D + S A+ F L +++LK G ++V
Sbjct: 125 DKFEYGDDQLKNMFGLNDDELRRLKSIQGKATHSAWLTFMYPRLYLAKKLLKDTGVIFVS 184
Query: 106 GSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+ + ++ K PN G H+ L+ + +
Sbjct: 185 IDDNEQANLKLLMDEVFGEGSFVADSVVKRKNAPNNMGNIPS-VHDYLLIFAKNQ 238
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
GEK+ T KP +L+ I+ ILD F GS T+ + R ++ +++
Sbjct: 364 GEKIFDTPKPTSLIKYIVTIFNNKNAHILDFFAGSATTADAVMQLNQEDGGNRKYMMVQL 423
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
+Y+ + S + + + + ++ P L +
Sbjct: 424 -PEYLSETSAAYKSGYKTIDEISRERIKRSAKKIGDTSGFKHYNIVSPTVELLDK 477
>gi|99908362|gb|ABF68766.1| Mod [Arcanobacterium pyogenes]
Length = 510
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 51/150 (34%), Gaps = 12/150 (8%)
Query: 24 IKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD------- 73
I+G+++ VL+ L + +++ DPPYN + ++ +
Sbjct: 1 IEGDNLEVLKLLQRGYHGKIKMVYIDPPYNTGHDFVYKDRFGDTLENYIEQAGLMGQSNA 60
Query: 74 --KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
S + + L R +L +G ++V + + + ++ + +
Sbjct: 61 DTSGSYHANWCSMMYPRLRLARELLADDGAIFVSIDDNEVTNLTKLMDEIFGERNRIALI 120
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ H T+ + + + ++
Sbjct: 121 CHKARASVSNDKIISPNHNTIAFYAKNIES 150
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 44/147 (29%), Gaps = 17/147 (11%)
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
G L +W + +K R + A+ + T
Sbjct: 187 GGAKKGNPFFEFLGVEGYWRFSKETMQKKYEEGLVVKRGNSLYQKYYQSAAKQTRRTVTT 246
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+ DA + + RL+ G T KP LL R+L T D
Sbjct: 247 WWDDAGLT---------------STATSRLKELMGGATFDTPKPIELLERMLKMITFSSD 291
Query: 226 --IILDPFFGSGTSGAVAKKLRRSFIG 250
I++D F GS T + R + G
Sbjct: 292 DCIVMDFFSGSATLAHAVMNINREYGG 318
>gi|53805208|ref|YP_113069.1| DNA methyltransferase [Methylococcus capsulatus str. Bath]
gi|53758969|gb|AAU93260.1| DNA methyltransferase [Methylococcus capsulatus str. Bath]
Length = 1192
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 24/181 (13%)
Query: 18 EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
+W +++I G+S+ V+ L A V +I+ DPPY ++ +
Sbjct: 55 DWANRLIAGDSLLVMNSLIQKESMAGQVQMIYIDPPYGIKYGSNFQPFVNKRDVKDRRDE 114
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ A D+W+ +Y + R LL R +L +G+++V S N+ +
Sbjct: 115 DLTQEPEMIKAFRDTWELG--IHSYLTYLRDRLLLARELLSESGSVFVQISDENLHHVRE 172
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
++ + F N I + + L+W S + Y Y A E
Sbjct: 173 VMDEI-FGSENFIAQITFSKTSGATNLFLPGTADYLLWYGKSKEQTKYRSLYKDKTAGAE 231
Query: 177 D 177
Sbjct: 232 G 232
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
L +K + + ++ R L+ +T PGD++LDP GSGT+ VA+K R +I +
Sbjct: 353 LAGFASDKRYVVETSAKVIERCLLMTTDPGDLVLDPTCGSGTTAFVAEKWGRRWITCDTS 412
Query: 255 QDYIDIATKRIASVQ------PLGNIELTVLTGKRTEPRVAFNLL 293
+ + +A +R+ + + L +T P V +
Sbjct: 413 RVAVTLAKQRLLTASYDYYELKYPHEGLKGGFIYKTVPHVTLKSI 457
>gi|18249888|ref|NP_543076.1| putative DNA methylase [Enterobacteria phage phiP27]
gi|18152355|emb|CAC83542.1| putative DNA methylase [Enterobacteria phage phiP27]
Length = 352
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R IG+E++ +
Sbjct: 283 HPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQT 340
>gi|255020805|ref|ZP_05292861.1| DNA methylase, putative [Acidithiobacillus caldus ATCC 51756]
gi|254969596|gb|EET27102.1| DNA methylase, putative [Acidithiobacillus caldus ATCC 51756]
Length = 970
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 27/201 (13%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL----------YRPDHS 63
W++++I G+S+ + L V +I+ DPPY ++ + D
Sbjct: 255 WQNRMILGDSLVAMNSLLEFEGMAGQVQMIYIDPPYGVKFGSNFQPFVRKRDVKHGGDDD 314
Query: 64 ------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+V A D+W+ +Y + R L+ + +L G+L++ S N+ +
Sbjct: 315 ITREPEMVKAYRDTWELG--LHSYLTYLRDRLMVAKELLHETGSLFLQISDENLHHCREL 372
Query: 118 LQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD---ALKA 173
L ++ R + LIW + +P Y ++ A
Sbjct: 373 LDEVFGEDHFVSLISFAKAGGGLESTSRVSARLDYLIWYAKNPDHLKYRRLFEVRSDPIA 432
Query: 174 ANEDVQMRSDWLIPICSGSER 194
D+ SD + +ER
Sbjct: 433 DGFDMVETSDGTRRRVTRAER 453
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
L+ Q ++ R ++ T PGD++LDP GSGT+ VA++ R +I I+ + + +A
Sbjct: 547 LYVVQTNPTVVQRCMLMCTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVPLALAR 606
Query: 263 KRI 265
+R+
Sbjct: 607 QRL 609
>gi|221201789|ref|ZP_03574826.1| type III DNA modification methyltransferase [Burkholderia
multivorans CGD2M]
gi|221178209|gb|EEE10619.1| type III DNA modification methyltransferase [Burkholderia
multivorans CGD2M]
Length = 840
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 17/163 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 266 WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGNDFVYADDFSDSIRHYLAMT 325
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 326 GQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLML 385
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + V P R HE+L+ + + +A
Sbjct: 386 REIFGEENELGVAVWDKRNPKGDARGIAYQHESLVLFARNAEA 428
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 439 KRNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVSM 498
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 499 AWPN----KKKAPDEYFTPLLHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 554
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + GS+ K KP + ++ T+ DI
Sbjct: 555 QPQRIYYLDEN-MYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRGDDI 613
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 614 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 646
>gi|221207705|ref|ZP_03580713.1| type III DNA modification methyltransferase [Burkholderia
multivorans CGD2]
gi|221172551|gb|EEE04990.1| type III DNA modification methyltransferase [Burkholderia
multivorans CGD2]
Length = 668
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 17/163 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 94 WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGNDFVYADDFSDSIRHYLAMT 153
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 154 GQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLML 213
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + V P R HE+L+ + + +A
Sbjct: 214 REIFGEENELGVAVWDKRNPKGDARGIAYQHESLVLFARNAEA 256
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 267 KRNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVSM 326
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 327 AWPN----KKKAPDEYFTPLLHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 382
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + GS+ K KP + ++ T+ DI
Sbjct: 383 QPQRIYYLDEN-MYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRGDDI 441
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 442 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 474
>gi|157311255|ref|YP_001469299.1| gp66 [Mycobacterium phage Tweety]
gi|148540884|gb|ABQ86135.1| gp66 [Mycobacterium phage Tweety]
Length = 218
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 83/250 (33%), Gaps = 51/250 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + + E L A D++ DPPY + + D
Sbjct: 11 TLYHGDCLEITEWLAA---DVLVTDPPYGMSYQSGRRAEKFQAIAGDKD----------- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ CR + TL V G+ GT + ++W K P
Sbjct: 57 --------VQCR-----DRTLAVWGTERPAAVFGTWRVAKPANVQQCLIWDKRGAGPGMG 103
Query: 142 --GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
F +HE + K S + +
Sbjct: 104 DLTTAFGTSHEEIYLIGHWAKR--------------------STRRGSVITTESSPSALT 143
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPT KP L+ I+ ++ P ++ DPF GSG++ A+ L R I +E+++ Y +
Sbjct: 144 SRIGHPTPKPIGLMETIIAAA--PEGVVADPFAGSGSTLVAARNLGRKAIDVELEEKYCE 201
Query: 260 IATKRIASVQ 269
I KR+ +
Sbjct: 202 IIAKRLDQMC 211
>gi|323956991|gb|EGB52718.1| DNA methylase [Escherichia coli H263]
Length = 250
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
>gi|221214549|ref|ZP_03587519.1| type III DNA modification methyltransferase [Burkholderia
multivorans CGD1]
gi|221165439|gb|EED97915.1| type III DNA modification methyltransferase [Burkholderia
multivorans CGD1]
Length = 672
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 98 WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGNDFVYADDFSDSIRHYLAMT 157
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 158 GQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLML 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 218 REIFGEENELGVAVWDKRNPKGDARGIAYQHESLVLFARN 257
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 271 KRNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVSM 330
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 331 AWPN----KKKAPDEYFTPLLHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 386
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + GS+ K KP + ++ T+ DI
Sbjct: 387 QPQRIYYLDEN-MYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRGDDI 445
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 446 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 478
>gi|189348934|ref|YP_001944562.1| adenine-specific DNA methyltransferase [Burkholderia multivorans
ATCC 17616]
gi|189332956|dbj|BAG42026.1| adenine-specific DNA methyltransferase [Burkholderia multivorans
ATCC 17616]
Length = 668
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 94 WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGNDFVYADDFSDSIRHYLAMT 153
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 154 GQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLML 213
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 214 REIFGEENELGVAVWDKRNPKGDARGIAYQHESLVLFARN 253
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 267 KRNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVSM 326
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 327 AWPN----KKKAPDEYFTPLLHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 382
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + GS+ K KP + ++ T+ DI
Sbjct: 383 QPQRIYYLDEN-MYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRRDDI 441
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 442 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 474
>gi|161523209|ref|YP_001578221.1| adenine-specific DNA-methyltransferase [Burkholderia multivorans
ATCC 17616]
gi|160340638|gb|ABX13724.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia multivorans ATCC 17616]
Length = 688
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 114 WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGNDFVYADDFSDSIRHYLAMT 173
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 174 GQTEGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSEEGLIVVHIDEHEVHALVLML 233
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 234 REIFGEENELGVAVWDKRNPKGDARGIAYQHESLVLFARN 273
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAW+ A L +G ++ V
Sbjct: 287 KRNAQRMLDAAHDAMYRSGTPKDAAKAYRAWVKAQTNLSGGEAMYDRLSEDGRVYRLVSM 346
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 347 AWPN----KKKAPDEYFTPLLHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 402
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + GS+ K KP + ++ T+ DI
Sbjct: 403 QPQRIYYLDEN-MYENVPSVLPFGGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRRDDI 461
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 462 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 494
>gi|194440206|ref|ZP_03072244.1| DNA methylase [Escherichia coli 101-1]
gi|194420860|gb|EDX36909.1| DNA methylase [Escherichia coli 101-1]
Length = 349
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---EGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
H L N + ++ + + RG + H+ + S + YT
Sbjct: 192 HWFGASQWQLPNEGDYNKLQALFARVAAEKHQRGELEKPHHQLVSTYSELN--RQYTELL 249
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
K + + + ++ G+ HP +KP +L +I+ +S++PGD++
Sbjct: 250 SEYKNLRRYFGVTAQVPYTDVWTHKPVQYYPGK--HPCEKPAEMLQQIINASSRPGDLVA 307
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
D F GSG++ A L R IG+E++ +
Sbjct: 308 DFFMGSGSTVKAAMALGRCAIGVELETGRFEQT 340
>gi|313631431|gb|EFR98768.1| DNA methylase [Listeria seeligeri FSL N1-067]
Length = 203
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 87/206 (42%), Gaps = 6/206 (2%)
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ E +D F + ++V+ + ++V ++ N + + +W K+
Sbjct: 1 MTDEQFDMFLAKVFQSYQKVMAGHAAIYVFHPSSYQIEFENSMKLANIQVRSQCIWIKNY 60
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P + +++ HE + +A ++ + + + + + E
Sbjct: 61 PSFGWS--QYRWQHEPVFYAHLKGESPFWYGDRKQTTTWRDHSYLGEEASTIW----EIA 114
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R+ + +HPTQKP LL+ + +S+K GD I D F GSG++ A++L R +E+
Sbjct: 115 RDSNNTYIHPTQKPLDLLAIPMRNSSKKGDTIADFFGGSGSTLLTAEQLGRICYTMELDP 174
Query: 256 DYIDIATKRIASVQPLGNIELTVLTG 281
+ D +R + + + + LT
Sbjct: 175 KFCDAIKQRFEAYTGIKPVLMQQLTT 200
>gi|260174933|ref|ZP_05761345.1| putative methylase [Bacteroides sp. D2]
gi|315923173|ref|ZP_07919413.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313697048|gb|EFS33883.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 251
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 28/235 (11%)
Query: 39 SVDLIFADPPYNLQLN----GQLYRPDHSLVDAVTD-------SWDKFSSFEAYDAFTRA 87
LI AD PYNL N + D + +D DK + F
Sbjct: 21 KAQLIIADVPYNLGNNAYASNPSWYVDGDNKNGESDKAGKEFFDTDKDFRPAEFMHFCSQ 80
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + + + + FR + + ++V+RK +
Sbjct: 81 MLVKEPKDKAKAPCMIIFCEFEDQFRYIELGKRYGLNNYINLVFRKDFSAQVLKANM--- 137
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ + + K N+ + + + +R+ D K+HPTQ
Sbjct: 138 ------KVVGNCEYGLLFYREKLPKFNNDGRMIFNCFDW--------VRDNDTPKIHPTQ 183
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
KP LL R++ T GD+++DP GSG++ A +L R G E+K+ + A
Sbjct: 184 KPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRRAYGFEIKKKFFADAN 238
>gi|167585031|ref|ZP_02377419.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia ubonensis Bu]
Length = 672
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 17/163 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--------------QLY 58
+ + +I+G+++ V++ L V L++ DPPYN + +
Sbjct: 98 WDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSLRHYLAVT 157
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 158 GQTDGGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDAGLIAVHIDEHEVHALVLML 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + V P R HE+L+ + + +A
Sbjct: 218 REIFGEENELGVAVWDKRNPKGDARGVAYQHESLVLFARNAEA 260
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D + + RAW+ A L +G ++ V
Sbjct: 271 KRNAQRMLDAAHDLVRRSGTHADAAQAYRAWVKAQTNLSGGEVMYDRLSEDGRVYRLVSM 330
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 331 AWPN----KKKAPDEYFVPLVHPVTGKPCAMPERGWRNPPATMQALLERGLIEFGADETT 386
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + GS+ K KP + ++ T+ DI
Sbjct: 387 QPQRIYYLDEN-MYENVPSVLPFGGSDDALLKALGVPFEQPKPVDFAAAVIGWCTRGDDI 445
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
++D F GSG++G +L R ++ +++
Sbjct: 446 VVDCFAGSGSTGHAVMQLNATDGGARRYVLVQL 478
>gi|162455643|ref|YP_001618010.1| adenine DNA methyltransferase [Sorangium cellulosum 'So ce 56']
gi|161166225|emb|CAN97530.1| adenine DNA methyltransferase [Sorangium cellulosum 'So ce 56']
Length = 338
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ W P G ER + +D +H QKP LL RI+ +S+ PGD++ +PF G + A
Sbjct: 242 NVWQEPAVRGPERFK-EDTRSIHGNQKPLKLLDRIIRASSDPGDVVWEPFGGLCSVAVAA 300
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
R E+ Y +A++R+A P +E++
Sbjct: 301 FNAGRRCYSAEIAPTYHAVASRRLAKCAPQPRVEIS 336
>gi|317010107|gb|ADU80687.1| adenine-specific DNA-methyltransferase [Helicobacter pylori India7]
Length = 486
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 28/226 (12%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + +K +IKG+++ L+ L ++ + +I+ DPPYN + +Y D
Sbjct: 74 KKNNKILKPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYDDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-----KAK 162
+ ++ + + + FQN +E ++ +
Sbjct: 194 DNEAAQLKLLCDEIFGEGNFLSSLTWLKGNAQNDAQYFQNNYENILAYAKHVEALNLNRM 253
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
Y ++ + G+ R+ G ++ K
Sbjct: 254 AYKQEVKVFYENDKYYYEGAGLTTGGAGGTLNARSNLGYSIYYNPK 299
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
N N + + +E +I N + A D + +
Sbjct: 349 RWTWALDTFNSNKNIISIKKNSRNEYVICKKEFLDKNQVKQNENGEFYAILDKSSPARNV 408
Query: 186 IPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
I G + + +K+ KP L++R++ ST GDIILD F GSGT+
Sbjct: 409 IENIGGGNGTKEVNALFNQKIFNNPKPTKLINRLIELSTNEGDIILDFFAGSGTTAHAVL 468
Query: 243 KLR 245
+
Sbjct: 469 ESN 471
>gi|255523619|ref|ZP_05390586.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
P7]
gi|255512674|gb|EET88947.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
P7]
Length = 307
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 93/257 (36%), Gaps = 27/257 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I+G+ L + S+D I D P L SF YD
Sbjct: 67 VIEGDGRD-LSIIEDNSIDCILTDHP-WLDTKSNK---------------GGSRSFSDYD 109
Query: 83 AFTRAW--LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP-- 138
F RVLKP L I N + + + +++
Sbjct: 110 CFRYNIDDFKEKARVLKPGCFLVEIIPSENENNFEYLYEIKKYAKECGLIYYSKVTWKKG 169
Query: 139 ---NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ GR+ +N+ + +I++ KA+ + E+ M +
Sbjct: 170 NFVSNTGRKAKNSQDVMIFSK--GKARAMRMDQKKTLKTGENCYMSGCNGMLPTMFDVPP 227
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+K+ +++H ++ P +L +IL T G+++LD F GSG G A +R+ I IE+ +
Sbjct: 228 VSKN-KRIHQSELPTSLCEQILEFVTYEGEVVLDSFAGSGAVGEAALNKKRNCILIELLR 286
Query: 256 DYIDIATKRIASVQPLG 272
+ + R+
Sbjct: 287 ENVVKIKSRLRDKIYFD 303
>gi|194430409|ref|ZP_03062894.1| DNA methylase [Escherichia coli B171]
gi|194411547|gb|EDX27884.1| DNA methylase [Escherichia coli B171]
Length = 349
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---EGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R IG+E++ +
Sbjct: 283 HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQT 340
>gi|297565036|ref|YP_003684008.1| DNA methylase N-4/N-6 domain-containing protein [Meiothermus
silvanus DSM 9946]
gi|296849485|gb|ADH62500.1| DNA methylase N-4/N-6 domain protein [Meiothermus silvanus DSM
9946]
Length = 361
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 31/212 (14%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + + + G++ L L S+DLI PPY +++ P
Sbjct: 13 NPLRQSETTFLLGDARD-LSALEENSIDLIITSPPYWKKIDY--LHPKQ---------IG 60
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNFWI 125
+ ++ + Y A L RVLKP+G+ +V + + R Q+ + I
Sbjct: 61 QEATPKGYIRSLMACLKQWERVLKPHGSAFVNIADTYVNRDLAGIPERFMLAAQDHGWLI 120
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+ IVW K +P + R N +E + S K + YT Y + W
Sbjct: 121 QHRIVWVKPYGIPESKPYRLANRYEFIYHLSR--KREIYTNLYGYAAKFGNGFNPGNVW- 177
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
+LR + + H P+ L+ R+L
Sbjct: 178 --------KLRAERSKDPHLAPFPDELVERVL 201
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEM 253
ILDPF GSGT+ VA+KL IG+++
Sbjct: 319 TILDPFAGSGTTLKVARKLGFRAIGLDL 346
>gi|239625054|ref|ZP_04668085.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521440|gb|EEQ61306.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
Length = 324
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 60/274 (21%), Positives = 100/274 (36%), Gaps = 26/274 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K + + + +I+GN L L S+D I D PY L L +
Sbjct: 66 KGVYTVTKKNAENEDITCMLIQGNGRD-LSFLEDNSIDAIITDHPY--LLKKSLKGGNR- 121
Query: 64 LVDAVTDSWDKFSSFEAYDAF--TRAWLLACRRVLKPNGTLWVI-----GSYHNIFRIGT 116
F +YD F T+ L RVLK L G +
Sbjct: 122 -------------DFASYDLFQYTQQDLDEKFRVLKKGHFLVEFLPEENGDNYEYLYQVK 168
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ + + V + + GR+ +N E ++ S A+ + KA E
Sbjct: 169 AMAKESGFEYYAKVAWRKGTIVANTGRKAKN-TEDILLFSKGR-ARDMRPDAKKDKAEPE 226
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
S + + + +++H ++KP LL +IL T +++LD + GS
Sbjct: 227 MKHYMSGAKGMLPTAFDIQPISKADRVHQSEKPVELLKQILEFVTDKKELVLDQYAGSFA 286
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
A + R I IE+ Q+Y + KRI +V+
Sbjct: 287 LAEAALESERDSISIEISQEYFEEGKKRIENVKK 320
>gi|238854122|ref|ZP_04644469.1| DNA methylase [Lactobacillus gasseri 202-4]
gi|238833198|gb|EEQ25488.1| DNA methylase [Lactobacillus gasseri 202-4]
Length = 636
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 17/167 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-----R 59
+NQ + K+ G+++ VL L +D+I+ DPPYN +G +Y
Sbjct: 82 DEKQNQGEGKDSKNLFFTGDNLEVLRHLQNNYQNKIDVIYIDPPYNTGSDGFVYPDSFEY 141
Query: 60 PDHSLVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D L D D+ S A+ F L+ +R L +G +++ +
Sbjct: 142 SDEKLKDMFGLDDDQVERLKSIQGKSSHSAWLTFMYPRLILAKRFLANSGVIFISIDDNE 201
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + + E ++ S
Sbjct: 202 STNLKEICDEIFGENNFVANIAWRRQDGQSNIGSLAKVKEYILVYSK 248
Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDW---LIPICSGSERLRNKDGEKLHPTQK 208
+ W + + + N+ W GS ++ G++ K
Sbjct: 321 IHWPEKNGGSPRRKIYLKDM--LNKGQIPNDFWGIEYGTNQRGSNEVQELFGKRYFNFPK 378
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
P +L+ ++ ++D F GS T+ +L R FI +++
Sbjct: 379 PTSLIKMLVRIGGNKYATVMDFFAGSSTTADAVMQLNAEDDGHRRFIMVQL 429
>gi|295987478|ref|YP_003620423.1| hypothetical protein LKI_10371 [Leuconostoc kimchii IMSNU 11154]
gi|295831568|gb|ADG39454.1| hypothetical protein LKI_10371 [Leuconostoc kimchii IMSNU 11154]
Length = 619
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 18/126 (14%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------GQLYRPD 61
E + + ++ I G+++ L+ L +D+I+ DPPYN + + + +
Sbjct: 67 EESVNFEKSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTQKE 126
Query: 62 HSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ L + + D + L R +L G ++V +
Sbjct: 127 NDLSEGIIDEEGNRLVKNEKSNGRYHSDWLTMMYPRLKLARNLLSDTGVIFVSIDDNEQA 186
Query: 113 RIGTML 118
+ ++
Sbjct: 187 NLKLLM 192
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 23/149 (15%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEM 253
G KP +L+ ++ S++ ILD F GSGT+ + R++I I +
Sbjct: 390 GINEFDFPKPVSLIKFLIQISSQYNSTILDFFAGSGTTAESVMAINQQDQGSRNYILITL 449
Query: 254 K-----QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN----LLVERGLIQPGQI 304
++ + +++ +G R + + G + +
Sbjct: 450 DELLDQENKYTTIDQISRERIRRAAKKISDTSGFRALKVDSTGLKEDVFKTAGELDQVDL 509
Query: 305 LTNAQG--------NISATVCADGTLISG 325
L + ++ V DG L
Sbjct: 510 LQDIDNHSDNRSDYDLLYDVLVDGALEYN 538
>gi|309701411|emb|CBJ00715.1| phage DNA adenine-methylase [Escherichia coli ETEC H10407]
Length = 349
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---EGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
H L N + ++ + + RG + H+ + S + YT
Sbjct: 192 HWFGTSQWQLPNEGDYNKLQALFARVAAEKHQRGELEKPHHQLVSTYSELN--RQYTELL 249
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
K + + + ++ G+ HP +KP +L +I+ +S++PGD++
Sbjct: 250 SEYKNLRRYFGVTAQVPYTDVWTHKPVQYYPGK--HPCEKPAEMLQQIINASSRPGDLVA 307
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
D F GSG++ A L R IG+E++ +
Sbjct: 308 DFFMGSGSTVKAAMALGRCAIGVELETGRFEQT 340
>gi|194430626|ref|ZP_03063079.1| DNA methylase [Escherichia coli B171]
gi|215486360|ref|YP_002328791.1| predicted DNA methylase [Escherichia coli O127:H6 str. E2348/69]
gi|312968768|ref|ZP_07782975.1| DNA methylase family protein [Escherichia coli 2362-75]
gi|194411330|gb|EDX27699.1| DNA methylase [Escherichia coli B171]
gi|215264432|emb|CAS08792.1| predicted DNA methylase [Escherichia coli O127:H6 str. E2348/69]
gi|312286170|gb|EFR14083.1| DNA methylase family protein [Escherichia coli 2362-75]
Length = 349
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---EGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
H L N + ++ + + RG + H+ + S + YT
Sbjct: 192 HWFGTSQWQLPNEGNYNKLQALFARVAAEKHQRGELEKPHHQLVSTYSELN--RQYTELL 249
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
K + + + ++ G+ HP +KP +L +I+ +S++PGD++
Sbjct: 250 SEYKNLRRYFGVTAQVPYTDVWTHKPVQYYPGK--HPCEKPAEMLQQIINASSRPGDLVA 307
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
D F GSG++ A L R IG+E++ +
Sbjct: 308 DFFMGSGSTVKAAMALGRCAIGVELETGRFEQT 340
>gi|300825231|ref|ZP_07105318.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
gi|331667978|ref|ZP_08368834.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
gi|300522283|gb|EFK43352.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
gi|331064788|gb|EGI36691.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
Length = 361
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG + A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPADMLRQIISASSRPGDVVADFFMGSGATIKAAMGLG 324
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R IG+E++ + I
Sbjct: 325 RRTIGVELESGRFEQTVGEI 344
>gi|261840056|gb|ACX99821.1| adenine specific DNA methyltransferase (dpnA) [Helicobacter pylori
52]
Length = 72
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y IA K
Sbjct: 8 HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 67
Query: 264 RIASV 268
R+
Sbjct: 68 RLNLF 72
>gi|21230526|ref|NP_636443.1| DNA methylase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|21112097|gb|AAM40367.1| possible DNA methylase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 972
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 24/169 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W++++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 162 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNTGH 221
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L+ R +L +G+++V N+ R+ +
Sbjct: 222 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRAV 279
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
L + F N + + + N + ++W + + K Y
Sbjct: 280 LDEV-FGEDNFVSMIQVQKTGSQASNLLANTVDFVLWYARTKKKVKYRQ 327
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
++ Q +++ R L+ ++ PGD++LDP GSGT+ VA++ R ++ I+ + + +A
Sbjct: 455 IYVVQTATSVVERCLLMASDPGDLVLDPTCGSGTTAYVAEQWGRRWVTIDTSRVALALAR 514
Query: 263 KRI 265
RI
Sbjct: 515 ARI 517
>gi|167856572|ref|ZP_02479277.1| hypothetical protein HPS_06689 [Haemophilus parasuis 29755]
gi|167852303|gb|EDS23612.1| hypothetical protein HPS_06689 [Haemophilus parasuis 29755]
Length = 589
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 59/173 (34%), Gaps = 11/173 (6%)
Query: 4 KNSLAINENQNSIFEWKD-KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
+ N + K+ +I+G+++ L+ L ++ I+ DPPYN +Y
Sbjct: 25 EKQYDFKANSDKPENSKNNMLIQGDNLLALKSLLPKYEGKINCIYIDPPYNTGNEKWVYN 84
Query: 60 PDHSL-------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + + V + S + + L R+L +G + + +
Sbjct: 85 DNVNDPRIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLADDGVIIIHIDENEYT 144
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ ++L + + P ++ HE+++ + +
Sbjct: 145 NLHSILIEIFGKTNDLGTIIWDKRNPKGDSQKISYQHESIVLFGKNQFHTTHK 197
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 52/274 (18%), Positives = 87/274 (31%), Gaps = 30/274 (10%)
Query: 49 YNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
YNL L D V+ W K F + + NG ++
Sbjct: 235 YNLSTEILEQNKLIADLEWVNQEYQDWLKKQDFSN--------GEKAYKFIDENGDIFQT 286
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
S + + F L V +K P+P R E ++ +
Sbjct: 287 VSM--AWPNKEKAPDEYFIPLIHPVTKKECPIPEKGWRYPLVTMEKMLKNNEIIFGADEV 344
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+ E++ + ++ ++ + + G KP + +L S KP
Sbjct: 345 TQPRSKYLLKENLYENTPSILAFGGSDDKFQKEIG-IHFENPKPNEFSTELLSSFLKPNS 403
Query: 226 IILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
I+LD F GSGT+ R FIGIEM +I +RI V +
Sbjct: 404 IVLDSFMGSGTTAHAVLNLNAKDGGNRQFIGIEMMDYAENITAERIRRV-------INGY 456
Query: 280 TGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
K + G+ L ++ GN++
Sbjct: 457 GSKAETQKGTGGGF---SFYTIGETLFDSDGNLN 487
>gi|209522912|ref|ZP_03271469.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|209496499|gb|EDZ96797.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 886
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/213 (17%), Positives = 80/213 (37%), Gaps = 29/213 (13%)
Query: 18 EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQL--------------- 57
W +++I G+S+ + L A V +I+ DPPY ++
Sbjct: 164 NWVNRMILGDSLITMNSLVQYEGMAGKVQMIYMDPPYGVKFGSNFQPFVKKRDVKHNEDE 223
Query: 58 -YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ + +V A D+W+ +Y ++ R LL R +L +G+++V S N+ +
Sbjct: 224 HFTREPEMVKAYRDTWELG--LHSYLSYLRDRLLLARELLTESGSVFVQISDENVHHVRE 281
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
++ + P +R + + L+W + + + ++ +
Sbjct: 282 LMDEVFGAENFFSFISYKTSSP-LGAKRLPSVCDYLLWYAKDKEKVKFKQVFEQ-----K 335
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
D +++ ER + E+L P P
Sbjct: 336 DFGEGTEFTWIEEPNGERRKMTTEERLKPQNIP 368
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K + + ++ R L+ +T PGDI+LD GSGT+ VA++ R +I ++ + + +A
Sbjct: 456 KQYVVETQPKIIERCLLMTTDPGDIVLDITCGSGTTAYVAEQWGRRWITCDVSRVPLALA 515
Query: 262 TKRI 265
+R+
Sbjct: 516 RQRL 519
>gi|260581888|ref|ZP_05849684.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
NT127]
gi|260095081|gb|EEW78973.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
NT127]
Length = 752
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 26/186 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPYN +G Y DKF
Sbjct: 230 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN-------------DKF- 275
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKS 134
+ + F + L + +L +G ++V + + ++ + +N I+ S
Sbjct: 276 NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDEIFERENFINTIIPEMS 335
Query: 135 NPMPN-----FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
N N +G++F E ++ + T A + D +
Sbjct: 336 NASGNKIKHAIKGKKFPKLKEYILLYAKDKNQINLTIPKQAKEKW--DKEYNQIIPELTL 393
Query: 190 SGSERL 195
ER+
Sbjct: 394 QSFERI 399
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
A N + + W +G + + G +KPE LL IL +TK GDIILD
Sbjct: 523 AFAEINSSIYIGDIWFKITTTGG--VAQEGGVNFTNGKKPEQLLKIILDCATKKGDIILD 580
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 581 FHLGSGTTAAVAHKMNRQYIGIEQMDYIKTLAVERLKK 618
>gi|303232411|ref|ZP_07319103.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae PB189-T1-4]
gi|302481495|gb|EFL44563.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae PB189-T1-4]
Length = 576
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 12/168 (7%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ + E + + + +++G+++ L+ L +D+I+ DPPYN +
Sbjct: 64 IPVLTEVKEREIKATDENAYNFLLEGDNLHSLKLLEKTHAGKIDVIYIDPPYNTGNKDFI 123
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y DA D D S + +F L +R+L +G +++ + +
Sbjct: 124 YD------DAFIDKTD-GYSHSKWLSFMSERLEIAKRLLSDDGVIFISIDDREQSNLHLL 176
Query: 118 LQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ + +W K++ + N L +A+ A
Sbjct: 177 CDDIFGSNNFITSFIWEKTHHTGKQAKNCYCNVDYVLAYANKLYGANC 224
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
S + GS L+ GE + KP +L+ ++ T + ILD F GSGT
Sbjct: 358 KTGNSQQVGTNEDGSSLLKKILGETIPFSYPKPISLVKYLVELCTNKKNTILDFFAGSGT 417
Query: 237 SGAVAKK------LRRSFIGIEMKQDYI--DIATKRIAS 267
+ + R FI ++ I ++ +RI
Sbjct: 418 TAHAVLELNKEDGGNRKFILCTNNENNICEEVTYERIKR 456
>gi|325981246|ref|YP_004293648.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosomonas sp.
AL212]
gi|325530765|gb|ADZ25486.1| DNA methylase N-4/N-6 domain protein [Nitrosomonas sp. AL212]
Length = 1039
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/331 (14%), Positives = 104/331 (31%), Gaps = 48/331 (14%)
Query: 18 EWKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQL----------YRPDH 62
+W +++I G+S+ V+ L A V +I+ DPPY ++ R D
Sbjct: 218 DWSNRLIAGDSLLVMNSLLQKEGMAGQVQMIYLDPPYGIKYGSNFQPFVNKRDVKDRKDE 277
Query: 63 S------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
++ A D+W+ +Y + R LL + +L +G+++V S N+ +
Sbjct: 278 DLTQEPEMIKAFRDTWELG--IHSYLTYLRDRLLLAKELLHESGSVFVQISDENLHHVRE 335
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ + + + + + + L+W Y Y +
Sbjct: 336 ICDEIFGKDNFISLVCFRKKLMPLGAKTLEQMSDFLVWYGRDVSKTKYRHMYRVTVPDLK 395
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV---SSTKPGDIILDPFFG 233
RL + Q P+++ + S ++ D + F G
Sbjct: 396 GRWTGLCDKDLNLR---RLSKEQKTGFRDGQIPDSIFGTVSQWAPSYSEANDFVFS-FEG 451
Query: 234 ------SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
G + + + ++ +++ A R + T P
Sbjct: 452 KQYQPSLGQCWVASPQKMERLK--KARRLFVEGAYPRFVTFHKDFEFAKLTAPWDDTAPA 509
Query: 288 VAFNLLVERGLI----------QPGQILTNA 308
+V+ I PG ++ +
Sbjct: 510 QDKTYVVQTNEIVITRCLLMTTDPGDLILDP 540
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K + Q E +++R L+ +T PGD+ILDP GSGT+ VA+K R +I + + + +
Sbjct: 511 DKTYVVQTNEIVITRCLLMTTDPGDLILDPTCGSGTTAFVAEKWGRRWITCDTSRVAVTL 570
Query: 261 ATKRIASVQ------PLGNIELTVLTGKRTEPRVAFNLL 293
A +R+ + + L +T P V +
Sbjct: 571 AKQRLMTASYDYFELKYPHEGLKSGFIYKTVPHVTLKSI 609
>gi|225155635|ref|ZP_03724124.1| DNA methylase N-4/N-6 domain protein [Opitutaceae bacterium TAV2]
gi|224803608|gb|EEG21842.1| DNA methylase N-4/N-6 domain protein [Opitutaceae bacterium TAV2]
Length = 315
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/301 (15%), Positives = 89/301 (29%), Gaps = 52/301 (17%)
Query: 22 KIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ G+ I + KL S+DL P+ R D
Sbjct: 6 TLHFGDCIEGMATKLAPDSIDLCVTSIPFGALFMYSGKREDIGNNRDCLMVERHADMLAD 65
Query: 81 -YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-- 137
+ R W+ RV++P + + I ++ D+ M
Sbjct: 66 QFGLHMRFWVAQLLRVMRPGRNICIH-----IQQLLKYANQHGAMGRRDLRNATVRMMEL 120
Query: 138 ------------PNFRGRRFQNAHETLIWASPSPKA------------------------ 161
N + +N L++A+ A
Sbjct: 121 GGFEWKAEFAIPKNPQAMAQRNNLHCLMFATGKRDAVDLGPAPNDFVLVFQKPGENAVPV 180
Query: 162 ---KGYTFNYDALKAANEDVQMRS----DWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
+ N A E ++ S D + + E+ H ++
Sbjct: 181 PALRDENANPRGWVATEEWIKWASGVWDDIRETDVLDGWKSARETDEERHVCPLQLEVIR 240
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
R + T PG+++LDPF G G++ V+ + R +G E+K+ Y +++ + +
Sbjct: 241 RCVKLYTNPGELVLDPFMGIGSTAYVSVEQGRRAVGFELKESYHNLSIRNLEKQAHDMRE 300
Query: 275 E 275
Sbjct: 301 A 301
>gi|260854632|ref|YP_003228523.1| putative DNA methylase [Escherichia coli O26:H11 str. 11368]
gi|257753281|dbj|BAI24783.1| putative DNA methylase [Escherichia coli O26:H11 str. 11368]
gi|323157258|gb|EFZ43378.1| DNA methylase family protein [Escherichia coli EPECa14]
Length = 349
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---EGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
H L N + ++ + + RG + H+ + S + YT
Sbjct: 192 HWFGISQWQLPNEGDYNKLQALFARVAAEKHQRGELEKPHHQLVSTYSELN--RQYTELL 249
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
K + + + ++ G+ HP +KP +L +I+ +S++PGD++
Sbjct: 250 SEYKNLRRYFGVTAQVPYTDVWTHKPVQYYPGK--HPCEKPAEMLQQIINASSRPGDLVA 307
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
D F GSG++ A L R IG+E++ +
Sbjct: 308 DFFMGSGSTVKAAMALGRCAIGVELETGRFEQT 340
>gi|167747634|ref|ZP_02419761.1| hypothetical protein ANACAC_02355 [Anaerostipes caccae DSM 14662]
gi|167652996|gb|EDR97125.1| hypothetical protein ANACAC_02355 [Anaerostipes caccae DSM 14662]
Length = 322
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 60/274 (21%), Positives = 100/274 (36%), Gaps = 26/274 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K + + + +I+GN L L S+D I D PY L L +
Sbjct: 64 KGVYTVTKKNAENEDITCMLIQGNGRD-LSFLEDNSIDAIITDHPY--LLKKSLKGGNR- 119
Query: 64 LVDAVTDSWDKFSSFEAYDAF--TRAWLLACRRVLKPNGTLWVI-----GSYHNIFRIGT 116
F +YD F T+ L RVLK L G +
Sbjct: 120 -------------DFASYDLFQYTQQDLDEKFRVLKKGHFLVEFLPEENGDNYEYLYQVK 166
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ + + V + + GR+ +N E ++ S A+ + KA E
Sbjct: 167 AMAKESGFEYYAKVAWRKGTIVANTGRKAKN-TEDILLFSKGR-ARDMRPDAKKDKAEPE 224
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
S + + + +++H ++KP LL +IL T +++LD + GS
Sbjct: 225 MKHYMSGAKGMLPTAFDIQPISKADRVHQSEKPVELLKQILEFVTDKKELVLDQYAGSFA 284
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
A + R I IE+ Q+Y + KRI +V+
Sbjct: 285 LAEAALESERDSISIEISQEYFEEGKKRIENVKK 318
>gi|121534470|ref|ZP_01666293.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermosinus
carboxydivorans Nor1]
gi|121306963|gb|EAX47882.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermosinus
carboxydivorans Nor1]
Length = 654
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 58/167 (34%), Gaps = 19/167 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQLYRPD 61
E+ + ++ I+G+++ VL+ L + +I+ DPPYN + ++ +
Sbjct: 85 EDSKNPDTTENLYIEGDNLEVLKLLRNSYYNKIKMIYIDPPYNTGNDFIYRDDFKVSEEE 144
Query: 62 HSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
++L++ D + + + L + +L +G +++ + +
Sbjct: 145 NALLEGEKDEYGERLIVNQKSNGRFHSNWLSMIYPRLKVAKDLLTEDGVIFISIDDNEVH 204
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + + + +N E ++ +
Sbjct: 205 NLKKICDEIFGEENFIACFTWVKKKKGSHLSKTIRNMVEYILLFGKN 251
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 207 QKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP +LL ++ + +LD F GS T+ + R FI +++
Sbjct: 403 PKPVSLLKYLINTIGYFNKEFTVLDFFSGSATTAHAVMQLNAEDGGNRKFIMVQL 457
>gi|238751722|ref|ZP_04613210.1| Site-specific DNA-methyltransferase (Adenine-specific) [Yersinia
rohdei ATCC 43380]
gi|238709993|gb|EEQ02223.1| Site-specific DNA-methyltransferase (Adenine-specific) [Yersinia
rohdei ATCC 43380]
Length = 632
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 20/199 (10%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--- 68
K+ +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 88 DWDNTKNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLEI 147
Query: 69 -----------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY---HNIFRI 114
T++ + L + +L+ +G + V N+ ++
Sbjct: 148 TGQTEEGSRRSTNTETSGRYHTDWLNMMYPRLKLAKNLLRKDGVIAVNVDDIESDNVKKM 207
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ + +I N + K P + + H L
Sbjct: 208 CSEIFGEENFIANIVWQSKDTPGNDSISIAQTHNHLFLYHNGQLSLNLLDRNEKQLSNYK 267
Query: 175 NEDVQMRSDWLIPICSGSE 193
N D R WL + SE
Sbjct: 268 NPDNDPRGVWLATPLTRSE 286
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
N+ + +E DG K+ T KP L+ R++ T +++D F GS
Sbjct: 353 NQTWWPYDFAGSTRNANAEIKSLFDGVKVFDTPKPTKLIVRLISMITNKDSLVMDFFAGS 412
Query: 235 GTSGAVAKKL------RRSFIGIEM 253
GT+G R++I I++
Sbjct: 413 GTTGHAVYLKNKEDGGNRNYILIQL 437
>gi|293433587|ref|ZP_06662015.1| DNA methylase [Escherichia coli B088]
gi|291324406|gb|EFE63828.1| DNA methylase [Escherichia coli B088]
Length = 352
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPNGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YMDVWTHKPVQYYHGK--HPCEKPAEMLHQIISASSRPGDLVADFFMGSGSTIKAAMSLG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ + +
Sbjct: 325 RRAIGVELETERFEQT 340
>gi|208779528|ref|ZP_03246873.1| DNA methylase domain protein [Francisella novicida FTG]
gi|208744489|gb|EDZ90788.1| DNA methylase domain protein [Francisella novicida FTG]
Length = 716
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 31/234 (13%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRP 60
K A E ++ +I+G++I L+ L A + +I+ DPPYN + +Y
Sbjct: 87 KELKAELEQSKDFDNTENVVIRGDNIDTLKILRANYTNKIKMIYIDPPYNTKSENFVYND 146
Query: 61 DHSLVD-------AVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ + + + F S + +F L R +LK +G +++
Sbjct: 147 NFKKNEEELIKEFGLAEETQNFLTNVYGTRSHSGWLSFMYPRLKIARELLKEDGVIFISI 206
Query: 107 SYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---SPKAK 162
+ + + + G N LI+A
Sbjct: 207 DDNEQANLKIICDEIFGEENFVGDIVWNGQSGAEDDGFLRNNKEFFLIYAKNVNLFNVGL 266
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSER----------LRNKDGEKLHPT 206
N ++ + L+ + R +++ G +PT
Sbjct: 267 KDKENQKFNLYDDKRKERYKRQLLRKWGDNSRREDRQNLYYPIKDNKGNDFYPT 320
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 21/199 (10%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD-AFTRAWLLACRRVLKPNGTLWVIGS 107
+N+ L + ++ + D E Y R W RR L+
Sbjct: 262 FNVGLKDK----ENQKFNLYDDKRK-----ERYKRQLLRKWGDNSRRE--DRQNLYYPIK 310
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ L N + + + + + ++
Sbjct: 311 DNKGNDFYPTLPNGDDGRWRWKTSTMQQAINDGLVEFAKARDGNIEAYEKIYESDEERK- 369
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG-DI 226
K D+ S +G+++++ G + KP ++ ++ S DI
Sbjct: 370 TQKYKTLETDIGSSS-------TGTKQIKELFGVSVFSNPKPITAVNHLIGISNLQDKDI 422
Query: 227 ILDPFFGSGTSGAVAKKLR 245
+LD F GSGT+G +L
Sbjct: 423 VLDFFAGSGTTGDAVMQLN 441
>gi|157156068|ref|YP_001462540.1| DNA methylase [Escherichia coli E24377A]
gi|157078098|gb|ABV17806.1| DNA methylase [Escherichia coli E24377A]
Length = 348
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRQRFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD+++D F GSG++ A L R IG+E++++ +
Sbjct: 283 HPCEKPADMLRQIITASSRPGDLVVDFFMGSGSTIKAAMTLGRRAIGVELEKERFNQT 340
>gi|187777772|ref|ZP_02994245.1| hypothetical protein CLOSPO_01364 [Clostridium sporogenes ATCC
15579]
gi|187774700|gb|EDU38502.1| hypothetical protein CLOSPO_01364 [Clostridium sporogenes ATCC
15579]
Length = 652
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 20/220 (9%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ L + +I+ DPPYN + +
Sbjct: 79 EESKNWDTTENLYIEGDNLEVLKLLQKSYQNKIKMIYIDPPYNTGNDFVYKDDYKDNLKN 138
Query: 68 VTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + + L R +LK +G +++ +
Sbjct: 139 YLEITGQVDEEGNRTSTNSDTGGRYHTNWLNMMYPRLRLARNLLKDDGVIFISIDENEHD 198
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ + + N N + HE +++ +
Sbjct: 199 NLKLICDEIFAEYNFAGEIVWKNGSKNDQ-DYISMQHEYIMFYVRDKNFNKGDWKEKKEG 257
Query: 173 AANEDVQMRSDWL-IPICSGSERLRNKDGEKLHPTQKPEA 211
+ + G R K +P P +
Sbjct: 258 LDDIFRAFEGFYKECGDNWGEIHKRALSWFKQYPESNPIS 297
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 36/217 (16%), Positives = 58/217 (26%), Gaps = 20/217 (9%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP---------- 98
+ ++ + + D + F F Y W +R L
Sbjct: 239 FYVRDKNFNKGDWKEKKEGLDDIFRAFEGF--YKECGDNWGEIHKRALSWFKQYPESNPI 296
Query: 99 -NGTLWVIGSYHNIFRIGTMLQNLNFWILN----DIVWRKSNPMPNFRGRRFQNAHETLI 153
N + N + N + +K P+ + + I
Sbjct: 297 SNSKHYTWFDDINGVYFPDNISGPNDGQYVYDILHPITKKPVKKPSRGWFCPLESMQVKI 356
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQ--MRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
K T + + S S+ L+N G K K
Sbjct: 357 KEGKIHFGKDETTVPCLKTYLKDTQYQSLTSVKFKDGRVASKYLKNLLGGKYFNNPKDSD 416
Query: 212 LLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRS 247
LL I S + DI+LD F GSGT+ K+
Sbjct: 417 LLEGIFKSIGLEKEDIVLDFFSGSGTTAQAIMKMNTK 453
>gi|291460839|ref|ZP_06025457.2| type III restriction-modification system methyltransferase
[Fusobacterium periodonticum ATCC 33693]
gi|291380432|gb|EFE87950.1| type III restriction-modification system methyltransferase
[Fusobacterium periodonticum ATCC 33693]
Length = 622
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/220 (10%), Positives = 58/220 (26%), Gaps = 21/220 (9%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ L + +I+ DPPYN + + ++
Sbjct: 75 EESKNWDNTENIYIEGDNLEVLKLLQKSYYGKIKMIYIDPPYNTGKDFVYKDNFRANIEN 134
Query: 68 VTDSWDK---------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + L R +L +G +++
Sbjct: 135 YKKVTGQVSEEGTKLTTNTDTDGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDSEQA 194
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP---SPKAKGYTFNYD 169
+ + + + + + + HE ++ + +
Sbjct: 195 NLKKLCDEIFGEENFVADFIRKGFGGRQDSQYYAVIHEYVLCYVKNKSFFVSGKIIKKDE 254
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+E + G R + P
Sbjct: 255 KYPFYDEKKNKFYKVQLLRKWGENSKRQDRPNLYYSIMDP 294
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 13/214 (6%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
Y + L + K + YD + ++L+ G
Sbjct: 227 YAVIHEYVLCYVKNKSFFVSGKIIKKDEKYPFYDEKKNKFYKV--QLLRKWGENSKRQDR 284
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
N++ +++ + + + + ++ I K
Sbjct: 285 PNLYY--SIMDPDGNEHYPKLSESEDGCWRWGKEKMQESIKNGFIEFKKRDKEWVAYEKI 342
Query: 169 DALKAANEDVQMRS--DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGD 225
E Q+ + I +G+ L+ EK+ KP L+ +L+
Sbjct: 343 FEPILGEEKTQLYTTIIENISNNTGASLLKLLFEEKIFNYPKPVDLIKNLLLIGGINKNS 402
Query: 226 IILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
IILD F GS T+ + R +I +++
Sbjct: 403 IILDFFSGSATTAHSVMQLNAEDGGNRKYIMVQL 436
>gi|323139912|ref|ZP_08074936.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
gi|322394829|gb|EFX97406.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
Length = 237
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 9/193 (4%)
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
S + F +L L P L + + + + ++ + +L VW K +
Sbjct: 1 MSEAEFTKFLTEFLQTTSASLVPGAVLSIFMDWRHQREVLNAARSTSLTLLCVCVWNKGS 60
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
G +++ HE + + W P +G R
Sbjct: 61 GGM---GSLYRSQHELVFVLKKGGAPHKNRVQLGRH-----GRCRTNVWNYPGLAGFGRD 112
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R + HPT K A+++ + + GD+++DPF GSGT+ A K R IE++
Sbjct: 113 RQQQ-LADHPTVKNCAMIADAIRDVSDRGDLVIDPFSGSGTTIIGAAKTGRRACAIELEP 171
Query: 256 DYIDIATKRIASV 268
Y D+A +R
Sbjct: 172 KYTDVAIRRWEKW 184
>gi|260843572|ref|YP_003221350.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
gi|257758719|dbj|BAI30216.1| putative DNA methylase [Escherichia coli O103:H2 str. 12009]
Length = 352
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LVNADCLEFIRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|115289054|gb|ABI85539.1| M.Hin1056ModP-6 [Haemophilus influenzae]
Length = 351
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 24/164 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPYN +G Y DKF
Sbjct: 202 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN-------------DKF- 247
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L R +L +G ++V + + ++ + + + +
Sbjct: 248 NHSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEIF--GRENFICCITCK 305
Query: 137 MPNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ + G F + E I S S + Y + N
Sbjct: 306 VKSAGGLTTDTEMFFDCAEYFIVYSKSIDSLQYNSIKIQTEVIN 349
>gi|332289379|ref|YP_004420231.1| putative methyltransferase [Gallibacterium anatis UMN179]
gi|330432275|gb|AEC17334.1| putative methyltransferase [Gallibacterium anatis UMN179]
Length = 585
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/210 (12%), Positives = 62/210 (29%), Gaps = 21/210 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------GQLYR 59
+ I+G ++ VL+ L SV +I+ DPPYN + G
Sbjct: 68 NVFIEGENLEVLKILQKSYFNSVKMIYIDPPYNTGNDFIYKDNFAESQADYAEKVGDKDE 127
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
V +S + + L R +L+ +G +++ + ++ +
Sbjct: 128 AGKLKRAFVKNSKENGHYHSNWLNMMLPRLHLARNLLRDDGVIFISIDDNEQAQLKLLCD 187
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + +N HE ++ + + K +
Sbjct: 188 EVFGEENFVAGFIWNNKYTVSNDTDVSYQHENIVCYAKNRHNFSLHLLERTEKQNKDYRN 247
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D + R+ ++ + P
Sbjct: 248 RDNDPKGAWKATPIHARSGSASGIYTIEFP 277
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
+ + + T+ + + + + S +E + + G+ + K LL
Sbjct: 307 YFNKNGGIDKKTYLSEVRQGVTCGTMWSYEDVGHSHSNNEEIASILGKGIFNDPKGTRLL 366
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
++I+ + +ILD F GS T+ + R FI +++
Sbjct: 367 NKIIKLGSDKNSLILDFFAGSATTAHAVMQLNAEDGGNRRFICVQL 412
>gi|115289051|gb|ABI85537.1| M.Hin1056ModP-6 [Haemophilus influenzae]
Length = 351
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 24/164 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPYN +G Y DKF
Sbjct: 202 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN-------------DKF- 247
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L R +L +G ++V + + ++ + + + +
Sbjct: 248 NHSTWLTFMKNRLEVARELLSDDGVIFVQCDDNEQAYLKVLMDEIF--GRENFICCITCK 305
Query: 137 MPNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ + G F + E I S S + Y + N
Sbjct: 306 VKSAGGLTTDTEMFFDCAENFIVYSKSIDSLQYNSIKIQTEVIN 349
>gi|218688833|ref|YP_002397045.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia coli ED1a]
gi|218426397|emb|CAR07223.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia coli ED1a]
Length = 352
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + P SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSFPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 325 RRATGVELETERFEQT 340
>gi|331090073|ref|ZP_08338962.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
gi|330402535|gb|EGG82104.1| DNA methylase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 233
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/247 (17%), Positives = 75/247 (30%), Gaps = 31/247 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
N + + + P K D+ DPPY N + Y + ++ + +D
Sbjct: 6 FYNMNCMDGMREFPDKFFDIAVVDPPYFAGPNKRRYYGRSESTTLI--KCREYDIIDTWD 63
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ RV S H I +SN +
Sbjct: 64 VPGMEYFDELIRV-----------SRHQIVWGCNYFDYHFGSGRIVWDKCRSNMTFSDAE 112
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
+ + H+T+ + D + + + +
Sbjct: 113 IAYCSLHDTVKTFRYMWDGMMQGKSVDEGWIQKGN------------------KKTNEHR 154
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+HPTQKP L I KPG +LD GS +S + ++G E+ + A
Sbjct: 155 IHPTQKPIDLYRWIAREYIKPGWNVLDTHTGSASSLIAYHEAGIRYVGFEINEKMYQKAR 214
Query: 263 KRIASVQ 269
KR+ V+
Sbjct: 215 KRLKEVE 221
>gi|193062677|ref|ZP_03043771.1| DNA methylase [Escherichia coli E22]
gi|192931799|gb|EDV84399.1| DNA methylase [Escherichia coli E22]
Length = 348
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHRPVQYYPGK--HPCEKPADMLRQIIEASSRPGDLVADFFMGSGSTIKAALSLE 324
Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
R IG+E+ + + I ++
Sbjct: 325 RRAIGVELDEGRFNQTVTEIKNIC 348
>gi|116334205|ref|YP_795732.1| adenine specific DNA methylase Mod [Lactobacillus brevis ATCC 367]
gi|116099552|gb|ABJ64701.1| Adenine specific DNA methylase Mod [Lactobacillus brevis ATCC 367]
Length = 289
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 18/176 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY-----R 59
+N+ + K+ G+++ VL L VD+I+ DPPYN +G +Y
Sbjct: 82 DEKQNRGEGRDSKNLFFTGDNLEVLRHLQNNYQNKVDVIYIDPPYNTGSDGFVYPDAFEY 141
Query: 60 PDHSLVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D L + D+ S A+ F L+ +++L G +++ +
Sbjct: 142 SDDKLKGMFSLDDDQVERLKSIQGKSSHSAWLTFMYPRLVLAKQLLSDKGIIFISIDDNE 201
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+G ++ P + + E ++ + + Y
Sbjct: 202 NSDLGLLMNTIFGERQFKVQFIWTKTETPPALSKYSRRTTEYVLTFEKNSFGEKYY 257
>gi|323141495|ref|ZP_08076383.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
12067]
gi|322414011|gb|EFY04842.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
12067]
Length = 670
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 10/162 (6%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ ++ S ++ II G+++ L+ L + I+ DPPYN +
Sbjct: 45 LERQYSFDEAGKHEEDNGSENMIIHGDNLLALKSLLPKYEGKIKCIYIDPPYNTGEENWV 104
Query: 58 YRPDHSLV-------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
Y + + + V + + + + L ++L +G + V +H
Sbjct: 105 YNDNVNDEQIKKWIGEVVGKEGEDLTRHDKWLCMMYPRLKLLAKLLSVDGVMAVSIGFHE 164
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ + +L+ + +V +++ G + +
Sbjct: 165 LNPLVLLLKEIFSIRQVTVVTVQTSGGKPKDGFNYVQEYIVF 206
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 183 DWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
D L GS L + GEK + P KP L+ I+ TK DIILD F GS T+
Sbjct: 385 DKLYYTNRGSNELTSALGEKGVFPYPKPVKLIEDIISRVTKENDIILDSFAGSATTAHAV 444
Query: 242 KKL------RRSFIGIEMKQDYIDIATKRIAS 267
+ R FI IEM I +R+
Sbjct: 445 LNMNKADGGNRKFICIEMMDYADTITAERVKR 476
>gi|227821729|ref|YP_002825699.1| modification methylase EcaI [Sinorhizobium fredii NGR234]
gi|227340728|gb|ACP24946.1| modification methylase EcaI [Sinorhizobium fredii NGR234]
Length = 568
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 19/214 (8%)
Query: 69 TDSWDKFSSFEAYD-AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW-IL 126
W+ S F YD + + +G L+ + S N L
Sbjct: 179 DRKWNGESLFIPYDLENVPKSIAEKYTMEDGDGRLYQLTSLINPSPDRPNLTYEFMGVTR 238
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
R G Q+A + + D SD
Sbjct: 239 VWRWTRDRMENARQAGLIHQSAPGRVPRLKRYLDEQRGMPLGDVW----------SDIPP 288
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
ERL +PTQKP LL R++ + T GD++LDPF G GT+ A A+K +R
Sbjct: 289 LNSQARERL-------GYPTQKPVRLLDRLIKAMTDEGDVVLDPFCGCGTTVAAAQKSQR 341
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
+IGI++ I + +R+A++ L +
Sbjct: 342 HWIGIDVAYHAIKVIEERLAALMGGTEYTLGGIP 375
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 38/174 (21%)
Query: 20 KDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPD------HSLVDAVTDSW 72
+++ G+++++L + + +SVDL++ DPP+N N + + V+A D+W
Sbjct: 1 MNQLWFGDNLTILREEIATESVDLVYLDPPFNSNANYNVLFRTPADEAASAQVEAFRDTW 60
Query: 73 DKF------------------------------SSFEAYDAFTRAWLLACRRVLKPNGTL 102
S AY L RRVLKP G+L
Sbjct: 61 TWGAEAQWAFDEIMRAGGSIAAIVNALHSALGESDMMAYLVMMAQRLHELRRVLKPTGSL 120
Query: 103 WVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ + +L ++ + K RR H+ ++
Sbjct: 121 LLHCDPTASHYLKIILDAIFGPERFSNEIIWKRTMGKGLMTRRLPTNHDVILCY 174
>gi|110632903|ref|YP_673111.1| DNA methylase N-4/N-6 [Mesorhizobium sp. BNC1]
gi|110283887|gb|ABG61946.1| DNA methylase N-4/N-6 [Chelativorans sp. BNC1]
Length = 657
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 28/200 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG-------------QLYRPDHS 63
K+ I+G+++ L+ + + LI+ DPPYN + ++ + S
Sbjct: 99 KNLFIEGDNLQALKLIQDTYLGQIKLIYVDPPYNTGKDFIYRDSFASDQNTHEIASGERS 158
Query: 64 LVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
A V +S + L + +LK +G ++V R+ ++ +
Sbjct: 159 EEGARLVANSEGNGRFHSNWLTMIAPRLRLAKNLLKRDGAIFVSCDEGEQPRLRLIMDEI 218
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ N R +HE ++ + ++ N + + +
Sbjct: 219 FGQSNFVADMVWAAGRKNDS-RLVSVSHEYIVCYAR--DSEYLRENQVIWRQRKKGLDEI 275
Query: 182 SDWLIPICSGSERLRNKDGE 201
ERL+ + G
Sbjct: 276 YAQY-------ERLKRQHGN 288
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 13/199 (6%)
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNLNFWILNDI-VW 131
+ F+A + W + + ++ + ++
Sbjct: 286 HGNDFKAMTEGMKEWYRSLADSHPSKAHKHYAHVDVRGVYFPDNISWPGGGGPKYEVLHP 345
Query: 132 RKSNPMPNFRGRRFQNAHETLIWA-----SPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
R P+ + + + + + E S +
Sbjct: 346 RTKRPVKVPSRGWMTSDPKRMQEWIDDDRVHFGDDENSVPCIKSYLKDKEVQTPYSVFYQ 405
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL-- 244
+ S+RLR G L K E +L ++ T+ DIILD F GS T+
Sbjct: 406 DGRAASKRLRALMGGDLFDFPKDELVLQEVIEMMTEGSDIILDFFAGSSTTAHSVMLQNA 465
Query: 245 ----RRSFIGIEMKQDYID 259
R FI +++ + +
Sbjct: 466 KDGANRKFIMVQLDEAAAE 484
>gi|294668826|ref|ZP_06733919.1| putative type III restriction-modification system EcoPI,
modification subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309343|gb|EFE50586.1| putative type III restriction-modification system EcoPI,
modification subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 582
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 11/166 (6%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSL-------VDAVTD 70
+ +I G+++ L+ L + ++ I+ DPPYN +Y + + + V
Sbjct: 43 NILIHGDNLLALKSLLPEFGGKINCIYIDPPYNTGEEKWVYNDNVNDPRIKKWLGEVVGK 102
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ FS + + L +++L +G +++ + + + +
Sbjct: 103 EGEDFSRHDKWLCMMYPRLKLLKQLLAEDGVIFISIDDNEQACLKLICDEIFGGGFIGCF 162
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
N R +N HE ++ + A E
Sbjct: 163 VHNKLNSKNDRTNIQKN-HEYILVYYKRNSSSPIDIVSVANDKIKE 207
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQD 256
+ K +++ ++ P +ILD F GSGT+ R FIG+EM
Sbjct: 374 VFKYPKNVSMIEYLICLIDNPNALILDSFSGSGTTAHAVLSLNQKDGGNRRFIGVEMMDY 433
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
+I +RI V+ G T+P G+ L
Sbjct: 434 AENITAERIR----------RVINGYGTKPETQNGTGGGFSFYTVGEPLFQDDN 477
>gi|209919268|ref|YP_002293352.1| putative phage DNA methylase [Escherichia coli SE11]
gi|209912527|dbj|BAG77601.1| putative phage DNA methylase [Escherichia coli SE11]
Length = 348
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S+ PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPADMLRQIITASSHPGDLVADFFMGSGSTIKAALSLG 324
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R IG+E +++ + I
Sbjct: 325 RHAIGVEQEEERFNQTVSEIKE 346
>gi|118595064|ref|ZP_01552411.1| DNA methylase N-4/N-6 [Methylophilales bacterium HTCC2181]
gi|118440842|gb|EAV47469.1| DNA methylase N-4/N-6 [Methylophilales bacterium HTCC2181]
Length = 380
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 67/287 (23%)
Query: 22 KIIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
KII G+S+ + K K SV+LI PP+ L L+ + Y ++S E
Sbjct: 81 KIICGDSLKWMAKAENKKSVNLIVTSPPFGL-LSKKSYGNENS---------------EN 124
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG-----------SYHNIFRIGTMLQNLNFWILNDI 129
Y + R++ + +VL +G+L + S ++ + + + F++ +
Sbjct: 125 YCDWFRSFAESFNQVLADDGSLVIDIQGVWSKGIPARSLYHFKLLQMLCEEYGFYLCQEH 184
Query: 130 VWRKSNPMPNF------RGRRFQNAHETLIWASPSPKAKGYTFNY--------------- 168
W + +P+ + R ++A + W S +P K
Sbjct: 185 YWWNPSKLPSPAEWVTVKRVRVKDAVNCIWWLSKTPNPKANNKKILTSYSESMLSVLSNG 244
Query: 169 --------------DALKAANEDVQMRSD----WLIPICSGSERLRNKDGEKLHPTQKPE 210
+ + N + + C K G K+HP + P
Sbjct: 245 FYNKGTRPSGHKLSKSHFSINHGGSIPPNLIVASNAASCGPYFDYCKKYGLKIHPARFPY 304
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
A+ + T D+ILDPF GS +G VA+K R +I IE D+
Sbjct: 305 AIPDYFIRFLTNENDLILDPFAGSSVTGFVAEKNNRKWIAIEKDIDF 351
>gi|330814977|ref|YP_004358682.1| type III DNA modification methyltransferase [Burkholderia gladioli
BSR3]
gi|327367370|gb|AEA58726.1| type III DNA modification methyltransferase [Burkholderia gladioli
BSR3]
Length = 677
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL------------ 64
++ +I+G+++ VL+ L SV L++ DPPYN + PD+
Sbjct: 105 RNLMIEGDNLEVLKLLHKSYAGSVKLVYIDPPYNTG--KEFVYPDNFTDSLRHYLALTGQ 162
Query: 65 ----VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + + + L +L +G + + H + + +++
Sbjct: 163 AAGGVKLSSHTEASGRFHTDWLNMMYPRLKLAFDLLARDGLIAIHIDEHELHALVLVMRE 222
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 223 IFGEENELGVAVWDKRNPKGDARGIAYQHESIVLFAR 259
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 42/213 (19%), Positives = 71/213 (33%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL---------LACRRVLKPNGTLW--VIG 106
R ++DA D+ ++ RAWL A L P G ++ V
Sbjct: 274 KRNAQRMLDAAHDAIADTTTIAEATQAYRAWLRAQTTLSGGEAMYDRLSPEGRVYRLVSM 333
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N R + F L V K P+P R L+ +
Sbjct: 334 AWPNKKRA----PDDYFIPLTHPVTGKPCPVPERGWRNPPATMRELLDKGLIEFGADEST 389
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E++ + I GS+ R K KP + ++ T D+
Sbjct: 390 QPQRIYFLDENLHE-NVPSILPFGGSDDARLKALAIPFDLPKPTDFAASLVSWLTGDDDL 448
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
I+D F GSGT+ + R F +++
Sbjct: 449 IVDCFAGSGTTAHAVMEANAADGARRRFALVQL 481
>gi|58425934|gb|AAW74971.1| site-specific DNA-methyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 162
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 65/173 (37%), Gaps = 22/173 (12%)
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
+ WL C R+LK + + + + LQ F VW K+ + GR
Sbjct: 1 MQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAVWDKTEGVRPQLGRF 60
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
A E ++W S M D P+ G R +K H
Sbjct: 61 RNQA-EYIVWGSKGG--------------------MPLDRRAPVLPGVVRTPVLKADKHH 99
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
T KP L+ ++ + G ILDPF GSGT+ A+ + G+EM Q Y
Sbjct: 100 LTGKPTELMRSLVRIC-EAGGRILDPFAGSGTTLVAAELEGYRWTGVEMTQHY 151
>gi|261866847|ref|YP_003254769.1| adenine specific DNA methylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412179|gb|ACX81550.1| adenine specific DNA methylase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 546
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/221 (12%), Positives = 77/221 (34%), Gaps = 15/221 (6%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQL---NGQ 56
+K EN + + +I G+++ L+ L ++ I+ DPPYN +G
Sbjct: 25 EKKYTYKLENVHHKNNEDNILIHGDNLLALKSLLPKYEGKINCIYIDPPYNTGKTPEDGG 84
Query: 57 LYRPDHSL--------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
D+ D V + + + + L ++L +G +++
Sbjct: 85 WTYNDNVSDPRIEKWLGDVVGKEGEDLTRHDKWLCMMYPRLKIMEKLLHEDGVIFISIDD 144
Query: 109 HNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + + + + + P + ++ + ++ K + +
Sbjct: 145 TELAHLRLVCDEIFGYQNFIECFCWEKTTTPASLSKTSRSNIDYILTYQKKNTQKIFDSH 204
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
+ K+ + V+ + + + I S ++ + ++ +K
Sbjct: 205 KEDKKSTDSPVENKDNPISTIILNSGVIKCNFPDGIYNKEK 245
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 16/116 (13%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDY 257
KP +L+S ++ + IILD F GSGT+ R FIGIEM
Sbjct: 339 FSYSKPYSLVSFLINIISNKDAIILDGFMGSGTTAHAVLNLNAKDSGNRQFIGIEMMDYA 398
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
+I +RI V + K + G+ L ++ GN++
Sbjct: 399 ENITAERIRRV-------INGYGSKAETQKGTGGGF---SFYTIGETLFDSDGNLN 444
>gi|115289060|gb|ABI85543.1| M.Hin1056ModP-3 [Haemophilus influenzae]
Length = 361
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 21/163 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L + LI+ DPPYN +G Y DKF
Sbjct: 206 ENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKYN-------------DKF- 251
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L + +L +G ++V + + ++ L + +
Sbjct: 252 NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDELFHHRETIVALTSTAS 311
Query: 137 MPN----FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
N RG + E +++ S SPK + + +N
Sbjct: 312 GVNAVNVKRGEQMFKLKEYILFYSKSPKFRFNPLLIKSPFNSN 354
>gi|217980181|ref|YP_002364231.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
gi|217508352|gb|ACK55137.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
Length = 305
Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/281 (19%), Positives = 93/281 (33%), Gaps = 63/281 (22%)
Query: 22 KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
I + + L V + + PP+ Q + +
Sbjct: 35 LIFNMDVREAMAHLTKAGVIVNCMVTSPPFYGQRDY-----------GAKGQIGLEEHPQ 83
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---------------------------- 111
+ A A + VL NG+LWV
Sbjct: 84 QFIEQLVACFEAAKPVLADNGSLWVNLGDTYWSGKGEHKSGESKQSARRFGLRPQDRTGD 143
Query: 112 -------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
R +Q+ ++ + ND VW K NP+P+ R +HE +
Sbjct: 144 GQLCKPKQLLLIPHRFAIAMQDKDWIVRNDNVWLKPNPIPDQVRDRCSMSHEYMFHLVK- 202
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
++ Y FN D + +E + + R +H + E L+ ++
Sbjct: 203 --SRWYFFNKDLVGRKSETGSILPPPDTWEIPPARRSH------MHKARFSEELVRIPIL 254
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
S+T ++LDPF GSGTS A+K IGI++K+D+
Sbjct: 255 STTPQSGVVLDPFGGSGTSLVFARKHGFRAIGIDIKKDFCQ 295
>gi|260576699|ref|ZP_05844685.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
gi|259021066|gb|EEW24376.1| DNA methylase N-4/N-6 domain protein [Rhodobacter sp. SW2]
Length = 974
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 24/201 (11%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W +++I G+S+SV+ L V I+ DPPY ++ N S
Sbjct: 130 WSNRMISGDSLSVMASLAEREGLRGQVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGDKTH 189
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L R +L +G+++V N+ R+ +
Sbjct: 190 VTREPEQVRAFRDTWK--DGIHSYLTYLRDRLTVARDLLSDSGSIFVQIGDENVHRVRAL 247
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + F N I + +++ + A Y Y+ +E
Sbjct: 248 MDEV-FGDENFIASIAVTKTSGATSLELSGVFDYVLYFAKKKSAAKYRQLYNRKTLGSEG 306
Query: 178 VQMRSDWLIPICSGSERLRNK 198
+ L P R +
Sbjct: 307 TTQYTWTLEPSDMTVSRFKGD 327
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
EK + Q ++ R ++ +T PGD++LDP GSGT+ VA++ R +I I+ + +
Sbjct: 427 SEEKTYVVQSSSKIVERCMLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVAV 486
Query: 259 DIATKRI 265
+A R+
Sbjct: 487 ALARSRL 493
>gi|261414674|ref|YP_003248357.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371130|gb|ACX73875.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 592
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 10/170 (5%)
Query: 18 EWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD-------A 67
+ ++KII G+++ L+ L V I+ DPPYN +Y + +
Sbjct: 36 KSENKIIHGDNLEALKALLPEYEGRVKCIYIDPPYNTGNENWVYNDNVNSPKIRKWLGQV 95
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
V + + + + L +++L +G +++ + + + +
Sbjct: 96 VGKESEDLTRHDKWLCMMYPRLTLLQKLLADDGAIFISIDDNEQANLKLICDEIFGAGNF 155
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + + G + E ++ D K ED
Sbjct: 156 VTQFIWQSTPGSNTGNDIKVVTEYILMYKKRFFIPNTRNIDDFEKYDLED 205
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/226 (19%), Positives = 69/226 (30%), Gaps = 22/226 (9%)
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC--RRVLKPNGTLWVIGS 107
N + + D L D D K+++ + T + ++ P+GT GS
Sbjct: 191 NTRNIDDFEKYD--LEDEYKDRRGKYTTNKLDRRMTGSHYSESLNYQIKMPDGTFLYPGS 248
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+I ++ + + + N G
Sbjct: 249 --SIDKLKHWNWRWSEAKVAWGIEHGFIVFKNNNGNWS----VYFKQYCNVNNNDELIER 302
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ ED S G+ L K KP +L+ IL +T II
Sbjct: 303 SLPYQNLLEDESFNS------ARGTADLMKIMSMKAFDYPKPISLIEEILEIATDKSSII 356
Query: 228 LDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIATKRIAS 267
LD F GSGT+ R FI +EM+ I +R+
Sbjct: 357 LDSFAGSGTTAHAVLNLNKQDGGNRKFILVEMEDYADKITAERVRR 402
>gi|308185292|ref|YP_003929425.1| type III R-M system modification enzyme [Helicobacter pylori
SJM180]
gi|308061212|gb|ADO03108.1| type III R-M system modification enzyme [Helicobacter pylori
SJM180]
Length = 459
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/190 (12%), Positives = 65/190 (34%), Gaps = 23/190 (12%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ + I + +K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNHKILKPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDD 133
Query: 62 HSLVDA--------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + S + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGLKSHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ ++ + + + + H+ ++ +
Sbjct: 194 DNEAAQLKLLCDEIFGERNFVAEMPRLVKRAGKSTNQIAKNHDYVLCYQKNSINFKQIDI 253
Query: 168 YDALKAANED 177
+ ++
Sbjct: 254 DENDYPFKDE 263
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 8/195 (4%)
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ D+ D + + +A D+ T ++ + +++ NG ++ G R+
Sbjct: 252 DIDENDYPFKDEFYNERGGYRLNQALDSNTLGYVKSLDYIIEINGKKYIAGGLTEYQRLQ 311
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ L K + +N + + + + + N
Sbjct: 312 KVNGRLADNFRWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIE---YFN 368
Query: 176 EDVQMRSDWLIPICSGSERL-----RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ S I ++ + + + KP L+S ++ +T+ GDIILD
Sbjct: 369 RTKNILSVDFIDHKYSNDMATKGLQKLFNERNIFDYSKPVELISFLIDQTTEKGDIILDF 428
Query: 231 FFGSGTSGAVAKKLR 245
F GSGT+ +
Sbjct: 429 FAGSGTTAHAVLESN 443
>gi|224437622|ref|ZP_03658575.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
gi|313144074|ref|ZP_07806267.1| modification methylase HhaII [Helicobacter cinaedi CCUG 18818]
gi|313129105|gb|EFR46722.1| modification methylase HhaII [Helicobacter cinaedi CCUG 18818]
Length = 225
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 25/239 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + + + + ++ L ++SVDL F DP Y L+ Y + ++
Sbjct: 12 IQLLNTKLNIDGLELMGSLESRSVDLCFFDPQYRGVLDKMRYGNEGERQKGRSNLVQMSE 71
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ ++++ RVLKP+ L + ++ + D++
Sbjct: 72 T------QIQSFICEIDRVLKPSCYLMLWIDKFHLCEGVKAWVKQTSLQVVDLITWDKLK 125
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ G R + E L+ +P T+ ++ +
Sbjct: 126 IG--MGYRTRRQSEYLLVLQKAPIKAKNTWRLHNIRDVWSEKIPN--------------- 168
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
D K+HP KP+ L ++ S T GD++LDP GS + AK+L R FIG +
Sbjct: 169 --DELKIHPHSKPKGLQKALIESCTNKGDLVLDPASGSFSVFECAKELGREFIGTNLMP 225
>gi|168698012|ref|ZP_02730289.1| DNA methyltransferase [Gemmata obscuriglobus UQM 2246]
Length = 501
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 99/312 (31%), Gaps = 75/312 (24%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + +S+++LE++ I+ DPP+ Q + + + + D
Sbjct: 5 NSLYHADSLTLLERIDGGVARTIYLDPPWFSQPSIGTRGSGSRVANGLRD---------- 54
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y L C R+L +G++ V + +L+ + D M
Sbjct: 55 YLDNFARVLQQCHRILADDGSIIVHAEPSLGQKFALLLEQIFRDNHVDDYILPQFGMNQG 114
Query: 141 RGR----RFQNAHET-LIWASPSPKAKGYTFNYD-----ALKAANEDVQMRSDWLIPICS 190
+ + T L + + N D A +A + +M L
Sbjct: 115 VRHAALLHYGKSQNTLLNDVCRPVEESEHVRNPDDDPRGAWRAVDLTTRMDRPMLQFEWR 174
Query: 191 GS---------------ERLRNKDGEKLHPTQKPEAL----------------------- 212
G ERL ++ P L
Sbjct: 175 GHQPPIGRSWRYQLSELERLADEGRIHFSAGGSPPRLKAYQSERRSVPVGTIWDDLQPLR 234
Query: 213 -----------------LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ R+++ ++ P D+++DP+ GSGTS A + R +IG +
Sbjct: 235 GGSAERVGFPSQQPVALIERVILRTSNPDDLVIDPYCGSGTSLVAAHRQDRCWIGCDSSP 294
Query: 256 DYIDIATKRIAS 267
+ I++ R+++
Sbjct: 295 EAIELTRARLST 306
>gi|300777382|ref|ZP_07087240.1| N-6 adenine-specific DNA methylase [Chryseobacterium gleum ATCC
35910]
gi|300502892|gb|EFK34032.1| N-6 adenine-specific DNA methylase [Chryseobacterium gleum ATCC
35910]
Length = 253
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/249 (19%), Positives = 77/249 (30%), Gaps = 50/249 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I + N++ ++ + P DL DPPY + + +D + WD +
Sbjct: 3 TITRENNMELMARYPDNYFDLAIVDPPYGILNKTKRGGDYKFNMDEYS-QWD----VKPN 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + L + + G + L + + I+W K+ P
Sbjct: 58 DDYFNELLRVSKNQIIWGGNYFGQ------------LWLKSEYNKGFIIWDKNQPETLNN 105
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ A +L S + K+
Sbjct: 106 FSMAEMAWSSLDKPSKIFRFSV---------------------------------RKNRN 132
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKP L +L GD ILD GSGT S E+ + Y A
Sbjct: 133 KIHPTQKPVELYEWLLKMYANQGDKILDTHLGSGTIAIACYNAGLSLTACEISETYYLKA 192
Query: 262 TKRIASVQP 270
+I V P
Sbjct: 193 LDKIKEVIP 201
>gi|317178225|dbj|BAJ56014.1| Type III DNA modification enzyme [Helicobacter pylori F16]
Length = 678
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 66/175 (37%), Gaps = 23/175 (13%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDSFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEVLKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ ++ + + + FQN +E ++ + +A
Sbjct: 194 DNECAQLKLLCDEIFDERNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKHVEAF 248
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+G++ L + +K+ KP L+SR++ ST DIILD F GSGT+ +
Sbjct: 413 NGTKELNDLFNQKVFNNPKPTKLISRLIELSTNESDIILDFFAGSGTTAHAVLESN 468
>gi|327188763|gb|EGE55959.1| Site-specific DNA-methyltransferase (adenine-specific) [Rhizobium
etli CNPAF512]
Length = 670
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 24/176 (13%)
Query: 1 MSQKNSLAINENQNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ Q + +N ++ ++ ++ I+G+++ VL+ L + LI+ DPPYN
Sbjct: 77 IQQGSYATLNPSRADSVDFDLTENVFIEGDNLEVLKLLQKAYFGKIKLIYVDPPYNTGNE 136
Query: 55 GQLYRPDHSLVDAV-------TDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPN 99
+D DS KFS+ + L + +L+ +
Sbjct: 137 FIYPDKFSETLDTYLAYTGQIDDSGKKFSTNADTSGRYHSRWLNMMYPRLYLAKNLLRED 196
Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
G L++ H + + ++ + + + + N +GR + T
Sbjct: 197 GALFISIDDHEVMNLRSICDQIFG---EENHIATISVLNNLKGRNDKKNVATCHEY 249
Score = 43.5 bits (101), Expect = 0.056, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
K + RI+ +TK D+ILD F G T+ + R F+ +++
Sbjct: 428 PKSPKFMKRIIQMATKSDDLILDFFAGFSTTAHATMELNYEEGTNRRFVMVQL 480
>gi|316997286|dbj|BAJ52739.1| adenine specific DNA methyltransferase [Campylobacter lari]
Length = 613
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 27/224 (12%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-------- 61
K+ IIKG+++ L+ L + + +I+ DPPYN + + +Y D
Sbjct: 86 SKDTQNTKNIIIKGDNLHALKLLKQSYYEKIKMIYIDPPYNTKNDKFIYNDDFVKEHRKL 145
Query: 62 --HSLVDAVTDSWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVI 105
+ + + D ++ S A+ +F L R +L+ +G +++
Sbjct: 146 LLQTGLLEIDDEGNEIRSETLNFFINQKGDRIHSAWLSFMLPRLKLARDLLREDGVIFIS 205
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ + + + + +N HE ++ S
Sbjct: 206 IDDNEQANLKILCDEIFGEENFVADFIWNNKYTTSNDTDVSYQHEHILCYSKKRTNFNLK 265
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
K +D R+ + L+ P
Sbjct: 266 LLPRNEKQNLTYKNRDNDPKGAWKPTPIHARSGSLKNLYKVIFP 309
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK--PGDIILDPFFGS 234
+ + +E L + G+ + K ++ RI+ ST DIILD F GS
Sbjct: 362 GTMWHYNDVGHTHGNNEELASILGKGVFGDPKGVLMIKRIIQLSTNTNQNDIILDFFAGS 421
Query: 235 GTSGAVAK------KLRRSFIGIEMK 254
GT+ R FI +++
Sbjct: 422 GTTAQAVMELNAQDNGNRKFILVQLD 447
>gi|188493586|ref|ZP_03000856.1| DNA methylase [Escherichia coli 53638]
gi|188488785|gb|EDU63888.1| DNA methylase [Escherichia coli 53638]
Length = 350
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLTQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWMHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R +G+E++ + + K I
Sbjct: 325 RRALGVELESERFNQTVKEINE 346
>gi|300742633|ref|ZP_07072654.1| adenine specific DNA methylase Mod [Rothia dentocariosa M567]
gi|300381818|gb|EFJ78380.1| adenine specific DNA methylase Mod [Rothia dentocariosa M567]
Length = 653
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 18/202 (8%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ ++ S + ++ II G+++ L+ L VD ++ DPPYN G +
Sbjct: 24 LDRQYSYDEHGQHQEDNGSQNMIIHGDNLEALKALLPRYEGKVDCVYIDPPYNTGNEGWV 83
Query: 58 YRPDHSLVDAVTDSW------DKFSSFEAYDAF---TRAWLLACRRVLKPNGTLWVIGSY 108
Y + ++ D W + +D + L +R+L P G ++V
Sbjct: 84 Y--NDAVNDPRIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLRLLQRLLAPTGAIFVSIDD 141
Query: 109 HNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + M + + + E L S P
Sbjct: 142 NEAAHLKAMCDEIFGARCFVADISWQRTYSTRNDSKGIPAEVEHLFVFSKQPGWNPNKLE 201
Query: 168 YDALKAANEDVQMRSDWLIPIC 189
A +D D
Sbjct: 202 RTAEM---DDKYSNPDGDRTAW 220
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 13/120 (10%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LR 245
E DG T KP L+ RIL +T ++LD F GSGT+
Sbjct: 369 KEIRAIFDGRVAFDTPKPTRLIERILAVATDENSLVLDSFAGSGTTAHALLNLNKADGGN 428
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
R FI +E+ + +R+ +T R E V F+ + ++ G L
Sbjct: 429 RRFILVELGDYAGSVTAERVRRT-------ITGYKDVREEQVVLFDHKLTLATLKKGADL 481
>gi|148828222|ref|YP_001292975.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
PittGG]
gi|115289027|gb|ABI85520.1| M.Hin1056ModP-8 [Haemophilus influenzae]
gi|148719464|gb|ABR00592.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
PittGG]
Length = 724
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 26/202 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + ++ ++ IIKGN++ L L V LI+ DPPYN +G Y
Sbjct: 186 KQAVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN- 244
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF + + F + L +++L +G ++V + + ++
Sbjct: 245 ------------DKF-NHSTWLTFMKNRLEIAKKLLADDGVIFVQCDDNEQAYLKILMDE 291
Query: 121 LNFW--ILNDIVWRKSNPMPN-----FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+ +N I+ SN N +G++F E ++ + T A +
Sbjct: 292 IFERENFINTIIPEMSNASGNKIKHAIKGKKFPKLKEYILLYAKDKNQINLTIPKQAKEK 351
Query: 174 ANEDVQMRSDWLIPICSGSERL 195
D + ER+
Sbjct: 352 W--DKEYNQIIPELTLQSFERI 371
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
A N + + W +G + + G +KPE LL IL +TK GDIILD
Sbjct: 495 AFAEINSSIYIGDIWFKITTTGG--VAQEGGVNFTNGKKPEQLLKIILDCATKKGDIILD 552
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 553 FHLGSGTTAAVAHKMNRQYIGIEQMDYIKTLAVERLKK 590
>gi|37518398|emb|CAD58550.1| hypothetical protein [Yersinia enterocolitica]
Length = 647
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 29/208 (13%)
Query: 20 KDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK--- 74
+++I G ++S + L +DL+ DPPYN + + D WDK
Sbjct: 68 ENEIWDGENLSAMVTLYKYRGQIDLVLTDPPYNTGEDFR-----------YNDKWDKDPN 116
Query: 75 ------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
S + F + R +LKP G + + + +FR+G ++
Sbjct: 117 DPDLGDVVPKDDGSKHSKWLRFMTPRIWMMREMLKPGGVMAICIDHRELFRLGMLMDEIF 176
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
I+ + + + A E ++
Sbjct: 177 GEDNRLAIINWQKSAAARPDNKHVSTATEYVLVYGKDITRVRTASLARGEADNKRYSNPD 236
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D G+ ++ + + Q P
Sbjct: 237 NDPGNDWREGNLTAKSYSAKDDYGIQSP 264
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 54/183 (29%), Gaps = 24/183 (13%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
G L Y + D D+ + S S
Sbjct: 334 NNWPFLWFGRDGLGRPRVKTYLEQIKKGKVPVTYWSDTDLASEILTDIDLGSTSWDYSES 393
Query: 191 G------SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK- 243
G +E T KP L+++I+ +P I+LDPF GSGT+G +
Sbjct: 394 GRSADGVAELTAVVGQGHGFSTVKPLKLMTKIIQLWCRPDGIVLDPFAGSGTTGHAVLEL 453
Query: 244 -----LRRSFIGIEM------KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
R FI IE + +R+ V + + EP V
Sbjct: 454 NKEADTNRRFILIEQGNTEKGDHYAKTLTAERVKRVISGD------WSKTKKEPLVGGFR 507
Query: 293 LVE 295
+E
Sbjct: 508 FIE 510
>gi|325972192|ref|YP_004248383.1| DNA methylase N-4/N-6 domain protein [Spirochaeta sp. Buddy]
gi|324027430|gb|ADY14189.1| DNA methylase N-4/N-6 domain protein [Spirochaeta sp. Buddy]
Length = 932
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 24/186 (12%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 130 WSNRMILGDSLYVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSREVRDGNIQH 189
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y F R L R +L +G++++ N+ RI +
Sbjct: 190 ITRESEQVKAFRDTWRYG--VHSYLTFLRERLTISRELLSDSGSIFIQIGEENVHRIRVL 247
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + + F + ++W S + + + Y K A++D
Sbjct: 248 MDEIFGENNYQSTIYFATTG-GFATSGLSRIGDYILWYSKNAENTKHRQLYTKKKGADDD 306
Query: 178 VQMRSD 183
+
Sbjct: 307 RSAYKN 312
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 12/198 (6%)
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
IFRI + + ++ P+ N + L + +
Sbjct: 339 KIFRIDNLCGQGSPKEPTPFNFQGRTYKPSNDSHWKPNFPDGLERLKKADRINATPKALS 398
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
++ N+ + +KL+ Q ++ R ++ +T PGD++LD
Sbjct: 399 YIRYFND----YPVSPLRDIWDDTGHSGFSYDKLYVVQTGTNVIQRCILMTTDPGDLVLD 454
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL--------GNIELTVLTG 281
P GSGT+ VA++ R +I I+ + + +A RI +
Sbjct: 455 PTCGSGTTAYVAEQWGRRWITIDTSRVALALARGRIMGARYPYYLLLDSTDGQAKEAELS 514
Query: 282 KRTEPRVAFNLLVERGLI 299
KR N + +G +
Sbjct: 515 KRYLSIKHTNGDIRQGFV 532
>gi|167834884|ref|ZP_02461767.1| type III DNA modification methyltransferase [Burkholderia
thailandensis MSMB43]
Length = 671
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 24/162 (14%)
Query: 18 EW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---------------- 55
+W ++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 94 DWASTRNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLEL 153
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
V + TD+ +F + + L R +L +G + V H +
Sbjct: 154 TGQTTGGKRVSSHTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALV 211
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+++ + V P R HE+++ +
Sbjct: 212 LVMREIFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 253
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V + P+P R
Sbjct: 309 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGEPCPVPERGWRNPPA 364
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ LI T + +E+ + + GS+ K
Sbjct: 365 TMQALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 423
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP L + I+ T D+I+D F GSGT+ R ++ +++
Sbjct: 424 KPVELAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGNRRYVLVQL 475
>gi|308270524|emb|CBX27136.1| hypothetical protein N47_A11650 [uncultured Desulfobacterium sp.]
Length = 388
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 161 AKGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
+K +A ++ED Q+ D + + +LR + +HPT KP AL++ ++
Sbjct: 271 SKPSKKEKEAGLESHEDKQICGRDIGQDMRNNPYKLRPALRKNIHPTVKPLALMTYLIKM 330
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
++ GD++LDPF GSGT+ A R IGIE +++Y IA +R
Sbjct: 331 GSRKGDVVLDPFMGSGTTCIAALLTNRRSIGIEKEEEYFSIAKERCK 377
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 109/360 (30%), Gaps = 88/360 (24%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ + G+ + VL+++ SVD++ DPPY ++ G+ +WDK
Sbjct: 12 LNTLSLGDCLEVLKQMSDNSVDVMITDPPYGIKFMGK--------------NWDKAIP-- 55
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN--IFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ C+RVLKP +++ + + R+ L+ ++
Sbjct: 56 -----SVEIWKECQRVLKPGAFAFIMCAPRQDLLCRMTDNLEKAGLKTGFTPIYWTYASG 110
Query: 138 -----------------------------PNFRGRRFQNAHETLIWASPSPKAKGYTF-- 166
++ G + + A E ++ K YT
Sbjct: 111 FPKAHNIGKAIFKKAGAQQEVVETSKRLNGSYGGFQPKPAVEVILVVMKPLDQKCYTKQA 170
Query: 167 --NYDALKAANEDVQMRSDWLIPICSGS-----------ERLRNKDGEKLHPT-QKPEAL 212
N + N+ + +G+ R ++ K T + P L
Sbjct: 171 LLNGKGITWLNDCRVPYNCEKDKPSAGNRTCNFGEQEPKYRSKSNPEWKADETGRFPANL 230
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
L D ILD G+S + +F ++ Q D +A +P
Sbjct: 231 L---------VSDNILD-----GSSQYYSLDKWSNFHLEDLPQSVQDTFPF-LAVSKPSK 275
Query: 273 NIELTVLTGKRTEPRV--AFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGS 330
+ L + + + L + NI TV + ++GS
Sbjct: 276 KEKEAGLESHEDKQICGRDIGQDMRNNPYKLRPAL---RKNIHPTVKPLALMTYLIKMGS 332
>gi|288957068|ref|YP_003447409.1| DNA methylase N-4/N-6 [Azospirillum sp. B510]
gi|288909376|dbj|BAI70865.1| DNA methylase N-4/N-6 [Azospirillum sp. B510]
Length = 911
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 24/175 (13%)
Query: 17 FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL------- 64
W ++++ G+S++V+ L V I+ DPPY ++ N S
Sbjct: 131 SNWTNRMVLGDSLAVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNR 190
Query: 65 ---------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
V A D+W +Y + R L R +L +G+++V NI R+
Sbjct: 191 DHITRESEQVRAFRDTWR--DGIHSYLTYLRDRLTVARDLLTDSGSIFVQIGDANIHRVR 248
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+L + F N I + + ++W + + Y + +
Sbjct: 249 ALLDEI-FGEENFISEITFQKTGGQTSEFLSSVQDYVLWYGKNKEITKYRQPFQS 302
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K++ Q A+ R ++ +T PGD++LDP GSGT+ VA++ R +I I+ + + +A
Sbjct: 405 KVYVVQTSPAVAQRCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALA 464
Query: 262 TKRIASVQPL-------GNIELTVLTGKRTEPRVA 289
RI + ++ RT P+ A
Sbjct: 465 RARIMGARYPYYLLADSREGQIREGEITRTPPKDA 499
>gi|261414483|ref|YP_003248166.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261370939|gb|ACX73684.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302327525|gb|ADL26726.1| putative type II DNA modification methyltransferase [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 292
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/278 (16%), Positives = 90/278 (32%), Gaps = 37/278 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL----------------------QLNGQLYR 59
K+ + +E ++ I DPPY + Q R
Sbjct: 4 KVFNEDCFDWMENQSENTITAIVTDPPYGVKEYTEKELVKKRAGSGGIWRIPQKFDGCTR 63
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ D ++ + Y F W +++L P G +++ + +G+ L+
Sbjct: 64 QPVPRFSVINDDPEERKNV--YL-FFERWARLAKKILVPGGHIFLASTPLLSDIVGSALR 120
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNA-----------HETLIWASPSPKAKGYTFNY 168
+ +I+ R + ++ E K N
Sbjct: 121 SAGLEKRGEIIRSVCTLRGGDRPKNAEDEFPELSVIPKALWEPWCLYRKPLAEKTVAENL 180
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG-DII 227
KA + + + HP+ KP++ L +I+ ++ G I+
Sbjct: 181 RVWKAGALRRPAIDRPFSDFIQSEKTPKIERDIVNHPSIKPQSFLRQIVRAALPLGEGIV 240
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
LDPF GSG++ A A L IG+E ++ + I
Sbjct: 241 LDPFSGSGSTLAAADYLGYDSIGVEKDTEFFRQSLHAI 278
>gi|322433745|ref|YP_004215957.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
gi|321161472|gb|ADW67177.1| DNA methylase N-4/N-6 domain protein [Acidobacterium sp. MP5ACTX9]
Length = 935
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 26/217 (11%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 143 WSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNVGH 202
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y ++ R L+A R +L +G+++V N R+ +
Sbjct: 203 ITREPEQVKAFRDTWR--DGIHSYLSYLRDRLVAARDMLTDSGSIFVQIGDENSHRVRAL 260
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
L + S + + + L+W + + Y + E
Sbjct: 261 LDEVFGPDNAVSEIAFSKTT-GLGAKFLSSRFDFLLWYAKDKDQAKFRRPYLSKSH--EA 317
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
+ + I +G R ++ + L
Sbjct: 318 GTADTYFWIRNEAGQYRALTRNEKDAMMIPAGYELYK 354
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+KL+ Q + R ++ +T PGD++LDP GSG++ VA++ R +I ++ + + +
Sbjct: 431 DKLYVVQTGTKTIQRCILMTTDPGDLVLDPTCGSGSTAYVAEQWGRRWITVDTSRVALAL 490
Query: 261 ATKRI 265
A R+
Sbjct: 491 ARARV 495
>gi|330892364|gb|EGH25025.1| site-specific DNA-methyltransferase (adenine-specific) [Pseudomonas
syringae pv. mori str. 301020]
Length = 264
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 19/160 (11%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
K+ I+G+++ VL+ L V +IF DPPYN +D +
Sbjct: 98 KNLFIEGDNLEVLKLLQKSYAGKVKMIFIDPPYNTGNEFIYPDNFQDNLDTYLQYTGQKD 157
Query: 77 S---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN- 120
S + L + +L+ +G +++ R+ +
Sbjct: 158 SDGLKVSSNTEGSGRFHTNWLNMMYPRLKLSKSLLQNDGAIFISIDDSEAPRLRMLCDEV 217
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + + P F H ++ S
Sbjct: 218 FGEENFITNIIWQHSVQPKGYSGIFSVHHNHILMYRKSED 257
>gi|320162134|ref|YP_004175359.1| hypothetical protein ANT_27330 [Anaerolinea thermophila UNI-1]
gi|319995988|dbj|BAJ64759.1| hypothetical protein ANT_27330 [Anaerolinea thermophila UNI-1]
Length = 263
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 15/148 (10%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
+Q N+ + NQ E ++I G+S+ VL+K+P S+DLIF PPYN L + R D
Sbjct: 130 AQDNNFSKISNQ-LPPEMTNQIFCGDSLEVLKKIPDNSIDLIFTSPPYNFGLEYE--RQD 186
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ WD Y A C RVLK G + V I +
Sbjct: 187 DAH------KWD------LYFEKLFAIFDECIRVLKFGGRIAVNIQPLFSDYIPSHHLIS 234
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAH 149
NF+I ++W+ H
Sbjct: 235 NFFISRRMIWKGEILWEKNNYNLLCCNH 262
>gi|296184979|ref|ZP_06853390.1| DNA (cytosine-5-)-methyltransferase [Clostridium carboxidivorans
P7]
gi|296050761|gb|EFG90184.1| DNA (cytosine-5-)-methyltransferase [Clostridium carboxidivorans
P7]
Length = 650
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 22/247 (8%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
S+ E + ++ I+G+++ VL+ L + +I+ DPPYN +
Sbjct: 92 SRGTLRPFREESKNWDTTENLYIEGDNLEVLKLLQKSYQNKIKMIYIDPPYNTGNDFVYK 151
Query: 59 RPDHSLVDAV-------TDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLW 103
+ D +K S+ + L R +LK +G ++
Sbjct: 152 DDYKDNLQNYFEVTGQVDDDGNKTSTNSESSGRYHTNWLNMMYPRLRLARNLLKDDGVIF 211
Query: 104 VIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-- 160
+ + + + + + R + ++ + ++ +
Sbjct: 212 ISIDDNEFGNLKKVCDDIFGEDNFLGNIVRATGQTTGQDSGGLGSSFDYVLAYTKISGVD 271
Query: 161 -AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
+ +D + NED + + + +GS R + + P+ + +
Sbjct: 272 LSGLPLTEHDLKRFDNEDERGKYAYDQMRKTGSNDRREDRPNMYYSIKDPDGNDIYPIAA 331
Query: 220 STKPGDI 226
+
Sbjct: 332 AGYESCW 338
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 29/236 (12%), Positives = 61/236 (25%), Gaps = 24/236 (10%)
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
++ G+ N++ ++ I + +
Sbjct: 286 DNEDERGKYAYDQMRKTGSNDRREDRPNMYY--SIKDPDGNDIYPIAAAGYESCWRFEKK 343
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN----K 198
+ + I + + + + S + + R+
Sbjct: 344 TYDKLKKDGFILWKKTKRGDVEIWWPYVKYYLEGRTKRPSPLWNDLDGNKKATRDVRLLF 403
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLR------RSFIG 250
DG K+ KP + R++ S DIILD F GS ++ + R FI
Sbjct: 404 DGIKVFDYSKPIDFIQRLICISPNANNEDIILDFFSGSASTANAVMSINADDLGKRRFIM 463
Query: 251 IEM------KQDYIDIATKRI----ASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
I++ + K I ++ K + V +
Sbjct: 464 IQLPEQTDENSEACKAGYKNICEIGKERIRRAGEKIVQNKDKEGIENLDIGFKVFK 519
>gi|108563818|ref|YP_628134.1| type III R-M system modification enzyme [Helicobacter pylori HPAG1]
gi|107837591|gb|ABF85460.1| type III R-M system modification enzyme [Helicobacter pylori HPAG1]
Length = 654
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/190 (12%), Positives = 66/190 (34%), Gaps = 23/190 (12%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ + I + +K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNHKILKPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEETLKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + + + + + H+ ++ +
Sbjct: 194 DNECANLKILCDEIFGEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLCYQKNSINFKQIDI 253
Query: 168 YDALKAANED 177
+ + ++
Sbjct: 254 DENDYSLKDE 263
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 1/191 (0%)
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ D+SL D + + + D + + + + G
Sbjct: 252 DIDENDYSLKDEFYNERGGYKLNQNLDYNSLQYNKRMDYEIVIGNEKFYAGGLETYTERQ 311
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAA 174
W+ + + N N T + +K Y Y
Sbjct: 312 KGNFGTIDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIEYFNRTKN 371
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
++ + S + + + + KP L+S ++ +T+ GDIILD F GS
Sbjct: 372 ISSIEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLIDQTTEKGDIILDFFAGS 431
Query: 235 GTSGAVAKKLR 245
GT+ +
Sbjct: 432 GTTAHAVLESN 442
>gi|13488060|ref|NP_085633.1| DNA methyltransferase [Mesorhizobium loti MAFF303099]
gi|14027882|dbj|BAB54474.1| DNA methyltransferase [Mesorhizobium loti MAFF303099]
Length = 614
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 41/230 (17%)
Query: 18 EWKDKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQ--LYRPD----HSLVDAVTD 70
E K+++ G+++++L + + +SVDL++ DPP+N Q+N PD + V+A D
Sbjct: 40 EMKNQLWFGDNLTILREEIADESVDLVYLDPPFNSQVNYNVLFRTPDEDAASAQVEAFRD 99
Query: 71 SWDKF------------------------------SSFEAYDAFTRAWLLACRRVLKPNG 100
+W S AY L RRVL+P G
Sbjct: 100 TWTWGPEAKWAFDEIMHTGGGVTPIVHALHAALGDSDMMAYLVMMAQRLHELRRVLRPTG 159
Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+L++ + +L + + RR+ H+ L++ S
Sbjct: 160 SLYLHCDPTASHYLKIILDAIFGPTNFLNEVIWKRTSAHSSARRYGPIHDVLLFYSR--- 216
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR-NKDGEKLHPTQKP 209
+ + +N E + D +R G++ T KP
Sbjct: 217 GERHCWNAQYQPYDAEYLDTFFDQEDADGRRWKRTDLTGAGKRNGETGKP 266
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 186 IPICSGSERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
I + + L N+ E+LH PTQKP +LL RIL SS G+++LDPF G GT+ A A+
Sbjct: 320 QDIWTDIKPLHNRAAERLHYPTQKPVSLLDRILRSSANVGEVVLDPFCGCGTTIAAAQLA 379
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
R +IGI++ I + R+A + + +L +
Sbjct: 380 GRQWIGIDVAYHAIRVIEDRLADMPGKIDYDLGGIP 415
>gi|254251037|ref|ZP_04944355.1| Adenine specific DNA methylase Mod [Burkholderia dolosa AUO158]
gi|124893646|gb|EAY67526.1| Adenine specific DNA methylase Mod [Burkholderia dolosa AUO158]
Length = 672
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 17/160 (10%)
Query: 16 IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG-------QLYRPDHSL- 64
+ + +I+G+++ V++ L V L++ DPPYN + R S+
Sbjct: 98 WDDTRHLMIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLSIT 157
Query: 65 ------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V T++ + L +L G + V H + + ML
Sbjct: 158 GQAEGGVKRSTNTEANGRFHTDWLNMMYPRLKLVHALLSDEGLIVVHIDEHEVHALVLML 217
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + V P R HE+L+ + +
Sbjct: 218 REIFGEENELGVAVWDKRNPKGDARGIAYQHESLVLFARN 257
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA---------CRRVLKPNGTLW--VIG 106
R ++DA D+ + + + RAWL A L +G ++ V
Sbjct: 271 KRNAQRMLDAAHDAMYRSGNPKDAQKAYRAWLKAQTNLSGGEVMYDRLSADGRVYRLVSM 330
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
++ N + F L V K MP R + L+ T
Sbjct: 331 AWPN----KKKAPDEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETT 386
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ +E+ + + +GS+ K KP + ++ T+ DI
Sbjct: 387 QPQRIYYLDEN-MYENVPSVLPFAGSDDALLKALGIPFEQPKPVDFAAAVIGWCTRGDDI 445
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+LD F GSG++G ++ R +I +++
Sbjct: 446 VLDCFAGSGSTGHAVMQVNATDGGARRYILVQL 478
>gi|313125852|ref|YP_004036122.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
gi|312292217|gb|ADQ66677.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
Length = 372
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 58/320 (18%), Positives = 105/320 (32%), Gaps = 52/320 (16%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKF 75
E + +++ G++ + + +V+L+ PPY + ++ L+ D
Sbjct: 1 MESRHRVVVGDAR-TMSDIADDAVELVVTSPPYPMVEMWDDLFSELTDEAGPALRDGDGE 59
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV------------IGSYHNIFRIGTMLQNLNF 123
++FEA + RVL P G + Y N R+ L F
Sbjct: 60 AAFEAMHSALDDVWAEISRVLVPGGIACINVGDATRTVGDSFRVYPNHARVTDAFVELGF 119
Query: 124 WILNDIVWR---KSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGY----TFNYDAL 171
L D++WR S G NA HE ++ ++ + T Y++
Sbjct: 120 EPLPDVLWRKPTNSAAKFMGSGMIPPNAYVTLEHEYVLVFRNGTDSRAFDPGETRRYESA 179
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNK--------------------------DGEKLHP 205
E SD + + + + D +
Sbjct: 180 YFWEERNAWFSDVWTDVAGTGQEVAARTRAHTGSGDGEIADGGNVYDLDAESGDELRERT 239
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
P + R++ + GD +LDPFFG+GT+ A R +G E++ ++D R
Sbjct: 240 AAFPFEIPYRLVNMYSVYGDTVLDPFFGTGTTSLAAMVAGRDSVGYELEDAFVDAFDARA 299
Query: 266 ASVQPLGNIELTVLTGKRTE 285
L + E
Sbjct: 300 TGAPTLSREVVEARLDDHRE 319
>gi|329767390|ref|ZP_08258915.1| DNA methylase [Gemella haemolysans M341]
gi|328836079|gb|EGF85770.1| DNA methylase [Gemella haemolysans M341]
Length = 157
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ V S + + + F+ +WRK+NPMP F N++E I+
Sbjct: 1 MIVFMSILRVETLVEIANEFGFYYKTTGIWRKTNPMPRNMNLHFVNSNECWIYF------ 54
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
T+ N+ + + + E+ K HPTQKP L + +
Sbjct: 55 ---TYKTKTGTFNNKGKLVLDYIETSVTTAREKKLGK-----HPTQKPIILFEHFIRLLS 106
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GD+++DPF GSG+S + +L R+FI +E+++ Y +A R+ +
Sbjct: 107 NEGDLVVDPFLGSGSSAIASYRLNRNFIDVELEEKYAKLANMRVEDEK 154
>gi|323977145|gb|EGB72232.1| DNA methylase [Escherichia coli TW10509]
Length = 349
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
+I + + ++ LP SVDLI DPPY +SWD ++ + Y
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPY---------------FKVKPESWDNQWEGDDDY 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 57 LKWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGC 115
Query: 142 GRRFQNAHE 150
+ A+
Sbjct: 116 NKESLRAYF 124
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
H L N + ++ + + RG + H+ + S + YT
Sbjct: 192 HWFGTSQWQLPNEGDYNKLQALFARVAAEKHQRGELEKPHHQLVSTYSELN--RQYTELL 249
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
K + + + +++ G+ HP +KP +L +I+ +S++PGD++
Sbjct: 250 SEYKNLRRYFGVTAQVPYTDVWTHKPVQHYPGK--HPCEKPAEMLQQIISASSRPGDLVA 307
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
D F GSG++ A L R IG+E++ +
Sbjct: 308 DFFMGSGSTVKAAMALGRRAIGVELETGRFEQT 340
>gi|161525446|ref|YP_001580458.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|160342875|gb|ABX15961.1| DNA methylase N-4/N-6 domain protein [Burkholderia multivorans ATCC
17616]
Length = 403
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 42/277 (15%), Positives = 77/277 (27%), Gaps = 50/277 (18%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
L + L+F PPY Q +D + R
Sbjct: 125 LDGERAHLLFTSPPYANQREYTTG------------------GVADWDVLMQGVFGTARA 166
Query: 95 VLKPNGTLWVIGS-------YHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
L+ + V + + ++ + VW +S +P R
Sbjct: 167 ALRDEAQVLVNLGLVHRDNEWQPYWDGWIEWMRTQGWRRFGWYVWDQSVTVPGDWAGRLA 226
Query: 147 NAHETLIWASPSPKAKGYTFNYD--------------ALKAANEDVQMRSDW-------- 184
HE + + + + +
Sbjct: 227 PRHEFVFHFNRQARKPNKIVPCKWAGHETHLRADGSSTAMRGKDGKVGEWNHAGTPTQEF 286
Query: 185 -LIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ R R + G+ + HP P L + + + +I+ +PF GSGT+ +
Sbjct: 287 RIPDSVVEVTRQRGRIGDGIDHPAVFPLGLPKFFIEAYSDEAEIVFEPFSGSGTTLLAGQ 346
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
R IE+ +Y+D+A +R P L V
Sbjct: 347 LTGRKVRAIELAPEYVDVALRRWLQHHPGTAPVLAVT 383
>gi|224535546|ref|ZP_03676085.1| hypothetical protein BACCELL_00410 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522836|gb|EEF91941.1| hypothetical protein BACCELL_00410 [Bacteroides cellulosilyticus
DSM 14838]
Length = 251
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 28/235 (11%)
Query: 39 SVDLIFADPPYNLQLN----GQLYRPDHSLVDAVTDSWDK--FSSFEAYD--AFTRAWLL 90
LI AD PYNL N + D + +D K F + + + F
Sbjct: 21 KAQLIIADVPYNLGNNAYASNPSWYVDGDNKNGESDKAGKEFFDTDKDFRPAEFMHFCSQ 80
Query: 91 ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ K G + + + + FR + + ++V+RK +
Sbjct: 81 MLMKEPKEKGKAPCMIIFCEFEDQFRYIDLGKRYGLNNYINLVFRKDFSAQVLKANM--- 137
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ + + K N+ + + + +R+ + K+HPTQ
Sbjct: 138 ------KVVGNCEYGILLYRDKLPKFNNDGRMIFNCFDW--------VRDGETPKIHPTQ 183
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
KP LL R++ T GD+++DP GSG++ A +L R G E+K+D+ A
Sbjct: 184 KPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRKGYGFEIKKDFFREAN 238
>gi|300933398|ref|ZP_07148654.1| Site-specific DNA-methyltransferase (adenine-specific)
[Corynebacterium resistens DSM 45100]
Length = 659
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------NGQL 57
+ EN + ++ I+G+++ VL+ L + +I+ DPPYN +
Sbjct: 79 MPDKENSVNWDTTQNVFIEGDNLEVLKILQKHYYGQIKMIYIDPPYNTGNDFVYADDYAD 138
Query: 58 YRPDHSLVDAVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
++ + TD K S+ + + L R +LK +G +++ +
Sbjct: 139 SIGNYLELTGQTDEGGKLSTNSESSGRFHSNWLSMMYPRLKLARNLLKNDGVIFISIDDN 198
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
+ T+ + + + N +GR+
Sbjct: 199 EQTALRTLCDQVFGESNYVNTFAW---VSNPKGRQIS 232
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 201 EKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAV 240
+ KP L+ +L +S K GD +LD F GS ++
Sbjct: 413 KTYFDHPKPVKLIQVLLEASGVKSGDTVLDFFAGSASTAHA 453
>gi|325266200|ref|ZP_08132884.1| type III restriction/modification system modification methylase
[Kingella denitrificans ATCC 33394]
gi|324982430|gb|EGC18058.1| type III restriction/modification system modification methylase
[Kingella denitrificans ATCC 33394]
Length = 559
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 26/199 (13%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPYN +G Y DKF
Sbjct: 92 ENLIIKGNNLIALHSLATQFKGKVKLIYIDPPYNTGNDGFKYN-------------DKF- 137
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV---WRK 133
+ + F + L + +L +G ++V + + ++ + + + RK
Sbjct: 138 NHSTWLTFMKNRLEIAKTLLADDGVIFVSIDENEHAYLKILMDEIF--NRENFIGELIRK 195
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSP-KAKGYTFNYDALKAANEDVQMRSDWLIPI---C 189
+ N F HE L+ + D N D DW
Sbjct: 196 TKSTTNDVKTGFNIQHEYLLIFAEDKSNIFLLGEEKDFSNYKNPDNDPNGDWTTSDPTAT 255
Query: 190 SGSERLRNKDGEKLHPTQK 208
+++N K T K
Sbjct: 256 DDGRKIKNVMEIKNPYTGK 274
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 5/219 (2%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+N+Q L + + FS+++ D +G
Sbjct: 207 FNIQHEYLLIFAEDKSNIFLLGEEKDFSNYKNPDNDPNGDWTTSDPTATDDGRKIKNVME 266
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
G + + + F+ H+ K Y
Sbjct: 267 IKNPYTGKI-DIPGNGRRWRFNEQGFYKLLEEGRLCFKKEHKPNE---RGFFLKRYKNEL 322
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ + + + + E ++ D +K+ KPE+L I+ S T GDI+L
Sbjct: 323 KSDFLFLNSLDTVDNKFLNQVATKELIKLFD-DKVFDFPKPESLFQIIIQSCTNQGDIVL 381
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
D GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 382 DYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 420
>gi|261840194|gb|ACX99959.1| adenine specific DNA methylase [Helicobacter pylori 52]
Length = 482
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 23/174 (13%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + +K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGSRCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + + + + FQN +E ++ + +A
Sbjct: 194 DNECANLKILCDEIFGEGNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKHVEA 247
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+G++ + + +K+ KP L+SR++ ST DIILD F GSGT+ +
Sbjct: 413 NGTKEVNDLFNQKVFNNPKPTKLISRLIELSTNENDIILDFFAGSGTTAHAVLESN 468
>gi|53713761|ref|YP_099753.1| putative methylase [Bacteroides fragilis YCH46]
gi|253566235|ref|ZP_04843689.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|52216626|dbj|BAD49219.1| putative methylase [Bacteroides fragilis YCH46]
gi|251945339|gb|EES85777.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301164556|emb|CBW24115.1| putative DNA methylase [Bacteroides fragilis 638R]
Length = 251
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 34/241 (14%)
Query: 39 SVDLIFADPPYNLQLN----GQLYRPDHSLVDAVTD-------SWDKFSSFEAYDAFTRA 87
LI AD PYNL N + D + +D DK + F
Sbjct: 21 KAQLIIADVPYNLGNNAYASNPSWYVDGDNKNGESDLAGKEFFDTDKDFRPAEFMHFCSQ 80
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + + + + FR + + ++V+RK +
Sbjct: 81 MLMKEPKEKGKAPCMIIFCEFEDQFRYIELGKRYGLNNYINLVFRKDFSAQVLKANM--- 137
Query: 148 AHETLIWASPSPKAKGYT---FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
Y + K N+ + + + +R+ + K+H
Sbjct: 138 ---------KIVGNCEYGLLLYRDKLPKFNNDGRMIFNCFDW--------VRDGETPKVH 180
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PTQKP LL R++ T GD+++DP GSG++ A +L R G E+K+ + A K
Sbjct: 181 PTQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRKAYGFEIKKQFFADANKL 240
Query: 265 I 265
I
Sbjct: 241 I 241
>gi|188585004|ref|YP_001916549.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349691|gb|ACB83961.1| DNA methylase N-4/N-6 domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 637
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 18/168 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + E ++ I+G+++ VL+ L S+ +I+ DPPYN + ++
Sbjct: 79 EESKNWDETENLFIEGDNLEVLKLLQKTYHSSIKMIYIDPPYNTGGDFVYEDDFQDNLNN 138
Query: 68 V-------TDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ K S+ + L R +L G +++ +
Sbjct: 139 YLKITGQINEEGKKNSTNTENGGRFHTKWLNMMYPRLKLARNLLNDQGVIFISIDDNESG 198
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + + R F +HE + + +
Sbjct: 199 NLWKVCNEIFGETNFVAEITVIVKTEGRRYGFFAKSHEKIYVYAKNID 246
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 18/162 (11%)
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
NG + V Y + + + + N + +
Sbjct: 303 ENGFMEVSVDYQEGWEEVYPMITNGLKSVWRWGKESARQQENKNLVARRGRDGIIRIYQK 362
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
Y + K +D ++ S G++ ++ G + KP LLS I+
Sbjct: 363 ------YRKLTEIPKTVWKDKEIISIK------GTKEVQELLGSGIFDFPKPVKLLSDII 410
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+T IILD F G+ T+ K R +I +++
Sbjct: 411 TIATDQDSIILDFFSGAATTAHATIKKNAEDGGTRKYIMVQL 452
>gi|94311602|ref|YP_584812.1| DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
gi|93355454|gb|ABF09543.1| putative DNA methylase N-4/N-6 [Cupriavidus metallidurans CH34]
Length = 388
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
++ + +P SVDLI PPY + + + S+ AY A
Sbjct: 22 YHSDARHI--PVPDASVDLIVTSPPYWKKRDY-----------GFDGQIGQESTPAAYVA 68
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTMLQNLNFWILNDIVWRKSN 135
+ RRVLKP+G++++ + R+ + + + N I+W K +
Sbjct: 69 NMIECMREWRRVLKPSGSIFLNVGDSYMARTLAGVPGRLEAAAIDDGWLVRNRIIWAKES 128
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
MP R N HE +I + Y ++ AN + D L
Sbjct: 129 GMPEPAKNRLANRHEYIIHFV---SSAKYFYDLAGYAEANGNGANPGDVWNIP------L 179
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTK 222
R G+ H P ++ R ++ +
Sbjct: 180 RRNMGD--HLAPFPNEIVRRAILLACP 204
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
++LDPF G+GT+ + A ++ RS IG+++
Sbjct: 315 KPGVVLDPFMGTGTTLSTALEMGRSAIGVDL 345
>gi|56419951|ref|YP_147269.1| type III restriction-modification system, methyltransferase
[Geobacillus kaustophilus HTA426]
gi|56379793|dbj|BAD75701.1| type III restriction-modification system, methyltransferase
[Geobacillus kaustophilus HTA426]
Length = 478
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 27/205 (13%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS- 76
+ I+G+++ L+ L A ++ +I+ DPPYN V D+W K
Sbjct: 87 NWYIEGDNLEALKLLRTSHAGTIQMIYIDPPYNTG-----------KVLTYKDNWRKGKA 135
Query: 77 -----------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFW 124
+ + L R +L G +++ + M
Sbjct: 136 VVPSGIQEEARAHAGWLNMMYPRLWVARELLAETGAIFISIDDTEQANLRKMCDEIFGER 195
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ P + H+ ++ + + + +A +D
Sbjct: 196 NFVATFIWQRAFSPVNMNKFASRNHDFILCYAKNIDRLAWYGLPRHPEADGRYANPDNDP 255
Query: 185 LIPICSGSERLRNKDGEKLHPTQKP 209
P SG + EK++ P
Sbjct: 256 RGPWTSGDLSVGPPIPEKIYEIVTP 280
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 178 VQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + + L+ G + KP L+ R++ +T+ D+ILD F GS T
Sbjct: 336 TIWTHDEVSHSQEAKKELKELFGGLAVMDYPKPVKLIQRMVALTTRDDDLILDFFSGSAT 395
Query: 237 SGAVAKKLR------RSFIGIEM 253
+ + RSF+ +++
Sbjct: 396 TAHAVMQQNAEDGGRRSFLMVQL 418
>gi|254466011|ref|ZP_05079422.1| adenine specific DNA methylase Mod [Rhodobacterales bacterium Y4I]
gi|206686919|gb|EDZ47401.1| adenine specific DNA methylase Mod [Rhodobacterales bacterium Y4I]
Length = 508
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 17/149 (11%)
Query: 22 KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+++G+++ L+ L A V I+ DPPYN + + Y D
Sbjct: 39 LLVQGDNLDALKALLPFYAGQVKCIYIDPPYNTRSAFEKY--------------DDSLEH 84
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ L+ R L +G++WV + + ++ +
Sbjct: 85 AKWLGMIVPRLILLREFLSEDGSIWVNIDDNEGHYLKVIMDEIFGRKKFVANIAWQKRYS 144
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ HE ++ + + N
Sbjct: 145 RDSNTAIGDVHEHILIYARDFEKFKTVRN 173
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
D + + + + G T KPE L+ RIL +T PGD++LD F GSGT+
Sbjct: 273 WWPHDEVGHTGAAKQEVNAIFGADSFDTPKPERLIQRILHIATNPGDLVLDSFLGSGTTA 332
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
AVA K+ R +IG+EM R+ V + G +E R
Sbjct: 333 AVAHKMGRRWIGVEMGDHARTHCALRLKKV-------IEGEQGGISEDVQWQGGGGFR-F 384
Query: 299 IQPGQILTNAQGNISATVC 317
+ GQ + + +G I +
Sbjct: 385 CELGQAVFDEEGRIDPEIR 403
>gi|167617396|ref|ZP_02386027.1| type III DNA modification methyltransferase [Burkholderia
thailandensis Bt4]
Length = 676
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP---------------- 60
++ +I+G ++ VL+ L L++ DPPYN +
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYSDNFTDSLRHYLELTGQTT 160
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D + + TD+ +F + + L R +L +G + V H + +++
Sbjct: 161 DGKRISSHTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 218
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ LI T + +E+ + + GS+ K
Sbjct: 367 TMQALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP + I+ T D+I+D F GSGT+G R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTGHAVMALNAADGGNRRYVLVQL 477
>gi|83718634|ref|YP_440601.1| type III DNA modification methyltransferase [Burkholderia
thailandensis E264]
gi|83652459|gb|ABC36522.1| type III DNA modification methyltransferase [Burkholderia
thailandensis E264]
Length = 682
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP---------------- 60
++ +I+G ++ VL+ L L++ DPPYN +
Sbjct: 107 RNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYSDNFTDSLRHYLELTGQTT 166
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D + + TD+ +F + + L R +L +G + V H + +++
Sbjct: 167 DGKRISSHTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 224
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 225 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 261
Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 317 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 372
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ LI T + +E+ + + GS+ K
Sbjct: 373 TMQALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 431
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP + I+ T D+I+D F GSGT+G R ++ +++
Sbjct: 432 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTGHAVMALNAADGGNRRYVLVQL 483
>gi|311070558|ref|YP_003975481.1| putative DNA methylase [Bacillus atrophaeus 1942]
gi|21759276|sp|O68556|MTB1_BACSU RecName: Full=Modification methylase BglI; Short=M.BglI; AltName:
Full=BglI modification methyltransferase; AltName:
Full=N(4)- cytosine-specific methyltransferase BglI
gi|2952320|gb|AAC63974.1| BglI modification methyltransferase [Bacillus subtilis]
gi|310871075|gb|ADP34550.1| putative DNA methylase [Bacillus atrophaeus 1942]
Length = 348
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 50/309 (16%), Positives = 90/309 (29%), Gaps = 54/309 (17%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN------GQLYRPDHSLVDAVTDSWD 73
K+ +G++ +L+ + +S+ L PPY++ + + + V A+
Sbjct: 9 KNSFHEGDARELLKCIEEESIALSVWSPPYHVGKKYEEGQTYEQWSSLLTKVIALHYPIL 68
Query: 74 KFSSF-----EAYDAFTRAW------------------------LLACRRVLKPNGTLWV 104
K F + AF L + K
Sbjct: 69 KPGGFLVINIDDILAFPDPRMPRFQAVNLKKHRVSVTREDILNALKLEPELTKYQLAKKF 128
Query: 105 IGSYHNIFRIGTMLQNLNFWI----------------LNDIVWRKSNPMPNFRGRRFQNA 148
S I R + + + +QN+
Sbjct: 129 NCSEQTIERRLKGNNIRGGKYNVQTKVKLAGPVLEKAAEEAGLYLYDRRIWAKDPAWQNS 188
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC--SGSERLRNKDGEKLHPT 206
+ + + + D S G + + H
Sbjct: 189 QWHSNSY-KAVSEFEHLYIFWKPGETVIDRNKLSKEEWASWASRGIWYIPSVRKNDDHEA 247
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ P L R++ T+ GD +LD F GSGT+ A R+FIGIE + YI ++ K +
Sbjct: 248 KFPLLLPQRLIKLLTQKGDTVLDCFMGSGTTAVAALSESRNFIGIEKEPKYIQLSNKNVE 307
Query: 267 SVQPLGNIE 275
+ N E
Sbjct: 308 TFYISRNKE 316
>gi|224418017|ref|ZP_03656023.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
98-5491]
gi|253827350|ref|ZP_04870235.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313141558|ref|ZP_07803751.1| type II dna modification enzyme [Helicobacter canadensis MIT
98-5491]
gi|253510756|gb|EES89415.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313130589|gb|EFR48206.1| type II dna modification enzyme [Helicobacter canadensis MIT
98-5491]
Length = 859
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 19/193 (9%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQ 56
+S++N + +++ E ++IK ++ L L K +DLI+ DPPYN +G
Sbjct: 361 LSEENYYKLLGAFDNLDEILSGELIKSDNFQALNSLMPKYQDKIDLIYIDPPYNTGGDGF 420
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+Y DKF + ++ L + LK +G++++ + R+
Sbjct: 421 VYT-------------DKF-NHSSWLTMMNNRLDLAKEFLKNSGSIFISIDDNEQARLKI 466
Query: 117 MLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+ + K + + F HE I + K
Sbjct: 467 LCDEMFGEENFVANIVWKRKRGRDNSAKYFSKTHEYCIVYGKDTCNLNFNLLEIDNKTKK 526
Query: 176 EDVQMRSDWLIPI 188
+ SD
Sbjct: 527 QYKNPDSDKRGEY 539
>gi|170765736|ref|ZP_02900547.1| DNA methylase [Escherichia albertii TW07627]
gi|170124882|gb|EDS93813.1| DNA methylase [Escherichia albertii TW07627]
Length = 195
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II+G+++ L+K+PA SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIQGDALCELKKMPAASVDLIFADPPYNIGKN----------FDGMVENWKE----DQF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + C RVLK G+++++ S N+ + L + + + +
Sbjct: 62 IDWLLEVIAECHRVLKKQGSMYIMNSTENMPFVD--LYCRKLFTIKSRIIWSYDSSGVQA 119
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + +E ++ K YTFN DA
Sbjct: 120 RKYYGSMYEPILMMVKDAK--NYTFNSDA 146
>gi|323186687|gb|EFZ72012.1| hypothetical protein ECRN5871_5079 [Escherichia coli RN587/1]
Length = 147
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + E Y
Sbjct: 12 LINADCLEFMRSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---AGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
+ L RVLKP G+L++ H + ++ F +LN I+W
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIW 105
>gi|257091062|ref|ZP_05585423.1| DNA modification methylase [Enterococcus faecalis CH188]
gi|256999874|gb|EEU86394.1| DNA modification methylase [Enterococcus faecalis CH188]
Length = 254
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 32/247 (12%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL G++ + + D+ + F
Sbjct: 24 KAQLVIADIPYNLGKNAYASSSAWYEGGKIENGESDKANKSFFDTDENFRISEFMHFCSK 83
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L + + + V ++ + + + F +V+ K + +
Sbjct: 84 MLKKEPKEVGKAPAMIVFCAFQQLQMVIDYGKKYGFNNHIPLVFIKKSSPQVLKANM--- 140
Query: 148 AHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A Y + L N D +M +W E + K+HP
Sbjct: 141 ---------KVVGATEYALVLYREKLPKFNNDGRMVLNWF-------EWETDNSYPKIHP 184
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKP ++ R++ T GD+++DP GSG++ A +L R+ G E+K++ + + +++
Sbjct: 185 TQKPIPVIKRLIEIFTDYGDVVIDPCAGSGSTLRAAAELNRNAYGFEIKKEMYEASQEKM 244
Query: 266 ASVQPLG 272
S P+G
Sbjct: 245 LSNIPMG 251
>gi|92116203|ref|YP_575932.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
gi|91799097|gb|ABE61472.1| DNA methylase N-4/N-6 [Nitrobacter hamburgensis X14]
Length = 660
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 18/158 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------QLYRPDHSLV 65
+ +I+G+++ VL+ L V LI+ DPPYN L
Sbjct: 97 NLVIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKEFIYPDRFQDNLDTYLKYTGQKGE 156
Query: 66 DAVT---DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D + ++ + + L R +L +G +++ + + + +
Sbjct: 157 DGLKTTSNTENDGRFHTNWLNMIYPRLKLARTMLADDGAIFISIDDNEKANLKEICDEIF 216
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + HE ++ +
Sbjct: 217 GEDNFLTAIIVQSNKRGQTYKEIAKCHEYILVYYKTEN 254
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 10/132 (7%)
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
D WR S+ G + + + + + K+ + + SD +
Sbjct: 336 DSCWRWSSKKVQTDGIDATP----ITVFAKQRRDGEWNIYEKSRKSTTKAKSIWSDTAVI 391
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--- 244
G+ + KP L+ R + T D+++D F GSGT+
Sbjct: 392 SEQGTVEAGKLGMSGVLDFPKPIELIRRCVFLGTNEDDLVMDFFAGSGTTAHAVMLQSAQ 451
Query: 245 ---RRSFIGIEM 253
R +I +++
Sbjct: 452 DGLSRRWISVQL 463
>gi|210135686|ref|YP_002302125.1| type III R-M system methyltransferase [Helicobacter pylori P12]
gi|210133654|gb|ACJ08645.1| type III R-M system methyltransferase [Helicobacter pylori P12]
Length = 680
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 23/174 (13%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNESFIYGDD 133
Query: 62 HSLVDA--------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + S + +F LL R +LK +G +++
Sbjct: 134 FSQSNEEVLKTLDYSKEKLDYIKNLFGLKSHSGWLSFMYPRLLLARDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + + + + FQN +E ++ + +A
Sbjct: 194 DNECANLKILCDEIFGEGNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKHVEA 247
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
N N + + +E +I N + A D + +
Sbjct: 349 RWTWALDTFNNNKNIISIKKNSRNEYVICKKEFLDKNQVKQNENGEFYAILDKSSPARNV 408
Query: 186 IPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
I G + + +K+ KP L+SR++ ST GDIILD F GSGT+
Sbjct: 409 IENIGGGNGTKEVNDLFNQKIFNNPKPLKLISRLIELSTNEGDIILDFFAGSGTTAHAVL 468
Query: 243 KLR 245
+
Sbjct: 469 ESN 471
>gi|154486247|ref|ZP_02027654.1| hypothetical protein BIFADO_00050 [Bifidobacterium adolescentis
L2-32]
gi|154084110|gb|EDN83155.1| hypothetical protein BIFADO_00050 [Bifidobacterium adolescentis
L2-32]
Length = 293
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 45/282 (15%), Positives = 90/282 (31%), Gaps = 41/282 (14%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+W + G+S + ++ SVDL + PP+ + T S
Sbjct: 15 KDW--TLWLGDSCERMTEMADNSVDLSVSSPPFASLY----------VYSDSTRDLGNNS 62
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIG------------------------SYHNIF 112
S E + + RV KP V +Y
Sbjct: 63 SREEFIENYGYIIRELLRVTKPGRIACVHVQQVVTTKTADGVVGLTDFRGDVIRAYVENG 122
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE-----TLIWASPSPKAKGYTFN 167
I +N + K+ + + + L+ + + N
Sbjct: 123 WIFHGEVTVNKNPQAQAIRTKAQALMFVTKNKDSSMSRPALADYLLMFRKPGENQVPIKN 182
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + + Q + + +ERL ++ ++ H + R + + G+++
Sbjct: 183 DVSNEEWIDWAQPVWWNIRETNTLNERLGRENTDERHICPLQLDFIERCIRLWSNKGELV 242
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
DPF G G++ A KL R + IE+K Y D + + ++
Sbjct: 243 FDPFGGIGSTVYEAIKLGRKGMSIELKPSYWDASVNLMRDLE 284
>gi|326333165|ref|ZP_08199413.1| DNA (cytosine-5-)-methyltransferase [Nocardioidaceae bacterium
Broad-1]
gi|325949056|gb|EGD41148.1| DNA (cytosine-5-)-methyltransferase [Nocardioidaceae bacterium
Broad-1]
Length = 413
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 9/145 (6%)
Query: 21 DKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ ++G+++ VL+ L A ++ DLI+ DPPYN + +
Sbjct: 6 NTFVEGDNLDVLQALSAAGETFDLIYIDPPYNTGSLFAYHDDRRGK------DGKRAGRH 59
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND-IVWRKSNPM 137
EA+ A R L A R V+ ++V + + ++ + + + NP
Sbjct: 60 EAWIAMMRPRLEAARTVMSERAAIYVSIDDNEAAHLKVLMDEVFDERNHLAQIVVNLNPK 119
Query: 138 PNFRGRRFQNAHETLIWASPSPKAK 162
G F +HE L+ + ++
Sbjct: 120 GRQLGNGFATSHEYLLVYAKDARSC 144
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
L + KP L+ R ++++ +LD F GSGT+G R+ +++
Sbjct: 299 LFESPKPTGLIRR-ILATMPTDARVLDFFAGSGTTGHAVALANVEDGARRTCWSVQI 354
>gi|307273972|ref|ZP_07555182.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0855]
gi|306509280|gb|EFM78340.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0855]
Length = 659
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 19/171 (11%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+ E ++ I+G+++ VL+ L V LI+ DPPYN + H +
Sbjct: 84 KSKNWDETQNLYIEGDNLEVLKILQKSYANKVKLIYLDPPYNTGHDFVYQDNFHDTIKNY 143
Query: 69 TDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + S + L R +L +G +++ S +
Sbjct: 144 LEETGQVDSDGHKYSHNSETSGRFHTDWLNMIYPRLKLGRNLLTDDGLIFISISDDEVSN 203
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ ++ L + G HE ++ + + G+
Sbjct: 204 LLNVMDELFGETNHLATLIWDKNHSAQAGSFKVY-HEYVVVYAKNVNEIGH 253
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 30/156 (19%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-----RSFIGI---EMKQ 255
+ KP ++ + T+ DII+D F GSG++ + R +I + E
Sbjct: 403 FDSPKPVGMMKTFIDWYTEDEDIIMDFFSGSGSTAESVMETTASGQLRKYILVSLPENLD 462
Query: 256 DYIDIAT----KRIASV--------QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
D + +A K + + +P E+ K ++A V PG
Sbjct: 463 DALKVAQKDAVKTLETAIDVLDKLGRPHVLTEIAEERIKLAGEKIAKGENVNEDTFDPGF 522
Query: 304 ILT----NAQGNISATVCAD-----GTLISGTELGS 330
+ + + D GT+ E GS
Sbjct: 523 KVFELEKSNLKKWNTEP-EDLVTMLGTIQDNLEPGS 557
>gi|255038969|ref|YP_003089590.1| Site-specific DNA-methyltransferase (adenine- specific)
[Dyadobacter fermentans DSM 18053]
gi|254951725|gb|ACT96425.1| Site-specific DNA-methyltransferase (adenine- specific)
[Dyadobacter fermentans DSM 18053]
Length = 641
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----QLYRPDH 62
E+ + E ++ I+G+++ VL+ L + +I+ DPPYN + R
Sbjct: 89 REHSVNFDETENLFIEGDNLDVLKLLQESYFGKIKMIYIDPPYNTGKDFVYKDNFSRDTQ 148
Query: 63 SLV--DAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ + D ++ + + L R +L NG +++ + +
Sbjct: 149 AELFEGGQKDEYNHRLIVNPETSGRYHSDWLSMMYPRLKLARNLLGDNGVIFISIDENEV 208
Query: 112 FRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ ++ K + HE + + + + ++
Sbjct: 209 KNLLSLCDEIFGEQNALGNFIWKKKAGGGDDSSQIALEHEYVAFYAKAKES 259
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 7/136 (5%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
D+ R + + + + + + + YT +++L + +
Sbjct: 316 PQPDLRNRTTIWRWSKDKIETEKSEIEFHRDKKTGEWRVYTRTWESLDGVTPRSLLVENI 375
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAV--- 240
G + L G K+ KP LL ++ ++ P DI+LD F GS +
Sbjct: 376 HGRNRDGGQELAKLIGPKIFSNPKPLRLLKHLIRVANLGPDDIVLDFFAGSASMAHAILD 435
Query: 241 ---AKKLRRSFIGIEM 253
++ R FI +++
Sbjct: 436 SNSSENSHRKFIMVQL 451
>gi|332531557|ref|ZP_08407454.1| DNA methylase N-4/N-6 domain-containing protein [Hylemonella
gracilis ATCC 19624]
gi|332038920|gb|EGI75349.1| DNA methylase N-4/N-6 domain-containing protein [Hylemonella
gracilis ATCC 19624]
Length = 990
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 28/184 (15%)
Query: 5 NSLAINENQNSI----FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNG 55
N L NE + W +++I G+S++V+ L V I+ DPPY ++ N
Sbjct: 119 NGLPSNEAKTEFYQHDAHWANRMILGDSLAVMASLAEREGLRGKVQCIYFDPPYGIKFNS 178
Query: 56 QLYRPDHSL----------------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
S V A D+W +Y + R L R +L +
Sbjct: 179 NFQWSTTSRDVKDGNAGHITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTDS 236
Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
G+++V N+ R+ ++ + F N I + +G ++ ++W
Sbjct: 237 GSIFVQIGDENVHRVRAVMDEV-FGDENCITEILVKKKGSQKGGTLDPVNDFILWYGKQK 295
Query: 160 KAKG 163
K+
Sbjct: 296 KSSN 299
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+++ Q E ++ R L+ +T PGD++LD GSGT+ VA++ R +I I+ + + +
Sbjct: 449 NQIYVVQTNERVVQRCLLLATDPGDLVLDITCGSGTTAYVAEQWGRRWITIDTSRVALAL 508
Query: 261 ATKRI 265
A RI
Sbjct: 509 ARARI 513
>gi|320174956|gb|EFW50072.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
Length = 352
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIWSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F SG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMDSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|157156016|ref|YP_001462382.1| DNA methylase [Escherichia coli E24377A]
gi|157078046|gb|ABV17754.1| DNA methylase [Escherichia coli E24377A]
Length = 349
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADCLKFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---EGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDTEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
H L N + ++ + + RG + H+ + S + YT
Sbjct: 192 HWFGTSQWQLPNEGDYNKLQALFARVAAEKHQRGELEKPHHQLVSTYSELN--RQYTELL 249
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
K + + + ++ G+ HP +KP +L +I+ +S++PGD++
Sbjct: 250 SEYKNLRRYFGVTAQVPYTDVWTHKPVQYYPGK--HPCEKPAEMLQQIINASSRPGDLVA 307
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
D F GSG++ A L R IG+E++ +
Sbjct: 308 DFFMGSGSTVKAAMALGRCAIGVELETGRFEQT 340
>gi|149914819|ref|ZP_01903349.1| DNA methylase N-4/N-6 [Roseobacter sp. AzwK-3b]
gi|149811612|gb|EDM71447.1| DNA methylase N-4/N-6 [Roseobacter sp. AzwK-3b]
Length = 975
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 26/187 (13%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNG 55
++ ++ A E W +++I G+ + V+ L V I+ DPPY ++ N
Sbjct: 107 ITDEDREAEVEFYRHSTRWSNRMILGDGLQVMASLAEREGLKGQVQAIYIDPPYGIKFNS 166
Query: 56 QLYRPDHSL----------------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
S V A D+W +Y + R L+ R +L +
Sbjct: 167 NFQWSTTSRDVKDGNLDHLTREPEQVKAFRDTWR--DGIHSYLQYLRDRLVVARELLTDS 224
Query: 100 GTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
G+ +V N+ R+ ++ ++ K++ +G + L+W
Sbjct: 225 GSCFVQIGDENVHRVRALMDEVFGEENFCSLIAYKTSVGLGSQGLDNTANY--LVWYCKD 282
Query: 159 PKAKGYT 165
++ +
Sbjct: 283 IGSRKFR 289
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
++ A A S + + K ++ + D SG + ++ K++
Sbjct: 365 WRTAQTGFRRAIRSDRIMPTGKSLSYRKFFDDFSAISMDNFWTDVSGG--ITSRADPKVY 422
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
Q ++ R L+ +T PGD++LDP GSGT+ VA++ R +I I+ + + +A R
Sbjct: 423 VVQTSTKIIERCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARAR 482
Query: 265 IASVQ 269
I +
Sbjct: 483 IMGAK 487
>gi|240143545|ref|ZP_04742146.1| prophage LambdaMc01, DNA methyltransferase [Roseburia intestinalis
L1-82]
gi|257204476|gb|EEV02761.1| prophage LambdaMc01, DNA methyltransferase [Roseburia intestinalis
L1-82]
Length = 480
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 54/279 (19%), Positives = 99/279 (35%), Gaps = 46/279 (16%)
Query: 20 KDKIIKGNSI------SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ +++ GNS +L + L+ DPPY + + + S+ D
Sbjct: 214 RHRLMCGNSTNAKDREELLAGAEPE---LMLTDPPYCSGGHQESGKSTGSIGTVRKGQTD 270
Query: 74 ------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
S Y A + +V + + +++ F + +
Sbjct: 271 APKIANDILSTRGYIKLLTAAFEGITPLF-----AYVFTDWRMWIYLYDIIEKSGFGVRS 325
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
IVW K P G +++ HE ++ S ++ +
Sbjct: 326 MIVWDKETPGM---GVGWRSQHELCLFGSRG----------------------KAKFDGH 360
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
G+ ++ G +LHPTQKP L+ IL + + DPF GSGT+ A A+K +
Sbjct: 361 KGYGNVLRCSRSGNELHPTQKPVELMEMILDNMDFVK-TVYDPFGGSGTTLAAAEKTGHT 419
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
+E+ Y D+ KR + + + G +P
Sbjct: 420 AYLMELTPGYTDVIVKRYFRITGNKDQIQLIRDGAPADP 458
>gi|189346973|ref|YP_001943502.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
gi|189341120|gb|ACD90523.1| DNA methylase N-4/N-6 domain protein [Chlorobium limicola DSM 245]
Length = 906
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 24/169 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 131 WANRMILGDSLQVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSRDVKDGNTDH 190
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L R +L +G+++V N+ R+ +
Sbjct: 191 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTESGSIFVQIGDENVHRVRAL 248
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + + + + ++W + + +
Sbjct: 249 MDEVFGDENFLSLVSFQTSTGRTSKTLDTVS-DYILWYAKNSDVVKFRQ 296
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 3/159 (1%)
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + +G M + + R++ + + KA
Sbjct: 310 DFKEEYELGDMTSQHPSDTRSCEIEFHGEYFKPSSARQWAFDPQNIY---RLEKADRVVR 366
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+ + R+ + +K++ Q ++ R ++ +T PGD+
Sbjct: 367 FSEKQIRWKKYSSERAKGKFHNVWTDTQFGAFASDKIYVVQTHRKVIDRCILMATDPGDL 426
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++DP GSGT+ VA++ R +I I+ + + +A RI
Sbjct: 427 VIDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARARI 465
>gi|115289057|gb|ABI85541.1| M.Hin1056ModP-3 [Haemophilus influenzae]
Length = 404
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 21/163 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L + LI+ DPPYN +G Y DKF
Sbjct: 206 ENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKYN-------------DKF- 251
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L + +L +G ++V + + ++ L + +
Sbjct: 252 NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDELFHHRETIVALTSTAS 311
Query: 137 MPN----FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
N RG + E +++ S SPK + + +N
Sbjct: 312 GVNAVNVKRGEQMFKLKEYILFYSKSPKFRFNPLLIKSPFNSN 354
>gi|254411435|ref|ZP_05025212.1| hypothetical protein MC7420_1926 [Microcoleus chthonoplastes PCC
7420]
gi|196181936|gb|EDX76923.1| hypothetical protein MC7420_1926 [Microcoleus chthonoplastes PCC
7420]
Length = 118
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 50/114 (43%)
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+ + + W P G ERL+N+ + LH QKP L+ I+++++ GD
Sbjct: 3 QWSKMRAKWHHSHGITNVWSEPAVRGKERLKNRQAKCLHGNQKPLRLIELIILATSDVGD 62
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
++ +PF G ++ V+ + R E+ DY +A R+ N L
Sbjct: 63 VVWEPFGGMCSAAVVSLRKGRRCYSAEVNSDYYQLAKARLEQEYERINSFLFPE 116
>gi|237740843|ref|ZP_04571324.1| LOW QUALITY PROTEIN: type III restriction-modification system
methylation subunit [Fusobacterium sp. 4_1_13]
gi|229431140|gb|EEO41352.1| LOW QUALITY PROTEIN: type III restriction-modification system
methylation subunit [Fusobacterium sp. 4_1_13]
Length = 633
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 18/165 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ L + +I+ DPPYN + ++
Sbjct: 46 EESKNWDSTENIYIEGDNLEVLKLLQKSYHGKIKMIYIDPPYNTGKDFVYKDNFTDNIEN 105
Query: 68 VTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + + + L R +L +G +++ +
Sbjct: 106 YKEITGQINKEGIKLTTNTETNGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDNEQA 165
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + + Q HE ++ S
Sbjct: 166 NLKKICDEIFGEENFIGTIIYDKGNAQNDAINLQKNHEYMLVCSK 210
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
++++ ++S W G++ L K+ K + L+ ++L+ TK +IIL
Sbjct: 357 KKFIYESKNINIKSIWNFSSSEGTKELNKLFQAKVFENSKNKELIKKLLLIITKSDEIIL 416
Query: 229 DPFFGSGTSGAVAKK------LRRSFIGIEM 253
D F GS T+ + R +I +++
Sbjct: 417 DFFSGSATTAHSVMQLNAEDGGNRKYIMVQL 447
>gi|289450512|ref|YP_003475499.1| DNA (cytosine-5-)-methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289185059|gb|ADC91484.1| DNA (cytosine-5-)-methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 632
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 17/172 (9%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ + IIKGN++ L L V I DPPYN Q + + +++
Sbjct: 185 NDNDNLIIKGNNLIALAGLLKRYEGKVKCICIDPPYNTQND--------------SFNYN 230
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ + F + L C+R+L G++++I + + ++ + +
Sbjct: 231 DSFNHSTWLTFMKNRLEICKRLLATTGSIFIILDDNEYAYCKVLTDDILGRENHKATFIW 290
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
++ +H ++ + Y + D +N D R W
Sbjct: 291 NHRKSKQNDIDISLSHNYVMCYIKESSTRLYPLSVDEEGFSNPDNDPRGPWK 342
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
D + + T K E+L+ RI+ ST DI+LD F GSGT+ AVA K+ R +IG+E
Sbjct: 440 DTKNVFSTPKSESLIERIISISTNEKDIVLDFFTGSGTTAAVAHKMGRRYIGVEQMDYIQ 499
Query: 259 DIATKRIAS 267
DI +R+
Sbjct: 500 DITVERLKK 508
>gi|118576466|ref|YP_876209.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194987|gb|ABK77905.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 259
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 31/242 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + LE S + DP YN + G + YD +
Sbjct: 40 DVLETLESARDAS--AVILDPWYNRGVGGVRH---------------------NYDEWLG 76
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
+ V ++V G + R+ L L + P+
Sbjct: 77 TVVDRSFDVAD---HVYVWGFPQIVCRVLDKLPPK--TELTAWITWYYKNCPSMIRGWRS 131
Query: 147 NAHETLI---WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+ L + T + + + + + +
Sbjct: 132 AQYTCLHLSRDGARLYPENFMTEEQQERYREGKMRYIPGPPSVLEVPLNIGFVGRGEQTG 191
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP QKP + ++ S+K GD+++DP GSGT+G V L R + +M ++Y +A K
Sbjct: 192 HPAQKPLKTIEPLVKMSSKEGDLVIDPMCGSGTTGVVCNMLNRKAVLCDMSEEYTALARK 251
Query: 264 RI 265
R+
Sbjct: 252 RV 253
>gi|317182610|dbj|BAJ60394.1| putative type III restriction enzyme M protein [Helicobacter pylori
F57]
Length = 611
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 23/194 (11%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 165 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 210
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L R L +G ++V + + ++ + D + +
Sbjct: 211 HSSWLVFMKNRLEVAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFDAIIWRKIEE 270
Query: 138 PNFRG------RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
G + HE ++ + + N+ + +D +G
Sbjct: 271 NASSGGTMKITHTIRKDHEYILIYYKNKADFRTNKFLELPNFDNDYKNLDNDPRGEFKAG 330
Query: 192 SERLRNKDGEKLHP 205
S ++ K +
Sbjct: 331 SISMKGTINSKNYY 344
>gi|291529735|emb|CBK95321.1| DNA modification methylase [Eubacterium rectale M104/1]
Length = 307
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 86/259 (33%), Gaps = 27/259 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I+G+ L L KS+D I D P L +F YD
Sbjct: 65 LIEGDGRD-LSILEDKSIDCIITDHP-WLDKKANK---------------GGSRNFAQYD 107
Query: 83 AF--TRAWLLACRRVLKPNGTLWVIG------SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F T A + RVLK L I +Y ++R+ M + F + + W+K
Sbjct: 108 CFEYTPADFIEKARVLKQGSFLCEIIPAESATNYEYLYRLKKMAEAAGFQYYSKVPWKKG 167
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ N + + P+ K + N M + +
Sbjct: 168 TFVSNTGRKAKNTEDCLIFSLGPARKLRPDKQRG-LDANGNPTRFMSGAAGMLPTEFDYQ 226
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+K +KP L ++ TKP +I+LD F GSG G A R + E
Sbjct: 227 QVSKKDRIAQS-EKPVELFETLIGYLTKPEEIVLDQFAGSGVCGEAAINTGRGCVLFEKV 285
Query: 255 QDYIDIATKRIASVQPLGN 273
+ D R+ P+
Sbjct: 286 HELCDKICDRLGLTAPVMQ 304
>gi|254805305|ref|YP_003083526.1| putative type III DNA modification methylase [Neisseria
meningitidis alpha14]
gi|254668847|emb|CBA06907.1| putative type III DNA modification methylase [Neisseria
meningitidis alpha14]
Length = 562
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)
Query: 19 WKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L + V +F DPPYN +D
Sbjct: 43 FDNRLIFGDNLLALKALEQEFTSKVKCVFIDPPYNTGSAFA--------------HYDDG 88
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRK 133
+ R L +R+L +G+LW+ + + + + + +IVW
Sbjct: 89 LEHSIWLGLMRDRLEIIKRLLSDDGSLWITIDDNEAHYLKVLCDEVFGRGNFIANIVWNH 148
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+ + + H + S DA K +N D R W
Sbjct: 149 RKSVQSDIVISLSHNHLLVFAKSKDKVTLNRLQLVDAEKYSNPDNDPRGLWY 200
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
T KPE LL ++L +T PGD++LD F GSGT+GAVA K+ R +I +E+ +
Sbjct: 300 FDTPKPERLLEKVLQIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGEHCHTHIIP 359
Query: 264 RIASVQPLGNI 274
R+ V +
Sbjct: 360 RLQKVIDGKDQ 370
>gi|154244502|ref|YP_001415460.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154158587|gb|ABS65803.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
Py2]
Length = 752
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 105/292 (35%), Gaps = 39/292 (13%)
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y + + ++ R P+G ++ + + LQ + + R
Sbjct: 257 NETYQEYDQDYVDQYYRYKDPSGRRFMSDNLN-----AAGLQGGGYPYEWKGIKRTWRCP 311
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
P R + E I+ + + + + +A + + + + G E
Sbjct: 312 PETMKRLDE---EGKIFYTKNGVPRLKRYLDEAKGLSCQTLWADKAVQYVVSWGQE---- 364
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ TQK E+LLSRI+ +S+KPGD+I D F GSGT+ AVA+KL R +IG ++ +
Sbjct: 365 ---NTGYETQKSESLLSRIIDASSKPGDLIADFFCGSGTTLAVAEKLGRKWIGADLGRFA 421
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
I + KR+ VQ R+ + + L Q
Sbjct: 422 IHTSRKRMIGVQRGLQEA---GKPYRSFEILNLGKYERQYFAGIDPTLPEEQRRAI---- 474
Query: 318 ADGTLISGTE----LGSIHRVGAKVSGSETCNGWNFWYFEKLGELH---SIN 362
+L + S ++ ++ +K G L I+
Sbjct: 475 ---SLQKEEHYLTLILSAYKAERVFQSPP-------FHGKKAGALVLVGPID 516
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 30/207 (14%)
Query: 19 WKDKIIKGNSISVLEKLPAK----SV------DLIFADPPYNLQLNGQL----------Y 58
W +K+I G++ V+ L + L++ DPP+++ +
Sbjct: 88 WANKLIWGDNKLVIASLKNGPLRRQIEDAGGLKLVYIDPPFDVGADFSFDIEVGDESFTK 147
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+P A D+W + ++Y L R +L P+G+L+V + + +L
Sbjct: 148 QPSVIEEVAYRDTWGAGT--QSYVHMLYERLCLIRDLLSPDGSLYVHVGWQVSGYVRVIL 205
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ N + +AH + + Y + NE
Sbjct: 206 DEIF----GKGGAPGLPGFRNEIAWKCTSAHSDSGRYGINWQTIFYYTKGGS-YTLNETY 260
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHP 205
Q + R ++ G +
Sbjct: 261 QEYDQDYVDQYY---RYKDPSGRRFMS 284
>gi|253687245|ref|YP_003016435.1| Site-specific DNA-methyltransferase (adenine-specific)
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251753823|gb|ACT11899.1| Site-specific DNA-methyltransferase (adenine-specific)
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 658
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 28/209 (13%), Positives = 56/209 (26%), Gaps = 22/209 (10%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD-- 66
N ++ I+G+++ VL+ L V LI+ DPPYN PD+
Sbjct: 121 NSKDWDTTQNVFIEGDNLEVLKILQRHYHNKVKLIYIDPPYN--KGKDFIYPDNYKEGLN 178
Query: 67 -------AVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
V + K S+ + L R +L +G +++ +
Sbjct: 179 SYLEWTRQVNEEGKKVSTNSETEGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDNEQ 238
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + H+ ++ S
Sbjct: 239 DNLKKLCNEVFGEGNFLGQIVWKKKTNGNNMGVIPPVHDYIVVYSRRLSDALNIGYPITQ 298
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDG 200
+ + D + + N G
Sbjct: 299 EHIEKTYSNPDDDPRGPWTTMDLSANHKG 327
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 182 SDWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
D + +RN G+ KL KP LL + +T I+LD F GS T+
Sbjct: 395 WDNHGMNEDATNEIRNLFGKSKLFTHPKPSQLLYNLAKIATNDNSIVLDFFAGSATTAHA 454
Query: 241 AKKLR------RSFIGIEM 253
+L R FI +++
Sbjct: 455 VMQLNAEDNGKRRFIMVQL 473
>gi|13487817|ref|NP_108695.1| putative methylase [Lactococcus phage Tuc2009]
gi|5001703|gb|AAD37103.1|AF109874_9 putative methylase [Bacteriophage Tuc2009]
Length = 252
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 27/238 (11%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL +G + + DK + F
Sbjct: 20 KAQLVIADIPYNLGKNAYASSNAWYIDGDNKNGESEKANTEFFDTDKDFRIAEFMHFCNR 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ I + + F +V+ K +
Sbjct: 80 MLIKEPKEKGKAPAMIVFCAFQQIQMVMDYGEKYGFKHAYPLVFIKDYSAQVLKANM--- 136
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
A Y K + + NK K+HPTQ
Sbjct: 137 ---------KIVGATEYAVVLYRDKLPKFNNNGEMIFNWMPWGRD----NKTIPKIHPTQ 183
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KP+++L R++ T GD I+DP GSG++ + +L R+ G E+K+D+ ++A +++
Sbjct: 184 KPQSVLKRLIEIFTDKGDTIIDPCMGSGSTIRASIELGRNAYGFEIKKDFYNLAKEKM 241
>gi|84685896|ref|ZP_01013792.1| DNA methylase, putative [Maritimibacter alkaliphilus HTCC2654]
gi|84665989|gb|EAQ12463.1| DNA methylase, putative [Rhodobacterales bacterium HTCC2654]
Length = 1059
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 70/173 (40%), Gaps = 25/173 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL-----YRPDHS----- 63
W ++++ G+S+ V+ L V +I+ DPPY ++ +P+ +
Sbjct: 257 WSNRLVAGDSLLVMNSLLTKESMGGKVQMIYIDPPYGIKYGSNFQPFTNKKPNQTNDKEE 316
Query: 64 -------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
++ A D+W+ + +Y + R L+ R +L P G+++V S N+ +
Sbjct: 317 DLTAEPEMIRAFRDTWELGA--HSYLTYLRDRLVLSRELLDPTGSVFVQISDENLHSVRA 374
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
++ + + +P + + ++ ++W + + YD
Sbjct: 375 LMDEVFGAENFMNIIAYRTKIP-LGTKYLASIYDYIVWFAKDKSQIKFRKLYD 426
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
SD+ + + +K + + E ++ R L+ +T PGD++LDP G GT+
Sbjct: 525 RFEFSDFPVQEYANVWTTTQGASDKSYVVETSERVIERCLLMTTDPGDLVLDPTCGGGTT 584
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ------PLGNIELTVLTGKRTEPRVAFN 291
V++K R +I + + I +A +R+ + + L T P +
Sbjct: 585 AFVSEKWGRRWITCDTSRVAITLAKQRLMTASFDYYALRYPHEGLKGGFDYETVPHITLK 644
Query: 292 LLVERGLIQPGQILTNAQ 309
+ I + +
Sbjct: 645 SIANNPDI---DTIYDED 659
>gi|307273969|ref|ZP_07555179.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0855]
gi|306509277|gb|EFM78337.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0855]
Length = 341
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/221 (12%), Positives = 63/221 (28%), Gaps = 19/221 (8%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ + + I+G+++ VL+ L V LI+ DPPYN +
Sbjct: 82 PNSSKSKKFDDTNNLYIEGDNLEVLKILQKSYSDKVKLIYVDPPYNTGKDFVYKDNFEDS 141
Query: 65 VDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+D + + S + L R +L +G +++
Sbjct: 142 LDNYLEQTGQVDSEGNNFSVNPETNGRYHTDWLNMMYPRLKLARNLLTEDGVIFISIDDA 201
Query: 110 NIFRIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
+ + + V + P + F +H+ ++ +
Sbjct: 202 EQANLKKIADEIFGEKNFLAQVIWERAYSPVNLKKNFSESHDYILVYGKNASIIESNGLK 261
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ A + +D S + + ++ P
Sbjct: 262 RSDDANDRYSNPDNDPRGDWKSSDLSVGPAIEKNIYEIVTP 302
>gi|255524749|ref|ZP_05391700.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
P7]
gi|255511522|gb|EET87811.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
P7]
Length = 345
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 22/247 (8%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
S+ E + ++ I+G+++ VL+ L + +I+ DPPYN +
Sbjct: 92 SRGTLRPFREESKNWDTTENLYIEGDNLEVLKLLQKSYQNKIKMIYIDPPYNTGNDFVYK 151
Query: 59 RPDHSLVDAV-------TDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLW 103
+ D +K S+ + L R +LK +G ++
Sbjct: 152 DDYKDNLQNYFEVTGQVDDDGNKTSTNSESSGRYHTNWLNMMYPRLRLARNLLKDDGVIF 211
Query: 104 VIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-- 160
+ + + + + + R + ++ + ++ +
Sbjct: 212 ISIDDNEFGNLKKVCDDIFGEDNFLGNIVRATGQTTGQDSGGLGSSFDYVLAYTKISGVD 271
Query: 161 -AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
+ +D + NED + + + +GS R + + P+ + +
Sbjct: 272 LSGLPLTEHDLKRFDNEDERGKYAYDQMRKTGSNDRREDRPNMYYSIKDPDGNDIYPIAA 331
Query: 220 STKPGDI 226
+
Sbjct: 332 AGYESCW 338
>gi|1498743|gb|AAC44855.1| aatII methylase [Acetobacter aceti]
Length = 331
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/273 (16%), Positives = 86/273 (31%), Gaps = 44/273 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN-LQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++I L +LP S+ + DPPY ++ + ++ S V W SF+
Sbjct: 50 TYVLDDAIHFLSELPPNSIHAVVTDPPYGVIEYEDKHHQKLRSGRGGV---WRIPPSFDG 106
Query: 81 YDAFTRAWLLA-------------------CRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
R L P G +++ + + Q
Sbjct: 107 VKRSPLPRFTVLSEDELNRLSSFFSALAYGLHRALVPGGHVFMAANPLLSSMVFHAFQTA 166
Query: 122 NFWILNDIVWRKSNPMPNFRGR----------RFQNAHETLIWASPSPKAKGYTFNYDAL 171
F +++ R + + P + + N
Sbjct: 167 GFEKRGEVIRLVQTLRGGDRPKGAEKEFSDVSMMARSCWEPWGMFRKPFSGPASTNLRTW 226
Query: 172 -----KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG-D 225
+ ++ + L G ER HP+ KP+ L +++ ++ G
Sbjct: 227 GTGGLRRISDTEPFKDVILCSPTRGRER-----EIAPHPSLKPQRFLRQVVRAALPLGIG 281
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
II DPF GSG++ A A+ + IG + Y
Sbjct: 282 IIYDPFAGSGSTLAAAEAVGYRAIGTDRDAQYF 314
>gi|150008744|ref|YP_001303487.1| methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|149937168|gb|ABR43865.1| methyltransferase [Parabacteroides distasonis ATCC 8503]
Length = 602
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 27/219 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
I+E++++ +I+G+++ L L +D+I+ DPPYN N +Y
Sbjct: 63 PERTIISEDKDAPN---HILIEGDNLEALATLAYTHEGKIDIIYIDPPYNTGNNDFIY-- 117
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ- 119
D+ D D + + +F L +++L G +++ + + +
Sbjct: 118 ----NDSYVDKEDSYR-HSKWLSFMSRRLRIAKKLLSDYGVIFISIDDNEQADLKILCDS 172
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS-------------PSPKAKGYTF 166
+ R F HE ++ S K Y
Sbjct: 173 IFMPSNFCGQFIWRKKSGGGQTDRYFVTEHEYILVYQATNKFCWKDIQIEKSRKNYKYQD 232
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ + S S ++N DGE +P
Sbjct: 233 EKGSYNLIKLEKWGSSAHKEDRPSMYFPIKNPDGEDFYP 271
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ + KP +L+ ++ S + ILD F GSGT+ +L
Sbjct: 345 EKDVFQNPKPLSLIKELI--SHNSANYILDFFSGSGTTLHATMQLN 388
>gi|328545669|ref|YP_004305778.1| ParB domain protein nuclease [polymorphum gilvum SL003B-26A1]
gi|326415409|gb|ADZ72472.1| ParB domain protein nuclease [Polymorphum gilvum SL003B-26A1]
Length = 492
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 88/263 (33%), Gaps = 38/263 (14%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLY--------RPDHSLVDAV 68
+ +++ G+SI V+ + + L DPPY + +G + R
Sbjct: 214 EHRLLCGDSISAKDVIRLMNGERAALFATDPPYLVDYDGTNHPTKKNASARAKKIANKDW 273
Query: 69 TDSW-------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+D + D + Y+AF + + +K + + + +
Sbjct: 274 SDDYIEQKHWDDSSQGPQFYEAFMQVAIDCA---IKEDAAWYCWHASRRQAMLEACWSKF 330
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ I+W KS P+ AHE ++ S
Sbjct: 331 DVLHHQQIIWAKSRPV--LTRSIMLWAHEPCLFGWRSGNKPRVNREGFENWPTTVWSIPS 388
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
S + + HPT KP + + + T PG+I +PF GSG+
Sbjct: 389 S---------------EIETREHPTSKPVRVFTLPMELHTVPGEICYEPFSGSGSQIIAG 433
Query: 242 KKLRRSFIGIEMKQDYIDIATKR 264
++ R G+E+ + + D+ R
Sbjct: 434 ERTGRRVYGLELSETFCDVIVNR 456
>gi|293372203|ref|ZP_06618590.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
gi|292632829|gb|EFF51420.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
Length = 251
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 32/240 (13%)
Query: 39 SVDLIFADPPYNLQLN----GQLYRPDHSLVDAVTD-------SWDKFSSFEAYDAFTRA 87
LI AD PYN+ N + D + ++ DK + F
Sbjct: 21 KAQLIIADIPYNIGKNAYGSNPSWYIDGDNSNGESELAGKEFFDTDKDFRITEFLHFCSK 80
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + + V + F + + ++V++K+ +
Sbjct: 81 MLVKEPKEKGKSPCMIVFCEFQQQFELIQKAKEYGLNKYINLVFKKNFSAQVLKANM--- 137
Query: 148 AHETLIWASPSPKAKGYTF--NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
Y D L N +M + R+ D ++HP
Sbjct: 138 ---------KVVGNCEYGVLLYRDKLPKFNNGGRMVFNCFDYP-------RDIDTPRIHP 181
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQK LL R++ T GD+++DP GSGT+ A + R G E+K+ + A K I
Sbjct: 182 TQKSVPLLERLIELFTDAGDVVIDPCAGSGTTLLAAAQCGRKAYGFEIKKKFYADANKII 241
>gi|238025694|ref|YP_002909925.1| hypothetical protein bglu_1g00160 [Burkholderia glumae BGR1]
gi|237874888|gb|ACR27221.1| Hypothetical protein bglu_1g00160 [Burkholderia glumae BGR1]
Length = 674
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 62/168 (36%), Gaps = 28/168 (16%)
Query: 14 NSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDH----- 62
+ +W ++ +I+G+++ VL+ L SV L++ DPPYN + PD+
Sbjct: 93 DESLDWDGTRNLMIEGDNLEVLKLLHKSYAGSVKLVYIDPPYNTGR--EFVYPDNFADSL 150
Query: 63 -------------SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ + T++ +F + + L +L +G + + H
Sbjct: 151 RHYLALTGQAAGGVKLSSHTEASGRFHT--DWLNMMYPRLKLAFDLLARDGLIAIHIDEH 208
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + +++ + V P R HE+++ +
Sbjct: 209 ELPALVLVMREIFGEENELGVAVWDKRNPKGDARGLAYQHESIVLFAR 256
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 7/148 (4%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A L P+G ++ V ++ N R + F L V K P+P R
Sbjct: 312 EAMYDRLSPDGRVYRLVSMAWPNKKRA----PDDYFIPLVHPVTGKPCPVPERGWRNPPA 367
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
L+ T + +E+ + I GS+ R K
Sbjct: 368 TMRELLERGLIEFGADETTQPQRIYFLDENRYE-NVPSILPFGGSDDARLKSLAIPFDLP 426
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSG 235
KP + ++ T D+I+D F GSG
Sbjct: 427 KPTDFAAALIGWLTGGEDLIVDCFAGSG 454
>gi|297379795|gb|ADI34682.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori v225d]
Length = 625
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/250 (14%), Positives = 75/250 (30%), Gaps = 46/250 (18%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD----------- 66
+ II G+++ L+ L + + + +I+ DPPYN + + PD+ D
Sbjct: 102 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTKSD-DFIYPDNFRQDYQKILREVGLM 160
Query: 67 AVTDSWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
++ ++ S + +F L R +LK +G +++ +
Sbjct: 161 ETDENGEEIESESLKFFKNIQGSRTHSGWLSFMLPRLKLARDLLKEDGAIFISIDDNECA 220
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + RK+ N HE L+ + YT
Sbjct: 221 NLKILCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKN---YTNLLGGE 277
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA-------------LLSRILV 218
K ++ +D G+ + P P + +
Sbjct: 278 KDLDKYKNPDNDPNGAWTLGNPTKPGYAKIQNFPLINPHTKAIEYPPEGRSWVFTEKTIQ 337
Query: 219 SSTKPGDIIL 228
+ G ++
Sbjct: 338 NFINEGRLVF 347
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 18/142 (12%)
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST- 221
Y + + + + + + + E L GE K + +I++ ST
Sbjct: 362 HYLKDLKTTQKTFDSLIFSDNCYMNQTATKELLSLGMGE-YFTYPKGVEFMKKIILHSTT 420
Query: 222 -KPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEMKQD--------YIDIATKRIA 266
DIILD F GSGT+ + R FI +++ ++ D K +
Sbjct: 421 LNSNDIILDFFAGSGTTAQAVMELNAEDEGNREFILVQIDEEIKEDKSKSAYDFCKKELK 480
Query: 267 SVQPLGNIELTVLTGKRTEPRV 288
S +P+ + +T KR ++
Sbjct: 481 SAKPVISD-ITTERVKRAAQKI 501
>gi|172037500|ref|YP_001804001.1| DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
gi|171698954|gb|ACB51935.1| DNA methylase N-4/N-6 [Cyanothece sp. ATCC 51142]
Length = 371
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 59/322 (18%), Positives = 102/322 (31%), Gaps = 74/322 (22%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLN----------------------GQLYRPD 61
NS+ +++++P +S+DLI PP+ L ++ +P
Sbjct: 27 YLANSLKLMKEIPNESIDLICTSPPFALVRKKDYGNVEAEQYIEWFEPFAKEFYRILKPQ 86
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI--GSYHNIFRIGTMLQ 119
SL + SW K + F + CR K ++ ++N ++ T +
Sbjct: 87 GSLAIDIGGSWVKGYPIRSLYHF-ELVVHLCRPQNKGGLGFYLAQEIYWYNPAKLPTPAE 145
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-----------AKGYTFNY 168
+ + N L S + K
Sbjct: 146 WVTVRRERVKDAVNTIWWLCKEPHPKANNRNVLKPYSKAMKNLLKNGYKAKLRPSGHDIS 205
Query: 169 DALKAANEDVQMRSDWLIPICSGSE----------------------------------- 193
K + GSE
Sbjct: 206 TKFKNDRGGAIPPNIINTQDVEGSEIGDILIFDENDSENLYVPISGNVISASNTSSNDYY 265
Query: 194 --RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
R + + G K HP + P+AL + T+ GDI+LDPF GS +G VA+ L R +I I
Sbjct: 266 QKRCKQE-GIKRHPARFPQALPEFFINLCTEVGDIVLDPFAGSNMTGKVAETLDRKWIAI 324
Query: 252 EMKQDYIDIATKRIASVQPLGN 273
E++++Y+ + R S +
Sbjct: 325 EIEEEYVKGSKLRFESESSVSE 346
>gi|118578680|ref|YP_899930.1| DNA methylase N-4/N-6 domain-containing protein [Pelobacter
propionicus DSM 2379]
gi|118501390|gb|ABK97872.1| DNA methylase N-4/N-6 domain protein [Pelobacter propionicus DSM
2379]
Length = 626
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 17/115 (14%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 89 NLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGNDFVYPDNFQDNIKNYLELTGQVEG 148
Query: 69 -----TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+++ + L R +L +G L++ +Y + + +
Sbjct: 149 GAKISSNTEASGRFHTDWLNMVYPRLKLARNLLSEDGVLFISINYRELAHVLRLC 203
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 66/200 (33%), Gaps = 35/200 (17%)
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED---VQMRSDWLIPICSGSERLR 196
++G + + + Y+ + A D M SDW +G L
Sbjct: 306 WQGGEEEIKRLNIEGYLEFRDGTPFKRYYEDEEGAEHDPFYCFMESDWSSTSEAGKAELN 365
Query: 197 NKDGEK-LHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKL------RRS 247
G T KP LL ++ S T PG +I++D F GSGT+G R
Sbjct: 366 EILGNDHGFDTVKPTRLLKTLIQSITNPGNNEIVVDFFAGSGTTGHAVMAQNSADGGNRR 425
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
++ +++ +PL K + G + LT
Sbjct: 426 YVLVQL--------------PEPLDPE---NKDQKTAANFCD-----QIGKPRTIAELTK 463
Query: 308 AQGNISA-TVCADGTLISGT 326
+ +A V D TL +G
Sbjct: 464 ERLRRAAKKVKDDNTLFAGD 483
>gi|45580774|ref|NP_996640.1| adenine DNA methyltransferase [Bordetella phage BIP-1]
Length = 258
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/213 (21%), Positives = 77/213 (36%), Gaps = 30/213 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ---LNGQLYRPD------HSLVDAVTDSW 72
++I+G ++ L +P++SVD + DPPY+ + + PD S T S
Sbjct: 7 QLIQGEALPALIAMPSESVDAVITDPPYSSGGFSRDDKAKDPDAKYTQSGSQGRYPTFSG 66
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D +Y + W+ C RVLKP G + + + +Q + I W
Sbjct: 67 D-SRDQRSYLTWCSLWIAECVRVLKPGGYFMAFTDWRQLPLMSDAVQAGGVFWRGLIAWD 125
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
K F++ E ++W + VQ+ D C +
Sbjct: 126 KGRGARAPHKGYFRHQCEYVVWGTKGAA-----------------VQLEHDGPFDGCIQA 168
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
R+ K H T KP AL+ ++ G
Sbjct: 169 VVRRDD---KHHLTGKPTALMRELVRPVMPGGG 198
>gi|329849606|ref|ZP_08264452.1| DNA methylase family protein [Asticcacaulis biprosthecum C19]
gi|328841517|gb|EGF91087.1| DNA methylase family protein [Asticcacaulis biprosthecum C19]
Length = 959
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 24/168 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W +++I G+S+SV+ L V I+ DPPY ++ N S
Sbjct: 131 WANRMISGDSLSVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGAKDH 190
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L+ R +L +G+++V N+ R+ ++
Sbjct: 191 ITREPEQVRAFRDTWK--DGIHSYLTYLRDRLVVARDLLHESGSIFVQIGDENVHRVRSL 248
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ + F N N + ++W + S + Y
Sbjct: 249 MDEV-FGDENFASLIAFKKTTALTSEFLSNNFDYIVWYARSRPSLKYR 295
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+L+ Q ++ R ++ +T PGD++LDP GSGT+ A++ R +I I+ + I +A
Sbjct: 420 RLYVVQTATKVVQRCILMTTDPGDLVLDPTCGSGTTAYAAEQWGRRWITIDTSRVAIALA 479
Query: 262 TKRI 265
R+
Sbjct: 480 RSRL 483
>gi|332653909|ref|ZP_08419653.1| DNA methylase N-4/N-6 [Ruminococcaceae bacterium D16]
gi|332516995|gb|EGJ46600.1| DNA methylase N-4/N-6 [Ruminococcaceae bacterium D16]
Length = 575
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 13/236 (5%)
Query: 65 VDAVTDSWDKFSS-FEAYDAFT----RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
V+ ++ D F+ +EA + + L +++ + G + T +
Sbjct: 339 VEGFNNNKDHFNDAYEAILDYMVGEAQKVGLKAKQLTEITGVQMW--GHWFSKSQFTPIP 396
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
++ L ++ +P+ + + +N + + + F + ++E
Sbjct: 397 EWHYKKLQQAFKGRAFSLPHDQVMKLRNKPSEAYQSMKAEAMELRAFFDNTHNDSDEHDI 456
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
M W PI + +ER D H T KP AL R ++SS++PG++++D F GSG++
Sbjct: 457 MTDVWRFPITNTAER----DDAGGHATPKPIALCERAILSSSRPGELVVDFFGGSGSTLI 512
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
+ R+ IE++ + D+ +R ++ G+ + + R PR + E
Sbjct: 513 ACENTGRTCAMIELEPKWCDVIVRRY--IKTTGDNNVRCVRQGRELPREEIATIFE 566
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 19/160 (11%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ G+S+ V + + DL+F DPPY + + D+ + +
Sbjct: 204 HRLYCGDSLKMGDVQKATDGQRADLVFTDPPYGMGKESDGVQNDNQNQNDL--------- 254
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
F + W+ +LK NG+ + G + I + I + + ++
Sbjct: 255 ----LEFNKKWIALSFSILKENGSWYCWGIDEPLMDIYAFILRPM--IAANQITFRNYIT 308
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
N+ + + + N+D
Sbjct: 309 WAKHSAFGVNSEL-MRSYPRETEKCLFVMCGVEGFNNNKD 347
>gi|256545024|ref|ZP_05472392.1| type III restriction-modification system, methylase subunit
[Anaerococcus vaginalis ATCC 51170]
gi|256399320|gb|EEU12929.1| type III restriction-modification system, methylase subunit
[Anaerococcus vaginalis ATCC 51170]
Length = 616
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 22/218 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------- 54
E+ + + ++ I+G+++SVL+ L + +I+ DPPYN +
Sbjct: 88 EDSKNWNDTENLYIEGDNLSVLKLLQESYLGKIKMIYIDPPYNTGSDLIYIDDFVVDIEE 147
Query: 55 --GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ D + ++ + + + L+ R +L +G +++ +
Sbjct: 148 YNASIGLHDDEGLKLYRNTESNGRFHSYWCSMIYSRLMIARNLLASDGVIFISIDDNEQA 207
Query: 113 RIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + RK+ M G F HE L+ + A
Sbjct: 208 NLKKICDEVFGESNNVGEIIRKTKSMTADNGSGFNLQHEVLLVYAKDKNQIVLQGEPKAF 267
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ +D C+G ++ + P
Sbjct: 268 DNYSN---PDNDPNGEWCAGDPSAKSGGSSTYFEIENP 302
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRS 247
++ G + KP + +++ +T IILD F GS T+ + R
Sbjct: 379 EVKKLFGNDVFSYPKPVVFIQKLIKYATDKESIILDFFSGSATTAQAVMEQNAADGGNRK 438
Query: 248 FIGIEM 253
FI +++
Sbjct: 439 FIMVQL 444
>gi|161870247|ref|YP_001599417.1| type III restriction/modification system modification methylase
[Neisseria meningitidis 053442]
gi|161595800|gb|ABX73460.1| type III restriction/modification system modification methylase
[Neisseria meningitidis 053442]
Length = 371
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 81/242 (33%), Gaps = 49/242 (20%)
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
+ L R +L +G +++ YH + ++ + +
Sbjct: 1 MKNRLEIARELLADDGAIYINLDYHEVHYCKVLMDEIFGEYNFQREIIWRIGWVSGYKTT 60
Query: 145 FQN---AHETLIWASPSPKAKGY-------------------TFNYDALKAANEDVQMRS 182
N H+T+++ S + T N N++ +
Sbjct: 61 VSNYIRNHDTILFYSKDYNHLNFNKYYIDNKHFKVLVDLDRATKNTFTKFGINKETAEKI 120
Query: 183 DWLIPICSGSERLRNKD---------------------------GEKLHPTQKPEALLSR 215
I + ER +D G + QK E LL R
Sbjct: 121 LQEINFSNRPERYPLEDVWNANEYDDLNSIAIVSYSGESVSKMLGLEEIKGQKSEKLLKR 180
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
IL + TKP DI+LD F GSGT+ AVA K+ R +I IE D KR+ + +
Sbjct: 181 ILEAHTKPNDIVLDFFGGSGTTAAVAHKMNRQYICIEQIDKQTDTIVKRLNKILVNESSG 240
Query: 276 LT 277
++
Sbjct: 241 IS 242
>gi|301382136|ref|ZP_07230554.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
pv. tomato Max13]
gi|302058960|ref|ZP_07250501.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
pv. tomato K40]
gi|302134307|ref|ZP_07260297.1| putative site-specific DNA methyltransferase [Pseudomonas syringae
pv. tomato NCPPB 1108]
Length = 430
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 34/171 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY------------------------ 58
+ G+ + VL LPA S+D + DPPY ++ G+ +
Sbjct: 5 LHLGDCLEVLRGLPANSIDSVVTDPPYGIRFMGKSWDGQDIEDRAAYRASMPSHAGACGP 64
Query: 59 RPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
H V A +D A+ AFT W RVLKP G L + +
Sbjct: 65 NGGHRSVAAEAGKYDLTPDGMRAFQAFTLEWATEALRVLKPGGHLLSFAAARTYHHMAVG 124
Query: 118 LQNLNFWILNDIVWRKSNPMPNF---------RGRRFQNAHETLIWASPSP 159
++ F I + I+W + P G + AHE + A
Sbjct: 125 IEMAGFEIRDQIMWVFGSGFPKSHNLKGDRAGWGTALKPAHEPICMARKPF 175
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 34/70 (48%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP L++ +L T G LDPF GSG++G A FIGIE Y+ IA
Sbjct: 343 HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVLEGFDFIGIEQDAAYMAIAKA 402
Query: 264 RIASVQPLGN 273
RI
Sbjct: 403 RIGHAHANSQ 412
>gi|283786281|ref|YP_003366146.1| prophage DNA adenine methylase [Citrobacter rodentium ICC168]
gi|282949735|emb|CBG89354.1| putative prophage DNA adenine methylase [Citrobacter rodentium
ICC168]
Length = 350
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHYIATLPDNSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + +L F ILN I+W K + N
Sbjct: 58 RWLDRCLAEFWRVLKPAGSLYLFCG-HRLAADIEILMRDRFSILNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPADMLKQIISASSRPGDVVADFFMGSGSTLKAAIDLG 324
Query: 246 RSFIGIEMKQDYIDIATKRIA 266
R IG+E++ + + + I
Sbjct: 325 RKAIGVELETERFNQTVEEIR 345
>gi|116750281|ref|YP_846968.1| DNA methylase N-4/N-6 domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116699345|gb|ABK18533.1| DNA methylase N-4/N-6 domain protein [Syntrophobacter fumaroxidans
MPOB]
Length = 938
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 18 EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 130 NWSNRMILGDSLQVMASLVEREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSRDVKDGNTE 189
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
V A D+W +Y + R L R +L G+++V N+ RI
Sbjct: 190 HITREPEQVRAFRDTWR--DGIHSYLTYLRDRLTVARDLLADTGSIFVQIGDENVHRIRA 247
Query: 117 ML 118
++
Sbjct: 248 LM 249
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G + EK++ Q + R L+ ST PGD++LDP GSGT+ VA++ R +I
Sbjct: 421 WGDTSTGSFTEEKIYAVQSGIKAVQRCLLMSTDPGDLVLDPTCGSGTTAYVAEQWGRRWI 480
Query: 250 GIEMKQDYIDIATKRI 265
I+ + + +A RI
Sbjct: 481 TIDTSRVALALARARI 496
>gi|257453506|ref|ZP_05618796.1| hypothetical protein ENHAE0001_1558 [Enhydrobacter aerosaccus SK60]
gi|257448964|gb|EEV23917.1| hypothetical protein ENHAE0001_1558 [Enhydrobacter aerosaccus SK60]
Length = 542
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 73/221 (33%), Gaps = 22/221 (9%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
N Q E +KII G+++ L+ L VD I+ DPPYN G +Y + +
Sbjct: 11 NGEQFDPVESGNKIIYGDNLEALKSLLPFYEGKVDCIYIDPPYNTGEEGWVYNDNVNHPK 70
Query: 67 -------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
V + S + + L +++L G +++ + + +
Sbjct: 71 IKKWLGQVVGKQSEDLSRHDKWLCMMYPRLQLLKQLLSDTGVIFISIDDNEQANLKLICD 130
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ L + M +G + ++A K Y Y N
Sbjct: 131 EIF--GLKAFITTIHCQMSTTQGMKVKSAQN-----GNIVKNAEYILCYSKDGHKNIAKN 183
Query: 180 MRSDWLIPICSGSERLRNKDG-----EKLHPTQKPEALLSR 215
D N+DG + ++ + P+ L ++
Sbjct: 184 PLYDLRPEYDEHYSLYLNEDGTIGQLKDIYDYRFPKDLNNK 224
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
N++ + + G T N++ ++R DW + +
Sbjct: 286 NSNGNIRQLLRLKNSWGKTDNFNQDVGL---RKIRGDWWEGFYIDMGNVSKEADTVFANG 342
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL------RRSFIGIEMKQDYIDI 260
+KP L+S++L S+ IILD F GSGT+ + R FI IE++ DI
Sbjct: 343 KKPVRLISQLLNMSSNRDSIILDSFAGSGTTAHAVLNINKQDGGNRKFILIELEDYANDI 402
Query: 261 ATKRIAS 267
+R+
Sbjct: 403 TAERVKR 409
>gi|163868805|ref|YP_001610029.1| type III restriction system methylase [Bartonella tribocorum CIP
105476]
gi|161018476|emb|CAK02034.1| type III restriction system methylase [Bartonella tribocorum CIP
105476]
Length = 610
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/212 (12%), Positives = 63/212 (29%), Gaps = 21/212 (9%)
Query: 13 QNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ +W ++ I+G+++ VL+ L + V +I+ DPPYN + +
Sbjct: 78 KKESVDWDTTQNLFIEGDNLEVLKLLQKPYHRQVKMIYIDPPYNTGNDFVYKDDFKDGIQ 137
Query: 67 AV-------TDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ K + + + L R +L+ +G +++ + +
Sbjct: 138 NYLEMTRQLDNEGKKIGTNSSSAGRYHTNWLNMMYPRLKLARNLLRDDGVIFISIDDNEV 197
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + + E +I S K
Sbjct: 198 HNLRKLCDEVFGEENFIAQFTWRKTDNQANIGNIARVKEYIILYSKESKTLKLNKMRLTE 257
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+A E + ++ R + K+
Sbjct: 258 RAKKEYRYKDNHGFYRRSILLDKTRGRHFYKI 289
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 19/198 (9%)
Query: 135 NPMPNFRGRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
M N + + ++ + + WA+ + G + +++ D S
Sbjct: 300 PWMINEKDFQDLSSKQAIYWATGKTELPYGKIYLHESQGQIAND--FLSIEFGTNQEAGV 357
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RS 247
L N + KP +L+ L +T D+ILD F GSGT+ +L R
Sbjct: 358 ALENLFNARYFDFPKPLSLIKHFLTIATN-DDLILDFFAGSGTTAHAVMQLNAEDGGKRR 416
Query: 248 FIGIEM------KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
I +++ K + K IA + L K E + A E G I
Sbjct: 417 CISVQLPEPTDEKSEAFKAGYKNIAEI---SKERLRRAGKKIKEEQSAQLDFNENGGIDT 473
Query: 302 GQILTNAQGNISATVCAD 319
G + + AD
Sbjct: 474 GFKVFKLDSSNIKRWEAD 491
>gi|59801068|ref|YP_207780.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae FA 1090]
gi|59717963|gb|AAW89368.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae FA 1090]
Length = 756
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 19/147 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ + L V LI+ DPPYN + +
Sbjct: 230 KQPVGEIKRRSDGTPAENLIIKGNNLIAMHSLAKQFKGKVKLIYIDPPYNTETDSF---- 285
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
A D + S + F + L + +LK +G ++V + +L
Sbjct: 286 ------AYNDKF----SHSTWLTFMKNRLEIAKELLKDDGLIFVQCDDKEQAYLKVLLDE 335
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ + + M G + +
Sbjct: 336 TF--TRENFINCIAVKMSEPSGNKMAH 360
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 535 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNENDIVLDYHLGSGT 586
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 587 TAAVAHKMNRQYIGIEQMDYIETLAVERMKK 617
>gi|218263848|ref|ZP_03477817.1| hypothetical protein PRABACTJOHN_03507 [Parabacteroides johnsonii
DSM 18315]
gi|218222447|gb|EEC95097.1| hypothetical protein PRABACTJOHN_03507 [Parabacteroides johnsonii
DSM 18315]
Length = 603
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 66/194 (34%), Gaps = 14/194 (7%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N +I+G+++ L L +D+I+ DPPYN +Y D+
Sbjct: 69 SNDKNAPNHILIEGDNLEALATLAYTHEGKIDVIYIDPPYNTGNKDFIY------NDSYV 122
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
D D + + +F L +++L +G +++ + ++ + + +
Sbjct: 123 DKEDSYR-HSKWLSFMSRRLKIAKKLLSEHGVIFISIDDNEQAQLKLLCDEIFNNNFVGM 181
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDALKAANEDVQMRSDWL 185
+ R + A + ++ S T + +++ S
Sbjct: 182 ISRATGTTTGQDTGSLGKACDYILVYSSKNNYVISGIPLTEKDLERYSLSDERGFFSILQ 241
Query: 186 IPICSGSERLRNKD 199
+ G +R ++
Sbjct: 242 LRRTGGEDRREDRP 255
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER----LRNKDGEKLHPTQKPE 210
K + Y +E+ R G+++ L+N K T KP
Sbjct: 298 YFKKDKNNEWKVYYK---FYSENKVKRPSNFWQDIEGNKKAQIELKNILESKKFDTPKPT 354
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIAT 262
L+ +IL + IILD F GSGT+ +L R I + ++ I ++
Sbjct: 355 DLIRKILGLANSSHSIILDFFAGSGTTLHATMQLNVEDGGHRQCILVTNNENNICEEVTY 414
Query: 263 KR 264
+R
Sbjct: 415 ER 416
>gi|167822072|ref|ZP_02453543.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 9]
gi|226193130|ref|ZP_03788740.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|225934730|gb|EEH30707.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei Pakistan 9]
Length = 671
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477
>gi|167916925|ref|ZP_02504016.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei BCC215]
gi|254357343|ref|ZP_04973617.1| type III DNA modification methyltransferase [Burkholderia mallei
2002721280]
gi|148026407|gb|EDK84492.1| type III DNA modification methyltransferase [Burkholderia mallei
2002721280]
Length = 674
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 104 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 163
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 164 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 221
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 222 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 258
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 314 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 369
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 370 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 428
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 429 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 480
>gi|76811368|ref|YP_331675.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1710b]
gi|126452068|ref|YP_001064331.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1106a]
gi|242315571|ref|ZP_04814587.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1106b]
gi|254186574|ref|ZP_04893091.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|76580821|gb|ABA50296.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1710b]
gi|126225710|gb|ABN89250.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1106a]
gi|157934259|gb|EDO89929.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|242138810|gb|EES25212.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1106b]
Length = 677
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 107 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 166
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 167 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 224
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 225 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 261
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 317 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 372
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 373 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 431
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 432 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 483
>gi|53724233|ref|YP_104200.1| type III DNA modification methyltransferase [Burkholderia mallei
ATCC 23344]
gi|254174912|ref|ZP_04881573.1| type III DNA modification methyltransferase [Burkholderia mallei
ATCC 10399]
gi|52427656|gb|AAU48249.1| type III DNA modification methyltransferase [Burkholderia mallei
ATCC 23344]
gi|160695957|gb|EDP85927.1| type III DNA modification methyltransferase [Burkholderia mallei
ATCC 10399]
Length = 677
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 107 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 166
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 167 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 224
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 225 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 261
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 317 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 372
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 373 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 431
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 432 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 483
>gi|53717681|ref|YP_106667.1| type III restriction-modification system methylase [Burkholderia
pseudomallei K96243]
gi|52208095|emb|CAH34025.1| type III restriction-modification system methylase [Burkholderia
pseudomallei K96243]
Length = 670
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 100 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 159
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 160 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 217
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 218 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 254
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 310 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 365
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 366 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 424
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 425 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 476
>gi|167813529|ref|ZP_02445209.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 91]
gi|254194748|ref|ZP_04901179.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei S13]
gi|169651498|gb|EDS84191.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei S13]
Length = 671
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477
>gi|126440391|ref|YP_001057101.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 668]
gi|167736454|ref|ZP_02409228.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 14]
gi|167900667|ref|ZP_02487872.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei NCTC 13177]
gi|126219884|gb|ABN83390.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 668]
Length = 671
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477
>gi|167843680|ref|ZP_02469188.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei B7210]
gi|167908886|ref|ZP_02495977.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 112]
gi|254260320|ref|ZP_04951374.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1710a]
gi|254219009|gb|EET08393.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1710a]
Length = 671
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477
>gi|254184109|ref|ZP_04890700.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1655]
gi|184214641|gb|EDU11684.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 1655]
Length = 671
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 44.3 bits (103), Expect = 0.034, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K PMP R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPMPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477
>gi|67641556|ref|ZP_00440332.1| type III DNA modification methyltransferase [Burkholderia mallei
GB8 horse 4]
gi|121598234|ref|YP_994560.1| type III DNA modification methyltransferase [Burkholderia mallei
SAVP1]
gi|124383968|ref|YP_001027824.1| type III DNA modification methyltransferase [Burkholderia mallei
NCTC 10229]
gi|126448952|ref|YP_001082228.1| type III DNA modification methyltransferase [Burkholderia mallei
NCTC 10247]
gi|134281343|ref|ZP_01768051.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 305]
gi|167001631|ref|ZP_02267425.1| type III DNA modification methyltransferase [Burkholderia mallei
PRL-20]
gi|167717412|ref|ZP_02400648.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei DM98]
gi|167892155|ref|ZP_02479557.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 7894]
gi|237814438|ref|YP_002898889.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei MSHR346]
gi|254201270|ref|ZP_04907634.1| type III DNA modification methyltransferase [Burkholderia mallei
FMH]
gi|254206611|ref|ZP_04912962.1| type III DNA modification methyltransferase [Burkholderia mallei
JHU]
gi|121227044|gb|ABM49562.1| type III DNA modification methyltransferase [Burkholderia mallei
SAVP1]
gi|124291988|gb|ABN01257.1| type III DNA modification methyltransferase [Burkholderia mallei
NCTC 10229]
gi|126241822|gb|ABO04915.1| type III DNA modification methyltransferase [Burkholderia mallei
NCTC 10247]
gi|134247010|gb|EBA47096.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 305]
gi|147747164|gb|EDK54240.1| type III DNA modification methyltransferase [Burkholderia mallei
FMH]
gi|147752153|gb|EDK59219.1| type III DNA modification methyltransferase [Burkholderia mallei
JHU]
gi|237505996|gb|ACQ98314.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei MSHR346]
gi|238522507|gb|EEP85951.1| type III DNA modification methyltransferase [Burkholderia mallei
GB8 horse 4]
gi|243062643|gb|EES44829.1| type III DNA modification methyltransferase [Burkholderia mallei
PRL-20]
Length = 671
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 160
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + TD+ +F + + L R +L +G + V H + +++
Sbjct: 161 GGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 218
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477
>gi|315616051|gb|EFU96675.1| DNA methylase family protein [Escherichia coli 3431]
Length = 349
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + + LP VDLI DPPY + + W + Y
Sbjct: 12 LINADCLEFIRSLPENFVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ + I ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCGHRRASDI-EIMMRERFSVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIIRASSRPGDLVADFFMGSGSTVKAALALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 325 RRAIGVELETGRFEQT 340
>gi|329122242|ref|ZP_08250832.1| site-specific DNA-methyltransferase [Haemophilus aegyptius ATCC
11116]
gi|327473915|gb|EGF19329.1| site-specific DNA-methyltransferase [Haemophilus aegyptius ATCC
11116]
Length = 245
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 30/240 (12%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL N G + ++ DK + F
Sbjct: 20 KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ I + + F +V+ KS+ +
Sbjct: 80 MLIKEPKERGKAPCMIVFCAFQQIPMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANM--- 136
Query: 148 AHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A Y D L N + +M + E+ K+ KLHP
Sbjct: 137 ---------KVVGATEYALILYRDKLPKFNNNGKMIKN-----WFEWEKDNRKEIPKLHP 182
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKP A+L R++ T GD+++DP GS ++ A++L R G E+K+D IA +++
Sbjct: 183 TQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEQM 242
>gi|217423829|ref|ZP_03455329.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 576]
gi|217392892|gb|EEC32914.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 576]
Length = 671
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 25/159 (15%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDH-------------- 62
++ +I+G ++ VL+ L V L++ DPPYN + PD+
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDF--VYPDNFTDSLRHYLELTGQ 158
Query: 63 ----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V + TD+ +F + + L R +L +G + V H + ++
Sbjct: 159 TAGGKRVTSHTDASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVM 216
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + V P R HE+++ +
Sbjct: 217 REIFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 367 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 477
>gi|300867534|ref|ZP_07112184.1| putative type III restriction-modification system, methylation
subunit [Oscillatoria sp. PCC 6506]
gi|300334422|emb|CBN57354.1| putative type III restriction-modification system, methylation
subunit [Oscillatoria sp. PCC 6506]
Length = 872
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 24/163 (14%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
W ++++ G+S+ V+ L V +I+ DPPY ++ +
Sbjct: 122 NWSNRLVAGDSLLVMNSLLEKEGMAGQVQMIYFDPPYGIKYGSNFQPFVNKRDVKDGKDE 181
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ A D+W+ +Y + R LL R +L G+++V S N+ +
Sbjct: 182 DLTQEPEMIKAFRDTWELG--IHSYLTYLRDRLLLARELLSETGSIFVQISDENLHHVRE 239
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
++ + F I IV + G Q+ + L+W
Sbjct: 240 LMDEV-FGIDKFIVIISIQKTGSSTGAFIQSNCDYLLWYVKDF 281
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+++ Q + + R ++ +TKPGD++LD GSGT+ VA++ R +I + + I +
Sbjct: 418 NRIYVVQTNQTAIQRCILMTTKPGDLVLDITCGSGTTAYVAEQWGRRWITCDTSRVAITL 477
Query: 261 ATKRIAS------VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG------------ 302
A +R+ + ++ +T P + + I+ G
Sbjct: 478 AKQRLMTATFDYYQLANSQAGVSDGFKYKTVPHITLKSIANNPEIREGMNRIEIEQAINK 537
Query: 303 ----QILTNAQGNISATVCADG 320
+ L + + G
Sbjct: 538 YAGQETLYDQPLLDKSKARVTG 559
>gi|170718367|ref|YP_001783592.1| DNA methylase N-4/N-6 domain-containing protein [Haemophilus somnus
2336]
gi|168826496|gb|ACA31867.1| DNA methylase N-4/N-6 domain protein [Haemophilus somnus 2336]
Length = 254
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 32/241 (13%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYN+ +G + + D+ + F
Sbjct: 27 KAQLVIADIPYNVGNNAYASSPEWYKDGDNKNGESDKANKAFFDTDENFRIAEFMHFCSK 86
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ I + + F +V+ KS+ +
Sbjct: 87 MLVKEPKERNQAPCMIVFCAFQQIQMVLEYAEKYGFKKHIPLVFIKSSSPQVLKANM--- 143
Query: 148 AHETLIWASPSPKAKGYT---FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
A Y + K N +++ R K KLH
Sbjct: 144 ---------KVVGATEYALILYREKLPKFRNNGKMIKNWMEWT------RDDRKKYPKLH 188
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PTQKP +L R++ T GD+++DP GSG++ A++L R+ G E+K+D A +
Sbjct: 189 PTQKPIDVLKRLIEIFTDEGDVVIDPVAGSGSTLRAARELGRNSYGFEIKKDVYQNAKEN 248
Query: 265 I 265
+
Sbjct: 249 M 249
>gi|46402138|ref|YP_006632.1| putative DNA adenine methylase [Klebsiella phage phiKO2]
gi|40218282|gb|AAR83068.1| putative DNA adenine methylase [Klebsiella phage phiKO2]
Length = 353
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ +S+ ++ LP S+D I DPPY +A + W S Y
Sbjct: 11 QLVHADSLEFIKTLPDNSIDAIITDPPYY-----------RVKANAWDNQW---PSVTDY 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + RVLKP G+L+V + +L F +LN I+W K + N
Sbjct: 57 LAWLDEFFAEFWRVLKPAGSLYVFCGP-KLSSDTELLLRDRFNVLNHIIWAKPSGRWNGA 115
Query: 142 GRRFQNAHE 150
+ A+
Sbjct: 116 RKEGFRAYF 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP ++ I+ +ST+PGD++ D F GSG + A +L R IG+E++++
Sbjct: 289 HPCEKPLQMMLDIISASTRPGDVVADFFMGSGATIKAALQLGREAIGVELEEERFLQTVS 348
Query: 264 RIASV 268
I +
Sbjct: 349 EIEKI 353
>gi|261419620|ref|YP_003253302.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
sp. Y412MC61]
gi|319766437|ref|YP_004131938.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y412MC52]
gi|261376077|gb|ACX78820.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
sp. Y412MC61]
gi|317111303|gb|ADU93795.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y412MC52]
Length = 477
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 60/205 (29%), Gaps = 27/205 (13%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS- 76
+ I+G+++ L+ L A ++ +I+ DPPYN V D+W K
Sbjct: 87 NWYIEGDNLEALKLLRTSHAGTIQMIYIDPPYNTG-----------KVLTYKDNWRKGKA 135
Query: 77 -----------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFW 124
+ L R +L G +++ + M
Sbjct: 136 VVPSGIQEEARGHVGWLNMMYPRLWVARELLAETGAIFISIDDTEQANLRKMCDEIFGER 195
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ P + H+ ++ + + + +A +D
Sbjct: 196 NFVATFIWQRAFSPVNMNKFASRNHDFILCYAKNIDRLAWYGLPRHPEADVRYANPDNDP 255
Query: 185 LIPICSGSERLRNKDGEKLHPTQKP 209
P SG + EK++ P
Sbjct: 256 RGPWMSGDLSVGPPIPEKIYKIVTP 280
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 178 VQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + + L+ DG + KP L+ R++ +T+ D+ILD F GS T
Sbjct: 336 TIWTHDEVSHSQEAKKELKELFDGLAVMDYPKPVKLIQRMVALTTRDDDLILDFFSGSAT 395
Query: 237 SGAVAKKLR------RSFIGIEM 253
+ + RSF+ +++
Sbjct: 396 TAHAVMQQNAEDGGRRSFMMVQL 418
>gi|149194672|ref|ZP_01871767.1| hypothetical protein CMTB2_04807 [Caminibacter mediatlanticus TB-2]
gi|149135095|gb|EDM23576.1| hypothetical protein CMTB2_04807 [Caminibacter mediatlanticus TB-2]
Length = 683
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 75/200 (37%), Gaps = 26/200 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYR 59
++N +N+NS ++ +IKG+++ VL+ L + +I+ DPPYN + N +Y+
Sbjct: 76 KENKEWNEQNKNS----ENLLIKGDNLEVLKHLVNAYENEIKMIYIDPPYNTENNDFVYQ 131
Query: 60 PDHS---------------LVDAVTDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
D + D D K +S A+ F L RR+L+ +G ++
Sbjct: 132 DDRKFTPEELSKLAGIDIEKAKRILDFLDSKSNSHSAWLTFMYPRLYIARRLLRKDGVIF 191
Query: 104 VIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK-- 160
+ + I ++ ++ RK+ + ++ S +
Sbjct: 192 ISIDDNEIAQLKILMDEIFGEENFIAQFIRKTGIAARLDATHISTEQDYILCYSKNLNLS 251
Query: 161 AKGYTFNYDALKAANEDVQM 180
+ F+ ED
Sbjct: 252 SFNKQFSNINKGYIYEDKHY 271
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 16/138 (11%)
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD-------- 183
+ + I + N++ ++
Sbjct: 313 NNGWCWRWSKDKVEWGIKNDFIVFKKDKAGNWKVYFKQYQFVDNDNKPIKRTLPFKTLLL 372
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVA 241
GS+ + +K+ KP L+ ++ + P DIILD F GSGT+G
Sbjct: 373 ENYNNEIGSKEILELFSKKIFSYPKPTTLIKFLINLVSNPDNNDIILDFFAGSGTTGDAV 432
Query: 242 KKLR------RSFIGIEM 253
+L R FI +++
Sbjct: 433 MQLNVENGVDRKFILVQL 450
>gi|324111107|gb|EGC05093.1| DNA methylase [Escherichia fergusonii B253]
Length = 652
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ K LA ++ N E K+ +IKG+++ VL+ + + V +I+ DPPYN +
Sbjct: 79 LPPKTLLAEDKTHNQQEENKNSQHLLIKGDNLEVLKHMVNAYAEKVKMIYIDPPYNTGKD 138
Query: 55 GQLYRPDH-------SLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKP 98
G +Y D S + + K SS A+ F L R +++
Sbjct: 139 GFVYNDDRKFTPEQLSELAGIDLDEAKRILEFTTKGSSSHSAWLTFIYPRLYIARELMRE 198
Query: 99 NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+GT+++ + ++ + + + N N HE ++ + +
Sbjct: 199 DGTIFISIDDNEFSQLKLVCDEIFGEQNHIGDIVWKNVTDN-NPSNIAVEHEYIVVYARN 257
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 20/203 (9%)
Query: 68 VTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ D D E Y + R W L + + G HN + G
Sbjct: 284 INDIKDDEKLQEEYTKWFRENKSQLWPLENYKFIDRKGVYSGERGIHNPGKEG------Y 337
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-MR 181
+ + + +K P R + +I + + A + Q +
Sbjct: 338 RYDIIHPITKKPCKQPLMGYRFPEATMLKMIDDGRIIFGEDENKLVEIKVYAKDYKQKLS 397
Query: 182 SDWLIPICSGSERLRNKDGE--KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
S I +G+ L+ E K K LL ++ + I+LD F GSGT+
Sbjct: 398 SVINIDGRAGANELKAIFPEMTKPFTNPKTIKLLEELISFACDGKGIVLDFFAGSGTTAH 457
Query: 240 VAKK------LRRSFIGIEMKQD 256
+ FI +++ +D
Sbjct: 458 AILNLNKEKGMNYQFITVQLDED 480
>gi|320538041|ref|ZP_08037943.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
gi|320145096|gb|EFW36810.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
Length = 643
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 30/226 (13%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---QLYRPDHS 63
E ++ I+G+++ VL+ L V +I+ DPPYN + + +
Sbjct: 103 REESVDFDNTENLYIEGDNLDVLKLLRETYLNRVKMIYIDPPYNTGEDFVYEDDFTESVA 162
Query: 64 LVDAVTDSWDKFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
A + +D+ + + L + +L +G +++ + +
Sbjct: 163 DYAARSGDYDEQGNRLVENPKTNGRFHTDWLNMIYPRLRLAKDLLSDDGVIFISIDDNEV 222
Query: 112 FRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP----------- 159
+ + + + R HE L + +
Sbjct: 223 HNLRKVCDEIFGEINFVNCFIWNCSTAGGIRPNFASKTHEYLFSYAKNKELLETFFAPLS 282
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
KA + K D + + DGE +HP
Sbjct: 283 KAAISMYKQKDEKGIYRDKDFVFKNDSKNINQKYEIVCPDGEIVHP 328
Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIE 252
+ ++ KP + I+ G IILD F GS T+ + R +I ++
Sbjct: 409 ENNRVFENVKPVDYIEYIIELIDTKGSIILDFFSGSATTAHAVMQLNAEDGGNRKYIMVQ 468
Query: 253 M 253
+
Sbjct: 469 I 469
>gi|239817554|ref|YP_002946464.1| Site-specific DNA-methyltransferase (adenine-specific) [Variovorax
paradoxus S110]
gi|239804131|gb|ACS21198.1| Site-specific DNA-methyltransferase (adenine-specific) [Variovorax
paradoxus S110]
Length = 624
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 28/215 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ VL+ L + LI+ DPPYN + + + +
Sbjct: 101 NLMIEGDNLEVLKLLQKSYAGKIKLIYIDPPYNTGKDFVYPDNFQDSIKNYLELTGQAEG 160
Query: 78 --------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LN 122
+ + L +L G +++ + + +
Sbjct: 161 GRKITSNTDASGRFHTDWLSMIYPRLKLASSLLCQEGHIFISIDDSEVANLRAVCNEVFG 220
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANEDVQ 179
+ + P + H+ ++ S A+ N D
Sbjct: 221 EENFVGCISWQKTYSPANDKKGIDAMHDYVVVYQRSDAARINLLPRTAKQDDAYTNPDDD 280
Query: 180 MRSDWLIPICSGSER-------LRNKDGEKLHPTQ 207
R W + +E ++ G ++ P Q
Sbjct: 281 HRGPWKAVDATRAEHRDYAFYPIQTPSGREVWPAQ 315
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSST--KPGDII 227
+ V + W ++ + + T KP L+ RIL T G+++
Sbjct: 355 KQGVVPTTWWTHEDAGHNDEAKKELKALFTETLPFDTPKPTRLIQRILQIGTTGNGGEVV 414
Query: 228 LDPFFGSGTSGAV------AKKLRRSFIGIEM 253
LD F GSGT+ A K R F+ +++
Sbjct: 415 LDFFAGSGTTAQAVLTANLADKGNRRFVLVQL 446
>gi|251772879|gb|EES53438.1| putative DNA methylase N-4/N-6 [Leptospirillum ferrodiazotrophum]
Length = 413
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 13/168 (7%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-F 75
+ ++ G+++ L+ L + V +I+ DPPYN + L + SW +
Sbjct: 38 RHTLVCGDNLDALKLLLPSLERKVRVIYIDPPYNTG--------NGLLYNDRFGSWGRDG 89
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
A+ + LL R L+ +G + + R+ + L V +
Sbjct: 90 DRHAAWLSMMAPRLLLAWRFLRDDGVFFASIDDRELPRLRLLCDEVFGEDNLVSTVIWRK 149
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
+ R E ++ + A E S
Sbjct: 150 KVVRGRGNRHILPQTEYILAYARDINALPPFHENLTPGMKKEYAHHDS 197
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 10/135 (7%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP-- 187
+ ++ R + +E L+ + + YT Y E + +
Sbjct: 231 IPCPTHQWRWSRETVERRKNEILMEKNRKGRWTVYTKQYLRSPEGEERKRTPESYYDRVT 290
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLR 245
G+ ++ GE + KP L+ ++ +T G D ++D F GSG++G +L
Sbjct: 291 TSDGTAEMKELFGEVILDFPKPSRLIRDLISWATPRGSSDPVMDFFAGSGSTGQAVLELN 350
Query: 246 ------RSFIGIEMK 254
R F ++
Sbjct: 351 AQDGGSRPFYLVQSD 365
>gi|119384800|ref|YP_915856.1| nuclease [Paracoccus denitrificans PD1222]
gi|119374567|gb|ABL70160.1| ParB domain protein nuclease [Paracoccus denitrificans PD1222]
Length = 463
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/269 (17%), Positives = 87/269 (32%), Gaps = 31/269 (11%)
Query: 20 KDKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDK 74
+ +++ G+S + +L + DPPY + +G + + + +WD
Sbjct: 180 EHRLLCGDSTSHDDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSTSYGTTWDD 238
Query: 75 FSSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
S YD F A L + N + + + + ++ I+W K
Sbjct: 239 SSQGAELYDGFIAAALAEA---ITENAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVK 295
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ +H + + D + S W +P + E
Sbjct: 296 DRGV-------LTRSH-----YLWKHEPCLMGWRRPNRPPKVADQTLPSTWEMPSFARDE 343
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R HPT KP + G + +PF GSG+ + R +E+
Sbjct: 344 RP-------DHPTPKPLDAFGIPMRQHVARGGLCYEPFCGSGSQIMAGEVNGRRVFAMEI 396
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGK 282
Y+D+A +R G + G+
Sbjct: 397 SPAYVDVAVER--WQAETGKDAILDGDGR 423
>gi|192360125|ref|YP_001982060.1| hypothetical protein CJA_1580 [Cellvibrio japonicus Ueda107]
gi|190686290|gb|ACE83968.1| hypothetical protein CJA_1580 [Cellvibrio japonicus Ueda107]
Length = 280
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 22/169 (13%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD-- 66
N ++ I+G+++ VL+ L + LI+ DPPYN + PD+
Sbjct: 58 NSKDWDTTQNVFIEGDNLEVLKILQRHYHNKIKLIYIDPPYNTGKDF--VYPDNYKEGLD 115
Query: 67 -------AVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
V + K S+ + L R +L +G +++ + +
Sbjct: 116 TYLEWTRQVNEDGKKVSTNSETEGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDNEV 175
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + + + N +G + + L+ + +
Sbjct: 176 DNLKKLCNEVFGEKNFIGCAGRITKKSNNKGDFWAPNFDYLLTYTRNID 224
>gi|297530406|ref|YP_003671681.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. C56-T3]
gi|297253658|gb|ADI27104.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. C56-T3]
Length = 477
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 29/206 (14%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS- 76
+ I+G+++ VL+ L A ++ +I+ DPPYN V D+W K
Sbjct: 86 NWYIEGDNLEVLKLLRTSHAGAIQMIYIDPPYNTG-----------KVLTYKDNWRKGKA 134
Query: 77 -----------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--F 123
+ L R +L G +++ + M +
Sbjct: 135 VVSSGIQEEACGHAGWLNMMYPRLWVARTLLAETGAMFISIDDTEQANLKKMCDEIFGER 194
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ +W+++ N + H+ ++ + + + +A +D
Sbjct: 195 NFIATFIWQRAFSPVNMN-KFASRNHDFILCYAKNIDRLAWYGLPRHPEADGRYANPDND 253
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKP 209
P SG + EK++ P
Sbjct: 254 PRGPWTSGDLSVGPPIPEKIYDIVTP 279
Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 178 VQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + + L+ G + KP L+ R++ +T+ D+ILD F GS T
Sbjct: 335 TIWTHDEVSHSQEAKKELKELFGGLAVMDYPKPVKLIQRMVALTTRDDDLILDFFSGSAT 394
Query: 237 SGAVAKKLR------RSFIGIEM 253
+ + RSF+ +++
Sbjct: 395 TAHAVMQQNAEDGGRRSFLMVQL 417
>gi|317181064|dbj|BAJ58850.1| fusion protein of dpnA and hopN [Helicobacter pylori F32]
Length = 95
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L+R+FIGIE +++Y IA K
Sbjct: 31 HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQIAKK 90
Query: 264 RIASV 268
R+
Sbjct: 91 RLNLF 95
>gi|283955232|ref|ZP_06372733.1| hypothetical protein C414_000430035 [Campylobacter jejuni subsp.
jejuni 414]
gi|283793269|gb|EFC32037.1| hypothetical protein C414_000430035 [Campylobacter jejuni subsp.
jejuni 414]
Length = 502
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 31/217 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD---------- 66
K+ IIKG+++ L+ L + + + +I+ DPPYN + + +Y D
Sbjct: 94 KNTIIKGDNLHALKLLKSAYYEKIKMIYIDPPYNTKNDKFIYNDDFVKEHKKLLMEVGLL 153
Query: 67 AVTDSWDKF--------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + ++ S A+ F L R +L+ +G +++ +
Sbjct: 154 EIDEEGEEIRSEILNFFINQKGDRSHSAWLGFMLPRLKLARDLLREDGVIFISIDDNEQA 213
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + RK+ N HE L+ + + +
Sbjct: 214 NLKILCDEIFGEENFVADFIRKTKSTTNDAKVGLNYQHEFLLCYAKDKN---FVNLFGGQ 270
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
K ++ +D S ++ D + + K
Sbjct: 271 KDLSKYKNPDNDPNGAWVSSDPTAKSGDIKTGYFAVK 307
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 14/145 (9%)
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK------AKGYTFNYDALKAANE 176
+ D + + + + + + K Y +
Sbjct: 310 YTNREDYPTNGRYWRFSQKTMQKHIDEGHICFKKKYKENERGFIYKRYLKELKTTLKTFD 369
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG-DIILDPFFGSG 235
++ + + + E L GE K + I+ +T D ILD F GSG
Sbjct: 370 SLRFVDNKFMNQNATKELLALGLGE-YFTYPKSVDFIKEIINHATNDNSDYILDFFAGSG 428
Query: 236 TSGAVAK------KLRRSFIGIEMK 254
T+ R FI +++
Sbjct: 429 TTAQAVIELNAEDNGNRKFILVQLD 453
>gi|48243679|gb|AAT40808.1| type III restriction-modification system methyltransferase-like
protein [Haemophilus influenzae]
Length = 518
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 24/184 (13%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + ++ ++ IIKGN++ L L V LI+ DPPYN +G Y
Sbjct: 186 KQAVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN- 244
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF + + F + L +++L +G ++V + + ++
Sbjct: 245 ------------DKF-NHSTWLTFMKNRLEIAKKLLADDGVIFVQCDDNEQAYLKILMDE 291
Query: 121 LNFW--ILNDIVWRKSNPMPN-----FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+ +N I+ SN N +G++F E ++ + T A +
Sbjct: 292 IFERENFINTIIPEMSNASGNKIKHAIKGKKFPKLKEYILLYAKDKNQINLTIPKQAKEK 351
Query: 174 ANED 177
+++
Sbjct: 352 WDKE 355
>gi|317179703|dbj|BAJ57491.1| Type III DNA modification enzyme [Helicobacter pylori F30]
Length = 460
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/190 (13%), Positives = 67/190 (35%), Gaps = 23/190 (12%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + +K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNKSTSEHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDNFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ ++ + + + + H+ ++ +
Sbjct: 194 DNEAAQLKLLCDEIFGEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLCYQKNSINFKQIDI 253
Query: 168 YDALKAANED 177
+ + ++
Sbjct: 254 DENDYSLKDE 263
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 1/191 (0%)
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ D+SL D + + + D + + + + + G
Sbjct: 252 DIDENDYSLKDEFYNERGGYKLNQNLDYNSLQYNKKMDYEIVISNKKFYAGGLETYTERQ 311
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAA 174
W+ + + N N T + +K Y Y
Sbjct: 312 KGNFGTIDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIEYFNRTKN 371
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
++ + S + + + + KP L+S ++ +T+ GDIILD F GS
Sbjct: 372 ISSIEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLIDQTTEKGDIILDFFAGS 431
Query: 235 GTSGAVAKKLR 245
GT+ +
Sbjct: 432 GTTAHAVLESN 442
>gi|319775706|ref|YP_004138194.1| DNA methylase [Haemophilus influenzae F3047]
gi|317450297|emb|CBY86513.1| DNA methylase [Haemophilus influenzae F3047]
Length = 245
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 30/240 (12%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL N G + ++ DK + F
Sbjct: 20 KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ I + + F +V+ KS+ +
Sbjct: 80 MLIKEPKERGKAPCMIVFCAFQQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANM--- 136
Query: 148 AHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A Y D L N + +M + E+ K+ KLHP
Sbjct: 137 ---------KVVGATEYALILYRDKLPKFNNNGKMIKN-----WFEWEKDNRKEIPKLHP 182
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKP A+L R++ T GD+++DP GS ++ A++L R G E+K+D IA +++
Sbjct: 183 TQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEQM 242
>gi|226324846|ref|ZP_03800364.1| hypothetical protein COPCOM_02633 [Coprococcus comes ATCC 27758]
gi|225207294|gb|EEG89648.1| hypothetical protein COPCOM_02633 [Coprococcus comes ATCC 27758]
Length = 143
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
++ K P N + + T S K + + + RS P
Sbjct: 10 CIFYKKLPTYNPQKTTGHSRKVTKAEHRKSCKDSPDYNEFGLTSYDSTERYPRSVLRFP- 68
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
++ +HPTQKP ALL ++ + T D +LD GSG++G R F
Sbjct: 69 -------KDIQKSAVHPTQKPVALLEYLIKTYTNEADTVLDNCMGSGSTGVACVNTERKF 121
Query: 249 IGIEMKQDYIDIATKRIASVQP 270
IG E+ + +IA +RI + +
Sbjct: 122 IGFELDLHFYEIAQERIMTTKK 143
>gi|261838795|gb|ACX98561.1| type III R-M system modification enzyme [Helicobacter pylori 51]
Length = 457
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/190 (12%), Positives = 65/190 (34%), Gaps = 23/190 (12%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEVLKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ ++ + + + + H+ ++ +
Sbjct: 194 DNEAAQLKLLCDEIFGEGNFVAQMPRLTKKAGKSTNQIAKNHDYVLCYQKNNINFKQIDI 253
Query: 168 YDALKAANED 177
+ ++
Sbjct: 254 DENDYPLKDE 263
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
+ +K Y Y ++ + S + + + + KP L+S
Sbjct: 353 AKISDSKPYKIEYFNRTKNISSIEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISF 412
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
++ +T+ DIILD F GSGT+ +
Sbjct: 413 LINQTTEKNDIILDFFAGSGTTAHAVLESN 442
>gi|9634640|ref|NP_038314.1| ORF13 [Streptococcus phage 7201]
gi|7248470|gb|AAF43506.1|AF145054_14 ORF13 [Streptococcus phage 7201]
Length = 250
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 85/229 (37%), Gaps = 14/229 (6%)
Query: 41 DLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
LI AD PYNL N P D S + + K D + C R+L
Sbjct: 23 QLIIADIPYNLGSNAYASDPRWYKDGSNENGESKLAGKSFFETDNDFKINNFFDFCARLL 82
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
K + M+ ++ ++ N + +
Sbjct: 83 KKE--------PKEKGQAPAMIVFHSWQQREMVIQCGKKHGFNNAYPLYFTKKTSPQVLK 134
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ K G T +A + + ++ + + ++ +HPTQKP +L R+
Sbjct: 135 ANMKIVGATE--EATVLYRDKLPKFNNNGAMVLNHMPWEKDSSYPTIHPTQKPIPVLKRL 192
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ T P D+++DP GSG++ A ++ R+ G E+K+++ A +
Sbjct: 193 IELFTDPEDVVIDPVAGSGSTIRAAVEMNRNAYGFEIKKEFYKKAQSEM 241
>gi|208434513|ref|YP_002266179.1| type III R-M system modification enzyme [Helicobacter pylori G27]
gi|208432442|gb|ACI27313.1| type III R-M system modification enzyme [Helicobacter pylori G27]
Length = 624
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 33/213 (15%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD----------- 66
+ II G+++ L+ L + + + +I+ DPPYN + PD+ D
Sbjct: 102 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGND-DFIYPDNFRQDYQKILREVGLM 160
Query: 67 AVTDSWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ ++ + S + +F L R +LK +G +++ +
Sbjct: 161 EIDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECT 220
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + RK+ N HE L+ + + + +
Sbjct: 221 NLKILCDEIFGERNFVADFIRKTKSTTNDAKMGVNYQHEFLLCYAKNKE---FVNLLGGE 277
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
K +D S ++ + + +
Sbjct: 278 KNLENYKNPDNDPNGAWISADPSAKSGNMKTGY 310
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 14/215 (6%)
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
N Q L + + +++ D ++ K
Sbjct: 255 NYQHEFLLCYAKNKEFVNLLGGEKNLENYKNPDNDPNGAWISADPSAKSGNMKTGYFGVT 314
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
N + + + L + + + ++ + Y +
Sbjct: 315 NPYTNKVDYPPVGRFWLFSQNTIQKHIDEGRICFKKKHKDNERGFIYK-----RYLKDLK 369
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDII 227
K + + + + + E L GE K + +I++ ST DII
Sbjct: 370 ITKKTFDSLIFSDNCYMNQAATKELLSLGIGE-YFTYPKGVEFMKKIILHSTSTNSDDII 428
Query: 228 LDPFFGSGTSGAVAK------KLRRSFIGIEMKQD 256
LD F GSGT+ K R FI +++ ++
Sbjct: 429 LDFFAGSGTTAHAVMELNAEDKGNREFILVQIDEE 463
>gi|109946717|ref|YP_663945.1| adenine specific DNA methyltransferase fragment 3 [Helicobacter
acinonychis str. Sheeba]
gi|109713938|emb|CAJ98946.1| adenine specific DNA methyltransferase fragment 3 [Helicobacter
acinonychis str. Sheeba]
Length = 71
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPTQK AL+ +I+ T P D++LDPF GSGT+G K L+R+FIG E++++Y
Sbjct: 5 ERVKHPTQKSLALMEKIISIHTNPNDLVLDPFMGSGTTGLTCKNLKRNFIGTELEKEYFQ 64
Query: 260 IATKRI 265
IA KR+
Sbjct: 65 IAKKRL 70
>gi|213417675|ref|ZP_03350802.1| Site-specific DNA-methyltransferase (adenine-specific) [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 421
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 18/162 (11%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
K+ +I+G+++ VL+ L V LI+ DPPYN + + +
Sbjct: 58 DWDNTKNLMIEGDNLEVLKLLQKSYTGKVKLIYIDPPYNTGKDFVYPDNFQDNMKNYLEI 117
Query: 72 WDK--------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ + + R +L +G +++ H + + ++
Sbjct: 118 TGQTEEGVRVSTNAETSGRYHTDWLNMMYPRIKLARNLLSDSGFIFISIDEHEVHNLCSL 177
Query: 118 LQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
++ +NP + AHE ++ + +
Sbjct: 178 CFEIFGEENFIALIANTNNPKGRSDDKFIATAHEYILVMTKN 219
>gi|124269005|ref|YP_001023009.1| DNA modification methylase-like protein [Methylibium petroleiphilum
PM1]
gi|124261780|gb|ABM96774.1| DNA modification methylase-like protein [Methylibium petroleiphilum
PM1]
Length = 227
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ DG +PTQKPEALL RI+ + T GD++ D F GSGT+ AVA+KL R +I ++ +
Sbjct: 126 SNDGSIGYPTQKPEALLERIVKACTNEGDLVADFFVGSGTTAAVAEKLGRKWIATDLGKF 185
Query: 257 YIDIATKRIASVQPLGNIELTVLT 280
+ KR+ VQ +EL +
Sbjct: 186 GVHTTRKRLIGVQRDLLMELVSVE 209
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAK----SV------DLIFADPPYNLQLNGQL 57
+ W +K+I G++ +L L A + LI+ DPP+++ + +
Sbjct: 19 LFDSRGRQTKGWSNKLIWGDNKLILSSLKAGPLRQQIEHAGGLKLIYIDPPFDVGADFSM 78
Query: 58 ----------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
+ A D+W + + ++ + L+ + +L +G++
Sbjct: 79 DVEIGGETFHKEANLLEQIAYRDTWGRGAD--SFISMLYERLVLMKDLLSNDGSI 131
>gi|117926107|ref|YP_866724.1| nuclease [Magnetococcus sp. MC-1]
gi|117609863|gb|ABK45318.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
Length = 448
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 45/265 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDL------IF--ADPPYNLQLNGQLY--RPDHSLVDAVT 69
+ +++ G+S++ P + L I DPPY + +G + + +++
Sbjct: 179 EHRLLCGSSLN-----PDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLN 233
Query: 70 DSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
W D E Y+ F RA + PN + + + + +
Sbjct: 234 KDWSDSYGVTWDDSSQGPELYEGFIRAAIDHAIE---PNAAWYCWHASKRQAMLEAVWEK 290
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + I+W K + + + N +
Sbjct: 291 MGAFQHQQIIWNKEKGVLTRSKYLW-----------KHEPCLMGWIKGNMPPKINGAEFL 339
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ W I SG ER HPT KP + + + G + +PF GSG+
Sbjct: 340 STVWDIRGLSGEERP-------DHPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMA 392
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
+ R +E+ Y+D+A KR
Sbjct: 393 GEMTGRRVHAMEISPVYVDVAVKRF 417
>gi|71275850|ref|ZP_00652134.1| methyltransferase [Xylella fastidiosa Dixon]
gi|71899346|ref|ZP_00681506.1| methyltransferase [Xylella fastidiosa Ann-1]
gi|71163428|gb|EAO13146.1| methyltransferase [Xylella fastidiosa Dixon]
gi|71730860|gb|EAO32931.1| methyltransferase [Xylella fastidiosa Ann-1]
Length = 316
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 11/183 (6%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
W + II+G++ L L ++ I+ DPPYN +Y D D ++
Sbjct: 61 WPNLIIEGDNFDALRALRMTHRGAIRCIYIDPPYNTGNRDFVY------NDCFVDKTHRY 114
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ F L + +L +G + V + +FR+G ++ + + ++
Sbjct: 115 R-HSLWLEFMYRRLQLAKELLADDGVISVSIDDNELFRLGMLMDRVFGEQNFVANFIWNH 173
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKG-YTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ AH + + + DA K N D R W+
Sbjct: 174 RKSSQNDTDVSLAHNYTLCYARTRDRFSLNPLPVDADKFNNTDGDQRGPWVADPFDAPNI 233
Query: 195 LRN 197
+N
Sbjct: 234 RKN 236
>gi|308183622|ref|YP_003927749.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori PeCan4]
gi|308065807|gb|ADO07699.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori PeCan4]
Length = 448
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 64/179 (35%), Gaps = 24/179 (13%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ + I + ++ +IKG+++ L+ L ++ + +I+ DPPYN + N +Y D
Sbjct: 74 KKNHKILKPLNESTSKHVLIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKSNNFIYGDD 133
Query: 62 HSLVDA--------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + S + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGLKSHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ ++ + + P + + HE ++ + K
Sbjct: 194 DNECAQLKLLCDEIFGERNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMI 252
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ Y + + ++ + + + E L+ D K+ KP +L+ ++
Sbjct: 345 SIRYCREGERIVMPTNEISKKDNVGTNETASKELLKLFDDNKIFNFNKPVSLIKYLISIC 404
Query: 221 ---TKPGDIILDPFFGSGTSGAVAKKLR 245
T GDIILD F GSGT+ +
Sbjct: 405 SNNTNEGDIILDFFAGSGTTAHAVLESN 432
>gi|15341560|gb|AAK95338.1| type III restriction-modification system methyltransferase
[Moraxella catarrhalis]
Length = 636
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/212 (11%), Positives = 57/212 (26%), Gaps = 25/212 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ VL+ L + +I+ DPPYN + +
Sbjct: 122 NIFIESDNLEVLKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKDYEIATGDRDM 181
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 182 NGQLLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 241
Query: 120 --NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ D +W + N HE ++ + K
Sbjct: 242 EIFGGENFVADFIWNNKYTVSND--TDVSYQHEHIVCFCKNRDIFELNLLPRTEKQNKSY 299
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D R+ ++ + P
Sbjct: 300 KNRDNDPNGAWKPTPIHARSGSLNNIYEIEFP 331
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 6/111 (5%)
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
++ ++ + + T+ + + + + +E G+ + K
Sbjct: 356 YQEALYFNKNGGVDRKTYLSEVRQGVTCGTLWSYEDVGHSHGNNEEFSEIIGKGIFNDPK 415
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
LL RI+ ++ IILD F GS T+ + R FI +++
Sbjct: 416 GTKLLKRIISLNSDKNSIILDFFAGSATTAHAVMQLNAEDNGNRQFIMVQL 466
>gi|308274185|emb|CBX30784.1| hypothetical protein N47_E42960 [uncultured Desulfobacterium sp.]
Length = 666
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/196 (11%), Positives = 54/196 (27%), Gaps = 23/196 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------QLYRPDHSLV 65
+ I+G+++ L+ L + +I+ DPPYN + L + +
Sbjct: 99 NLFIEGDNLDALKLLQETYLGKIKMIYIDPPYNTGNDFIYEDDFAESTEEYLRKSNQKDE 158
Query: 66 DA---VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ V ++ + + L R +L +G ++ I + ++ +
Sbjct: 159 EGNRLVANTESNGRFHSDWLSMMYPRLKLARNLLSDDGLIFASIGPEEISNLKKIMDEVF 218
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + + A E L+ S + + +
Sbjct: 219 GEANYRNSIAIKRGAKSVQAQFETWDKLGTAFEYLLLYSKISTYRFPKMVRELDDSKCGG 278
Query: 178 VQMRSDWLIPICSGSE 193
E
Sbjct: 279 WNNHWRGTDRPTMRYE 294
>gi|227548384|ref|ZP_03978433.1| DNA restriction-modification system, DNA methylase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079541|gb|EEI17504.1| DNA restriction-modification system, DNA methylase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 667
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E + G T KPE LL RI+ +T PGDI+LD F GSGT+ AVA+K+ R ++
Sbjct: 387 KELVSLFPGTTAFSTPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKMGRRWVTC 446
Query: 252 EMKQDYID-IATKRIASVQPLGNIELTVLTGKRTEP 286
E+ D + R+ V + T +R
Sbjct: 447 ELVDDTFNSFTRPRLEKVVLDNDPGGVTFTNEREPK 482
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 27/183 (14%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V I+ DPP+N Y +
Sbjct: 76 NLLILGESGDVLEALTRVPEFREKYLGKVKCIYIDPPFNTAQTFANYEDN---------- 125
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
+ R L+ R++L +G++WV Y R+ +L
Sbjct: 126 ----LEHSVWLTMMRDRLVHLRKLLSDDGSIWVHLDYAENHRMRLLLDEVFGSGNFLSEF 181
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFNYDALKAANEDVQMRSDWLIP 187
+ P F +T+I S + + +N D + W+
Sbjct: 182 VWQKADGPRNDPTYFSTDQDTIIAYRKSDNFSVNRLPRPDSMNTRFSNPDKDPKGPWVKG 241
Query: 188 ICS 190
Sbjct: 242 DPC 244
>gi|67924671|ref|ZP_00518079.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
gi|67853474|gb|EAM48825.1| DNA methylase N-4/N-6 [Crocosphaera watsonii WH 8501]
Length = 161
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + N + F + A K K + + N + W P R
Sbjct: 5 HGVKNTKSYTFNRDDIKI-EAKTGSKRKLIDYRRAIPQVYNSHKVPGNVWYFPRV----R 59
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
R ++ EK HPTQKPEALL RI ++S+ GD ILDPF G+ T+ AVA+KL R IGIE++
Sbjct: 60 YRMEEYEK-HPTQKPEALLKRITLASSNVGDTILDPFSGTFTTSAVAQKLGRKSIGIEIE 118
Query: 255 QDYIDIATKRIASVQPLGNIELTVL 279
+DYI I +R+ + I L
Sbjct: 119 EDYIKIGLRRLGISRYYNGIFLQKP 143
>gi|237756376|ref|ZP_04584922.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691457|gb|EEP60519.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 224
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/244 (15%), Positives = 71/244 (29%), Gaps = 46/244 (18%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ W K+ +S S +E++ +S+ LI PPY + V +
Sbjct: 1 MDNWI-KLYIADSRS-MEEVEDESISLIITSPPYWHIKDY-----------GVENQIGYG 47
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-----IFRIGTMLQNLNFWILNDIV 130
+ Y L C RVLKP L + R + + + +
Sbjct: 48 QTLHDYLKDLYRVWLECFRVLKPGRRLCINVGDQFARSVIYGRYKVIPIHSEIISQCEKI 107
Query: 131 WRKSNPMPNFRGRRFQNA---------------------HETLIWASPSPKAKGYTFNYD 169
++ + N +E ++ + +
Sbjct: 108 GFDYMGSIIWQKKTTINTTGGAVVMGSYPYPPNGLVEIDYEYILIFKKPGGKEKIAKDIK 167
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
++ + G E+ + H PE L R++ + G+ +LD
Sbjct: 168 EKSKLTKEEWKE-YFSGHWKFGGEK------QINHEAMFPEELPKRLIKMFSFVGETVLD 220
Query: 230 PFFG 233
PF G
Sbjct: 221 PFVG 224
>gi|284801429|ref|YP_003413294.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
monocytogenes 08-5578]
gi|284994571|ref|YP_003416339.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
monocytogenes 08-5923]
gi|284056991|gb|ADB67932.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
monocytogenes 08-5578]
gi|284060038|gb|ADB70977.1| site-specific DNA-methyltransferase (adenine- specific) [Listeria
monocytogenes 08-5923]
Length = 637
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 18/183 (9%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
N + + E + IIKGN++ L L + LI+ DPPYN + Y
Sbjct: 173 NGDVSFDKEKDNLIIKGNNLLALHTLKDMYSGMIKLIYIDPPYNTGKDSFRYN------- 225
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWI 125
DKF + + F + L + +L +G +W+ + +
Sbjct: 226 ------DKF-NHSTWMTFMKNRLEIAKELLSEDGCIWLNIDDDEGHYLKVLADGVFGREN 278
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+ V + + + + H+ L++ + + +
Sbjct: 279 FINNVIWEKKYTISNDAKYLSDNHDHLLFYAKDKNNWKPNPLPRTAEMNKAYKNPDNHPK 338
Query: 186 IPI 188
Sbjct: 339 GVW 341
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 47/88 (53%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
RSD + E +++ + E T KPE LL R+L + GDIILD F GS T+ A
Sbjct: 422 WRSDEVGHNHEAREEIKHLNLETDFTTPKPERLLQRVLTLGSLEGDIILDFFMGSATTQA 481
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
VA K++R FIGIE ++ R+
Sbjct: 482 VAMKMKRRFIGIEQMDYINSVSIPRLEK 509
>gi|240147216|ref|ZP_04745817.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis L1-82]
gi|257200622|gb|EEU98906.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis L1-82]
Length = 251
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/259 (16%), Positives = 79/259 (30%), Gaps = 62/259 (23%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D II +++ L +LP++SV+ PPY + + + + E
Sbjct: 4 DVIINRDALYALRELPSESVNCCVTSPPYYGLRDY-----------GLDAQIGQEDTPEQ 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHN-----------------IFRIGTMLQNLNF 123
Y RRVLK +GT W+ + + + L++ +
Sbjct: 53 YIDRLVEVFRELRRVLKDDGTFWLNIADTYCGTGMKAGCKQKDLIGIPWLLAFALRSDGW 112
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG----------------YTFN 167
++ +DI+W K NPMP R +E + + S K Y
Sbjct: 113 YLRSDIIWLKENPMPESCRDRPSRCYEHIFLLTKSKKYYYDAAAIAEPIAPGTAARYRQG 172
Query: 168 YDALKAANED-----------VQMRSDWLIPICSGSERLRNK-------DGEKLHPTQKP 209
A E+ + + R + + H P
Sbjct: 173 RGAGHKYAEEVPGQGKVQGINKTRSGGYYDDALMPTTRNKRDVWLINTVPYKGGHFAAYP 232
Query: 210 EALLSRILVSSTKPGDIIL 228
L +++ G ++L
Sbjct: 233 PKLAETCILAGCPAGGVVL 251
>gi|190890732|ref|YP_001977274.1| helicase/DNA methylase hybrid protein [Rhizobium etli CIAT 652]
gi|190696011|gb|ACE90096.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli CIAT
652]
Length = 1324
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL------HPTQKPEALLSRILVSSTKPGDIILD 229
V R+ W ++ + KL PT KPE LL RIL +T PGD+ILD
Sbjct: 1039 GGVVPRTWWPADEAGHNQEAKRDHLNKLLRGIEPFPTPKPERLLHRILTIATNPGDLILD 1098
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
F GSGT+GAVA K+ R +I +E+ + R+ V +
Sbjct: 1099 SFAGSGTTGAVAHKMGRRWIMVELGEHCHTHIIPRLKKVIDGEDD 1143
>gi|332982816|ref|YP_004464257.1| adenine-specific DNA-methyltransferase [Mahella australiensis 50-1
BON]
gi|332700494|gb|AEE97435.1| Site-specific DNA-methyltransferase (adenine-specific) [Mahella
australiensis 50-1 BON]
Length = 644
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 24/203 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD-HSLVD 66
++ ++ I G+++ L+ L V I+ DPPYN +G +Y + V+
Sbjct: 88 NSKPENMNSENIYISGDNLDGLKHLLKSYSRQVKCIYIDPPYNTGTDGFVYNDQFNFTVE 147
Query: 67 AVTDSWDKFS---------------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+++ S A+ F LL R +LK +G +++ +
Sbjct: 148 ELSEKLSISEEQAQRILDLTKRGSASHSAWLMFMYPRLLLARDLLKDDGVVFISIDDNEQ 207
Query: 112 FRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + ++ I WR+ + PN + + E ++ S + +
Sbjct: 208 ANLRLICDDVFGEENFEGHIHWRRRHNQPNDKTKLIGIVAEHILVYSRNCQYLKDVGVGK 267
Query: 170 ---ALKAANEDVQMRSDWLIPIC 189
+ +N D R DW
Sbjct: 268 VALTGEFSNPDNDPRGDWASKPW 290
Score = 42.7 bits (99), Expect = 0.097, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
P+ K + A + + ++ + E + KP L+ I+
Sbjct: 340 MPRKKYFKTERQAEGQCATNWWIHENYGSNQKASDELTELFGFKNAFSNPKPTQLIDAII 399
Query: 218 -VSSTKPGDIILDPFFGSGTSGAVAKK----LRRSFIGIEM 253
+++ K GDIILD F GS T+ A + + FI I++
Sbjct: 400 SLANVKDGDIILDFFSGSATTAHSALQFSLGYKCKFIMIQL 440
>gi|332674306|gb|AEE71123.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
Length = 459
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/190 (12%), Positives = 66/190 (34%), Gaps = 23/190 (12%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSND 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEVLKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ ++ + + + + H+ ++ +
Sbjct: 194 DNEAAQLKLLCDEIFGEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLCYQKNSINFKQIDI 253
Query: 168 YDALKAANED 177
+ + ++
Sbjct: 254 DENDYSLKDE 263
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 1/191 (0%)
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ D+SL D + + + D + + + + + G
Sbjct: 252 DIDENDYSLKDEFYNERGGYKLNQNLDYNSLQYNKKMDYEIVISNKKFYAGGLETYTERQ 311
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAA 174
W+ + + N N T + +K Y Y
Sbjct: 312 KGNFGTIDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIEYFNRTKN 371
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
++ + S + + + + KP L+S ++ +T+ DIILD F GS
Sbjct: 372 ISSIEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLINQTTEKNDIILDFFAGS 431
Query: 235 GTSGAVAKKLR 245
GT+ +
Sbjct: 432 GTTAHAVLESN 442
>gi|297380548|gb|ADI35435.1| Modification methylase [Helicobacter pylori v225d]
Length = 200
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 24/191 (12%)
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
LK G+ ++ + N L + LN I W K + N + R +A E+
Sbjct: 1 MLPKLKDTGSFYIFNTPFNCALFLAYLCHKKVHFLNFITWVKKDGFANAKKRY-NHAQES 59
Query: 152 LIWASPSPKAKGYT-----------------------FNYDALKAANEDVQMRSDWLIPI 188
+++ S K + N + W I
Sbjct: 60 ILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITS 119
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
E+ K + HP+ KP+AL+ R++ +S+ D+ILD F GSG + VAK L R+F
Sbjct: 120 QRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLGRNF 179
Query: 249 IGIEMKQDYID 259
IG E +Y+
Sbjct: 180 IGCETHAEYVH 190
>gi|153815967|ref|ZP_01968635.1| hypothetical protein RUMTOR_02212 [Ruminococcus torques ATCC 27756]
gi|317500727|ref|ZP_07958945.1| hypothetical protein HMPREF1026_00888 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089795|ref|ZP_08338688.1| hypothetical protein HMPREF1025_02271 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145846786|gb|EDK23704.1| hypothetical protein RUMTOR_02212 [Ruminococcus torques ATCC 27756]
gi|316897921|gb|EFV19974.1| hypothetical protein HMPREF1026_00888 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330403492|gb|EGG83050.1| hypothetical protein HMPREF1025_02271 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 629
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/218 (15%), Positives = 63/218 (28%), Gaps = 38/218 (17%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ I+G+++ VL+ L SV +I+ DPPYN + ++
Sbjct: 97 NLYIEGDNLDVLKLLQESYLDSVKVIYIDPPYNTGNDFIYADDFRIRAREYVNAGGASQD 156
Query: 78 ---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-L 121
+ + A LLA R +L +G +++ + + +
Sbjct: 157 DKNRMYQNLDYSGRYHSDWCSMIYARLLAARNLLCDDGVIFISIDDNEQANLKKICDEVF 216
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF--------------- 166
+ + R + HE ++ + + F
Sbjct: 217 GERNFVNCFIWNCSTAGGIRPKFASKTHEYILCYAKNKTCLDMFFAPLSGEAIKMYREKD 276
Query: 167 ----NYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
D + IC ER+R KDG
Sbjct: 277 ERGLYRDKDFVFKNKSTNANQKYEIICPDGERVRPKDG 314
Score = 43.1 bits (100), Expect = 0.068, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
DG+++ KP ++ + + K GDI++D F GS T+ +
Sbjct: 392 DGKRVFENVKPVNVIQYFINMAAKDGDIVMDFFSGSATTAHAVMQ 436
>gi|50843079|ref|YP_056306.1| putative type III restriction-modification system
[Propionibacterium acnes KPA171202]
gi|50840681|gb|AAT83348.1| putative type III restriction-modification system
[Propionibacterium acnes KPA171202]
Length = 663
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVS 219
T NE RS W + +++ G T KPE LL RI+
Sbjct: 349 TSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPERLLERIIHI 408
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE-MKQDYIDIATKRIASVQPLGN 273
+ PGDI+LD F GSGT+ AVA+K+ R ++ E ++ + R+ V +
Sbjct: 409 GSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQD 463
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 27/223 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
+ + A +E + + + +I G + + L ++P V LI+ DPP+N
Sbjct: 55 PKSDEFAYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA 114
Query: 53 LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
Y + + R L +++L +G++WV Y
Sbjct: 115 QTFASYEDN--------------LEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENH 160
Query: 113 RIGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY-- 168
R+ +L + + VW+K++ R + L +A+
Sbjct: 161 RMRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAA 220
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
D + +N D + W S + + Q P +
Sbjct: 221 DNARFSNPDGDSKGVWFSDNRSAPTNVMSWQHPSTFAIQHPIS 263
>gi|68535597|ref|YP_250302.1| putative DNA restriction-modification system, DNA methylase
[Corynebacterium jeikeium K411]
gi|68263196|emb|CAI36684.1| putative DNA restriction-modification system, DNA methylase
[Corynebacterium jeikeium K411]
Length = 614
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHP-------TQKPEALLSRILVSSTKPGDIIL 228
+ + R+ W ++ + K+ P T KPE LL RI+ +T PGDI+L
Sbjct: 311 QGLVPRTWWTADEVGHNQEAKRDHLNKMFPELEDTFATPKPERLLERIIHIATNPGDIVL 370
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEM-KQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
D F GSGT+ AVA+K+ R ++ E+ + + R+ + T R
Sbjct: 371 DVFAGSGTTAAVAQKMGRRWLSCELVEDTFRRFTRPRLEKAINDNDPGGVTFTKDREPK 429
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 33/181 (18%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V I+ DPP+N Y +
Sbjct: 76 NLLILGESGDVLEALTRVPELREKYLGKVKCIYIDPPFNTAQTFANYEDN---------- 125
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDI 129
+ R L+ R++L +G++WV R+ ++ + + ++
Sbjct: 126 ----LEHSVWLTMMRDRLIHLRKLLSADGSIWVHLDDVENHRMRVLMDEVFGAGSFVGEM 181
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSD 183
VW K N G N + ++ +P N + N D R
Sbjct: 182 VWEKDKGRRNDTGISGAN--DFILVYAPMGNQWKNARNLLPRLASQDARYQNPDNDPRGP 239
Query: 184 W 184
W
Sbjct: 240 W 240
>gi|196229823|ref|ZP_03128687.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
Ellin428]
gi|196226149|gb|EDY20655.1| DNA methylase N-4/N-6 domain protein [Chthoniobacter flavus
Ellin428]
Length = 1058
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 23/169 (13%)
Query: 18 EWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
+W +++I G+S+ V+ L A V +I+ DPPY ++ +
Sbjct: 185 DWSNRLILGDSLQVMTSLSRREALAGQVQMIYLDPPYGIKFSSNWQNEVGKRDVKEKDED 244
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ A D+W +Y + + LL R +L G+++V S N+ R+ +
Sbjct: 245 LSREPEMIRAYRDTW--TLGVHSYLTYLKQRLLLARELLTDTGSIFVQISDENLHRVRAV 302
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ + F N I + L+W + Y
Sbjct: 303 MDEV-FGPENFIGQIGVQKTGGLSADFLITTVDYLLWYAKERTRAKYRQ 350
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
L+ Q +L R ++ T PGD+++DP GSGT+ VA++ R +I I+ + + IA
Sbjct: 470 LYVVQTSSTILQRCMLMCTDPGDLVVDPTCGSGTTALVAEQWGRRWITIDSSRVALAIAR 529
Query: 263 KRI 265
+R+
Sbjct: 530 QRL 532
>gi|166367164|ref|YP_001659437.1| putative type III restriction-modification system, methylation
subunit [Microcystis aeruginosa NIES-843]
gi|166089537|dbj|BAG04245.1| putative type III restriction-modification system, methylation
subunit [Microcystis aeruginosa NIES-843]
Length = 360
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/268 (17%), Positives = 91/268 (33%), Gaps = 35/268 (13%)
Query: 17 FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQL---------YRPDH 62
+W +++I G+S+ + L V +I+ DPPY ++ D
Sbjct: 57 DKWVNRMILGDSLVTMNSLLQYEGMGGKVQMIYIDPPYGVKFGSNFQPFVRKRDVKHNDD 116
Query: 63 S-------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+V A D+W+ +Y ++ R LL R L +G+++V S N+ +
Sbjct: 117 DDFTREPEMVQAYRDTWELG--LHSYLSYLRNRLLLSREFLTDSGSVFVQISDENVHHVR 174
Query: 116 TMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
++ + K+ M + + +I+ + +
Sbjct: 175 ELMDEVFGGENFVANITYKTKKMTMGNTSTIETIGDHIIFYAKCIRNLKCH-----SLFT 229
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP-----GDIILD 229
+D + W ER E+ +P PE I + GD + +
Sbjct: 230 FKDWREDHHWRYIELPNGERRTMTTEERNNPDTIPEGSKVFIPLDLRPSGYFTTGDFVFE 289
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
F G+ S K R + G++ Y
Sbjct: 290 -FNGTKYSPGTGKSWRTNKEGMDNLAKY 316
>gi|222150484|ref|YP_002559637.1| type III restriction-modification system methyltransferase subunit
[Macrococcus caseolyticus JCSC5402]
gi|222119606|dbj|BAH16941.1| type III restriction-modification system methyltransferase subunit
[Macrococcus caseolyticus JCSC5402]
Length = 625
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 29/214 (13%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD- 66
++ ++ I G++I L+ L + I+ DPPYN +G PD+ +
Sbjct: 86 NSKEENRNSENLYIVGDNIDALKHLLNSYAGRIKCIYIDPPYNTGSDG-FVYPDNFQFNS 144
Query: 67 -------AVTDSWDK-------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+T+ K S+ A+ F LL R +L NG +++ +
Sbjct: 145 EELSNRIGITEEEAKRILDLAGKSTHSAWLTFMYPRLLLARDLLSKNGVIFISIDDNEQG 204
Query: 113 RIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS--------PKAK 162
+ + + + WR+ + PN R + E ++ + +
Sbjct: 205 NLRLICDEIFGEENFEGHVHWRRRSNQPNDRSKMIGLVAEHILIYAKNSLFLKEYGVGKI 264
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
G T N+ + W + R +
Sbjct: 265 GLTGNFSNPDNDPRGLWNSKPWKVGSDQSGSRYK 298
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 177 DVQMRSDWLIPICSGSERLRN--KDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFG 233
+ GS RL + + + L KP L+ IL +T D ILD F G
Sbjct: 354 NNWWNHTEFGSNQKGSARLTDLFEGNQNLFSKPKPTELIEGILNVTTTDDDFYILDFFSG 413
Query: 234 SGTSGAVAKKLR------RSFIGIEM 253
S T+ +L R ++ +++
Sbjct: 414 SATTADAVMQLNAEDQGKRKYLMVQL 439
>gi|187250641|ref|YP_001875123.1| DNA methylase [Elusimicrobium minutum Pei191]
gi|186970801|gb|ACC97786.1| DNA methylase [Elusimicrobium minutum Pei191]
Length = 656
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 52/163 (31%), Gaps = 24/163 (14%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ-------------LYRPDHSL 64
+ I+G ++ VL+ L + +I+ DPPYN + L +
Sbjct: 90 NVFIEGENLEVLKILQKSYFGKIKMIYIDPPYNTGNDNFIYPDKFAETKEEYLKKIKEKD 149
Query: 65 VDAV--------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ +S + + L + +LK +G ++V + + +
Sbjct: 150 EEGYLLKEGLFRKNSKENGQFHSNWLNMMYPRLFLAKNLLKDDGVIFVSIDDNEVHNLRL 209
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
++ + ++ + H+ ++ S +
Sbjct: 210 LMNEVFGEDNFKAIFPRVTKKGGKSSEATAKNHDYVLMYSKNN 252
Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 10/130 (7%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
G+ + KP L+S++ + +LD F GSGT+ +L R FI +++
Sbjct: 411 GKGIFEYTKPPELISQLAHLINEKDFFVLDFFAGSGTTAQAVMELNKEDGGKRKFICVQL 470
Query: 254 KQDYIDIAT-KR--IASVQPLGNIELTVLTGK-RTEPRVAFNLLVERGLIQPGQILTNAQ 309
+ + + R ++ + + K TE + + G + G +
Sbjct: 471 PEKTEETSEAFRAGYKTISEISAERIRRAIKKIETETKADNTMFKAEGKLDLGFKFYKLK 530
Query: 310 GNISATVCAD 319
+ T +D
Sbjct: 531 ESNFKTWRSD 540
>gi|265762622|ref|ZP_06091190.1| type III DNA modification enzyme [Bacteroides sp. 2_1_16]
gi|263255230|gb|EEZ26576.1| type III DNA modification enzyme [Bacteroides sp. 2_1_16]
Length = 659
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 19/185 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------ 55
E + + ++ I+G+++ ++ L VD+I+ DPPYN +
Sbjct: 89 EESRNWEQTQNLYIEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEE 148
Query: 56 ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ R + ++ + + A L+ R +L NG +++ H +
Sbjct: 149 SDEKQGRYNEEGQRLFQNTEANGKFHSDWCSMMYARLMLARTLLNDNGIIFISIDDHELA 208
Query: 113 RIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + N D+ P ++ + E ++ +
Sbjct: 209 NLIKIGNEVFNASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQGLKKES 268
Query: 172 KAANE 176
++N
Sbjct: 269 VSSNG 273
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 12/129 (9%)
Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+K+ KP +L+ + + I++D F GSGT+ ++ + K YI
Sbjct: 399 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPR--KNKVKYI 456
Query: 259 ------DIATKRIASVQPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQPGQILTNAQG 310
D+ + P + TE A N L + + + G +
Sbjct: 457 LVQLPEDVTETIKKAKTPSEKEIMQNAIDFLTENHKALNICELSKERIRRAGDTIEAECN 516
Query: 311 NISATVCAD 319
+ D
Sbjct: 517 QRKSKDLPD 525
>gi|294777969|ref|ZP_06743404.1| DNA (cytosine-5-)-methyltransferase [Bacteroides vulgatus PC510]
gi|294448178|gb|EFG16743.1| DNA (cytosine-5-)-methyltransferase [Bacteroides vulgatus PC510]
Length = 671
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 13/160 (8%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+G+++ L L +D+I+ DPPYN Y D D + F
Sbjct: 74 HILIEGDNLEALTALTYTHEGKIDVIYIDPPYNRGEKDFKYNDD------YVDKENPFR- 126
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ +F + L + +LK +G + V H + +L + ++ + +
Sbjct: 127 HSLWLSFMKKRLSIAKSLLKNDGVMIVHIDEHEFDAL-NILLETEIFTRDNCLGQIIWNK 185
Query: 138 PNFRGRRFQNA--HETLIWASPSPKAKGYTFNYDALKAAN 175
N +G A HE ++ + +A + N+ + N
Sbjct: 186 LNPKGDANAVAIQHEYILLYCKNKEAFNSSPNHLMREKPN 225
Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDY 257
K A+ +L + +IILD F GSGT+ +L R I + ++
Sbjct: 418 FEYPKTLAVAKYLLKNVLPNSEIILDFFAGSGTTLHATMQLNAEDSGHRKCILVTNNENN 477
Query: 258 I--DIATKR 264
I ++ KR
Sbjct: 478 ICEEVTYKR 486
>gi|167568214|ref|ZP_02361088.1| type III DNA modification methyltransferase [Burkholderia
oklahomensis C6786]
Length = 673
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 24/162 (14%)
Query: 18 EW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---------------- 55
+W ++ +I+G ++ VL+ L L++ DPPYN +
Sbjct: 97 DWASTRNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYPDNFTDSLRHYLEL 156
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
V + TD+ +F + + L R +L +G + V H +
Sbjct: 157 TGQTTGGKKVSSNTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALV 214
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+++ + V P R HE+++ +
Sbjct: 215 LVMREIFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 256
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V + P+P R
Sbjct: 312 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGRPCPVPERGWRNPPA 367
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ L+ T + +E+ + + GS+ K E
Sbjct: 368 TMQALLDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALLKSLEIPFDQP 426
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP + I+ T D+I+D F GSGT+ R + +++
Sbjct: 427 KPVEFAASIIGWCTDGNDLIVDFFGGSGTTAHAVMALNAADGGNRRYALVQL 478
>gi|167560955|ref|ZP_02353871.1| type III DNA modification methyltransferase [Burkholderia
oklahomensis EO147]
Length = 673
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 24/162 (14%)
Query: 18 EW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---------------- 55
+W ++ +I+G ++ VL+ L L++ DPPYN +
Sbjct: 97 DWASTRNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYPDNFTDSLRHYLEL 156
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
V + TD+ +F + + L R +L +G + V H +
Sbjct: 157 TGQTTGGKKVSSNTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALV 214
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+++ + V P R HE+++ +
Sbjct: 215 LVMREIFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 256
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V + P+P R
Sbjct: 312 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGRPCPVPERGWRNPPA 367
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ L+ T + +E+ + + GS+ K E
Sbjct: 368 TMQALLDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALLKSLEIPFDQP 426
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP + I+ T D+I+D F GSGT+ R + +++
Sbjct: 427 KPVEFAASIIGWCTDGNDLIVDFFGGSGTTAHAVMALNAADGGNRRYALVQL 478
>gi|126173814|ref|YP_001049963.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella baltica
OS155]
gi|125997019|gb|ABN61094.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica OS155]
Length = 570
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 24/169 (14%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
S+ N +N + + II+GN++ L L + LI+ DPPYN +
Sbjct: 171 SEVNEFDLNSDD-------NLIIRGNNLLALHSLKKKYAGKIKLIYIDPPYNTGSDSF-- 221
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
D++ + + F + L + +L P+G + + + ++
Sbjct: 222 --------GYNDNF----NHSTWLTFMKNRLSCAKELLSPDGFICCHIDDNESAYLRVLM 269
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + ++ N H+ + + ++ N
Sbjct: 270 DEVFGRDNFLTTFNIRVRYAEKTLKQDMNFHKEIEYVHIYQRSPASKPN 318
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
R + G +L +KPE L I+ + P DI+LD G G++ A A KL R FIGIE
Sbjct: 465 RTEGGVELRSGKKPEKFLKVIINHFSNPEDIVLDYHLGCGSTAATALKLGRKFIGIE 521
>gi|315453000|ref|YP_004073270.1| DNA modification methyltransferase [Helicobacter felis ATCC 49179]
gi|315132052|emb|CBY82680.1| DNA modification methyltransferase,XbaI methylase [Helicobacter
felis ATCC 49179]
Length = 271
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 45/80 (56%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+PTQKP LL R++ ST DIILDPF GSGT+ AK L R +IGI++ Q+ I
Sbjct: 89 KERVGYPTQKPIELLERLIQISTDENDIILDPFCGSGTTLVSAKLLHREYIGIDISQEAI 148
Query: 259 DIATKRIASVQPLGNIELTV 278
+ +R+ + L V
Sbjct: 149 HLTQQRLDKPCKTHSRLLKV 168
>gi|308271376|emb|CBX27984.1| hypothetical protein N47_G33080 [uncultured Desulfobacterium sp.]
Length = 1093
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 24/167 (14%)
Query: 18 EWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL-------- 64
W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 131 NWSNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNVD 190
Query: 65 --------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
V A D+W +Y + R L R +L +G+++V N+ R+
Sbjct: 191 HITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTESGSIFVQIGDENVHRVRA 248
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
++ + F N I + + +IW +
Sbjct: 249 LMDEV-FGDTNFISLIHFQTTTGQASDLLPRSGDYVIWYGKNRNNIK 294
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 11/253 (4%)
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
R + + + +Y+ A R++ K I
Sbjct: 286 YGKNRNNIKSKKLYAEK--NLADLASYNQARSLITFATRKLSKEERLGQKSIDNQWIIYS 343
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
L++ + + ++ + G L A N ++
Sbjct: 344 AQNLRSQDAGSEENRKFQLRGRTFDC-GPNHHWKTNPLPGIKRLEFADRLQINGNSPNYI 402
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ + +K + + ++ R ++ +T PGD++LDP GS
Sbjct: 403 RFINDYPVVEYTTQWNDTAIAGFSGDKKRYVVETSTKVIERCIIMTTDPGDLVLDPTCGS 462
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP-------LGNIELTVLTGKRTEPR 287
GT+ VA++ R +I I+ + + +A RI + + +L +T P
Sbjct: 463 GTTVYVAEQWGRRWITIDTSRVALALARARIMGARYSYYLLADSKDGQLKEAEITKTAPS 522
Query: 288 VAF-NLLVERGLI 299
A + +G +
Sbjct: 523 EALTQNNIRQGFV 535
>gi|117925345|ref|YP_865962.1| nuclease [Magnetococcus sp. MC-1]
gi|117609101|gb|ABK44556.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
Length = 448
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 45/265 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDL------IF--ADPPYNLQLNGQLY--RPDHSLVDAVT 69
+ +++ G+S++ P + L I DPPY + +G + + +++
Sbjct: 179 EHRLLCGSSLN-----PDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLN 233
Query: 70 DSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
W D E Y+ F RA + PN + + + + +
Sbjct: 234 KDWSDSYGVTWDDSSQGPELYEGFIRAAIDHAIE---PNAAWYCWHASKRQAMLEAVWEK 290
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + I+W K + + + N +
Sbjct: 291 MGAFQHQQIIWNKEKGVLTRSKYLW-----------KHEPCLMGWIKGNMPPKINGAEFL 339
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ W I SG ER HPT KP + + + G + +PF GSG+
Sbjct: 340 STVWDIRGLSGEERP-------DHPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMA 392
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
+ R +E+ Y+D+A KR
Sbjct: 393 GEMTGRRVHAMEISPVYVDVAVKRF 417
>gi|76810413|ref|YP_335021.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
1710b]
gi|254258911|ref|ZP_04949965.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
1710a]
gi|76579866|gb|ABA49341.1| Adenine specific DNA methylase Mod [Burkholderia pseudomallei
1710b]
gi|254217600|gb|EET06984.1| adenine specific DNA methylase Mod [Burkholderia pseudomallei
1710a]
Length = 567
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 51/176 (28%), Gaps = 20/176 (11%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L + V +F DPPYN +D
Sbjct: 44 FDNRLIFGDNLLALKALEQEFSGQVKCVFIDPPYNTGSAFV--------------HYDDG 89
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKS 134
+ R L R+L +G+LW+ + + + +
Sbjct: 90 LEHSIWLGLMRDRLELIVRLLADDGSLWITIDDNEAHYLKVLCDEIFGRGNFVANAVWQK 149
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ H+ ++ + + + N A + D
Sbjct: 150 KYTVANDAKWLAENHDHVLVYAK--NKELWRPNRLERTAEMDGRYRNPDGHPKGPW 203
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
E +++ + T KPE LL R++ +T PGD++LD F GSGT+GAVA K+ R +I +E
Sbjct: 298 EEVKSINSVDSFSTPKPEKLLKRVIDLATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVE 357
Query: 253 MKQDYIDIATKRIASVQPLGN 273
+ + R+ V +
Sbjct: 358 LGEHCHTHIIPRLKKVIDGED 378
>gi|146311899|ref|YP_001176973.1| DNA methylase N-4/N-6 domain-containing protein [Enterobacter sp.
638]
gi|145318775|gb|ABP60922.1| DNA methylase N-4/N-6 domain protein [Enterobacter sp. 638]
Length = 348
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + VL LPA SVDLI DPPY + + W Y
Sbjct: 12 LFNADCLQVLALLPADSVDLIITDPPYF-----------KVKPNGWDNQW---RGDVDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L+ RVLKPNG++++ H + +L F ILN I+W K + N
Sbjct: 58 EWLDKCLVEFWRVLKPNGSIYLFCG-HRLSADTELLMRNRFNILNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
H L+ S Y+ + K + + ++ G+ HP +K
Sbjct: 229 HHQLVATWKSLNR-KYSELLEEYKNLRRHFSVSVTVSYTDVWTHKPVQFYPGK--HPCEK 285
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P +L +I+ +S++PGD++ D F GSG++ A L R IG+E++ + + + +
Sbjct: 286 PADMLRQIINASSRPGDMVADFFMGSGSTVKAALDLGRRAIGVELEDERFNQTVSEVREL 345
Query: 269 Q 269
Sbjct: 346 A 346
>gi|60680597|ref|YP_210741.1| putative modification enzyme of type III restriction-modification
system [Bacteroides fragilis NCTC 9343]
gi|60492031|emb|CAH06793.1| putative modification enzyme of type III restriction-modification
system [Bacteroides fragilis NCTC 9343]
gi|301162140|emb|CBW21685.1| putative modification enzyme of type III restriction-modification
system [Bacteroides fragilis 638R]
Length = 664
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 19/185 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------ 55
E + + ++ I+G+++ ++ L VD+I+ DPPYN +
Sbjct: 94 EESRNWEQTQNLYIEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEE 153
Query: 56 ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ R + ++ + + A L+ R +L NG +++ H +
Sbjct: 154 SDEKQGRYNEEGQRLFQNTEANGKFHSDWCSMMYARLMLARTLLNDNGIIFISIDDHELA 213
Query: 113 RIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + N D+ P ++ + E ++ +
Sbjct: 214 NLIKIGNEVFNASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQGLKKES 273
Query: 172 KAANE 176
++N
Sbjct: 274 VSSNG 278
Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 12/129 (9%)
Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+K+ KP +L+ + + I++D F GSGT+ ++ + K YI
Sbjct: 404 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPR--KNKVKYI 461
Query: 259 ------DIATKRIASVQPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQPGQILTNAQG 310
D+ + P + TE A N L + + + G +
Sbjct: 462 LVQLPEDVTETIKKAKTPSEKEIMQNAIDFLTENHKALNICELSKERIRRAGDTIEAECN 521
Query: 311 NISATVCAD 319
+ D
Sbjct: 522 QRKSKDLPD 530
>gi|284112010|ref|ZP_06386548.1| type II DNA modification enzyme (methyltransferase) [Candidatus
Poribacteria sp. WGA-A3]
gi|283829725|gb|EFC34045.1| type II DNA modification enzyme (methyltransferase) [Candidatus
Poribacteria sp. WGA-A3]
Length = 457
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 37/227 (16%)
Query: 17 FEWKDK-IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW--- 72
+++ I +G+++ VL L A ++DLI+ DPP+N + + A DSW
Sbjct: 1 MNVENRTIFEGDNLYVLRGLDADTIDLIYLDPPFNSNRTFEASIESKAAGAAFKDSWTPN 60
Query: 73 --------------------------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
S +AY +L R+LKP GTL++
Sbjct: 61 DLDSAWHGELSEKVPNLYHAISTAEFTHGKSMKAYLIMMGIRMLEMYRILKPTGTLYLHC 120
Query: 107 SYHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ + M+ + N+IVW+++ + + ++ + + +
Sbjct: 121 DDNASHYLKMMMDGIFGRENFRNEIVWQRAVTSKGNLKKGLARDSDLILRYAK---SNDF 177
Query: 165 TFNYDA--LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+N DA + ED+ ++ R TQ P
Sbjct: 178 VWNPDAVTIPYDMEDLDEKTKRQYYYVEPGTRRLVSHTSITAQTQDP 224
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D Q +PTQKP ALL RI+ +S+ PGD++LDPF G T
Sbjct: 271 DEQKGKTLNNIWVDIPNLTARNKERIGYPTQKPIALLERIICASSNPGDMVLDPFCGCAT 330
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ A++L+R +IGI++ + +A R+
Sbjct: 331 TCIAAERLQRHWIGIDLSPESSKLAKLRLEQH 362
>gi|253563533|ref|ZP_04840990.1| type III DNA modification enzyme [Bacteroides sp. 3_2_5]
gi|251947309|gb|EES87591.1| type III DNA modification enzyme [Bacteroides sp. 3_2_5]
Length = 664
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 19/185 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------ 55
E + + ++ I+G+++ ++ L VD+I+ DPPYN +
Sbjct: 94 EESRNWEQTQNLYIEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEE 153
Query: 56 ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ R + ++ + + A L+ R +L NG +++ H +
Sbjct: 154 SDEKQGRYNEEGQRLFQNTEANGKFHSDWCSMMYARLMLARTLLNDNGIIFISIDDHELA 213
Query: 113 RIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + N D+ P ++ + E ++ +
Sbjct: 214 NLIKIGNEVFNASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQGLKKES 273
Query: 172 KAANE 176
++N
Sbjct: 274 VSSNG 278
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 12/129 (9%)
Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+K+ KP +L+ + + I++D F GSGT+ ++ + K YI
Sbjct: 404 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPR--KNKVKYI 461
Query: 259 ------DIATKRIASVQPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQPGQILTNAQG 310
D+ + P + TE A N L + + + G +
Sbjct: 462 LVQLPEDVTETIKKAKTPSEKEIMQNAIDFLTENHKALNICELSKERIRRAGDTIEAECN 521
Query: 311 NISATVCAD 319
+ D
Sbjct: 522 QRKSKDLPD 530
>gi|254298624|ref|ZP_04966075.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 406e]
gi|157808512|gb|EDO85682.1| type III DNA modification methyltransferase [Burkholderia
pseudomallei 406e]
Length = 677
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------------QLYRP 60
++ +I+G ++ VL+ L V L++ DPPYN +
Sbjct: 107 RNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT 166
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
V + D+ +F + + L R +L +G + V H + +++
Sbjct: 167 GGKRVTSHADASGRFHT--DWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMRE 224
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 225 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 261
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 317 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 372
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
LI T + +E+ + + GS+ K
Sbjct: 373 TMRALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 431
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP + I+ T D+I+D F GSGT+ L R ++ +++
Sbjct: 432 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQL 483
>gi|254169291|ref|ZP_04876123.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
gi|289596730|ref|YP_003483426.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
gi|197621768|gb|EDY34351.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
gi|289534517|gb|ADD08864.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
Length = 849
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/267 (19%), Positives = 89/267 (33%), Gaps = 38/267 (14%)
Query: 22 KIIKGNSISVLEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
KII G+S VL +L + +++ PPY K+ +
Sbjct: 593 KIIVGDSYKVL-ELFKNKITNMV-TSPPYYNAREYS-----------------KWDNLFN 633
Query: 81 YDAFTRAWLLACRRVLKPNGTLWV----IGSYHNIF------RIGTMLQNLNFWILNDIV 130
Y +L L G + I NI L I
Sbjct: 634 YLNDIYNIILKAHDALIKGGVFFYNIGDIFDNENIIVKSKMGEKRIPLGAYTILIFEKAG 693
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ + + ++G N H+ +P + + + + DV + D
Sbjct: 694 FELLDDIIWYKGEPQSNRHKNDGMYTPYYQRPTNCYEHMFIFKKEGDVIINKDKDEIKIK 753
Query: 191 GS--------ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + + + H P+ + + + T GDI+LDPF GSGT+ VA
Sbjct: 754 SNIIKFAPVVKIGKGGENRYGHTAPFPKMIPLLSISTFTNQGDIVLDPFSGSGTTPIVAS 813
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQ 269
R IGIE+ ++Y ++ K+
Sbjct: 814 INGRKAIGIEINKEYALLSIKKAKDEN 840
>gi|53712435|ref|YP_098427.1| type III DNA modification enzyme [Bacteroides fragilis YCH46]
gi|52215300|dbj|BAD47893.1| type III DNA modification enzyme [Bacteroides fragilis YCH46]
Length = 668
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 19/185 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------ 55
E + + ++ I+G+++ ++ L VD+I+ DPPYN +
Sbjct: 98 EESRNWEQTQNLYIEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEE 157
Query: 56 ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ R + ++ + + A L+ R +L NG +++ H +
Sbjct: 158 SDEKQGRYNEEGQRLFQNTEANGKFHSDWCSMMYARLMLARTLLNDNGIIFISIDDHELA 217
Query: 113 RIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + N D+ P ++ + E ++ +
Sbjct: 218 NLIKIGNEVFNASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQGLKKES 277
Query: 172 KAANE 176
++N
Sbjct: 278 VSSNG 282
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 12/129 (9%)
Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+K+ KP +L+ + + I++D F GSGT+ ++ + K YI
Sbjct: 408 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPR--KNKVKYI 465
Query: 259 ------DIATKRIASVQPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQPGQILTNAQG 310
D+ + P + TE A N L + + + G +
Sbjct: 466 LVQLPEDVTETIKKAKTPSEKEIMQNAIDFLTENHKALNICELSKERIRRAGDTIEAECN 525
Query: 311 NISATVCAD 319
D
Sbjct: 526 QRKLKDLPD 534
>gi|219856208|ref|YP_002473330.1| hypothetical protein CKR_2865 [Clostridium kluyveri NBRC 12016]
gi|219569932|dbj|BAH07916.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 659
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 64/196 (32%), Gaps = 19/196 (9%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-HSLVD 66
++ ++ I G+++ L+ L V I+ DPPYN +G +Y + V+
Sbjct: 88 NSKPENMNSENIYISGDNLDGLKHLLKSYSGQVKCIYIDPPYNTGTDGFVYNDQFNFTVE 147
Query: 67 AVTDSWDKFS---------------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+++ S A+ F + LL R +L +G +++ +
Sbjct: 148 ELSEKLSISEEQAQRILDLTKRGSASHSAWLMFMYSRLLLARDLLTDDGVIFISIDDNEC 207
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + ++ + + H+ ++ S + + ++
Sbjct: 208 HNLKLLCDDVFGEENFIAEFPRITKRGGKSSEIIAKNHDYVLMYSKTNAPLLFPIAHNDS 267
Query: 172 KAANEDVQMRSDWLIP 187
++D
Sbjct: 268 AFKHKDEFFEERGYYK 283
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 14/186 (7%)
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD+ + + ++ +G ++ GS ++ + K
Sbjct: 289 DYDSLQYS--KSLDYPIEIDGEVFYPGSSLELYNERQSGIHDTADWAWRWSKAKFEFGYK 346
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR------SDWLIPICSGSE 193
+ + + + + N D D +D + + ++
Sbjct: 347 NGFIVVKRSKNGSRLYTKTYQKATIEENDDGYYIEYGDRTKCLSTLETTDNMYSNDNATK 406
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RS 247
+ G+K+ KP AL++ + ST+ DIILD F GS + KL R
Sbjct: 407 DVALTIGKKIFNHTKPLALMTLLAKLSTQDSDIILDFFSGSAATAEAIMKLNCDENTRRK 466
Query: 248 FIGIEM 253
+I +++
Sbjct: 467 YIMVQL 472
>gi|307256862|ref|ZP_07538640.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306864596|gb|EFM96501.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
Length = 656
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 22/166 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD- 73
+ I+G ++ VL+ L S+ +I+ DPPYN + + + + A T
Sbjct: 108 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTGEIGE 167
Query: 74 --------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ L R +LK +G +++ + ++ +
Sbjct: 168 DGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLKLLCD 227
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ +G HE ++ + +
Sbjct: 228 EVFGEENFVAELIWDKQHSQQQGLFKTY-HEYVLLYAKNINNHKNI 272
Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 408 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 458
>gi|213619015|ref|ZP_03372841.1| putative methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 84
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 14/83 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KII G++++ L+KLP++S+DLIFADPPYN+ + D + +SWD+ ++
Sbjct: 16 KIIHGDALTELKKLPSESIDLIFADPPYNIGKD----------FDGMVESWDE----ASF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWV 104
A+ + C RVLK +GT+++
Sbjct: 62 LAWLYECIDECHRVLKKHGTMYI 84
>gi|153955848|ref|YP_001396613.1| Type III restriction-modification system, modification subunit
[Clostridium kluyveri DSM 555]
gi|146348706|gb|EDK35242.1| Type III restriction-modification system, modification subunit
[Clostridium kluyveri DSM 555]
Length = 656
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 64/196 (32%), Gaps = 19/196 (9%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD-HSLVD 66
++ ++ I G+++ L+ L V I+ DPPYN +G +Y + V+
Sbjct: 85 NSKPENMNSENIYISGDNLDGLKHLLKSYSGQVKCIYIDPPYNTGTDGFVYNDQFNFTVE 144
Query: 67 AVTDSWDKFS---------------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+++ S A+ F + LL R +L +G +++ +
Sbjct: 145 ELSEKLSISEEQAQRILDLTKRGSASHSAWLMFMYSRLLLARDLLTDDGVIFISIDDNEC 204
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + ++ + + H+ ++ S + + ++
Sbjct: 205 HNLKLLCDDVFGEENFIAEFPRITKRGGKSSEIIAKNHDYVLMYSKTNAPLLFPIAHNDS 264
Query: 172 KAANEDVQMRSDWLIP 187
++D
Sbjct: 265 AFKHKDEFFEERGYYK 280
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 14/186 (7%)
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD+ + + ++ +G ++ GS ++ + K
Sbjct: 286 DYDSLQYS--KSLDYPIEIDGEVFYPGSSLELYNERQSGIHDTADWAWRWSKAKFEFGYK 343
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR------SDWLIPICSGSE 193
+ + + + + N D D +D + + ++
Sbjct: 344 NGFIVVKRSKNGSRLYTKTYQKATIEENDDGYYIEYGDRTKCLSTLETTDNMYSNDNATK 403
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RS 247
+ G+K+ KP AL++ + ST+ DIILD F GS + KL R
Sbjct: 404 DVALTIGKKIFNHTKPLALMTLLAKLSTQDSDIILDFFSGSAATAEAIMKLNCDENTRRK 463
Query: 248 FIGIEM 253
+I +++
Sbjct: 464 YIMVQL 469
>gi|153818467|ref|ZP_01971134.1| DNA methylase [Vibrio cholerae NCTC 8457]
gi|126511026|gb|EAZ73620.1| DNA methylase [Vibrio cholerae NCTC 8457]
Length = 351
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
Q+++ + + +I + ++ L+KL SVDLI DPPY A + W
Sbjct: 3 QHTLHDGRATLIHADCLTYLKKLEDNSVDLILTDPPYF-----------QVKRQAWDNQW 51
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+SF A+ LL RVLKP+G+L++ +++N + I +
Sbjct: 52 PDVTSF---LAWLDEVLLEFWRVLKPSGSLYLFCGSKLASDTELLIRNRFEMFNHIIWAK 108
Query: 133 KSNPMPNFRG 142
S P
Sbjct: 109 PSGPWRRMHK 118
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP+ LL I+ +S++ D++LD F GSG++G L R FIGIEM+++ + A
Sbjct: 285 HPCEKPQDLLQHIIAASSRENDVVLDAFMGSGSTGKACLSLNRRFIGIEMEEETFEQALA 344
Query: 264 RIASVQ 269
I +++
Sbjct: 345 SIKNIK 350
>gi|68249856|ref|YP_248968.1| modification methylase DpnIIB-like [Haemophilus influenzae
86-028NP]
gi|145629790|ref|ZP_01785584.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
22.1-21]
gi|229844468|ref|ZP_04464608.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
6P18H1]
gi|68058055|gb|AAX88308.1| modification methylase DpnIIB-like [Haemophilus influenzae
86-028NP]
gi|144977936|gb|EDJ87724.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
22.1-21]
gi|229812717|gb|EEP48406.1| modification methylase DpnIIB-like protein [Haemophilus influenzae
6P18H1]
Length = 245
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 30/240 (12%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL N G + ++ DK + F
Sbjct: 20 KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ I + + F +V+ KS+ +
Sbjct: 80 MLIKEPKERGKAPCMIVFCAFQQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANM--- 136
Query: 148 AHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A Y D L N + +M + E+ K+ KLHP
Sbjct: 137 ---------KVVGATEYALILYRDKLPKFNNNGKMIKN-----WFEWEKDNRKEIPKLHP 182
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKP A+L R++ T GD+++DP GS ++ A++L R G E+K+D IA +++
Sbjct: 183 TQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEKM 242
>gi|167757963|ref|ZP_02430090.1| hypothetical protein CLOSCI_00299 [Clostridium scindens ATCC 35704]
gi|167664395|gb|EDS08525.1| hypothetical protein CLOSCI_00299 [Clostridium scindens ATCC 35704]
Length = 281
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 20/242 (8%)
Query: 41 DLIFADPPYNLQLNGQ----LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
L+ AD PYN+ N ++ + + K + ++ + C ++L
Sbjct: 25 QLVIADVPYNVGNNFYGSNPMWYNGGDNRNGESRLAGKAAFNSDFNFNLYEYFHFCSKML 84
Query: 97 KPN-------------GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
K + + V S+ I + + F + + +
Sbjct: 85 KRDDKKPVRRGRSSDSPCMIVFCSFEQIQTLIKAAEKHGFVH---YIPLVFCKNYSPQVL 141
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+ + + +K+ + + KD K+
Sbjct: 142 KANMRIVGATEYALLLYRDRLPKFRNGVKSDENGKTIPGTGHMVFNWFMWERDGKDVPKI 201
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP QK +L +++ + T PGD+++DP GSG + A +L R+ G E+ + + A
Sbjct: 202 HPAQKSVKVLKKLIETFTDPGDVVIDPCCGSGATLRAAHELGRNAFGFEIDRTFYRRAKN 261
Query: 264 RI 265
+
Sbjct: 262 EM 263
>gi|308062650|gb|ADO04538.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
Cuz20]
Length = 202
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 24/191 (12%)
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
LK G+ ++ + N L + LN I W K + N + R +A E+
Sbjct: 1 MLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFANAKKRY-NHAQES 59
Query: 152 LIWASPSPKAKGYT-----------------------FNYDALKAANEDVQMRSDWLIPI 188
+++ S K + N + W I
Sbjct: 60 ILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITS 119
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
E+ K + HP+ KP+AL+ R++ +S+ D+ILD F GSG + VAK L R+F
Sbjct: 120 QRHVEKENGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLGRNF 179
Query: 249 IGIEMKQDYID 259
IG E +Y+
Sbjct: 180 IGCETHAEYVH 190
>gi|268599185|ref|ZP_06133352.1| LOW QUALITY PROTEIN: twin-arginine leader-binding protein DmsD
[Neisseria gonorrhoeae MS11]
gi|268583316|gb|EEZ47992.1| LOW QUALITY PROTEIN: twin-arginine leader-binding protein DmsD
[Neisseria gonorrhoeae MS11]
Length = 601
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 19/147 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ L L V LI+ DPPYN + +
Sbjct: 75 KQPVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTETDSF---- 130
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
A D + S + F + L + +LK +G ++V + +L
Sbjct: 131 ------AYNDKF----SHSTWLTFMKNRLEIAKELLKDDGLIFVQCDDKEQAYLKVLLDE 180
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ + + M G + +
Sbjct: 181 TF--TRENFINCIAVKMSEPSGNKMAH 205
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 380 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNENDIVLDYHLGSGT 431
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 432 TAAVAHKMNRQYIGIEQMDYIETLAVERMKK 462
>gi|257462692|ref|ZP_05627101.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D12]
Length = 260
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 28/248 (11%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LI AD PYNL G + + D + F
Sbjct: 25 KAQLIIADIPYNLGNNAYASSPEWYIGGDNKNGESKKANKSFFDTDHNFKIAEFFHFCSK 84
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L + + V ++ + +V+ K++ +
Sbjct: 85 MLKPEPKEKNQAPCMIVFCAFQQFQTVIDYAAKYGIKKYIPLVFIKNSSPQVLKANMRVV 144
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
K + N +I E+ + + EK+HPTQ
Sbjct: 145 GACEYALVLYRDKLPKFRNNKK---------------MIKNWFEWEKDKKGEVEKIHPTQ 189
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KP+ +L +++ T GD+++DP GSG++ AK L+R+ G E+K+D +A +
Sbjct: 190 KPQRVLKKLIEIFTDEGDVVIDPVAGSGSTLRAAKDLKRNSYGFEIKKDMYQLALE--KV 247
Query: 268 VQPLGNIE 275
+ P ++E
Sbjct: 248 INPQKDVE 255
>gi|167724489|ref|ZP_02407725.1| DNA modification methylase RsrI [Burkholderia pseudomallei DM98]
Length = 539
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + LP S+DLI ADPPY L + + DK S + +
Sbjct: 31 LHNRDFLHEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 76
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK G+++V ++ I + L ++N+I+W + P
Sbjct: 77 AWTREWLELAVPKLKSTGSMYVFCTWQYAPEIFSFL-KTKLTMVNEIIWDRRVPSMGGTT 135
Query: 143 RRFQNAHETLIWAS 156
RRF + H+ + + +
Sbjct: 136 RRFTSVHDNIGFFA 149
>gi|254415251|ref|ZP_05029013.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
gi|196178057|gb|EDX73059.1| DNA methylase [Microcoleus chthonoplastes PCC 7420]
Length = 299
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/295 (18%), Positives = 95/295 (32%), Gaps = 52/295 (17%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLY---------------------RPDHSLVDAVTD 70
+ ++ SV L F PPY + + + +P LV + D
Sbjct: 1 MLEIEPNSVALSFWSPPYFVGKDYEKEETFESWQSLLRQVIHNHYQILKPGGFLVINIAD 60
Query: 71 SW---DKFSS-------------------------FEAYDAFTRAWLLACRRVLKP---N 99
DK+ Y+ + A LL C N
Sbjct: 61 ILCFKDKYMPRIQALNISNQKCKVTREMVLEARQKHPDYNRYELASLLGCSEQTIDRRLN 120
Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
G G Y R+ + + + ++ + + + + +
Sbjct: 121 GNNIRGGKYQVQTRVKLVGNYIEKYAYEVGIYLYDKRVWVKDPSWVNSQWTSNTLKAVNE 180
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
Y F + + +W G + + H + PE L SR++
Sbjct: 181 YEDLYIFWKPGEYVIDRRKLSKDEWKSWGSRGLWYINSVRVNDDHEAKFPEELASRVIRL 240
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
++ D+ILDPF GSGT+ A K R++IGIE + Y+ +A KRI +
Sbjct: 241 FSEENDLILDPFMGSGTTAVAAIKHNRNYIGIEKEAKYVKLAKKRIRELSSFQLE 295
>gi|148827567|ref|YP_001292320.1| hypothetical protein CGSHiGG_04970 [Haemophilus influenzae PittGG]
gi|148718809|gb|ABQ99936.1| hypothetical protein CGSHiGG_04970 [Haemophilus influenzae PittGG]
Length = 243
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 87/236 (36%), Gaps = 30/236 (12%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL N G + ++ DK + F
Sbjct: 20 KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ I + + F +V+ KS+ +
Sbjct: 80 MLIKEPKERGKAPCMIVFCAFQQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANM--- 136
Query: 148 AHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A Y D L N + +M + E+ K+ KLHP
Sbjct: 137 ---------KVVGATEYALILYRDKLPKFNNNGKMIKN-----WFEWEKDNRKEIPKLHP 182
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
TQKP A+L R++ T GD+++DP GS ++ A++L R G E+K+D IA
Sbjct: 183 TQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIA 238
>gi|121611088|ref|YP_998895.1| DNA methylase N-4/N-6 domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121555728|gb|ABM59877.1| DNA methylase N-4/N-6 domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 972
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 27/184 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W +++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 164 WANRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAQH 223
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L R +L +G+++V N+ R+ T+
Sbjct: 224 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTESGSIFVQIGEENVHRVRTV 281
Query: 118 LQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNA--HETLIWASPSPKAKGYTFNYDALKA 173
L + ++ I ++ + + G A + ++W + + A Y Y
Sbjct: 282 LDEVFGDANFVSQINFKTTGGAGSPTGGTETLASVNNFILWYAKNGAAIKYRQPYRVKGD 341
Query: 174 ANED 177
+
Sbjct: 342 LSGG 345
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + +KL+ Q ++ R ++ +T PGD++LDP GSGT+ A+
Sbjct: 444 VYPMNNSWDDTVTAGFASDKLYVVQTNPKVIERCILMTTDPGDLVLDPTCGSGTTAYAAE 503
Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
+ R +I I+ + + +A RI
Sbjct: 504 QWGRRWITIDTSRVALALARARI 526
>gi|261492361|ref|ZP_05988922.1| methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261494471|ref|ZP_05990957.1| methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261309855|gb|EEY11072.1| methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311965|gb|EEY13107.1| methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 610
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/307 (12%), Positives = 89/307 (28%), Gaps = 26/307 (8%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---- 54
+ K E ++ I+G ++ VL+ L SV +I+ DPPYN +
Sbjct: 18 TSKTLTPCEEESVDFENTQNIFIEGENLDVLKALQKSYFNSVKMIYIDPPYNTGNDFIYN 77
Query: 55 --------------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
G + V +S + + L + +L+ +G
Sbjct: 78 DSFADTKADYAEKVGDVDEHGKLKRAFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDG 137
Query: 101 TLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+++ + ++ + I+ ++NP + +++ I + +
Sbjct: 138 VIFISIDDNEQAQLKLLCDEVFGEENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNK 197
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
+ + N +D+ + SG L ++ T +
Sbjct: 198 EMGKFVENIPKNA---KDMCQDENGHYVHASGKRVLVGENKFNQPVTDFTSD-KHYSVYF 253
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
+ DIIL ++++ R ++ + L
Sbjct: 254 NKLDDDIILKFEDSLDDKDLNLINQGYVRYISFFDDEFVENTYTRFKFLELFEDESLEFT 313
Query: 280 TGKRTEP 286
K E
Sbjct: 314 EDKIYEK 320
>gi|315587231|gb|ADU41612.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
Length = 95
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y IA K
Sbjct: 31 HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90
Query: 264 RIA 266
R+
Sbjct: 91 RLN 93
>gi|220934219|ref|YP_002513118.1| DNA methylase N-4/N-6 domain-containing protein [Thioalkalivibrio
sp. HL-EbGR7]
gi|219995529|gb|ACL72131.1| DNA methylase N-4/N-6 domain-containing protein [Thioalkalivibrio
sp. HL-EbGR7]
Length = 330
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/267 (19%), Positives = 88/267 (32%), Gaps = 42/267 (15%)
Query: 37 AKSVDLIFADPPYNLQLNG----------------------QLYRPDHSLVDAVTDSWDK 74
V+LIF PP+ L ++ PD S+V + +SW+
Sbjct: 56 EGKVNLIFTSPPFPLNRKKRYGNETGESYIRWLCTFGPLFKKMLTPDGSIVIEMGNSWEP 115
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S + A K + L + N ++ + Q +N +
Sbjct: 116 GSPVMSTLALR----ALLEFQSKNDLYLCQEFIWQNPAKLPSPAQWVNVERIRVKDSFTK 171
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPK------------AKGYTFNYDALKAANEDVQMRS 182
+ + + L S S K + N + S
Sbjct: 172 LWWLSPNEKPKASNQRVLQEYSKSMKDLLKKGSYNAGKRPSEHDIGETSFLKNNGGAIPS 231
Query: 183 DW----LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + + +LHP + P L + T+PGDI+LDPF GS T+G
Sbjct: 232 NVLTYANTLASDAYQTYCRNNQFQLHPARMPSDLAKFFIKFLTEPGDIVLDPFGGSNTTG 291
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
A+ L R +I IE ++YI + R
Sbjct: 292 CAAENLERFWISIEASEEYIKGSRGRF 318
>gi|145632421|ref|ZP_01788156.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
3655]
gi|115289034|gb|ABI85525.1| M.Hin1056ModP-7B [Haemophilus influenzae]
gi|144987328|gb|EDJ93858.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
3655]
Length = 687
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 90/258 (34%), Gaps = 41/258 (15%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + + ++ IIKGN++ L L + LI+ DPPYN + Y
Sbjct: 186 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGEDSFKYN- 244
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF S + F + L + +L +G ++V Y+ + +L
Sbjct: 245 ------------DKF-SHSTWLTFMKNRLEIAKTLLADDGVIFVHCDYNEDGYLRVLLDE 291
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ ++ V + + G + Q+ +T++ + + +
Sbjct: 292 IFTE--DNFVANIAIRSNSISGNKTQHKEKTILKNKDTILVYKKNSLKINPQYTIKQKWD 349
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGA 239
I I E KP+ LL ++ + KP + I + +G+
Sbjct: 350 THYNAILISEDGE-------------LKPKKLLDHLIENKILKPNEKITENSWGN----- 391
Query: 240 VAKKLRRSFIGIEMKQDY 257
+ R+F M Y
Sbjct: 392 ---EKFRNFCIENMNFIY 406
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ +N+ G +KPEALL RI+ +TK GDIILD GSGT+ AVA K+ R +IGIE
Sbjct: 474 QNTQNEGGVSFPTGKKPEALLRRIIDMTTKEGDIILDYHLGSGTTAAVAHKMNRQYIGIE 533
Query: 253 MKQDYIDIATKRIAS 267
+A +R+
Sbjct: 534 QMDYIETLAVERLKK 548
>gi|195661243|ref|YP_002117711.1| DNA methylase [Lactobacillus phage Lrm1]
gi|166200957|gb|ABY84344.1| DNA methylase [Lactobacillus phage Lrm1]
Length = 252
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 28/238 (11%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYN+ G S D + F
Sbjct: 23 KAQLVIADIPYNIGNNAYGSNPTWYVGGNDKNGTSSKAGKTFFDTDVDFRVAEFMHFCSH 82
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ + + + F +++ K+ +
Sbjct: 83 MLVKEPKERGKAPAMIVFCAFQQMQMVIEYGEKYGFQHSFPLIFIKNQSAQALKANMR-- 140
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
++ A+ D L N D QM +W + K+HPTQ
Sbjct: 141 ----IVGAT----EYAVVLYRDKLPKFNNDGQMVFNWFRWDT-------DSTYPKIHPTQ 185
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KP +L R++ T GD+++DP GSG++ A +L RS G E+K+D +A +++
Sbjct: 186 KPIPVLKRLIELFTDQGDVVIDPCAGSGSTLRAAAELGRSCFGFEIKKDMYRLAKEKM 243
>gi|199598945|ref|ZP_03212354.1| modification methylase DpnIIB-like protein [Lactobacillus rhamnosus
HN001]
gi|199590145|gb|EDY98242.1| modification methylase DpnIIB-like protein [Lactobacillus rhamnosus
HN001]
Length = 251
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/238 (20%), Positives = 83/238 (34%), Gaps = 28/238 (11%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYN+ G S D + F
Sbjct: 22 KAQLVIADIPYNIGNNAYGSNPTWYVGGNDKNGTSSKAGKTFFDTDVDFRVAEFMHFCSH 81
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L + + V ++ + + F +++ K+ +
Sbjct: 82 MLAKEPKERGKAPAMIVFCAFQQMQMVIEYGNKYGFQHSFPLIFIKNQSAQALKANMR-- 139
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
++ A+ D L N D QM +W + K+HPTQ
Sbjct: 140 ----IVGAT----EYAVVLYRDKLPKFNNDGQMVFNWFRWDT-------DNTYPKIHPTQ 184
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KP +L R++ T GD+++DP GSG++ A +L RS G E+K+D +A +++
Sbjct: 185 KPIPVLKRLIELFTDQGDVVIDPCAGSGSTLRAAAELGRSCFGFEIKKDMYRLAKEKM 242
>gi|262403655|ref|ZP_06080213.1| putative DNA methylase [Vibrio sp. RC586]
gi|262350159|gb|EEY99294.1| putative DNA methylase [Vibrio sp. RC586]
Length = 349
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
Q+++ + + +I + ++ L+KL SVDLI DPPY +A + W
Sbjct: 3 QHTLHDGRATLIHADCLTYLKKLEDNSVDLILTDPPYF-----------QVKRNAWDNQW 51
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+SF A+ LL RVLKP+G+L++ + +L F + N I+W
Sbjct: 52 PDVASF---LAWLDEVLLEFWRVLKPSGSLYLFCGS-KLASDTEILIRNRFEVFNHIIWA 107
Query: 133 KSNPMPNFRGRR 144
K + +
Sbjct: 108 KPSGPWRRMHKP 119
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP+ LL I+ S++ D++LD F GSG++G L R FIGIEM+++ + A
Sbjct: 285 HPCEKPQDLLQHIISVSSRENDVVLDAFMGSGSTGKACLSLNRCFIGIEMEEETFEQALA 344
Query: 264 RIASV 268
+ ++
Sbjct: 345 SMKNI 349
>gi|317178081|dbj|BAJ55870.1| fusion protein of dpnA and hopN [Helicobacter pylori F16]
Length = 95
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y IA K
Sbjct: 31 HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90
Query: 264 RIASV 268
R+
Sbjct: 91 RLNLF 95
>gi|192359023|ref|YP_001984102.1| putative DNA methylase [Cellvibrio japonicus Ueda107]
gi|190685188|gb|ACE82866.1| possible DNA methylase [Cellvibrio japonicus Ueda107]
Length = 1004
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 23/121 (19%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W++++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 179 WQNRMILGDSLQVMASLAEREQLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNASH 238
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L R +L +G+++V N+ R+ +
Sbjct: 239 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLTVARDLLTESGSIFVQIGDENVHRVRAV 296
Query: 118 L 118
+
Sbjct: 297 M 297
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ + + + G+K++ Q L+ R ++ +T PGD++LDP GSGT+
Sbjct: 458 FPAYPYNNVWTDAVGQNQFGGDKIYVVQTANKLIERCVLMTTDPGDLVLDPTCGSGTTAY 517
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
VA++ R +I I+ + + +A RI
Sbjct: 518 VAEQWGRRWITIDTSRVALALARARI 543
>gi|325578404|ref|ZP_08148539.1| type III restriction-modification system methyltransferase
[Haemophilus parainfluenzae ATCC 33392]
gi|325160140|gb|EGC72269.1| type III restriction-modification system methyltransferase
[Haemophilus parainfluenzae ATCC 33392]
Length = 613
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/191 (12%), Positives = 61/191 (31%), Gaps = 27/191 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ I+G ++ VL+ L S+ +I+ DPPYN + + + +
Sbjct: 80 ENIFIEGENLDVLKVLQKSYFNSIKMIYIDPPYNTGNDFVYNDNFKQDLKDYQEKSGELD 139
Query: 77 S------------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ L + +LK +G +++ + ++ +
Sbjct: 140 DEGKLKLAFKKNSKENGHFHSKWLNMMLPRLHLAKNLLKDDGVIFISIDDNEQAQLKLLC 199
Query: 119 QNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ + D++W + + N +H + + + Y N + + +
Sbjct: 200 DEVFGEENFIADVIWNSTKSVTNTA--LISVSHTYTLIYAKNID--YYIKNREKFRLPED 255
Query: 177 DVQMRSDWLIP 187
+ P
Sbjct: 256 GEGFSNPDNDP 266
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKK-----LRRSF 248
+ DG + KP LL RIL ST DIILD F GSGT+ + R F
Sbjct: 366 KMFDGTAVFSNPKPIGLLQRILSLSTEKNSNDIILDFFSGSGTTAHAIMELNKDGGNRKF 425
Query: 249 IGIEM 253
I +++
Sbjct: 426 IVVQL 430
>gi|317060340|ref|ZP_07924825.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313686016|gb|EFS22851.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 255
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 79/234 (33%), Gaps = 26/234 (11%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LI AD PYNL G + + D + F
Sbjct: 20 KAQLIIADIPYNLGNNAYASSPEWYIGGDNKNGESKKANKSFFDTDHNFKIAEFFHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L + + V ++ + +V+ K++ +
Sbjct: 80 MLKPEPKEKNQAPCMIVFCAFQQFQTVIDYAAKYGIKKYIPLVFIKNSSPQVLKANMRVV 139
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
K + N +I E+ + + EK+HPTQ
Sbjct: 140 GACEYALVLYRDKLPKFRNNKK---------------MIKNWFEWEKDKKGEVEKIHPTQ 184
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
KP+ +L +++ T GD+++DP GSG++ AK L+R+ G E+K+D +A
Sbjct: 185 KPQRVLKKLIEIFTDEGDVVIDPVAGSGSTLRAAKDLKRNSYGFEIKKDMYQLA 238
>gi|117924618|ref|YP_865235.1| nuclease [Magnetococcus sp. MC-1]
gi|117925871|ref|YP_866488.1| nuclease [Magnetococcus sp. MC-1]
gi|117608374|gb|ABK43829.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
gi|117609627|gb|ABK45082.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
Length = 452
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/260 (17%), Positives = 88/260 (33%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLY--RPDHSLVDAVTDSW-- 72
+ +++ G+S+ V+ + + L DPPY + +G + + +++ W
Sbjct: 179 EHRLLCGSSLNPEDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSD 238
Query: 73 -------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
D E Y+ F R+ + PN + + + + + + +
Sbjct: 239 SYGVTWDDSSQGPELYEGFIRSAIDHAIE---PNAAWYCWHASKRQAMLEAVWEKMGAFQ 295
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
I+W K + + + N + + W
Sbjct: 296 HQQIIWNKEKGVLTRSKYLW-----------KHEPCLMGWIKGNMPPKINGAEFLSTVWD 344
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
I SG ER HPT KP + + + G + +PF GSG+ +
Sbjct: 345 IRGLSGEERP-------DHPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTG 397
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R +E+ Y+D+A KR
Sbjct: 398 RRVHAMEISPVYVDVAVKRF 417
>gi|117926035|ref|YP_866652.1| nuclease [Magnetococcus sp. MC-1]
gi|117609791|gb|ABK45246.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
Length = 452
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 88/260 (33%), Gaps = 35/260 (13%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLY--RPDHSLVDAVTDSW-- 72
+ +++ G+S+ V+ + + L DPPY + +G + + +++ W
Sbjct: 179 EHRLLCGSSLNPEDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKESRKRESLNKDWSD 238
Query: 73 -------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
D E Y+ F RA + PN + + + + + + +
Sbjct: 239 SYGVTWDDSSQGPELYEGFIRAAIDHAIE---PNAAWYCWHASKRQAMLEAVWEKMGAFQ 295
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
I+W K + + + N + + W
Sbjct: 296 HQQIIWNKEKGVLTRSKYLW-----------KHEPCLMGWIKGNMPPKINGAEFLSTVWD 344
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
I SG ER HPT KP + + + G + +PF GSG+ +
Sbjct: 345 IRGLSGEERP-------DHPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMAGEMTG 397
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R +E+ Y+D+A KR
Sbjct: 398 RRVHAMEISPVYVDVAVKRF 417
>gi|319896754|ref|YP_004134948.1| DNA methylase [Haemophilus influenzae F3031]
gi|317432257|emb|CBY80609.1| DNA methylase [Haemophilus influenzae F3031]
Length = 245
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 30/240 (12%)
Query: 39 SVDLIFADPPYNLQLN-----------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL N G + ++ DK + F
Sbjct: 20 KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ I + + F +V+ KS+ +
Sbjct: 80 MLIKEPKERGKAPCMIVFCAFQQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANM--- 136
Query: 148 AHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A Y D L N + +M + E+ K+ KLHP
Sbjct: 137 ---------KVVGATEYALILYRDKLPKFNNNGKMIKN-----WFEWEKDNRKEIPKLHP 182
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKP A+L R++ T GD+++DP GS ++ A++L R G E+K+D IA +++
Sbjct: 183 TQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAARELYRPSYGFEIKKDSCKIAKEQM 242
>gi|307638178|gb|ADN80628.1| type III restriction-modification system methylation subunit
[Helicobacter pylori 908]
Length = 428
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 18/193 (9%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA--------V 68
K +IKG+++ L+ L ++ + +I+ DPPYN + +Y D S +
Sbjct: 89 KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148
Query: 69 TDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ D + + +F LL R +LK +G +++ + ++ +
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
++S + HE + + + F ++
Sbjct: 209 GEGNFLGDFIKQSKVGGGSDSKFIVKEHEYCLVYAKNINLTNEMFLKHDDDYLKRYKEID 268
Query: 182 SDWLIPICSGSER 194
+ S R
Sbjct: 269 DKGRFFWDTFSRR 281
Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
F + M +D+ I ++ + + +K+ K +S +
Sbjct: 323 KIKDKWSVQFKQYLNLNGKKPRSMTTDFGGSIEGKNDIINLFNSDKIFSYPKSIKFISTL 382
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L +T GDIILD F GSGT+ +
Sbjct: 383 LKIATNEGDIILDFFAGSGTTAHAVLESN 411
>gi|306836193|ref|ZP_07469177.1| type III restriction-modification system DNA-methyltransferase
[Corynebacterium accolens ATCC 49726]
gi|304567914|gb|EFM43495.1| type III restriction-modification system DNA-methyltransferase
[Corynebacterium accolens ATCC 49726]
Length = 360
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 25/134 (18%)
Query: 8 AINENQNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPD 61
+ ++ + +W K+ I+G+++ VL+ L + +I+ DPPYN + PD
Sbjct: 81 TLRPDKENSKDWDTTKNVFIEGDNLEVLKILQKHYHGKIKMIYIDPPYNTGKDF--VYPD 138
Query: 62 HSL---------VDAVTDSWDKFSSFEA--------YDAFTRAWLLACRRVLKPNGTLWV 104
+ V + K SS + L R +L +G + V
Sbjct: 139 NYKEGLETYLEWSKQVNEDGKKLSSNSESEGRYHSNWLNMMYPRLKLARNLLASDGFIAV 198
Query: 105 IGSYHNIFRIGTML 118
+ + ++
Sbjct: 199 SIGDDEVGTLRLLM 212
>gi|281420518|ref|ZP_06251517.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
gi|281405291|gb|EFB35971.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
Length = 561
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 67/354 (18%), Positives = 121/354 (34%), Gaps = 83/354 (23%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPP---------YNLQLNGQLY 58
+ + K+ +IKGN+ +L +L + V ++ DPP YN ++ +
Sbjct: 12 NSSMGTSDSKNILIKGNNKDILPELVGEFGGKVKCVYIDPPYNNGDSYHYYNDNISETSW 71
Query: 59 RPDHSLVDAVTDS--------WDKFSSFE-AYD----------AFTRAWLLACRRVLKPN 99
D S V W E AY ++ +R + N
Sbjct: 72 LKDISYVLMYLKMLLTKDGSIWISIDDSEMAYLKVAADKVLGRENFAGTIVWQQRKTREN 131
Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWIL---NDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
++ + + + + L + P+ R + + A
Sbjct: 132 RAVFSCNHEYILVYAKDIKKFKKSRNLLPVGEDFINSKYKNPDNDPRGPWQSISASVQAG 191
Query: 157 PSPKAKGYTFNYDA----------LKAANEDVQMRSDWLIPICSGSE-----RLRNK--- 198
+ ++ YT A A NE+ + I G E R++
Sbjct: 192 HAVPSQFYTIVSPAGIEFNPPKGRCWAYNEERMKKEIANGNIWFGLEGLNAPRIKKFLST 251
Query: 199 -------------------------------DGEKLHPTQKPEALLSRILVSSTKPGDII 227
EK+ T KPE L+ +IL +T GD++
Sbjct: 252 AKIGLTPQTLWAGDDFGTTDSAKKHLLSLFPHQEKVFDTPKPEELIRQILEIATNEGDLV 311
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
LD + GSGT+ AVA KL+R++IGIE+ + ++ R+ SV ++ ++
Sbjct: 312 LDSYLGSGTTLAVAHKLKRNYIGIEIGEQMTELVVNRLKSVIMGEKGGISDISN 365
>gi|329119560|ref|ZP_08248243.1| adenine specific DNA methylase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464324|gb|EGF10626.1| adenine specific DNA methylase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 552
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/195 (12%), Positives = 66/195 (33%), Gaps = 18/195 (9%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ +I G+++ L+ L + ++ I+ DPPYN G +Y + ++ D W
Sbjct: 43 NLLIHGDNLLALKSLLPEFGGRINCIYIDPPYNTGNEGWVY--NDNVNDPRIQKWLGEVV 100
Query: 73 ----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ S + + L +++L +G +++ + + + +
Sbjct: 101 GREGEDLSRHDKWLCMMYPRLKLLKQLLADDGVIFISIDDNEQAALKLVCDEIFGSANFI 160
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA----KGYTFNYDALKAANEDVQMRSDW 184
++ A++ ++ S S + + + + S
Sbjct: 161 GNIVRATGTTAQDTHGLGKAYDNILVFSKSSNYLIGGIPLSESDEKRYNLEDKKGKFSIL 220
Query: 185 LIPICSGSERLRNKD 199
+ G +R ++
Sbjct: 221 QLRRTGGEDRREDRP 235
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 16/166 (9%)
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
+ + + + + L S L+ K+ T KP ALL
Sbjct: 278 YFKKDNDGEWKVYYKYYFENRTKRPSDLWTDLDGNKKASIELKEIFASKVFETPKPVALL 337
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIATKRIAS 267
+IL + P IILD F GSGT+ R FIGIEM ++ +RI
Sbjct: 338 EKILTIAASPNAIILDSFIGSGTTAHAVLNLNRKDGGNRRFIGIEMMDYAENVTAERIRR 397
Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNIS 313
V + K + G L +A+ N++
Sbjct: 398 V-------INGYGTKAETQGGTGGGF---AFYRVGDALFDAEHNLN 433
>gi|293606053|ref|ZP_06688418.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292815508|gb|EFF74624.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 585
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 11/148 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL-------VDAVTD 70
+ I++G+++ L+ L A V I+ DPPYN G +Y + + + V
Sbjct: 39 NLIVQGDNLHALKALLPRYAGQVKCIYIDPPYNTGNEGWVYNDNVNSPEIRKWLGEVVGK 98
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ + + L+ ++ L+ +G ++V + + + +++ +
Sbjct: 99 EGETLDRHDRWLCMMYPRLVLLKQFLREDGAIFVSIDDNELGNLQALMREIFGTGNEVAT 158
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 159 IVWEKGKKGDS-KLVSVTHEYIVAFARN 185
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 84/292 (28%), Gaps = 28/292 (9%)
Query: 51 LQLNGQLYRPDHSLVDAVTDSWD-----KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
L+ +R V+ V + +D AW A +
Sbjct: 189 LKARKVKWRRKKPGVEEVLEFYDDLRKKHGDDHTIIRKEMMAWYRAMPKTDPRKAHKHYN 248
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-------- 157
S + N + +P +
Sbjct: 249 WSDKRGLYFAADFAGPDDGRENRPRYPILHPTTQQPCAMPSTGWRWEEDTTKAALADDPP 308
Query: 158 ---SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
K N + ++ M S + + + + + G P K +++
Sbjct: 309 RIHFGKDHTTIPNRKSYLFEIDEEPMMSVFYKDGRAATLEVESLLGAGAFPFPKDSEVIA 368
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRR------SFIGIEMKQDYIDI-ATKRIAS 267
++ T+PGDI+LD F GSGT+ + + +FI +E+ + + RI
Sbjct: 369 DLVGMVTEPGDIVLDSFGGSGTTAHAVLRKNQHLKKPLNFILVEIDSNTAETKTRTRIKK 428
Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
T L GK+ P + + L A G I +TV D
Sbjct: 429 AI----EGYTPLVGKKKTPVPGLGG-GFQYFRLSEEPLFQADGKIRSTVSYD 475
>gi|159033046|gb|ABW87807.1| SpcM [Streptomyces spectabilis]
Length = 267
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 85/245 (34%), Gaps = 30/245 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+S+++LE +P SV + PP+ G D A + W
Sbjct: 22 HWGDSLALLEGVPDGSVRAVVCSPPF----EGPQLIADEDRAGACSSDW----------- 66
Query: 84 FTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLN--------FWILNDIVWRKS 134
+ RVL+P+G + + +G G +Q+ W L + +
Sbjct: 67 -LMPFFGQFERVLRPDGCVAFELGGLWLSDAPGKAVQHAGAVHALAKAGWRLVQDFYYYN 125
Query: 135 NPMPNF---RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ N R ++ + + + A ++
Sbjct: 126 PQLLNPEPEGAARAPDSVTPIWVMARTHDVHYDVSALRHPARAPFVRGNLLEFDTSGVYD 185
Query: 192 SERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+ LHP + P + + T+PGD++LDPF GSG + A++L R ++
Sbjct: 186 RAYEKTLAETSLHPYVDRWPTVVPELFVELLTRPGDLVLDPFAGSGATCFAAERLGRRWL 245
Query: 250 GIEMK 254
G E+
Sbjct: 246 GFELD 250
>gi|325998366|gb|ADZ50574.1| Type III restriction-modification methylation subunit [Helicobacter
pylori 2017]
Length = 424
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 18/193 (9%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA--------V 68
K +IKG+++ L+ L ++ + +I+ DPPYN + +Y D S +
Sbjct: 89 KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148
Query: 69 TDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ D + + +F LL R +LK +G +++ + ++ +
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
++S + HE + + + F ++
Sbjct: 209 GEGNFLGDFIKQSKVGGGSDSKFIVKEHEYCLVYAKNINLTNEMFLKHDDDYLKRYKEID 268
Query: 182 SDWLIPICSGSER 194
+ S R
Sbjct: 269 DKGRFFWDTFSRR 281
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
F + M +D+ I ++ + + +K+ K +S +
Sbjct: 323 KIKDKWSVQFKQYLNLNGKKPRSMTTDFGGSIEGKNDIINLFNSDKIFSYPKSIKFISTL 382
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L +T GDIILD F GSGT+ +
Sbjct: 383 LKIATNEGDIILDFFAGSGTTAHAVLESN 411
>gi|308186460|ref|YP_003930591.1| hypothetical protein Pvag_0949 [Pantoea vagans C9-1]
gi|308056970|gb|ADO09142.1| hypothetical protein Pvag_0949 [Pantoea vagans C9-1]
Length = 346
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + VL+ +P SVDLI DPPY D + W E Y
Sbjct: 11 LFNADCLRVLKTMPDDSVDLIVTDPPYF-----------KVKPDGWDNQW---KGDEDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKPNG++++ S H + ++ F ILN I+W K +
Sbjct: 57 RWLDCCLADFWRVLKPNGSIYLF-SGHRLASDIEIMMRTRFNILNHIIWAKPDGRWKGCN 115
Query: 143 RRFQNAHE 150
+ ++
Sbjct: 116 KESLRSYF 123
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 12/216 (5%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ DA + D+ + + R L T V + + +
Sbjct: 134 HYQGPYKPDAYSRKCDELK--QQVLTPLIDYFRNARSELGVTATQIVAATGKK--NMVSH 189
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ W L + ++ TL Y+ N L+ E
Sbjct: 190 WFGGSQWQLPNEADYLKLQALFTDIAFARHQSGTLAKPHHQLADTYYSLNRKYLELLKEY 249
Query: 178 VQMRSDW------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+R + + ++ G+ HP +KP +L +I+ +S++PGD++ D F
Sbjct: 250 KSLRRYFGVTAAVPYTDVWTHKPVQFYPGK--HPCEKPADMLEQIINASSRPGDVVADFF 307
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSG++ A KL R IG+E++++ +
Sbjct: 308 MGSGSTIKAAIKLGRFAIGVELEEERFRQTFSELNQ 343
>gi|325996774|gb|ADZ52179.1| Type III restriction-modification system methylation subunit
[Helicobacter pylori 2018]
Length = 425
Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 18/193 (9%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA--------V 68
K +IKG+++ L+ L ++ + +I+ DPPYN + +Y D S +
Sbjct: 89 KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148
Query: 69 TDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ D + + +F LL R +LK +G +++ + ++ +
Sbjct: 149 KEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISIDDNEAAQLKLLCDEIF 208
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
++S + HE + + + F ++
Sbjct: 209 GEGNFLGDFIKQSKVGGGSDSKFIVKEHEYCLVYAKNINLTNEMFLKHDDDYLKRYKEID 268
Query: 182 SDWLIPICSGSER 194
+ S R
Sbjct: 269 DKGRFFWDTFSRR 281
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
F + M +D+ I ++ + + +K+ K +S +
Sbjct: 323 KIKDKWSVQFKQYLNLNGKKPRSMTTDFGGSIEGKNDIINLFNSDKIFSYPKSIKFISTL 382
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L +T GDIILD F GSGT+ +
Sbjct: 383 LKIATNEGDIILDFFAGSGTTAHAVLESN 411
>gi|119946134|ref|YP_943814.1| DNA methylase N-4/N-6 domain-containing protein [Psychromonas
ingrahamii 37]
gi|119864738|gb|ABM04215.1| DNA methylase N-4/N-6 domain protein [Psychromonas ingrahamii 37]
Length = 658
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 18/170 (10%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
E + ++ I+G+++ L+ L V +I+ DPPYN + D
Sbjct: 88 REESVNFDTTENLFIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYKDDFAENAD 147
Query: 67 AVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ ++ + + + L R +L +G +++ +
Sbjct: 148 SYAKKSNQQDEIGNRLVANTDSNGRYHSDWTSMIYSRLRLARNLLTEDGVIFMSIGQEEV 207
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+L + + + +G F + ++ + +
Sbjct: 208 AASCQILNEVLGENNFITIISRVMKTGGQKGVHFSPCVDYILVYAKKIEH 257
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 7/179 (3%)
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFW--IL 126
+K+ S Y A + P+G+ + N + G + +
Sbjct: 284 KGEKYRSMGLYQAMLDKRANQRYYIECPDGSYVIPPGELMPNSPKDGNKVTPQDGDGVWR 343
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+ + K Y + + + +
Sbjct: 344 WTYERFARERAAGNVEFIASDRTSLIDNEGKQAKWNVYYRIWLKDRMRDGQLPGNITEKF 403
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKL 244
S L+N KP +L+ ++ + D+ILD F GSGT+ + +
Sbjct: 404 QSRHSSAELKNIG--IPFDFPKPTSLIRYLMTLVSLNDNDVILDFFAGSGTTAHASIEY 460
>gi|325926088|ref|ZP_08187449.1| DNA modification methylase [Xanthomonas perforans 91-118]
gi|325927475|ref|ZP_08188718.1| DNA modification methylase [Xanthomonas perforans 91-118]
gi|325542154|gb|EGD13653.1| DNA modification methylase [Xanthomonas perforans 91-118]
gi|325543433|gb|EGD14855.1| DNA modification methylase [Xanthomonas perforans 91-118]
Length = 99
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTD 70
K+++++G+++++L L A S D + DPPY Y D D V D
Sbjct: 2 KNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGD 61
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
D+ ++ + WL C RVLK + + + +
Sbjct: 62 ERDQ----RSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLP 99
>gi|167743449|ref|ZP_02416223.1| DNA methylase [Burkholderia pseudomallei 14]
gi|167907411|ref|ZP_02494616.1| DNA methylase [Burkholderia pseudomallei NCTC 13177]
Length = 87
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
RL + E++ HPTQKP ++ R++++S PG +LDPF GSGT+ + RR F+G E
Sbjct: 3 RLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQRRGFVGYE 62
Query: 253 MKQDYIDIATKRIASVQ 269
+ + Y IA +R+AS+
Sbjct: 63 INESYCAIARERVASLA 79
>gi|298735507|ref|YP_003728028.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
gi|298354692|emb|CBI65564.1| site-specific DNA-methyltransferase (adenine-specific)
[Helicobacter pylori B8]
Length = 486
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNENFIYGDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEVLKQLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ ++ + + + FQN +E ++ + +A
Sbjct: 194 DNEAAQLKLLCDEIFGERNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKHVEA 247
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
N N + + +E +I K N + A D + +
Sbjct: 349 RWTWALDTFNSNKNIISIKKNSRNEYVICKKEFLDKKQVKQNENGEFYAILDKSSPTRNV 408
Query: 186 IPICSGSERLRNKD---GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
I G + + +K+ KP L+SR++ ST DIILD F GSGT+
Sbjct: 409 IENIGGGNGTKEVNALFNQKIFNNPKPTKLISRLIELSTNESDIILDFFAGSGTTAHAVL 468
Query: 243 KLR 245
+
Sbjct: 469 ESN 471
>gi|306821022|ref|ZP_07454641.1| methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|304550963|gb|EFM38935.1| methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715]
Length = 651
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 18/174 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E+ + E + IIKGN++ L L V I+ DPPYN +
Sbjct: 164 EDNVTFDENDNLIIKGNNLIALSSLLKRYEGKVKCIYIDPPYNTGSD------------- 210
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
+ +++ + + F + L +R+L+ G ++V + ++ +
Sbjct: 211 -SFNYNDAFNHSGWLTFMKNRLELAKRLLRETGVIFVQCDDNEQAYAKVLMDEIFGINNF 269
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPS-PKAKGYTFNYDALKAANEDVQM 180
+ + N H+ ++ + + K Y +D K +D
Sbjct: 270 VAEFPRVTKRGGKSSSVIANNHDYVLMCAKNKHNVKIYAPKHDDDKFNQKDKYF 323
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 3/180 (1%)
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
+ + L P G + N L + + R +
Sbjct: 350 IELEGKTLYPGGDYNMYQKRQNGEHRRADWAWRWSENLFNFGLANGFIVLKEGKDRPRIY 409
Query: 149 HETLIWASPSPKAKGYTF-NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+T YT N D K + + + + L + +
Sbjct: 410 TKTYQKVKIVDNNGEYTIVNIDRTKPLSTIELTNNIYSNDNATKHAELLGI--KNIFDYT 467
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KPE L+ ++ + DI+LD GSGT+ AVA K+ R +IG+E +I +R+
Sbjct: 468 KPEFLIRELISLAADKNDIVLDFHLGSGTTCAVAHKMGRRYIGVEQMDYIQNITVERMKK 527
>gi|284048552|ref|YP_003398891.1| Site-specific DNA-methyltransferase (adenine- specific)
[Acidaminococcus fermentans DSM 20731]
gi|283952773|gb|ADB47576.1| Site-specific DNA-methyltransferase (adenine- specific)
[Acidaminococcus fermentans DSM 20731]
Length = 640
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 57/176 (32%), Gaps = 11/176 (6%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ + S ++KII G++++ L+ L + I+ DPPYN G +
Sbjct: 24 LQRVYSYDEKGQHPEDNGSENKIIHGDNLAALKSLLPQYEGKIKCIYIDPPYNTGNEGWV 83
Query: 58 YRPDHSL-------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
Y + + + V + S + + L +R+L +G +++ +
Sbjct: 84 YNDNVNDPRIQKWLGEVVGKEGEDLSRHDKWLCMMYPRLRLLQRLLSEDGAIFISIDDNE 143
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ + + + P + E ++ S +
Sbjct: 144 QAHLKEICDEIFGIQCFVASISWQHTYSPRNDSKGISGETEYILVYSKKIGWTPHK 199
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
D + ++ G+K+ T KP LL RI+ +T I+LD F GSGT+
Sbjct: 355 FWSYDETGHTDEAKKEIKTIFGKKVFDTPKPTRLLKRIIQIATNKDSIVLDAFAGSGTTA 414
Query: 239 AVAK------KLRRSFIGIEMKQDYIDIATKR----IASVQPLGNIELTVLTGKRTEPRV 288
R FI +EM DI +R I+ N E ++ K T +
Sbjct: 415 HSVLETNLEDNGNRKFILVEMMDYANDITAQRVKKVISGYSKEKNKENVLMEEKITLKVL 474
Query: 289 AFN-LLVERGL 298
L+E+ L
Sbjct: 475 EKGKELIEQAL 485
>gi|15838888|ref|NP_299576.1| DNA methylase [Xylella fastidiosa 9a5c]
gi|9107461|gb|AAF85096.1|AE004041_8 DNA methylase [Xylella fastidiosa 9a5c]
Length = 156
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 68/173 (39%), Gaps = 22/173 (12%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A++ WL CRRV +P G L V + + + +Q+ + +VW K+
Sbjct: 1 MAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKTPACRPQL 60
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
GR A E ++WAS N A V E
Sbjct: 61 GRFRSQA-EFIVWASCGL------MNPKAHPVTPVGVFPTG--------------TAPRE 99
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
K H KP AL+ ++ P ILDPF GSGT+G A + FIG+EM
Sbjct: 100 KRHQVGKPLALMEHLIKIV-PPASTILDPFAGSGTTGVAALRAGHRFIGMEMS 151
>gi|207110618|ref|ZP_03244780.1| DNA methylase [Helicobacter pylori HPKX_438_CA4C1]
Length = 71
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
PE L+ R L + DI+LDPF G+GT+ VAK+L R FIGI++ + Y ++A +R+
Sbjct: 1 AMFPEELVKRCLKLFSYQNDIVLDPFNGAGTTTKVAKQLGRRFIGIDISEKYCEVAKERL 60
Query: 266 ASV 268
Sbjct: 61 KET 63
>gi|253576045|ref|ZP_04853378.1| site-specific DNA-methyltransferase [Paenibacillus sp. oral taxon
786 str. D14]
gi|251844620|gb|EES72635.1| site-specific DNA-methyltransferase [Paenibacillus sp. oral taxon
786 str. D14]
Length = 663
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/214 (18%), Positives = 65/214 (30%), Gaps = 35/214 (16%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
++ E + II G ++ + L +DLI DPPYN + + D
Sbjct: 59 NDNSIEGNNIIIDGENLQAMVTLYKYKGQIDLIVTDPPYNTGKDFR-----------YND 107
Query: 71 SWD---------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
WD S + F L + +LKPNG L + F +G
Sbjct: 108 KWDTDPNDPDLGELVTLEDGSRHTKWMKFMLPRLQMMKAMLKPNGVLAICIDEREFFHLG 167
Query: 116 TMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+L I+ + + P + A E ++ +
Sbjct: 168 MLLNEVFGEENRIGIINWQKSYSPKNDSKHVSTATEYVLVYAKDKATAKTNLMPREQNMD 227
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
+ SD L +N D PT+K
Sbjct: 228 SRYWNPDSDPLGVWK------KNGDATVATPTEK 255
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 51/152 (33%), Gaps = 10/152 (6%)
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
LN++VW + GR H T + P +YD +
Sbjct: 351 LNNMVWPTLYFGTDGYGRPSLKRHLTFVKKGKVPMTYWADEDYDEPFVLESQSWDHEESG 410
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+E T KP L+ +I+ I+LDPF GSGT+G +L
Sbjct: 411 HSQAGINELDAILGKGHNFETVKPLKLIKKIIHLWCPADGIVLDPFAGSGTTGHAILELN 470
Query: 246 ------RSFIGIEM----KQDYIDIATKRIAS 267
R FI IE + + +RI
Sbjct: 471 EIAGTKRRFILIEKGEEEDRYASTLTRERIKR 502
>gi|317182587|dbj|BAJ60371.1| fusion protein of dpnA and hopN [Helicobacter pylori F57]
Length = 95
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L R+FIGIE +++Y IA K
Sbjct: 31 HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLERNFIGIESEKEYFQIAKK 90
Query: 264 RIA 266
R+
Sbjct: 91 RLD 93
>gi|188535906|ref|YP_001909392.1| DNA recognition and methylase subunit Mod [Erwinia tasmaniensis
Et1/99]
gi|188027010|emb|CAO94796.1| DNA recognition and methylase subunit Mod (type III restriction and
modification system), similar to LlaFI [Erwinia
tasmaniensis Et1/99]
Length = 663
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 20/164 (12%)
Query: 10 NENQNSIFEW---KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS 63
N + I + + IIKGN++ L L + V LI+ DPPYN +G Y
Sbjct: 160 NGKSSKITKISVDDNLIIKGNNLIALNLLKLTHKEKVKLIYIDPPYNTGSDGFKYN---- 215
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
DKF + + F + L + + +L + + + ++ +
Sbjct: 216 ---------DKF-NHSTWLTFIKNRLESAKELLSDDAFICCHIDDSESHYLKVLMDMVFG 265
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ N ++ + H+ + K+ N
Sbjct: 266 ADNYINTFYIQVRYANKTLKQDMSFHKQIEQVHIYRKSNKAEPN 309
Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R++ G +L +KPE LL I+ + D+ILD GS T+ AVA K+ R +IGIE
Sbjct: 458 RHEGGVELRSGKKPEFLLKTIINHFSNQNDLILDFHLGSATTCAVAHKMGRRYIGIEQMD 517
Query: 256 DYIDIATKRIASVQPLGNIELT 277
DI R+ +V ++
Sbjct: 518 YIKDICIPRMVNVINGDKTGIS 539
>gi|327478904|gb|AEA82214.1| type III restriction-modification system methyltransferase
[Pseudomonas stutzeri DSM 4166]
Length = 406
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 25/203 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL---------- 57
E E K+ I G+++ L+ + V LI+ DPPYN +
Sbjct: 90 EESVGFEETKNIFIDGDNLDALKLIQETYLGKVKLIYIDPPYNTGSDFVYADDFAQGADE 149
Query: 58 -------YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D S + T + +F S A+ + A L R VL +G +++
Sbjct: 150 YLERSLQRSSDGSRLTTNTSTSGRFHS--AWMSMMLARLRLARNVLSDDGVIFISIDDGE 207
Query: 111 IFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ + +S N +RF H + S S + N +
Sbjct: 208 QANLKKICDEVFGEGNFIADAIWRSKDNSNNDAKRFSTDHNHTLIYSKSSGWEPAKLNDE 267
Query: 170 ALKAANEDVQMRSDWLIPICSGS 192
A ++ +D P G+
Sbjct: 268 AKRSHF--KNPDNDPRGPYFDGN 288
>gi|325107567|ref|YP_004268635.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
5305]
gi|324967835|gb|ADY58613.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
5305]
Length = 427
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 83/254 (32%), Gaps = 55/254 (21%)
Query: 22 KIIKGNS--ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ + + + ++ SVD+I D PY+ + +F
Sbjct: 217 RLYHSDFRDLEQVARIEPGSVDIILTDVPYDRKFTT------------------QFDDLG 258
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
A+ RVLK G V + + +
Sbjct: 259 AF----------ASRVLKDGGVFCVYLGVVQVADAIKSFTKHLEYRATAFSSWLGDGPVI 308
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
+ + L+++ +N A +D
Sbjct: 309 QPLQCVTQSTPVLVFSKGKWTRTTRWYNSFHNSVAEQD---------------------- 346
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
LH QKP + L+S + PGD+I DP GSG++ AV ++ R F+G ++ +D +
Sbjct: 347 ---LHEWQKPLVDVEHWLLSFSDPGDLICDPCAGSGSTAAVCRRHDRCFVGGDIDRDAVR 403
Query: 260 IATKRIASVQPLGN 273
+A R+ P+ +
Sbjct: 404 LAQTRLKEETPVCD 417
>gi|239616473|ref|YP_002939795.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239505304|gb|ACR78791.1| DNA methylase N-4/N-6 domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 683
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 21/184 (11%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ IIKGN++ VL L + V LI+ DPPYN + + D+
Sbjct: 188 NLIIKGNNLLVLYSLLKEFRGKVKLIYIDPPYNTGSD-EFQYNDNFR------------- 233
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
+ F + L + +LK +G ++V +H I + ++ I+ K+
Sbjct: 234 HSTWLTFMKNRLEVAKELLKDDGAIFVQLDHHEIGYLNVLMDETFGRGNKVQIIAIKTAS 293
Query: 137 MPNFR--GRRFQNAHETLIWASPSPKAKGYTFNY-DALKAANEDVQMRSDWLIPICSGSE 193
F+ + E +++ + K + Y + N D + + P E
Sbjct: 294 PAGFKVVNPGPIDVTEYILFYARDKKKFNFKLQYVEVEYHENYDRVILNFEDKPENWKLE 353
Query: 194 RLRN 197
++
Sbjct: 354 SIKK 357
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ N+ G +L +KPEALL RI+ ST+ DI+LD F G+GT+ AVA K+ R +IG+E
Sbjct: 483 IANEGGVRLKEGKKPEALLKRIIELSTEENDIVLDFFMGTGTTCAVAHKMGRQYIGVEQL 542
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
+ A R+ +V ++ + + GL++ +I
Sbjct: 543 DYGENSAVVRLKNVINGDQTGIS-----KAVGWQGGGDFIYMGLMKNNEI 587
>gi|307245675|ref|ZP_07527761.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307259089|ref|ZP_07540819.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306853377|gb|EFM85596.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306866756|gb|EFM98614.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 614
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 22/166 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD- 73
+ I+G ++ VL+ L S+ +I+ DPPYN + + + + A T
Sbjct: 67 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTGEIGE 126
Query: 74 --------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ L R +LK +G +++ + ++ +
Sbjct: 127 DGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLKLLCD 186
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ +G HE ++ + +
Sbjct: 187 EVFGEENFVAELIWDKQHSQQQGLFKTY-HEYVLLYAKNINNHKNI 231
Score = 42.7 bits (99), Expect = 0.095, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 367 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417
>gi|187251367|ref|YP_001875849.1| DNA modification methylase [Elusimicrobium minutum Pei191]
gi|186971527|gb|ACC98512.1| DNA modification methylase [Elusimicrobium minutum Pei191]
Length = 396
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/293 (17%), Positives = 96/293 (32%), Gaps = 45/293 (15%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSI--SVLEKLPAKSVDLIFADPPYNLQL-NGQLY 58
S N+ A+ + N K +++ G+S + + AK D IF DPPY + +
Sbjct: 144 SIDNAPAVTKTGNVWLLGKHRLLCGDSTKKESFDAISAKEADFIFTDPPYGIDIAKSGAI 203
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ D ++ Y + + + ML
Sbjct: 204 GSSGKKYKPIIGDNDTATARAFY--------ELAKEL-----------------NLKDML 238
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ + + + + N RG N A F++ E
Sbjct: 239 IWGANYFADFLPVSRRWLVWNKRGEMDSNNFADGEIAWVRSDGNLRIFSHVWSGYTREGS 298
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
E L+ + +HPTQKP + I +P +++ D F GSG++
Sbjct: 299 H------------KEELKTR----IHPTQKPVGVCIDIFKEL-EPFEVVFDAFMGSGSTL 341
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
+K+++ +GIE+ Y D+ +R + + E + +
Sbjct: 342 IACEKMKKVCLGIEIDPKYCDLIIERWQNYTGEKAVLKNTGKTYEEEKKDSKK 394
>gi|153868265|ref|ZP_01998283.1| methyltransferase [Beggiatoa sp. SS]
gi|152144415|gb|EDN71717.1| methyltransferase [Beggiatoa sp. SS]
Length = 191
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
F E + + Y + ++ AN + + +
Sbjct: 1 MFTKTKEFIFNLDEIRVPQKYYRERNNMRGANPGDVWTFSHVHYCH---------ENRQN 51
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQKPE L+ R++++S+ G +LDPF GSGT+ V ++L R+ IGIE+ +Y+ ++ +
Sbjct: 52 HPTQKPEGLIERMILASSHEGAQVLDPFLGSGTTLRVCQQLNRACIGIELNPNYVKMSQE 111
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
R+ Q +V P + + + I+
Sbjct: 112 RL---QKKFAEFDSVDPRMERVPLDLRDESIRKKYIE 145
>gi|134093943|ref|YP_001099018.1| putative site-specific DNA-methyltransferase (adenine-specific)
[Herminiimonas arsenicoxydans]
gi|133737846|emb|CAL60891.1| putative Site-specific DNA-methyltransferase (adenine-specific)
[Herminiimonas arsenicoxydans]
Length = 841
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Query: 23 IIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I+ ++ L+ L VD I+ DPPYN Y D D D++
Sbjct: 134 LIEADNYHALQLLVFPYEGKVDCIYIDPPYNTGARDWKYNND------YVDKNDQWQ-HS 186
Query: 80 AYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ F L +R+L P NG L V H + +G +L+ +V +N
Sbjct: 187 KWLTFMAKRLKLAKRLLNPENGVLIVTIDEHEVNHLGMLLKREFPEARQQMVTIVNNGAG 246
Query: 139 NFRGRRFQ 146
+G ++
Sbjct: 247 VSQGGFYR 254
>gi|46143331|ref|ZP_00135457.2| COG2189: Adenine specific DNA methylase Mod [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208289|ref|YP_001053514.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae L20]
gi|126097081|gb|ABN73909.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 5b str. L20]
Length = 615
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 22/166 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD- 73
+ I+G ++ VL+ L S+ +I+ DPPYN + + + + A T
Sbjct: 67 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTGEIGE 126
Query: 74 --------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ L R +LK +G +++ + ++ +
Sbjct: 127 DGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLKLLCD 186
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ +G HE ++ + +
Sbjct: 187 EVFGEENFVAELIWDKQHSQQQGLFKTY-HEYVLLYAKNINNHKNI 231
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ KP +LS + T DIILD F GSG++ +
Sbjct: 367 LKELMNATAFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417
>gi|323965397|gb|EGB60853.1| DNA methylase [Escherichia coli M863]
gi|327250326|gb|EGE62045.1| DNA methylase family protein [Escherichia coli STEC_7v]
Length = 352
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ RG Q H+ + S + YT K + + ++
Sbjct: 221 KHQRGELEQPHHQLVSTYSELN--RQYTELLREYKNLRRYFGVTVQVPYTDVWMHKPVQY 278
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G+ HP +KP +L +I+ +S++PGD++ D F GSG++ + L R IG+E++ +
Sbjct: 279 YPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKASMALGRRAIGVELETER 336
Query: 258 IDIA 261
+
Sbjct: 337 FEQT 340
>gi|167579290|ref|ZP_02372164.1| type III DNA modification methyltransferase [Burkholderia
thailandensis TXDOH]
Length = 594
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP---------------- 60
++ +I+G ++ VL+ L L++ DPPYN +
Sbjct: 101 RNLMIEGENLEVLKLLQKSYAGRAKLVYIDPPYNTGKDFVYSDNFTDSLRHYLELTGQTT 160
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + TD+ +F + + L R +L +G + V H + +++
Sbjct: 161 GGKRISSHTDASGRFHT--DWLNMIYPRLKLARDLLADDGVIAVHIDEHEQHALVLVMRE 218
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V P R HE+++ +
Sbjct: 219 IFGEDNELGVAVWDKRNPKGDARGIAYQHESIVLFAR 255
Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 90 LACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
A + +G ++ V ++ N + F L V K P+P R
Sbjct: 311 EAMYDRISADGRVYRLVSMAWPN----KKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPA 366
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
+ LI T + +E+ + + GS+ K
Sbjct: 367 TMQALIDKGLVEFGADETTQPQRIYFLDEN-MYENVPSVLPFGGSDDALMKSLGIPFDQP 425
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP + I+ T D+I+D F GSGT+G R ++ +++
Sbjct: 426 KPVEFAASIIGWCTDGDDLIVDFFGGSGTTGHAVMALNAADGGNRRYVLVQL 477
>gi|255007947|ref|ZP_05280073.1| type III DNA modification enzyme [Bacteroides fragilis 3_1_12]
Length = 664
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 61/185 (32%), Gaps = 19/185 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------ 55
E + + ++ I+G+++ ++ L VD+I+ DPPYN +
Sbjct: 94 EESRNWEQTQNLYIEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEE 153
Query: 56 ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ R + ++ + + A L+ +L NG +++ H +
Sbjct: 154 SDEKQGRYNEEGQRLFQNTEANGKFHSDWCSMMYARLMLAHTLLNDNGIIFISIDDHELA 213
Query: 113 RIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + N D+ P ++ + E ++ +
Sbjct: 214 NLIKIGNEVFNASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQGLKKES 273
Query: 172 KAANE 176
++N
Sbjct: 274 VSSNG 278
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 12/129 (9%)
Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+K+ KP +L+ + + I++D F GSGT+ ++ + K YI
Sbjct: 404 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPR--KNKVKYI 461
Query: 259 ------DIATKRIASVQPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQPGQILTNAQG 310
D+ + P + TE A N L + + + G +
Sbjct: 462 LVQLPEDVTETIKKAKTPSEKEIMQNAIDFLTEKHKALNICELSKERIRRAGDTIEAECN 521
Query: 311 NISATVCAD 319
+ D
Sbjct: 522 QLKLKNRPD 530
>gi|254493898|ref|ZP_05107069.1| LOW QUALITY PROTEIN: twin-argninine leader-binding protein DmsD
[Neisseria gonorrhoeae 1291]
gi|226512938|gb|EEH62283.1| LOW QUALITY PROTEIN: twin-argninine leader-binding protein DmsD
[Neisseria gonorrhoeae 1291]
Length = 589
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 19/147 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ L L V LI+ DPPYN + +
Sbjct: 63 KQPVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTETDSF---- 118
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
A D + S + F + L + +LK +G ++V + +L
Sbjct: 119 ------AYNDKF----SHSTWLTFMKNRLEIAKELLKDDGLIFVQCDDKEQAYLKVLLDE 168
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ + + M G + +
Sbjct: 169 TF--TRENFINCIAVKMSEPSGNKMAH 193
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 368 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNENDIVLDYHLGSGT 419
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 420 TAAVAHKMNRQYIGIEQMDYIETLAVERMKK 450
>gi|115289078|gb|ABI85555.1| M.Hin1056ModP-3 [Haemophilus influenzae]
Length = 324
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L + LI+ DPPYN +G Y DKF
Sbjct: 206 ENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKYN-------------DKF- 251
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+ + F + L + +L +G ++V + + ++ L
Sbjct: 252 NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDELFHH 299
>gi|165976230|ref|YP_001651823.1| adenine specific DNA methylase Mod [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165876331|gb|ABY69379.1| adenine specific DNA methylase Mod [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 615
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 22/166 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD- 73
+ I+G ++ VL+ L S+ +I+ DPPYN + + + + A T
Sbjct: 67 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTGEIGE 126
Query: 74 --------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ L R +LK +G +++ + ++ +
Sbjct: 127 DGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLKLLCD 186
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ +G HE ++ + +
Sbjct: 187 EVFGEENFVAELIWDKQHSQQQGLFKTY-HEYVLLYAKNINNHKNI 231
Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 367 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417
>gi|303252811|ref|ZP_07338970.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307247797|ref|ZP_07529833.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|302648241|gb|EFL78438.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306855599|gb|EFM87766.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 615
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 22/166 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD- 73
+ I+G ++ VL+ L S+ +I+ DPPYN + + + + A T
Sbjct: 67 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTGEIGE 126
Query: 74 --------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ L R +LK +G +++ + ++ +
Sbjct: 127 DGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLKLLCD 186
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ +G HE ++ + +
Sbjct: 187 EVFGEENFVAELIWDKQHSQQQGLFKTY-HEYVLLYAKNINNHKNI 231
Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 367 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417
>gi|319957548|ref|YP_004168811.1| DNA methylase n-4/n-6 domain protein [Nitratifractor salsuginis DSM
16511]
gi|319419952|gb|ADV47062.1| DNA methylase N-4/N-6 domain protein [Nitratifractor salsuginis DSM
16511]
Length = 263
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 53/267 (19%), Positives = 100/267 (37%), Gaps = 38/267 (14%)
Query: 15 SIFEWKDKIIKGNSISVLEK--LPAKSVDLIFADPPYNLQLN----GQLYRPDHSLVDAV 68
S + K ++ ++ ++ +P L+ AD PYNL N ++ D +
Sbjct: 13 SNKKIKIRLFN-DNFQNFKRYNIP--RAQLVIADIPYNLGNNAYASNPMWYKDGDRKNGE 69
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVL----KPNG---TLWVIGSYHNIFRIGTMLQNL 121
+ K Y+ + C ++L K G + V ++ I I +
Sbjct: 70 SKKAGKAFFNSDYNFNIAEFFHFCSKLLIKEPKEAGKAPCMIVFCAFEQIPSIVEYAKKH 129
Query: 122 NFWILNDIVWRKSNPMPNFRGRRF---QNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
F + + K+ + H +++ PK N
Sbjct: 130 GFKNSIPLFFIKNYSAQVLKANMRIVGATEHAVILYRDKLPKFN------------NRGR 177
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + R K+ K+HPTQKP LL+ ++ T GD ++DP GSG++
Sbjct: 178 MIYNWMEW-------RRDGKEIPKIHPTQKPVNLLAHLVQLFTDEGDTVIDPVAGSGSTL 230
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
+L R+ G E+ +D +AT+++
Sbjct: 231 RACFELNRNGYGFEVSRDMYRLATEKM 257
>gi|330908667|gb|EGH37181.1| DNA modification methylase [Escherichia coli AA86]
Length = 350
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R +G+E++ D +
Sbjct: 325 RRALGVELESDRFNQT 340
>gi|323161362|gb|EFZ47269.1| DNA methylase family protein [Escherichia coli E128010]
Length = 350
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R +G+E++ + +
Sbjct: 325 RRALGVELESERFNQT 340
>gi|302133240|ref|ZP_07259230.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 363
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/228 (20%), Positives = 72/228 (31%), Gaps = 60/228 (26%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I+ G+ I ++ KLP +SV PPY + V +
Sbjct: 4 LHQILVGDCIDMMRKLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPA 52
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYH------------------------------ 109
+ A RRVL+ +GT+WV
Sbjct: 53 EFIARLVDVFREVRRVLRADGTIWVNMGDSYAGSWGAHGRDDMGVGVSTISQRQVMASQR 112
Query: 110 -----------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+R+ LQ+ +++ DI+W K NPMP R +HE L
Sbjct: 113 KSKATTHAEYKPKDLMGMPWRLAFALQDDGWYLRQDIIWHKPNPMPESTRDRCTKSHEYL 172
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
S SP+ A + V+M D GS+R+ K
Sbjct: 173 FLLSKSPRYYYDQNAIKEPVALSSIVRMAQDIEQQ--HGSDRVPGKSN 218
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ H P L+ +++ G ++LDPF G+GT+ V+ + R I E+ +Y +
Sbjct: 278 KGAHFATFPPDLIRPCILAGAPRGGVVLDPFGGAGTTSLVSMQEGRRSIICELNPEYAAL 337
Query: 261 ATKRIA 266
A RI
Sbjct: 338 ARARID 343
>gi|310779860|ref|YP_003968192.1| Site-specific DNA-methyltransferase (adenine-specific) [Ilyobacter
polytropus DSM 2926]
gi|309749183|gb|ADO83844.1| Site-specific DNA-methyltransferase (adenine-specific) [Ilyobacter
polytropus DSM 2926]
Length = 716
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 24/195 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
++ + ++ IKG+++ VL+ L + + + +I+ DPPYN + G+ D+ A
Sbjct: 125 NSKEENRDSENLYIKGDNLEVLKHLDSGYREKIKMIYIDPPYNTKS-GEFVYNDNRDFSA 183
Query: 68 ----------VTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ D +K SS A+ F L R++L +G +++
Sbjct: 184 KELNKLVRSNIIDEEEKERILKWEGNSSSHSAWLTFMFPRLYLARKLLTEDGVIFISIDD 243
Query: 109 HNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + ++ M + +N AHE L+ S Y
Sbjct: 244 NELAQLKLMCDEIFGEENFIANIAVVNNLKGRSDDEYIATAHENLLIYRKSTSYSTYGIP 303
Query: 168 YDALKAANEDVQMRS 182
D++ +
Sbjct: 304 MPEDYIKEYDLEDCN 318
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
N + K+ D SD G++ +R G K+ +
Sbjct: 397 NKRNEFDIYQKDYLIQNGEQRIVKAKSFWLDKSFSSDA------GTKSVRELFGTKVFSS 450
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQD 256
K +S L K DIILD F GS T+ K R +I ++++++
Sbjct: 451 PKAVDFISYCLSQGIKDEDIILDFFSGSATTSHAVNKLNLEDGGNRKWIMVQLEEE 506
>gi|295107677|emb|CBL05220.1| Adenine specific DNA methylase Mod [Gordonibacter pamelaeae
7-10-1-b]
Length = 647
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 60/171 (35%), Gaps = 19/171 (11%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-- 58
K + + ++ I+G+++ L+ + V I+ DPPYN + +Y
Sbjct: 81 KTMIPEPDKSKDWDTTENLYIEGDNLDALKIMKETYAGKVRFIYIDPPYNTGKDAFIYPD 140
Query: 59 --RPDHSLVDAVTDSW-----------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
R + + + ++D W + + L+ + L +G + +
Sbjct: 141 SFRQNDADYEQLSDEWANGYQMVTNTEGYGKFHSVWCSMIYQRLVLAKDCLSSDGIICIS 200
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR-GRRFQNAHETLIWA 155
H + + + + + +++ + R +N +E ++
Sbjct: 201 IDEHELMNLIKICDEIFGASMRVGIFKWNKTSKAPTLSRYIRNKYEYVLTY 251
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+++ G L KP +L+ ++ +LD F GSGT+ +L R
Sbjct: 391 NEVKDLFGFPLFEYTKPASLVKYLIRMIPDDSFTVLDFFSGSGTTAQAVFELNR 444
>gi|289812099|ref|ZP_06542728.1| site-specific DNA-methyltransferase, component of type III
restriction-modification system [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 152
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK-- 74
K+ +I+G+++ VL+ L V LI+ DPPYN + + + +
Sbjct: 1 KNLMIEGDNLEVLKLLQKSYTGKVKLIYIDPPYNTGKDFVYPDNFQDNMKNYLEITGQTE 60
Query: 75 ------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ + R +L +G +++ H + + ++
Sbjct: 61 EGVRVSTNAETSGRYHTDWLNMMYPRIKLARNLLSDSGFIFISIDEHEVHNLCSLCFEIF 120
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
++ +NP + AHE +
Sbjct: 121 GEENFIALIANTNNPKGRSDDKFIATAHEYI 151
>gi|115289075|gb|ABI85553.1| M.Hin1056ModP-2 [Haemophilus influenzae]
Length = 411
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 19/127 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L + LI+ DPPYN +G Y DKF
Sbjct: 222 ENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKYN-------------DKF- 267
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L + +L +G ++V + + ++ + + V
Sbjct: 268 NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDEVF--GRENFVTTIHCQ 325
Query: 137 MPNFRGR 143
M +G
Sbjct: 326 MSTTQGM 332
>gi|19549035|ref|NP_599080.1| hypothetical protein SfVp48 [Enterobacteria phage SfV]
gi|19483779|gb|AAL89450.1| unknown [Enterobacteria phage SfV]
Length = 350
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYID 259
R +G+E++ + +
Sbjct: 325 RQALGVELESERFN 338
>gi|148658273|ref|YP_001278478.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
RS-1]
gi|148570383|gb|ABQ92528.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
Length = 350
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC--SGSERLRNKDGEKLHPTQKPEALLS 214
S Y F + D + S G R+ + H + P L S
Sbjct: 229 RSVDEFEYIFFFWKPGVTKFDRRRLSSDEWRDWGSRGVWRIPSVRSNDDHEAKFPVELPS 288
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
R + T PGDI+LD F GSGT+ A + R +IGI++ Q Y+D+A I ++
Sbjct: 289 RAIKLLTDPGDIVLDCFIGSGTTAIAAIRAGRRYIGIDILQKYVDLARNNIRRELQQISM 348
Query: 275 EL 276
E+
Sbjct: 349 EI 350
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 22/135 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D I G++ +L ++ S+ L PPY + + + SF+
Sbjct: 43 DNIYCGDARQLLPQIEPNSIALSVWSPPYFVGKEYEEHL-----------------SFDE 85
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ R + ++KP G L + NI I I + V RK +P+
Sbjct: 86 WKDLLRTVIHLHFPIIKPGGFLVI-----NIADILVFKDPHMPRIQAEAVNRKRSPVTRE 140
Query: 141 RGRRFQNAHETLIWA 155
R H
Sbjct: 141 DILRAIEQHPDFNRY 155
>gi|284097643|ref|ZP_06385677.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
WGA-A3]
gi|283830846|gb|EFC34922.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
WGA-A3]
Length = 142
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKP 223
+ + + + M + + +G + +++ HP P L R + +
Sbjct: 19 YKDQWKKTSGSGESDMNREEFMEWTNGLWTFPGESKKRIGHPAPFPIELPRRCIKLFSYV 78
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
GD +LDPF GSGT+ A +R IGIE+ +DY +A RI
Sbjct: 79 GDTVLDPFMGSGTTLVAACANKRYGIGIEVDRDYCKLAKDRI 120
>gi|227875076|ref|ZP_03993221.1| adenine specific DNA methylase [Mobiluncus mulieris ATCC 35243]
gi|304390319|ref|ZP_07372272.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|306817363|ref|ZP_07451108.1| adenine specific DNA methylase [Mobiluncus mulieris ATCC 35239]
gi|227844354|gb|EEJ54518.1| adenine specific DNA methylase [Mobiluncus mulieris ATCC 35243]
gi|304326075|gb|EFL93320.1| adenine specific DNA methylase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304649804|gb|EFM47084.1| adenine specific DNA methylase [Mobiluncus mulieris ATCC 35239]
Length = 545
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 11/172 (6%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ ++ S + + ++ II G+++ L+ L VD I+ DPPYN G +
Sbjct: 24 LDRQYSYDEHGQHDGDNGSQNMIIHGDNLEALKALLPKYEGKVDCIYIDPPYNTGNEGWI 83
Query: 58 Y-------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
Y R L + V + S + + L R+L NG + V S
Sbjct: 84 YNDAVNDPRIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLRLLHRLLARNGLIAVSISDTE 143
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ +G ++ +S P + HE +++ + ++
Sbjct: 144 LSNLGCIMDEIFGPANRLACAPVRSEPSGGKDKTALRTGHEYILFYTKGDQS 195
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 11/131 (8%)
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-----RLRNKDGEK 202
AH P G T + + + + G+ ++ G K
Sbjct: 280 AHWEKTSYDPGVVVDGETERWVPYEKIRDVKKSFGWNTWLDGYGTNADATAVIKAIFGNK 339
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQD 256
T KP +L+ I+ I+LD F GSGT+ R FI +E+
Sbjct: 340 KFDTPKPLSLIEWIIALHGNTDGIVLDSFAGSGTTAHAVLNSNMYDDADRKFILVELSDY 399
Query: 257 YIDIATKRIAS 267
I +R+
Sbjct: 400 AESITAERVKR 410
>gi|153869323|ref|ZP_01998963.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
gi|152074153|gb|EDN71039.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
Length = 194
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 8 AINENQNSIFEWKDKI-IK-GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
+ +N+ + + I IK G++I + + + S+DLI ADPPYNL + ++ +
Sbjct: 3 ILMQNRRDGSKMNNHIEIKPGDAIDLFQDIKDDSIDLIIADPPYNLGKDY----GNNHDL 58
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
A D Y F++ WL +RVLKP GT++V I + ++
Sbjct: 59 KAFDD----------YINFSKKWLSQAKRVLKPTGTIYVFMGVKFISYLYNIMDRELNLC 108
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
N + + F H+ ++ + K Y FN DA++ + + +++
Sbjct: 109 FNSWICWHYTQGMG-KTMGFSPRHDDILMFNK---TKTYVFNLDAIRIPQKYYRAKNNMR 164
Query: 186 IPICSGSERLRNKD----GEKLHPTQ 207
+ + HPT+
Sbjct: 165 GANPGDVWEFSHIHYCHENRQNHPTK 190
>gi|323174398|gb|EFZ60023.1| DNA methylase family protein [Escherichia coli LT-68]
Length = 352
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +++ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPADMLRQMITASSRPGDLVADFFMGSGSTVKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ + +
Sbjct: 325 RRAIGVELEAERFEQT 340
>gi|307263068|ref|ZP_07544690.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|306871694|gb|EFN03416.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 469
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 60/185 (32%), Gaps = 22/185 (11%)
Query: 2 SQKNSLAINENQNSI---FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG 55
+L +++ NS + + I+G+S+ L+ L + + +I+ DPPYN
Sbjct: 24 PSGKALTEDKDHNSEPVNKDSANIFIEGDSLDALKLLQSSYSGLIKMIYIDPPYNTGKRF 83
Query: 56 ---------------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
L + + + K S A+ F L R +LK +G
Sbjct: 84 IYPDKFSWAADELAIALGVSNAEAERIIKTTKPKHLSHSAWLTFMYPRLHLARNLLKDDG 143
Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ + ++ + + +G HE ++ + +
Sbjct: 144 VIFISIDDNEQAQLKLLCDEVFGEENFVAELIWDKQHSQQQGLFKTY-HEYVLLYAKNIN 202
Query: 161 AKGYT 165
Sbjct: 203 NHKNI 207
Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 343 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 393
>gi|294013138|ref|YP_003546598.1| adenine-specific DNA-methyltransferase [Sphingobium japonicum
UT26S]
gi|292676468|dbj|BAI97986.1| adenine-specific DNA-methyltransferase [Sphingobium japonicum
UT26S]
Length = 646
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 45/212 (21%)
Query: 17 FEWKDKIIKGNSISVL-EKLPAKSVDLIFADPP------YNLQLNGQLYRPDHSLVDAVT 69
+++ G+++ ++ KL +SVDLI+ DPP YNL +P V A
Sbjct: 93 SNSLNRLYYGDNLDIMQNKLGLESVDLIYLDPPFKSDTNYNLMYRNLTGKPVPEQVHAFA 152
Query: 70 DSWD--------------------------KFSSFE------------AYDAFTRAWLLA 91
D+W+ +F + AY + +L
Sbjct: 153 DTWEFDAEKERIAREIPTLMIQQGIDPDAVQFWTLWVDALRKTNRELLAYLIYMVQRMLF 212
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
+ +LK G++++ I M+ + + +R+ H+
Sbjct: 213 MKSILKRTGSIYLHCDPTASHYIKVMMDAIFGHDNFRNEIIWKRTGSHGGSKRWGPVHDV 272
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+++ + S K + K+ +D SD
Sbjct: 273 ILFYTKSSKYTWNRVFQEYEKSYLDDFYRFSD 304
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ +PTQKP LL RI+ +S+ PGD++ DPF G GT+ A K R +IG ++ I
Sbjct: 412 NERLGYPTQKPVPLLDRIIQASSNPGDVVFDPFCGCGTTIYSAVKNERRWIGCDIAILPI 471
Query: 259 DIATKRIASVQ 269
+ T ++A
Sbjct: 472 QMVTTQLAERH 482
>gi|153806906|ref|ZP_01959574.1| hypothetical protein BACCAC_01182 [Bacteroides caccae ATCC 43185]
gi|149131583|gb|EDM22789.1| hypothetical protein BACCAC_01182 [Bacteroides caccae ATCC 43185]
Length = 254
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 34/238 (14%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LI AD PYNL +G + DK + F
Sbjct: 24 KAQLIIADVPYNLGNSAYASNPSWYVDGDNKNGESDKAGKEFFDTDKDFRPAEFMHFCSQ 83
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + + + + FR + + ++V+RK+ +
Sbjct: 84 MLVKEPKEKGKAPCMIIFCEFEDQFRYIELGKRYGLNNYINLVFRKNFSAQVLKANM--- 140
Query: 148 AHETLIWASPSPKAKGYT---FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
Y + K N+ + + + + + + K+H
Sbjct: 141 ---------KIVGNCEYGLLLYRDKLPKFNNDGRMIFNCFDWVV--------DNETPKVH 183
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
TQKP LL R++ T GD+++DP GSG++ A +L R G E+K+ + A
Sbjct: 184 STQKPVPLLRRLIEIFTDKGDVVIDPCAGSGSTLLAAAQLGRRAYGFEIKKKFFADAN 241
>gi|115289042|gb|ABI85531.1| M.Hin1056ModP-2 [Haemophilus influenzae]
Length = 409
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 19/127 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L + LI+ DPPYN +G Y DKF
Sbjct: 218 ENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKYN-------------DKF- 263
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L + +L +G ++V + + ++ + + V
Sbjct: 264 NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDEVF--GRENFVTTIHCQ 321
Query: 137 MPNFRGR 143
M +G
Sbjct: 322 MSTTQGM 328
>gi|194426854|ref|ZP_03059407.1| DNA methylase [Escherichia coli B171]
gi|194415190|gb|EDX31459.1| DNA methylase [Escherichia coli B171]
Length = 350
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDMVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R +G+E++ + +
Sbjct: 325 RRALGVELESERFNQT 340
>gi|313145659|ref|ZP_07807852.1| type III restriction-modification system [Bacteroides fragilis
3_1_12]
gi|313134426|gb|EFR51786.1| type III restriction-modification system [Bacteroides fragilis
3_1_12]
Length = 608
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 61/185 (32%), Gaps = 19/185 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG------------ 55
E + + ++ I+G+++ ++ L VD+I+ DPPYN +
Sbjct: 38 EESRNWEQTQNLYIEGDNLDAMKLLKKSYAGKVDVIYIDPPYNTGKDFIFNDTFALSQEE 97
Query: 56 ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ R + ++ + + A L+ +L NG +++ H +
Sbjct: 98 SDEKQGRYNEEGQRLFQNTEANGKFHSDWCSMMYARLMLAHTLLNDNGIIFISIDDHELA 157
Query: 113 RIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + N D+ P ++ + E ++ +
Sbjct: 158 NLIKIGNEVFNASNFIDVFNWAKTETPENLSKKSKQIIEYIVCYQKKKNDMKFQGLKKES 217
Query: 172 KAANE 176
++N
Sbjct: 218 VSSNG 222
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 12/129 (9%)
Query: 201 EKLHPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+K+ KP +L+ + + I++D F GSGT+ ++ + K YI
Sbjct: 348 KKVFNFPKPVSLIQYLCEFIDTKNKDCIVMDFFSGSGTTAEAVMRMNMKPR--KNKVKYI 405
Query: 259 ------DIATKRIASVQPLGNIELTVLTGKRTEPRVAFN--LLVERGLIQPGQILTNAQG 310
D+ + P + TE A N L + + + G +
Sbjct: 406 LVQLPEDVTETIKKAKTPSEKEIMQNAIDFLTEKHKALNICELSKERIRRAGDTIEAECN 465
Query: 311 NISATVCAD 319
+ D
Sbjct: 466 QLKLKNRPD 474
>gi|300741960|ref|ZP_07071981.1| site-specific DNA-methyltransferase (adenine-specific) [Rothia
dentocariosa M567]
gi|300381145|gb|EFJ77707.1| site-specific DNA-methyltransferase (adenine-specific) [Rothia
dentocariosa M567]
Length = 675
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 75/180 (41%), Gaps = 25/180 (13%)
Query: 21 DKIIKGNSI----------SVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVD--- 66
+++I G+++ L +DLI+ DPP++ + + + + +D
Sbjct: 65 NRLIYGDNLLAMAALLAGDEDSPSL-RGKIDLIYIDPPFDSKADYRTKIKLPGTTIDQKP 123
Query: 67 ------AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
A +D+W +Y A L+ R +L G+++V Y + +L
Sbjct: 124 TVLEQFAYSDTW--SDGTASYVAMIVPRLVLMRELLAETGSIYVHIDYRVAHYLKIILDE 181
Query: 121 LNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ +N+++W + + + ++F +H+T+ + +PK + + A +N+
Sbjct: 182 VFGRESFVNEVIWPGAIGDSSAKNKKFIKSHDTIFFYRKNPKKIVWNEVFQAHAGSNKKR 241
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
K + TQKP LL RI+ +S+ GD++ D F GSGT+ AVA++L R ++ ++ +
Sbjct: 327 KGETTGYGTQKPGRLLERIIQASSDEGDLVADFFVGSGTTAAVAERLGRRWVVTDLGKPS 386
Query: 258 IDIATKRIASVQPLG 272
I KR+
Sbjct: 387 TMIVRKRLIDQDAKP 401
>gi|242309402|ref|ZP_04808557.1| modification methylase HhaII [Helicobacter pullorum MIT 98-5489]
gi|239523973|gb|EEQ63839.1| modification methylase HhaII [Helicobacter pullorum MIT 98-5489]
Length = 213
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 25/227 (11%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ +++L+ L + S+DL F DP Y L+ Y + + + + + +
Sbjct: 9 DGLTLLKSLESASIDLCFFDPQYRGVLDKMRYGNEGERQKG------RSALIQMSEESIK 62
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
++++ RVLKP+ L + ++ + + D++ M
Sbjct: 63 SFIIEINRVLKPSCYLMLWIDKFHLCEGVGAWLDSTLLQIVDLITWDKGKMG-------- 114
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
+ K Y + E L +K+ K HP
Sbjct: 115 -------MGYRTRKQSEYLLVIQKKPIKAKGTWKLHTIRDVC---HEPL-SKEELKAHPH 163
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
KP+ L ++ S T GD++ DP GS + K+L R FIG +
Sbjct: 164 SKPKKLQKMLIESCTNKGDLVCDPAAGSFSVFECCKELERDFIGTNL 210
>gi|133757378|ref|YP_001096258.1| hypothetical protein pLEW279b_p16 [Corynebacterium sp. L2-79-05]
gi|110084153|gb|ABG49307.1| hypothetical protein [Corynebacterium sp. L2-79-05]
Length = 633
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/213 (11%), Positives = 60/213 (28%), Gaps = 21/213 (9%)
Query: 17 FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN-------GQLYRPDHSLVD 66
+ ++ I G+++ L+ L + ++ DPPYN D
Sbjct: 92 KDSENIYIVGDNLDALKHLKNSYKGQIKCVYIDPPYNTGKGDFAYNDTFGFTIKDLVEKV 151
Query: 67 AVTD-------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ + +S A+ F L+ R +L G ++ + + +
Sbjct: 152 GLDEGEAERVLDLQGRASHSAWLTFMLPRLIIARELLASEGVFFISVDDNEQGNLRLICD 211
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG---YTFNYDALKAANE 176
+ + F HE ++ + ++
Sbjct: 212 EIFHENNFVAQIVRKGTGGKQDSTHFAAKHEYVLAYAKDFNQAQLGLDIVENRIYPHVDD 271
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
D + L+ ++R ++ +P P
Sbjct: 272 DGRAYRTQLLRKWGDNDRREDRSNL-YYPIPAP 303
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 202 KLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLR 245
K KP + ++L + GDIILD F GSG++ A +L
Sbjct: 386 KPFKYPKPVGFVKQLLKRAGLDSGDIILDFFSGSGSTAHAAYRLG 430
>gi|291566458|dbj|BAI88730.1| methyltransferase [Arthrospira platensis NIES-39]
Length = 382
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ + V+++LP+ S D PPY + F+ Y
Sbjct: 53 LLLLGDVLEVMKELPSDSFDCCMTSPPYWGKREYD------------AGGIGWEPDFKTY 100
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN---------LNFWILNDIVWR 132
+ RVLK G+ W+ + L + + N ++W
Sbjct: 101 VDNLCSVFSEVHRVLKKTGSFWLNIGDSYYHKNLLGLPWRIALNLTDNQGWILRNSVIWN 160
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
K P+ R +N HE L SPK
Sbjct: 161 KVKGGPDHSKDRLRNIHENLFHFVKSPKYYY 191
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+LH P L + S+ P II+DPF G+GT+ VA+ L R GI++ Y++I
Sbjct: 314 RELHFAPYPVDLCKIPISSTCPPNGIIIDPFCGTGTTMLVAQLLGRKSCGIDISHHYLEI 373
Query: 261 ATKR 264
A R
Sbjct: 374 AKAR 377
>gi|284053520|ref|ZP_06383730.1| DNA methylase N-4/N-6 domain protein [Arthrospira platensis str.
Paraca]
gi|78773884|gb|ABB51231.1| methyltransferase [Arthrospira platensis]
Length = 375
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ + V+++LP+ S D PPY + F+ Y
Sbjct: 46 LLLLGDVLEVMKELPSDSFDCCMTSPPYWGKREYD------------AGGIGWEPDFKTY 93
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN---------LNFWILNDIVWR 132
+ RVLK G+ W+ + L + + N ++W
Sbjct: 94 VDNLCSVFSEVHRVLKKTGSFWLNIGDSYYHKNLLGLPWRIALNLTDNQGWILRNSVIWN 153
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
K P+ R +N HE L SPK
Sbjct: 154 KVKGGPDHSKDRLRNIHENLFHFVKSPKYYY 184
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+LH P L + S+ P II+DPF G+GT+ VA+ L R GI++ Y++I
Sbjct: 307 RELHFAPYPVDLCKIPISSTCPPNGIIIDPFCGTGTTMLVAQLLGRKSCGIDISHHYLEI 366
Query: 261 ATKR 264
A R
Sbjct: 367 AKAR 370
>gi|15828868|ref|NP_326228.1| type III restriction-modification system: methylase [Mycoplasma
pulmonis UAB CTIP]
gi|14089811|emb|CAC13570.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
pulmonis]
Length = 565
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 18/155 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E E + IIKGN++ L L V LI+ DPPYN +
Sbjct: 164 EENIEFNENDNLIIKGNNLIALSSLLERYEGKVKLIYIDPPYNTGND------------- 210
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWIL 126
+ +++ + + F + L R++LK +G ++V + + ++ +
Sbjct: 211 -SFNYNDSFNHSTWLTFMKNRLELARKLLKEDGVIFVQCDDNEQAYLKVLMDDIFGVNKF 269
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
P + + E ++ + + +
Sbjct: 270 IANFMWMKTSTPPSLSKNVRKKLEYILCYTKNSIS 304
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ + + KPE+L+ ++ +T D++LD GSGT+ AVA K+ R +IGIE
Sbjct: 439 NKKTIFNFPKPESLIHYLVNMNTNKNDLVLDFNLGSGTTTAVAHKMGRKYIGIEQMDYIQ 498
Query: 259 DIATKRIAS 267
+I +R+
Sbjct: 499 NITIERMKK 507
>gi|224023444|ref|ZP_03641810.1| hypothetical protein BACCOPRO_00144 [Bacteroides coprophilus DSM
18228]
gi|224016666|gb|EEF74678.1| hypothetical protein BACCOPRO_00144 [Bacteroides coprophilus DSM
18228]
Length = 633
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/217 (14%), Positives = 69/217 (31%), Gaps = 27/217 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG--- 55
++ N+L N+ + K+ I G+++ L+ L S+ I+ DPPYN +
Sbjct: 81 AEHNNLPENK------DSKNIYISGDNLDALKHLLKSYAGSIKCIYIDPPYNTGSDDFVY 134
Query: 56 -------------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
+L + + + ++ A+ F LL R +L +G +
Sbjct: 135 TDSFNFTVEELASKLSISEEQASRVLDLTRRGSATHSAWLMFMLPRLLLARDLLSKDGVI 194
Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIV-WRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
++ + + + ++ + R++ F H+ + +
Sbjct: 195 FISIDDNEQSNLKLLCDDIFGEENFLSILARRTKSGGGSAADSFAVEHDYICAYARDINY 254
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
G F + + ER K
Sbjct: 255 GGKLFIPFTEEYLK-RYSEEDEHGKYFWDTMERSSTK 290
>gi|218703091|ref|YP_002410720.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia coli IAI39]
gi|218373077|emb|CAR20969.1| putative DNA adenine methyltransferase ( DNA methylase) from phage
origin [Escherichia coli IAI39]
Length = 351
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 13 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 58
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 59 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 117
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 118 KESLRAYF 125
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 268 YTDVWMHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 325
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R +G+E++ + + K I
Sbjct: 326 RLALGVELESERFNQTVKEINE 347
>gi|145978|gb|AAA23784.1| 'ORF2' [Escherichia coli]
Length = 100
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 14/97 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
II G++++ L+ +PA+SVDLIFADPPYN+ N D + ++W + + +
Sbjct: 16 TIIHGDALAELKNIPAESVDLIFADPPYNIGKN----------FDGLIEAWKE----DLF 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + C RVLK G+++++ S N+ I
Sbjct: 62 IDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQC 98
>gi|227505796|ref|ZP_03935845.1| site-specific DNA-methyltransferase [Corynebacterium striatum ATCC
6940]
gi|227197605|gb|EEI77653.1| site-specific DNA-methyltransferase [Corynebacterium striatum ATCC
6940]
Length = 266
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 53/261 (20%), Positives = 90/261 (34%), Gaps = 31/261 (11%)
Query: 39 SVDLIFADPPYNLQLN----GQLYRPDHSLVDAVTDSWDK--FSSFEAYD--AFTRAWLL 90
LI AD PYNL +N + + ++ K F + + + F
Sbjct: 18 KAQLICADIPYNLGVNAYGSNPKWYVGGDNKNGESELAGKQFFDTDKDFRVPEFMHFASR 77
Query: 91 ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
R+ K G + V ++ + + + F ++V+RK + +
Sbjct: 78 MLRKEPKERGQAPAMIVFCAFDQQWALIEEAKKYGFNHYINLVFRKPSSPQVLKANMKVV 137
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
NA LI+ K N + + K+HP
Sbjct: 138 GNAEYALIFY-----------RNKLPKFRNHGRMVMNIMDWAR-------DGSHIPKVHP 179
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKP AL+ R++ T P D+++DP GSG + A+ L R G E+K+D+ +
Sbjct: 180 TQKPVALMERLIDLFTDPDDVVIDPCAGSGATLVAAENLGRKSYGFEIKKDFCQAFENEM 239
Query: 266 ASVQPLGNIELTVLTGKRTEP 286
T +P
Sbjct: 240 RHAVTPALTFGTDPQPIIAQP 260
>gi|297374640|emb|CBL42927.1| DNA methylase N-4/N-6 domain protein [Candidatus Magnetobacterium
bavaricum]
Length = 262
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + + + +PTQKP ALL RI+++S+ GD++LDPF G GT+
Sbjct: 1 MEEGVAIDNVWDIDKLNSSAKERLGYPTQKPIALLERIIMASSNEGDLVLDPFCGCGTTV 60
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
A+KL R +IGI++ ++ R+A +
Sbjct: 61 TAAQKLNRQWIGIDITHLATNLIKLRLADM 90
>gi|167851675|ref|ZP_02477183.1| Site-specific DNA-methyltransferase (adenine-specific)
[Burkholderia pseudomallei B7210]
Length = 663
Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/217 (11%), Positives = 63/217 (29%), Gaps = 23/217 (10%)
Query: 13 QNSIFEWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
++ +W+ + +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 88 ESESVDWETTQNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDSYQDSIQ 147
Query: 67 AV--------------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+++ + L+ + +L +G
Sbjct: 148 NYLELTAQTESGRRVSSNTEASGRFHTNWLGMLYPRLILAKSLLSTDGLFICSIDDCEAP 207
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
R+ + + + + + HE ++ + A + D
Sbjct: 208 RLRMLCDEIFGEENFLAQLTWRSDGNFDNQAKVKVCHEYVVMYARDLDAFPHPPVVDPSV 267
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ + + +G +N P P
Sbjct: 268 PPDSKLFRPEIRNTIVKNGP---KNPVSAITLPAGFP 301
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
KP LLS ++ I LD F GSGT G + R F+ ++
Sbjct: 416 PKPVELLSYLIQMVESRDGIFLDFFAGSGTLGHAVLRQNALDGGKRRFVMAQL 468
>gi|332674142|gb|AEE70959.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
Length = 112
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQK L+ +I+ T P DI+LDPF GSGT+G K+L+R+FIGIE +++Y IA K
Sbjct: 48 HPTQKSLTLMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQIAKK 107
Query: 264 RIASV 268
R+
Sbjct: 108 RLNLF 112
>gi|323972445|gb|EGB67652.1| DNA methylase [Escherichia coli TA007]
Length = 350
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINSDCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R +G+E++ + +
Sbjct: 325 RRALGVELESERFNQT 340
>gi|307261295|ref|ZP_07542970.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306869026|gb|EFN00828.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 449
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 22/166 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD- 73
+ I+G ++ VL+ L S+ +I+ DPPYN + + + + A T
Sbjct: 67 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTGEIGE 126
Query: 74 --------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ L R +LK +G +++ + ++ +
Sbjct: 127 DGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLKLLCD 186
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ +G HE ++ + +
Sbjct: 187 EVFGEENFVAELIWDKQHSQQQGLFKTY-HEYVLLYAKNINNHKNI 231
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 367 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 417
>gi|260580144|ref|ZP_05847974.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
RdAW]
gi|260093428|gb|EEW77361.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
RdAW]
Length = 763
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 21/165 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + + ++ IIKGN++ L L V LI+ DPPYN +G Y
Sbjct: 238 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN- 296
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF + + F + L + +L +G ++V + ++ +
Sbjct: 297 ------------DKF-NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDIEQAYLKILMDD 343
Query: 121 LNFWILNDIVWRKSNPMPNFR----GRRFQNAHETLIWASPSPKA 161
+ + + G+ +++ E + S + +
Sbjct: 344 IFDRDNFLNIVTVKTKIGGVSGSSEGKSLKDSTEFINVFSKNRER 388
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KPEALL RI+ +TK GDI+LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 569 KKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLK 628
Query: 267 S 267
Sbjct: 629 K 629
>gi|320172932|gb|EFW48161.1| putative DNA methylase [Shigella dysenteriae CDC 74-1112]
gi|332083675|gb|EGI88893.1| DNA methylase family protein [Shigella dysenteriae 155-74]
Length = 350
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWMHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R +G+E++ + + K I
Sbjct: 325 RRALGVELESERFNQTVKEINE 346
>gi|330818700|ref|YP_004362405.1| Site-specific DNA-methyltransferase [Burkholderia gladioli BSR3]
gi|327371093|gb|AEA62449.1| Site-specific DNA-methyltransferase [Burkholderia gladioli BSR3]
Length = 383
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 18/156 (11%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV-------- 68
K+ +I+G+++ VL+ L V LI+ DPPYN + V
Sbjct: 98 KNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGTDFVYPDSFQDSVANYLRLTGQIS 157
Query: 69 ------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+++ A+ + L+ +G L V + + T++ L
Sbjct: 158 GGAPVSSNTESSGRFHTAWLNMIYPRVKLAWNFLRADGFLLVSIDDKELAHLRTVMNEL- 216
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
N I + + HE ++ + +
Sbjct: 217 CGEENFIATLVFDRNRKNDAKLVSVGHEYMVLYAKN 252
>gi|326336473|ref|ZP_08202643.1| modification methylase HpaI [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691346|gb|EGD33315.1| modification methylase HpaI [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 297
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 60/314 (19%), Positives = 97/314 (30%), Gaps = 89/314 (28%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ +++ V+ L +S+D+I DPPY N +L RP FE +
Sbjct: 5 QLYNADNLEVMATLADESIDVICIDPPYLYLKNQKLERP-----------------FEEH 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F C+R+L G + + G + +R TML L F +++W K
Sbjct: 48 KFF-----AECKRLLTKKGFIVMFGRGTSFYRWNTMLDGLGFVFKEEVIWNKGFSTAPT- 101
Query: 142 GRRFQNAHETLIWASPSPKAKG----------YTFNYDA--------------------- 170
Q HET+ + + N D
Sbjct: 102 -LPIQRFHETIAIYTKEKGSINADVKVPYLEVKQHNIDTLVGDINRIKSALNNTKELDYM 160
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ----------------------- 207
+ S SG +N G PT
Sbjct: 161 KEYLRTGHINISKKRNDKTSGCTISKNSIGIFSIPTMCLKAIKEGMRERSIIKVNYERFN 220
Query: 208 ------KPEALLSRILVSSTKPGD-----IILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
KP LL R+L ++ D F GS + V + I E+ ++
Sbjct: 221 RLHPTQKPVRLLERLLALVIPKDKPLNEIVVADFFAGSMSCMEVVYNMGMKGIATEIDKE 280
Query: 257 YIDIATKRIASVQP 270
Y + +RI ++QP
Sbjct: 281 YFEKGKQRIENLQP 294
>gi|55822847|ref|YP_141288.1| type III restriction-modification system methylation subunit
[Streptococcus thermophilus CNRZ1066]
gi|55738832|gb|AAV62473.1| type III restriction-modification system methylation subunit
[Streptococcus thermophilus CNRZ1066]
Length = 646
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 18/162 (11%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
+Q ++ NE + E + IIKGN++ L L + V I+ DPPYN + Y
Sbjct: 174 AQHSTAVDNEIVSFDKEKDNLIIKGNNLLALHALKNEFAGKVRQIYIDPPYNTGKDSFNY 233
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
DKF + ++ F + L +L +GT+W+ + + +
Sbjct: 234 N-------------DKF-NHSSWLVFMKNRLEIAWELLSDDGTIWISIDGYESHYLKVLA 279
Query: 119 Q-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
D V + P + F +H+ ++ + +
Sbjct: 280 DGIFGAENFLDEVVWQRAYAPINLKKTFSKSHDYILVYAKNN 321
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ V ++ W ++ + + DG+ T KPE L+ RIL + D++LD
Sbjct: 421 KDGVVAQTLWTYQEVGHNQDAKKEIKSLFDGQTAFGTPKPEKLIQRILTLGSDENDLVLD 480
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
F GS T+ AVA K+ R FIGIE ++ R+
Sbjct: 481 FFMGSATTQAVAMKMNRRFIGIEQMDYISTVSVPRLQK 518
>gi|119715324|ref|YP_922289.1| DNA methylase N-4/N-6 domain-containing protein [Nocardioides sp.
JS614]
gi|119535985|gb|ABL80602.1| DNA methylase N-4/N-6 domain protein [Nocardioides sp. JS614]
Length = 540
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 24/199 (12%)
Query: 21 DKIIKGNSISVLEKL---------PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ + G+S+ VL L V L++ DPP+N +
Sbjct: 59 NLLFTGDSLDVLRILTTVPEYARHYKGKVRLVYIDPPFNTGQAFE--------------H 104
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
+D + + +F R L R +L P+G++WV + +L V
Sbjct: 105 YDDWLEHATWLSFMRDRLRQIRELLTPDGSVWVHLDDAEAHHMRVLLDEVFGPANFLGNV 164
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
K P + H+ L+ + + +D P
Sbjct: 165 AWKRRNDPRNTAQFISADHDQLLIYGRDAARARFNKLERTEAMDSAYTNPDNDERGPWRR 224
Query: 191 GSERLRNKDGEKLHPTQKP 209
G RN + P
Sbjct: 225 GDLAARNFYSRGTYAITTP 243
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 176 EDVQMRSDWLIPIC----SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
S W +G E +R G+ + T KPE LL R+L + PGD++LD F
Sbjct: 294 GGRVPSSVWHPEEVGFVRNGKEEVRALVGD-VFATPKPERLLERVLHIGSDPGDVVLDCF 352
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASVQPLGN 273
GSGT+ AVA K+ R +I E+ + + + R+ V +
Sbjct: 353 AGSGTTAAVAHKMGRRWITAEVLGETVKEFTRPRLELVVKGED 395
>gi|260654820|ref|ZP_05860308.1| adenine specific DNA methylase Mod [Jonquetella anthropi E3_33 E1]
gi|260630535|gb|EEX48729.1| adenine specific DNA methylase Mod [Jonquetella anthropi E3_33 E1]
Length = 524
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 27/206 (13%)
Query: 1 MSQKNSLAINENQNS----IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL 53
+ + + I + + S ++ II G+++ L+ L + V I+ DPPYN
Sbjct: 16 IKIEPRILIEDKEKSNCTNDQNTENMIIHGDNLLALKALESKYAGKVKCIYIDPPYNTGS 75
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ Y D + + L + +L+ +G ++V
Sbjct: 76 AFERY--------------DDNLEHSTWLSLMNCRLHSLYTLLRKDGFMFVNLDEQEHAY 121
Query: 114 IGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY--- 168
+L ++ + D++W+K N R H+ ++ + + + +
Sbjct: 122 AKILLDSIFGRHNFIGDMIWKKRKGGGNDS-RYLALDHDYILVYAKDASKETHPRKWKTV 180
Query: 169 DALKAANEDVQMRSDWLIPICSGSER 194
+ + ++ D R
Sbjct: 181 QSEEYLKRYKEIEVDGRRYYWDTVAR 206
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K P KPE L++RIL ST+P D++LD F GSGT+ AVA+K+ R +IGIEM
Sbjct: 292 KKAFPYPKPEKLIARILDLSTEPNDLVLDSFLGSGTTCAVAQKMNRRYIGIEMGDHAYTH 351
Query: 261 ATKRIASVQPLGNI 274
R+ V +
Sbjct: 352 CKVRLDKVIDGSDQ 365
>gi|148609438|ref|YP_001272569.1| putative DNA methylase [Phage cdtI]
gi|148524767|dbj|BAF63389.1| putative DNA methylase [Phage cdtI]
gi|309704853|emb|CBJ04205.1| predicted methyltransferase [Escherichia coli ETEC H10407]
gi|324020455|gb|EGB89674.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
Length = 350
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWMHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R +G+E++ + + K I
Sbjct: 325 RRALGVELESERFNQTVKEINE 346
>gi|331681946|ref|ZP_08382579.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
gi|294490683|gb|ADE89439.1| DNA methylase [Escherichia coli IHE3034]
gi|331081148|gb|EGI52313.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
Length = 353
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWMHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R +G+E++ + + + I+
Sbjct: 325 RRALGVELETERFNQTIQEISM 346
>gi|109947917|ref|YP_665145.1| adenine specific DNA methylase [Helicobacter acinonychis str.
Sheeba]
gi|109715138|emb|CAK00146.1| adenine specific DNA methylase [Helicobacter acinonychis str.
Sheeba]
Length = 614
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 28/167 (16%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY----RPDHSLV------- 65
K+ II G+++ L+ L ++ + +++ DPPYN +Y R D+ +
Sbjct: 91 KNAIIIGDNLDALKLLKPAYSEKIKMVYIDPPYNTTNENFIYPDNFRQDYKKILEEVGLI 150
Query: 66 ------DAVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ V KF + + +F L R +LK +G +++ +
Sbjct: 151 EIDENGEEVESESLKFFKNIQGSRTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNEQA 210
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + RK+ N HE L+ + +
Sbjct: 211 NLKLLCDEIFGEGNFVADFIRKTKSTTNDAKIGVNYQHEFLLCYAKN 257
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
Y + K + + + + + E LR + E K +++I+ +T+
Sbjct: 353 RYLKDLKTTKKTFDSLIFSDNCYMNQAATKELLRLELAE-YFSYPKGVDFMAKIIEHATE 411
Query: 223 PGDIILDPFFGSGTSGAVAK------KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
GDIILD F GSGT+ K R FI +++ ++ I + +
Sbjct: 412 KGDIILDFFAGSGTTAHAVMELNAEDKGNREFILVQIDEE--------IKEDKNKSAYDF 463
Query: 277 TVLTGKRTEPRVA 289
K +P ++
Sbjct: 464 CQNDLKSAKPVIS 476
>gi|55820925|ref|YP_139367.1| type III restriction-modification system methylation subunit
[Streptococcus thermophilus LMG 18311]
gi|55736910|gb|AAV60552.1| type III restriction-modification system methylation subunit
[Streptococcus thermophilus LMG 18311]
Length = 641
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 18/162 (11%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
+Q ++ NE + E + IIKGN++ L L + V I+ DPPYN + Y
Sbjct: 169 AQHSTAVDNEIVSFDKEKDNLIIKGNNLLALHALKNEFAGKVRQIYIDPPYNTGKDSFNY 228
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
DKF + ++ F + L +L +GT+W+ + + +
Sbjct: 229 N-------------DKF-NHSSWLVFMKNRLEIAWELLSDDGTIWISIDGYESHYLKVLA 274
Query: 119 Q-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
D V + P + F +H+ ++ + +
Sbjct: 275 DGIFGAENFLDEVVWQRAYAPINLKKTFSKSHDYILVYAKNN 316
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ V ++ W ++ + + DG+ T KPE L+ RIL + D++LD
Sbjct: 416 KDGVVAQTLWTYQEVGHNQDAKKEIKSLFDGQTAFGTPKPEKLIQRILTLGSDENDLVLD 475
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
F GS T+ AVA K+ R FIGIE ++ R+
Sbjct: 476 FFMGSATTQAVAMKMNRRFIGIEQMDYISTVSVPRLQK 513
>gi|324117943|gb|EGC11842.1| DNA methylase [Escherichia coli E1167]
Length = 350
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWMHNPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R +G+E++ + + K I
Sbjct: 325 RRALGVELESERFNQTVKEINE 346
>gi|308061353|gb|ADO03241.1| type II DNA modification enzyme [Helicobacter pylori Cuz20]
Length = 346
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 54/333 (16%), Positives = 104/333 (31%), Gaps = 77/333 (23%)
Query: 16 IFEWKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ E ++ +I+ + L L +DLI+ DPP+ + + + + +
Sbjct: 1 MREMQNLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKN 60
Query: 71 SWDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-------- 119
+S + F + L+ + +L G+++V + ML
Sbjct: 61 GDIAYSDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNF 120
Query: 120 ---------------NLNFWILNDIVWRKSNPM------------------------PNF 140
+ + + D++ S N
Sbjct: 121 RNEITRIKCNPKNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKNK 180
Query: 141 RGRRFQNAHE----TLIWASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPIC 189
R H S + K T + E + S+ P
Sbjct: 181 RRYTTVPIHAPGEVESGECSKAFKGVLPPKGRHWRTDVATLERWDKEGLIEYSNNNNPRK 240
Query: 190 SG------SERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+
Sbjct: 241 KIYALEQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTL 300
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
A L+R FIGI+ I ++ ++
Sbjct: 301 KSAFLLQRKFIGIDNSCLAIQACKNKLETITKD 333
>gi|167630946|ref|YP_001681445.1| DNA methylase, putative [Heliobacterium modesticaldum Ice1]
gi|167593686|gb|ABZ85434.1| DNA methylase, putative [Heliobacterium modesticaldum Ice1]
Length = 770
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 10/140 (7%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+ ++ + +LE L K VD I+ DPPYN Y D DS D +
Sbjct: 127 HTLIEADNYHALQLLEYLYPKKVDCIYIDPPYNTGARDWKYNND------YVDSSDNWR- 179
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + + L +R+L +G L V + + +L + V + NP
Sbjct: 180 HSKWLSMMQKRLRIAKRILADDGVLIVTIDDNEHAHLTMLLNEIFPDRKLFSVPIQHNPR 239
Query: 138 PNFRGRRFQNAHETLIWASP 157
+ + S
Sbjct: 240 GTQGEKFAVTHETAIFVVSK 259
>gi|227508918|ref|ZP_03938967.1| possible adenine specific DNA methylase [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227191595|gb|EEI71662.1| possible adenine specific DNA methylase [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 367
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 10/155 (6%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD------- 66
+ K II +++ L+ L VD I+ DPPYN +Y + +
Sbjct: 34 NKSKSMIIHADNLIALKSLLPQYEGKVDCIYIDPPYNTGNEKWVYNDNVNDPKFRKWLGQ 93
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
V + S + + L R+L NG +++ + + + +
Sbjct: 94 VVGKEGEDLSRHDKWLCMMYPRLKLLARLLSSNGVIFISIDDNEFSNLKAICDEIFGHDN 153
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ Q HE +I A
Sbjct: 154 ALGPIIQDKGNAKNDTHNVQKNHEYIIAYRKKIDA 188
>gi|121596365|ref|YP_988261.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax sp.
JS42]
gi|120608445|gb|ABM44185.1| DNA methylase N-4/N-6 domain protein [Acidovorax sp. JS42]
Length = 1103
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 19 WKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLY--------------- 58
W ++++ G+S+ V+ L A V +I+ DPPY ++
Sbjct: 289 WANRLVAGDSLLVMNSLLQKEGMAGQVQMIYIDPPYGIKYGSNFQPFVGKRDVKDRADAD 348
Query: 59 -RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ ++ A D+W+ +Y + R LL R +L +G+++V S N+ + +
Sbjct: 349 LTQEPEMIKAFRDTWELG--IHSYLTYLRDRLLLARELLSDSGSVFVQISDENLHHVREL 406
Query: 118 L 118
+
Sbjct: 407 M 407
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ + +K + Q + R ++ +T PGD++LDP GSGT+ VA+
Sbjct: 563 VFPVNNLWDDTVTSGFSDKKAYVVQTHPLAVERCMLMTTDPGDLVLDPTCGSGTTAYVAE 622
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQ------PLGNIELTVLTGKRTEPRVAFNLLVER 296
K R +I + + I +A +R+ + + L +T P V +
Sbjct: 623 KWGRRWITCDTSRVAITLAKQRLMTASFDYFALRYPHEGLRGGFIYKTVPHVTLKSIANN 682
Query: 297 GLIQP 301
I
Sbjct: 683 AEIDA 687
>gi|16272988|ref|NP_439215.1| type III restriction-modification system methyltransferase-like
protein [Haemophilus influenzae Rd KW20]
gi|12230654|sp|P71366|T3MH_HAEIN RecName: Full=Putative type III restriction-modification system
HindVIP enzyme mod; Short=M.HindVIP; AltName:
Full=HindVIP methyltransferase
gi|1574609|gb|AAC22721.1| predicted coding region HI1056 [Haemophilus influenzae Rd KW20]
Length = 629
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 21/165 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + + ++ IIKGN++ L L V LI+ DPPYN +G Y
Sbjct: 104 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYN- 162
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF + + F + L + +L +G ++V + ++ +
Sbjct: 163 ------------DKF-NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDIEQAYLKILMDD 209
Query: 121 LNFWILNDIVWRKSNPMPNFR----GRRFQNAHETLIWASPSPKA 161
+ + + G+ +++ E + S + +
Sbjct: 210 IFDRDNFLNIVTVKTKIGGVSGSSEGKSLKDSTEFINVFSKNRER 254
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KPEALL RI+ +TK GDI+LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 435 KKPEALLRRIIDMTTKEGDIVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLK 494
Query: 267 S 267
Sbjct: 495 K 495
>gi|119508956|ref|ZP_01628108.1| putative type II DNA modification enzyme (methyltransferase)
[Nodularia spumigena CCY9414]
gi|119466485|gb|EAW47370.1| putative type II DNA modification enzyme (methyltransferase)
[Nodularia spumigena CCY9414]
Length = 437
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 17/163 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +++I G ++ VL L V LI+ DPPY + + + DH+ D +
Sbjct: 50 KKPINQLIYGENLRVLSSLIKNDAVVGKVGLIYIDPPYATGSSFESRKRDHAYHDIMEG- 108
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIV 130
Y F R L+ R +L G+++V + + ++ + +
Sbjct: 109 -------AEYLEFLRQRLILLRELLSEEGSIYVHLDQNMACAVKIIMDEIFGTKNFRNWI 161
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
RK N+ ++ N + +++ + + Y +N
Sbjct: 162 TRKKCNPKNYTRNQYGNIADYILFYTKTEN---YVWNQQFDPW 201
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 12/256 (4%)
Query: 52 QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA-----WLLACRRVLKPNGTLWVIG 106
+ + +++ + Y F W +
Sbjct: 153 GTKNFRNWITRKKCNPKNYTRNQYGNIADYILFYTKTENYVWNQQFDPWTENTAKKEYQY 212
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA-SPSPKAKGYT 165
RI + + + M G+ +Q +TL + T
Sbjct: 213 VEERTGRIYKKVPIHAPGVRKGATGQPWRGMLPPPGKHWQYTPQTLDEMDTRGEIYWSST 272
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPG 224
N + + + I + N++ + +PT+K + RI+++S+ PG
Sbjct: 273 GNPRRKVYLDNS---QGISVQDIWLNFKDAHNQNIKITGYPTEKNLDFIKRIILASSNPG 329
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
D++LD F GSGT+ AVA++L R +I I+ I +R+ + +
Sbjct: 330 DLVLDAFAGSGTTVAVAEELGRKWIAIDNSSLAITTIVQRLVKGTEAMGDFVNRNNPTKY 389
Query: 285 EPR--VAFNLLVERGL 298
E + + N ++ GL
Sbjct: 390 EQQSLINTNRILHTGL 405
>gi|147676551|ref|YP_001210766.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
SI]
gi|146272648|dbj|BAF58397.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
SI]
Length = 558
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 13/148 (8%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ II G+++ L+ L V I+ DPPYN +Y + ++ + W
Sbjct: 41 NLIIHGDNLKALKALLPNYAGKVKCIYIDPPYNTGNEKWVY--NDNVNSPMMQEWLGKVV 98
Query: 73 DKFS--SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDI 129
D+ + + L R +L+ +G ++V + + + ++
Sbjct: 99 DREDLTRHDKWLCMMMPRLKLLRELLREDGVIFVSIDDNEVHHLRMLMDEVFGDQNFIAC 158
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + NP R HE ++ +
Sbjct: 159 IVVQLNPRGRTLDRFLAKTHEYILLYAK 186
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK- 243
I +G E + K L+ R + + DI+LD F GSGT+ +
Sbjct: 325 NINNENGKEVCNEIFLKCPFDFPKSPELVKRCIKLGSGNTDIVLDSFAGSGTTAHAVLEL 384
Query: 244 -----LRRSFIGIEMKQDYIDIATKRIAS 267
R FI +E + +I +R+
Sbjct: 385 NKEDGGNRKFILVECEDYADEITAERVRR 413
>gi|281421728|ref|ZP_06252727.1| methyltransferase [Prevotella copri DSM 18205]
gi|281404223|gb|EFB34903.1| methyltransferase [Prevotella copri DSM 18205]
Length = 663
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+G+++ L L A +D+I+ DPPYN Y DA D D + +
Sbjct: 90 HILIEGDNLEALTALSYTHAGKIDVIYIDPPYNTGNKDFKY------NDAYVDKEDAYYN 143
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + +F L + +LK +G +++ + ++ +L + F +
Sbjct: 144 SK-WLSFMNKRLKIAKSLLKEDGVIFISIGDDEVSQLK-ILCDEIFSRQCLGFLPRIAKS 201
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ +G F+ + ++ + + +
Sbjct: 202 GSKQGTYFRPTKDYILVYCKNTEMVKGFHTKE 233
Score = 42.7 bits (99), Expect = 0.099, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 152 LIWASPSPKAKGYTFNYDALKAANE-DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ Y Y+ + + D + D + + S + P KP
Sbjct: 333 IDSYGNHTDWNVYEKKYEDEETDGDIDYNLPDDVIYDYLNSSATTYLNNMGIDFPFSKPW 392
Query: 211 ALLSRILVSSTKPGDI-ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIA 261
L++ ++ + KP DI +LD F GS T+ K+ R I ++ I ++A
Sbjct: 393 ELIAYLIAITEKPSDITVLDFFAGSATTLDAIMKMNDGDGGHRKGILATNNENNICEEVA 452
Query: 262 TKRI 265
RI
Sbjct: 453 HPRI 456
>gi|115289030|gb|ABI85522.1| M.Hin1056ModP-2 [Haemophilus influenzae]
gi|115289087|gb|ABI85561.1| M-Hin86orf1056P-2 [Haemophilus influenzae]
Length = 717
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 19/127 (14%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L + LI+ DPPYN +G Y DKF
Sbjct: 218 ENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGNDGFKYN-------------DKF- 263
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + F + L + +L +G ++V + + ++ + + V
Sbjct: 264 NHSTWLTFMKNRLEIAKTLLADDGVIFVQCDDNEQAYLKILMDEVF--GRENFVTTIHCQ 321
Query: 137 MPNFRGR 143
M +G
Sbjct: 322 MSTTQGM 328
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 8/224 (3%)
Query: 47 PPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
P Y+L+ + + D + + L+ + K + I
Sbjct: 360 PLYDLRSEYDEHYSLYLKNDGAIGQLKELYDYRFPKDLKNTTALSLKEAFKKSNEFAEIV 419
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYT 165
H + + + + N R + + + + G T
Sbjct: 420 KTHLSKIVRSDKVTGFDLSVELENSKWKEVERNGRKYILTLDKNGKVCQLLRLQDSWGKT 479
Query: 166 FNYDALKAANE--DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
NY+ + + +L G E + K K E L+S+I+ ++T
Sbjct: 480 DNYNNDEGLRKIRGNWWEGFYLDMGNVGKEGSVDFKNGK-----KGERLISQIIKTATNE 534
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
DI+LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 535 NDIVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 578
>gi|163796619|ref|ZP_02190578.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
gi|159178179|gb|EDP62724.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
Length = 437
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/268 (16%), Positives = 84/268 (31%), Gaps = 31/268 (11%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKF 75
+++ G+S + +L + DPPY + +G + + +WD
Sbjct: 176 HRLLCGDSTKPEDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDS 234
Query: 76 -SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ YD F A + + + + + + + ++ I+W K
Sbjct: 235 SQGSDLYDGFIAAAVAEA---ISEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 291
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ +H + + D + S W +P + ER
Sbjct: 292 RGV-------LTRSH-----YLWKHEPCFMGWRRPNRPPKVADETLASTWELPSFAKDER 339
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HPT KP + G + +PF GSG+ + R +E+
Sbjct: 340 P-------DHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEIS 392
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGK 282
Y+D+A +R G + K
Sbjct: 393 PAYVDVAIER--WQTDTGRETILDGDEK 418
>gi|108758950|ref|YP_630621.1| modification methylase [Myxococcus xanthus DK 1622]
gi|108462830|gb|ABF88015.1| modification methylase [Myxococcus xanthus DK 1622]
Length = 260
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 17/228 (7%)
Query: 45 ADPPYNL---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
DPPY L + G R + + +F + Y AF+ AWL + L P+
Sbjct: 37 TDPPYCLLTRRRKGGDLRDTRAHKKIDQNPIVRFETVRDYRAFSEAWLSSATAHLTPDAP 96
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
++ + + P+ RG T A+
Sbjct: 97 --------------LIIWTNLLGKEPILTAARGLGYPHLRGEYVWGKRTTDKNANEQTLR 142
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
A A + + G + HP KP ++L ++ + +
Sbjct: 143 VYEVALVIARTPAPPLAPGDLPTVWAVVGGYDDEGEAKRWGGHPHHKPFSVLEPLVRTYS 202
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+PGD +LDPF GSG+ + A +L R +E++ ++ + T R+
Sbjct: 203 RPGDTVLDPFAGSGSMPSAALRLGRRPACLEIEPEWAERVTHRLRETA 250
>gi|187736011|ref|YP_001878123.1| DNA methylase N-4/N-6 domain protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426063|gb|ACD05342.1| DNA methylase N-4/N-6 domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 632
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 23/171 (13%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------- 58
E ++ I+G+++ VL+ L V +I+ DPPYN +
Sbjct: 88 REESVDFDNTQNLYIEGDNLDVLKVLRETYLGKVKMIYIDPPYNTGNDFVYNDEFAQGKS 147
Query: 59 -----------RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ ++ + ++ + L R +L +G +++
Sbjct: 148 EFEQNSGLFDEEGNQTIDPMLRNTESNGRFHTDWLNMIYPRLKVARDLLSEDGVIFISID 207
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-FQNAHETLIWASP 157
+ I + + + + N G HE ++ S
Sbjct: 208 NNEIENLRKICDEIFSESNCICQFVWKNKYGAGGGTNSVAYVHEYILAYSK 258
>gi|117926185|ref|YP_866802.1| nuclease [Magnetococcus sp. MC-1]
gi|117609941|gb|ABK45396.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
Length = 444
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 45/265 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDL------IF--ADPPYNLQLNGQLY--RPDHSLVDAVT 69
+ +++ G+S++ P + L I DPPY + +G + + +++
Sbjct: 175 EHRLLCGSSLN-----PDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKETRKRESLN 229
Query: 70 DSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
W D E Y+ F RA + PN + + + + +
Sbjct: 230 KDWSDSYGVTWDDSSQGPELYEGFIRAAIDHAIE---PNAAWYCWHASKRQAMLEAVWEK 286
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + I+W K + + + A+ +
Sbjct: 287 MGAFQHQQIIWNKEKGVLTRSKYLW-----------KHEPCLMGWIKGNMPPKADGAEFL 335
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ W I SG ER HPT KP + + + G + +PF GSG+
Sbjct: 336 STVWDIQGLSGDERP-------DHPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMA 388
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
+ R +E+ Y+D+A KR
Sbjct: 389 GEMTGRRVHAMEISPVYVDVAVKRF 413
>gi|323963718|gb|EGB59223.1| DNA methylase [Escherichia coli M863]
gi|327252667|gb|EGE64321.1| DNA methylase family protein [Escherichia coli STEC_7v]
Length = 361
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ L SVDLI DPPY + + W + Y
Sbjct: 12 LINTDCLEFIQTLSENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG + A L
Sbjct: 267 YTDVWTHKPVQYYPGK--HPCEKPADMLRQIISASSRPGDVVADFFMGSGATIKAAMGLG 324
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R IG+E++ + I
Sbjct: 325 RRTIGVELESGRFEQTVGEI 344
>gi|284109435|ref|ZP_06386482.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
WGA-A3]
gi|283829822|gb|EFC34119.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
WGA-A3]
Length = 139
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 13/144 (9%)
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
+ I W K PMP R NA E + S + AN
Sbjct: 1 RSKITWVKKAPMPESVKNRPSNATEEVFLFSKTANYYYDNQAVREETGANLKNYWL---- 56
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L HP P+ L R ++ T+P D++LDPF GSGT+G VA +L
Sbjct: 57 ---------LGPDSSGTPHPAVFPKELARRCILLGTRPRDLVLDPFSGSGTTGLVAAELN 107
Query: 246 RSFIGIEMKQDYIDIATKRIASVQ 269
R + IE+ ++Y+ + R+ +V
Sbjct: 108 RRAVLIELNEEYVAHSKTRLDTVA 131
>gi|126724447|ref|ZP_01740290.1| Site-specific DNA-methyltransferase (adenine-specific)
[Rhodobacterales bacterium HTCC2150]
gi|126705611|gb|EBA04701.1| Site-specific DNA-methyltransferase (adenine-specific)
[Rhodobacterales bacterium HTCC2150]
Length = 662
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 22/163 (13%)
Query: 18 EWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--- 68
+WK + I+G+++ L+ L V +I+ DPPYN +D
Sbjct: 86 DWKKTQNLFIEGDNLEALKLLQKSYAGKVKMIYIDPPYNTGKEFIYPDKYQDNLDTYLQY 145
Query: 69 ------------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+++ + L A + +L +G + + +
Sbjct: 146 TGQKNEEGLSVTSNTESSGRFHTNWLNMMYPRLFAAKTLLSQDGVIMISIDEKECCNLRQ 205
Query: 117 ML-QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ Q +N AHE ++ +
Sbjct: 206 ICEQIFGSENFVAQFSVVTNYKGRNDKTNVAMAHEYVLVFRKN 248
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
K LL R + TK DI+LD FFGSGT G + R FIGI++
Sbjct: 424 PKSVELLKRCIYYGTKKDDIVLDFFFGSGTLGQALFEVERENPRGRKFIGIQL 476
>gi|303251379|ref|ZP_07337557.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302649921|gb|EFL80099.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 407
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 22/166 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDSWD- 73
+ I+G ++ VL+ L S+ +I+ DPPYN + + + + A T
Sbjct: 67 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTGEIGE 126
Query: 74 --------------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ L R +LK +G +++ + ++ +
Sbjct: 127 DGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLKLLCD 186
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ +G HE ++ + +
Sbjct: 187 EVFGEENFVAELIWDKQHSQQQGLFKTY-HEYVLLYAKNINNHKNI 231
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
L+ + KP +LS + T DIILD F GSG
Sbjct: 367 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSG 407
>gi|191173171|ref|ZP_03034703.1| DNA methylase [Escherichia coli F11]
gi|300992750|ref|ZP_07180027.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
gi|190906556|gb|EDV66163.1| DNA methylase [Escherichia coli F11]
gi|300305246|gb|EFJ59766.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
gi|324010839|gb|EGB80058.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
Length = 350
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDENYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIA 261
R +G+E++ + +
Sbjct: 325 RRALGVELESERFNQT 340
>gi|330723411|gb|AEC45781.1| adenine DNA methyltransferase subunit [Mycoplasma hyorhinis MCLD]
Length = 604
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 10/167 (5%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-------PAKSVDLIFADPPYNLQL 53
+ + L+ + ++ ++ +I G + VL+ L + DLI+ DPPYN Q
Sbjct: 80 LEKDEKLSFSSSKMK-DNLQNSLIIGENYDVLKNLIGVEREREDANFDLIYIDPPYNTQK 138
Query: 54 NGQLYRP-DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ A + S + L +++LK +G ++V +
Sbjct: 139 TSDDGNNLTDDEITADKFIYRDKFSRTGWLNLLNERLKLAKQLLKEDGVIFVSIDDNEQA 198
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ ++ + S + F HE ++ S +
Sbjct: 199 YLKVLMDEIFGEENFVVNLIWISAWGSKQDAKYFSQNHEYILVYSKN 245
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
+ + KP L+ I+ +LD F GSGT+G +L RSF+ +
Sbjct: 443 NFDSFFDFPKPVNLIKYIIDLFPSKNTRVLDFFAGSGTTGQAVLELNKEDGGSRSFVLVT 502
Query: 253 MKQDYI--DIATKRIASVQP 270
++ I +I +R+ +
Sbjct: 503 NNENSIGQNITYERLYRINK 522
>gi|158424882|ref|YP_001526174.1| DNA methylase [Azorhizobium caulinodans ORS 571]
gi|158331771|dbj|BAF89256.1| DNA methylase [Azorhizobium caulinodans ORS 571]
Length = 576
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ ++ G+++ L+ L A VD ++ DPPYN + Y + + V W
Sbjct: 40 NLVVHGDNLHALKALLPLYAGKVDCVYIDPPYNTGKSDWSY--NDKVNSPVIQEWLDSNP 97
Query: 73 ---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
D + + L R ++KP ++ + + +L
Sbjct: 98 ITVDDTLRHDKWACMMWPRLQLLRDLMKPGAVIFASIDDNEVALFKHLLH 147
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 74/234 (31%), Gaps = 15/234 (6%)
Query: 87 AWLLACRRVLKPNGTLWVI---GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
W + L P I G + + + W L + +K P P R
Sbjct: 233 EWFRLHKPQLGPLQEYNQIDRGGIFTASRSVHNPGREGYRWDLMNPKTQKLVPQPLMGYR 292
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-QMRSDWLIPICSGSERLRNK--DG 200
++ + L+ + + +M I G+ L+ +
Sbjct: 293 FPEDTRDELLAQDRIIFSDDPDQLIRLKTYVKDYKEKMPGIIEIDGRRGANELKKIFPES 352
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMK 254
++ K L+ +L + P ++LD F GSGT+ K R FI +EM+
Sbjct: 353 KQAFKNPKTYTLIEWLLSYTAGPDAVVLDSFAGSGTTAQAVMKLNERDGGNRKFILVEME 412
Query: 255 QDYIDIATKRIASV---QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
++ +R+ + P + T VE + G+ L
Sbjct: 413 DYADELTAERVRRLIQGVPTSKDDEYKTGLGGTFTYCTLGDPVELDKVLSGETL 466
>gi|17225506|gb|AAL37440.1|AF328911_2 type II DNA modification enzyme [Helicobacter pylori]
Length = 343
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 103/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENSIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V Y + ML
Sbjct: 63 SDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFRNEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPIC----- 189
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 190 -SGSERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 243 EQAGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSDLAIQACKNKLETITKD 330
>gi|167589701|ref|ZP_02382089.1| DNA methylase N-4/N-6 domain protein [Burkholderia ubonensis Bu]
Length = 294
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 87/273 (31%), Gaps = 38/273 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + + L +SV + DPPY L + L W SF+ +
Sbjct: 7 RLFQEDCFEWLASQKPQSVHAVVTDPPY--GLVEYTAKETGKLRAGKGGIWRIPPSFDGH 64
Query: 82 DAFTRAWL-------------------LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+VL P + + + + +
Sbjct: 65 QRAPLPRFTVLTETDRQALHAFFKRFGTLIAKVLVPGANIVIASNPLLSHIVAEAMGQAG 124
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF-----------NYDAL 171
+ + M G R +NAH S P+++ + +
Sbjct: 125 LELRG---YIARQVMTMRGGDRPKNAHVEFDSVSVMPRSQWEPWVVLRAPLDGRVQDNLR 181
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPG-DIIL 228
+ + S +K+ HP+ KP+A + +I+ + G ++L
Sbjct: 182 RWGTGGFRRPSSERPFGDLIKSHPTPASEKKIAPHPSLKPQAFMRQIVRAVLPLGQGVVL 241
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
DPF G+G++ A A + G+E+ ++ +A
Sbjct: 242 DPFMGAGSTLAAANAIGYESCGVEVDSEFFALA 274
>gi|134288432|ref|YP_001110595.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134133082|gb|ABO59792.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
G4]
Length = 409
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 54/274 (19%), Positives = 93/274 (33%), Gaps = 44/274 (16%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLN---GQLYRP-------------------D 61
+ GNS + L S+ I PPY L G + D
Sbjct: 112 LFGNSEEAVGYLDDGSIQSIICSPPYPLLREKQYGNKHVNEYLDWLLRIAEQWPKKLTAD 171
Query: 62 HSLVDAVTDSWDKFSSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
S+V + D W + + Y L L ++HN ++ +
Sbjct: 172 GSVVINLGDVWTAGEPYMSLYQERLLIRLEDEL-----GWKLCQRYAWHNPAKMPAPAEW 226
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK-------------GYTFN 167
+ + + G + + L+ S + +++ G+
Sbjct: 227 VTIRRVRVKPSLEQIYWLAPNGEPYADNRNVLVPYSEAMRSRIAAGGETGGTRPSGHQLA 286
Query: 168 YDALKAANEDVQMRSDWLIPICSGSE---RLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
A N S + S + R + G +HP + P L L +T+ G
Sbjct: 287 AGAFDVDNGGAIPSSLLVAANTSSNSDYIRKCREQGLPVHPARFPADLPRHFLALTTREG 346
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
D LDPF GS +GAVA+++ R +IGI+ +Y+
Sbjct: 347 DTCLDPFGGSLETGAVAEEMGRHWIGIDCNLEYL 380
>gi|218295753|ref|ZP_03496549.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermus
aquaticus Y51MC23]
gi|218243912|gb|EED10439.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermus
aquaticus Y51MC23]
Length = 530
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 15/154 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +++G+++ L+ L V L++ DPPYN G +Y D+ + D K
Sbjct: 37 NLLVEGDNLEALKALLPQYRGRVKLVYIDPPYNTGNEGWVY-NDNVNSPEIRDWLGKVVG 95
Query: 78 FE-AYDAFTRAWLLACRR-------VLKPNGTLWVIGSYHNIFRIGTMLQ--NLNFWILN 127
E + WL +L+ +G+LW+ + + R +L + +
Sbjct: 96 PEAEDLSRHDKWLSMMYPRLRLLHELLREDGSLWMSIDDNEVHRARMLLDEIFGSQNFVA 155
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
++W+K N F + H+ ++ + K+
Sbjct: 156 TLIWQKKYSTQND-AIYFSDMHDYILVYAKRKKS 188
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 46/129 (35%), Gaps = 29/129 (22%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKP--GDIILDPFFGSGTSGAVAKKL------R 245
+R + PT KP LL RIL +T P GDI+LD F GSGT+G K
Sbjct: 319 EVRQILEGEDFPTPKPTRLLQRILQIATNPHDGDIVLDSFAGSGTTGHAVLKQNAADGGN 378
Query: 246 RSFIGIEMKQD-YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
R FI +E+ I +R+ ++ G+
Sbjct: 379 RRFILVELDPHIARSITRRRLEYAAREHGSGFQ--------------------YLRLGET 418
Query: 305 LTNAQGNIS 313
L G I
Sbjct: 419 LFTPDGRIR 427
>gi|325914237|ref|ZP_08176587.1| adenine specific DNA methylase Mod [Xanthomonas vesicatoria ATCC
35937]
gi|325539492|gb|EGD11138.1| adenine specific DNA methylase Mod [Xanthomonas vesicatoria ATCC
35937]
Length = 978
Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 24/173 (13%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W+++ I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 161 WQNRFILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNADH 220
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R L+ R +L +G+++V N+ R+ +
Sbjct: 221 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRLMVARDLLTESGSIFVQIGGENLHRVRAV 278
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + F N ++ L+W + + Y +
Sbjct: 279 MDEV-FGEQNFCAEIIFRKTARTSSNLLPTENDFLVWFARDKEKIKYRPIFQK 330
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K++ Q ++ R ++ +T PGD++LDP GSGT+ V+++ R +I + + + +A
Sbjct: 460 KIYVVQTDSLVVQRCILMTTDPGDLVLDPTCGSGTTATVSEQWGRRWITTDTSRVALALA 519
Query: 262 TKRIASVQ 269
RI +
Sbjct: 520 RARIMGAR 527
>gi|290558936|gb|EFD92322.1| DNA methylase N-4/N-6 domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 403
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
F +DI+ + T K Y Y ++ +
Sbjct: 12 QDGFARKHDIILYYKKGKEITFNSKDIKVERTNTSFFVDEAGKKYWLKYGKRFYFTDEGK 71
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
DW I S + + G +PTQKPEALL RI+ +S+ GD++ D F G GT+ A
Sbjct: 72 NPEDWWDDISPLSGPYKERIG---YPTQKPEALLERIIKASSNTGDVVADFFCGGGTTPA 128
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRI 265
VA++L R +I ++ + +++ RI
Sbjct: 129 VAQRLGRRWIASDISRIAVEVTKGRI 154
>gi|257124954|ref|YP_003163068.1| Site-specific DNA-methyltransferase (adenine- specific)
[Leptotrichia buccalis C-1013-b]
gi|257048893|gb|ACV38077.1| Site-specific DNA-methyltransferase (adenine- specific)
[Leptotrichia buccalis C-1013-b]
Length = 653
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/244 (12%), Positives = 83/244 (34%), Gaps = 28/244 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLN------GQLYRPD 61
++ + ++ I+G+++ VL+ L S+ +I+ DPPYN + ++ + +
Sbjct: 82 KDSKNADTTENIYIEGDNLEVLKLLRQNYYNSIKMIYIDPPYNTGNDFVYNDTFKMDKEE 141
Query: 62 HSLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + ++ + L R +L +G +++ +
Sbjct: 142 SDKAEGIISENNEKLQKNQKSTNRYHANWLNMMYPRLKLARDLLTDDGVIFISIDDNEQA 201
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + +I + P ++ + + E ++ + ++
Sbjct: 202 NLKRLCDEIFGEENFVEIFSWQKTSTPPNLSKKTKKSVEYILCYQKNECKTLKGLVKESK 261
Query: 172 KAANEDVQMRSDWLIPICSGSE----RLRNKDGEKLHPTQKP---EALLSRILVSSTKPG 224
+ +S+ + + E ++N+ EK + E L + +
Sbjct: 262 ST--NGLMNQSNSIGTLVFPHESVETSIKNEKLEKGIYGTESYVIELLSDVEIRNGKFLN 319
Query: 225 DIIL 228
DIIL
Sbjct: 320 DIIL 323
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP +L++ +L +IILD F GS T+ + R +I +++
Sbjct: 399 PKPTSLITYLLNMLELENNIILDFFSGSATTAHAIMQLNSEDDGNRKYIMVQL 451
>gi|217031873|ref|ZP_03437376.1| hypothetical protein HPB128_199g81 [Helicobacter pylori B128]
gi|216946525|gb|EEC25127.1| hypothetical protein HPB128_199g81 [Helicobacter pylori B128]
Length = 374
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNENFIYGDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEVLKQLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ ++ + + + FQN +E ++ + +A
Sbjct: 194 DNEAAQLKLLCDEIFGERNFLSSLTWLKGNAQNDAQYFQNNYENILVYAKHVEA 247
>gi|237731137|ref|ZP_04561618.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226906676|gb|EEH92594.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 350
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I +S+ + LP S+DLI DPPY + + W + Y
Sbjct: 12 LINADSLQYVATLPDNSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ + L RVLKP G++++ H + ++ F +LN I+W K + N
Sbjct: 58 RWLDSCLAEYARVLKPAGSIYLFCG-HRLASDIEIMMRARFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGDI+ D F GSG++ A +L
Sbjct: 267 YTDVWTHKPVQFYPGK--HPCEKPADMLKQIISASSRPGDIVADFFMGSGSTVKAAIELG 324
Query: 246 RSFIGIEMKQDYI 258
R IG+E++ D
Sbjct: 325 RRAIGVELEADRF 337
>gi|295111483|emb|CBL28233.1| Adenine specific DNA methylase Mod [Synergistetes bacterium SGP1]
Length = 642
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 24/171 (14%)
Query: 18 EW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY----------RPD 61
+W ++ I+G+++ VL+ L V +I+ DPPYN + +Y +
Sbjct: 93 DWDATENLYIEGDNLDVLKLLQESYFGKVKVIYIDPPYNTGSDRFVYSDTFAVSEEEYLE 152
Query: 62 HSLVDAVTDS----WDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
S + + F++ + + LL R +L +G +++ + + +
Sbjct: 153 RSGAKGEDGTVLFRENNFANPRFHSDWLSMMYPRLLLARNLLSDDGVIFISIDENEVSNL 212
Query: 115 GTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ P + + E ++ A Y
Sbjct: 213 QKLCNEAFGERNYAATFLWTRTNTPPALSCKCRKTVEYVLAYEKRRSALKY 263
Score = 36.9 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 202 KLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
K KP +L+ + ++LD F GSGT+ ++ R FI +++
Sbjct: 404 KCFDYAKPLSLVQAVARMVCAQDKEALVLDFFSGSGTTADAIMRMNAEDGGRRRFIMVQI 463
>gi|166363574|ref|YP_001655847.1| DNA methyltransferase [Microcystis aeruginosa NIES-843]
gi|166085947|dbj|BAG00655.1| DNA methyltransferase [Microcystis aeruginosa NIES-843]
Length = 565
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 50/218 (22%)
Query: 21 DKIIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-----AVTDSW-- 72
+K+ G+++ VL K + +S+DL + DPP+N + N + D A D+W
Sbjct: 11 NKLYYGDNLEVLRKYIKDESIDLCYIDPPFNSKRNYNQIYNNLGKEDQAQAQAFVDTWTW 70
Query: 73 ----------------DKFS-----------------SFEAYDAFTRAWLLACRRVLKPN 99
KF+ S AY ++ RVLK
Sbjct: 71 DNHANEALEEIQSNYQGKFTSQTIDLIDGLTKVLGKGSLLAYLVSMTLRIVEIHRVLKST 130
Query: 100 GTLWVIGSYHNIFRIGTML---QNLNFWILNDIVWRKSNPMPNFRG---RRFQNAHETLI 153
G+ ++ + +L + + K N +++ N + ++
Sbjct: 131 GSFYLHCDPTASHYLKIVLDTVFCPQGGDFKNEISWKRTTAHNDAKQGQKQYGNIRDVIL 190
Query: 154 WASP---SPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ + Y+ + N +
Sbjct: 191 FYTKSNRWNWNCQYSSYSEEYIEKNYRLVEEKTGRRYC 228
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
V + ++GR + + E + + + N + +M L
Sbjct: 241 VSYEFYGTYPYKGRYWAYSKENMEKF-MAEGRLYFPKNGGPPRYIRYLDEMPGVTLQNNW 299
Query: 190 SGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
L + E+L +PTQKPEALL RI+ +S+ GD+ILD + G GT+ AVA++L R++
Sbjct: 300 DDIFPLTSSAKERLGYPTQKPEALLERIIKASSNKGDVILDAYCGCGTTIAVAERLERNW 359
Query: 249 IGIEMKQDYIDIATKRIAS 267
IGI++ I + KR+
Sbjct: 360 IGIDITYQSISLMLKRLED 378
>gi|194337258|ref|YP_002019052.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309735|gb|ACF44435.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 571
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/215 (13%), Positives = 67/215 (31%), Gaps = 26/215 (12%)
Query: 18 EWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNG-------QLYRPDHSLVDA 67
+ K+ +++G+++ L+ L A V I+ DPPYN ++ + D ++ +
Sbjct: 36 DSKNLLVQGDNLVALKALLPYYAGQVKCIYIDPPYNTGVDERDESGKRTGWVYDDNVSNP 95
Query: 68 VTDSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
W + S + + L+ LK +G ++ + +
Sbjct: 96 EIKDWLHKVVGAEAEDLSRHDKWLCMMYPRLMMLHEFLKEDGVIFASIDETEYANLRLLF 155
Query: 119 Q-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + N HE ++ + + + L +
Sbjct: 156 DEIFGLGNRVGTIIWDNATDNNP--TNIAMEHEYILCYAKNKSQLPSVWKSPNLAVKTKL 213
Query: 178 VQMRSDWLIPICSGSER----LRNKDGEKLHPTQK 208
+Q+ D++ ER + K +
Sbjct: 214 LQIGDDFVEQYPDQKERQEAYTKWFRENKDYLWPF 248
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 13/212 (6%)
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKP-NGTLWVIGS--YHNIFRIGTMLQNLNFWI 125
D +++ + W + L P + ++ G Y + + +
Sbjct: 218 DDFVEQYPDQKERQEAYTKWFRENKDYLWPFDRYKFIDGDGIYTGSQSVHNPGKEGYRYD 277
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV-QMRSDW 184
+ P R Q + L+ T + + ++ S +
Sbjct: 278 IIHPTTELPCKQPMMGYRFPQETYYRLLSEKRVIFGNDETKLIELKVYVKDYRAKLSSLF 337
Query: 185 LIPICSGSERLRNKDG--EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ +++ ++ KP LL + +T D+ILD F GSGTSG
Sbjct: 338 TLDGRVGTNEIKDILHYDKRPFDFPKPTTLLEELFSFTTSGDDLILDSFAGSGTSGHAVL 397
Query: 243 K------LRRSFIGIEM-KQDYIDIATKRIAS 267
K R FI IEM ++ DI +RI
Sbjct: 398 KLNKSDGQNRRFILIEMKEKIARDITAERIRR 429
>gi|308064279|gb|ADO06166.1| type III R-M system modification enzyme [Helicobacter pylori
Sat464]
Length = 656
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/202 (13%), Positives = 65/202 (32%), Gaps = 25/202 (12%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ ++ + + + +W N T
Sbjct: 194 DNQAAQLKLLCDEIFGEGNFVAQFIWHSKNKPSGNTTEDKTIDTRTEYIFCYQRYNFKAN 253
Query: 166 FNYDALKAANEDVQMRSDWLIP 187
+ + + E + D
Sbjct: 254 KHENTKEELEEKGYILKDEYFE 275
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 15/206 (7%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
YN + N + + F + Y L + ++
Sbjct: 248 YNFKANKHENTKEELEEKGYILKDEYFETRGHYK------LTPLMHSCSASSFQYIESLD 301
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMP-------NFRGRRFQNAHETLIWASPSPKA 161
+ I + I + +R + N + + +
Sbjct: 302 YEIQAPDGTWFKNHQNIKKEKSYRYTWSKKLFDFGNQNGFIEFQKTSDGFWCAYRKMYEL 361
Query: 162 KGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVS 219
+ + + G+ +RN +GEK+ KP L+SR++
Sbjct: 362 CAIDNKKLQIIYRKSGNAYSNLITNLYSDIGANEVRNIFNGEKIFSYPKPTKLISRLIEL 421
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLR 245
ST GDIILD F GSGT+ +
Sbjct: 422 STNEGDIILDFFAGSGTTAHAVLESN 447
>gi|15837243|ref|NP_297931.1| DNA methyltransferase [Xylella fastidiosa 9a5c]
gi|9105517|gb|AAF83451.1|AE003909_4 DNA methyltransferase [Xylella fastidiosa 9a5c]
Length = 380
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 21/152 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G++++VL+ LP + +D PPY + + + + +
Sbjct: 50 LLLNGDALAVLKSLPDECIDFAMTSPPYWGKREYE------------NGGIGLEADYRDF 97
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQN-LNFWILNDIVWR 132
A L +RVLKP G+ W+ IG +N +R+ L + + + N +VW
Sbjct: 98 VKDLAAIFLELKRVLKPTGSFWLNIGDTYNGKGLVGIPWRVAFELTDVQGWTMRNSVVWN 157
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
K + R N HE L PK Y
Sbjct: 158 KLKGGMDNSKDRLANVHENLFHFVKQPKGYYY 189
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H P L R L+++ PG I+LDPF G+GT+ A L +GI++ + Y++++
Sbjct: 314 AHFAPYPLDLCRRPLLATCPPGGIVLDPFCGTGTTLLAAGNLGLKSVGIDISRHYLELSQ 373
Query: 263 KRIA 266
++
Sbjct: 374 EKCD 377
>gi|1072644|pir||S53866 cytosine methylase - phage HP1
gi|695570|emb|CAA56446.1| cytosine methylase [Halobacterium phage phiH]
Length = 472
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 21/204 (10%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
++ + ++ +I EW + I +G++ VL +LP SV ++ PPY +
Sbjct: 16 AVVVMASETTISEWVNDIHEGDAEEVLAELPESSVHMVMTSPPYFGLRDY---------- 65
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
V S + Y RRVL+P+G+ W+ G +
Sbjct: 66 -GVDGQIGLEDSLDEYIDDLLDVAEQLRRVLRPDGSWWLNLGDSFAGSWGA----QSKDE 120
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
++ + + P N L S + S
Sbjct: 121 TSNNILQHGFPEKNPARNGG------LRRKSKMLVPHRVAIALQDAGWIVRSDAVWSKPN 174
Query: 186 IPICSGSERLRNKDGEKLHPTQKP 209
+RL H +P
Sbjct: 175 PMPHPVKDRLHEHKEFVFHLVPEP 198
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
I+LDPF G+GT+ AK+L R F+G+++ +Y+ +A KR+ L
Sbjct: 402 EPGIVLDPFAGAGTTCLSAKELGRRFLGVDLNPEYVAMAQKRVGVDVDEPERLLDEDETN 461
Query: 283 RTE 285
TE
Sbjct: 462 LTE 464
>gi|28199526|ref|NP_779840.1| DNA modification methylase [Xylella fastidiosa Temecula1]
gi|28057641|gb|AAO29489.1| DNA modification methylase [Xylella fastidiosa Temecula1]
gi|307578535|gb|ADN62504.1| DNA modification methylase [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 174
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 24/193 (12%)
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI-LNDIVWRKSNP 136
+ Y + R L R+L+ +G ++ + + ++ + I+ + N
Sbjct: 3 HDEYVRWQRDCLTEMMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNG 62
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
NF F +E + + N G
Sbjct: 63 GINFNSGYFLPTYEVIYLIAKPDFKLKPKAN---------------------AIGDVWTI 101
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++ + HP P L R + S +LDPF GSGT A+ L ++GIE
Sbjct: 102 PQESKNPHPAPFPVELAQRCIESVGAE--PVLDPFMGSGTIAVAAEILGYDWVGIEKSPK 159
Query: 257 YIDIATKRIASVQ 269
Y++++ R+ S++
Sbjct: 160 YVEMSLDRLKSLK 172
>gi|167957119|ref|ZP_02544193.1| adenine specific DNA methylase Mod [candidate division TM7
single-cell isolate TM7c]
Length = 429
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/220 (13%), Positives = 70/220 (31%), Gaps = 27/220 (12%)
Query: 1 MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ +K ++ ++ + +W + I+G++++ L+ L V +I+ DPPYN +
Sbjct: 62 IQEKTVQTLHPDRANSVDWDTTGNMFIEGDNLAALKILHKAYYGKVKMIYIDPPYNTGND 121
Query: 55 G------QLYRPDHSLVDAVTDSWDK------------FSSFEAYDAFTRAWLLACRRVL 96
+ R + +TD + L R +L
Sbjct: 122 FIYNDDSKQTRRSYETEAGITDDEGNVVRDDGLRTNTGGHKHSNWLNMMYPRLFLARNLL 181
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL--I 153
+ +G ++V + + + M+ V + + F H+ + I
Sbjct: 182 RQDGVIFVSIDDNEVHNLRLMMNEIFGEENFVAQVIWEKVHTRKNSAQYFSYNHDYVVTI 241
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + +N D + W + +
Sbjct: 242 ARKKDEWKRKLIPRENNSAYSNPDNDPKGVWKLDPIYANN 281
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 201 EKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKK------LRRSFIGI 251
E L KP L+ R++ ST GD+ILD F GSGT+ + R +I +
Sbjct: 371 ESLFDYPKPTQLIKRLMQISTDTNNGDVILDFFAGSGTTAHAVDELNAEDGGNRRWICV 429
>gi|27311183|ref|NP_758910.1| ORF17 [Vibrio phage VHML]
gi|26891703|gb|AAN12315.1| ORF17 [Vibrio phage VHML]
Length = 359
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%)
Query: 13 QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
Q + K+ + + +L+ LP SVDLI DPPY DA +
Sbjct: 3 QKKLEPRKNITVFNADCSQLLKTLPDNSVDLIATDPPYF-----------RVKQDAXDNQ 51
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
WD + A+ L R+LKP+G+L++ S R ++ + + +
Sbjct: 52 WD---DETEFLAWLDDILFDLWRILKPSGSLYLFCSDRLAARTEVLIAERFNVLNHIVWR 108
Query: 132 RKSNPMPNFRG 142
+++ R
Sbjct: 109 KENGVHKRHRK 119
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D + ++ G+ HP +KP L+ I+ +S + G ++LDPF GSG +
Sbjct: 267 DVPYTDVWDFDPVQYYPGK--HPCEKPLPLMRHIVSTSAREGMVVLDPFMGSGATAKACI 324
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
+L F+G+EM D K +A +
Sbjct: 325 ELGCHFVGVEMDDDIFSATAKSLAEYKTEEEQ 356
>gi|283778062|ref|YP_003368817.1| Site-specific DNA-methyltransferase (adenine- specific) [Pirellula
staleyi DSM 6068]
gi|283436515|gb|ADB14957.1| Site-specific DNA-methyltransferase (adenine- specific) [Pirellula
staleyi DSM 6068]
Length = 590
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVD-------AVTD 70
+ +++G+++ L+ L A V I+ DPPYN G +Y + + + V
Sbjct: 39 NLLVQGDNLLALKALLPYYAGRVKCIYIDPPYNTGNEGWVYNDNVNSPEIRQWIEATVGK 98
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ S + + L R L +G +++ R+ +
Sbjct: 99 EGEDLSRHDKWLCMMYPRLALLRDFLTEDGVIFISIDDFEAHRLRLI 145
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 22/130 (16%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-------RSF 248
R +G K+ P K +L+R++ T P DIILD F GSGT+ ++ R F
Sbjct: 371 RIFEGRKVFPNPKDHEVLARLIRYVTGPNDIILDSFGGSGTTAHAVLQINRDTEGSERRF 430
Query: 249 IGIEMKQD-YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
I +EM + ++I +RI V + G R + G L +
Sbjct: 431 ILVEMLPEVAVEITAERIRRVVAGVPGVPGLGGGFR--------------FCKLGAGLFD 476
Query: 308 AQGNISATVC 317
GNI+ V
Sbjct: 477 DSGNIAGEVK 486
>gi|254779922|ref|YP_003058028.1| putative type III restriction enzyme M protein [Helicobacter pylori
B38]
gi|254001834|emb|CAX30077.1| Putative type III restriction enzyme M protein [Helicobacter pylori
B38]
Length = 626
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 18/166 (10%)
Query: 13 QNSIFEW-KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+N++ + + +IKGN++ L L K V I+ DPPYN + Y +
Sbjct: 157 KNALKDKNTNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN------- 209
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ ++ F + L A R L +G ++V + + ++ +
Sbjct: 210 -------FNHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFV 262
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ HE ++ + + +
Sbjct: 263 SCITHIVKPEGRMYGQVAKTHEYILVYAKNINNLIFNEIEKEGHTF 308
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 54/106 (50%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ D + G+E ++ ++ KPEALL RIL STK D++LD F GSGT+
Sbjct: 416 KSIFWDKSMITQKGTEEVKQIFKTQIFDFPKPEALLQRILEISTKENDLVLDFFAGSGTT 475
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
AVA K++R +IGIE I +R+ V ++ G +
Sbjct: 476 CAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCGFK 521
>gi|317178367|dbj|BAJ56155.1| fusion protein of dpnA and hopN [Helicobacter pylori F30]
Length = 95
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPTQK AL+ +I+ T P DI+LDPF GSGT+G K+L+R+FIGIE +++Y I+ K
Sbjct: 31 HPTQKSLALMEKIISIHTNPNDIVLDPFMGSGTTGLACKRLKRNFIGIESEKEYFQISKK 90
Query: 264 RIASV 268
R+
Sbjct: 91 RLNLF 95
>gi|288818917|ref|YP_003433265.1| adenine-specific DNA methylase [Hydrogenobacter thermophilus TK-6]
gi|288788317|dbj|BAI70064.1| adenine-specific DNA methylase [Hydrogenobacter thermophilus TK-6]
gi|308752504|gb|ADO45987.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
TK-6]
Length = 824
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/318 (16%), Positives = 96/318 (30%), Gaps = 54/318 (16%)
Query: 22 KIIKGNSISVLEKLP---AKSVDLIFADPPYN-------------------------LQL 53
+IK + L + + V I+ DPP+N ++L
Sbjct: 387 LLIKSENWQALNSILPRFKEKVQTIYIDPPFNKEQDADYFYEVDYKDATWATMLENRVRL 446
Query: 54 NGQLYRPDHSLVD--AVTDSWDKFSSFEAYD---AFTRAWLLA----------------- 91
+L R S+ +W + F ++
Sbjct: 447 GRELLRDTGSIFVRCDYNGNWIVRPLMDEIFGKENFRNEIIVNRTKKIFTGVKGYNVATD 506
Query: 92 -CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
K G + + + +GR + E
Sbjct: 507 DLFFYSKSQGFCFNPQYKRREKAQKWLNMHSPGERRPPERIIFGRLFYPPKGRHWTFTQE 566
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG---EKLHPTQ 207
T+ + + N+ M + G + PT+
Sbjct: 567 TINKMIKEGRIRINEEVEYIDIKGNKVKGMPQYLTGEDELLDSNWTDIPGYSQNQGFPTE 626
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
E LL R++ S++ GD+++D F GSGT+ AVA KL+R +IG+EM + + + R+
Sbjct: 627 NSEILLKRVIESTSNEGDLVMDFFLGSGTTTAVAHKLKRKWIGVEMGEHFYTVVLPRMKK 686
Query: 268 VQPLGNIELTVLTGKRTE 285
V ++ + +
Sbjct: 687 VLFYDKSGISKEKDVKEK 704
>gi|17225524|gb|AAL37453.1|AF328916_3 type II DNA modification enzyme [Helicobacter pylori]
Length = 343
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 103/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V + ML
Sbjct: 63 SDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFRNEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPIC----- 189
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 190 -SGSERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ G I+LD F GSGT+ A
Sbjct: 243 EQAGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKGSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSNLAIQACKNKLETITKD 330
>gi|167573518|ref|ZP_02366392.1| DNA modification methylase RsrI [Burkholderia oklahomensis C6786]
Length = 301
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + ++ LP S+DLI ADPPY L + + DK S + +
Sbjct: 34 LHNRDFLTEAASLPDASIDLIVADPPYGLGKDYG-------------NDSDK-RSGDEHL 79
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+TR WL LK +G+++V ++ I + L ++N+I+W + P
Sbjct: 80 AWTREWLDLAIPKLKSSGSMYVFCTWQYAPEIFSFL-KTKLTMVNEIIWDRRVPSMGGTT 138
Query: 143 RRFQNAHETLIWAS 156
RRF + H+ + + +
Sbjct: 139 RRFTSVHDNIGFFA 152
>gi|91214055|ref|YP_544041.1| hypothetical protein UTI89_C5110 [Escherichia coli UTI89]
gi|91075629|gb|ABE10510.1| hypothetical protein UTI89_C5110 [Escherichia coli UTI89]
Length = 350
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP S+DLI DPPY + + W E Y
Sbjct: 12 LINADCLHFIQSLPDDSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDHCLAQFWRVLKPAGSLYLFCG-HRLASDIEVMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 267 YTDVWMHKPVQFYPGK--HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALG 324
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R +G+E++ + + K I
Sbjct: 325 RRALGVELESERFNQTVKEINE 346
>gi|169334193|ref|ZP_02861386.1| hypothetical protein ANASTE_00591 [Anaerofustis stercorihominis DSM
17244]
gi|169258910|gb|EDS72876.1| hypothetical protein ANASTE_00591 [Anaerofustis stercorihominis DSM
17244]
Length = 685
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
N+ + ++ I G+++ L+ L V I+ DPPYN +G D+ A
Sbjct: 85 NNKPENKDSQNIYISGDNLDGLKHLLKSYAHQVKCIYIDPPYNTGSDG-FVYNDNFNFSA 143
Query: 68 --------VTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ + + +S A+ F + LL R +L +G +++ +
Sbjct: 144 EELSTKLSIDEEQAQRILDLTKSGSASHSAWLMFMYSRLLLARDLLTDDGVIFISIDDNE 203
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + ++ ++ HE L + +
Sbjct: 204 QSNLKLICDDVFGEENFVANIIVQANKRGQTYKQLAKTHEYLFVYTKN 251
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 5/100 (5%)
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC-----SGSERLRNKDG 200
+ K D+ D + GS+ L +
Sbjct: 363 KKNTGEYGCYEKYRKGTFKAKTIWYEDDLVGDLSGEDDDIWEETNVITEQGSKELTAYEM 422
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
KP L+ ++ + GDI LD F GS +S
Sbjct: 423 GDAFDFPKPTYLIKKVFHIGSNDGDICLDFFSGSASSFEA 462
>gi|330445064|ref|ZP_08308717.1| DNA methylase family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489255|dbj|GAA03214.1| DNA methylase family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 347
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + + L+ LP SVDL+ DPPY +A + W SF
Sbjct: 12 QLVNADCLDYLKTLPDSSVDLVLTDPPYF-----------QVKKNAWDNQWPDVESF--- 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS 107
A+ L+ RVLKP+G+L++
Sbjct: 58 LAWLDEVLVEFWRVLKPSGSLYLFCG 83
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HP +KP LL ++ +S++ I+LD F GSG++G V +K+ R FIGIEM+
Sbjct: 285 HPCEKPADLLEHVIAASSREDAIVLDAFMGSGSAGKVCRKMNRQFIGIEME 335
>gi|117924549|ref|YP_865166.1| nuclease [Magnetococcus sp. MC-1]
gi|117608305|gb|ABK43760.1| ParB domain protein nuclease [Magnetococcus sp. MC-1]
Length = 444
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/265 (17%), Positives = 88/265 (33%), Gaps = 45/265 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDL------IF--ADPPYNLQLNGQLY--RPDHSLVDAVT 69
+ +++ G+S++ P + L I DPPY + +G + + +++
Sbjct: 175 EHRLLCGSSLN-----PDDVIRLMNGERAILFATDPPYLVDYDGTNHPGSKETRKRESLN 229
Query: 70 DSW---------DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
W D E Y+ F R + PN + + + + +
Sbjct: 230 KDWSDSYGVTWDDSSQGPELYEGFIRTAIDHAIE---PNAAWYCWHASKRQAMLEAVWEK 286
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + I+W K + + + A+ +
Sbjct: 287 MGAFQHQQIIWNKEKGVLTRSKYLW-----------KHEPCLMGWIKGNMPPKADGAEFL 335
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ W I SG ER HPT KP + + + G + +PF GSG+
Sbjct: 336 STVWDIQGLSGDERP-------DHPTPKPLDCFAIPMRQHVERGGLCYEPFSGSGSQIMA 388
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
+ R +E+ Y+D+A KR
Sbjct: 389 GEMTGRRVHAMEISPIYVDVAVKRF 413
>gi|254510701|ref|ZP_05122768.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
gi|221534412|gb|EEE37400.1| DNA methylase [Rhodobacteraceae bacterium KLH11]
Length = 386
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 52/210 (24%)
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-------------- 157
R +Q +W+ ++I+W K NPMP R +HE + +
Sbjct: 159 NRFAIAMQEWGWWVRSEIIWAKPNPMPESIKDRPATSHEKIFMFTKEGRYDYDAQAVRTG 218
Query: 158 ---------------------------SPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ K + N+ S
Sbjct: 219 RKSDEDANGFRGGSYVGGKPGARTAVGNKKTDKQRGHSRRHAGFNDHWDAMSKEEQQSNG 278
Query: 191 GSER-----------LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ R + + ++ H P L+ R L + G +LDPF G+GT+G
Sbjct: 279 RNLRNYEPAPVQVWEIATRPFKEAHFATFPPELVERCLKAGCPQGGKVLDPFGGAGTTGL 338
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
VA +L+ IE+ +Y DIA +RI S Q
Sbjct: 339 VADRLQMDATLIELNPEYADIAIRRIESDQ 368
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/222 (17%), Positives = 62/222 (27%), Gaps = 39/222 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++++G+ + +L LP D + PPY + V + +
Sbjct: 5 RVLQGDVLDMLATLPDDHFDCVVTSPPYWGLRDY-----------GVEGQIGLEPTLAEH 53
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIF----RIGTMLQNLNFWILND--------- 128
RVL P GT WV R +
Sbjct: 54 LDVMVRVFAEVHRVLNPTGTCWVNYGDCYATAPNGRTAADTKAAGNDDRTFRDKPFSTVG 113
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ +P RG+ +NA + S + GY D + N +
Sbjct: 114 PICADGSPSSTTRGQNGKNA-KGQTGNSKRIMSGGYLKPKDLVMVPN--RFAIAMQEWGW 170
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRI------LVSSTKPG 224
SE + K P PE++ R + TK G
Sbjct: 171 WVRSEIIWAK------PNPMPESIKDRPATSHEKIFMFTKEG 206
>gi|187732924|ref|YP_001880706.1| DNA methylase [Shigella boydii CDC 3083-94]
gi|187429916|gb|ACD09190.1| DNA methylase [Shigella boydii CDC 3083-94]
Length = 391
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + + LP SVDLI DPPY + + W + Y +
Sbjct: 55 DCLEFIWSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYLKWLD 100
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
L RVLKP G+L++ H + ++ F +LN I+W K + N +
Sbjct: 101 QCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCNKESL 159
Query: 147 NAHE 150
A+
Sbjct: 160 RAYF 163
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ + ++PGD+I D F GSG++ A L
Sbjct: 306 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISAGSRPGDLIADFFMGSGSTVKAALALG 363
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ + +
Sbjct: 364 RRAIGVELETERFEQT 379
>gi|71274670|ref|ZP_00650958.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71901601|ref|ZP_00683682.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|170730091|ref|YP_001775524.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
gi|71164402|gb|EAO14116.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71728649|gb|EAO30799.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|167964884|gb|ACA11894.1| site-specific DNA-methyltransferase [Xylella fastidiosa M12]
Length = 173
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 68/174 (39%), Gaps = 22/174 (12%)
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
RV +P G L V + + + +Q+ + +VW K+ GR A E ++
Sbjct: 20 RVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKTPACRPQLGRFRSQA-EFIV 78
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
WAS M G EK H KP AL+
Sbjct: 79 WASCGL--------------------MNPKAHPVTPVGVFATGTAPREKRHQVGKPLALM 118
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
++ P +LDPF GSGT+G A + FIG+E+ Y D+A +R+A
Sbjct: 119 EHLIKIV-PPTSTVLDPFAGSGTTGVAALRAGHQFIGMEISPWYCDVAKQRLAD 171
>gi|322514324|ref|ZP_08067377.1| type III restriction-modification system methyltransferase
[Actinobacillus ureae ATCC 25976]
gi|322119778|gb|EFX91812.1| type III restriction-modification system methyltransferase
[Actinobacillus ureae ATCC 25976]
Length = 586
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 61/211 (28%), Gaps = 23/211 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP----------------- 60
+ +I+G ++ VL+ L S+ +I+ DPPYN +
Sbjct: 67 NILIEGENLDVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQSQTDYQAQTGEIGE 126
Query: 61 DHSLVDAV-TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML- 118
D L A ++ + + L R +LK +G +++ + ++ +
Sbjct: 127 DGFLKKAFRKNAKENGHFHSNWLNMMLPRLHLARNLLKDDGVIFISIDDNEQAQLKLLCG 186
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ V K + F L+ S + F N
Sbjct: 187 EVFGEENFVANVIWKHTEQNKNDEKYFSRQFNYLLVYKKSNALNKFRFPRTEQDNVNY-S 245
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D SG R N P
Sbjct: 246 NPDNDPKGKWRSGDVRSPNFRKTLCFNITTP 276
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKK------LRR 246
+++ + T KP L RI+ D ++LD F GS T+ + R
Sbjct: 345 EIKDIFENAIFDTPKPTRFLKRIMELFHFDKDYLVLDFFAGSSTTAHAVMQLNAEDNGNR 404
Query: 247 SFIGIEM 253
FI +++
Sbjct: 405 RFICVQL 411
>gi|317495340|ref|ZP_07953710.1| DNA methylase [Gemella moribillum M424]
gi|316914762|gb|EFV36238.1| DNA methylase [Gemella moribillum M424]
Length = 295
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 25/176 (14%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDH 62
L + N+ ++ I G+++ L+ L V I+ DPPYN +G PD+
Sbjct: 81 PLTEHNNKEENKNSENLYIIGDNLDALKHLLKSYSRKVKCIYIDPPYNTGSDG-FVYPDN 139
Query: 63 SLVDAVT---------------DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
D++T S+ A+ F L+ R +L G +++
Sbjct: 140 FKFDSMTLSNKMGIDEEEAERIIDMRGKSTHSAWLTFMYPRLILARELLTDEGIIFISID 199
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF---QNAHETLIWASPSPK 160
+ + + + + K + N RGR + N HE L+ S
Sbjct: 200 DNEQSNLKIVCDEIFG---EENFAGKITVVNNPRGRDYGGIANMHEYLLVYKKSYN 252
>gi|124514229|gb|EAY55744.1| putative DNA methylase [Leptospirillum rubarum]
Length = 263
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+++ HPT KP AL+ + T G +ILDPF GSG++G A F+GI+++++
Sbjct: 188 DRNLRNHHPTVKPTALMRWLCRLVTPAGGLILDPFMGSGSTGKAAVLEGFRFVGIDVEEE 247
Query: 257 YIDIATKRIASVQPLG 272
Y+ IA RI +
Sbjct: 248 YVRIAEVRIKHACGID 263
>gi|291528646|emb|CBK94232.1| DNA modification methylase [Eubacterium rectale M104/1]
Length = 307
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/253 (19%), Positives = 88/253 (34%), Gaps = 29/253 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+++G+ L + S+D IF D P L + +F YD
Sbjct: 66 VLEGDGRD-LSIIEDNSIDCIFTDHP-WLDIKSNK---------------GGTRAFAVYD 108
Query: 83 AF--TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
F T RVLK L + N + Q + ++
Sbjct: 109 CFKYTLDDFKEKARVLKDGCFLVEVLPAENENNYEYLYQIKQYAKEAGFIYYSKVAWK-- 166
Query: 141 RGRRFQN------AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+G N + ++ S + ++P +
Sbjct: 167 KGTFVSNTGRKAKNTQDIMIFSKGKARNMRIDTKRTEQTGKLTYMSGCKGMLPTMFDVQP 226
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ K+ ++H ++ P +L +IL T G+++LD F GSG G A L+R+ I IE+
Sbjct: 227 VSKKN--RIHQSELPVSLCEQILEFLTYEGEVVLDSFAGSGAVGEAALNLKRNCILIEIL 284
Query: 255 QDYIDIATKRIAS 267
+D I+ KR +
Sbjct: 285 KDNIEKIKKRFEN 297
>gi|72536117|gb|AAZ73166.1| PstII restriction-modification enzyme Mod subunit [Providencia
stuartii]
Length = 561
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 18/145 (12%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ ++ +I G+++ L+ L + + ++ DPPYN + Y D
Sbjct: 36 DDSENLLIHGDNLLALKALEHDYSGKIKCVYIDPPYNTGTAFESY--------------D 81
Query: 74 KFSSFEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ + R L R+L NG L + + + + + ++
Sbjct: 82 DGLEHSMWLSMMRDRLEIIWRLLSSNNGVLLISINDDELHYLKVLCDDVFGRDKFIANLI 141
Query: 133 KSNPMPNFRGRRFQNAHETLIWASP 157
+ + N HE ++ S
Sbjct: 142 WNYEGNTDNQAKIINYHEYILVYSK 166
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S + RL KP L+S ++ + T DIILD F GSGT+G
Sbjct: 300 HFVSVLRGFGTTNQMRLMLSKIGIKFTYPKPVNLISYLIEAFTGENDIILDSFAGSGTTG 359
Query: 239 AVAKK------LRRSFIGIEMKQDYID-IATKRIA 266
+ R FI IE+K++ +D + R+
Sbjct: 360 HAVLQLNKNKSTNRKFILIELKKETVDSVIIPRLQ 394
>gi|291288949|ref|YP_003517452.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
gi|290792081|gb|ADD63407.1| adenine-specific methyltransferase [Klebsiella pneumoniae]
Length = 176
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 19/178 (10%)
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RVLK + + S++ + R + F+ + +V+ + +
Sbjct: 1 MYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVF--------------TKNYAS 46
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ + + + A A L + G LHPTQKP
Sbjct: 47 NRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPF-----PYTGNTLHPTQKPVE 101
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
L ++ S + PG I+LDPF GSG++ A + R +IGIEM Y T+R+A++
Sbjct: 102 ALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAGTERLAAMH 159
>gi|291460838|ref|ZP_06600218.1| type III restriction-modification system EcoP15I, modification
subunit [Fusobacterium periodonticum ATCC 33693]
gi|291380430|gb|EFE87948.1| type III restriction-modification system EcoP15I, modification
subunit [Fusobacterium periodonticum ATCC 33693]
Length = 339
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 19/166 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I+G+++ VL+ L + +I+ DPPYN + ++
Sbjct: 84 EESKNWDSTENIYIEGDNLEVLKLLQKSYHGKIKMIYIDPPYNTGKDFVYKDNFTDNIEN 143
Query: 68 VTDSWDK---------------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + L R +L +G +++ +
Sbjct: 144 YKKVTGQVSEEGTKLTTNTDTDGRYHSNWLNMMYPRLKLARNLLTDDGVIFISIDDNEQA 203
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + ++ + N G Q E I
Sbjct: 204 NLKKICDEIFGEENFIGLISNVTGASQNGEGVILQKNIEYCIVYCK 249
>gi|163756940|ref|ZP_02164047.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
gi|161323059|gb|EDP94401.1| DNA methylase N-4/N-6 domain protein [Kordia algicida OT-1]
Length = 639
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 22/142 (15%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLE-------KLPAK-SVDLIFADPPYNLQLN 54
++ ++ +N+ + ++ +IKG+++ L KLP V I+ DPPYN
Sbjct: 91 EEFTIQEIDNEEDALDIENMLIKGDNLLALNTLKKHFDKLPDNEKVKCIYIDPPYNTGSA 150
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
D +D + R L ++ L+ +GT+++ + +
Sbjct: 151 F--------------DHYDDNFKHSEWLTLMRDRLTILKKTLQDSGTIFISIDNEELPYL 196
Query: 115 GTMLQNLNFWILNDIVWRKSNP 136
++ ++ +
Sbjct: 197 MVLMDDIFGKENRKNIITLKRG 218
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 176 EDVQMRSDWLIPICSG--SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ S+ L I L N+ G +KPE LL R++ T GD +LD F G
Sbjct: 380 DGKLSFSEPLSDIWMDTLPNDLHNEGGVDFRKGKKPEKLLQRLIELVTDEGDTVLDIFGG 439
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
SG++ A K+ R +IG+E+ R+++V +
Sbjct: 440 SGSTFGTAHKMNRKWIGVEIGNHAETHIIPRLSAVLKGTDTS 481
>gi|254458814|ref|ZP_05072238.1| type III restriction-modification system StyLTI enzyme mod
[Campylobacterales bacterium GD 1]
gi|207084580|gb|EDZ61868.1| type III restriction-modification system StyLTI enzyme mod
[Campylobacterales bacterium GD 1]
Length = 550
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 19/220 (8%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
+ N++ N +I + +I+G++ + VL +D+I+ DPPYN + +
Sbjct: 45 IPILNNIKTNTISTNILRPSNILIEGDNYHSLQVLNYTHNGKIDVIYIDPPYNTKNKDFI 104
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y D D+ D + + F L +L G +++ + + R+ +
Sbjct: 105 Y------NDTYVDAEDGYK-HSKWLNFMEKRLRLAHNLLTEKGVMFISIDDNEMPRLNLL 157
Query: 118 LQNLN-----FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK---AKGYTFNYD 169
+ + + D+ + + + HE +I + K D
Sbjct: 158 CKKIFGENNVETYIWDLRDFEESSFTKTASHTVRFEHEYIIACYKNNKKLSRFTEYRFKD 217
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+N D R +W+ S + +++ G K P
Sbjct: 218 REDFSNIDNDPRGEWMSGNISRN-GIKSTSGSKYFTITTP 256
>gi|163868946|ref|YP_001610175.1| type III restriction system methylase [Bartonella tribocorum CIP
105476]
gi|161018622|emb|CAK02180.1| type III restriction system methylase [Bartonella tribocorum CIP
105476]
Length = 621
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 58/194 (29%), Gaps = 22/194 (11%)
Query: 13 QNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ +W ++ I+G+++ VL+ L + V +I+ DPPYN + +
Sbjct: 78 KKESVDWDTTQNLFIEGDNLEVLKLLQKPYHRQVKMIYIDPPYNTGNDFVYKDDFKDGIQ 137
Query: 67 AVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ + + + L R +L+ +G +++ + +
Sbjct: 138 NYLEMTRQLDNEGKRIGTNSSSAGRYHTNWLNMMYPRLKLARNLLRDDGVIFISIDDNEV 197
Query: 112 FRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + + HE ++ S +
Sbjct: 198 HNLRKLCDEVFGEENFIAQLIWRRRAPSGMSENNVSIDHEYVLCYQRSGIFEFMGRKKIF 257
Query: 171 LKAANEDVQMRSDW 184
K N D R W
Sbjct: 258 DKYQNPDNDPRGPW 271
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 15/130 (11%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM-- 253
+ KP +LL+ +L T D+ILD F GSGT+ +L R I +++
Sbjct: 376 NIFDYSKPISLLTTLLKQITTKDDLILDFFAGSGTTAHAVMQLNAEDGGKRRCISVQLPE 435
Query: 254 ----KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
K + K IA + L K E + A E G I G +
Sbjct: 436 PTDEKSEAFKAGYKNIAEI---SKERLRRAGKKIKEEQSAQLDFNENGGIDTGFKVFKLD 492
Query: 310 GNISATVCAD 319
+ AD
Sbjct: 493 SSNIKRWEAD 502
>gi|308185115|ref|YP_003929248.1| type IIS restriction enzyme R protein (MBOIIR) [Helicobacter pylori
SJM180]
gi|308061035|gb|ADO02931.1| type IIS restriction enzyme R protein (MBOIIR) [Helicobacter pylori
SJM180]
Length = 587
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 24/191 (12%)
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
+K G+ ++ + N L+ LN I W K + N + R +A E+
Sbjct: 1 MLPKIKDTGSFYIFNTPFNCALFLAYLRQKKAHFLNFITWVKKDGFANAKKRY-NHAQES 59
Query: 152 LIWASPSPKAKGYT-----------------------FNYDALKAANEDVQMRSDWLIPI 188
+++ S K + N + W I
Sbjct: 60 ILFYSMHKKNYTFNADEVRTAYESTERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITS 119
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
E+ K + HP+ KP+AL+ R++ +S+ D+ILD F GSG VAK L R+F
Sbjct: 120 QRHVEKENGKILKPKHPSIKPKALIERMIKASSNENDLILDLFSGSGMISLVAKSLGRNF 179
Query: 249 IGIEMKQDYID 259
IG E +Y+
Sbjct: 180 IGCETHVEYVH 190
>gi|227503681|ref|ZP_03933730.1| site-specific DNA-methyltransferase [Corynebacterium accolens ATCC
49725]
gi|227075717|gb|EEI13680.1| site-specific DNA-methyltransferase [Corynebacterium accolens ATCC
49725]
Length = 416
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 5/152 (3%)
Query: 21 DKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ I +++ VL+ + ++ D+I+ DPPYN + + + + S+ ++
Sbjct: 52 NSIHLADNLPVLQHWASTGETFDVIYIDPPYNTGRDFVYRDNYRARREVKSGSYAQW--H 109
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + L+ RRVL NG ++V IG + + K
Sbjct: 110 AEWLSMMLPRLILARRVLAENGFIFVSIGEDEAANTRKVLDEVFGEGCYAGQFIWKKAGT 169
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ HE ++ + +P G+ + +
Sbjct: 170 GKNDSKYAVVEHEYILCYAKNPDNPGFNLDAE 201
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ KP L+ ++ +LD F GSGT+ +L R
Sbjct: 320 IFEFPKPVRLIKHLIAIGGGVDARVLDFFAGSGTTAQAVIELNR 363
>gi|163798191|ref|ZP_02192125.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
gi|159176528|gb|EDP61108.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
Length = 458
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 31/270 (11%)
Query: 20 KDKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDK 74
+ +++ G+S ++ L + DPPY + +G + + + +WD
Sbjct: 198 EHRLLCGDSTKPEDVQHLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSQSYGVTWDD 256
Query: 75 F-SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ YD F A + + + + + + + ++ I+W K
Sbjct: 257 SSQGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQGMLEACWEKAGAFVHQQIIWVK 313
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ +H + + D + S W +P + E
Sbjct: 314 DRGV-------LTRSH-----YLWKHEPCFMGWRRPNRPPKVADETLASTWELPSFAKDE 361
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R HPT KP + G + +PF GSG+ + R +E+
Sbjct: 362 RP-------DHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEI 414
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKR 283
Y+D+A +R G + G +
Sbjct: 415 SPAYVDVAIER--WQAETGREAILDGDGGK 442
>gi|261837517|gb|ACX97283.1| adenine methyltransferase [Helicobacter pylori 51]
Length = 343
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 102/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V + ML
Sbjct: 63 SDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFRNEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICSG--- 191
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRHWRTDVATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 192 ---SERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 243 EQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSCLAIQACKNKLETIAKD 330
>gi|306836046|ref|ZP_07469036.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium accolens ATCC
49726]
gi|304568073|gb|EFM43648.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium accolens ATCC
49726]
Length = 416
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 5/159 (3%)
Query: 14 NSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+S+ + + I +++ VL+ ++ D+I+ DPPYN + + + + S
Sbjct: 45 SSVTDSPNSIHLADNLPVLQHWVTSGETFDVIYIDPPYNTGRDFVYRDNYRARREVNSGS 104
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILNDIV 130
+ ++ + + L+ RRVL NG ++V IG + +
Sbjct: 105 YAQW--HAEWLSMMLPRLILARRVLAENGFIFVSIGEDEAANTRKVLDEVFGEGCYAGQF 162
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
K + HE ++ + +P G+ + +
Sbjct: 163 IWKKAGTGKNDSKYAVVEHEYILCYAKNPDNPGFNLDAE 201
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ KP L+ ++ +LD F GSGT+ L R
Sbjct: 320 IFEFPKPVRLIKHLIAIGGGDDARVLDFFAGSGTTAQAVIDLNR 363
>gi|315654977|ref|ZP_07907882.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
gi|315490938|gb|EFU80558.1| adenine specific DNA methylase [Mobiluncus curtisii ATCC 51333]
Length = 644
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/237 (14%), Positives = 75/237 (31%), Gaps = 21/237 (8%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ ++ S + + II G+++ L+ L VD+I+ DPPYN G +
Sbjct: 24 LERQYSFDTDGQHKVDNGSNNMIIHGDNLEALKSLLPRYDGQVDVIYIDPPYNTGNEGWV 83
Query: 58 YRPDHSLVDAVTDSW------DKFSSFEAYDAF---TRAWLLACRRVLKPNGTLWVIGSY 108
Y + ++ D W + +D + L +R+L P G +++
Sbjct: 84 Y--NDAVNDPQIKKWLGEVVGKEGEDLSRHDKWLCMMYPRLRLLQRLLAPTGAIFISIDD 141
Query: 109 HNIFRIGTM-LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY--- 164
+ + + + + + + E L+ S P +
Sbjct: 142 NEAANLRLIGNEIFGARCFVADISWQRTYSTRNDSKGIPAEVEHLLVFSKQPDWQPNKLE 201
Query: 165 -TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
T D+ ++ + G+ + HP LL + +
Sbjct: 202 RTAEMDSKYKNPDNDRSPWRTDNAFAPGARTHQGMVYAIQHP--FTGELLYPAINNC 256
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 23/156 (14%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + W ++ + + DG T KP L+ R+L ++ P I+LD
Sbjct: 348 GGLLPTNYWSHVEAGHTDEAKKEIQELFDGAVAFDTPKPTRLIERVLKVASSPHSIVLDS 407
Query: 231 FFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
F GSGT+ R FI +E+ + +R+ V T ++
Sbjct: 408 FAGSGTTAHAVLSLNKKDGGNRQFILVELGDYADSVTAERVKRVA-------RGYTATKS 460
Query: 285 EPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
++ + +++ G+ + A ADG
Sbjct: 461 VKTTLYDEKLTTAMLKKGEKVF-----AEAKAIADG 491
>gi|227833763|ref|YP_002835470.1| hypothetical protein cauri_1939 [Corynebacterium aurimucosum ATCC
700975]
gi|262184838|ref|ZP_06044259.1| hypothetical protein CaurA7_12648 [Corynebacterium aurimucosum ATCC
700975]
gi|227454779|gb|ACP33532.1| hypothetical protein cauri_1939 [Corynebacterium aurimucosum ATCC
700975]
Length = 261
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/245 (21%), Positives = 86/245 (35%), Gaps = 39/245 (15%)
Query: 39 SVDLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDK--FSSFEAYD--AFTRAWLL 90
L+ AD PY+L N P + ++ K F + + + F
Sbjct: 18 KAQLLVADIPYSLGTNAYGSSPAWYIGGDNKNGESELAGKQFFDTDKDFRVPEFMHFASK 77
Query: 91 ACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF-- 145
R K G + V S+ + + F ++V+RK +
Sbjct: 78 MLRPEPKAKGQAPCMIVFCSFEQQIPLIEEAKRYGFKNYINLVFRKPTSPQVLKANMRVV 137
Query: 146 QNAHETLIWAS----PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
NA LI N A + +
Sbjct: 138 GNAEYALILYRDKLPKFNNHGHMIMNVQDW--AKDGKHIP-------------------- 175
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HPTQKP AL+ R++ T PGD+++DP GSG++ A+ L R G E+K+D+
Sbjct: 176 KVHPTQKPVALIERLIELFTDPGDVVIDPCAGSGSTLVAAENLGRRGYGFEIKKDFCRAF 235
Query: 262 TKRIA 266
+++
Sbjct: 236 ERQMR 240
>gi|254524665|ref|ZP_05136720.1| type III restriction system methylase [Stenotrophomonas sp. SKA14]
gi|219722256|gb|EED40781.1| type III restriction system methylase [Stenotrophomonas sp. SKA14]
Length = 666
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 20/121 (16%)
Query: 18 EWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--- 68
+W+ + +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 98 DWETTQNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLEL 157
Query: 69 -----------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+++ + L + +L +G + + + +
Sbjct: 158 TGQVEGGQRISSNTEASGRFHTDWLNMMYPRLKLAKNLLLDSGLIIISIDSSEATNLRLI 217
Query: 118 L 118
+
Sbjct: 218 M 218
Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEMKQDYID 259
KP +L+ + P DIILD F G+GT+G + R FI +++ Y+D
Sbjct: 419 PKPRSLIRDFVTIGASPQDIILDFFAGTGTTGHAVMAQNFLDEGNRRFILVQL-PQYLD 476
>gi|160899639|ref|YP_001565221.1| DNA methylase N-4/N-6 domain-containing protein [Delftia
acidovorans SPH-1]
gi|160365223|gb|ABX36836.1| DNA methylase N-4/N-6 domain protein [Delftia acidovorans SPH-1]
Length = 661
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 20/121 (16%)
Query: 18 EWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--- 68
+W+ + +I+G+++ VL+ L V LI+ DPPYN + +
Sbjct: 93 DWETTQNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLEL 152
Query: 69 -----------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+++ + L + +L +G + + + +
Sbjct: 153 TGQVEGGQRISSNTEASGRFHTDWLNMMYPRLKLAKNLLLDSGLIIISIDSSEATNLRLI 212
Query: 118 L 118
+
Sbjct: 213 M 213
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEMKQDYID 259
KP +L+ + T P DIILD F G+GT+G + R FI +++ Y+D
Sbjct: 414 PKPRSLIRDFVTIGTSPQDIILDFFAGTGTTGHAVMAQNFLDEGNRRFILVQL-PQYLD 471
>gi|269124154|ref|YP_003306731.1| Site-specific DNA-methyltransferase (adenine- specific)
[Streptobacillus moniliformis DSM 12112]
gi|268315480|gb|ACZ01854.1| Site-specific DNA-methyltransferase (adenine- specific)
[Streptobacillus moniliformis DSM 12112]
Length = 528
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 11/172 (6%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +++G+++ L+ L +D+I+ DPPYN +Y D D D S
Sbjct: 83 NFLLEGDNLHSLKLLEKTHKGKIDVIYIDPPYNTGNKDFIYD------DCFVDKTD-GYS 135
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
+ +F LL R +L G +++ + ++ + ++S
Sbjct: 136 HSKWLSFMEKRLLIARELLSDEGVIFISIDDNEQAQLRLLCDSVFGEDNFIGEYIKQSKV 195
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ HE + + A + + SD
Sbjct: 196 GGGNDSKFIVKEHEYCKCYAKNINATRPMNIKHNAEYLKRYKEEDSDGKYFW 247
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 9/183 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ R G + + D + + + + A + F
Sbjct: 247 WDTFARPGLKNPIIYDIVAPDGSVINNGWIRSKERFDKEYAEGKIRLLKKKNGQWSVQFK 306
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
M D G L+N G+K+ K L +L + I+
Sbjct: 307 QYLNMDGKTPRSMTMD-FGGTTDGDSELKNIFGKKIFNYPKSIKYLKTLLSTINNKEVIV 365
Query: 228 LDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRIASVQPLGNIELTVL 279
LD F GSGT+G + R +I ++ I ++ +R+ ++Q L
Sbjct: 366 LDFFAGSGTTGHAVMQLNKEDGGNRKYILCTNNENNICEEVTYQRLKNIQEDLPHNLKYY 425
Query: 280 TGK 282
+
Sbjct: 426 KTE 428
>gi|145640734|ref|ZP_01796317.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
R3021]
gi|145274660|gb|EDK14523.1| twin-argninine leader-binding protein DmsD [Haemophilus influenzae
22.4-21]
Length = 381
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 75/223 (33%), Gaps = 32/223 (14%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + + ++ IIKGN++ L L + LI+ DPPYN + Y
Sbjct: 186 KQPVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGEDSFKYN- 244
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF S + F + L + +L +G ++V Y+ + +L
Sbjct: 245 ------------DKF-SHSTWLTFMKNRLEIAKTLLADDGVIFVHCDYNEDGYLRVLLDE 291
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ ++ V + + G + Q+ +T++ + + +
Sbjct: 292 IFTE--DNFVANIAIRSNSISGNKTQHKEKTILKNKDTILVYKKNSLKINPQYTIKQKWD 349
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
I I E KP+ LL ++ +
Sbjct: 350 THYNAILISEDGE-------------LKPKKLLDHLIENKNFK 379
>gi|329117582|ref|ZP_08246299.1| DNA (cytosine-5-)-methyltransferase [Streptococcus parauberis NCFD
2020]
gi|326907987|gb|EGE54901.1| DNA (cytosine-5-)-methyltransferase [Streptococcus parauberis NCFD
2020]
Length = 250
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 85/229 (37%), Gaps = 14/229 (6%)
Query: 41 DLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
LI AD PYNL N P + S + + K D + C R+L
Sbjct: 23 QLIIADIPYNLGNNAYASDPRWYENGSNKNGESKLAGKSFFDTDNDFKINNFFDFCARLL 82
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
K + M+ ++ ++ N + +
Sbjct: 83 KKE--------PKEKGQAPAMIVFHSWQQREMVIQCGKKHGFNNAYPLYFTKKSSPQVLK 134
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ K G T +A + + ++ + + ++ +HPTQKP +L R+
Sbjct: 135 ANMKIVGATE--EATVLYRDKLPKFNNNGSMVLNHMVWEKDSSYPTIHPTQKPIPVLKRL 192
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ T P D+++DP GSG++ A ++ R G E+K+D+ + A +
Sbjct: 193 IEIFTDPEDVVIDPVAGSGSTIRAAIEMNRCAYGFEIKKDFYNKAQSEM 241
>gi|308183495|ref|YP_003927622.1| putative type III restriction enzyme M protein [Helicobacter pylori
PeCan4]
gi|308065680|gb|ADO07572.1| putative type III restriction enzyme M protein [Helicobacter pylori
PeCan4]
Length = 633
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 20/152 (13%)
Query: 13 QNSIFEW-KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+N++ + + +IKGN++ L L K V I+ DPPYN + Y +
Sbjct: 157 KNALKDKNTNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN------- 209
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWIL 126
+ ++ F + L A R L +G ++V + + ++ + +
Sbjct: 210 -------FNHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFV 262
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
I+W + F+ HE + + +
Sbjct: 263 ASIIWANKEGGGKSDSKHFRQKHEYIHCFAKN 294
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 50/252 (19%), Positives = 86/252 (34%), Gaps = 13/252 (5%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIF---RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
W+ + ++ G + G +N + + G W + + N
Sbjct: 336 WIKSLDYPIELEGKTFYAGGDYNQWLDRQNGKARIKDWGWRWRWSKEKLEWGLKNDFIEI 395
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+N++ + N M + ++ +
Sbjct: 396 KENSNGEWNIYTKQYLNCDNDGNIKPRTLQ----PMALIEKHSNTQSNRHIKEMQLNFTY 451
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
KPEAL+ IL ST D++LD F GSGT+ AVA K++R +IGIE I +R
Sbjct: 452 S--KPEALIMDILNFSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKER 509
Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGT--- 321
+ V ++ G + + L E L QI + + D +
Sbjct: 510 LKKVIEGEQGGISKKCGFKGGGSFVYAELKEVNLEIKKQIFNAKSKSECLKIFNDLSKRF 569
Query: 322 LISGT-ELGSIH 332
L ++G IH
Sbjct: 570 LKHADCKIGEIH 581
>gi|251792313|ref|YP_003007038.1| modification methylase [Aggregatibacter aphrophilus NJ8700]
gi|247533705|gb|ACS96951.1| modification methylase (Adenine-specificmethyltransferase)
[Aggregatibacter aphrophilus NJ8700]
Length = 496
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 68/194 (35%), Gaps = 21/194 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I+G+++ L+ L +DLI+ DPPYN + +Y D D+ D +
Sbjct: 45 NFLIEGDNLHSLKLLEKTHRNKIDLIYIDPPYNRGKSDFIYD------DHYIDNNDGYK- 97
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ +F L R +LK G +++ + ++ + + + K
Sbjct: 98 HSKWLSFMSKRLDIARNLLKDTGLIFISIDDNEDSQLKLLCE---QIFSPENFINKFIWQ 154
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
N G+ ++ K +E+ + G+ RL
Sbjct: 155 RNSSGKTEKDKFTVNTEYVILFSKSNKYKLNPTYKPLSENTKKLYSKNDNDGRGNYRL-- 212
Query: 198 KDGEKLHPTQKPEA 211
+P QKP+
Sbjct: 213 ------YPLQKPKD 220
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 175 NEDVQMRSDWLI--PICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPF 231
NE ++ + W GS+ L N G+K KP +L+ R L + +ILD F
Sbjct: 278 NEGKRIDTLWNDISENTVGSKELENTLGKKEAFDNPKPLSLIKRCLEI-SNKNALILDFF 336
Query: 232 FGSGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRIASVQPLGNIELTVLTGKR 283
GSGT+G + R +I ++ I ++ +R+ ++Q L
Sbjct: 337 AGSGTTGHAVAQLNKEDGGNRQYILCTNNENNICEEVTYQRLKNIQAELPHNLKYFKTDF 396
Query: 284 TEPRVAFNLLVERGLI 299
+ + ++ L+
Sbjct: 397 IKKFDENDRTLKAQLM 412
>gi|284097522|ref|ZP_06385599.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
gi|283830966|gb|EFC34999.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
Length = 170
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
G+ + HP PE L ++S + PGD++ DPF GSGT +A+
Sbjct: 76 WEYKIGNGHSASDKIAHKHPAIFPEQLAQDHILSWSNPGDLVYDPFLGSGTVALMAEMNS 135
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNI 274
R+F+G E+ +Y +IA +R+ +
Sbjct: 136 RNFVGSEINANYCEIARERLKRSRMSPEQ 164
>gi|208435386|ref|YP_002267052.1| type III R-M system modification enzyme [Helicobacter pylori G27]
gi|208433315|gb|ACI28186.1| type III R-M system modification enzyme [Helicobacter pylori G27]
Length = 461
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 27/186 (14%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL R +LK +G +++
Sbjct: 134 FSQSNEEVLKQLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLARDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKG 163
+ ++ + S P+ + E +
Sbjct: 194 DNECAQLKLLCDEIFGEGNFVAQFIWHSKNKPSGNTTEDKTIDTRTEYIFCYQKYNFKAN 253
Query: 164 YTFNYD 169
N
Sbjct: 254 KHENTK 259
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 15/206 (7%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
YN + N + + F + Y L + ++
Sbjct: 248 YNFKANKHENTKEELEEKGYILKDEYFETRGHYK------LTPLMHSCSASSFQYIESLD 301
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMP-------NFRGRRFQNAHETLIWASPSPKA 161
+ I + I + +R + N + + +
Sbjct: 302 YEIQAPDGTWFKNHQNIKKEKSYRYTWSKKLFDFGNQNGFIEFQKTSDGFWCAYRKMYEL 361
Query: 162 KGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVS 219
+ + + G+ +RN +GEK+ KP L++R++
Sbjct: 362 CTIDNKKLQIIYRKSGNAYSNLITNLYSDIGANEVRNIFNGEKIFSYPKPLKLINRLIEL 421
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLR 245
ST GDIILD F GSGT+ +
Sbjct: 422 STNEGDIILDFFAGSGTTAHAVLESN 447
>gi|60202514|gb|AAX14643.1| DNA methyltransferase [Geobacillus stearothermophilus]
Length = 447
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ EK+H QKP L+ ++ T+ G +ILDPF GSGT+ AK+L R+FI E+ +
Sbjct: 365 TNEEEKVHDAQKPIELIKYLINIMTREGQVILDPFVGSGTTAVAAKELNRNFIAFEINEH 424
Query: 257 YIDIATKRIASVQPLGNI 274
Y +A KR+ +
Sbjct: 425 YHSLANKRLNQEIKKEHQ 442
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ--LYR 59
S+ + + N ++ + + +KII G+ L KLP SV + +D PY + L+ L+
Sbjct: 59 SELDKILNNSRESDLTPYLNKIILGDCTEYLSKLPKNSVHMFLSDIPYGINLDEWDVLHN 118
Query: 60 PDHSLVDAVT----------------DSWDKFSS--FEAYDAFTRAWLLACRRVLKPNGT 101
+S + + + W+K +AY + +W V+K
Sbjct: 119 NTNSALLGASPAQEGKSAFKRRGKPINGWNKEDRQINQAYHDWVYSWAQQLFPVMKEGAP 178
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ + G+ I ++ F + + + W KS+
Sbjct: 179 VLIFGARRTISSAIAAMEKAGFLLKDILAWEKSSAHH 215
>gi|169836906|ref|ZP_02870094.1| adenine specific DNA methylase Mod [candidate division TM7
single-cell isolate TM7a]
Length = 358
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/220 (13%), Positives = 70/220 (31%), Gaps = 27/220 (12%)
Query: 1 MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ +K ++ ++ + +W + I+G++++ L+ L V +I+ DPPYN +
Sbjct: 62 IQEKTVQTLHPDRANSVDWDTTGNMFIEGDNLAALKILHKAYYGKVKMIYIDPPYNTGND 121
Query: 55 G------QLYRPDHSLVDAVTDSWDK------------FSSFEAYDAFTRAWLLACRRVL 96
+ R + +TD + L R +L
Sbjct: 122 FIYNDDSKQTRRSYETEAGITDDEGNVVRDDGLRTNTGGHKHSNWLNMMYPRLFLARNLL 181
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL--I 153
+ +G ++V + + + M+ V + + F H+ + I
Sbjct: 182 RQDGVIFVSIDDNEVHNLRLMMNEIFGEENFVAQVIWEKVHTRKNSAQYFSYNHDYVVTI 241
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + +N D + W + +
Sbjct: 242 ARKKDEWKRKLIPRENNSAYSNPDNDPKGVWKLDPIYANN 281
>gi|320527418|ref|ZP_08028599.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
gi|320132131|gb|EFW24680.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
Length = 541
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 19/139 (13%)
Query: 6 SLAINENQNSIFEW--KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
+ I + S + ++ +I G+++ L+ L + I+ DPPYN + Y
Sbjct: 23 RILIEDKTKSFGDLSSENMLIHGDNLIALQALQQEFTGKIKCIYIDPPYNTGSAFEYY-- 80
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D + + +L +G L + +L
Sbjct: 81 ------------DDGLEHSEWLQMIYPRIQLLYELLADDGFLCCHIDDSESHYLKCVLDE 128
Query: 121 LNFWILNDIVWRKSNPMPN 139
+ + PN
Sbjct: 129 VFGRTNYLTSFYIQVRYPN 147
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PEALL IL + GD +LD F GSG++ AVA K+ R +IG+E+ + + RI +V
Sbjct: 342 PEALLKMILEYFSNEGDWVLDSFLGSGSTMAVAHKMNRKWIGVELGEHTYSLCKTRIDNV 401
Query: 269 QPLGNIELT 277
++
Sbjct: 402 INGDKTGIS 410
>gi|210135567|ref|YP_002302006.1| type III R-M system methyltransferase [Helicobacter pylori P12]
gi|210133535|gb|ACJ08526.1| type III R-M system methyltransferase [Helicobacter pylori P12]
Length = 625
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 17/157 (10%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 165 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNF--------------N 210
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L A R L +G ++V + + ++ +
Sbjct: 211 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVSCITHIVKP 270
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ HE ++ + + +
Sbjct: 271 EGRMYGQVAKTHEYILVYAKNINNLIFNEIEKEGHDF 307
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 13/163 (7%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ D + G+E ++ ++ KPEAL+SRIL +T D++LD F GSGT+
Sbjct: 415 KSIFWDKSMITQKGTEEVKQIFKTQIFDFPKPEALISRILEIATNENDLVLDFFAGSGTT 474
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
AVA K++R +IGIE I +R+ V ++ + + L E
Sbjct: 475 CAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVN 534
Query: 298 LIQPGQILTNAQGNISATV----------CADGTLISGTELGS 330
L QIL + + AD + E+ S
Sbjct: 535 LEIKRQILNAKSKSECLKIFNDLNERILKRADNKM---DEIHS 574
>gi|15611116|ref|NP_222767.1| putative type II DNA modification enzyme (methyltransferase)
[Helicobacter pylori J99]
gi|4154550|gb|AAD05627.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 103/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V Y + ML
Sbjct: 63 SDKVVGMDFMEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFRNEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICSG--- 191
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 192 ---SERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 243 EQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSDLAIQACKNKLETITKD 330
>gi|315587257|gb|ADU41638.1| methylase [Helicobacter pylori 35A]
Length = 632
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 19/145 (13%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 165 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 210
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSN 135
++ F + L R L +G ++V + + ++ + + I+W
Sbjct: 211 HSSWLVFMKNRLEVAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVASIIWANKE 270
Query: 136 PMPNFRGRRFQNAHETLIWASPSPK 160
+ F+ HE + + +
Sbjct: 271 GGGKSDSKHFRQKHEYIHCFAKNKD 295
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/252 (19%), Positives = 85/252 (33%), Gaps = 13/252 (5%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIF---RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
W+ + ++ G + G ++ + + G W + + N
Sbjct: 335 WIKSLDYPIELEGKTFYAGGDYDQWLDRQNGKARIKDWGWRWRWSKEKLEWGLKNDFIEI 394
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+N++ + N M + ++ +
Sbjct: 395 KENSNGEWNIYTKQYLNCDSDGNIKPRTLQ----PMALIEKHSNTQSNRHIKEMQLNFTY 450
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
KPEAL+ IL ST D++LD F GSGT+ AVA K++R +IGIE I +R
Sbjct: 451 S--KPEALIMDILNFSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKER 508
Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLIS 324
+ V ++ + ++ L E L QIL + + D
Sbjct: 509 LKKVIEGEQGGISKKCDFKGGGSFVYSELKEVNLEVKKQILNAKSKSECLKIFNDLNERF 568
Query: 325 ----GTELGSIH 332
++G IH
Sbjct: 569 LKRADCKIGEIH 580
>gi|186472281|ref|YP_001859623.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
phymatum STM815]
gi|184194613|gb|ACC72577.1| DNA methylase N-4/N-6 domain protein [Burkholderia phymatum STM815]
Length = 374
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/274 (16%), Positives = 88/274 (32%), Gaps = 40/274 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ +G+ L SV + DPPY L + + + V W SF+
Sbjct: 89 TLHQGDCFEWLASQKPSSVHAVVTDPPYGLVEYTAKETAKLRAGKGGV---WRIPPSFDG 145
Query: 81 YDAFTRAWLL-------------------ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ RV P + + + + +
Sbjct: 146 HQRAPLPRFTVLTDTDRQALHAFFKRFGTLIGRVAVPGANVVIASNPLLAHIVAEAMGLA 205
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF-----------NYDA 170
+ + M G R +NAHE S P+++ + +
Sbjct: 206 GLELRG---YIARQVMTMRGGDRPKNAHEEFDGVSVMPRSQWEPWVVLRKPLEGRVQDNL 262
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPEALLSRILVSSTK-PGDII 227
+ + S +K+ HP+ KP+A + +I+ + I+
Sbjct: 263 RRWGTGGFRRPSKERPFGDLIKSHPTPASEKKIAPHPSLKPQAFMRQIVRAVLPLEEGIV 322
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
LDPF G+G++ A A + G+E+ +++ +A
Sbjct: 323 LDPFMGAGSTLAAANAVGYQSCGVELDEEFFALA 356
>gi|219850188|ref|YP_002464621.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aggregans DSM 9485]
gi|219544447|gb|ACL26185.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
9485]
Length = 347
Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ + +W K N R G T +A+E
Sbjct: 202 GLYPYDRRIWVKDAAWENSRWASLSYRSVDEFEYLYFFWKPGITKFDRKRLSADEWKNWG 261
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
S G + + H + P L +R++ T PGDI+LD F GSGT+ A
Sbjct: 262 S-------RGVWYVPSVRANDDHEAKFPIELPTRVIRLLTDPGDIVLDCFMGSGTTAVAA 314
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ R +IGIE+ + Y+++A +RIA+
Sbjct: 315 IRENRQYIGIEILEKYVNLARQRIAAEH 342
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I G++ ++L + S+ L PPY + + + SFE
Sbjct: 42 NEIYVGDARALLPNIEPNSIALSVWSPPYFVGKEYEAHL-----------------SFED 84
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ R + ++KP G L + NI I I + V RK P+
Sbjct: 85 WQDLLRTVIHLHFPIIKPGGFLVI-----NIADILVFKDPSMPRIQAEAVTRKRCPV 136
>gi|319897460|ref|YP_004135657.1| type iii restriction-modification system hindvip enzyme mod
[Haemophilus influenzae F3031]
gi|317432966|emb|CBY81333.1| putative type III restriction-modification system HindVIP enzyme
mod [Haemophilus influenzae F3031]
Length = 723
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 19/185 (10%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + ++ ++ IIKGN++ L L V LI+ DPPYN + Y
Sbjct: 210 KQAVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGRVKLIYIDPPYNTGEDSFKYN- 268
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF S + F + L+ + +LK +G ++V + +
Sbjct: 269 ------------DKF-SHSTWLTFMKNRLVIAKELLKDDGLIFVQCDDKEQAYLKVFMDE 315
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + + M G + + + +I + L E
Sbjct: 316 VF--GRENFINTIAVKMSTPSGVKMSHVSKKIIKVKEHIICFAKNKDLIELTPQYEIKDE 373
Query: 181 RSDWL 185
Sbjct: 374 YDWEY 378
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+L ++ G + +KPE ++ IL +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 511 KLFSEGGVEFSNGKKPELIIKTILNLATNENDIVLDYHLGSGTTAAVAHKMNRQYIGIEQ 570
Query: 254 KQDYIDIATKRIAS 267
+A +R+
Sbjct: 571 MDYIETLAVERLKK 584
>gi|317013475|gb|ADU80911.1| putative type II DNA modification enzyme (methyltransferase)
[Helicobacter pylori Gambia94/24]
Length = 343
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/329 (16%), Positives = 104/329 (31%), Gaps = 79/329 (24%)
Query: 21 DKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + D
Sbjct: 3 NLLIQAENSIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISN-SKKGDIA 61
Query: 76 SSFE----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------ 119
S + + F + L+ + +L G+++V Y + ML
Sbjct: 62 YSDKVVGMNFIEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFRNEI 121
Query: 120 -----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNA 148
+ + + D++ S P + +
Sbjct: 122 TRIKCNPKNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYT 181
Query: 149 HETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICSG-- 191
+ S + K T + E + S+ P
Sbjct: 182 TVPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYA 241
Query: 192 ----SERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 242 LEQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAF 301
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 302 LLQRKFIGIDNSGLAIKACKNKLETITKD 330
>gi|163798248|ref|ZP_02192180.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
gi|159176496|gb|EDP61079.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
Length = 422
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/266 (16%), Positives = 85/266 (31%), Gaps = 29/266 (10%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKF- 75
+++ G+S V + + L DPPY + +G + + + +WD
Sbjct: 161 HRLLCGDSTKPEDVRRLMNGERAALFATDPPYLVDYDGSNHPTRNKDWSQSYGVTWDDSS 220
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ YD F A + + + + + + + ++ I+W K
Sbjct: 221 QGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKDR 277
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ +H + + D + S W +P + ER
Sbjct: 278 GV-------LTRSH-----YLWKHEPCFMGWRRPNRPPKVADDTLASTWELPSFAKDERP 325
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
HPT KP + G + +PF GSG+ + R +E+
Sbjct: 326 -------DHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEISP 378
Query: 256 DYIDIATKRIASVQPLGNIELTVLTG 281
Y+D+A +R G + G
Sbjct: 379 AYVDVAIER--WQAETGREAILDGDG 402
>gi|237750641|ref|ZP_04581121.1| LOW QUALITY PROTEIN: type IIS restriction enzyme M1 protein
[Helicobacter bilis ATCC 43879]
gi|229373731|gb|EEO24122.1| LOW QUALITY PROTEIN: type IIS restriction enzyme M1 protein
[Helicobacter bilis ATCC 43879]
Length = 156
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
K G N W I +++ K + HPT KP+ ++ R++
Sbjct: 47 HAKKNGILKNGKRWYPNENGKLCPDVWEITSQRHKQKINGKTQKLHHPTIKPKEMIERMI 106
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+S+K GD++LD F GSGT+ VA++L R+FIG E +Y+D
Sbjct: 107 KASSKKGDLVLDLFSGSGTTSLVARELERNFIGCEASIEYVD 148
>gi|308062782|gb|ADO04670.1| type III R-M system modification enzyme [Helicobacter pylori Cuz20]
Length = 445
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 67/171 (39%), Gaps = 25/171 (14%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDNFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
+ ++ + + + ++VW+ + N + L +A
Sbjct: 194 DNEAAQLKLLCDEIFGEDNFVANLVWKSKSGGANDSKNIITDQEYILCYAK 244
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/212 (18%), Positives = 65/212 (30%), Gaps = 21/212 (9%)
Query: 43 IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY---DAFTRAWLLACRRVLKPN 99
I D L + + + Y D F + +L
Sbjct: 232 IITD------QEYILCYAKNITNLNFDSVEYNEENLKLYNCQDEFFDERGPYRKMLLMQK 285
Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
G + + I + D + + ++ H
Sbjct: 286 GLSFSSSLTYEITA------PDGTTLKPDSKSKAIWRWSENKFKQGVKNHFIEFEKDKKG 339
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL------RNKDGEKLHPTQKPEALL 213
+ K YT Y + ++ +S+ + + RL R D K+ KP L+
Sbjct: 340 QWKIYTKQYLNMDYDGNRIERKSNLRSIVDNVDGRLGTRELQRLFDNLKIFSYPKPTKLI 399
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
SR++ ST GDIILD F GSGT+ +
Sbjct: 400 SRLIELSTNEGDIILDFFAGSGTTAHAVLESN 431
>gi|115289045|gb|ABI85533.1| M.Hin1056ModP-7A [Haemophilus influenzae]
Length = 342
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K ++ + ++ ++ IIKGN++ L L + LI+ DPPYN + Y
Sbjct: 186 KQAVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKIKLIYIDPPYNTGEDSFKYN- 244
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
DKF S + F + L + +L +G ++V Y+ + +L
Sbjct: 245 ------------DKF-SHSTWLTFMKNRLEIAKTLLADDGVIFVHCDYNEDGYLRVLLDE 291
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ ++ V + + G + Q+ +T+
Sbjct: 292 IFTE--DNFVANIAIRSNSISGNKTQHKEKTI 321
>gi|195867571|ref|ZP_03079574.1| adenine specific DNA methyltransferase [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|195660815|gb|EDX54069.1| adenine specific DNA methyltransferase [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
Length = 433
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 23/243 (9%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLP-----------AKSVDLIFADPPYNLQLNGQL 57
+N+ N + +I G + VL+ L D+I+ DPPYN + +
Sbjct: 80 MNDAHNLFKNDTNSLIIGENYDVLKNLLVLERERETSGRDAYYDVIYIDPPYNTEASKTD 139
Query: 58 YRPDHSLVDAVTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
D V + DKF S + L + +LK +G ++V + +
Sbjct: 140 GNNFSEKDDVVASKFVYRDKF-SRNGWLNMMNERLKLAKNLLKNDGVIFVSIDDNEQAYL 198
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
++ + + + HE ++ S + + +
Sbjct: 199 KVLMDEIFGEENFVTNFIWQKKSGGGLNKLIYEGHEYILCYSKNNYNFCLSEKNKKMSGF 258
Query: 175 --NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL----SRILVSSTKPGDIIL 228
+D S ++ + + KD + H + E L + + IL
Sbjct: 259 IKYKDKNNNSFFINSDIIRNNFGK-KDNKFEHRNKAYEDLSKEDKEKWNLKLDNKN-YIL 316
Query: 229 DPF 231
PF
Sbjct: 317 VPF 319
>gi|317132858|ref|YP_004092172.1| Site-specific DNA-methyltransferase (adenine-specific)
[Ethanoligenens harbinense YUAN-3]
gi|315470837|gb|ADU27441.1| Site-specific DNA-methyltransferase (adenine-specific)
[Ethanoligenens harbinense YUAN-3]
Length = 626
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 17/153 (11%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNG-----------QLYRPDHSLVD 66
+ I+G+++ VL+ L V +I+ DPPYN + +
Sbjct: 90 NLYIEGDNLEVLKLLQTSYYRKVKMIYIDPPYNTGNDFVYADDFADPMARYKEVTQQTTK 149
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWI 125
+ ++ +F + + L +L+ +G +++ + +
Sbjct: 150 SNPETMGRFHTN--WLNMMYPRLRLAANLLRDDGVIFISIDDGEQTNLRKLCDEVFGEEN 207
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + P + F +H+ ++
Sbjct: 208 FIAQIIWQKVYSPRMDVQGFSVSHDYILCYVKQ 240
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 16/149 (10%)
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD---ALKAANED 177
+ D G + + S T N A + E+
Sbjct: 289 WFPLMAPDGTEVYPVKPDGTEGCWRWSKGTYIENQSKGIVEWVQTENGWQVYAKQYLKEE 348
Query: 178 --VQMRSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDP 230
+ W + E L+ G K+ + KP+ L+ ++L ++T DIILD
Sbjct: 349 ATKPPETLWFHQEVGHNHAAMEELKKLLGAKVFDSPKPKNLIEKMLRIATTGDEDIILDF 408
Query: 231 FFGSGTSGAVAKK------LRRSFIGIEM 253
F GS T+ + R FI +++
Sbjct: 409 FSGSATTAHAVMQLNAEDGGNRRFILVQL 437
>gi|85813800|emb|CAF31853.1| putative 3-N-methyltransferase [Streptomyces hygroscopicus subsp.
hygroscopicus]
Length = 272
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/266 (14%), Positives = 79/266 (29%), Gaps = 35/266 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G++ L LP +SV L+ P + + + A+
Sbjct: 21 TLFHGDATVFLRALPERSVRLVVTSP----------------WFTGPCEPSSQDPTSPAF 64
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ +L RVL +G++ + + + D +
Sbjct: 65 GDWLDHYLAEMERVLLWDGSVVLETGGAWARDRPVRTVQHYAALSRLLERGDWYLLQEFY 124
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
N +E + + + + A + ++R L
Sbjct: 125 WYNPGLLEVNEEYEERRFNRLHDCVTTWFWLSRSPDAPADTRRVRGFQNHLTHPFGNFLA 184
Query: 197 NKDGEKLHPT--------------QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D P + P A + T+ G+ ++DPF G G++ A+
Sbjct: 185 LSDSWADQPYLEAAGERRSRADLDRFPVAAPLYFIRLLTEEGEHVVDPFAGIGSTALAAE 244
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASV 268
K R + ++ I IA +RI +
Sbjct: 245 KAGRRWSCNDISAAAISIAKQRIDTF 270
>gi|316997321|dbj|BAJ52769.1| type II DNA modification enzyme [Campylobacter lari]
Length = 672
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/317 (17%), Positives = 102/317 (32%), Gaps = 69/317 (21%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPY---NLQL 53
+S++N + ++ ++ E + +++K ++ L L +DLI+ DPPY N
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPYNTGNDGF 414
Query: 54 NGQLYRPDHSLVDAVTDSWD--------KFSSFEAYDAFTRAWLLACRRVL--------- 96
S + + + D S F + D +A L +
Sbjct: 415 VYTDKFNHSSWLAMMKNRLDLAKEFLKNSGSIFISIDDNEQARLKILCDEVFGEENFVAN 474
Query: 97 ----------KPNGTLWVIGSYHNIFR--------IGTMLQNLNFWILNDIVWRKSNPMP 138
+ + V Y NI+ G N++ + ++ + P+
Sbjct: 475 VIWRKRAGGGNDSNHIAVEQEYINIYAKNIEHLKTYGIARTNISHYKKDEKGYYLEKPLN 534
Query: 139 NFRGRRFQNAHETL------------IWASPSPKAKGYTFNYDALKAANEDVQMRSDW-- 184
+ + H + S D + N D +
Sbjct: 535 DTSLQDSPGLHYDIKLPSGKILKGSEHQWKVSENTFYSRLERDEIIFKNNDKVYYKHYID 594
Query: 185 -------------LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ + ++ K+ T KPE LL RI + ++LD F
Sbjct: 595 IASNLKPSSIWYDFVLNADATNEIKLNFENKIFDTPKPEKLLKRICDIGSNQNSLVLDFF 654
Query: 232 FGSGTSGAVAKKLRRSF 248
GSGT+ A A KL+R +
Sbjct: 655 VGSGTTIATAHKLKRKW 671
>gi|205372117|ref|ZP_03224933.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
coahuilensis m4-4]
Length = 381
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 9/198 (4%)
Query: 20 KDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQ-----LNGQLYRPDHSLVDAVTDSW 72
++ I++G ++ + L + VDLI DPPYN + P+ + +
Sbjct: 70 RNIILEGENLQGMVTLYKYREQVDLILTDPPYNTGHYFRYNDKWDSDPNDPDLGTLVSEE 129
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVW 131
D S + L ++LKP G L + + +F +G M+ I+
Sbjct: 130 D-GSKHTKWMKAMMPRLHMMWKMLKPTGVLAICIDDNELFHLGMMMNEVFGEENRIGIIN 188
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ + P + E ++ + ++ D +
Sbjct: 189 WQKSYAPKSDSKHMSTGTEYVLVYAKDKSLAKTGLLPRESMTNSKYKNPDKDPEGLWRND 248
Query: 192 SERLRNKDGEKLHPTQKP 209
+ + + ++ Q P
Sbjct: 249 NATVATVVEKDIYAIQSP 266
>gi|297374642|emb|CBL42929.1| DNA methylase N-4/N-6 [Candidatus Magnetobacterium bavaricum]
Length = 221
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 65/190 (34%), Gaps = 39/190 (20%)
Query: 20 KDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDSW 72
++K+ G+++ VL + SVDLI+ DPP+N + + + + V A D+W
Sbjct: 5 RNKLYYGDNLYVLERYIKDDSVDLIYLDPPFNSNADYSVLFKEPTGEVSEAQVTAFEDTW 64
Query: 73 D-------------------------------KFSSFEAYDAFTRAWLLACRRVLKPNGT 101
K + AY L+ +RVLK G+
Sbjct: 65 HWTQETEVAFQRIVDRGTVDVVETMAAFRRFIKRNDMMAYLVMMCVRLIELKRVLKDTGS 124
Query: 102 LWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ + ++ + + + F+ +++++ S
Sbjct: 125 IYLHCDPTASHYLKVIMDAIFGIKNFRNEIVWHYTGWNKRLSKWFEKRSDSILFYCKSDN 184
Query: 161 AKGYTFNYDA 170
+ +++
Sbjct: 185 QQFNSYSTQW 194
>gi|317010061|gb|ADU80641.1| putative type III restriction enzyme M protein [Helicobacter pylori
India7]
Length = 629
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 18/142 (12%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 166 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
++ F + L A R L +G ++V + + ++ NP
Sbjct: 212 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFGRENFVGCCPICVNP 271
Query: 137 MPNFRGRRFQNAHETLIWASPS 158
+ F N H+ I + +
Sbjct: 272 RGRQSDKFFPNTHDYFIAYAKN 293
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 73/205 (35%), Gaps = 7/205 (3%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS----PKAKG 163
Y IF D++ GR + + + +
Sbjct: 342 YFPIFYNKQTHAISLEKTYGDLIEIIPKLNDGIDGRWRWSKDKIIKDMDKLLVRLVNNEH 401
Query: 164 YTFNYDALKAANEDVQMRS---DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
Y ++ + +S D G ++N K+ K E L+ RIL S
Sbjct: 402 YDIFEKDYLTQDKRRKQKSLWLDKDFNNELGGLHIKNLFNNKIFAYPKSEHLIQRILEVS 461
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
T D++LD F GSGT+ AVA K++R +IGIE I +R+ V ++
Sbjct: 462 TNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKC 521
Query: 281 GKRTEPRVAFNLLVERGLIQPGQIL 305
G + + L E L QIL
Sbjct: 522 GFKGGGSFVYAELKEVNLEIKRQIL 546
>gi|317501178|ref|ZP_07959383.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
gi|316897354|gb|EFV19420.1| DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
Length = 222
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 74/241 (30%), Gaps = 31/241 (12%)
Query: 29 ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+ + + P K D+ DPPY N + Y + ++ + +D +
Sbjct: 1 MDGMREFPDKFFDIAVVDPPYFAGPNKRRYYGRSESTTLIKRR--EYDIIDTWDVPGMEY 58
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
RV S H I +SN + + +
Sbjct: 59 FDELIRV-----------SRHQIVWGCNYFDYHFGSGRIVWDKCRSNMTFSDAEIAYCSL 107
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
H+T+ + D + + + ++HPTQK
Sbjct: 108 HDTVKTFRYMWDGMMQGKSVDEGWIQKGN------------------KKTNEHRIHPTQK 149
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P L I KPG +LD GS +S + ++G E+ + A KR+ V
Sbjct: 150 PIDLYRWIAREYIKPGWNVLDTHTGSASSLIAYHEAGIRYVGFEINEKMYQKARKRLKEV 209
Query: 269 Q 269
+
Sbjct: 210 E 210
>gi|147678479|ref|YP_001212694.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
gi|146274576|dbj|BAF60325.1| DNA modification methylase [Pelotomaculum thermopropionicum SI]
Length = 368
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL-----YRPDHSLVDAVTD 70
+ + + I +G+S VL+ LP SVD + DPPY L + + D ++
Sbjct: 1 MQRYLNTITQGDSYEVLKDLPENSVDAVVTDPPYGLSKEPDIVEVLTHWLDDQEYKHLS- 59
Query: 71 SWDKFSSFEAYDAF--TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
K + +D+F + + RVLKP G + + L+ F I +
Sbjct: 60 ---KGFMGKDWDSFVPSPSLWREVYRVLKPGGHVLCFAGTRTQDIMTIALRLAGFEIRDV 116
Query: 129 IVWRKSNPMPNFR 141
I W P
Sbjct: 117 IEWLYLTGFPKNM 129
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
HPT KP L++ + T PG ++LDPF GSG++ A + +FI IE + DY++
Sbjct: 300 NRNTHPTVKPTGLMAWLCRLITPPGGLVLDPFAGSGSTAVAAIREGFNFIAIERESDYVE 359
Query: 260 IATKR 264
IA R
Sbjct: 360 IAKSR 364
>gi|260774789|ref|ZP_05883691.1| site-specific DNA-methyltransferase (adenine-specific) [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609214|gb|EEX35369.1| site-specific DNA-methyltransferase (adenine-specific) [Vibrio
coralliilyticus ATCC BAA-450]
Length = 592
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 11/151 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL-------VDAVTD 70
+ I++G+++ L+ L A V I+ DPPYN G +Y + + + V
Sbjct: 39 NLIVQGDNLHALKALLPRYAGQVKCIYIDPPYNTGNEGWVYNDNVNSPEIRKWLGEVVGK 98
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ + + L+ ++ L +G L V + +L +
Sbjct: 99 EGETLDRHDRWLCMMYPRLVLLKQFLADDGVLLVSLDDNESANAKLILNEIFGEGNFIAQ 158
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
N + F HE + + S K
Sbjct: 159 LVWEKGRKND-AKFFSVGHEYIFVYAKSKKY 188
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 43/220 (19%), Positives = 68/220 (30%), Gaps = 28/220 (12%)
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW- 131
D F E L + + + + ++R M D++
Sbjct: 219 DDFGLIEENLKLFYKGLD--KNHPSKKHSRYNKADANGVWRDDNMSWPGGNGPKYDVIHP 276
Query: 132 --RKSNPMPNFRGRRFQNAHETLIWA-SPSPKAKGYTFNYDALKAANEDVQ--------- 179
+K +P R + L+ A + +T D +
Sbjct: 277 VTKKPCAVPEGGWRYSKKEKMDLMIAEGKVVFREDHTQPPIRKTYLVRDKRLQENNDEDI 336
Query: 180 ----MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFG 233
M S + L N GEK P K + ++S ++ T +ILD F G
Sbjct: 337 GREVMGSYFYRSGLQAVNELMNIFGEKPFPNPKDKDVISSLIKYVTGYDKNCLILDSFAG 396
Query: 234 SGTSGAVAKK------LRRSFIGIEMKQD-YIDIATKRIA 266
SGT+ K R+FI IEM + KRI
Sbjct: 397 SGTTAHAVLKLNHQDNGNRNFITIEMDDSVANHVTIKRIK 436
>gi|260587176|ref|ZP_05853089.1| putative prophage LambdaMc01, DNA methyltransferase [Blautia
hansenii DSM 20583]
gi|260542371|gb|EEX22940.1| putative prophage LambdaMc01, DNA methyltransferase [Blautia
hansenii DSM 20583]
Length = 445
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 47/259 (18%)
Query: 21 DKIIKGNSISVLEK--LPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G+S + ++ L + + DPPY + R S+ D+ K
Sbjct: 190 HRLVCGDSTNEADRALLLDGAEPQI--LLMDPPYCSGGFQESGRSTGSIGTKRYDANGKE 247
Query: 76 S---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
S Y R+ L ++ + + +++ F +
Sbjct: 248 IKVTIANDSLSTRGYQQLMRSILKQF-----TGTVVYCFTDWRMWLYLYDVMEESGFGVK 302
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
N IVW K P G ++ HE +++A + A
Sbjct: 303 NMIVWNKKTPGM---GMGWRTQHELIMFAHRTKPAW----------------------DN 337
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
G+ + G +LHPTQKP +L ++L + T+ + ++D F GSGT+ A+ + +
Sbjct: 338 HKGYGNVIEATRSGNELHPTQKPVEILEKLLDN-TQWAEGVMDAFGGSGTTLIAAESIGQ 396
Query: 247 SFIGIEMKQDYIDIATKRI 265
+E+ ++D KR
Sbjct: 397 KSYLMELSPQFVDTIVKRY 415
>gi|57238177|ref|YP_178742.1| type III restriction/modification enzyme, methylase subunit
[Campylobacter jejuni RM1221]
gi|205355478|ref|ZP_03222249.1| Type III RM methylase [Campylobacter jejuni subsp. jejuni CG8421]
gi|57166981|gb|AAW35760.1| type III restriction/modification enzyme, methylase subunit
[Campylobacter jejuni RM1221]
gi|205346712|gb|EDZ33344.1| Type III RM methylase [Campylobacter jejuni subsp. jejuni CG8421]
gi|315058042|gb|ADT72371.1| Type III restriction-modification system methylation subunit
[Campylobacter jejuni subsp. jejuni S3]
Length = 675
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 9 INENQNSIFEWKDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
I Q + + +IKGN++ VL +KL A + LI+ DPPYN +
Sbjct: 154 IKNLQEYLKNNPNLLIKGNNLLVLHSLKKLYANKIKLIYIDPPYNTGNDSF--------- 204
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
D + + F + L + L+ +G ++V + + ++
Sbjct: 205 -GYNDKFK----HSTWLTFMKNRLEIAKEFLRDDGVIFVQCDDNEQAYLKVLM 252
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+KPEALL RI+ ST DI++D F GSGT+ AVA K++R +IGIE I +R
Sbjct: 487 NAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIGIEQMDYIETITKER 546
Query: 265 IAS 267
+
Sbjct: 547 LKK 549
>gi|284097712|ref|ZP_06385726.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
WGA-A3]
gi|283830777|gb|EFC34873.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
WGA-A3]
Length = 124
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 43/84 (51%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D + + L + G + H P+AL + TK D +LDPF GSGT+ VA+
Sbjct: 28 DRKMAYPTNVLHLATETGNRKHSAVFPKALPEWFIKLFTKENDWVLDPFAGSGTTCQVAQ 87
Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
L R+ +GIE+ DY +A + I
Sbjct: 88 TLMRNSVGIEILPDYYKLAQENIK 111
>gi|168704008|ref|ZP_02736285.1| helicase domain protein [Gemmata obscuriglobus UQM 2246]
Length = 752
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/287 (19%), Positives = 91/287 (31%), Gaps = 47/287 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+ + L + VD PP+ D + F A+
Sbjct: 460 IHLGDCVETLRGFDPECVDYSLFSPPFASLYTYSNSPRDMGNCGTYAE-------FAAHF 512
Query: 83 AFTRAWLLACRRVLKPNGTLWVIG----------SYHNIFRIGTMLQNL----NFWILND 128
F A RVLKP + Y I L F ++
Sbjct: 513 GFLVA---ELYRVLKPGRLVSFHCMNLPTTKEHHGYIGIQDFRGDLIRQFQAAGFIYHSE 569
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPK---------------------AKGYTFN 167
+ K R + H+ L S + TF
Sbjct: 570 VCVWKDPVTAMQRTKALGLLHKQLKKDSCMSRQGIPDFVVTVRKPGVNPAPVSHTNDTFP 629
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
D + V M D + R ++ ++ H ++ R L ++PGD++
Sbjct: 630 VDRWQRYASPVWM--DIDQSDTLNNYRDARQEQDERHICPLQLGVIERCLELWSRPGDLV 687
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
L PF G G+ G VA K++R F+G E+K Y +IAT + + +
Sbjct: 688 LSPFAGIGSEGYVALKMKRRFVGCELKPSYFEIATANLRRAEAESSQ 734
>gi|322513973|ref|ZP_08067048.1| modification methylase EcaI [Actinobacillus ureae ATCC 25976]
gi|322120199|gb|EFX92157.1| modification methylase EcaI [Actinobacillus ureae ATCC 25976]
Length = 375
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAK----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
++ ++K+ G+++ ++ L ++LI+ DPPY N + + A +
Sbjct: 4 DNDVNNQNKLFFGDNLDSMQYLLNNGYSGKINLIYIDPPYATSHNFK----NKDQQHAYS 59
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILND 128
D+ + + F R L+ R +L NG++++ + F + ++
Sbjct: 60 DTLEG----AEFVEFLRERLILMRELLASNGSIYLHLDSNMAFTMKLIMDEIFGEKNCRA 115
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ RK N+ F N + +++ + S K +
Sbjct: 116 FITRKKCSTKNYTRNTFGNISDYIMFYTKSDKYTWHRP 153
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
WR P + + + L A + ++ + ++ WL S
Sbjct: 195 WRGKLPPKGKHWQYTPDKLDELDSAGEIYWSSTGNPRRMVFCNPDQGIPIQDIWLNYRDS 254
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
++ + +PT+K +L I+ SS+ P D+++D F GSGT+ A +L R++IG
Sbjct: 255 INQAQKT----TGYPTEKNFDMLKLIIASSSNPNDLVMDCFSGSGTTLGAAFELNRNWIG 310
Query: 251 IEMKQDYIDIATKRIAS 267
++ + I KR +
Sbjct: 311 MDNSLESIKAIFKRFRN 327
>gi|255103333|ref|ZP_05332310.1| putative site-specific DNA-methyltransferase [Clostridium difficile
QCD-63q42]
gi|255652441|ref|ZP_05399343.1| putative site-specific DNA-methyltransferase [Clostridium difficile
QCD-37x79]
Length = 269
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 46/287 (16%)
Query: 23 IIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + +++ L K VD I AD P ++WDK +F A
Sbjct: 9 LYNDECLKIMDTLIEKNVKVDAIIADIP----------------QGITKNNWDKPLAFNA 52
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
L L+ N +I + F + N + + +
Sbjct: 53 ----MWDRL----YKLRRNKNTPIILFTNQPFTSKLICSNDKHFKIMKYWEKDRPSGFLN 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNY----DALKAANEDVQMRSDWLIPICSGSERLR 196
R E + P ++ N + + +++ + ER
Sbjct: 105 AKRMPLKNVEEIAIFYEKPPVYNPQMIVGKPSHSIGKVNGESKCKNNNNYGNFARVEREG 164
Query: 197 NKDGEK-----------LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
N K +HPT+KP LL ++++ + GD+ILD G ++G A +
Sbjct: 165 NLKYPKQILKYSRPHPPIHPTEKPVPLLKDLIMTYSNEGDVILDFTAGVISTGVAALETN 224
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
R FIGIE+ ++ + KR+ + L + K E +
Sbjct: 225 RRFIGIELNEESFNKGVKRMRNT-----ESLIMKGCKHKENKSFRKS 266
>gi|261416218|ref|YP_003249901.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261372674|gb|ACX75419.1| DNA methylase N-4/N-6 domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326303|gb|ADL25504.1| putative type III restriction-modification system, Mod subunit
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 548
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 21/167 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ +K+ A + + IF+ + +I G+++ L+ L + V ++ DPPYN +
Sbjct: 27 VPEKSYCAKTKREGDIFD--NMLIHGDNLLALKALESKFTGQVKCVYIDPPYNTGSAFK- 83
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+D + RA L + ++LK G L++ + +
Sbjct: 84 -------------HYDDCLEHSTWLNLMRARLESIFKLLKKEGVLFISIDDDECHYLKIL 130
Query: 118 LQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ P+F E ++ + K+
Sbjct: 131 CDEVFGRENFCGSFVWERKKKPSFLSNMGV-VTEYILAYAKEKKSSP 176
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
KPE L+S ++ + T+ GD++LD F GSGT+ AVA K+ R +IG+E+
Sbjct: 320 AFDNPKPEMLISTLIDAVTEKGDLVLDSFLGSGTTAAVAHKMGRRWIGVELGDHCYSHCI 379
Query: 263 KRIASVQPLGN 273
R+ V +
Sbjct: 380 SRLQKVIDGND 390
>gi|17225519|gb|AAL37449.1|AF328915_3 type II DNA modification enzyme [Helicobacter pylori]
Length = 343
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 102/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V + ML
Sbjct: 63 SDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFRNEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICSG--- 191
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 192 ---SERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 243 EQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKNSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSDLAIKACKNKLETITKD 330
>gi|257439329|ref|ZP_05615084.1| putative prophage LambdaMc01, DNA methyltransferase
[Faecalibacterium prausnitzii A2-165]
gi|257198204|gb|EEU96488.1| putative prophage LambdaMc01, DNA methyltransferase
[Faecalibacterium prausnitzii A2-165]
Length = 445
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 47/259 (18%)
Query: 21 DKIIKGNSISVLEK--LPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G+S + ++ L + + DPPY + R S+ D+ K
Sbjct: 190 HRLVCGDSTNEADRALLLDGAEPQI--LLMDPPYCSGGFQESGRSTGSIGTKRYDANGKE 247
Query: 76 S---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
S Y R+ L ++ + + +++ F +
Sbjct: 248 IKVTIANDTLSTRGYQQLMRSILKQF-----TGTVVYCFTDWRMWLYLYDVMEESGFGVK 302
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
N IVW K P G ++ HE +++A + A
Sbjct: 303 NMIVWNKKTPGM---GMGWRTQHELIMFAHRTKPAW----------------------DN 337
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
G+ + G +LHPTQKP +L ++L + T+ + ++D F GSGT+ A+ + +
Sbjct: 338 HKGYGNVIEATRSGNELHPTQKPVEILEKLLDN-TQWAEGVMDAFGGSGTTLIAAESIGQ 396
Query: 247 SFIGIEMKQDYIDIATKRI 265
+E+ ++D KR
Sbjct: 397 KSYLMELSPQFVDTIVKRY 415
>gi|38234465|ref|NP_940232.1| putative DNA methylase [Corynebacterium diphtheriae NCTC 13129]
gi|38200728|emb|CAE50429.1| Putative DNA methylase [Corynebacterium diphtheriae]
Length = 613
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHP-------TQKPEALLSRILVSSTKPGDIILD 229
+ R+ W ++ + K+ P T KPE LL RI+ + PGDI+LD
Sbjct: 309 GLVPRTWWNADEAGHNQEAKRDHLNKMFPEVENPFSTPKPERLLERIIHIGSNPGDIVLD 368
Query: 230 PFFGSGTSGAVAKKLRRSFIGIE-MKQDYIDIATKRIASVQPLGN 273
F GSGT+ AVA+K+ R ++ E ++ + R+ V +
Sbjct: 369 VFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVVNDED 413
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 32/204 (15%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V L++ DPP+N Y +
Sbjct: 73 NLLILGESGDVLEALTRVPELAEKYVGKVKLVYIDPPFNTAQTFASYEDN---------- 122
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
+ R L+ +++L +G++WV + R+ ++ +
Sbjct: 123 ----LEHSIWLTMMRDRLIHMKKLLTNDGSIWVHLDDVEVHRMRVLMDEVFGADRFIATV 178
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN------YDALKAANEDVQMRSDWL 185
AH+ ++ +PS + N + N D R WL
Sbjct: 179 AWEKDKGRRNDTDISGAHDLILIYAPSGRQWKNVRNLLPRLASQDARYQNPDNDPRGPWL 238
Query: 186 IPICSGSERLRNKDGEKLHPTQKP 209
+ ++ + P P
Sbjct: 239 QG---DNGTAKSGTEKNRFPVTLP 259
>gi|325475270|gb|EGC78455.1| adenine-specific DNA modification methyltransferase [Treponema
denticola F0402]
Length = 428
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 22/217 (10%)
Query: 1 MSQKNSLAINENQ---NSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLN 54
+ +N + EN+ + + K+ I+ +++ L L + +I+ DPPYN
Sbjct: 20 LKNQNKFSFTENKVKSFNSEDAKNLYIESDNLYALLFLQKDYKDKIKIIYIDPPYNTGKK 79
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
D F S + + L + +L +G +++ +
Sbjct: 80 FTYA--------------DNFQSKTEWMNYLYVRLSLAKNLLTDDGLIFISIDDKTCPYL 125
Query: 115 GTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-KAKGYTFNYDALK 172
+L + ++ R + +HE ++ + K K T
Sbjct: 126 RIILDEIFGTKNFISTLVWNNSTGGGLRKKHINTSHEYIVLYAKDKTKVKPMTAPMPEKA 185
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ + + + + +P + P
Sbjct: 186 KKMYKYKDADGRFFRYQQFAWKNKTDAKRQKYPIKTP 222
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 11/103 (10%)
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRI 216
+ +T E+ +S + + G K+ KP +LL +
Sbjct: 268 STKWTIYVKTYLEKKEETVPKSLLPAEYVKTNIQSVYEQKVLFGAKIFDYAKPVSLLKYL 327
Query: 217 LVSSTKPGD-IILDPFFGSGTSGAVAK------KLRRSFIGIE 252
D ++LD F GS T+ R FI ++
Sbjct: 328 FKLVPNSDDAVVLDFFSGSATTAHAVMELNAELNENRKFILVQ 370
>gi|185179129|ref|ZP_02964848.1| type III restriction-modification system:Methylase [Ureaplasma
urealyticum serovar 5 str. ATCC 27817]
gi|225551466|ref|ZP_03772412.1| type III restriction-modification system:Methylase [Ureaplasma
urealyticum serovar 8 str. ATCC 27618]
gi|184208967|gb|EDU06010.1| type III restriction-modification system:Methylase [Ureaplasma
urealyticum serovar 5 str. ATCC 27817]
gi|225379281|gb|EEH01646.1| type III restriction-modification system:Methylase [Ureaplasma
urealyticum serovar 8 str. ATCC 27618]
Length = 528
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 73/237 (30%), Gaps = 32/237 (13%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLP-----------AKSVDLIFADPPYNLQLNGQL 57
+N+ N + +I G + VL+ L D+I+ DPPYN + +
Sbjct: 80 MNDAHNLFKNDTNSLIIGENYDVLKNLLVLERERETSGRDAYYDVIYIDPPYNTEASKTD 139
Query: 58 YRPDHSLVDAVTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
D + DKF S + L + +LK +G ++V + +
Sbjct: 140 GNNFSEKDDVAASKFVYRDKF-SRNGWLNMMNERLKLAKNLLKNDGVIFVSIDDNEQAYL 198
Query: 115 GTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS------PKAKGYTFN 167
++ + N P + H+ ++ + T
Sbjct: 199 KVLMDEIFGEENFTCNFVWEKNYAPKNNNKFVSVNHDYILCYCKNKILKNKFNRNQRTEK 258
Query: 168 YDALKAANEDVQMR----------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
+ L +D ++ I G + L K+ L+ +K L+
Sbjct: 259 NNRLYFYKDDRGFYKSSDLTKKGSNNIYDIIWDGKKYLCPKNSSWLYNEEKMYELIK 315
Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 10/133 (7%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LR 245
++L + T KP L+ ++ ++ ILD F GSGT+G
Sbjct: 359 KKQLDSILDNHNFNTPKPIELIKYLINIASTNNARILDFFAGSGTTGHAVLALNKEDGGN 418
Query: 246 RSFIGIEMKQDYI--DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
R+F + ++ I ++ +R+ + E + +P + + +
Sbjct: 419 RTFTIVTNNENEIGTNVCYERLYRINNGFGTKNETDFDWINKNKPYLNNLNVYDLKYFDT 478
Query: 302 GQILTNAQGNISA 314
I + A
Sbjct: 479 NPIKIDNNEIKEA 491
>gi|126668728|ref|ZP_01739678.1| putative site-specific DNA-methyltransferase [Marinobacter sp.
ELB17]
gi|126626828|gb|EAZ97475.1| putative site-specific DNA-methyltransferase [Marinobacter sp.
ELB17]
Length = 406
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/295 (18%), Positives = 92/295 (31%), Gaps = 72/295 (24%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
VL L + L+ PPY LQ P+ Y F L
Sbjct: 117 DVLNAL-NAPITLVLTSPPYPLQTARAYGNPN----------------LNQYIDFVVESL 159
Query: 90 LACRRVLKPNGTLWVIGSY---------HNIFR---IGTMLQNLNFWILNDIVWRKSNPM 137
+ L+P G++ + S +++R + + L W +++++W
Sbjct: 160 RPIAKHLEPGGSICLNLSNDIFEPGIPARSLYRERLVIALADELKLWKMDELIWHNPCKP 219
Query: 138 PNFRGR----------------RFQNA------------------HETLIWA-----SPS 158
P F N H LI A + +
Sbjct: 220 PGPIAWASKKRNQLNVAWEPVYWFTNNPALVKSDNRRVLQPHSERHLKLIEAGGTASART 279
Query: 159 PKAKGYTFNYDALKAANEDVQMRSD-WLIPICSGSERLRN---KDGEKLHPTQKPEALLS 214
Y A R+ C R + + G H P +L +
Sbjct: 280 ASDNAYRTRKGAYGKPTAGKIPRNILTFPHNCPAQSRYKKAARELGIAPHGAPFPLSLAT 339
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++ T+PGD+++DPF GS T+G A++ R ++ IE +Y+ R
Sbjct: 340 FLIRFLTEPGDLVIDPFAGSLTTGDAAQREGRRWLMIECMWEYLRAGATRFQEHN 394
>gi|158320351|ref|YP_001512858.1| site-specific DNA-methyltransferase (adenine-specific)
[Alkaliphilus oremlandii OhILAs]
gi|158140550|gb|ABW18862.1| Site-specific DNA-methyltransferase (adenine-specific)
[Alkaliphilus oremlandii OhILAs]
Length = 656
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 24/221 (10%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP------ 60
NE + + ++ I G+++ L+ L V I+ DPPYN +G +Y
Sbjct: 85 NEKEEN-KNSENGYISGDNLDALKHLLKSYSGMVKCIYLDPPYNTGSDGFVYNDKFNFTV 143
Query: 61 ---------DHSLVDAVTDSWDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
D + D ++ S S A+ F LL + +LK +G +++ +
Sbjct: 144 EQLMERLSLDEGQAQRIIDMTNRGSASHSAWLTFMYPRLLLAKDLLKEDGVIFISIDENE 203
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + N N + HE +I + +N +
Sbjct: 204 HSNLRLLCDEVFGEENYSGEIIWKNSSKNDQA-FISIQHEYIISFVKNKDLNSGEWN-EK 261
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ E + ++ E + + Q PE+
Sbjct: 262 KEGLEEIFKAFDEFKKKHGDNWEEIHKEALN--WFKQFPES 300
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 42/297 (14%), Positives = 77/297 (25%), Gaps = 22/297 (7%)
Query: 50 NLQLNGQLYRPDHSLVDAVTD-SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
N + + A + ++E W +
Sbjct: 254 NSGEWNEKKEGLEEIFKAFDEFKKKHGDNWEEIHKEALNWFKQFPESNPIYASKHYTWMD 313
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRK------SNPMPNFRGRRFQNAHETLIWASPSPKAK 162
N + NF V P +R K +
Sbjct: 314 ENGVYFPDNISGPNFGQYRYDVIHPVTGKVCKEPASGWRFPEETMKQRIKEKLVHFGKDE 373
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS-ST 221
N + + S S++L G K K LL+ I +
Sbjct: 374 TTIPNNKTYLKNTQYQSLTSIKYKDGRVASKQLNELMGGKHFTNPKDVDLLNTIFKAVGV 433
Query: 222 KPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYID-----IATKRIASVQP 270
II+D F GS T+ + R +I +++ ++ + A R +
Sbjct: 434 DKDSIIVDFFSGSATTAHAVMQLNAEDGGNRKYIMVQLPEEVKEKSEAYKAGYRTINQIG 493
Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI--SATVCADGTLISG 325
+ I+ K LI+P Q + + +A + AD T++
Sbjct: 494 IERIKRAAKKIKEETKVDIDYGFKHYELIEPNQNTLDKLESFDPNAFI-ADKTILDE 549
>gi|256819717|ref|YP_003140996.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
ochracea DSM 7271]
gi|256581300|gb|ACU92435.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
7271]
Length = 753
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/295 (17%), Positives = 92/295 (31%), Gaps = 51/295 (17%)
Query: 23 IIKGN-SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK--FSSFE 79
++KG+ I + +++P SVDLI PP++ Y D ++ D + + F +
Sbjct: 449 LMKGDSCIEI-KRIPDNSVDLIIFSPPFSSLFTYSNYIHDMGNNESHEDFFKQYTFLLHD 507
Query: 80 AYDAFTRAWLLAC--------RRVLKPNGTLWVIGSYH--------------NIF----- 112
Y L+ C + G G +H NI+
Sbjct: 508 LYRILKPGRLMVCHTKDLAVYKNSSGYTGLYDFTGDHHRAVEAVGFKYHSKVNIWTDPVL 567
Query: 113 --------------------RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
G L + N + +
Sbjct: 568 EMQRTKTQRLLYKQLRKDSSYTGVGLPEYCTIFRKWEGNEEDWTPINNKNKENFPLDVWQ 627
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
WASP+ + ++ + V D ++ G++ H ++
Sbjct: 628 HWASPTWNVEKGDIDHLHEVMEDYKVNTWFDIKRTDVLNGKKEATDLGDEKHIAPLQLSV 687
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ R + + G+ + PF G G+ A L R IGIE+K Y + A K I
Sbjct: 688 IKRCVQMWSNKGETVFTPFLGIGSEIYEAVTLERYGIGIELKDKYFETAVKNINM 742
>gi|309806785|ref|ZP_07700775.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
03V1-b]
gi|308166822|gb|EFO69011.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
03V1-b]
Length = 387
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS 63
+ E + + +++G+++ L+ L +D+I+ DPPYN +Y D S
Sbjct: 11 VKEREIKAKDENSYNFLLEGDNLHSLKLLEKTHAGKIDVIYIDPPYNTGNKDFIY--DDS 68
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
VD S + +F L + +L G +++ H ++ + ++
Sbjct: 69 FVDKTD-----GYSHSKWLSFMSERLEIAKLLLSEEGVIFISIDDHEQAQLKLLCDSVFG 123
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
++ HE L+ + +
Sbjct: 124 ADNFIAESIDASNSSKNNSNYIAVNHEYLLCYAKN 158
>gi|308183475|ref|YP_003927602.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
PeCan4]
gi|308065660|gb|ADO07552.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
PeCan4]
Length = 136
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+KI + + L+KL KSVDL DPPYNL++ SWD F +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKND 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
E + F+ W+ LK G+ ++ + N L++ LN I W K +
Sbjct: 46 EEFLTFSYTWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLRHKKVHFLNFITWVKKDGFA 105
Query: 139 NFRGRRFQNAHETLIWASPSPKAK 162
N + R + +A E++++ S K
Sbjct: 106 NAKKR-YNHAQESILFYSMHKKNY 128
>gi|163741620|ref|ZP_02149011.1| DNA methyltransferase [Phaeobacter gallaeciensis 2.10]
gi|161385354|gb|EDQ09732.1| DNA methyltransferase [Phaeobacter gallaeciensis 2.10]
Length = 400
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 24/157 (15%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I+ +++ L +P+ +D PPY Q + + + Y
Sbjct: 74 LIQSDALDALRGMPSNIIDCAITSPPYWQQRAYE------------AGGIGEEQTVGEYL 121
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN---------LNFWILNDIVWRK 133
RA R+LKP G+LW+ R + + I ND++W K
Sbjct: 122 TDLRAVFQQVHRLLKPTGSLWINIDDTYHQRSMQGIPWRLVLGLVEDCGWLIRNDVIWSK 181
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ N RF + HE L ++ Y ++DA
Sbjct: 182 TGGSLNRSSNRFSHRHEHLFHLVK---SEDYYHDHDA 215
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
++ AS + Y YD + DV + R + + G H
Sbjct: 289 HSDSQSISARASKLDRQGYYLLRYDPDGSLMGDVWNIAPD---------RSKGRSG---H 336
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
P+ L + ++ P ++LDPF G+GTS VA+KL R IGI++ +YI++A +R
Sbjct: 337 YAAFPQDLCDVPIRATCPPSGVVLDPFVGTGTSLVVARKLGRHGIGIDLSDEYINLARQR 396
Query: 265 IA 266
+
Sbjct: 397 LQ 398
>gi|283798251|ref|ZP_06347404.1| putative prophage LambdaMc01, DNA methyltransferase [Clostridium
sp. M62/1]
gi|291074032|gb|EFE11396.1| putative prophage LambdaMc01, DNA methyltransferase [Clostridium
sp. M62/1]
Length = 445
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 47/259 (18%)
Query: 21 DKIIKGNSISVLEK--LPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G+S + ++ L + + DPPY + R S+ D+ K
Sbjct: 190 HRLVCGDSTNEADRALLLDGAEPQI--LLMDPPYCSGGFQESGRSTGSIGTKRYDANGKE 247
Query: 76 S---------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
S Y R+ L ++ + + +++ F +
Sbjct: 248 IKVTIANDTLSTRGYQQLMRSILKQF-----TGTVVYCFTDWRMWLYLYDVMEESGFGVK 302
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
N IVW K P G ++ HE +++A + A
Sbjct: 303 NMIVWNKKTPGM---GMGWRTQHELIMFAHRTKPAW----------------------DN 337
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
G+ + G +LHPTQKP +L ++L + T+ + ++D F GSGT+ A+ + +
Sbjct: 338 HKGYGNVIEATRSGNELHPTQKPVEILEKLLDN-TQWAEGVMDAFGGSGTTLIAAESIGQ 396
Query: 247 SFIGIEMKQDYIDIATKRI 265
+E+ ++D KR
Sbjct: 397 KSYLMELSPQFVDTIVKRY 415
>gi|19746425|ref|NP_607561.1| hypothetical protein spyM18_1488 [Streptococcus pyogenes MGAS8232]
gi|19748626|gb|AAL98060.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
Length = 251
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 14/229 (6%)
Query: 41 DLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
LI AD PYNL N P S + + K D + R+L
Sbjct: 24 QLIIADIPYNLGTNAYASDPRWYEKGSNKNGESKLAGKSFFDTDNDFKINNFFDFSARLL 83
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
K + M+ + ++ N + +
Sbjct: 84 KKE--------PKEKGKAPAMIVFHAWQQREMVIACGKKHGFNNAYPLYFTKKSSPQVLK 135
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ K G +A + + ++ I + + +++ +HPTQKP +L R+
Sbjct: 136 ANMKIVGAVE--EATVLYRDKLPKFNNGGAMILNHAPWVKDSSYPVIHPTQKPIPVLKRL 193
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ T P D+++DP GSG++ A ++ R+ G E+K+D+ A + +
Sbjct: 194 IEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAKEEM 242
>gi|325529766|gb|EGD06617.1| DNA methylase [Burkholderia sp. TJI49]
Length = 234
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R R +G HP + ++ ++ GD++LDPF GSGT+G A + R F GIE+
Sbjct: 141 RGRKANG---HPCSRALEHFDWLMRFWSEDGDMVLDPFMGSGTTGVAAIRAGRKFTGIEI 197
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
+ Y +IA +RI Q L T KR E
Sbjct: 198 EPKYFEIACRRIEDAQR--QESLFTSTPKRAEQ 228
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADP 47
+ G+ VLE LP D++ DP
Sbjct: 13 TLFLGDCREVLETLP--RADVVITDP 36
>gi|19745777|ref|NP_606913.1| hypothetical protein spyM18_0742 [Streptococcus pyogenes MGAS8232]
gi|94990072|ref|YP_598172.1| adenine-specific methyltransferase [Streptococcus phage 10270.1]
gi|94993984|ref|YP_602082.1| Adenine-specific methyltransferase [Streptococcus phage 10750.1]
gi|19747918|gb|AAL97412.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
gi|94543580|gb|ABF33628.1| Adenine-specific methyltransferase [Streptococcus phage 10270.1]
gi|94547492|gb|ABF37538.1| Adenine-specific methyltransferase [Streptococcus phage 10750.1]
Length = 262
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 28/236 (11%)
Query: 41 DLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
LI AD PYNL N P + S + + K D + C R+L
Sbjct: 35 QLIIADIPYNLGNNAYASDPRWYENGSNKNGESKLAGKSFFDTDNDFKINNFFDFCSRLL 94
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
+ + M+ + ++ N ++ +
Sbjct: 95 RKE--------PKEKGKAPAMIVFHAWQQRELVIACGKKHGFNNA---------YPLYFT 137
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL-------RNKDGEKLHPTQKP 209
+ N + A E + D L +G + ++ +HPTQKP
Sbjct: 138 KKSSPQVLKANMKIVGAVEEATVLYRDKLPKFNNGGAMILNHAPWEKDSSYPVIHPTQKP 197
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+L R++ T P D+++DP GSG++ A ++ R+ G E+K+D+ A + +
Sbjct: 198 IPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAKEEM 253
>gi|85860687|ref|YP_462889.1| type II restriction-modification system methylation subunit
[Syntrophus aciditrophicus SB]
gi|85723778|gb|ABC78721.1| type II restriction-modification system methylation subunit
[Syntrophus aciditrophicus SB]
Length = 361
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 17/215 (7%)
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+G ++ P R + +E +++ A
Sbjct: 36 FCETMGFDYMGAIIWQKVTTTNTTGGATIMGSFPYPRNGILKLDYEFILFFKKQGNAPKP 95
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
T +++ SG + ++ H PE L +R++ G
Sbjct: 96 TREQKERSVISKEDWNTYFSGHWYFSGVK-------QEGHIAMFPEELPARLIKMFAFVG 148
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL----------GNI 274
D +LDPF GSGT+ A+ L R+ IG E+ QD+I +++ Q +
Sbjct: 149 DTVLDPFLGSGTTSMAARNLERNSIGYEINQDFIPAIRQKLNVCQMDIHGAEYSFLEDSA 208
Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
+ P V + I P ++L ++
Sbjct: 209 TIDCEQEIEKLPYVFKDPHKLDKKIDPKKLLFGSK 243
>gi|76801822|ref|YP_326830.1| modification methylase [Natronomonas pharaonis DSM 2160]
gi|76557687|emb|CAI49270.1| modification methylase [Natronomonas pharaonis DSM 2160]
Length = 535
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/280 (16%), Positives = 88/280 (31%), Gaps = 71/280 (25%)
Query: 40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW--DKFSSFEAYDAFTRAWLLACRRVLK 97
VD+ PPY + + +E Y R V K
Sbjct: 44 VDVTITSPPYADVKDY-----------GYDEELQVGLGDDYEDYLEELRDIYKQTYDVTK 92
Query: 98 PNGTLWVIGSYHN----------------------------------IFRIGTMLQNLNF 123
P+G+LWV+ + G + + +
Sbjct: 93 PDGSLWVVVNTFKKGGRTVRLPTDIADVCENLEDKTTCDECGAPLDKDRETGILYCSDDC 152
Query: 124 WILND-----------IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG--------- 163
D ++W K +P +F+N E ++ S
Sbjct: 153 GFEYDATEGSWVLQDIVIWDKVRALPYSGTGKFRNVFEYILCFSKQNDFHFDLDKIRIAD 212
Query: 164 ---YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ + M D + + + ++ + D HP P L+ RI+ +
Sbjct: 213 PAEFKDWWIDYPERYHPRGMVPDNIWEMVTPTQGGWS-DMTIDHPAPFPRELVERIVHLT 271
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
T+P D++ DPF G+GT ++ + R +G E+ +++++
Sbjct: 272 TEPDDVVFDPFGGTGTVLGQSEAMGRWPLGFELSEEFVEA 311
>gi|53712450|ref|YP_098442.1| methyltransferase [Bacteroides fragilis YCH46]
gi|52215315|dbj|BAD47908.1| methyltransferase [Bacteroides fragilis YCH46]
Length = 584
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 15/179 (8%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+G+++ L L +D+I+ DPPYN N +Y D D D +
Sbjct: 74 HILIEGDNLETLTALAYTHEGKIDVIYIDPPYNTGNNDFVY------NDKFVDKEDSYR- 126
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDIVWRKSN 135
+ +F L +++L G +++ + ++ + + + V ++ +
Sbjct: 127 HSKWLSFMAKRLCIAKQLLSDKGVIFISIDDNEQAQLKLLCDEIFGENNFIASCVRKRRD 186
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKA--KGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
N HE + D N D R + C+
Sbjct: 187 SQANLS-HNISPIHEYVFIFCKRYDDLLNKIPAIIDDKDYRNPDNDPRGPYKTMPCTNK 244
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
G+ L++ E KP LL +L+ ++ ILD F GSGT+ +L
Sbjct: 317 QGTIELKDIFDELPFNNPKPIGLLKFLLILGSQTNSTILDFFAGSGTTLHATMQLNAEDG 376
Query: 246 --RSFIGIEMKQDYI--DIATKR 264
R I + ++ I ++ +R
Sbjct: 377 GHRKCILVTNNENNICEEVTYER 399
>gi|254191985|ref|ZP_04898485.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
gi|157987807|gb|EDO95572.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
Length = 390
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H PEAL+ +++ ++PGDI+ DPFFGSGT+G VA++L R F+G E+ DY +
Sbjct: 318 AHFATFPEALVEPCVLAGSRPGDIVFDPFFGSGTTGQVAQRLGRRFLGCELNPDYESLQF 377
Query: 263 KRIASV 268
R+
Sbjct: 378 DRLRQT 383
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
W D +G+ ++ + A V I PPY + Y PD
Sbjct: 1 MNWIDHSHRGDCRDLMRAMAADGLRVQTIVTSPPYW---GLRSYLPDGHPDKG--REIGS 55
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ + CR++L +GTLW+
Sbjct: 56 EPTLREFIDTLVGVFELCRQLLADDGTLWLNMGD 89
>gi|108562473|ref|YP_626789.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
gi|107836246|gb|ABF84115.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
Length = 343
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 102/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V + ML
Sbjct: 63 SDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFRNEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICSG--- 191
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRYWRTDVATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 192 ---SERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 243 EQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSYLAIQACKNKLETITKD 330
>gi|218673725|ref|ZP_03523394.1| DNA modification methylase M.SthI [Rhizobium etli GR56]
Length = 282
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 67/226 (29%), Gaps = 38/226 (16%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+++S + +LP +D I PPY Q + V + + +AY
Sbjct: 17 NDDALSGVRRLPDNFIDCIVTSPPYYWQRDY-----------GVDGHTGQEDTIDAYVEA 65
Query: 85 TRAWLLACRRVLKPNGTLWVI--------------GSYHNIFRIGTMLQNLNFWILNDIV 130
R+ RVLKP+GT +V+ G +R + V
Sbjct: 66 LRSVFSEALRVLKPSGTAFVVLGDTYYSGKGQPRGGDPKQTWRGVARQKYRAVDRPGFGV 125
Query: 131 WRKS-NPMPNFRGRRFQNAHETLIWASPSPK-------AKGYTFNYDALKAANEDVQMRS 182
+KS +P QN+ L K + R
Sbjct: 126 PKKSLLGVPWRVALALQNSGWVLRSCVIWRKTKPLAEPSVRDRPWTTTETIFILTKTGRY 185
Query: 183 DWLIPICSGSERLRNKDGEKL-----HPTQKPEALLSRILVSSTKP 223
+ +G E + + H PEAL+ R L +
Sbjct: 186 YFDRGGLAGQEDVWDIPARNALKRYRHAAPFPEALVERCLAAGMPE 231
>gi|291544089|emb|CBL17198.1| Adenine specific DNA methylase Mod [Ruminococcus sp. 18P13]
Length = 557
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 19/206 (9%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+S++ L I+ + +I+G++++ L+ L +DLI+ DPPYN + +
Sbjct: 74 LSEEKDLFIDNGGQ-----MNFLIEGDNLASLKLLEKTHKGKIDLIYIDPPYNTGASNWI 128
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y + D D F + + ++ L RR+L G L + + +
Sbjct: 129 YDNN------YVDGNDLFK-HSKWLSMMKSRLEIARRLLTTKGVLICAIDENESATLRLL 181
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQN----AHETLIWASPSPKAKGYTFNYDALKA 173
L + + +G+ F A+ + + + N
Sbjct: 182 LDEVFGVNYEYDCITIVHNPRGIQGKNFSYTNEFAYFVIPKGDKIIGERRLSNNEIYWSP 241
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKD 199
C +++
Sbjct: 242 LRNWGSESLRTDARNCFYPIIVKDDK 267
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 17/211 (8%)
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI---- 129
+ S+ E Y + R W R N +I I G + + N+I
Sbjct: 231 RLSNNEIYWSPLRNWGSESLRTDARNCFYPIIVKDDKIIGFGEVSPDDYHPKKNEILEDG 290
Query: 130 ---VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
V+ + + R + + E + K +G
Sbjct: 291 SIAVYPIDSKGIERKWRYARQSVEGICSYLAVKKTRGIFDIELGKTFGTYKTVWSDPKYD 350
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKK- 243
G + L + K + L S + P I+LD F GSGT+G K
Sbjct: 351 ANGYGKQLLNSLIPNCPFDFPKSLWNVYDCLYSVVAKMPNAIVLDFFAGSGTTGHAVMKL 410
Query: 244 -----LRRSFIGIEMKQDYI--DIATKRIAS 267
R FI ++ I D+ +RI
Sbjct: 411 NAEDGGNRRFILCTNNENNICRDVTYERIKR 441
>gi|134300090|ref|YP_001113586.1| type III restriction-modification system methylation subunit
[Desulfotomaculum reducens MI-1]
gi|134052790|gb|ABO50761.1| type III restriction-modification system methylation subunit
[Desulfotomaculum reducens MI-1]
Length = 227
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 18/124 (14%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----------- 55
E ++ I+G+++ L+ L V +I+ DPPYN +
Sbjct: 93 REESVDFDNTENLYIEGDNLDALKLLQETYLGKVKMIYIDPPYNTGNDFIYEDDFAQDAD 152
Query: 56 ----QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ D + V ++ + L + +L +G +++ + +
Sbjct: 153 EYLANSGQYDENGNRLVQNTESNGRFHTDWLNMIYPRLKLAKDLLTEDGAIFISIDDNEV 212
Query: 112 FRIG 115
+
Sbjct: 213 ENLN 216
>gi|217034286|ref|ZP_03439703.1| hypothetical protein HP9810_885g17 [Helicobacter pylori 98-10]
gi|216943258|gb|EEC22723.1| hypothetical protein HP9810_885g17 [Helicobacter pylori 98-10]
Length = 461
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 25/185 (13%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 74 KKNNKILKPLNESTSKHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDSFIYSDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH-ETLIWASPSPKAKGYTF 166
+ ++ +L + F N + + G +N +T I + +
Sbjct: 194 DNEAAQLK-LLCDEIFGERNFVTQFIWHSKNKPSGNTTENKTIDTRIEYIFCYQRYNFKA 252
Query: 167 NYDAL 171
N
Sbjct: 253 NKHEN 257
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 15/206 (7%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
YN + N + + F + Y L R + ++
Sbjct: 248 YNFKANKHENTKEELEEKGYILKDEYFETRGHYK------LTPLMRSCSASSFQYIESLD 301
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMP-------NFRGRRFQNAHETLIWASPSPKA 161
+ I + I + + + N + + +
Sbjct: 302 YEIQAPDGTWFKNHQNIKKEKSYCYTWSKKLFDFGNQNGFIEFQKTSDGFWCAYRKMYEL 361
Query: 162 KGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVS 219
+ + + G+ +RN +GEK+ KP L+SR++
Sbjct: 362 CAIDNKKLQIIYRKSGNAYSNLITNLYSDIGANEVRNIFNGEKIFSYPKPTKLISRLIEL 421
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLR 245
ST GDIILD F GSGT+ +
Sbjct: 422 STNEGDIILDFFAGSGTTAHAVLESN 447
>gi|119356767|ref|YP_911411.1| DNA methylase N-4/N-6 domain-containing protein [Chlorobium
phaeobacteroides DSM 266]
gi|119354116|gb|ABL64987.1| DNA methylase N-4/N-6 domain protein [Chlorobium phaeobacteroides
DSM 266]
Length = 884
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 31/201 (15%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLN-------GQLYRPDHS--- 63
W +++I+G+S V+ L V I+ DPPY ++ N D S
Sbjct: 137 WTNRLIQGDSHLVMASLLEREGMAGQVQTIYIDPPYGIKYNSNWQMKLNDRNVKDGSDEH 196
Query: 64 ------LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
++ A D+W+ +Y ++ R +L R +L +G+ +V S N+ + +
Sbjct: 197 LTGEPEMIKAFRDTWELG--IHSYLSYLRDRMLIARELLTESGSCFVQISDENVHLVRCL 254
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + F N + G N ++ +IW S + + D
Sbjct: 255 MDEV-FGSENFVSTISFIKTAGKMGGLLDNVNDFIIWYGKSKSSIKFRQ-------LYTD 306
Query: 178 VQMRSDWLIPICSGSERLRNK 198
++S E +
Sbjct: 307 RTLKSLNQGYNWIEEEEGKRY 327
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
EK + Q ++ R ++ +T PGD++LDP GSGT+ VA++ R +I I+ + ++I
Sbjct: 431 EKNYIVQTYSKVIHRCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRIALNI 490
Query: 261 ATKRI 265
A R
Sbjct: 491 AKTRF 495
>gi|71274520|ref|ZP_00650808.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71901747|ref|ZP_00683818.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|170730773|ref|YP_001776206.1| DNA methyltransferase [Xylella fastidiosa M12]
gi|71164252|gb|EAO13966.1| DNA methylase N-4/N-6 [Xylella fastidiosa Dixon]
gi|71728487|gb|EAO30647.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|167965566|gb|ACA12576.1| DNA methyltransferase [Xylella fastidiosa M12]
Length = 380
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 21/152 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G++++VL+ LP + +D PPY + + + + +
Sbjct: 50 LLLNGDALAVLKSLPNECIDFAMTSPPYWGKREYE------------NGGIGLEADYRDF 97
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQN-LNFWILNDIVWR 132
A L +RVLKP G+ W+ IG +N +R+ L + + + N +VW
Sbjct: 98 VKDLAAIFLELKRVLKPTGSFWLNIGDTYNGKGLVGIPWRVAFELTDVQGWTMRNSVVWN 157
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
K + R N HE L PK Y
Sbjct: 158 KLKGGMDNSKDRLANVHENLFHFVKQPKGYYY 189
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H P L R L+++ PG I+LDPF G+GT+ A L +GI++ + Y++++
Sbjct: 314 AHFAPYPIDLCRRPLLATCPPGGIVLDPFCGTGTTLLAAGNLGLKSVGIDISRHYLELSQ 373
Query: 263 KRIA 266
+R
Sbjct: 374 ERCD 377
>gi|156744102|ref|YP_001434231.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156235430|gb|ABU60213.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 370
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 24/158 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G++ +VLE+LP S+D++ PPY + Y
Sbjct: 41 LLLLGDAQTVLEQLPEASIDMVMTSPPYWGKREYD------------DGGIGMEDDHREY 88
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQ--------NLNFWILNDIVWR 132
+RVLKP G+ W+ +G ++ + + + + + N ++W
Sbjct: 89 IRHLTQICSLIKRVLKPEGSFWLNLGDTYHHMHLLGIPWRVALALTDHQGWILRNSVIWN 148
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
K + R N HE L PK Y +N DA
Sbjct: 149 KVKSGMDTAKNRLGNVHEYLFHFVKQPK---YYYNVDA 183
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+H P L ++S+ ++LDPF G+GT+ A+ L R IGI++ Q Y++I
Sbjct: 302 RDVHFAPYPVDLCRIPILSTCPEYGVVLDPFCGTGTTLLAARDLGRRSIGIDISQSYLEI 361
Query: 261 ATKRIAS 267
A +R +
Sbjct: 362 ALQRCQT 368
>gi|17225498|gb|AAL37434.1|AF328909_3 type II DNA modification enzyme [Helicobacter pylori]
Length = 343
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 102/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V + ML
Sbjct: 63 SDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFRNEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICSG--- 191
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 192 ---SERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 243 EQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSNLAIQACKNKLETITKD 330
>gi|261340392|ref|ZP_05968250.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
35316]
gi|288317484|gb|EFC56422.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
35316]
Length = 376
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
++ S L +G+ R HPT KP AL+S + T PG +LDP+ G
Sbjct: 276 MTGGRKVGSVGLNDPRAGAGRTNGAKNN--HPTVKPIALMSYLCRLITPPGGTVLDPWMG 333
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
SG++G A + +FIGI++ DY+ IA+ RIA
Sbjct: 334 SGSTGRAAIEEGFNFIGIDLNPDYVTIASARIAHSFKKTMEA 375
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 54/148 (36%), Gaps = 30/148 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G VL+ LP SVD I DPPY L + WD Y
Sbjct: 4 QLHVGRCEYVLKTLPDNSVDAIVTDPPYGLSF--------------MNHKWD-------Y 42
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP--- 138
D T C RVLKP G L G R+ ++ F I + I+W + P
Sbjct: 43 DVPTVEQWQECLRVLKPGGHLLAFGGSRTYHRLVVNAEDAGFEIRDQILWIYGSGFPKSH 102
Query: 139 ------NFRGRRFQNAHETLIWASPSPK 160
+ G + AHE ++ A K
Sbjct: 103 NLDGDFDGWGTALKPAHEPIVMARKPFK 130
>gi|17225550|gb|AAL37471.1|AF328924_4 type II DNA modification enzyme [Helicobacter pylori]
Length = 343
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 102/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V + ML
Sbjct: 63 SDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFINEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRMGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPICSG--- 191
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 192 ---SERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 243 EQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSNLAIQACKNKLETITKD 330
>gi|226355112|ref|YP_002784852.1| DNA methylase [Deinococcus deserti VCD115]
gi|226317102|gb|ACO45098.1| putative DNA methylase [Deinococcus deserti VCD115]
Length = 337
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI-CSGSERLRNKDGEKL 203
++N+ T + + + + + + ++ D G R +
Sbjct: 182 WENSKWTSLSYRSVDEFEYIYIFWKPGETVVDRRRLTGDEWKEWGSRGIWRFPSVRANDD 241
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
H + P L +R++ T PGD +LD F GSGT+ A L R+FIG+E+ +Y+ ++ +
Sbjct: 242 HEAKFPLELPTRVIKLLTNPGDTVLDCFMGSGTTAVAATNLNRNFIGLELLPEYVALSRR 301
Query: 264 RIASVQPLGNIELTVLTGKR 283
+A+ G+ L R
Sbjct: 302 NVAAAVQRGHGLLRQDKDLR 321
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I +G+S +L+++ A S+DL PPY + + + Y S++
Sbjct: 6 NQIHQGDSRKLLKEIDANSIDLSVWSPPYYVGKDYERYL----------------ESYQD 49
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ A + R+LKP G + + +
Sbjct: 50 WVNLLSAVIAEHDRILKPGGFMVINIAD 77
>gi|38233404|ref|NP_939171.1| putative DNA methylase [Corynebacterium diphtheriae NCTC 13129]
gi|38199664|emb|CAE49323.1| Putative DNA methylase [Corynebacterium diphtheriae]
Length = 667
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 26/199 (13%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V I+ DPP+N Y +
Sbjct: 74 NLLINGESGDVLEALTRVPELADKYVGKVKCIYIDPPFNTAQTFANYEDN---------- 123
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
+ R LL +++L +G++WV R+ ++ V
Sbjct: 124 ----LEHSVWLTMMRDRLLHMKKLLSEDGSIWVHLDDVENHRMRLLMDEVFGAGNFVAEV 179
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ P + +T++ S + A A D P S
Sbjct: 180 VWEKTYSPRNDSKGIPAVTDTILVYRKSDQFSPNRLPRTAEMNARY-KNPDHDRNGPWKS 238
Query: 191 GSERLR-NKDGEKLHPTQK 208
G N G+ HP+
Sbjct: 239 GDTTAPGNMSGKVQHPSVF 257
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E + T KPE LL R++ +T PGDI+LD F GSGT+ AVA K+ R ++
Sbjct: 385 KEITALFPNQAAFSTPKPERLLERVIHIATNPGDIVLDCFAGSGTTAAVAHKMGRRWVTC 444
Query: 252 EMKQDYID-IATKRIASVQPLGN 273
E+ +D + R+ V +
Sbjct: 445 ELLEDTFNRFTVPRLTKVVSGED 467
>gi|306828378|ref|ZP_07461620.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
10782]
gi|304429428|gb|EFM32495.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
10782]
Length = 253
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 28/236 (11%)
Query: 41 DLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
LI AD PYNL N P + S + + K D + C R+L
Sbjct: 26 QLIIADIPYNLGNNAYASDPRWYENGSNKNGESKLAGKSFFDTDNDFKINNFFDFCSRLL 85
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
+ + M+ + ++ N ++ +
Sbjct: 86 RKE--------PKEKGKAPAMIVFHAWQQRELVIACGKKHGFNNA---------YPLYFT 128
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL-------RNKDGEKLHPTQKP 209
+ N + A E + D L +G + ++ +HPTQKP
Sbjct: 129 KKSSPQVLKANMKIVGAVEEATVLYRDKLPKFNNGGAMILNHAPWEKDSSYPVIHPTQKP 188
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+L R++ T P D+++DP GSG++ A ++ R+ G E+K+D+ A + +
Sbjct: 189 IPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAKEEM 244
>gi|322835213|ref|YP_004215239.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
gi|321170414|gb|ADW76112.1| DNA methylase N-4/N-6 domain protein [Rahnella sp. Y9602]
Length = 351
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
II +S+ ++ LP +DLI DPPY + WD ++ AY
Sbjct: 12 IICADSLQYIKTLPDDCIDLIATDPPY---------------FRVKSCKWDNQWPDESAY 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ R+LKP+G+L+V + +L F ILN I+W K + N +
Sbjct: 57 LAWLDEVFAEFWRILKPSGSLYVFCGSR-LAADTELLMRERFKILNHIIWAKPSGPWNRQ 115
Query: 142 GRRFQNAHE 150
+ ++
Sbjct: 116 HKEDLRSYF 124
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP ++ I+ +S++PGD++ D F GSG++ A KL R +G+E++++
Sbjct: 282 HPCEKPAEMMRDIISASSRPGDVVADFFMGSGSTIKEAIKLGRFALGVELEEERYKQTFG 341
Query: 264 RI 265
I
Sbjct: 342 EI 343
>gi|188524337|ref|ZP_03004371.1| adenine specific DNA methyltransferase [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195660179|gb|EDX53559.1| adenine specific DNA methyltransferase [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
Length = 529
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 25/245 (10%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLP-------------AKSVDLIFADPPYNLQLNG 55
+N+ N + +I G + VL+ L D+I+ DPPYN + +
Sbjct: 80 MNDAHNLFKNDTNSLIIGENYDVLKNLLVLERERERETSGRDAYYDVIYIDPPYNTEASK 139
Query: 56 QLYRPDHSLVDAVTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
D V + DKF S + L + +LK +G ++V +
Sbjct: 140 TDGNNFSEKDDVVASKFVYRDKF-SRNGWLNMMNERLKLAKNLLKNDGVIFVSIDDNEQA 198
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ ++ + + + HE ++ S + + +
Sbjct: 199 YLKVLMDEIFGEENFVTNFIWQKKSGGGLNKLIYEGHEYILCYSKNNYNFCLSEKNKKMS 258
Query: 173 AA--NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL----SRILVSSTKPGDI 226
+D S ++ + + KD + H + E L + +
Sbjct: 259 GFIKYKDKNNNSFFINSDIIRNNFGK-KDNKFEHRNKAYEDLSKEDKEKWNLKLDNKN-Y 316
Query: 227 ILDPF 231
IL PF
Sbjct: 317 ILVPF 321
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 10/124 (8%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMK 254
KP L+ +L + +LD F GSGT+G + R+F +
Sbjct: 368 NIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVLELNKEDGGNRTFTLVTNN 427
Query: 255 QDYI--DIATKRIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
++ I ++ +R+ + E + E + + + I +
Sbjct: 428 ENQIGTNVCYERLYRINNGVGTKNEADFDWINKNEAYLNNLNVYDLKYFNTNPIKIDNNE 487
Query: 311 NISA 314
A
Sbjct: 488 IKEA 491
>gi|160941925|ref|ZP_02089251.1| hypothetical protein CLOBOL_06820 [Clostridium bolteae ATCC
BAA-613]
gi|158435157|gb|EDP12924.1| hypothetical protein CLOBOL_06820 [Clostridium bolteae ATCC
BAA-613]
Length = 631
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 14/152 (9%)
Query: 21 DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWDK 74
+ I+G+++ VL+ L V +I+ DPPYN + + VT K
Sbjct: 90 NLYIEGDNLEVLKLLQKSYFCGVKMIYIDPPYNTGNDFVYEDDFADPMRRYMEVTQQTTK 149
Query: 75 FSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW--IL 126
+ + L +L+ +G +++ + I + + +
Sbjct: 150 SNPETMGRYHTNWLNMMYPRLRLAANLLRDDGVIFISINDSEITNLRKLCDETFGEENFV 209
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
D++W + + F+ HE ++ +
Sbjct: 210 VDLIWTNKEGGGSSDSKLFRIKHEHILCYCKN 241
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 22/169 (13%)
Query: 93 RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ P+GT + +N + F + + PN + +
Sbjct: 289 YPITAPDGTEIMPADNNNGKKACWRWSQDKFKWGQSNGFVEIKKDPNDIWTVYTKQYLNC 348
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
K M S+ L+N K+ KP L
Sbjct: 349 DNEGNIIKRTQ--------------RPMSVIDKFSSTQASKLLQNLFDGKVFDYSKPVDL 394
Query: 213 LSRILVSSTKP--GDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
+ ++ K D+ILD F GS T+ + R FI +++
Sbjct: 395 IIYLMQRVLKEKSNDLILDFFSGSATTAHAIMQLNAKDGGNRRFIMVQL 443
>gi|312878205|ref|ZP_07738132.1| Site-specific DNA-methyltransferase (adenine-specific)
[Caldicellulosiruptor lactoaceticus 6A]
gi|311795018|gb|EFR11420.1| Site-specific DNA-methyltransferase (adenine-specific)
[Caldicellulosiruptor lactoaceticus 6A]
Length = 1012
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/211 (13%), Positives = 70/211 (33%), Gaps = 19/211 (9%)
Query: 5 NSLAINENQNSIFEWKDKI-IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
L +N + E D I IK + L L + + I+ DPPYN + LY+
Sbjct: 470 KLLVAISGKNDLDEILDGILIKSENWQALNLLMGKYKEMIKTIYIDPPYNTGNDDFLYKD 529
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ ++ + L + +L +G ++V + + + +++
Sbjct: 530 SYQ--------------HSSWLSMMENRLKLAKELLSDDGVIFVSVDDNEVDNLNKLMKE 575
Query: 121 L-NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + K P + + H+ ++ + + + ++
Sbjct: 576 ILGNENFVANIIWKKKNSPQNDAKWLSDNHDFILLYASNKSKWKPNLLRRSENQLSKYKN 635
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ D P ++ + + ++P P
Sbjct: 636 IDDDPRGPWTPSDLSVKTYNEKYVYPIIDPI 666
>gi|17225502|gb|AAL37437.1|AF328910_2 type II DNA modification enzyme [Helicobacter pylori]
Length = 343
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 102/328 (31%), Gaps = 77/328 (23%)
Query: 21 DKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +I+ + L L +DLI+ DPP+ + + + + + +
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAY 62
Query: 76 SS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------------- 119
S + F + L+ + +L G+++V + ML
Sbjct: 63 SDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNFRNEIT 122
Query: 120 ----------NLNFWILNDIVWRKSNP--------------------MPNFRGRRFQNAH 149
+ + + D++ S P + +
Sbjct: 123 RIKCNPKNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTT 182
Query: 150 ETLI--------WASPSPK-------AKGYTFNYDALKAANEDVQMRSDWLIPIC----- 189
+ S + K T + E + S+ P
Sbjct: 183 VPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYAL 242
Query: 190 -SGSERLRNKDGEK-----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+R+++ K +PT+K LL I+ +S+ I+LD F GSGT+ A
Sbjct: 243 EQAGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFL 302
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+R FIGI+ I ++ ++
Sbjct: 303 LQRKFIGIDNSGLAIQACKNKLETITKD 330
>gi|313892471|ref|ZP_07826061.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
345-E]
gi|313119153|gb|EFR42355.1| DNA (cytosine-5-)-methyltransferase [Dialister microaerophilus UPII
345-E]
Length = 299
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 55/290 (18%), Positives = 104/290 (35%), Gaps = 37/290 (12%)
Query: 5 NSLAINENQNSIFEWKDK-----IIKGNSISVLEK--LPAKSVDLIFADPPYNLQLNGQL 57
L N S ++KDK + ++ ++ +P L+ AD PY L+
Sbjct: 12 ERLNKVNNAKSEKKYKDKPIKIELYN-DNFQNYKRYNIP--KAQLVIADIPYRLEEKAYA 68
Query: 58 YRPDHSLVDAVTDSWDKFSS-----------FEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
P ++ KF++ Y F L+ + + V
Sbjct: 69 SSPKWYKNGDNSNGESKFANKSFFKTDEIFRIAEYMHFCSKLLIKEPKERGKAPAMIVFC 128
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF---QNAHETLIWASPSPKAKG 163
S+ I + + F I + K+ + H +++ PK
Sbjct: 129 SFEQIPIVVEYGKKYGFAHNYPIFFIKNYSAQVLKANMKIVGAVEHAVVLYRDKLPKFNN 188
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
N D N + R + I K+HPTQKP +L +++ T
Sbjct: 189 TDENGDRHMIFNYFIWKRDNQKIYP-------------KIHPTQKPVNILKKLIEIFTDE 235
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
D+++DP GSG++ +L RS G E+++++ A +++ + + N
Sbjct: 236 KDVVIDPVAGSGSTLRACMELNRSCYGFEVEKEFYRSAKEKMLNAKINDN 285
>gi|255325645|ref|ZP_05366742.1| DNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
gi|255297255|gb|EET76575.1| DNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
Length = 419
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 15/175 (8%)
Query: 18 EWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSW 72
+ ++I +++ VL++L A + D+I+ DPPYN + YR L W
Sbjct: 52 DSLNRIFAADNLPVLQELAARREVFDVIYIDPPYNTGKDFVYRDNYRLRRQLRSGSYAEW 111
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVW 131
+ + L+ R VL G ++V + +L +
Sbjct: 112 -----HSEWLSMMLPRLILAREVLSSEGFIFVSIGEDEVANTRKVLDEVFGEGCFAGQLI 166
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD----ALKAANEDVQMRS 182
K + HE ++ + + G+ + +D S
Sbjct: 167 WKKAGTGKNDAKYAVVEHEYILCYARTSDNPGFNIDIQGHTSTKYNHEDDKGKYS 221
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+ KP L+ +L +LD F GSGT+ +L R+F ++
Sbjct: 323 IFDFPKPVRLIKHLLSIGGGKDARVLDFFAGSGTTAQAVIELNAEDGGSRTFHLAQI 379
>gi|304437762|ref|ZP_07397712.1| adenine specific DNA methylase Mod [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369210|gb|EFM22885.1| adenine specific DNA methylase Mod [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 532
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 10/156 (6%)
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+P GR + + ET + + + + + E
Sbjct: 225 KLPPPDGRCWALSEETFHSLLKDNRIWLGADGTSRPRQKKFLSEAKGVVPWTWWTNKEVG 284
Query: 196 RNKDGEKL----------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
N++ +K T KPE L+ RIL ++ GD++LD F GSGT+ AVA K+
Sbjct: 285 HNQEAKKEVIALFGPESPFDTPKPERLIQRILQIASNEGDLVLDAFLGSGTTAAVAHKMN 344
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
R +IGIEM R+ V ++
Sbjct: 345 RRYIGIEMGDHCYTHCKARLDKVVDGEQGGISKAQS 380
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 23/180 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +I G+++ L L V ++AD PYN S D+ +
Sbjct: 40 NMLIHGDNLLALRALLPRYGGQVKCVYADIPYNTG----------SAFSQYDDNLE---- 85
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ R + ++L +G+LWV + +L +
Sbjct: 86 HSTWLNLIRPRMEILYQLLNRDGSLWVSIDDDEQAYVKVLLDEIFSRKNFIASIVWQKRT 145
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNY------DALKAANEDVQMRSDWLIPICSG 191
+ H+ ++ + A + NY A N D R W +G
Sbjct: 146 SPDMRSVISDGHDYVLVYAKDKDAFKASRNYLPLSPEQASSYKNPDNDPRGPWRSIDLTG 205
>gi|227548305|ref|ZP_03978354.1| DNA restriction-modification system, DNA methylase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079623|gb|EEI17586.1| DNA restriction-modification system, DNA methylase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 627
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-I 260
K T KPE LL RI+ +T PGDI+LD F GSGT+ AVA+K+ R ++ E+ +D +
Sbjct: 355 KAFDTPKPERLLERIIHIATNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELVEDTFNRF 414
Query: 261 ATKRIASVQPLGNIELTVLTGKRTE 285
R+ V + L +
Sbjct: 415 TRPRLEKVVNNEDQGGITLQKEERA 439
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 26/148 (17%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V I+ DPP+N Y +
Sbjct: 33 NLLILGESGDVLEALTRMPEWSEKYVGKVKCIYIDPPFNTAQTFANYEDN---------- 82
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN--FWILNDI 129
+ R LL R +L +G++WV R+ +L + L +I
Sbjct: 83 ----LEHSVWLTMMRDRLLHMRDLLSEDGSIWVHLDDVENHRMRVLLDEVFGAGNFLAEI 138
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASP 157
W+K + N G ++ + + +
Sbjct: 139 TWKKGAQVRNNSGDFSSDS-DFITVYAK 165
>gi|262066934|ref|ZP_06026546.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
ATCC 33693]
gi|291379347|gb|EFE86865.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum
ATCC 33693]
Length = 389
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 10/171 (5%)
Query: 4 KNSLAINENQNSIFEWKDK---IIKGNSISVLEKLPAK---SVDLIFADPPYNLQ---LN 54
+ + +N+ + K+K IK ++ + +L + VDL++ DPPYN +
Sbjct: 15 EKKILTCKNKFLSLKTKNKYGLFIKDDNFIAMSRLLDEYQGKVDLVYIDPPYNTKSIFYY 74
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
S V ++ +F+ Y F R L+ ++L P GTL++ I
Sbjct: 75 DNKKTSTISSSKNVDIAYKDNMNFKDYLEFIRERLILIHKLLSPKGTLYLHIDIKVGHYI 134
Query: 115 GTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+L + + R + NF + N + + S K +
Sbjct: 135 KIILDEIFGTNNFINDITRVKSNPKNFSRNAYGNEKDVIYVYSKIEKNNIF 185
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+PTQK +L I+ S+ II+D F GS + + K R IGI+ DIA K
Sbjct: 295 YPTQKNFDMLELIIKQSSNENSIIMDCFAGSASFLEMGLKNNRFVIGIDNS----DIAYK 350
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
+ S Q L IE+ + K E + L + +I+
Sbjct: 351 LLLSNQNLQKIEVIIQDKKNNEKQFKQMNLFKEEIIE 387
>gi|170079551|ref|YP_001736185.1| DNA methylase [Synechococcus sp. PCC 7002]
gi|169887220|gb|ACB00930.1| DNA methylase [Synechococcus sp. PCC 7002]
Length = 937
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 35/220 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKL-----PAKSVDLIFADPPYNLQLNGQLYRPDHSL---- 64
N W +++I G+S+ V+ L V I+ DPPY ++
Sbjct: 128 NHDIGWSNRMILGDSLLVMNSLAEKEGLKGKVQCIYLDPPYGIKFGSNWQVSTLKRDVKD 187
Query: 65 ------------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
V A D+W+ +Y A+ R L+ R +L G+ +V N+
Sbjct: 188 GNADNVTRQPEQVKAFRDTWELG--IHSYLAYLRDRLVVARELLTETGSCFVQIGDENVH 245
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
+ ++ + F N I + + ++W + Y
Sbjct: 246 LVRCLMDEV-FGSDNFINLITVVKTTSATTSLLSGVCDYVVWYAKEKNNVKYRQ------ 298
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
+ S R+ ++G K Q P+ L
Sbjct: 299 -----LFFEKKIGGQGASAYNRILLENGLKKTINQIPKQL 333
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
EK++ Q + R ++ +T PGD++LDP GSGT+ VA++ R +I I+ + + +
Sbjct: 428 EKIYVVQGNPKITERCILMATDPGDLVLDPTCGSGTTAYVAEEWGRRWITIDTSRVALAL 487
Query: 261 ATKRIASVQ 269
A R+ S +
Sbjct: 488 ARTRLMSAK 496
>gi|188518306|ref|ZP_03003823.1| type III restriction-modification system: methylase [Ureaplasma
urealyticum serovar 11 str. ATCC 33695]
gi|188998050|gb|EDU67147.1| type III restriction-modification system: methylase [Ureaplasma
urealyticum serovar 11 str. ATCC 33695]
Length = 530
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 34/239 (14%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLP-------------AKSVDLIFADPPYNLQLNG 55
+N+ N + +I G + VL+ L D+I+ DPPYN + +
Sbjct: 80 MNDAHNLFKNDTNSLIIGENYDVLKNLLVLERERERETSGRDAYYDVIYIDPPYNTEASK 139
Query: 56 QLYRPDHSLVDAVTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
D + DKF S + L + +LK +G ++V +
Sbjct: 140 TDGNNFSEKDDVAASKFVYRDKF-SRNGWLNMMNERLKLAKNLLKNDGVIFVSIDDNEQA 198
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS------PKAKGYT 165
+ ++ + N P + H+ ++ + T
Sbjct: 199 YLKVLMDEIFGEENFTCNFVWEKNYAPKNNNKFVSVNHDYILCYCKNKILKNKFNRNQRT 258
Query: 166 FNYDALKAANEDVQMR----------SDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
+ L +D ++ I G + L K+ L+ +K L+
Sbjct: 259 EKNNRLYFYKDDRGFYKSSDLTKKGSNNIYDIIWDGKKYLCPKNSSWLYNEEKMYELIK 317
Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 10/133 (7%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LR 245
++L + T KP L+ ++ ++ ILD F GSGT+G
Sbjct: 361 KKQLDSILDNHNFNTPKPIELIKYLINIASTNNARILDFFAGSGTTGHAVLALNKEDGGN 420
Query: 246 RSFIGIEMKQDYI--DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
R+F + ++ I ++ +R+ + E + +P + + +
Sbjct: 421 RTFTIVTNNENEIGTNVCYERLYRINNGFGTKNETDFDWINKNKPYLNNLNVYDLKYFDT 480
Query: 302 GQILTNAQGNISA 314
I + A
Sbjct: 481 NPIKIDNNEIKEA 493
>gi|325912635|ref|ZP_08175018.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
gi|325478056|gb|EGC81185.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
Length = 381
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS 63
+ E + + +++G+++ L+ L +D+I+ DPPYN +Y D S
Sbjct: 12 VKEREIKAKDENSYNFLLEGDNLHSLKLLEKTHAGKIDVIYIDPPYNTGNKDFIY--DDS 69
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
VD S + +F L + +L G +++ H ++ + ++
Sbjct: 70 FVDKTD-----GYSHSKWLSFMSERLEIAKLLLSEEGVIFISIDDHEQAQLKLLCDSVFG 124
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
++ HE L+ + +
Sbjct: 125 ADNFIAESIDASNSSKNNSNYIAVNHEYLLCYAKN 159
>gi|91204434|emb|CAJ70934.1| similar to adenine-specific DNA methylase [Candidatus Kuenenia
stuttgartiensis]
Length = 368
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 71/203 (34%), Gaps = 24/203 (11%)
Query: 19 WKDKIIKGNSISVLEKLP----------AKSVDLIFADPPYNLQLNGQL----------Y 58
W +K+I G++ +L L + LI DPP+++ + +
Sbjct: 110 WTNKLIWGDNKLILSSLKNGPLRAEIEKEGGIKLICIDPPFDVGADFSMDIEIGDDTFTK 169
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+P+ A D+W K + ++ A L+ R +L NG+++V + + ++
Sbjct: 170 KPNVLEELAYRDTWGKGAD--SFIAMIYERLVLMRDLLVENGSIYVHCDWRVNSFMRLVM 227
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ + + R P + + K+ YT+N + +
Sbjct: 228 EEVFGTSVYRNEIRWKRQPPRGAKAISRQYARSSDSMLYYTKSDSYTWNAQFKEY--DQK 285
Query: 179 QMRSDWLIPICSGSERLRNKDGE 201
+ S + G + G+
Sbjct: 286 YILSKFNKQDKDGRWYRIDNIGD 308
>gi|209528419|ref|ZP_03276856.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|209491146|gb|EDZ91564.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 375
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 24/158 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ + V+++LP+ S D PPY + F Y
Sbjct: 46 LLMLGDVLEVMKELPSDSFDCCMTSPPYWGKREYD------------AGGIGLEPDFNTY 93
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIG--SYHNIFRIGTMLQ-------NLNFWILNDIVWR 132
RVLK G+ W+ SY+N +G + N + + N ++W
Sbjct: 94 IDNLCLVFSEVHRVLKKTGSFWLNIGDSYYNKNLLGLPWRIALNLTDNQGWILRNSVIWN 153
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
K P+ R +N HE + + Y ++ D+
Sbjct: 154 KVKGGPDNSKDRLRNIHENVFHFVK---SSRYYYDIDS 188
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ +LH P L + S+ P IILDPF G+GT+ VA+ L R GI++
Sbjct: 303 DAQKRELHFAPYPVDLCKIPISSTCPPNGIILDPFCGTGTTMLVAQLLGRKSCGIDLSPQ 362
Query: 257 YIDIATKR 264
Y++IA +R
Sbjct: 363 YLEIAKER 370
>gi|188528159|ref|YP_001910846.1| adenine-specific DNA methylase [Helicobacter pylori Shi470]
gi|188144399|gb|ACD48816.1| adenine-specific DNA methylase [Helicobacter pylori Shi470]
Length = 358
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG---SERLRNKDGEKL 203
N H S YD +K A + ++ R+ + + E L +G KL
Sbjct: 120 NEHIFWQENSKGRLIPYEVIYYDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKL 179
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
T KPEALL RI+ ST+ D++LD F GSGT+ AVA KL+R +IGIEM + + +
Sbjct: 180 FDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILP 239
Query: 264 RIAS 267
R+
Sbjct: 240 RLKK 243
>gi|300119345|ref|ZP_07057018.1| type III restriction-modification system, Mod subunit [Bacillus
cereus SJ1]
gi|298723273|gb|EFI64042.1| type III restriction-modification system, Mod subunit [Bacillus
cereus SJ1]
Length = 175
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ + + + +E W E +P
Sbjct: 47 THNYRYVDSDGRRYREDIRKNGKVYRYYLDEGKIPEDSWTDIDSLHHE----LAERLEYP 102
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
TQKPEALL RI+ S+T+ GD++ D F GSGT+ AVA+KL R +I ++ + I KR+
Sbjct: 103 TQKPEALLRRIIKSATRKGDLVADFFVGSGTTAAVAEKLGRRWIATDLGKFGIHTTRKRL 162
Query: 266 ASVQ 269
VQ
Sbjct: 163 IGVQ 166
>gi|313143920|ref|ZP_07806113.1| LOW QUALITY PROTEIN: adenine specific DNA methyltransferase
[Helicobacter cinaedi CCUG 18818]
gi|313128951|gb|EFR46568.1| LOW QUALITY PROTEIN: adenine specific DNA methyltransferase
[Helicobacter cinaedi CCUG 18818]
Length = 191
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDII 227
A K ++ S + N + +K HP P L R + + GD++
Sbjct: 80 AWKKKHKGESDISKEEFMAWTNGLWSFNGESKKRIGHPAPFPRELPKRCIKLFSYVGDVV 139
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
DPF GSGT+ + R FIGIE+ ++Y +++ KR
Sbjct: 140 FDPFCGSGTTMIESYLNNRQFIGIELDREYCELSKKRF 177
>gi|315637799|ref|ZP_07892991.1| type III R-M system methyltransferase [Campylobacter upsaliensis
JV21]
gi|315482142|gb|EFU72754.1| type III R-M system methyltransferase [Campylobacter upsaliensis
JV21]
Length = 670
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 18/142 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L V LI+ DPPYN + Y + +
Sbjct: 163 NLLIKGNNLLALHSLKKKFANKVKLIYIDPPYNTGNDSFNYNDN--------------FN 208
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
+ F + L R L +G +++ + + + V R++
Sbjct: 209 HSTWLTFMKNRLEIAREFLSDDGVIFIQCDDNEQAYLKVLCDEIFGRDNFVGCVVRQTRS 268
Query: 137 MPNFRGRRFQNAHETLIWASPS 158
F H+ ++ + +
Sbjct: 269 GGGFGTSDIGITHDYVLVYAKN 290
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
L D L T KPEAL+ RI+ ST D+++D F GSGT+ AVA K++R FIGIE
Sbjct: 459 LFENDNTTLFATPKPEALIKRIIEISTNENDLVMDFFAGSGTTLAVAHKMKRRFIGIEQM 518
Query: 255 QDYIDIATKRIAS 267
I +R+
Sbjct: 519 DYIESITKERLKK 531
>gi|300724259|ref|YP_003713577.1| putative DNA methylase [Xenorhabdus nematophila ATCC 19061]
gi|297630794|emb|CBJ91463.1| putative DNA methylase [Xenorhabdus nematophila ATCC 19061]
Length = 345
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
+I +S+ ++ LP +DLI DPPY V A + WD +++ A
Sbjct: 7 TLINDDSLKFIKTLPDNCIDLIATDPPYF-------------RVKACS--WDNQWADVTA 51
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
Y A+ L C RVLKPNG+L++
Sbjct: 52 YLAWLDELLAECWRVLKPNGSLYMFCGSR 80
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP L++ I+ SS++ GD++ D F GSG + A KL R +G+E++++ +
Sbjct: 278 HPCEKPADLMAHIIQSSSREGDLVADFFMGSGATLKTALKLNRRVLGVELEEERFKQTIQ 337
Query: 264 RIASV 268
I
Sbjct: 338 EINGQ 342
>gi|329121504|ref|ZP_08250128.1| type III restriction system methylase [Dialister micraerophilus DSM
19965]
gi|327469419|gb|EGF14889.1| type III restriction system methylase [Dialister micraerophilus DSM
19965]
Length = 677
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 20/172 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS---- 63
E + ++ I+G+++ VL+ L + +I+ DPPYN N LY+ D S
Sbjct: 101 EESVNFDTTENLYIEGDNLEVLKLLQETYLGKIKMIYIDPPYNTG-NNILYKNDFSIPKE 159
Query: 64 LVDAVTDSWDKFSSF------------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+++ D + +F + L R +LK G + + + +
Sbjct: 160 EYIDLSNQKDAYGNFLFQNTESNGRFHTDWLNIMYPRLKLARNLLKDEGYIAIAIDDNEV 219
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ + ++ + + HE + S +
Sbjct: 220 YNLKKIMDEIFGEKNYIGTIIIRSNPQGRNKDNIDPVHEYHLVYSRNYTKMP 271
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
D + G+ L+ +K+ K + ++ +++ DIILD F GS T+
Sbjct: 399 WYDDIYSNVSKGTNSLKKIFNDKIIFDFSKSLYTVRDLISLNSEDEDIILDFFSGSATTA 458
Query: 239 AVAKK------LRRSFIGIEM-----------KQDYIDIATKRIASVQPLGNIELTVLTG 281
+ R FI +++ + I + + L G
Sbjct: 459 HATMQLNAEDGGNRKFILVQLPENLDESLKKANDNAKKTIENAIKFLDSINRPHLLTEIG 518
Query: 282 KRTEPRVAFNLLVER 296
K R +L E
Sbjct: 519 KERIRRAGKKILEEN 533
>gi|163796565|ref|ZP_02190524.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
gi|159178125|gb|EDP62670.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
Length = 437
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 29/250 (11%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKF 75
+++ G+S ++ L + DPPY + +G + + + +WD
Sbjct: 176 HRLLCGDSTKPEDVQHLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSQSYGVTWDDS 234
Query: 76 -SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ YD F A + + + + + + + ++ I+W K
Sbjct: 235 SQGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQGMLEACWEKAGAFVHQQIIWVKD 291
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ +H + + D + S W +P + ER
Sbjct: 292 RGV-------LTRSH-----YLWKHEPCFMGWRRPNRPPKVADDTLPSTWELPSFAKDER 339
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HPT KP + G + +PF GSG+ + R +E+
Sbjct: 340 P-------DHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEIS 392
Query: 255 QDYIDIATKR 264
Y+D+A +R
Sbjct: 393 PAYVDVAVER 402
>gi|291622001|emb|CAX65034.1| gp53 protein [Vibrio phage VP58.5]
Length = 163
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%)
Query: 13 QNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
Q + K+ + + +L+ LP SVDLI DPPY DA +
Sbjct: 3 QKKLEPRKNITVFNADCSQLLKTLPDNSVDLIATDPPYF-----------RVKQDAWDNQ 51
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
WD + A+ L RVLKP+G+L++ S R ++ + + +
Sbjct: 52 WD---DEAEFLAWLDDILFDLWRVLKPSGSLYLFCSDRLAARTEVLIAERFNVLNHIVWR 108
Query: 132 RKSNPMPNFRG 142
+++ R
Sbjct: 109 KENGVHKRHRK 119
>gi|262039287|ref|ZP_06012604.1| nuclease [Leptotrichia goodfellowii F0264]
gi|261746677|gb|EEY34199.1| nuclease [Leptotrichia goodfellowii F0264]
Length = 400
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 50/248 (20%)
Query: 23 IIKGNSIS------VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ G+S +L+ + ++L DPPY + + + K
Sbjct: 183 LMCGDSTKKDNFEKLLKDID---INLCLTDPPYGINIVKNGKIGAENAAKTTEYKKVKGD 239
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + + + G L + WI+ D
Sbjct: 240 ETTETAQKSFELIKQYSEK------VILFGG----NYFTAFLPFSDGWIVWDK------- 282
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + A + V++ + ER
Sbjct: 283 -------------------RKDMNSNNFADGELAWCNFHTPVRIYKQLWNGMIREGER-- 321
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
G+++HPTQKP +L IL +K D ILD F GSG++ ++ R+ IE ++
Sbjct: 322 ---GKRVHPTQKPIRMLGEILQDFSKENDNILDVFGGSGSTLIACEETGRNCYMIEYEEH 378
Query: 257 YIDIATKR 264
Y ++ KR
Sbjct: 379 YCNVILKR 386
>gi|254436859|ref|ZP_05050353.1| DNA methylase [Octadecabacter antarcticus 307]
gi|198252305|gb|EDY76619.1| DNA methylase [Octadecabacter antarcticus 307]
Length = 279
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 16/191 (8%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ II+G+++ L+ L A VD IF D PYN G Y + ++ + W
Sbjct: 40 NLIIQGDNLKALKALMPMYAGKVDCIFIDLPYNTGNEGWAY--NDNVNAPMIKEWLESNP 97
Query: 73 ---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILND 128
+ + + A L +L NG+LWV + + +L
Sbjct: 98 IGIEDGLRHDKWYAMMWPRLKLLHELLDENGSLWVTIDDNEDHLLRQLLDEIFGRDGYIT 157
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--YDALKAANEDVQMRSDWLI 186
+ + + + +F T++ S + + N D W
Sbjct: 158 EIAWRHSDNSSNNVTQFSQDFNTVLVYSKNEYWAPNFLDSPEKRSHFTNPDNDPDGAWFD 217
Query: 187 PICSGSERLRN 197
+ +R
Sbjct: 218 GNPVNNPAIRP 228
>gi|237755767|ref|ZP_04584371.1| modification methylase, type III R/M system [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692077|gb|EEP61081.1| modification methylase, type III R/M system [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 984
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 51/360 (14%), Positives = 103/360 (28%), Gaps = 61/360 (16%)
Query: 1 MSQKNSLAINENQNSIFEWKD----KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL 53
++ + E + + +D +IK + L + V I+ DPP+N +
Sbjct: 450 FDEEFKFRLLEKISESVDLEDALDGLLIKSENWQGLNTILNKYGNRVQTIYIDPPFNKEQ 509
Query: 54 N----GQLYRPDHSLVDAVTD----------SWDKFSSFEAYDAFTRAWL---------- 89
+ + D + + + + Y+ L
Sbjct: 510 DADYLYNVKYKDATWISMLENRLSLARELLNEKGSIFVRCDYNGNMYVRLLMNEIFGKEI 569
Query: 90 -------------------------LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
K + + + + +
Sbjct: 570 FRNEIVVNRTKKIFTGVKGYNVATDSLFFFTKKEDFKFYAQYKQREQEQKWLNMHSPGER 629
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ + P +GR + ET+ + + N+ M
Sbjct: 630 RPPERIIFGKVFYP-PKGRHWTFTQETIDKMIKEGRIRIKEDVEYIDLMGNKVKGMPQYL 688
Query: 185 LIPICSGSERLRNKDGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ G T+ E LL R++ S++ D+++D F GSGT+ AVA
Sbjct: 689 TGEEELLDSNWTDIPGYSFGWDFQTENSEILLKRVIESTSNENDLVMDFFLGSGTTTAVA 748
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL-TVLTGKRTEPRVAFNLLVERGLIQ 300
KLRR +IGIEM + + + R+ V + K + +++
Sbjct: 749 HKLRRKWIGIEMGEHFWTVIMPRMKKVLAYDKSGISKEKDVKEKYNEKTAGGFFKYQILE 808
>gi|261493911|ref|ZP_05990420.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261310414|gb|EEY11608.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 490
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ II+G+++S L+ L A V IF DPPYN + +D
Sbjct: 65 NLIIQGDNLSALKSLLPFYAGQVKCIFIDPPYNTKSAFT--------------HYDDNLE 110
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
+ + L R +L +G++W+ + + ML + +
Sbjct: 111 HSVWLSMMYPRLEILRDLLAEDGSIWITLDDNESHYLKIMLDEIFGRKNFISNLIWEKKR 170
Query: 137 MPNFRGRRFQNAHETLIWASPSPK 160
P+F G+ + + L + +
Sbjct: 171 KPSFLGKVGK-VTDNLFCYAKNKN 193
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
KPE L+ +L +ST+P D++LD F GSGT+ AVA K R +IGIE+ +
Sbjct: 346 FDYPKPEKLIQFVLEASTEPYDLVLDSFLGSGTTAAVAHKTNRRYIGIEIGEHAKTHVVP 405
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
R+ V ++ + L G+ + +A G+++ + D
Sbjct: 406 RLKKVIEGEQGGIS-----KAVNWQGGGSFRFCEL---GEEVFDAFGSLNPNIRFD 453
>gi|282897342|ref|ZP_06305344.1| DNA modification methylase [Raphidiopsis brookii D9]
gi|281197994|gb|EFA72888.1| DNA modification methylase [Raphidiopsis brookii D9]
Length = 357
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 19/214 (8%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
Q + +++++II G+++S+L+++ + DLI PPY Q + + + +
Sbjct: 16 QQQVLDFRNQIILGDNLSILKQIENDTFDLIITSPPYFQQRDY------GNDNLGIGNE- 68
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI------- 125
++ Y C RVLK G + I +++
Sbjct: 69 ---TTQAEYLENILTVFWECVRVLKKTGAIVFNLGDKYINGSLSLIPYKFAIQATQNQSI 125
Query: 126 --LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+N I+W K NP P R+ A E + S NY
Sbjct: 126 FLINQIMWSKLNPTPRQDKRKLIQATEPFFLFAKSKDYYFNVDNYLQHLDTFNIGIKSKP 185
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
E ++N D + T +AL IL
Sbjct: 186 SDKLGKKYLELIKNSDLTEEQKTNATQALNQTIL 219
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
HP P ++ ++ TK GD +LDPF GSGT+ A+ L R ++GIE+ DY+++
Sbjct: 281 NNHHPAVYPLYIIQELIKLLTKEGDFVLDPFCGSGTTCIAARNLSRKYLGIEINPDYVNL 340
Query: 261 ATKRIAS 267
A R+
Sbjct: 341 ANNRMEE 347
>gi|56476791|ref|YP_158380.1| adenine specific DNA methylase MOD [Aromatoleum aromaticum EbN1]
gi|56312834|emb|CAI07479.1| Adenine specific DNA methylase MOD [Aromatoleum aromaticum EbN1]
Length = 601
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 57/152 (37%), Gaps = 24/152 (15%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L + V I+ DPP+N Q + +D
Sbjct: 45 FDNRLIFGDNLLALKALEQEFSGKVKCIYIDPPFNTQQAFE--------------HYDDG 90
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ R + RR+L +GTL+V + + + +L + + + +
Sbjct: 91 YEHSIWLGLIRDRAESLRRLLSDDGTLFVHIDDNELGYLIALLDEVF--GRRNRIGVVTF 148
Query: 136 PMPNFRGRRFQN-----AHETLIWASPSPKAK 162
+ G + N + +++ + +
Sbjct: 149 KQSSASGPKAINPGLVTTNNYILYYAKNKDVW 180
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 168 YDALKAANEDVQMRSDWLIPICSG--SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
Y A + + L + S L N+ G +KPEAL+ R L ST GD
Sbjct: 304 YKAKTRIIDGKSTTASPLTNLWDDLLSNNLHNEGGVSFPNGKKPEALIKRCLELSTTIGD 363
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
I+LD F GSGT+G+VA K+ R +I +E+ + R+ +V +
Sbjct: 364 IVLDSFAGSGTTGSVAHKMGRRWIMVELGEHCHTHIIPRLKAVIDGEDQS 413
>gi|315653151|ref|ZP_07906076.1| adenine specific DNA methylase Mod [Lactobacillus iners ATCC 55195]
gi|315489516|gb|EFU79153.1| adenine specific DNA methylase Mod [Lactobacillus iners ATCC 55195]
Length = 638
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 18/179 (10%)
Query: 15 SIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
++ + + IIKGN++ L L V I+ DPPYN + + +
Sbjct: 183 TLNDDDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTGSD--------------SFN 228
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-LQNLNFWILNDIV 130
++ + + F + L RR+L+ +GT+W+ H + + N D +
Sbjct: 229 YNDSFNHSTWLTFMKNRLELARRLLREDGTIWISCDDHESHYLKVLTDDIFNRDNFIDEI 288
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ P + +H+ ++ + + AN + + +
Sbjct: 289 VWQRAYAPVNLKKTLSRSHDIILVYAKNLDPNFTLNKLPRSDEANARYKNPDNDPRGVW 347
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G ++ + T K E L+ RIL +T GD++ D F GSGT+ AVA K+ R +IG
Sbjct: 437 GKREIKALHFNSIFDTPKQERLIERILTLATNEGDLVFDSFVGSGTTAAVAHKMGRRYIG 496
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
+E DI +R+ V ++
Sbjct: 497 VEQMDYIQDITVERLKKVLEGEQGGISKSQN 527
>gi|227536812|ref|ZP_03966861.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Sphingobacterium spiritivorum ATCC 33300]
gi|227243368|gb|EEI93383.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Sphingobacterium spiritivorum ATCC 33300]
Length = 663
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 21/165 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP----------- 60
+ E ++ II+G +++VL+ L + + I+ DPPYN +
Sbjct: 92 NPTESENLIIEGENLAVLKLLSQSYREQIKCIYIDPPYNTGNDFVYSDKFNQDRKEYWED 151
Query: 61 -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D +D+ ++ +F S + + LL R++L +G +++ + I +
Sbjct: 152 TEITEDGYKIDSNIETDGRFHSN--WLNMMYSRLLIARQLLCEDGVIFISLDDNEIHHLK 209
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + + + HE ++ + S
Sbjct: 210 KLCDEVFGEENFYSSIIVRSNSRGQTYNQIAKTHEYILVYTKSID 254
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
++ + + + G Y + + + +L G+ ++N E KP
Sbjct: 360 NIVAKAKADGSFGIYEKYRKTTYKPKSIWDENPFLTET--GTVEVKNLGFEGEFDFPKPV 417
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
L+ R + + + GD++LD F GSGT+G
Sbjct: 418 KLVRRCIELTVEKGDLVLDFFAGSGTTGQA 447
>gi|167933130|ref|ZP_02520217.1| DNA methylase N-4/N-6 [candidate division TM7 single-cell isolate
TM7b]
Length = 282
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/220 (13%), Positives = 70/220 (31%), Gaps = 27/220 (12%)
Query: 1 MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ +K ++ ++ + +W + I+G++++ L+ L V +I+ DPPYN +
Sbjct: 62 IQEKTVQTLHPDRANSVDWDTTGNMFIEGDNLAALKILHKAYYGKVKMIYIDPPYNTGND 121
Query: 55 G------QLYRPDHSLVDAVTDSWDK------------FSSFEAYDAFTRAWLLACRRVL 96
+ R + +TD + L R +L
Sbjct: 122 FIYNDDSKQTRRSYETEAGITDDEGNVVRDDGLRTNTGGHKHSNWLNMMYPRLFLARNLL 181
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL--I 153
+ +G ++V + + + M+ V + + F H+ + I
Sbjct: 182 RQDGVIFVSIDDNEVHNLRLMMNEIFGEENFVAQVIWEKVHTRKNSAQYFSYNHDYVVTI 241
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ + +N D + W + +
Sbjct: 242 ARKKDEWKRKLIPRENNSAYSNPDNDPKGVWKLDPIYANN 281
>gi|168697888|ref|ZP_02730165.1| ParB domain protein nuclease [Gemmata obscuriglobus UQM 2246]
Length = 681
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP L + +L +S PG ++LDPF GSGT+ A A++ R+ +E+ Y D+ +
Sbjct: 607 HPTPKPAELFAYLLNNSCPPGGLVLDPFAGSGTALAAAEQTGRNAALLELDPRYCDVIVQ 666
Query: 264 RIASVQPLGNI 274
R S+
Sbjct: 667 RFESLTGQKAE 677
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G++ + LP DL+ DPPYN+ +G+ DA+T + D
Sbjct: 162 RHRLLCGDATKPADLARLLPDGPADLLLTDPPYNVAYSGK-------TADALTIANDDM- 213
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
S E Y AF A L A + LKP G +V + + T + +VW KS
Sbjct: 214 SPEQYRAFLTAALTAAKAHLKPGGAFYVWHADTAGLDVRTACAAAGLQVRQCLVWVKSAL 273
Query: 137 MPNFRGRRFQN 147
+ + +++
Sbjct: 274 VLGRQDYHWKH 284
>gi|260431261|ref|ZP_05785232.1| site-specific DNA-methyltransferase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415089|gb|EEX08348.1| site-specific DNA-methyltransferase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 583
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 16/220 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL-------VDAVTD 70
+ +++G+++ L+ L A V I+ DPPYN G +Y + + V
Sbjct: 39 NLLVQGDNLEALKALLPYYAGKVKCIYIDPPYNTGNEGWVYNDNVASPEIKAWLGKVVGK 98
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ S + + L R L+ +G L+ + I +L+++ +
Sbjct: 99 EAEDLSRHDKWLCMMYPRLRLLREFLREDGVLFASIDANEIANFQLVLEDVFSGCSQIAI 158
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSP---KAKGYTFNYDALKAANEDVQMRSDWLIP 187
+N HE L+ + + + A ++ R +
Sbjct: 159 PVVNNMKGRNDREYISTCHEYLVMVAKTDFVSHGLPLSQQQKARFKHVDEEGYRYELRDL 218
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
G R + + P K +S I
Sbjct: 219 RKRGGADTRQERPQLWFPVYKHPETNE---LSLKPRDGWI 255
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 192 SERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------L 244
++L++ DG K KP +L+ +I+ +ILD F GSGT+G
Sbjct: 351 GKQLKDIFDGRKPFDYPKPISLVQKIMHMIGDEEALILDSFAGSGTTGQAVLDLNKKDGG 410
Query: 245 RRSFIGIEMKQD-YIDIATKRIAS 267
R FI +EM + +I KR+
Sbjct: 411 NRRFILVEMDEKIASEITAKRLRR 434
>gi|117924582|ref|YP_865199.1| DNA methylase N-4/N-6 domain-containing protein [Magnetococcus sp.
MC-1]
gi|117608338|gb|ABK43793.1| DNA methylase N-4/N-6 domain protein [Magnetococcus sp. MC-1]
Length = 271
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 57/281 (20%), Positives = 87/281 (30%), Gaps = 56/281 (19%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++ + + L +SV L+ PPY VT + K +F
Sbjct: 6 HTVYYADN-NNMHLLEDESVHLVVTSPPY------------------VTTEFKKGQAF-E 45
Query: 81 YDAFTRAWLLACRRVLK---PNGTLW-----VIGSYHNIF-----------RIGTMLQNL 121
YD F A+ C + K P G VI Y + + QN
Sbjct: 46 YDLFLDAFSSVCSSLFKVLVPGGRFALNVADVITKYRYKDSSLMARAPLGSDLLQVAQNS 105
Query: 122 NFWILNDIVWRKSN----------PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
F L +W K P N E + K ++
Sbjct: 106 GFRFLERYIWDKGYTRNFGGPLLGSFPFPLTVYNNNYFEYIYILYKPGKRTV----KQSV 161
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ ++E E + K H P + RI+ + GD ILDP+
Sbjct: 162 RKSSEFSLEEWRIWTQQWWRVESITEKFD--YHRAVFPIEIPYRIIRMYSYVGDTILDPY 219
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
GSG + + RS IG E++ DI RI +
Sbjct: 220 LGSGATMIASYLTNRSSIGFEIES-CDDIVKHRIEYEKKYH 259
>gi|120601920|ref|YP_966320.1| nuclease [Desulfovibrio vulgaris DP4]
gi|120562149|gb|ABM27893.1| ParB domain protein nuclease [Desulfovibrio vulgaris DP4]
Length = 684
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 8/156 (5%)
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA-HETLIWASPSPKAKGYTFNY 168
NI + + D + N F G+ + + L + + +
Sbjct: 520 NIHPGIMQIPMPSTGEDFDWITITGNDAAPFSGKVYSMDVDKDLHYVADGLVTHNCWYAV 579
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ D + + W I + +D E +H TQKP + R + +++ PG +
Sbjct: 580 KGQAHWSGDRKQVTVWNIAS-------KGQDAETIHGTQKPVECMKRPMENNSSPGQAVY 632
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+PF GSGT+ A+ R +E+ Y+D+A R
Sbjct: 633 EPFSGSGTTIMAAELTGRCCYAMELNPAYVDVAVTR 668
>gi|308064145|gb|ADO06032.1| adenine-specific DNA methylase [Helicobacter pylori Sat464]
Length = 348
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG---SERLRNKDGEKL 203
N H S YD +K A + ++ R+ + + E L +G KL
Sbjct: 110 NEHIFWQENSKGRLIPYEVIYYDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKL 169
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
T KPEALL RI+ ST+ D++LD F GSGT+ AVA KL+R +IGIEM + + +
Sbjct: 170 FDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILP 229
Query: 264 RIAS 267
R+
Sbjct: 230 RLKK 233
>gi|218513326|ref|ZP_03510166.1| DNA methylase N-4/N-6 domain-containing protein [Rhizobium etli
8C-3]
Length = 321
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKL------HPTQKPEALLSRILVSSTKPGDIILD 229
V R+ W ++ + KL PT KPE LL RIL +T PGD+ILD
Sbjct: 223 GGVVPRTWWPADEAGHNQEAKRDHLNKLLRGIEPFPTPKPERLLHRILTIATNPGDLILD 282
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
F GSGT+GAVA K+ R +I +E+ + R+
Sbjct: 283 SFAGSGTTGAVAHKMGRRWIMVELGEHCHTHIIPRLKK 320
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 17/140 (12%)
Query: 31 VLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ L + +F DPPYN S + D + R
Sbjct: 3 ALKALEQEFTGKIKCVFIDPPYNTG----------SAFEHYHD----GVEHSIWLGLMRD 48
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L R+L NG+LW+ + M + F +
Sbjct: 49 RLEIIWRLLAENGSLWITLDDNESHYFKVMADEIFGRRNYVASVVWEKDKGRRSDTIFSS 108
Query: 148 AHETLIWASPSPKAKGYTFN 167
AH+ ++ + +P + N
Sbjct: 109 AHDYILIYAKNPTIWADSRN 128
>gi|68536318|ref|YP_251023.1| putative DNA restriction-modification system, DNA methylase
[Corynebacterium jeikeium K411]
gi|260579016|ref|ZP_05846918.1| DNA restriction-modification system, DNA methylase [Corynebacterium
jeikeium ATCC 43734]
gi|68263917|emb|CAI37405.1| putative DNA restriction-modification system, DNA methylase
[Corynebacterium jeikeium K411]
gi|258602881|gb|EEW16156.1| DNA restriction-modification system, DNA methylase [Corynebacterium
jeikeium ATCC 43734]
Length = 671
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 185 LIPICSGSERLRNKDGEKLHP------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ G R + L P T KPE LL RI+ +T PGDI+LD F GSGT+
Sbjct: 376 WLHEEVGHNRTSKAEMNALFPNTAAFATPKPERLLERIIHIATNPGDIVLDVFAGSGTTA 435
Query: 239 AVAKKLRRSFIGIEMKQDYID-IATKRIASVQPLGNIELTVLTGKRTE 285
AVA+K+ R ++ E+ +D + R+ V + + +
Sbjct: 436 AVAQKMGRRWVTCELVEDTFNRFTRPRLEKVINNEDQGGITVQKEERA 483
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 24/152 (15%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V I+ DPP+N Y +
Sbjct: 75 NLLILGESGDVLEALTRIPEWSKKYVGKVKCIYIDPPFNTAQTFANYEDN---------- 124
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
+ R LL R +L +G++WV R+ +L
Sbjct: 125 ----LEHSVWLTMMRDRLLHLRDLLSEDGSIWVHLDDVENHRMRVLLDEVFGSGNFVAEA 180
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ P F + +I S SP +
Sbjct: 181 IWQKAYSPRNDALAFSVDQDVIIVYSKSPGWQ 212
>gi|260494584|ref|ZP_05814714.1| site-specific DNA-methyltransferase [Fusobacterium sp. 3_1_33]
gi|260197746|gb|EEW95263.1| site-specific DNA-methyltransferase [Fusobacterium sp. 3_1_33]
Length = 700
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 22/174 (12%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLN------GQLYR 59
I ++ + ++ I+G+++ VL+ L + +I+ DPPYN + ++ +
Sbjct: 81 IEKDSVNPDSTENLYIEGDNLEVLKLLRQNYRGAIKMIYIDPPYNTGNDFVYNDNFKISQ 140
Query: 60 PDHSLVDAVTDS---------WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ D D + L R +L +G +++ +
Sbjct: 141 KESDKKQGYIDENNQRLQKNSKDSNRFHANWLTMMYPRLKIARDLLSEDGVIFIHIDDNE 200
Query: 111 IFRIGT----MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ IG + NF + I + + G+ ++ E + +
Sbjct: 201 MENIGKVCNDIFGEENFINIITIKTKIGGVSGSSEGKSLKDVTEFIWAFCKNKN 254
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/208 (14%), Positives = 65/208 (31%), Gaps = 15/208 (7%)
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
L R + + ++ + + S +Y + + + +
Sbjct: 296 LKRDEKNDMNFYGYNILETQSIFSYAKEHKISIEEVYNKFADK-------IFRTTNAQSS 348
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ Q + N S +G+ E L + + + + +
Sbjct: 349 IRQKVIKETKNYKYPIFSCEYIPIKGKNLGQKIEILYKSGSTSEQRNMVMFLSDVVTKEN 408
Query: 177 DVQMRSDWLIPICSGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
D + + E L + + +KP LL R++ ST DI+LD F GS
Sbjct: 409 GEYFYLDKITSLWDDIEYNNLTKEGNIEFQNGKKPVKLLQRLINLSTNNNDIVLDFFSGS 468
Query: 235 GTSGAVAKK------LRRSFIGIEMKQD 256
++ + R FI +++ +
Sbjct: 469 ASTAHAVMQLNAEDGGNRKFIMVQIDEK 496
>gi|297380018|gb|ADI34905.1| Modification methylase [Helicobacter pylori v225d]
Length = 359
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 47/76 (61%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E L +G KL T KPEALL RI+ ST+ D++LD F GSGT+ AVA K +R +IGI
Sbjct: 169 KEILALFNGTKLFDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAVAHKFKRKYIGI 228
Query: 252 EMKQDYIDIATKRIAS 267
EM + + + R+
Sbjct: 229 EMGEHFDSVILPRLKK 244
>gi|224437467|ref|ZP_03658429.1| DNA methylase N-4/N-6 domain protein [Helicobacter cinaedi CCUG
18818]
Length = 169
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDII 227
A K ++ S + N + +K HP P L R + + GD++
Sbjct: 58 AWKKKHKGESDISKEEFMAWTNGLWSFNGESKKRIGHPAPFPRELPKRCIKLFSYVGDVV 117
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
DPF GSGT+ + R FIGIE+ ++Y +++ KR
Sbjct: 118 FDPFCGSGTTMIESYLNNRQFIGIELDREYCELSKKRF 155
>gi|308389493|gb|ADO31813.1| putative type III restriction/modification methylase [Neisseria
meningitidis alpha710]
Length = 723
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 437 YENLGYNFILPIANKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 491
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 492 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 549
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 550 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 589
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 21/212 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPP-YNLQLNGQLYR 59
K ++ + + ++ IIKGN++ L L V LI+ DPP Y ++ Q
Sbjct: 198 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYYFVKKKQQDSF 257
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
++ + F + L + +L +G + + + +L
Sbjct: 258 GYNTNFK-----------LSTWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLD 306
Query: 120 --NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA--- 174
+ ++ + N TL++A K+ Y F D
Sbjct: 307 EIFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKW 366
Query: 175 -NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 367 EEDEIGFYKKGAPMRATGTEDKREDRPEMFYP 398
>gi|227875281|ref|ZP_03993423.1| possible DNA restriction-modification system, DNA methylase
[Mobiluncus mulieris ATCC 35243]
gi|227844186|gb|EEJ54353.1| possible DNA restriction-modification system, DNA methylase
[Mobiluncus mulieris ATCC 35243]
Length = 290
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID-IAT 262
T KPE LL RI+ + PGDI+LD F GSGT+ AVA+K+ R ++ E+ D +
Sbjct: 4 FTTPKPERLLERIIHIGSNPGDIVLDCFAGSGTTAAVAQKMGRRWVTCELVADTFERFTK 63
Query: 263 KRIASVQPLGNIELTVLTGK 282
R+ V + T K
Sbjct: 64 PRLMKVINDQDPGGVTYTKK 83
>gi|291043622|ref|ZP_06569338.1| twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
DGI2]
gi|291012085|gb|EFE04074.1| twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
DGI2]
Length = 201
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ L L V LI+ DPPYN + +
Sbjct: 32 KQPVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTETDSF---- 87
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
A D + S + F + L + +LK +G ++V + +L
Sbjct: 88 ------AYNDKF----SHSTWLTFMKNRLEIAKELLKDDGLIFVQCDDKEQAYLKVLLDE 137
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQN 147
P+ +
Sbjct: 138 TFTRENFINCIAVKMSEPSGNKMAHTS 164
>gi|302337974|ref|YP_003803180.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
11293]
gi|301635159|gb|ADK80586.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
11293]
Length = 314
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 76/245 (31%), Gaps = 34/245 (13%)
Query: 46 DPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
DPPYN+ V + +Y F+R W+ A L + ++
Sbjct: 66 DPPYNV------------EVGGMQSDALSRLEITSYIDFSRRWIEAALPALAKDAYFYIW 113
Query: 106 G------SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
S+ + + +++ + ++ L+
Sbjct: 114 IGADQKRSFQPLPEVMMLMRGFPELAAKSFITLRNQRGYGTLSNWMSVRQ-ELLCYVKGK 172
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER---------------LRNKDGEKLH 204
+ K A ++ + G R ++
Sbjct: 173 PGFTVQYTNQPKKVAGYYKKVGGVRKENLARGRSHTLRAGNVWTDIQQVFYRMEENVPGA 232
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
QKP A L RI+ S ++ G+++ D F SGT+ A+ L R ++ + ++ +R
Sbjct: 233 YAQKPLAALRRIISSGSRSGEVVADFFAHSGTTLLAAEILERRCFTCDIDPVFAELTIRR 292
Query: 265 IASVQ 269
+ +
Sbjct: 293 LERFR 297
>gi|4321654|gb|AAD15792.1| modification methylase LlaFI [Lactococcus lactis]
Length = 680
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 22/171 (12%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ + IIKGN++ L L V I+ DPPYN + Y
Sbjct: 166 TEFSDEDNLIIKGNNLLALHSLKKRYAGKVQCIYIDPPYNTGNDSFKYN----------- 214
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
D+F + + F R L + +L G ++V + + +L ++
Sbjct: 215 --DRF-NHSTWLTFMRNRLEIAKELLSEEGLIFVQCDDNQQAYLKVLLDSIFSKENFMSN 271
Query: 131 WRKSNPMPNFRGRRFQNA-----HETLIWASPSPKAKGYTFNYDALKAANE 176
+ N E ++ + ++ T +E
Sbjct: 272 IVIKMSEASGVKMSHANKRLPKLKEYILSYKKNSNSEINTLKVKKKYWDSE 322
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+KPE ++ RI+ +T D +LD F GS T+ AVA K+ R FIGIE ++ R
Sbjct: 480 NAKKPEEIIKRIITIATNTNDTVLDFFMGSATTQAVAMKMNRRFIGIEQMDYINTVSVPR 539
Query: 265 IAS 267
+
Sbjct: 540 LQK 542
>gi|153806916|ref|ZP_01959584.1| hypothetical protein BACCAC_01192 [Bacteroides caccae ATCC 43185]
gi|149131593|gb|EDM22799.1| hypothetical protein BACCAC_01192 [Bacteroides caccae ATCC 43185]
Length = 250
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 76/258 (29%), Gaps = 43/258 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-----------DS 71
+ + + L+K P DL DPPY + + +P+
Sbjct: 6 VYNIDRMDFLKKFPDNFFDLFIDDPPYGIGADNPSIKPNTVKQSNGNILYVKQSVYPKSD 65
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
WD Y +R + N +W + ++ F G ++ + +
Sbjct: 66 WDSRVPPPEY-------FDEVKR-VSRNQIIWGVNYFNYDFTGGRIVWDKLNGDTDQYDC 117
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ N R +I + K K NE
Sbjct: 118 EIAYCSMNNRTDLVYCMWRGMIQGTYCGKDLSKAIIQQGNKKLNE--------------- 162
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+++HP QKP L + +L PG I D GS +S A KLR + G
Sbjct: 163 ---------KRIHPCQKPVILYAWLLNQYANPGYKIGDAHMGSQSSRIAAYKLRFDYWGC 213
Query: 252 EMKQDYIDIATKRIASVQ 269
E + + R
Sbjct: 214 EKDKFHFKEGNSRFRYEC 231
>gi|300772254|ref|ZP_07082124.1| DNA (cytosine-5-)-methyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300760557|gb|EFK57383.1| DNA (cytosine-5-)-methyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 216
Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 47/255 (18%), Positives = 81/255 (31%), Gaps = 48/255 (18%)
Query: 16 IFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ DK I +++ ++ + P K DL DPPY + PD D +
Sbjct: 1 MMNLTDKLTITNEDNMVMMSRYPEKYFDLAIVDPPYGIG-------PDWKKRKNTADKYK 53
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
GSY N N + + +
Sbjct: 54 --------------------------------GSYQNESIPDEKYFNELIRVSKNWIVW- 80
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N+ + F + ++W ++ + + +++ + G+
Sbjct: 81 ---GWNYYTQFFPPTNYLIVWDKKMSDKTSFSSQVEIAATS---IKIPAAIYRHSWDGAR 134
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ +K+HP QKP AL +L KPG I+D FGSG+ E+
Sbjct: 135 KESETGIDKIHPHQKPVALYKWLLDKYAKPGYKIIDTHFGSGSIAIACHDYGYELTACEL 194
Query: 254 KQDYIDIATKRIASV 268
Q+Y A RI
Sbjct: 195 DQEYYQSAIDRIRRH 209
>gi|30250236|ref|NP_842306.1| adenine specific DNA methylase Mod [Nitrosomonas europaea ATCC
19718]
gi|30181031|emb|CAD86221.1| Adenine specific DNA methylase Mod [Nitrosomonas europaea ATCC
19718]
Length = 567
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKD-----GEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + + W ++ + + + T KPE LL RIL +T PGD++LD
Sbjct: 278 DGMTPHNWWSHEEVGHTDESKKEMIGLYGPRDVFDTPKPERLLKRILEIATNPGDLVLDS 337
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
F GSGT+GAVA K+ R +I +E+ + R+ V +
Sbjct: 338 FAGSGTTGAVAHKMGRRWIMVELGEHCHTHIIPRLKKVIDGED 380
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 18/158 (11%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
+ S + + + +++I G+++ L+ L A V +F DPPYN
Sbjct: 30 EKSYHAKQRVSESDVFDNRLIFGDNLLALKALEQEFAGEVKCVFIDPPYNTGSAFT---- 85
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ- 119
+D + R L +R+L +G+LW+ + + +
Sbjct: 86 ----------HYDDGLEHSIWLGLMRDRLEIIKRLLSNDGSLWITIDDNECHYLKVLCDE 135
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + + + + + ++ S
Sbjct: 136 IFGRANYKTTITWQRKYSVSNNFQGIASICDFVLVYSK 173
>gi|15828951|ref|NP_326311.1| type III restriction-modification system: methylase [Mycoplasma
pulmonis UAB CTIP]
gi|14089894|emb|CAC13653.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
pulmonis]
Length = 587
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 23/219 (10%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKL------------PAKSVDLIFADPPYNL---QLNGQL 57
QN I E +++I G + L+ L A ++I+ DPPYN + +G
Sbjct: 82 QNDILEQDNQLIIGENYDALKNLIVIERERERERDQANKYNIIYIDPPYNTEATKTDGNT 141
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
D + T + S + F L R++L +G ++V + + +
Sbjct: 142 IANDKEDIKNDTFQYRDRFSRNGWLNFMNEILTLARKLLSDDGIIFVSIDDNEQAYLKVL 201
Query: 118 LQNLNFW-----ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS---PKAKGYTFNYD 169
+ + + + N + HE + + + Y +
Sbjct: 202 MDEIFGEENFISTIKWRKTNSPSGNTNQNKKFVNIQHEYIHLYAKDKGEINSLNYYKYDE 261
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
N+ D + G +L + K
Sbjct: 262 EDFEKNQYKFRDKDEQLFQQRGYYKLTPLIRNNSGSSFK 300
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 23/190 (12%)
Query: 98 PNGTLWVIGSYHNI-FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
P+GT + IG N+ + ++ + + + F AH +
Sbjct: 312 PDGTFFKIGQNMNVKNAVDKSCYTWSYDTFLEGKKQGFIVIKKNNKNGFWEAHRKVYSNV 371
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL------------- 203
+ N D S+ + +E++
Sbjct: 372 IFNPKTRKVETQEKGLEYN-DYFDLSNKSNKKDTFNEKIDYYHESTTQSSANDLKQIGIF 430
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDY 257
KP L+ ++ ILD F GSGT+G L R F + ++
Sbjct: 431 FKFSKPYKLIKHLINLYPNKDAKILDFFAGSGTTGHAVLDLNREDGGKRTFTLVTNNENN 490
Query: 258 I--DIATKRI 265
I +I +R+
Sbjct: 491 IASEITYERL 500
>gi|331090152|ref|ZP_08339040.1| hypothetical protein HMPREF1025_02623 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330402098|gb|EGG81670.1| hypothetical protein HMPREF1025_02623 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 537
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ +I G+++ L+ L A + I+ DPPYN + Y D
Sbjct: 39 ENMLIHGDNLIALQALQQDFAGRIKCIYIDPPYNTGSAFEYY--------------DDNL 84
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + + L+ R +L +G L + +L +
Sbjct: 85 EHSIWLSLMKQRLILLRELLSDDGFLCCHIDDSESHYVKVLLDEIFGRSNYLTTLYVRVR 144
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
P+ + + H+ + + G T N+D E
Sbjct: 145 YPDKTLKSDMDFHKEIEQVLVYRRNYGATPNFDHDDVGYE 184
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R++ G + +KPEAL+ I+ + GD +LD F GSG++ A A K+ R ++G+E+
Sbjct: 325 RHEGGVEFRSGKKPEALIEMIIRYFSNKGDWVLDSFLGSGSTIATAHKMGRKWVGVELGD 384
Query: 256 DYIDIATKRIASVQPLGNIELT 277
+ R+ +V ++
Sbjct: 385 HAYTLCKVRMDNVINGDKTGIS 406
>gi|254436061|ref|ZP_05049568.1| DNA methylase [Nitrosococcus oceani AFC27]
gi|207089172|gb|EDZ66444.1| DNA methylase [Nitrosococcus oceani AFC27]
Length = 256
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 30/246 (12%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
+++E ++ F+ K IK + + L +L SV F DP Y + +L +
Sbjct: 33 SVSEKKSIPFDRK---IKMDGLKFLGRLVDNSVPAAFFDPQY-RGVMDKLKYGNEGSRQQ 88
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
+ + ++ RVL P+G L++ ++ + +
Sbjct: 89 LRAQMKQMPE-----ETIFDFVSEIARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPMKTV 143
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
D++ + G R + E L+ A P + ++ ++ R
Sbjct: 144 DLITWDKERIG--MGYRSRRKAEYLLVAQKKPVRAKGVWTNHSIPDVYQEKFQRDMSF-- 199
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
HP KP L ++++ + T GD+++DP GS + A A++ R
Sbjct: 200 ---------------AHP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQTGRK 242
Query: 248 FIGIEM 253
F+G ++
Sbjct: 243 FLGCDI 248
>gi|29565978|ref|NP_817549.1| gp100 [Mycobacterium phage Cjw1]
gi|29424703|gb|AAN01714.1| gp100 [Mycobacterium phage Cjw1]
Length = 187
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I G+ +L +L SVD I DPPY L G+ WD
Sbjct: 21 LIHLGDCRDILAELEDASVDSIVTDPPYELGFMGK--------------KWDGSG----- 61
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AF C RVLKP G L G R+ +++ F I + I W + P
Sbjct: 62 IAFDVEMWEQCLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGFP 118
>gi|319641265|ref|ZP_07995964.1| methyltransferase [Bacteroides sp. 3_1_40A]
gi|317387138|gb|EFV68018.1| methyltransferase [Bacteroides sp. 3_1_40A]
Length = 593
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 25/213 (11%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+G+++ L L ++D+I+ DPPYN +Y D DS D +
Sbjct: 74 HILIEGDNLEALTALAYTHEGNIDVIYIDPPYNTGNKDFVY------NDKFVDSEDSYR- 126
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ +F L +++L G +++ + ++ + L + +
Sbjct: 127 HSKWLSFMNKRLRIAKQLLSDKGVIFISIDDNEHAQLKLLCDEVFGLNNLCGNIIWRKKS 186
Query: 137 MPNFRGRRFQNAHETLIWASPSP-------------KAKGYTFNYDALKAANEDVQMRSD 183
F HE ++ + Y K + S
Sbjct: 187 GGGQTDAFFVTEHEYILVYRKTDQFIWQDETVAISEDTFKYMDERGRYKITPLEKWGSSA 246
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
S +++ DG+ P P+ L R
Sbjct: 247 HREDRPSMYFAIKSPDGKDYFPVA-PDGLPGRW 278
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMK 254
+ + KP L+ ++ S ILD F GSGT+ +L R I +
Sbjct: 343 KDIFGNPKPLNLVKDLI-SHNNRDSTILDFFAGSGTTLHATMQLNAEDGGHRKCILVTNN 401
Query: 255 QDYI 258
++ I
Sbjct: 402 ENNI 405
>gi|323340597|ref|ZP_08080850.1| methylase [Lactobacillus ruminis ATCC 25644]
gi|323091970|gb|EFZ34589.1| methylase [Lactobacillus ruminis ATCC 25644]
Length = 654
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 90/284 (31%), Gaps = 49/284 (17%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
Q+S+ + + +IKGN++ L + A V +I+ DPPYN +
Sbjct: 172 QSSLSDDDNLVIKGNNLIALHSIKRRYAGKVKMIYIDPPYNTGSDSF----------EYN 221
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY--HNIFRIGTMLQNLNFWILN 127
D + + + F + L R +L +G ++V N I IL
Sbjct: 222 DHFKR----STWLTFMKNRLEIARELLSKDGLIFVNIDSSRSNCKSIKGTTMEPYLHILM 277
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
D ++ N TL W + ++ +
Sbjct: 278 DNIF------------GESNYIGTLDWKKKKQPSFLSRIASVLDHIIVFAKDEKNIDKLS 325
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL---DPFFGSGTSGA---VA 241
I + ++ + D + K E L+ + K D+++ + S + V
Sbjct: 326 ISTTTDNTKRIDNQ---SNPKSERLVKAGVKYMGKENDLVIKAGEYTSRSMSVTYDRDVV 382
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS---VQPLGNIELTVLTGK 282
K R+ + + A R Q + L + + K
Sbjct: 383 IKNGRTVSDVVI------TANWRTNQSNIDQYCNDDLLYINSSK 420
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G+ L G+K+ T KPE LL ++ + + G+I+LD F GS T+ AVA K+ R FIG
Sbjct: 450 GTNELIALFGKKVFDTPKPEKLLCHLIKAGSNKGNIVLDFFMGSATTQAVAMKMGRRFIG 509
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ-ILTNAQ 309
IE I+ R+ V ++ + V L++ Q L + Q
Sbjct: 510 IEQMDYIETISVPRLQKVIEGEQGGIS-----KDVGWQGGGSFVYAELMEKNQGYLHDLQ 564
Query: 310 GNISAT 315
+
Sbjct: 565 KATNVK 570
>gi|197284843|ref|YP_002150715.1| phage DNA adenine-methylase [Proteus mirabilis HI4320]
gi|194682330|emb|CAR42127.1| phage DNA adenine-methylase [Proteus mirabilis HI4320]
Length = 340
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ +++++L+ LP +DLI DPPY A + WD + EAY
Sbjct: 2 QLYNNDALAILKTLPDNYIDLIATDPPYF-----------RVKSCAWDNQWD---NVEAY 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS 107
++ L+ RVLKPNG+L++
Sbjct: 48 LSWFDEVLVEFWRVLKPNGSLYLFCG 73
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
H +KP A++ I+ SS++ GD++ D F GSG + A KL R +G+E++++ + +
Sbjct: 273 HLCEKPSAMMEHIIRSSSREGDLVADFFMGSGATLKAALKLNRKVLGVELEKERFEQTEQ 332
Query: 264 RIA 266
I
Sbjct: 333 EIK 335
>gi|317134067|ref|YP_004089978.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
gi|315450529|gb|ADU24092.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
Length = 317
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/251 (19%), Positives = 80/251 (31%), Gaps = 28/251 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I+G+ L S D I D P D SF Y+
Sbjct: 73 LIEGDGRD-LSVFSNDSFDCIITDHP----------WSDEKANKGGN------RSFADYE 115
Query: 83 AF--TRAWLLACRRVLKPNGTLWVIG------SYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F T RVLK L + +Y +++I M + F + W K
Sbjct: 116 TFRYTPDDFKEKARVLKDGCFLVEMIPAENESNYEYLYQIKKMAEAAGFQYYAKVPWTKG 175
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ N + + + + A S + +
Sbjct: 176 TFVGNTGRKAKNQEDMMIFSLGKARSMRPDAKKDKADPTV---KHYMSGANGMLPTNFNV 232
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
++H +KP L+ +IL T G+I+LD F GSG G +R + IE
Sbjct: 233 QPPDKKSRIHQAEKPMGLVEQILDYLTFEGEIVLDQFAGSGVVGEACINKKRGCVLIEKS 292
Query: 255 QDYIDIATKRI 265
++ I +R+
Sbjct: 293 KECIKKIIQRL 303
>gi|237508020|ref|ZP_04520735.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
MSHR346]
gi|235000225|gb|EEP49649.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
MSHR346]
Length = 378
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H PEAL+ +++ ++PGD++ DPFFGSGT+G VA++L R FIG E+ DY +
Sbjct: 306 AHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGRRFIGCELNPDYEPLQR 365
Query: 263 KRIAS 267
R+
Sbjct: 366 DRLRQ 370
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 74/240 (30%), Gaps = 59/240 (24%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
W D+ +G+ ++ + A V I PPY + Y PD
Sbjct: 1 MNWLDQSHRGDCRDLMRAMIADGVRVQTIVTSPPYW---GLRSYLPDGHPDKG--REIGS 55
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-----------------------HNI 111
S+ + CR++L +GTLW+ NI
Sbjct: 56 ESTLREFIDTLVGVFELCRQLLVDDGTLWLNMGDAYASSGGQTPMRGETFAGRARAKENI 115
Query: 112 ---------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+R+ LQ+ +++ DI+W K NPMP R AHE
Sbjct: 116 CLSNRKAGIDGLKVKDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHE 175
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI------CSGSERLRNKDGEKLH 204
L S S + Y + + + RS +G E R K G +
Sbjct: 176 YLFLLSKSE--RYYYDFHAMQEPVSGGAHARSPGNRSHKATNAFAAGDEHHRTKSGLVAY 233
>gi|167621143|ref|ZP_02389774.1| putative modification methylase [Burkholderia thailandensis Bt4]
Length = 963
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 23/163 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W++++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 161 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNTAH 220
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R ++ R +L +G+++V N+ R+ +
Sbjct: 221 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRVIVFRDLLNESGSVFVQIGVENVHRVRAV 278
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
L + L +A K
Sbjct: 279 LDEVFGESNFVAQIAFRTTTGKASAAIDTTQDFILWFAKDLQK 321
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
R KL+ Q ++ R ++ ++ PGD++LDP GSGT+ V+++
Sbjct: 429 HADIWDDTRQSGFGDAKLYVVQTATTVIERCILMASDPGDLVLDPTCGSGTTAYVSEQHA 488
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R +I I+ + + +A RI
Sbjct: 489 RRWITIDTSRVALALARARI 508
>gi|17975218|ref|NP_536413.1| putative DNA cytosine methylase [Burkholderia phage phiE125]
gi|17484079|gb|AAL40330.1|AF447491_58 gp56 [Burkholderia phage phiE125]
Length = 378
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H PEAL+ +++ ++PGD++ DPFFGSGT+G VA++L R FIG E+ DY +
Sbjct: 306 AHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGRRFIGCELNPDYEPLQR 365
Query: 263 KRIAS 267
R+
Sbjct: 366 DRLRQ 370
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 73/240 (30%), Gaps = 59/240 (24%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+W D+ +G+ ++ + A V I PPY + Y PD +
Sbjct: 1 MDWLDRSHRGDCRDLMRAMAADGVRVQTIVTSPPYW---GLRSYLPDGHPDKH--REIGQ 55
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-----------------------HNI 111
+ + R +L +GTLW+ NI
Sbjct: 56 EPTLREFINTLVGVFDLARALLADDGTLWLNMGDAYASSGGQTPMRGETFAGRARAKENI 115
Query: 112 ---------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+R+ LQ+ +++ DI+W K NPMP R AHE
Sbjct: 116 CLSNRKAGIDGLKVKDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHE 175
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI------CSGSERLRNKDGEKLH 204
L S S + Y + + + RS +G E R K G +
Sbjct: 176 YLFLLSKSE--RYYYDFHAMQEPVSGGAHARSPGNRSHKATNAFAAGDEHHRTKSGLVAY 233
>gi|83716880|ref|YP_439226.1| gp56 [Burkholderia thailandensis E264]
gi|257142349|ref|ZP_05590611.1| gp56 [Burkholderia thailandensis E264]
gi|83650705|gb|ABC34769.1| gp56 [Burkholderia thailandensis E264]
Length = 378
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H PEAL+ +++ ++PGD++ DPFFGSGT+G VA++L R FIG E+ DY +
Sbjct: 306 AHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGRRFIGCELNPDYEPLQR 365
Query: 263 KRIAS 267
R+
Sbjct: 366 DRLRQ 370
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 71/240 (29%), Gaps = 59/240 (24%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
W D+ +G+ ++ + A V I PPY + Y PD
Sbjct: 1 MNWLDRSHRGDCRDLMRAMIADGVKVQTIVTSPPYW---GLRSYLPDGHPDKH--REIGS 55
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-----------------------HNI 111
+ + R +L +GTLW+ NI
Sbjct: 56 EPTLREFINTLVGVFDLARALLADDGTLWLNMGDAYASSGGQTPMRGETFAGRARAKENI 115
Query: 112 ---------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+R+ LQ+ +++ DI+W K NPMP R AHE
Sbjct: 116 CLSNRKAGIDGLKVKDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHE 175
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI------CSGSERLRNKDGEKLH 204
L S S + Y + + + RS +G E R K G +
Sbjct: 176 YLFLLSKSE--RYYYDFHAMQEPVSGGAHARSPGNRSHKATNAFAAGDEHHRTKSGLVAY 233
>gi|328463318|gb|EGF35006.1| adenine-specific DNA-methyltransferase [Lactobacillus helveticus
MTCC 5463]
Length = 520
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS 63
+A + E K+ ++G+++ VL+ L + + +++ DPPYN + +
Sbjct: 53 IADKDKSQDWDETKNVYVEGDNLEVLKLLQKAYSEKIKMVYIDPPYNRGHDFIYKDNFTN 112
Query: 64 LVDAVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ + + L R +L+ +G +++
Sbjct: 113 SYNNYLKETGQIDENGQKTTTSPESNGRFHTDWLNMMYPRLKLARNLLRDDGVIFISIDD 172
Query: 109 HNIFRIGTML 118
+ + +
Sbjct: 173 NEAVNLRKIC 182
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ +D G +++ G+ + K AL+ +++ T I+LD F GS T+
Sbjct: 352 KTLWNDKEYNNDYGKRAIKDLFGKNIMSFPKSPALIKKMIDIGTDNDSIVLDFFSGSATT 411
Query: 238 GAVAKKLR------RSFIGIEM 253
+ R FI I++
Sbjct: 412 AQAVLEKNVEDNGKRKFIMIQL 433
>gi|193215938|ref|YP_001997137.1| DNA methylase N-4/N-6 domain-containing protein [Chloroherpeton
thalassium ATCC 35110]
gi|193089415|gb|ACF14690.1| DNA methylase N-4/N-6 domain protein [Chloroherpeton thalassium
ATCC 35110]
Length = 328
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-DVQMRSDWLIPICSGSERLRNKDG 200
G N T I + G+ + AAN + SD + + +
Sbjct: 192 GTGALNIENTRIPYAKGETKVGHNPHPKGRVAANIIRTEPFSDEYDKFFVIPKVRQKAEE 251
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
HPT KP L+ ++ + +LDPF GSG++G L+R FIG E+ + Y +I
Sbjct: 252 FNDHPTLKPVELMHHLVKLVSFENQTVLDPFMGSGSTGVACLTLKRKFIGYELDERYYEI 311
Query: 261 ATKRIASVQPLGNIELT 277
KRI + + + L
Sbjct: 312 CKKRIDAQKIINESLLF 328
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 63/196 (32%), Gaps = 24/196 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I + L +L S+D + DPPY + WDK D
Sbjct: 8 IYNKSCY-GLGELKDNSIDAMVTDPPYGISYQNNY--------------WDK-------D 45
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ +VLKP V S + R+ L++ F I + + W N MP R
Sbjct: 46 LPDKKIWEDSVKVLKPGSFGLVFSSVRLMHRLMVALEDAGFLIKDVMFWSYLNGMPKSR- 104
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
+ + L S Y Y A N + + P + + G
Sbjct: 105 DVALDIDKELGSESKVVGKYNYVQGYKKNGAENYYAENKKLKYEPTSELGVQYKG-SGLG 163
Query: 203 LHPTQKPEALLSRILV 218
+ P +P L+ + L
Sbjct: 164 IKPAYEPVILIQKPLE 179
>gi|307307475|ref|ZP_07587209.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica BA175]
gi|306910150|gb|EFN40584.1| DNA methylase N-4/N-6 domain protein [Shewanella baltica BA175]
Length = 356
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 83/236 (35%), Gaps = 8/236 (3%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+N+ + +P+ D K S + ++ ++ N G +
Sbjct: 115 FNILSHVVWTKPNEPGFDGWKGKMKK-ESLRQWYG-HSERIIFAEPAIEGNLHRSPFGEF 172
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
R + L L + ++ + + T
Sbjct: 173 LREVRKKSGLSGHQLTELTGAYGKVNHGGA-VSNWEAGRNTPSRDQYKKICEVILGTGKV 231
Query: 169 DALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
D + + ++ M +R G+ HP +KP +L + + + GD
Sbjct: 232 DHMPPYEDIIRVFKMDGTKEFTDVWNFPSVRPYKGK--HPAEKPLDMLKHAIEACSHEGD 289
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
I+LD F GSG++ A L R + IE+++ +++ ++R+ +++ L +L L
Sbjct: 290 IVLDCFAGSGSTAVAALSLGRRSVSIEIEEPWVEGISERLKAIEKLDEEDLANLEK 345
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
Query: 20 KDKII-KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
K+ I+ G+S+ +L K+P S+ LI DPPY+ +Y F+
Sbjct: 24 KNAILAHGDSLELLRKIPDNSISLILTDPPYHATKKKNIYGDT------------LFAQD 71
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ Y + + + RRVLK NG+L+ R+ + + + + + + P
Sbjct: 72 QHYLEWMNEYAIEWRRVLKQNGSLFCYCDSSMSARLEVLFSVEFNILSHVVWTKPNEPGF 131
Query: 139 -NFRGRRFQNAHETLIWAS 156
++G+ + + S
Sbjct: 132 DGWKGKMKKESLRQWYGHS 150
>gi|297627292|ref|YP_003689055.1| DNA methylase ( site-specific DNA-methyltransferase
adenine-specific, type III restriction-modification
system) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296923057|emb|CBL57641.1| DNA methylase ( site-specific DNA-methyltransferase
adenine-specific, Putative type III
restriction-modification system) [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 666
Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 28/200 (14%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V LI+ DPP+N Y +
Sbjct: 74 NLLILGESGDVLEALTRVPELAEKYVGKVRLIYIDPPFNTAQTFASYEDN---------- 123
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIV 130
+ R LL +++L +G++WV + R+ ++ V
Sbjct: 124 ----LEHSIWLTMMRDRLLHMKKLLTDDGSIWVHLDNVEVHRMRLLMDAIFGPGNFLAEV 179
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ P + F + H+T++ S A N + I
Sbjct: 180 VWQKADSPRGDAQGFSSDHDTILVYGRSSTPHLNRMARTASD--NSRFSNPDNDPQGIWF 237
Query: 191 GSERL--RNKDGEKLHPTQK 208
R N K HP+
Sbjct: 238 SDNRSAPANIGNRKQHPSTF 257
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKD------GEKLHPTQKPEALLSRILVSSTKPGDI 226
E Q W G R + G T KPE LL R++ + PGDI
Sbjct: 359 YPPEQGQPPRTWWDNEEVGHNRQAKAEQKALSTGGTTFSTPKPERLLERVIHIGSDPGDI 418
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI-ATKRIASVQPLGN 273
+LD F GSGT+ AVA+K+ R ++ E+ + R+A V +
Sbjct: 419 VLDVFAGSGTTAAVAQKMGRRWLTCELLESTFSTFTRPRLAKVVNDQD 466
>gi|167560981|ref|ZP_02353897.1| putative modification methylase [Burkholderia oklahomensis EO147]
Length = 963
Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 23/163 (14%)
Query: 19 WKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSL--------- 64
W++++I G+S+ V+ L V I+ DPPY ++ N S
Sbjct: 161 WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNTAH 220
Query: 65 -------VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
V A D+W +Y + R ++ R +L +G+++V N+ R+ +
Sbjct: 221 ITREPEQVKAFRDTWR--DGIHSYLTYLRDRVIVFRDLLNESGSVFVQIGVENVHRVRAV 278
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
L + L +A K
Sbjct: 279 LDEVFGESNFVAQIAFRTTTGKASAAIDTTQDFILWFAKDLQK 321
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
R KL+ Q ++ R ++ ++ PGD++LDP GSGT+ V+++
Sbjct: 429 HADIWDDTRQSGFGDAKLYVVQTATTVIERCILMASDPGDLVLDPTCGSGTTAYVSEQHA 488
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R +I I+ + + +A RI
Sbjct: 489 RRWITIDTSRVALALARARI 508
>gi|229125143|ref|ZP_04254294.1| hypothetical protein bcere0016_54070 [Bacillus cereus 95/8201]
gi|228658310|gb|EEL13999.1| hypothetical protein bcere0016_54070 [Bacillus cereus 95/8201]
Length = 181
Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 21/189 (11%)
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
E++ F + V +P ++V + L++ + + I+W K++
Sbjct: 1 MDDESFYEFLLTAYINMLEVSRPGAAIYVCHADSEGINFRKGLKDAGWLLKQCIIWAKNS 60
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + HE +++ A + + D +R
Sbjct: 61 FVIGRSDYHW--QHEPILYGWKPGAAHTWNSDRKQTTVWEFDKPLR-------------- 104
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
HPT KP + ++ + +S+ G+++ +PF GSG++ A++L R +E
Sbjct: 105 -----NGEHPTMKPVGIPAKGIQNSSFKGNLVFEPFGGSGSTLIAAEQLNRICYIMEYDP 159
Query: 256 DYIDIATKR 264
Y D+ KR
Sbjct: 160 KYCDVIIKR 168
>gi|268686802|ref|ZP_06153664.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae SK-93-1035]
gi|268627086|gb|EEZ59486.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
gonorrhoeae SK-93-1035]
Length = 605
Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 314 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 368
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 369 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 426
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 427 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERMKK 466
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 68/211 (32%), Gaps = 19/211 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ L L V LI+ DPPY +P
Sbjct: 75 KQPVDEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYY----FVKKKP 130
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ- 119
S + F + LL + +L +G + + + +L
Sbjct: 131 QDSFGYNTNFK------LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDE 184
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---- 174
+ ++ + N TL++A K+ Y F D
Sbjct: 185 IFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWE 244
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 245 EDEIGFYKKGAPMRATGTEDKREDRPEMFYP 275
>gi|163716605|gb|ABY40517.1| putative DNA cytosine methylase [Burkholderia phage Bups phi1]
Length = 363
Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H PEAL+ +++ ++PGD++ DPFFGSGT+G VA++L R F+G E+ DY +
Sbjct: 291 AHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGRRFLGCELNPDYEPLQR 350
Query: 263 KRIAS 267
R+
Sbjct: 351 DRLRQ 355
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 44/215 (20%), Positives = 64/215 (29%), Gaps = 57/215 (26%)
Query: 40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
V I PPY + Y PD S+ + CR++L +
Sbjct: 11 VQTIVTSPPYW---GLRSYLPDGHPDKG--SEIGSESTLREFIDTLVGVFELCRQLLVDD 65
Query: 100 GTLWVIGSY-----------------------HNI---------------------FRIG 115
GTLW+ NI +R+
Sbjct: 66 GTLWLNMGDAYASSGGQTPMRGETFAGRARAKENICLSNRKAGIDGLKVKDLMGQPWRLA 125
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
LQ+ +++ DI+W K NPMP R AHE L S S + Y + + +
Sbjct: 126 FALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHEYLFLLSKSE--RYYYDFHAMQEPVS 183
Query: 176 EDVQMRSDWLIPI------CSGSERLRNKDGEKLH 204
RS +G E R K G +
Sbjct: 184 GGAHARSPGNRSHKATSAFAAGDEHHRTKSGLVAY 218
>gi|193064850|ref|ZP_03045927.1| DNA methylase [Escherichia coli E22]
gi|192927535|gb|EDV82152.1| DNA methylase [Escherichia coli E22]
Length = 350
Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ +S+ + LP S+DLI DPPY + + W E Y
Sbjct: 12 LVNADSLQYIATLPDNSIDLIVTDPPYF-----------KVKPNGWDNQW---KGDEDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ S H + ++ F +LN I+W K + N
Sbjct: 58 RWLDMCLAQFWRVLKPAGSLYLF-SGHRLAADIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ ++
Sbjct: 117 KESLRSYF 124
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S+KPGD++ D F GSG++ +A +L
Sbjct: 267 YTDVWTHKTVQFYPGK--HPCEKPADMLRQIINASSKPGDVVADFFMGSGSTVKIALELG 324
Query: 246 RSFIGIEMKQDYIDIATKRIA 266
R IG+E+++D + I
Sbjct: 325 RQAIGVELEEDRFSQTVEEIR 345
>gi|57505716|ref|ZP_00371642.1| adenine specific DNA methyltransferase (mod) [Campylobacter
upsaliensis RM3195]
gi|57015989|gb|EAL52777.1| adenine specific DNA methyltransferase (mod) [Campylobacter
upsaliensis RM3195]
Length = 650
Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/193 (12%), Positives = 58/193 (30%), Gaps = 18/193 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
+N I + + ++ + +IKGN++ L L V LI+ DPPYN + Y
Sbjct: 145 QNFELIGDLKENLNNA-NLLIKGNNLLCLHSLKKKFANQVKLIYIDPPYNTGNDSFNYND 203
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + + F + L R L+ +G +++ + + +
Sbjct: 204 N--------------FNHSTWLCFMKNRLEIAREFLRDDGVIFIQCDDNEQAYLKVLCDE 249
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ + + + + + Y + + +
Sbjct: 250 IFNGGGGGNNFVGCVAVKMTPSSGVKRRFANIKFIKNKEYLLIYKKREININPLYDVINN 309
Query: 181 RSDWLIPICSGSE 193
+G E
Sbjct: 310 YDPHYSIYFNGKE 322
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDII 227
+ NE + +R D+ G NK+G QKPE L+ I+ ++T+ D++
Sbjct: 425 WKMNDENEIISLRGDFWDCKYDGDMGNINKEGFTKFGQGQKPERLIMDIIKATTQENDLV 484
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+D F GSGT+ AVA K++R FIGIE I +R+
Sbjct: 485 MDFFAGSGTTLAVAMKMKRRFIGIEQMDYIESITKERLKK 524
>gi|330988135|gb|EGH86238.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 140
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 12/138 (8%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I+ G+ I V+ LP +SV PPY + V +
Sbjct: 4 LHQILLGDCIDVMRTLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPA 52
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ A RRVL+ +GT+WV + G D W+
Sbjct: 53 EFIARLVDVFREVRRVLRADGTIWVNMGD-SYATGGRGGGGSYMAERGDAAWKGKGSATG 111
Query: 140 FRGRRFQNAHETLIWASP 157
+R H+ L+
Sbjct: 112 WRSAPAGFKHKDLMGMPW 129
>gi|77163949|ref|YP_342474.1| DNA methylase N-4/N-6 [Nitrosococcus oceani ATCC 19707]
gi|76882263|gb|ABA56944.1| DNA methylase N-4/N-6 [Nitrosococcus oceani ATCC 19707]
Length = 238
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 30/246 (12%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
+++E ++ F+ K IK + + L +L SV F DP Y + +L +
Sbjct: 15 SVSEKKSIPFDRK---IKMDGLKFLGRLVDNSVPAAFFDPQY-RGVMDKLKYGNEGSRQQ 70
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
+ + ++ RVL P+G L++ ++ + +
Sbjct: 71 LRAQMKQMPE-----ETIFDFVSEIARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPMKTV 125
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
D++ + G R + E L+ A P + ++ ++ R
Sbjct: 126 DLITWDKERIG--MGYRSRRKAEYLLVAQKKPVRAKGVWTNHSIPDVYQEKFQRDMSF-- 181
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
HP KP L ++++ + T GD+++DP GS + A A++ R
Sbjct: 182 ---------------AHP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQTGRK 224
Query: 248 FIGIEM 253
F+G ++
Sbjct: 225 FLGCDI 230
>gi|313813484|gb|EFS51198.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
HL025PA1]
Length = 617
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + W S+ + + G++ T KPE LL R++ + PGDI+LD
Sbjct: 314 QGRVPTTWWPHEEVGHSQEGKKEILSLFPGQQPFSTPKPERLLERVITIGSNPGDIVLDV 373
Query: 231 FFGSGTSGAVAKKLRRSFIGIE-MKQDYIDIATKRIASVQPLGN 273
F GSGT+ AVA+K+ R ++ E ++ + R+ V +
Sbjct: 374 FAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQD 417
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 23/175 (13%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
+ + A +E + + + +I G + + L ++P V LI+ DPP+N
Sbjct: 55 PKSDEFAYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA 114
Query: 53 LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
Y + + R L +++L +G++WV +
Sbjct: 115 QTFASYEDN--------------LEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDDVEVH 160
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
R+ ++ + + ++++T++ + + N
Sbjct: 161 RMRVLMDEVFGADRFVAEMQWQKTYSPENRSVISHSNDTILVYCLNQERFKAVRN 215
>gi|150026205|ref|YP_001297031.1| type III modification methyltransferase [Flavobacterium
psychrophilum JIP02/86]
gi|149772746|emb|CAL44230.1| Probable type III modification methyltransferase [Flavobacterium
psychrophilum JIP02/86]
Length = 554
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 13/228 (5%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL----- 64
QN +KII G+++ L+ L + I+ DPPYN +Y + +
Sbjct: 36 QNEPNNSGNKIIHGDNLEALKSLLPEYEGKIKCIYIDPPYNTGNESWVYNDNVNHPKIKK 95
Query: 65 --VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ V + + + + L ++L +G +++ + + +
Sbjct: 96 WLGEVVGKDGEDLTRHDKWLCMMYPRLKLLHKLLAKDGAIFISIDDNEQAYLKLLCDEIF 155
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ +N + AHE+L+ E +
Sbjct: 156 GANNFVGNIAVVNNFKGRSDDKFIATAHESLLIFHKGNFITNGVEIPSEYST--EYKEKD 213
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
S + +R N P + S D +++
Sbjct: 214 SVGNYRLLGLRKRGSNSREIDRPNLFYPIYFDEKSNKISLDKNDDLIE 261
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 19/165 (11%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL---IPICSGSERLRNKDGEKLHPTQ 207
+ + + +Y + N+ ++ +S W +G+ +L+ EK T
Sbjct: 289 EIRIVKTRNEFDVFQKDYLEKEGINKRIKPKSFWHGSEFSSEAGTLQLKKIFQEKTFDTP 348
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIA 261
K + L +T IILD F GSGT+ R FI IEM+ I
Sbjct: 349 KSVDFIEYCLQQATDKNSIILDSFAGSGTTAHAVLNLNNHDGGNRKFILIEMEDYANRIT 408
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
+R+ V E K+ E Q G+ L
Sbjct: 409 AERVKRVINGYGEE-----SKKIE-----GTDGSFNFYQLGEPLF 443
>gi|325201916|gb|ADY97370.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
Length = 751
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 465 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 519
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 520 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIV 577
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 578 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 617
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 27/215 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPP-YNLQLNGQLYR 59
K ++ + + ++ IIKGN++ L L V LI+ DPP Y ++ Q
Sbjct: 226 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYYFVKKKQQDSF 285
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
++ + F + L + +L +G + + + +L
Sbjct: 286 GYNTNFK-----------LSTWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLD 334
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAA 174
+ + + + N +G + A TL++A K+ Y F D
Sbjct: 335 EIFGF---ENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFL 391
Query: 175 ----NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 392 EKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYP 426
>gi|222153319|ref|YP_002562496.1| modification methylase [Streptococcus uberis 0140J]
gi|222114132|emb|CAR42604.1| putative modification methylase [Streptococcus uberis 0140J]
Length = 743
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 11/142 (7%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
II+ ++ L+ L K VD I+ DPPYN Y + DS D +
Sbjct: 59 IIEADNFHALQLLEYLYPKKVDCIYIDPPYNTGARDWKYNNN------YVDSSDNWR-HS 111
Query: 80 AYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ + + L +R+L P+ G L V H + + +L+ + ++ NP
Sbjct: 112 KWLSMMQKRLKIAKRILNPDTGVLIVTIDEHEVHHLRILLEEIFTGANIRMITSVINPKG 171
Query: 139 NFRGRRFQNAHETLIWASPSPK 160
+G + P K
Sbjct: 172 VSQGSFARVEEYIFYIFMPESK 193
>gi|207108433|ref|ZP_03242595.1| type II DNA modification (methyltransferase [Helicobacter pylori
HPKX_438_CA4C1]
Length = 244
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
ER++N + TQKPE LL RI+ +S+ I+LD F GSGT+ AVA KL+R +IGIE
Sbjct: 59 ERVKNNENL----TQKPEKLLERIIQASSDENSIVLDFFAGSGTTCAVAHKLKRKYIGIE 114
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVLTGK 282
M + + + R+ V K
Sbjct: 115 MGEHFDSVILPRLKKVIGALKSGAAKEFNK 144
>gi|121635081|ref|YP_975326.1| putative type III restriction/modification system modification
methylase [Neisseria meningitidis FAM18]
gi|120866787|emb|CAM10540.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
Length = 744
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 453 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 507
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 508 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIV 565
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 566 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 605
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 27/215 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPP-YNLQLNGQLYR 59
K ++ + + ++ IIKGN++ L L V LI+ DPP Y ++ Q
Sbjct: 214 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLATQFKGKVKLIYIDPPYYFVKKKQQDSF 273
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
++ + F + L + +L +G + + + +L
Sbjct: 274 GYNTNFK-----------LSTWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLD 322
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAA 174
+ + + + N +G + A TL++A K+ Y F D
Sbjct: 323 EIFGF---ENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFL 379
Query: 175 ----NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 380 EKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYP 414
>gi|218133355|ref|ZP_03462159.1| hypothetical protein BACPEC_01220 [Bacteroides pectinophilus ATCC
43243]
gi|217992228|gb|EEC58232.1| hypothetical protein BACPEC_01220 [Bacteroides pectinophilus ATCC
43243]
Length = 460
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 19/190 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLN------GQLYRPD 61
E+ ++ I+G+++ VL+ L + +I+ DPPYN + ++ +
Sbjct: 20 EDSKDADTTENLYIEGDNLEVLKLLRQNYYGAIKMIYIDPPYNTGNDFVYNDSFEMSESE 79
Query: 62 HSLVDA---------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
++V+ V +S + + + L + +L +G + + H
Sbjct: 80 SNIVEGTISVVGEKYVINSASTNKYHAKWLSMLYSRLKIAKDLLSDDGIISISIDEHEFE 139
Query: 113 RIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + + KSNP + + HE L+ + S + +
Sbjct: 140 NLIKLCKEVFGEQNYIGSIVVKSNPRGSMSTAELASLHEYLVLFAKSRNDVNIIGHALSE 199
Query: 172 KAANEDVQMR 181
+E
Sbjct: 200 NMLSEYKYED 209
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKP 209
++G T A +E I +G+E ++ G+ + KP
Sbjct: 298 EWDIFQKDYLSRGETRRTKAKSIWDE-------SEINYQNGTEEVKRLLGKAGVFDYSKP 350
Query: 210 EALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR 245
L+ +I+ GDI+LD F G+ T+ +
Sbjct: 351 VFLIKQIMNMLDLNNGDIVLDFFSGAATTAQAVFEYN 387
>gi|224436923|ref|ZP_03657904.1| type III restriction/modification enzyme, methylase subunit
[Helicobacter cinaedi CCUG 18818]
gi|313143394|ref|ZP_07805587.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
18818]
gi|313128425|gb|EFR46042.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
18818]
Length = 679
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 19/125 (15%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L V LI+ DPPYN + Y + +
Sbjct: 163 NLLIKGNNLLALHSLKKKFANQVKLIYIDPPYNTGNDSFNYNDN--------------FN 208
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F + L + L+ +G +++ + + ++ + + + +
Sbjct: 209 HSTWLTFMKNRLEIAKEFLRDDGVIFIQCDDNEQAYLKVLMDEFF--GRENFICMITCKV 266
Query: 138 PNFRG 142
G
Sbjct: 267 KAPSG 271
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ + + G + + KL +KPEALL RI+ ST+ D+++D F GSGT+
Sbjct: 433 YLTNIFTDDFWQG---ISKEGQVKLKNGKKPEALLKRIIEISTQENDLVMDFFAGSGTTL 489
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
AVA K+ R +IGIE I +R+ V ++ + + L
Sbjct: 490 AVAMKMNRRWIGIEQMDYIESITKERLKKVVAGEQGGIS-----KAVNWQGGGSFIYCKL 544
Query: 299 IQ 300
+
Sbjct: 545 MP 546
>gi|163796705|ref|ZP_02190663.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
gi|159177959|gb|EDP62506.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
Length = 437
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/249 (16%), Positives = 81/249 (32%), Gaps = 27/249 (10%)
Query: 21 DKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKF- 75
+++ G+S V + + L DPPY + +G + + +WD
Sbjct: 176 HRLLCGDSTKPEDVQHLMNGERAALFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDSS 235
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ YD F A + + + + + + + ++ I+W K
Sbjct: 236 QGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKDR 292
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ +H + + + + S W +P + ER
Sbjct: 293 GV-------LTRSH-----YLWKHEPCFMGWRRPNRPPKVAEETLASTWALPSFARDERP 340
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
HPT KP + G + +PF GSG+ + R +E+
Sbjct: 341 -------DHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEISP 393
Query: 256 DYIDIATKR 264
Y+D+A +R
Sbjct: 394 AYVDVAVER 402
>gi|172041475|ref|YP_001801189.1| putative DNA restriction-modification system, DNA methylase
[Corynebacterium urealyticum DSM 7109]
gi|171852779|emb|CAQ05755.1| putative DNA restriction-modification system, DNA methylase
[Corynebacterium urealyticum DSM 7109]
Length = 664
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 184 WLIPICSGSERLRNKDGEKLHP------TQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
W G R + + L P T KPE LL RI+ + PGDI+LD F GSGT+
Sbjct: 368 WWENKDVGHNRAAKSELKALFPALTPFDTPKPERLLERIIHIGSNPGDIVLDVFAGSGTT 427
Query: 238 GAVAKKLRRSFIGIE-MKQDYIDIATKRIASVQPLGN 273
AVA+K+ R ++ E ++ + R+ V +
Sbjct: 428 AAVAQKMGRRWVTCELLESTFTTFTRPRLEKVVNDED 464
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 28/203 (13%)
Query: 20 KDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
++ +I G + + L ++P V LI+ DPP+N Y +
Sbjct: 73 ENLLILGESGDVLESLTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDN--------- 123
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ R LL +++L +G++WV + R+ ++ +
Sbjct: 124 -----LEHSIWLTMMRDRLLHMKKLLADDGSIWVHLDDVEVHRMRVLMDEVFGAGNFQAE 178
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT---FNYDALKAANEDVQMRSDWLIP 187
RG F + +I S + D + +N D W
Sbjct: 179 IVWQKADSPRRGLGFSVDQDFVIVYRRSEAFEPNKALRTAADNARFSNPDNDPLGPWWDD 238
Query: 188 ICSGSERLRNKDGEKLHPTQKPE 210
SG+ + G + Q P
Sbjct: 239 NPSGNHG--DGSGGMCYAIQNPL 259
>gi|29565979|ref|NP_817550.1| gp101 [Mycobacterium phage Cjw1]
gi|29424704|gb|AAN01715.1| gp101 [Mycobacterium phage Cjw1]
Length = 231
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
N+DG K+ H T KP AL+ ++ T PG ++LDPF GSGT+ + I IE +
Sbjct: 156 NEDGNKVAHSTVKPLALMRWLVKLVTPPGGVVLDPFAGSGTTVEACLLEKFRCIAIENEP 215
Query: 256 DYIDIATKRIAS 267
DYI + +R+
Sbjct: 216 DYIPLIEQRLER 227
>gi|115522589|ref|YP_779500.1| DNA methylase N-4/N-6 domain-containing protein [Rhodopseudomonas
palustris BisA53]
gi|115516536|gb|ABJ04520.1| DNA methylase N-4/N-6 domain protein [Rhodopseudomonas palustris
BisA53]
Length = 596
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 168 YDALKAANEDVQMRSDWLIPICSG--SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
Y + ++ + L I S L N+ G + +KPEAL+ R L ++ PGD
Sbjct: 304 YQDKLKIVDGKRVAGEPLTTIWDDILSNNLHNEGGIEFPKGKKPEALIKRCLDLASDPGD 363
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
++LD F GSGT+GAVA K+ R +I +E+ + + RI + +
Sbjct: 364 LVLDSFAGSGTTGAVAHKMGRRWIMVELGEHAVTHIVPRIKRINDGIDTS 413
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 20/158 (12%)
Query: 19 WKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ + +I+G+++ L+ L + ++ DPP+N Q + ++
Sbjct: 45 FDNILIQGDNLLALKALEEAYAGRIKCVYIDPPFNTQQAFE--------------HYEDG 90
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ + R L ++++ +GTL+V + + I T+L + +
Sbjct: 91 LEHSLWLSLIRNRLELIHKLMRDDGTLFVHIDDNELGYIITVLDEIFGRTNRASIVTFKQ 150
Query: 136 PMPNFRGRRFQNAHET---LIWASPSPKAKGYTFNYDA 170
T ++ S + A
Sbjct: 151 GSATGHKSINPGVVTTSNFILIYSKKKLEWKPKRIFTA 188
>gi|317181324|dbj|BAJ59108.1| adenine-specific DNA methylase [Helicobacter pylori F57]
Length = 821
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG---SERLRNKDGEKLHP 205
H S YD +K A + ++ R+ + + E L +G KL
Sbjct: 585 HIFWQENSKGRLTPYEVIYYDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFD 644
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T KPEALL RI+ ST+ D++LD F GSGT+ AVA KL+R +IGIEM + + + R+
Sbjct: 645 TPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRL 704
Query: 266 AS 267
Sbjct: 705 KK 706
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 20/182 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ K+ +N S E +IK + L L +++D I+ DPPYN Q N +
Sbjct: 356 IYFKDLEEEIKNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFI 415
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y + ++ + L ++L G ++V + + T+
Sbjct: 416 YADNFKR--------------SSWLSMMENRLELAHKLLNNKGVMFVSIDDNEQAYLKTL 461
Query: 118 LQNLNFWILNDIV---WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ + ++ V + + F HE ++ T ++
Sbjct: 462 MDEVFNGGGDNFVASLIWQKKKGGSQDSENFAKEHEYILCYQKEKFTIIDTETDHDIQDF 521
Query: 175 NE 176
N+
Sbjct: 522 NK 523
>gi|294669884|ref|ZP_06734943.1| hypothetical protein NEIELOOT_01777 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308277|gb|EFE49520.1| hypothetical protein NEIELOOT_01777 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 383
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/258 (11%), Positives = 75/258 (29%), Gaps = 42/258 (16%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHS-------------- 63
+ I+ ++ L+ L SV +I+ DPPYN + +Y S
Sbjct: 127 NVFIEAENLEALKILQKSYSGSVKMIYIDPPYNTGSDSFIYPDKFSESREEYARRVGDTD 186
Query: 64 -----LVDAV------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
D V + D + + L + +L+ +G +++ +
Sbjct: 187 DAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQA 246
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
++ + + + + + + + H+ ++ + + + +T
Sbjct: 247 QLKLLCDEVFGVENFVAQFSREAIKGGSQSKFVRETHDYILCYAKNIQYVEFTGFEKEEL 306
Query: 173 AAN--EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
N ++ + G+ R P P + + G
Sbjct: 307 TLNLEDEKGKYAKGRELNKWGAGSRREDSPSMWFPIYSPYGDEIYPIRNDGSEGRW---- 362
Query: 231 FFGSGTSGAVAKKLRRSF 248
+ K+ R++
Sbjct: 363 --------RMGKEKWRNW 372
>gi|219849126|ref|YP_002463559.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aggregans DSM 9485]
gi|219543385|gb|ACL25123.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
9485]
Length = 356
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 21/152 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+++ VL++LP SVD + PPY + + + Y
Sbjct: 26 LLLLGDALFVLKELPDSSVDCVMTSPPYWGKREYE------------NGGIGLERDYRDY 73
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIG--SYHNIFRIGTMLQ-------NLNFWILNDIVWR 132
L +RVLK G+ W+ SYH +G + + + + N +VW
Sbjct: 74 VRHVAEIFLELKRVLKSTGSFWLNIGDSYHRKNLLGIPWRVAFELTDHQGWILRNAVVWN 133
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
K + R N +E + K Y
Sbjct: 134 KVKSGMDNTTDRLGNMYEMVFHFVKQSKGYYY 165
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ G +H P L ++++ P ++LDPF G+GT+ A L R +GI++ +
Sbjct: 284 DTQGRNVHFAPYPVDLCRIPILATCPPEGVVLDPFCGTGTTLYAALNLGRKSVGIDISRK 343
Query: 257 YIDIATKRIASV 268
Y++I +R A+
Sbjct: 344 YLEIVQERCATF 355
>gi|325132432|gb|EGC55125.1| hypothetical protein NMBM6190_0834 [Neisseria meningitidis M6190]
Length = 736
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 445 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 499
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 500 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIV 557
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 558 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 597
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 27/215 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPP-YNLQLNGQLYR 59
K ++ + + ++ IIKGN++ L L V LI+ DPP Y ++ Q
Sbjct: 206 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLATQFKGKVKLIYIDPPYYFVKKKQQDSF 265
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
++ + F + L + +L +G + + + +L
Sbjct: 266 GYNTNFK-----------LSTWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLD 314
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAA 174
+ + + + N +G + A TL++A K+ Y F D
Sbjct: 315 EIFGF---ENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFL 371
Query: 175 ----NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 372 EKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYP 406
>gi|268603870|ref|ZP_06138037.1| type III restriction/modification system modification methylase
[Neisseria gonorrhoeae PID1]
gi|268588001|gb|EEZ52677.1| type III restriction/modification system modification methylase
[Neisseria gonorrhoeae PID1]
Length = 618
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 327 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 381
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 382 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 439
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 440 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERMKK 479
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 68/211 (32%), Gaps = 19/211 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ L L V LI+ DPPY +P
Sbjct: 88 KQPVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYY----FVKKKP 143
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ- 119
S + F + LL + +L +G + + + +L
Sbjct: 144 QDSFGYNTNFK------LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDE 197
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---- 174
+ ++ + N TL++A K+ Y F D
Sbjct: 198 IFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWE 257
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 258 EDEIGFYKKGAPMRATGTEDKREDRPEMFYP 288
>gi|300825607|ref|ZP_07105655.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
gi|300521952|gb|EFK43021.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
Length = 195
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ L SVDLI DPPY + + W + Y
Sbjct: 12 LINTDCLEFIQTLSENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L RVLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
>gi|194303394|ref|YP_002014419.1| gp98 [Mycobacterium phage Porky]
gi|194150879|gb|ACF33915.1| gp98 [Mycobacterium phage Porky]
Length = 419
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I G+ +L +L SVD I DPPY L ++ WD
Sbjct: 7 LIHLGDCRDILAELEDASVDSIVTDPPYELGF--------------MSKKWDGSG----- 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AF C RVLKP G L G R+ +++ F I + I W + P
Sbjct: 48 IAFDVEMWEQCLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGFP 104
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
N+DG K+ H T KP AL+ ++ T PG ++LDPF GSGT+ + I IE +
Sbjct: 344 NEDGTKVAHNTVKPLALMRWLVKLVTPPGGVVLDPFAGSGTTVEACLLEKFRCIAIENEP 403
Query: 256 DYIDIATKRIAS 267
DYI + +R+
Sbjct: 404 DYIPLIEQRLER 415
>gi|296159514|ref|ZP_06842338.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
gi|295890222|gb|EFG70016.1| DNA methylase N-4/N-6 domain protein [Burkholderia sp. Ch1-1]
Length = 673
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 32/161 (19%)
Query: 21 DKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS- 77
+++ G ++S + L VDLI DPPYN + + D WDK +
Sbjct: 97 NELWDGENLSTMVTLYKHRGQVDLIITDPPYNTGEDFR-----------YNDKWDKDPND 145
Query: 78 --------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ F + R +LKP G + + + ++R+G ++ +
Sbjct: 146 PDLGELVAKDDGSRHSKWLKFMTPRVWMMREMLKPGGVIAICIDHRELYRLGMLMDEIFG 205
Query: 124 WILNDIV--WRKSNPMPNFRGR--RFQNAHETLIWASPSPK 160
+ W+K+ N G+ + E ++ + S
Sbjct: 206 EDNRLAIINWQKTYAPKNNVGKRSHVSTSTEYVLVYAKSID 246
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 49/154 (31%), Gaps = 18/154 (11%)
Query: 137 MPNFRGRRFQNAHETLIWASPSPKA--KGYTFNYDALKAANEDVQMRSDWLIPICS---G 191
P R H + K T+ D A + + S G
Sbjct: 363 WPAGYWRDGGLGHFRVKVYLKDVKKGVVPMTYWGDEEFGAPDVIDSTSWDHEQSGHSQTG 422
Query: 192 SERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR----- 245
L + G+ T KP L +I+ +P I+LDPF GSGT+ +L
Sbjct: 423 LNELSSIVGKDHGFTTVKPLRLFKKIIQIWCRPNGIVLDPFAGSGTTAHAVLELNAESDA 482
Query: 246 -RSFIGIEM------KQDYIDIATKRIASVQPLG 272
R FI IE + +R+ V
Sbjct: 483 DRRFILIEQGNTERGDHYAKTLTAERVKRVITGD 516
>gi|42525618|ref|NP_970716.1| adenine-specific DNA modification methyltransferase [Treponema
denticola ATCC 35405]
gi|41815629|gb|AAS10597.1| adenine-specific DNA modification methyltransferase [Treponema
denticola ATCC 35405]
Length = 428
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/213 (13%), Positives = 66/213 (30%), Gaps = 20/213 (9%)
Query: 3 QKNSLAINENQN-SIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
K S N+ ++ + + K+ I+ +++ L L + +I+ DPPYN
Sbjct: 24 SKFSFTENKVKSFNSEDAKNLYIESDNLYALLFLQKDYKDKIKIIYIDPPYNTGKKFTYA 83
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
D F + + + L + +L +G +++ + +L
Sbjct: 84 --------------DNFQTKTEWMNYLYVRLSLAKNLLTDDGLIFISIDDKTCPYLRIIL 129
Query: 119 Q-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-KAKGYTFNYDALKAANE 176
+ ++ R + +HE +I + K K T
Sbjct: 130 DEIFGTKNFISTLVWNNSTGGGLRKKHINTSHEYIILYAKDKTKVKPMTAPMPEKAKKMY 189
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ + + + + +P + P
Sbjct: 190 KYKDADGRFFRYQQFAWKNKTDAKRQKYPIKTP 222
Score = 40.4 bits (93), Expect = 0.49, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRI 216
+T E+ +S + + G K+ KP +LL +
Sbjct: 268 PTKWTIYVKTYLEKKEETVPKSLLPAEYVKTNIQSVYEQKVLFGAKIFDYAKPVSLLKYL 327
Query: 217 LVSSTKPGD-IILDPFFGSGTSGAVAK------KLRRSFIGIE 252
D ++LD F GS T+ R FI ++
Sbjct: 328 FKLVPNSDDAVVLDFFSGSATTAHAVMELNAELNENRKFILVQ 370
>gi|224419165|ref|ZP_03657171.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
98-5491]
gi|313142671|ref|ZP_07804864.1| modification methylase HhaII [Helicobacter canadensis MIT 98-5491]
gi|313131702|gb|EFR49319.1| modification methylase HhaII [Helicobacter canadensis MIT 98-5491]
Length = 229
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 25/227 (11%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + +L+ L S+DL F DP Y L+ Y + + S +
Sbjct: 25 DGLELLQSLGDCSIDLCFFDPQYRGVLDKMRYGNEGERQKGRSVLVQMSESTIIHF---- 80
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
+ RVLK + L + ++ + + D++ M G R +
Sbjct: 81 --IQEISRVLKSSRYLMLWIDKFHLCEGVRPWLDSTSLEIVDLITWDKMKMG--MGYRTR 136
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
E L+ P T+ ++ + + + K HP
Sbjct: 137 KQSEYLLIVQKKPIKAKGTWKLHNIRDVCSEKIPQ-----------------NELKAHPH 179
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
KP+ L ++ S T GD++ DP GS + K+L R+FIG +
Sbjct: 180 SKPKTLQKTLIESCTNIGDLVCDPAAGSFSVLECCKELGRNFIGTNL 226
>gi|313667116|gb|ADR73007.1| M.BsiWI [Bacillus sp. NEBM184]
Length = 353
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 21/151 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+++ VL+++P S+D PPY + + +
Sbjct: 24 LFLCGDALQVLKEIPDDSIDFCMTSPPYWQKRKYS------------GGGIGLEKDYRDF 71
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIG--------TMLQNLNFWILNDIVWR 132
RVLKP G+ W+ +G + ++ ++ N+ + ND++W
Sbjct: 72 IKNLLLICKEIYRVLKPTGSFWLNLGDSYKDKKLLGIPWRVAIALMDEQNWILRNDVIWN 131
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
K + + NAHE + + K
Sbjct: 132 KVKGGMDNSKDKLGNAHEHIFHFVKNKKYYY 162
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+K + H PE L ++++ P I+LDPF G+GT+ VAK+ R IGIE+ ++
Sbjct: 281 DKQRKDNHFAPYPEDLCKIPILATCPPDGIVLDPFAGTGTTNKVAKQNGRKSIGIEISEE 340
Query: 257 YIDIATKRIA 266
Y+++A +R +
Sbjct: 341 YLEVAEERCS 350
>gi|152978352|ref|YP_001343981.1| DNA methylase N-4/N-6 domain-containing protein [Actinobacillus
succinogenes 130Z]
gi|150840075|gb|ABR74046.1| DNA methylase N-4/N-6 domain protein [Actinobacillus succinogenes
130Z]
Length = 611
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 26/230 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------------------GQLYR 59
+ I+G ++ VL+ L SV +I+ DPPYN + G L
Sbjct: 37 NVFIEGENLDVLKVLQKSYFNSVKMIYIDPPYNTGNDFIYKDNFAESKAEYAERVGDLDA 96
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
V +S + + L + +L +G +++ + ++ +
Sbjct: 97 DGKLKRAFVRNSKENGHYHSNWLNMMLPRLHLAKNLLTDDGVIFISIDDNEQAQLKLLCD 156
Query: 120 NLNFWILNDIVWRKSNPMPNFR-GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ + N + + +++ + + + + + N +D+
Sbjct: 157 EVFGEENFVAILSTENNPKGRKNSKYISISNDFCLIYAKNKEQGCFIENIPKN---EKDM 213
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ + SG L ++ T + + D I+
Sbjct: 214 KQDENGNYVHSSGKRVLVGENEFNNFVTDFSSD-KHYSIYFNKDEDDFII 262
>gi|15676625|ref|NP_273769.1| N-6 adenine-specific DNA methylase [Neisseria meningitidis MC58]
gi|7225954|gb|AAF41140.1| N-6 adenine-specific DNA methylase [Neisseria meningitidis MC58]
gi|308388917|gb|ADO31237.1| N-6 adenine-specific DNA methylase HgaI [Neisseria meningitidis
alpha710]
gi|325127849|gb|EGC50756.1| hypothetical protein NMXN1568_1412 [Neisseria meningitidis N1568]
gi|325129890|gb|EGC52693.1| putative DNA methylase [Neisseria meningitidis OX99.30304]
gi|325133758|gb|EGC56414.1| putative DNA methylase [Neisseria meningitidis M13399]
gi|325136049|gb|EGC58659.1| putative DNA methylase [Neisseria meningitidis M0579]
gi|325140117|gb|EGC62646.1| putative DNA methylase [Neisseria meningitidis CU385]
gi|325144069|gb|EGC66377.1| putative DNA methylase [Neisseria meningitidis M01-240013]
gi|325200588|gb|ADY96043.1| putative DNA methylase [Neisseria meningitidis H44/76]
gi|325202476|gb|ADY97930.1| putative DNA methylase [Neisseria meningitidis M01-240149]
gi|325206430|gb|ADZ01883.1| putative DNA methylase [Neisseria meningitidis M04-240196]
gi|325207772|gb|ADZ03224.1| putative DNA methylase [Neisseria meningitidis NZ-05/33]
Length = 216
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/252 (18%), Positives = 77/252 (30%), Gaps = 50/252 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I +++ ++ + P K DL DPPY + + R + Y
Sbjct: 3 TISNEDNMILMSRYPDKYFDLAIVDPPYGIL--NKTKRGGDYKFN-----------MNEY 49
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ +KP+ T + + +FR+ ++ R
Sbjct: 50 SQWD----------IKPDQTYF-----NELFRVSKNQIIWGGNYFGELWLRSEYNKGFI- 93
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+N ETL S + A + + +
Sbjct: 94 -IWDKNQPETLNNFSMAEMAWSSFDRPSKIFRFSVRK--------------------NRN 132
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K HPTQKP L +L K GD ILD GSGT + E+ DY +
Sbjct: 133 KTHPTQKPVELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSDYYQQS 192
Query: 262 TKRIASVQPLGN 273
++I + P
Sbjct: 193 IEKIKNNLPEAR 204
>gi|325198519|gb|ADY93975.1| conserved hypothetical protein [Neisseria meningitidis G2136]
Length = 736
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 445 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 499
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 500 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIV 557
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 558 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 597
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 27/215 (12%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPP-YNLQLNGQLYR 59
K ++ + + ++ IIKGN++ L L V LI+ DPP Y ++ Q
Sbjct: 206 KQAVGEIKRHSDGTPAENLIIKGNNLIALHSLATQFKGKVKLIYIDPPYYFVKKKQQDSF 265
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
++ + F + L + +L +G + + + +L
Sbjct: 266 GYNTNFK-----------LSTWLTFMKNRLSIAKELLTDDGIIVISIDDDGNAYLKILLD 314
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAA 174
+ + + + N +G + A TL++A K+ Y F D
Sbjct: 315 EIFGF---ENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFL 371
Query: 175 ----NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 372 EKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYP 406
>gi|217032405|ref|ZP_03437899.1| hypothetical protein HPB128_164g5 [Helicobacter pylori B128]
gi|298737043|ref|YP_003729573.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
gi|216945884|gb|EEC24502.1| hypothetical protein HPB128_164g5 [Helicobacter pylori B128]
gi|298356237|emb|CBI67109.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
Length = 655
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 28/200 (14%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 166 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L A R L +G ++V + + ++ + + + V + +
Sbjct: 212 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIF--LRENFVATITCKV 269
Query: 138 PNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRSDWLIPI 188
+ G N E ++ + S + Y + + N Q S
Sbjct: 270 KSAGGLTTDTEMIFNCSEYILVYAKSFENLTYNSIKISKEIINSQSKTSEQYNSIINNVD 329
Query: 189 CSGSERLRNKDGEKLHPTQK 208
E + KD K + K
Sbjct: 330 HRKKEFICEKDNIKYYKISK 349
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ + G + N+ L +KPE L+ RIL +T D++LD F GSGT+ AVA
Sbjct: 452 NIFTEDFWQG---ISNEGQITLKNGKKPEQLIYRILEIATNENDLVLDFFAGSGTTCAVA 508
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
K++R +IGIE I +R+ V ++ +
Sbjct: 509 HKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDFK 550
>gi|307249865|ref|ZP_07531839.1| hypothetical protein appser4_6630 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858054|gb|EFM90136.1| hypothetical protein appser4_6630 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 645
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 18/123 (14%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ I+G+++ L+ L V +I+ DPPYN + + +
Sbjct: 98 NLFIEGDNLEALKLLQETYLGKVKMIYIDPPYNTDKDFIYKDNFAMANEDYQLESGQVDE 157
Query: 78 ---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ + + L R +L +G +++ + + + + +
Sbjct: 158 EGNRLVVNSESNGRFHSDWLSMIYSRLKLARNLLTDDGVIFISIDDNEVANLKRICDEIF 217
Query: 123 FWI 125
Sbjct: 218 GGN 220
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 63/229 (27%), Gaps = 26/229 (11%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
+DL+ + + +DA + F A T R
Sbjct: 253 NNKIDLVL-----------NQFEINEEDLDAWMEDEIGFYKQGANLKSTGE---NAPREK 298
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
+PN + N I N + I R +N I+
Sbjct: 299 RPNLYFPIFIDDENKIYITENDIPPNEYKGRLITIYPITDGNEMSWRWSKNKFLNEIYDV 358
Query: 157 PSPKAKGYTFNYDALKAANED------VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ Y + + D + +G+ +++ KL KP
Sbjct: 359 IVVRNDNGVALYKKQRPSLGDLPSKKPKTIFYKPEYSSGNGTSQIKEIFKNKLFQNPKPI 418
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
L+ L T ILD F GS T+ + R FI +++
Sbjct: 419 ELIMDFLRIGTNVNSCILDFFAGSATTAHAVMQLNAEDGGNRKFIMVQI 467
>gi|239999121|ref|ZP_04719045.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae 35/02]
gi|268594957|ref|ZP_06129124.1| hypothetical protein NGBG_01248 [Neisseria gonorrhoeae 35/02]
gi|268548346|gb|EEZ43764.1| hypothetical protein NGBG_01248 [Neisseria gonorrhoeae 35/02]
Length = 736
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 445 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 499
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 500 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 557
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 558 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERMKK 597
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 68/211 (32%), Gaps = 19/211 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ L L V LI+ DPPY +P
Sbjct: 206 KQPVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYY----FVKKKP 261
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ- 119
S + F + LL + +L +G + + + +L
Sbjct: 262 QDSFGYNTNFK------LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDE 315
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---- 174
+ ++ + N TL++A K+ Y F D
Sbjct: 316 IFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWE 375
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 376 EDEIGFYKKGAPMRATGTEDKREDRPEMFYP 406
>gi|172036680|ref|YP_001803181.1| hypothetical protein cce_1765 [Cyanothece sp. ATCC 51142]
gi|171698134|gb|ACB51115.1| hypothetical protein cce_1765 [Cyanothece sp. ATCC 51142]
Length = 560
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/278 (20%), Positives = 97/278 (34%), Gaps = 31/278 (11%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
SL EN +SI E + +G+S ++L +L + + PPY N
Sbjct: 293 KSMKSLTSRENLSSIPEI--TLYQGDSFNILSQLESNYLGGAVTSPPYYNARNYS----- 345
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV----------IGSYHNI 111
++S+ Y R LK L + I + ++
Sbjct: 346 ------------QWSNIYCYLYDMYNIFNQVYRCLKEGSPLLINIFDYFDNEKIIVFSDM 393
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ +L + +I I + + +G N + SP +A + + +
Sbjct: 394 GKKRLILSSYISFICRYIGFNHLGNIAWDKGEIEGNRNFNQGNYSPYYQAPHNCWEHILI 453
Query: 172 KAA-NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ N + I ++ H PE + S +L S +IILDP
Sbjct: 454 FSKGNPSFDVTKIPKIIKEKPITKIVKGKNIYGHTAPFPEKVPS-LLFSLITKDEIILDP 512
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
F GS T+G VA K I IE+ + Y D+A +
Sbjct: 513 FTGSMTTGRVALKYGIKSINIELHKHYCDLALNLLKQQ 550
>gi|253828098|ref|ZP_04870983.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
98-5491]
gi|253511504|gb|EES90163.1| adenine-specific DNA methylase [Helicobacter canadensis MIT
98-5491]
Length = 238
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 25/227 (11%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + +L+ L S+DL F DP Y L+ Y + + S +
Sbjct: 34 DGLELLQSLGDCSIDLCFFDPQYRGVLDKMRYGNEGERQKGRSVLVQMSESTIIHF---- 89
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
+ RVLK + L + ++ + + D++ M G R +
Sbjct: 90 --IQEISRVLKSSRYLMLWIDKFHLCEGVRPWLDSTSLEIVDLITWDKMKMG--MGYRTR 145
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
E L+ P T+ ++ + + + K HP
Sbjct: 146 KQSEYLLIVQKKPIKAKGTWKLHNIRDVCSEKIPQ-----------------NELKAHPH 188
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
KP+ L ++ S T GD++ DP GS + K+L R+FIG +
Sbjct: 189 SKPKTLQKTLIESCTNIGDLVCDPAAGSFSVLECCKELGRNFIGTNL 235
>gi|91202366|emb|CAJ75426.1| partial CDS, similar to adenine specific DNA methylase [Candidatus
Kuenenia stuttgartiensis]
Length = 488
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 18/151 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E ++ +I G+++ L+ L A + DPPYN +
Sbjct: 31 EKSYGNKNNENMLIFGDNLLALKALEQDFAGEIKCACIDPPYNTGNAFE----------- 79
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWIL 126
+D + + + + ++L+ +GTLW+ + +
Sbjct: 80 ---HYDDGLEHSIWLSLMKPRIEIIHKLLRDDGTLWITIDDTEAHYLKILCDEVFGRGNF 136
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ +S P H ++
Sbjct: 137 VANIVWQSKDTPGNNAIAIAQTHNHILVFKK 167
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 3/173 (1%)
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
P G R N + S+ ++ + W
Sbjct: 193 PRGPWLAAPLTRVEHRDRDYYAIRNPVGREVFPPKGSSWRRPPEKMKWLEDDGRIWWGKK 252
Query: 158 SPKAKGY--TFNYDALKAANEDVQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLS 214
F +A + D+ + S ++ +G K T KPE L+
Sbjct: 253 GDAEFPMEKKFLSEAKEGVVNQTWWAYDFGGSTRNASAEMKGLFEGRKSFDTPKPEKLIQ 312
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
RI +T P D +LD F GSGT+ AVA K+ R +IGIE+ + R+
Sbjct: 313 RIFEIATNPSDWVLDSFLGSGTTAAVAHKMWRRWIGIELGEHCHTHCLPRLKK 365
>gi|317011696|gb|ADU85443.1| putative type III restriction enzyme M protein [Helicobacter pylori
SouthAfrica7]
Length = 622
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ D + G+E ++ ++ KPEAL+SRIL +T+ D+ILD F GSGT+
Sbjct: 412 KSIFWDKSMITQKGTEEVKQIFKTQIFDFPKPEALISRILEIATQENDLILDFFAGSGTT 471
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
AVA K++R +IGIE I +R+ V ++ + + L E
Sbjct: 472 CAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCNFKGGGSFVYAELKEVN 531
Query: 298 LIQPGQILTNAQGNISATVCAD-GTLISGTELGSIHRV 334
L QIL + + D I I+R+
Sbjct: 532 LEIKKQILNAKSASECLKIFNDLNKRIVKRTDCEINRI 569
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 17/157 (10%)
Query: 21 DKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K I+ DPPYN + Y + +
Sbjct: 162 NYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNYNDNF--------------N 207
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L A R L +G ++V + ++ +
Sbjct: 208 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYCKVLMDEIFGRENFVSCITHIVKP 267
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ HE ++ + + + A
Sbjct: 268 EGRMYGQVAKTHEYILVYAKNINNLIFNEIEKEGHAF 304
>gi|268684491|ref|ZP_06151353.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268624775|gb|EEZ57175.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
Length = 610
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 319 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 373
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 374 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 431
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 432 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERMKK 471
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 19/211 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ + L V LI+ DPPY +P
Sbjct: 80 KQPVDEIKRRSDGTPAENLIIKGNNLIAMHSLAKQFKGKVKLIYIDPPYY----FVKKKP 135
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ- 119
S + F + LL + +L +G + + + +L
Sbjct: 136 QDSFGYNTNFK------LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDE 189
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---- 174
+ ++ + N TL++A K+ Y F D
Sbjct: 190 IFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWE 249
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 250 EDEIGFYKKGAPMRATGTEDKREDRPEMFYP 280
>gi|219882646|ref|YP_002477810.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
A6]
gi|219861652|gb|ACL41993.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
A6]
Length = 710
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 10/138 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G + LE L A +DLI+ DPPYN Y D DS D +
Sbjct: 170 HTVINGENYHALEALQYTHAGKIDLIYIDPPYNTGNADWKY------NDRYVDSKDGYR- 222
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ +F LL + +LKP G + + R+ ++ + S
Sbjct: 223 HSKWLSFMEKRLLIAKTLLKPTGVIVMAIGDDEHHRLRSLSDQIIGEENFISSVVWSGGR 282
Query: 138 PNFRGRRFQNAHETLIWA 155
N +A L++A
Sbjct: 283 KNDSRFISNSADYMLVYA 300
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
G+K P K +LSR + ++LD F GSGT+ +L R I +
Sbjct: 470 GDKRFPFPKDRTVLSRWIGLIAPKDAVVLDFFGGSGTTAEAVIRLNAEDGGTRQTILVTN 529
Query: 254 KQDY-IDIATKRIASVQPLGNIE 275
+ D R A +P +
Sbjct: 530 NELSKADDTKLRKAGHKPGDDEY 552
>gi|312874131|ref|ZP_07734165.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
2052A-d]
gi|311090201|gb|EFQ48611.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
2052A-d]
Length = 570
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 21/167 (12%)
Query: 1 MSQKNSLAINENQNS----IFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL 53
+ + + I + + S ++ +I G+++ L+ L + V I+ DPPYN
Sbjct: 18 IKIEPRILIEDKEKSNCKNDPNTENMLIHGDNLLALKALESKYAGKVKCIYIDPPYNTGN 77
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ Y D + R+ L+ R +L P+G L F
Sbjct: 78 AFEYY--------------DDNREHSIWLNLMRSRLIILRNLLAPDGVLCCQIDDSEGFY 123
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ +L + + N + + + K
Sbjct: 124 LKVLLDEIFGRDNYLVTLYIQVRYTNKTLAEDSDYQKVIEQCHVYSK 170
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + + G+ RL + G +KPE ++ +IL T GD++LD F GS ++
Sbjct: 315 KPVSNFYDFSGAFGNCRL--EGGVGFKGGKKPEVMIKQILEYYTNVGDLVLDSFLGSAST 372
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
AVA K+ R +IGIEM + R+ +V ++
Sbjct: 373 IAVAHKMNRRYIGIEMGDHAYTLCKTRLDNVIAGDKTGIS 412
>gi|254672179|emb|CBA05031.1| type III restriction-modification system: methylase [Neisseria
meningitidis alpha275]
Length = 344
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 58 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 112
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 113 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIV 170
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 171 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 210
>gi|300115200|ref|YP_003761775.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii
C-113]
gi|299541137|gb|ADJ29454.1| Site-specific DNA-methyltransferase (adenine-specific)
[Nitrosococcus watsonii C-113]
Length = 238
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 93/249 (37%), Gaps = 30/249 (12%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ L+++ + F+ K IK + + L +L SV F DP Y + +L +
Sbjct: 12 DLLSVSAKKTIPFDQK---IKMDGLKFLGRLVDNSVPAAFFDPQY-RGVMDKLKYGNEGS 67
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+ + ++ RVL P+G L++ ++ + +
Sbjct: 68 RQQLRAQMKQMPE-----ETIFDFVSEIARVLCPSGHLFLWIDKFHLCEGTSSWFDGTPM 122
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
D++ + G R + E L+ A P + ++ ++ R+
Sbjct: 123 KTVDLITWDKERIG--MGYRSRRKAEYLLVAQKKPVRAKGVWTNHSIPDVYQERFQRNMS 180
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
HP KP L ++++ + T GD+++DP GS + A A++
Sbjct: 181 F-----------------AHP--KPIGLQAKLIDAVTNSGDVVIDPAAGSFSVLAAAQQT 221
Query: 245 RRSFIGIEM 253
R F+G ++
Sbjct: 222 GRKFLGCDI 230
>gi|308062667|gb|ADO04555.1| type III R-M system methyltransferase [Helicobacter pylori Cuz20]
Length = 657
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 28/200 (14%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 168 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 213
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L A R L +G ++V + + ++ + + + V + +
Sbjct: 214 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIF--LRENFVAMITCKV 271
Query: 138 PNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRSDWLIPI 188
+ G N E ++ + S Y + + N Q S
Sbjct: 272 KSAGGLTTDTEMIFNCSEYILVYAKSFGNLTYNSIKISKEIINSQSKTSEQYNSIINNID 331
Query: 189 CSGSERLRNKDGEKLHPTQK 208
E + KD K + K
Sbjct: 332 YRKKEFICEKDNIKYYKISK 351
Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 6/196 (3%)
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+G+ + ++ S + D K ++ S+ + + N+
Sbjct: 412 KGKDKGIKTQYFLYKSQTITMLKNLIKADDNKKIIYKLEPLSNMFTEDFW--QGISNEGQ 469
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
L +KPEAL+SRIL ST+ D++LD F GSGT+ AVA K++R +IGIE I
Sbjct: 470 ITLKNGKKPEALISRILEVSTQENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETI 529
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADG 320
+R+ V ++ + + L E L QIL + + D
Sbjct: 530 TKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNLEIKKQILNAKSKSECLKIFNDL 589
Query: 321 TL----ISGTELGSIH 332
+ + ++G IH
Sbjct: 590 SEHFLKRADCKIGEIH 605
>gi|240142079|ref|YP_002966589.1| putative DNA methylase N-4/N-6 [Methylobacterium extorquens AM1]
gi|240012023|gb|ACS43248.1| putative DNA methylase N-4/N-6 [Methylobacterium extorquens AM1]
Length = 440
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/287 (19%), Positives = 90/287 (31%), Gaps = 72/287 (25%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
+ S+DLI PPY + V ++ +F + + A+ +
Sbjct: 158 EAASAIEPGSLDLIMTSPPYPV----------------VNRAYGRF-TVPDWLAWMSDLV 200
Query: 90 LACRRVLKPNGTLWVIGSY------------------HNIFRIGTMLQNLNFWILNDIVW 131
+ +L GTL V I R G L W +
Sbjct: 201 GMWKELLTDRGTLCVNLMDVFQPGTPCLSPYVERFTIDAIDRHGLHLAGRMPWHSPTKLA 260
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKG---------------------------- 163
+ R R +N+ E +I S P
Sbjct: 261 NIEWAVK--RRVRLRNSVEHVILFSKDPNPNWDTRRLPREEYADRSEARLAAGRRRASTV 318
Query: 164 ----YTFNYDALKAANEDVQMRSDWLIPICSGSE---RLRNKDGEKLHPTQKPEALLSRI 216
Y N A + + + + SG+ + + G +HP + PEAL R+
Sbjct: 319 RPSGYDLNEAAFERNDNGRIPGNLLVAGGASGASTFAKRCREAGVPIHPARFPEALPRRV 378
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ +T G + DP GS T+G VA +L R FI E Y + +
Sbjct: 379 IQLTTDVGQTVYDPMAGSNTTGKVALELGRRFISSEPMLAYAEASAM 425
>gi|2314540|gb|AAD08413.1| type III restriction enzyme M protein (mod) [Helicobacter pylori
26695]
Length = 288
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G K+ KPEALL RIL STK D++LD F GSGT+ AVA K++R +IGIEM + +
Sbjct: 105 NGNKVFNNPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFE 164
Query: 259 DIATKRIAS 267
+ R+
Sbjct: 165 SVILPRLKK 173
>gi|254670016|emb|CBA04773.1| type III restriction-modification system: methylase [Neisseria
meningitidis alpha153]
Length = 349
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 58 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 112
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 113 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIV 170
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 171 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 210
>gi|154244393|ref|YP_001415351.1| DNA methylase N-4/N-6 domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154158478|gb|ABS65694.1| DNA methylase N-4/N-6 domain protein [Xanthobacter autotrophicus
Py2]
Length = 696
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 56/176 (31%), Gaps = 21/176 (11%)
Query: 23 IIKGNSISVLEKL---------PAKSVDLIFADPPYNLQLNGQLY--------RPDHSLV 65
+I G+++ + L +D I+ DPP++ + + + + S++
Sbjct: 70 LIYGDNLLAMAALIAGGSRNETLRNKIDFIYIDPPFDSKADYRTKIVLPDSEIEQNPSIL 129
Query: 66 D--AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ A +D+W +Y L R +L G++++ + + +
Sbjct: 130 EQFAYSDTW--ADGTASYLQMITPRLSLMRELLSDVGSIYIHIDRSVGPYVKVIADEIFG 187
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + + H+ +++ + + + +
Sbjct: 188 RYNFENEIIWRRTTSRGGSEYYNHVHDNILFYTKNGCGIWNQQYTPYTDGYIDGMF 243
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ T+KPE L+ R++VSST I+ D F GSGT+ AVA++L R +I ++ + I K
Sbjct: 356 YDTRKPERLIERLIVSSTNADSIVADFFVGSGTTAAVAERLGRRWIASDLGKPACMITRK 415
Query: 264 RIASVQPLG 272
R+
Sbjct: 416 RLIDQDAKP 424
>gi|218441078|ref|YP_002379407.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
gi|218173806|gb|ACK72539.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7424]
Length = 379
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 30/174 (17%)
Query: 12 NQNSIFEWKD---------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
++N E+K+ I GN++ VL++ P++S+D PPY + Q
Sbjct: 30 DKNFSDEFKNYFSHPNTTPLFILGNAVEVLKQFPSESIDCCMTSPPYWGKREYQ------ 83
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQN- 120
+ +F Y L +R+LK G+ W+ +G + + +
Sbjct: 84 ------SGGIGLEKNFHDYIKNLCLVFLEIKRILKNEGSFWLNLGDSYEQKHLLGLPWRI 137
Query: 121 -------LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + N I+W K + R +N HE + PK Y +
Sbjct: 138 ALLLTDDQGWILRNSIIWNKVKGGLDNSKDRLRNIHENVFHFVKQPKDYYYDVD 191
Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ K+H P L + ++ P I+LDPF G GT+ VA L+R IGI++ +
Sbjct: 307 DSQNRKIHFAPYPLDLCKIPISATCPPNGIVLDPFAGIGTTMVVAHLLKRKSIGIDICRH 366
Query: 257 YIDIATKR 264
Y+++A KR
Sbjct: 367 YLELAQKR 374
>gi|7465375|pir||B64710 site-specific DNA-methyltransferase (EC 2.1.1.-) HP1522 -
Helicobacter pylori (strain 26695)
Length = 627
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 23/131 (17%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ + I + ++ +IKG+++ L+ L ++ + +I+ DPPYN + +Y D
Sbjct: 74 KKNHKILKPLNESTSKHVLIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDD 133
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 134 FSQSNEEVLKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISID 193
Query: 108 YHNIFRIGTML 118
+ ++ +
Sbjct: 194 DNECAQLKLLC 204
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
N E + KP L++R++ ST GDIILD F GSGT+ +
Sbjct: 385 NSSDESIFSNPKPTKLINRLIELSTNEGDIILDFFAGSGTTAHAVLESN 433
>gi|76810832|ref|YP_333073.1| DNA methylase [Burkholderia pseudomallei 1710b]
gi|254260324|ref|ZP_04951378.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
1710a]
gi|76580285|gb|ABA49760.1| DNA methylase [Burkholderia pseudomallei 1710b]
gi|254219013|gb|EET08397.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
1710a]
Length = 378
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H PEAL+ +++ ++PGD++ DPFFGSGT+G VA++L R FIG E+ Y +
Sbjct: 306 AHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTTGQVAQRLGRRFIGCELNPAYEPLQR 365
Query: 263 KRIAS 267
R+
Sbjct: 366 DRLRQ 370
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 73/240 (30%), Gaps = 59/240 (24%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
W D+ +G+ ++ + A V I PPY + Y P
Sbjct: 1 MNWLDQSHRGDCRDLMRAMIADGVRVQTIVTSPPYW---GLRSYLPGGHPDKG--REIGS 55
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY-----------------------HNI 111
++ + CR++L +GTLW+ NI
Sbjct: 56 EATLREFIDTLVGVFELCRQLLMDDGTLWLNMGDAYASSGGQTPMRGETFAGRARAKENI 115
Query: 112 ---------------------FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+R+ LQ+ +++ DI+W K NPMP R AHE
Sbjct: 116 CLSNRKAGIDGLKVKDLMGQPWRLAFALQDAGWYLRQDIIWHKPNPMPESVRDRCTKAHE 175
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI------CSGSERLRNKDGEKLH 204
L S S + Y + + + RS +G E R K G +
Sbjct: 176 YLFLLSKSE--RYYYDFHAMQEPVSGGAHARSPGNRSHKATNAFAAGDEHHRTKSGLVAY 233
>gi|240123702|ref|ZP_04736658.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae PID332]
gi|268682334|ref|ZP_06149196.1| type III restriction/modification system modification methylase
[Neisseria gonorrhoeae PID332]
gi|268622618|gb|EEZ55018.1| type III restriction/modification system modification methylase
[Neisseria gonorrhoeae PID332]
Length = 724
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 433 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 487
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 488 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 545
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 546 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERMKK 585
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 68/211 (32%), Gaps = 19/211 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ L L V LI+ DPPY +P
Sbjct: 194 KQPVGEIKRRSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYY----FVKKKP 249
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ- 119
S + F + LL + +L +G + + + +L
Sbjct: 250 QDSFGYNTNFK------LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDE 303
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA---- 174
+ ++ + N TL++A K+ Y F D
Sbjct: 304 IFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNKDKSTFYEFPIDEDNFLEKWE 363
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+++ +G+E R E +P
Sbjct: 364 EDEIGFYKKGAPMRATGTEDKREDRPEMFYP 394
>gi|292493358|ref|YP_003528797.1| Site-specific DNA-methyltransferase (adenine-specific)
[Nitrosococcus halophilus Nc4]
gi|291581953|gb|ADE16410.1| Site-specific DNA-methyltransferase (adenine-specific)
[Nitrosococcus halophilus Nc4]
Length = 650
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 22/158 (13%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---QLYR-------------P 60
++ II+G+++ VL+ L A + V I+ DPPYN + YR
Sbjct: 100 ENLIIEGDNLEVLKLLQATYFERVKCIYIDPPYNTGNDFIYPDDYRETKTAYWKRSGAIK 159
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-Q 119
D + AVT++ + S + ++ LL R++L+ +G +++ + + + +
Sbjct: 160 DGVRLTAVTEASGRRHSN--WLNMMQSRLLLARQLLRDDGIIFISIDDNEVAHLKLLASD 217
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
V NP + + N HE L+ S
Sbjct: 218 IFGAENFIGQVTVLCNPKGRSQDKYLANCHEFLLIYSK 255
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 12/134 (8%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
W G+ I A A + N V+
Sbjct: 332 WDDGFEGCWTWGKDRARQDLDKIVARKVSGRWKIFRKAYAAEPGNAPVKKLKSIWSDKKY 391
Query: 191 GSERLRNKDG------EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+E+ + + EK+ + K L++ + +T I++D F GSGT+ ++
Sbjct: 392 HTEKGQTEFNRLFEKKEKIFQSPKSVDLIADAIRMATDEESIVMDFFAGSGTTAHAVFQV 451
Query: 245 R------RSFIGIE 252
R FI ++
Sbjct: 452 NAEDGKKRKFILVQ 465
>gi|284008244|emb|CBA74551.1| phage DNA methyltransferase [Arsenophonus nasoniae]
Length = 346
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 17 FEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD- 73
+ ++ ++ G+++ ++ LP S+DLI DPPY + SWD
Sbjct: 1 MTFSNQPILVNGDALPYVKTLPDDSIDLILTDPPY---------------YRVKSCSWDR 45
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + E Y A+ +L+ +R+LKPNG+L++ S + ++ + +LN I+W K
Sbjct: 46 QWKTTEQYLAWLDDYLVEFQRILKPNGSLYLFCSS-TLAADTEIMLRNHMKVLNHIIWAK 104
Query: 134 SNPMPNFRGRRFQNA 148
+ A
Sbjct: 105 PYGRWTGCSKESLRA 119
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP ALL I+ +S+K G + D F GSG++ A KL R IG+E++ D K
Sbjct: 267 HPCEKPAALLEHIINASSKSGHTVADFFMGSGSTVKAAIKLGRQAIGVELETDRFMQTKK 326
Query: 264 RIAS 267
I +
Sbjct: 327 EIEN 330
>gi|116513198|ref|YP_812105.1| adenine specific DNA methylase Mod [Lactococcus lactis subsp.
cremoris SK11]
gi|116108852|gb|ABJ73992.1| Adenine specific DNA methylase Mod [Lactococcus lactis subsp.
cremoris SK11]
Length = 692
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 17 FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ + IIKGN++ L + V LI+ DPPYN + LY D
Sbjct: 175 EDTDNLIIKGNNLLALHAIKDKYAGKVKLIYIDPPYNTGSDSFLYN-------------D 221
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+F + A+ F + L R L+ +G +++ + ++
Sbjct: 222 RF-NHSAWLTFMKNRLEIAREFLQEDGYIFIQTDDSEQAYLKVLM 265
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 197 NKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
NK+G+ + P +KPE LL +I+ ++ GDI+LD F GSG++ A A K+ R+FI +E +
Sbjct: 492 NKEGQVVFPNGKKPERLLGKIIEMASDEGDIVLDFFGGSGSTAAAAMKMNRTFISLEQIE 551
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGK 282
+ + + R+ +V +
Sbjct: 552 NQVQLELDRLNNVISGNDKNGLTQDVN 578
>gi|110798791|ref|YP_694818.1| type III restriction-modification system, Mod subunit [Clostridium
perfringens ATCC 13124]
gi|110673438|gb|ABG82425.1| type III restriction-modification system, Mod subunit [Clostridium
perfringens ATCC 13124]
Length = 683
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 60/173 (34%), Gaps = 19/173 (10%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---QLYRPDH 62
++E+ ++ I+G+++ VL+ L + +I+ DPPYN + + ++ D
Sbjct: 90 VSEDSKDSETTQNLYIEGDNLEVLKLLRNSYYGKIKMIYIDPPYNTENDFIYKDNFKIDK 149
Query: 63 SLVDAVTDSWDKFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ + S D+++ + L + +L +G + + +
Sbjct: 150 EKYEKLEGSIDEYNERLTASKKGSGRYHSDWMNMIYPRLKVAKDLLSDDGVILISIDDNE 209
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ + + + + +F + N E ++ S
Sbjct: 210 VVNLKKICDEIFGEENFIANLVWEKKKKGSFLAKSITNIKEHILVFSKVKDYF 262
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP L+ +I+ S K IILD F GS T+ + R FI +++
Sbjct: 426 PKPTKLIMKIIASYRKKEFIILDFFSGSATTADAVMQLNSEDNGNRKFIMVQL 478
>gi|331680930|ref|ZP_08381570.1| conserved hypothetical protein [Escherichia coli H299]
gi|331081918|gb|EGI53076.1| conserved hypothetical protein [Escherichia coli H299]
Length = 107
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
G + HPT+KP L ++ S T P I+LDPF GSG++ A + R +IGIE+ +
Sbjct: 16 WKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 75
Query: 256 DYIDIATKRIASVQPLGNI 274
Y +R+A+VQ
Sbjct: 76 QYHRAGQQRLAAVQRAMQQ 94
>gi|219883014|ref|YP_002478178.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
A6]
gi|219862020|gb|ACL42361.1| DNA methylase N-4/N-6 domain protein [Arthrobacter chlorophenolicus
A6]
Length = 374
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-DIA 261
T KPEALL R++ ++T+PGD +LD F GSGT+ AVA+KL R++IG+E+ + I D
Sbjct: 278 AFDTPKPEALLERLIAAATEPGDTVLDCFAGSGTTLAVAQKLGRNWIGVELNAETIADYI 337
Query: 262 TKRIASVQPLGN 273
RI + +
Sbjct: 338 APRIDGILSGTD 349
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 15/121 (12%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
+V + + DPPYN + +DS S + + A L R L
Sbjct: 20 GTVKMAYLDPPYNTGR----------KFNQYSDS----SPLKDWLAMLERTLTGVRDTLT 65
Query: 98 PNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
+G+++V I R+ ++ + + + +F + + ++ +
Sbjct: 66 EDGSIFVHLDDQYIHRVRCIMDDVFGDRNYVGTMIWEKKNRGSFLHAHLADVTDHILIYA 125
Query: 157 P 157
Sbjct: 126 K 126
>gi|163797566|ref|ZP_02191516.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
gi|159177165|gb|EDP61725.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
Length = 439
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/250 (16%), Positives = 78/250 (31%), Gaps = 29/250 (11%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKF 75
+++ G+S + +L + DPPY + +G + + +WD
Sbjct: 176 HRLLCGDSTKPEDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDS 234
Query: 76 -SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ YD F A + + + + + + + ++ I+W K
Sbjct: 235 SQGSDLYDGFIAAAVAEA---ITEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 291
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + HE P E+ + L
Sbjct: 292 RGV--LTRSHYLWKHEPCFMGWRRPNRPPKVA---------EETLASTWPLPSFA----- 335
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
KD HPT KP + G + +PF GSG+ + R +E+
Sbjct: 336 ---KDDRPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEIS 392
Query: 255 QDYIDIATKR 264
Y+D+A +R
Sbjct: 393 PAYVDVAVER 402
>gi|282901316|ref|ZP_06309242.1| DNA modification methylase [Cylindrospermopsis raciborskii CS-505]
gi|281193811|gb|EFA68782.1| DNA modification methylase [Cylindrospermopsis raciborskii CS-505]
Length = 348
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/211 (22%), Positives = 72/211 (34%), Gaps = 22/211 (10%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ IN I +K+KII G+++SVL+++ + DLI PPY Q N
Sbjct: 1 MLINMPLQEISHFKNKIIFGDNLSVLKQIENDTFDLIITSPPYFQQRNYGNG-------- 52
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN------ 120
S+ Y C RVLK G + I +++
Sbjct: 53 --DLEIGNESTEAEYLNNILTVFQECVRVLKSTGAIVFNLGDKYINGSLSLIPYKFAIQA 110
Query: 121 ---LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
N +++N I W K NP P ++ A E + +K Y FN D +
Sbjct: 111 TENNNIFLINQITWSKLNPTPRQDKKKLIQATEPFFIFAK---SKDYYFNLDNYLQHLDT 167
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
+ G + L QK
Sbjct: 168 FNKTAKTKPSDKLGKKYLELIKNSDSSAEQK 198
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
HP P ++ ++ +K GD +LDPF GSGT+ AK L R ++GIE+ DY+++
Sbjct: 272 NNHHPAVYPLYIIQELIKLLSKEGDFVLDPFCGSGTTCLAAKNLNRHYLGIEINPDYVNL 331
Query: 261 ATKRIASVQPLGNI 274
A R+A
Sbjct: 332 ANSRMAESNFQQQE 345
>gi|237713118|ref|ZP_04543599.1| methyltransferase [Bacteroides sp. D1]
gi|237722738|ref|ZP_04553219.1| methyltransferase [Bacteroides sp. 2_2_4]
gi|262409491|ref|ZP_06086033.1| methyltransferase [Bacteroides sp. 2_1_22]
gi|229446776|gb|EEO52567.1| methyltransferase [Bacteroides sp. D1]
gi|229448548|gb|EEO54339.1| methyltransferase [Bacteroides sp. 2_2_4]
gi|262352703|gb|EEZ01801.1| methyltransferase [Bacteroides sp. 2_1_22]
Length = 610
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+G+++ L L +D+I+ DPPYN +Y D + D D +
Sbjct: 74 HILIEGDNLEALTSLAYTHEGKIDVIYIDPPYNTGNKDFVY------NDCIVDKEDSYR- 126
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ +F L +++L G +++ + ++ + + +
Sbjct: 127 HSKWLSFMNKRLRIAKQLLSDRGVIFISIDDNEQAQLKLLCDEVFGNNNFITNIIWQSTA 186
Query: 138 PNFRGRRFQNAHETLIWAS 156
+ G E ++ +
Sbjct: 187 GSNTGNEIVTTTEYVLVYT 205
Score = 39.6 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 13/151 (8%)
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
W + + N +N +E ++ K D + +
Sbjct: 278 WNYLWSKTKVQWGLDNDFIVFKKNKNEWAVYCKRYQKVDNSNRQVDRTTPY---RNLITS 334
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS--TKPGDIILDPFFGSGTSGAVA 241
L G+ + N + KP + +L S+ T P ++LD F GSGT+
Sbjct: 335 DLFNTAQGTAEIANIFAIRPFAFPKPSTFVKFLLSSAVVTSPNAMVLDFFAGSGTTLHAT 394
Query: 242 KKLR------RSFIGIEMKQDYI--DIATKR 264
+L R I + ++ I ++ +R
Sbjct: 395 MQLNAEDGGHRKCILVTNNENNICEEVTYER 425
>gi|194173088|ref|YP_002003732.1| putative adenine methyltransferase [Escherichia phage rv5]
gi|114796126|gb|ABI79300.1| putative adenine methyltransferase [Escherichia phage rv5]
Length = 441
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
+N IF+ +K+I G+++ L+ L A V ++ DPP+N +
Sbjct: 39 ENDIFD--NKLIFGDNLLALKALEQEYAGKVKCVYIDPPFNTGRAFE------------- 83
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+D + R L R +L +G ++V + + ++
Sbjct: 84 -HYDDSLEHSVWLGLMRDRLEIIRNLLSDDGVIFVHLDDCEMAYLKVLM 131
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
W +G + N+ G +KPEALL RIL T+ GD++LD F GSGT+ AVA
Sbjct: 320 DVWTDISWNG---IANEGGVSFKNGKKPEALLKRILEMCTREGDLVLDSFGGSGTTAAVA 376
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
K++R +I IE+ R+ V +
Sbjct: 377 HKMKRRWILIELGDHCHTHIIPRLQKVIDGEDQ 409
>gi|217032420|ref|ZP_03437914.1| hypothetical protein HPB128_164g20 [Helicobacter pylori B128]
gi|216945899|gb|EEC24517.1| hypothetical protein HPB128_164g20 [Helicobacter pylori B128]
Length = 355
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 49/76 (64%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E L +G KL T KPEAL+SRIL +T+ D++LD F GSGT+ AVA KL+R +IGI
Sbjct: 165 KEILALFNGTKLFDTPKPEALISRILEIATQENDLVLDFFAGSGTTCAVAHKLKRKYIGI 224
Query: 252 EMKQDYIDIATKRIAS 267
EM + + + R+
Sbjct: 225 EMGEHFDSVILPRLKK 240
>gi|47459296|ref|YP_016158.1| type III restriction-modification system methylase [Mycoplasma
mobile 163K]
gi|47458626|gb|AAT27947.1| type III restriction-modification system methylase [Mycoplasma
mobile 163K]
Length = 549
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 78/235 (33%), Gaps = 29/235 (12%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNL------QLNGQLYRPDHSL 64
N I ++K+I G++ + L+ L +++I+ DPPYN + + +
Sbjct: 82 NEIQNDENKLIIGDNYNALKSLKITHKGKINIIYIDPPYNTESALKDGNSSSKEKITSTS 141
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
A D + + + L+ + +L G ++V + ++ N+
Sbjct: 142 KFAYKDKFGRGG----WLNMINERLILAKDLLTDEGLIFVSIDDSEQAYLKVLMDNIFG- 196
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNA-----HETLIWASPSPKA--------KGYTFNYDAL 171
D + + N +GR+ N+ +E ++ S + + Y
Sbjct: 197 --EDNFVNQIAWVSNKKGRQISNSLLAKTYEYILIYSKNSDKEFKFNKLDQEYAKKIMPS 254
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
D ++ D +E + T+K I+ + D
Sbjct: 255 IYEKTDYEIMRDEYGEFVIKNELHNSNIKAFNINTRKNLFFPLFIIENEIFTNDT 309
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 11/165 (6%)
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + + +N+ + L + + K YT D + + S + SE
Sbjct: 327 QGVWRWSKEKIENSKQDLYIDEKNNQIKIYTKIRDMSIFPKD--VILSPKISTKSGTSEF 384
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSF 248
L+ + EK KP LL ++ S I+LD F GSGT+G + R+F
Sbjct: 385 LQIFEEEK-FQYPKPVELLKFLIKISGNKNSIVLDFFAGSGTTGQAVLELNKEDGGNRNF 443
Query: 249 IGIEMKQDYI--DIATKRIASVQPLGNIELTVLTGKRTEPRVAFN 291
I ++ I +I+ +R+ + + + +
Sbjct: 444 ILCTNNENNIAEEISYERLFRIITGKTTDGNKKFKWLDKNEPFYG 488
>gi|320089235|emb|CBY98988.1| K07319 putative adenine-specific DNA-methyltransferase [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 145
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
G + HPT+KP L ++ S T PG I+LDPF GSG++ A + R +IGIE+ +
Sbjct: 56 WKYSGNRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLE 115
Query: 256 DYIDIATKRIASVQPLGN 273
Y +R+A+V+
Sbjct: 116 RYHRAGQQRLAAVRRAMQ 133
>gi|327253801|gb|EGE65430.1| DNA methylase [Escherichia coli STEC_7v]
Length = 162
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+I + + ++ LP SVDLI DPPY + + W + Y
Sbjct: 12 LINADFLEFIQTLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ L VLKP G+L++ H + ++ F +LN I+W K + N
Sbjct: 58 KWLDQCLAQFWWVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHIIWAKPSGRWNGCN 116
Query: 143 RRFQNAHE 150
+ A+
Sbjct: 117 KESLRAYF 124
>gi|148656308|ref|YP_001276513.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
RS-1]
gi|148568418|gb|ABQ90563.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
Length = 348
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 5/185 (2%)
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
LL+ + L+ + Y G + + D +W P R ++ N
Sbjct: 144 LLSLKEWLRNEWERTGLPMYKTNEACGVINAASRKYFTRDHLWYAPPPEIFERMVKYANK 203
Query: 149 HET---LIWASPSPKAKGYTFNYDALKAANEDVQ-MRSDWLIPICSGSERLRNK-DGEKL 203
+ + S K Y + + + + W P ERLR + G+
Sbjct: 204 YGNPKGRPYFSFDGKRPANQDEYKRIFPTFKGRYGVTNVWNHPPLHNEERLRIRGSGKYA 263
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
H QKP L+ I+ +S+ PGD+I +PF G T+G V+ + R E+ + +A
Sbjct: 264 HLNQKPIKLIELIIEASSNPGDVIWEPFGGLCTAGLVSCLMSRIAYCAEIDEHIFKMAVS 323
Query: 264 RIASV 268
R+
Sbjct: 324 RMEEQ 328
>gi|298737029|ref|YP_003729559.1| modification methylase KpnI [Helicobacter pylori B8]
gi|298356223|emb|CBI67095.1| Modification methylase KpnI [Helicobacter pylori B8]
Length = 371
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 49/76 (64%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E L +G KL T KPEAL+SRIL +T+ D++LD F GSGT+ AVA KL+R +IGI
Sbjct: 181 KEILALFNGTKLFDTPKPEALISRILEIATQENDLVLDFFAGSGTTCAVAHKLKRKYIGI 240
Query: 252 EMKQDYIDIATKRIAS 267
EM + + + R+
Sbjct: 241 EMGEHFDSVILPRLKK 256
>gi|261838682|gb|ACX98448.1| type III restriction enzyme M protein [Helicobacter pylori 51]
Length = 645
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 22/277 (7%)
Query: 43 IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
I+ DP + + + + + DK + D R
Sbjct: 322 IYIDP----KTKKRETLLNFLKNEYENITKDKIIALYNDDKDFRD--------------- 362
Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
++ + +NI++ + N NF + + + F+N++ + A
Sbjct: 363 FIHKNANNIYQDAMIEVNFNFTKEQESSLNNGEIVEYNQYLIFKNSNNIIRQFLKLSDAI 422
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
G T ++DA ++R DW + + +KPE L+ IL ST
Sbjct: 423 GETDDFDAKIGL---RKIRGDWWGGFYKDMMNINKEANLVWKAGKKPERLIRDILEISTN 479
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
D++LD F GSGT+ AVA K++R +IGIE I +R+ V ++
Sbjct: 480 ENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDF 539
Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+ + L E L QIL + + D
Sbjct: 540 KGGGSFVYAELKEVNLEVKKQILNAKSKSECLKIFND 576
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 168 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 213
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
++ F + L R L +G ++V + + ++
Sbjct: 214 HSSWLVFMKNRLEVAREFLSDDGVIFVQCDDNEQAYLKVLM 254
>gi|317049517|ref|YP_004117165.1| DNA methylase N-4/N-6 domain-containing protein [Pantoea sp. At-9b]
gi|316951134|gb|ADU70609.1| DNA methylase N-4/N-6 domain protein [Pantoea sp. At-9b]
Length = 391
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 21/152 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+++ VL +LP+ S+D I PPY + + +
Sbjct: 61 LLMCGDALDVLAQLPSDSIDFIMTSPPYWGKREYE------------NGGIGLEVDPMDF 108
Query: 82 DAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQ--------NLNFWILNDIVWR 132
L +RVLKP G+ W+ +G + + + N + + N ++W
Sbjct: 109 VRNLAEICLQIKRVLKPTGSFWLNLGDTYKDKALLGLPWRVAFELTDNQGWILRNSVIWN 168
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
K + R N HE + K Y
Sbjct: 169 KLKGGMDNSADRLGNVHENIFHFVKKNKGYYY 200
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K H P L ++++ I LDPF G+G++ A +L R +GI++ + Y+ +
Sbjct: 323 RKSHFAAYPLDLCRIPILATCPENGIALDPFSGTGSTLIAAYELGRKSVGIDISERYLKL 382
Query: 261 ATKRIA 266
T+R
Sbjct: 383 TTERFK 388
>gi|306823148|ref|ZP_07456524.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|309801507|ref|ZP_07695632.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
JCVIHMP022]
gi|304553780|gb|EFM41691.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium ATCC
27679]
gi|308221819|gb|EFO78106.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium dentium
JCVIHMP022]
Length = 294
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/285 (14%), Positives = 85/285 (29%), Gaps = 47/285 (16%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD---SWD 73
+W + G+S + +L SVDL + PP+ S + +D
Sbjct: 15 KDW--TLWLGDSCVRMGELDDNSVDLSVSSPPF-------------SSLYVYSDSIRDLG 59
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI---------------------------- 105
+ + + +L R+ KP V
Sbjct: 60 NNPTRKDFIENYGYVILELLRITKPGRLACVHVQQVATTKTADGVVGLTDFRGDVIKAYV 119
Query: 106 -GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ + I + L+
Sbjct: 120 DNGWIFHGEVTVNKNPQAQAIRTKAQALMFVTKNKDSSMSRPALADYLLLFRKPGDNAVP 179
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
N + + + + + + +ERL +D ++ H + + R + + G
Sbjct: 180 IKNDVSNEEWIKWAEPVWWDIRETDTLNERLGREDTDERHICPLQLSFIERCIRLWSNKG 239
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+++ DPF G G++ A KL R + IE+K Y + + + +++
Sbjct: 240 ELVFDPFGGIGSTVYEAIKLGRRGLSIELKPSYWKASVELMRNLE 284
>gi|221369905|ref|YP_002521001.1| DNA methylase N-4/N-6 [Rhodobacter sphaeroides KD131]
gi|221162957|gb|ACM03928.1| DNA methylase N-4/N-6 [Rhodobacter sphaeroides KD131]
Length = 120
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R++D + +H TQKP + R +++++ PG I +PF GSGT+ A+ R +G+E+
Sbjct: 24 RDQDADTVHGTQKPVECMRRPILNNSSPGQAIYEPFMGSGTTLIAAETTGRVCLGVELNP 83
Query: 256 DYIDIATKR 264
Y+D+A +R
Sbjct: 84 AYVDVAIER 92
>gi|295100452|emb|CBK97997.1| Adenine specific DNA methylase Mod [Faecalibacterium prausnitzii
L2-6]
Length = 700
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 11/189 (5%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+ ++ + +L+ L A VD I+ DPPYN Y D DS D +
Sbjct: 129 HTLIEADNYHALQLLDYLYAGKVDCIYIDPPYNTGAKDWKYNND------YVDSADTYR- 181
Query: 78 FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ +F + L +++L P + L V +G +L+ + +V NP
Sbjct: 182 HSKWLSFMQRRLQLAKKLLNPADSVLIVTIDEKEYLHLGCLLEEIFPEANMQMVSSVINP 241
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
R F E + D + D + + +R
Sbjct: 242 AGVSRHGAFARVDEYIYIIRIGTSEAQRVNLSDEWRIRPNDKRATMLRWNTLIRTGTNVR 301
Query: 197 NKDGEKLHP 205
D + L
Sbjct: 302 RSDRKNLFY 310
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS--TKPGDIILDPFFGS 234
Q R +G++ L + GEK K + + KP +I+D F GS
Sbjct: 424 GTQWRISSHDATLNGTKLLNSIIGEKRFTFPKSLYAVHDTIRFFVANKPNALIVDFFAGS 483
Query: 235 GTSGAVAKKLR------RSFIGIEMKQDYIDIATK 263
GT+ L R I + + D A
Sbjct: 484 GTTMHAVNLLNAEDGGHRRCIMVTNNEVSADEAKM 518
>gi|258624188|ref|ZP_05719138.1| DNA methylase [Vibrio mimicus VM603]
gi|258583619|gb|EEW08418.1| DNA methylase [Vibrio mimicus VM603]
Length = 414
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 82/276 (29%), Gaps = 40/276 (14%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYN--LQLNG--------------------QLYRPD 61
+ ++ S L + V L PP+ +Q + P
Sbjct: 114 VWSDNKSFFSDL-DEPVHLCVTSPPFPLRIQRGYGNVDEAKWVDFITLALEPIVKNLVPG 172
Query: 62 HSLVDAVTDS--WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
S+V V++ K S Y L + + W+ S +
Sbjct: 173 GSVVLNVSNDIFEAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWACVN 232
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRR------FQNAHETLI-----WASPSPKAKGYTFNY 168
+ V+ +N R H+ L+ S Y
Sbjct: 233 RYQLCAGWEPVYWFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDSRVVSYGDGAYRLRG 292
Query: 169 DALKAANEDVQMRSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
+A E ++ R+ + G HP P + + T+ G
Sbjct: 293 NAFSNVTEGRIPKNVIQRGHRCADTLELRRMARELGLPPHPAMFPTDIPEMAIRFLTEEG 352
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
D+++DPF GS SG A++ R +I ++ +YI
Sbjct: 353 DLVVDPFSGSNKSGLAAERNNRRWIACDIILEYIRT 388
>gi|317011742|gb|ADU85489.1| modification methylase KpnI [Helicobacter pylori SouthAfrica7]
Length = 360
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG---SERLRNKDGEKLHP 205
H S YD +K A + ++ R+ + + E L +G KL
Sbjct: 124 HIFWQENSKGRLTPYEVIYYDEIKNAKKVIKTRTIFTEYGTTTEATKEILALFNGTKLFD 183
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T KPEALL RIL STK D++ D F GSGT+ AVA KL+R +IGIEM + + + R+
Sbjct: 184 TPKPEALLQRILEISTKENDLVCDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILPRL 243
Query: 266 AS 267
Sbjct: 244 KK 245
>gi|127450|sp|P14827|MTEC_ENTCL RecName: Full=Modification methylase EcaI; Short=M.EcaI; AltName:
Full=Adenine-specific methyltransferase EcaI
gi|41315|emb|CAA34968.1| unnamed protein product [Enterobacter cloacae]
Length = 452
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 11/149 (7%)
Query: 21 DKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ I ++ L +L K LI+ DPPY + +H ++D +
Sbjct: 72 NSFIWSDNSLALNRLMVEGKKAKLIYLDPPYATGMGFSSRSNEH--------AYDDCLTE 123
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPM 137
AY F R L+ R +L +GT++V + + + +L +++ R+
Sbjct: 124 AAYLEFMRRRLILMREILDDDGTIYVHIGHQMLGELKCLLDEIFGRERFINLITRRKCSS 183
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTF 166
N F N ++ ++ S K
Sbjct: 184 KNSTKNNFANLNDYILCYSKGKKYIWNRP 212
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
T N +D + + +PT+K ++ I+ +S
Sbjct: 281 HWSKTGNPRRKVYLTDDKSIGYTDYWEEFRDAH--HQSILVTGYPTEKNFNMMKLIVGAS 338
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
+ PGD+++DPF GSG++ A L+R +IGI+ KR A + +
Sbjct: 339 SNPGDLVIDPFCGSGSTLHAASLLQRKWIGIDESLFAAKTVMKRFAIGRAPMGDYVNTSL 398
Query: 281 GKRTE 285
K+TE
Sbjct: 399 NKQTE 403
>gi|257067738|ref|YP_003153993.1| adenine specific DNA methylase Mod [Brachybacterium faecium DSM
4810]
gi|256558556|gb|ACU84403.1| adenine specific DNA methylase Mod [Brachybacterium faecium DSM
4810]
Length = 646
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 21/129 (16%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---QLYRPDHSL 64
+N K+ I+G+++ VL+ L + LI+ DPPYN + YR
Sbjct: 79 KNSKDWDTTKNVFIEGDNLEVLKILQKHYHAKIKLIYIDPPYNTGKDFVYPDNYREGLQT 138
Query: 65 VDAVTD---SWDKFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
T K S A+ + L R +L +G + + +
Sbjct: 139 YLEYTGQLSEEGKPKSSNAKNSAENPQYHSAWLSMMYPRLKLARNLLTEDGVILISINDV 198
Query: 110 NIFRIGTML 118
++ +
Sbjct: 199 EQAQLRRLC 207
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 204 HPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLRRS 247
KP L+ ++ TKP + ++LD F GS T+
Sbjct: 406 FSYPKPVGLIEYLVSVFTKPKEEAVVLDFFSGSATTAHAVMAANLR 451
>gi|325978228|ref|YP_004287944.1| type III restriction-modification system methylation subunit
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|325178156|emb|CBZ48200.1| type III restriction-modification system methylation subunit
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
Length = 650
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 28/209 (13%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
+Q ++ N + E + IIKGN++ L + +S+D I+ DPPYN+ + +
Sbjct: 169 AQHSTAVDNGIVSFDKEKDNLIIKGNNLLALHTIQEIYSESLDCIYIDPPYNVPSSNNSF 228
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTM 117
++ + + F + L + +L K +G L V + + +G +
Sbjct: 229 TYNNK------------FNHSTWLTFMKNRLEVAKTLLRKEDGVLIVAIDENEVNYLGVL 276
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQN-AHETLIWASPSPKAKGYTFNYDALKAANE 176
L + ++ + N RG + N ++ PK K N +E
Sbjct: 277 LDEIFDECEKHLITV----VHNPRGVQGTNFSYSNEFLYFVFPKGKKLIENRR----LSE 328
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHP 205
D S+ G E LR P
Sbjct: 329 DEISLSNLRN---WGGESLRGDGKNTFFP 354
>gi|294648625|ref|ZP_06726088.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|292825501|gb|EFF84241.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 258
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 22/153 (14%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L A V LI+ DPPYN + + + +++ +
Sbjct: 112 NLLIKGNNLLALYSLRERLAGKVKLIYIDPPYNTESD--------------SFTYNDSFN 157
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
++ F + L R +LK G ++V + + ++ + + K
Sbjct: 158 HSSWLTFMKNRLEVARDLLKEEGVIFVQCDDNEQAYLKVLMDEIFGRSNFLNQISVKMKQ 217
Query: 137 MPNFRG----RRFQNAHETLIWASPSPKAKGYT 165
G ++ + E +I + + + Y
Sbjct: 218 TSGASGGGEDKKLKKNIEYIIIYTKNIDPRQYC 250
>gi|217034539|ref|ZP_03439949.1| hypothetical protein HP9810_897g24 [Helicobacter pylori 98-10]
gi|216943020|gb|EEC22501.1| hypothetical protein HP9810_897g24 [Helicobacter pylori 98-10]
Length = 637
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 165 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 210
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L R L +G ++V + + ++ + +
Sbjct: 211 HSSWLVFMKNRLEIAREFLSDDGVIFVQCDDNEQAYLKVLMDEIFLRENFVNCIAILSST 270
Query: 138 PNFRGRRFQNAH 149
P+ +N
Sbjct: 271 PSGVKTAHRNKT 282
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 2/216 (0%)
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
LK + N L + + S N +
Sbjct: 339 LYEKLKATQNYLNNKDFCNFIYSNADKIFQTGKSLPEHIRAISLKTENKDIPIKYESDTG 398
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS--ERLRNKDGEKLHPTQKP 209
+ +A + + + ++ ++ Q + L + +N+ +KP
Sbjct: 399 IQYAYNGRRMSFLSRSIHSVLSSQGIEQKIAILLCDFWNDIDFNNTQNEGLISFPSGKKP 458
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E L+ RIL +T+ D++LD F GSGT+ AVA K++R +IGIE I +R+ V
Sbjct: 459 EQLIYRILDMATQENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVI 518
Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
++ + + L E L QIL
Sbjct: 519 EGEQGGISKKCDFKGGGSFVYAELKEVNLEIKKQIL 554
>gi|124009615|ref|ZP_01694288.1| DNA methylase [Microscilla marina ATCC 23134]
gi|123984756|gb|EAY24736.1| DNA methylase [Microscilla marina ATCC 23134]
Length = 322
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
D +HPT KP +L+ ++ T +LDPF GSG++G A L+R+F G E+ DY
Sbjct: 250 DDYNIHPTLKPVSLMQHLVKLLTFEQQTVLDPFAGSGSTGVAALNLQRNFTGFELSPDYA 309
Query: 259 DIATKRIASVQ 269
IA KR+ +VQ
Sbjct: 310 KIAQKRLKAVQ 320
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 24/207 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI + + L + +S+D + DPPY + WDK +
Sbjct: 7 KIFNKDCV-GLSGVAPQSIDALVTDPPYGIGFQ--------------AHEWDKSLPNK-- 49
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
C RV+KP V + + R+ L++ F I + + W N MP R
Sbjct: 50 -----QIWSDCLRVMKPGAFGLVFSAVRLMHRLMVDLEDNGFIIKDVLFWVYLNGMPKSR 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
N + L S Y Y A + + + P S ++ + G
Sbjct: 105 -NVGLNIDKKLGVDSKIVGKYTYMQGYKKGGADSYTNPQQKNKYKPSSSLGKKY-DGAGL 162
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIIL 228
+ P +P L+ + L + ++
Sbjct: 163 GIKPAYEPIILIQKPLEKGLNVAENVI 189
>gi|237750020|ref|ZP_04580500.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
gi|229374431|gb|EEO24822.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
Length = 893
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 21/199 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
S++ I + I + ++IK ++ L L VDLI+ DPPYN N
Sbjct: 395 FSKEIKYKILSVFDDIESILNGELIKADNFQALNSLMPKYQNKVDLIYIDPPYNTSNNDF 454
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+Y DKF + ++ + L R L+ +G++++ + R+
Sbjct: 455 VY-------------MDKF-NHASWLSMIANRLELAREFLQDSGSIFISIDDNEQARLKI 500
Query: 117 MLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT--FNYDALKA 173
+ + + + + F +HE ++ + + D
Sbjct: 501 LCDSIFSEDNFISNGIYEKVKIRKNSAQYFSESHEHILIFARNRDIWKRKLLPRKDLKGY 560
Query: 174 ANEDVQMRSDWLIPICSGS 192
N D R W+ +
Sbjct: 561 KNPDNDPRGVWIPIPIHAN 579
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 4/160 (2%)
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
H + + + NF+ +N + W + + F
Sbjct: 580 HYYDADYKITKPNGVILEKPKNQSWRLSEENFKKHIKENR---IWWGNGNGYPMIKRFLS 636
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + D +G + L++ D K+ KPE L+ +I + II
Sbjct: 637 EVQEGLVPRTIFYYDETGGNPAGDKALKDTFDNLKVFENPKPEGLIQQIAEIGSNENSII 696
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD F GSGTS A A+KL R ++GIEM + + + R+
Sbjct: 697 LDFFAGSGTSVATAQKLGRKWLGIEMGEHFYKVILPRLKK 736
>gi|238024955|ref|YP_002909187.1| DNA methyltransferase [Burkholderia glumae BGR1]
gi|237879620|gb|ACR31952.1| DNA methyltransferase [Burkholderia glumae BGR1]
Length = 380
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 21/152 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G++++VL+ LP + +D PPY + + + + +
Sbjct: 50 LLLNGDALNVLQALPDECIDCAMTSPPYWGKREYE------------NGGIGLEADYRDF 97
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNI--------FRIGTML-QNLNFWILNDIVWR 132
A L +RVLKP G+ W+ +R+ L N + + N +VW
Sbjct: 98 VRDLAAIFLELKRVLKPTGSFWLNLGDTYDGKGLLGIPWRVAFELTDNQGWTMRNSVVWN 157
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
K + R N HE L K Y
Sbjct: 158 KLKGGMDNSKDRLANVHENLFHFVKKAKGYYY 189
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
H P L R L+++ P ++LDPF G+GT+ A+++ IGI++ + Y++++ +
Sbjct: 315 HFAPYPVDLCRRPLLATCPPRGVVLDPFCGTGTTLLAARQIGLKSIGIDISRQYLELSQE 374
Query: 264 RIA 266
R
Sbjct: 375 RCN 377
>gi|319757915|gb|ADV69857.1| hypothetical protein SSUJS14_0770 [Streptococcus suis JS14]
Length = 133
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 21/114 (18%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I G+++ VL+ L +D+I+ DPPYN + +
Sbjct: 17 EESVDFDKSENVFITGDNLEVLKVLQESYLGKIDMIYIDPPYNTGKDFVYSDKFQMSEEE 76
Query: 68 VTDSWDKFSS------------------FEAYDAFTRAWLLACRRVLKPNGTLW 103
+ D D + + L+ R +LK +G ++
Sbjct: 77 LADEMDLRDEDGLQRVGLTKNEKSSARYHSDWLNMMYSRLVLARNLLKDSGVIF 130
>gi|240125893|ref|ZP_04738779.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae SK-92-679]
Length = 503
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 212 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 266
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 267 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 324
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 325 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERMKK 364
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 16/175 (9%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
V LI+ DPPY +P S + F + LL + +L
Sbjct: 9 KGKVKLIYIDPPYY----FVKKKPQDSFGYNTNFK------LSTWLTFMKNRLLIAKELL 58
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+G + + + +L + ++ + N TL++
Sbjct: 59 TDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVF 118
Query: 155 ASPSPKAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
A K+ Y F D +++ +G+E R E +P
Sbjct: 119 AKNKDKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYP 173
>gi|167908523|ref|ZP_02495728.1| phage-encoded modification methylase [Burkholderia pseudomallei
NCTC 13177]
Length = 112
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVTDSWDKFSSF 78
+++++ LP S+D++F DPPY+ R + TD
Sbjct: 2 DALTLARMLPDASIDMVFTDPPYSSGGLHTSARSRPPSTKYINSGTKTVYTDFESDNMDQ 61
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
A+ + AWL CRR LKP G L + + +
Sbjct: 62 RAWAFWCHAWLSECRRALKPGGLLVSFIDWRQLPTL 97
>gi|330895400|gb|EGH27738.1| type III restriction-modification system methyltransferase,
putative [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 402
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 24/182 (13%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKL------PAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+ I + + G+ + VLE L + L++ DPP+N Q++ + YR +
Sbjct: 44 NHPIDSQTNVLAIGDGLDVLEALRQRTSVLDGGIRLVYIDPPFNTQVDFRQYRDTMNR-- 101
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
+ + R L+A R +L + ++WV + R ++ +
Sbjct: 102 ------------SMWLSMMRDRLIAIRPLLANDASIWVHLDDSEVHRARAVMDEVFGETA 149
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWAS----PSPKAKGYTFNYDALKAANEDVQMRS 182
F + H+T++ + K D N+D R
Sbjct: 150 FVTSVIWQKKTTRDSRAAFSSNHDTILVYAPSGPKKWKTTRNLLVKDNAHLLNKDDDPRG 209
Query: 183 DW 184
W
Sbjct: 210 PW 211
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+++ T KPE LL RI+ ++ PG++++D F GSGT+ AVA K+ R ++ E +
Sbjct: 309 PDKEVFDTPKPELLLERIIHIASNPGELVVDIFGGSGTTAAVAHKMGRRWVVAERNAQTV 368
Query: 259 -DIATKRIASVQPLGN 273
D R+ V +
Sbjct: 369 LDFMVPRLTHVVNGTD 384
>gi|254448305|ref|ZP_05061767.1| adenine specific DNA methylase Mod [gamma proteobacterium HTCC5015]
gi|198262172|gb|EDY86455.1| adenine specific DNA methylase Mod [gamma proteobacterium HTCC5015]
Length = 706
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 11/140 (7%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G + LE L VD I+ DPPYN Y D + D +
Sbjct: 140 HTVINGENFHALEALTYTHRGKVDAIYIDPPYNSGAKDWKYNND------YVEKEDLYR- 192
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ AF L + +L PN ++ V R+G +L+ L D+V NP
Sbjct: 193 HSKWLAFMERRLKVAKELLNPNNSILIVAIDDKEYARLGLLLEQLFPEARIDMVTTVINP 252
Query: 137 MPNFRGRRFQNAHETLIWAS 156
+R +F + + + + +
Sbjct: 253 RGKYRAGQFARSEDYIYFVA 272
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS--TKPGDIILDPFFGSGTSGAVAK 242
G+E +++ GEK P K + L P I+LD F GSGT+
Sbjct: 443 HNAEVYGTELVKDLLGEKSFPYPKSLYAVEDCLRLFIGDNPKAIVLDFFSGSGTTAHAVM 502
Query: 243 KLR------RSFIGIEMK 254
+L R I +
Sbjct: 503 RLNKQDSGARQCICVTNN 520
>gi|147677858|ref|YP_001212073.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
SI]
gi|146273955|dbj|BAF59704.1| adenine specific DNA methylase Mod [Pelotomaculum thermopropionicum
SI]
Length = 697
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 10/198 (5%)
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ Y +T ++ + P+G + I + Q + D P
Sbjct: 225 NKQYTEYTEEYINDFYKYYTPDGRRYRISDF------TQAGQGPGAYFGKDGKSNYIEPP 278
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
Q + + +R W G +
Sbjct: 279 AGKHWIWGQEKITKGVNTGKIILSSNNVPGLIRYLDEMPGNPVRDIWTDINAMGP----S 334
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ + TQKPE LL RI+ +S+ G ++ D F GSG + AVA KL R FI ++ +
Sbjct: 335 SNEATDYTTQKPEVLLERIIKASSNEGMLVADFFGGSGVTAAVANKLGRRFIHCDIGINS 394
Query: 258 IDIATKRIASVQPLGNIE 275
I R+ + + +I
Sbjct: 395 IQTTRDRLIADKAEFDIY 412
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 36/205 (17%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY---RPDHSLVDA-------- 67
+ +I+G IS L + VDL++ DPP+ + R + + +A
Sbjct: 60 NMLIRGECISACAYLKEQGIEVDLVYIDPPFASGADYAKKVYIRRNPKVAEAIARAEQEL 119
Query: 68 ------------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D W K E Y + L+A + V+ +++V +H +
Sbjct: 120 DIEELRAFEEKMYGDIWRK----EDYLNWMYENLMAIKSVMSEMASIYVHLDWHIGHYVK 175
Query: 116 TMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
++ + + + P + +F N H+T+++ Y FN +
Sbjct: 176 ILMDEVFGEDNFINEIIWQKTTSPKAQSGKFSNVHDTILFYKK---GNEYIFNKQYTEYT 232
Query: 175 NEDVQMRSDWLIPICSGSERLRNKD 199
E +D+ R R D
Sbjct: 233 EE---YINDFYKYYTPDGRRYRISD 254
>gi|240080531|ref|ZP_04725074.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae FA19]
Length = 492
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 201 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 255
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 256 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 313
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 314 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERMKK 353
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 16/171 (9%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
LI+ DPPY +P S + F + LL + +L +G
Sbjct: 2 KLIYIDPPYY----FVKKKPQDSFGYNTNFK------LSTWLTFMKNRLLIAKELLTDDG 51
Query: 101 TLWVIGSYHNIFRIGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + + +L + ++ + N TL++A
Sbjct: 52 IIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNK 111
Query: 159 PKAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
K+ Y F D +++ +G+E R E +P
Sbjct: 112 DKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYP 162
>gi|163785231|ref|ZP_02179904.1| type II restriction-modification system methylation subunit
[Hydrogenivirga sp. 128-5-R1-1]
gi|159879499|gb|EDP73330.1| type II restriction-modification system methylation subunit
[Hydrogenivirga sp. 128-5-R1-1]
Length = 306
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/250 (16%), Positives = 91/250 (36%), Gaps = 17/250 (6%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F R+ + +++ + + +G+++ + P
Sbjct: 6 DQFARSVIYGRYKIIPLHAEIIAQCEDIGFDYMGSIIWQKKTTMNTTGGANVMGSYPYPP 65
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ +E ++ K+K +++ +G+ ++
Sbjct: 66 NGMVEIDYEHILIFKKPGKSKKIEKEVKEKSKLSKEEWKEYFSGHWNFAGARQI------ 119
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
H PE L RI+ + G+ +LDPF GSGT+ VA +L R+ +G E+ ++++D+
Sbjct: 120 -EHQAMFPEELPKRIIKMFSFVGETVLDPFLGSGTTAKVAVELGRNAVGYEVNENFLDVI 178
Query: 262 TKRI-----ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISAT- 315
K+I +++ + V + P++ V I+P ++
Sbjct: 179 IKKIDNNSNKNIEIIKRDFPIVPEDIKYTPKIKNANPV----IEPEKLKFGKSKTYKVID 234
Query: 316 VCADGTLISG 325
+ DG L
Sbjct: 235 ILKDGRLKLD 244
>gi|146318336|ref|YP_001198048.1| hypothetical protein SSU05_0682 [Streptococcus suis 05ZYH33]
gi|146320530|ref|YP_001200241.1| hypothetical protein SSU98_0683 [Streptococcus suis 98HAH33]
gi|145689142|gb|ABP89648.1| hypothetical protein SSU05_0682 [Streptococcus suis 05ZYH33]
gi|145691336|gb|ABP91841.1| hypothetical protein SSU98_0683 [Streptococcus suis 98HAH33]
gi|292558129|gb|ADE31130.1| hypothetical protein SSGZ1_0671 [Streptococcus suis GZ1]
Length = 134
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 21/114 (18%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ I G+++ VL+ L +D+I+ DPPYN + +
Sbjct: 18 EESVDFDKSENVFITGDNLEVLKVLQESYLGKIDMIYIDPPYNTGKDFVYSDKFQMSEEE 77
Query: 68 VTDSWDKFSS------------------FEAYDAFTRAWLLACRRVLKPNGTLW 103
+ D D + + L+ R +LK +G ++
Sbjct: 78 LADEMDLRDEDGLQRVGLTKNEKSSARYHSDWLNMMYSRLVLARNLLKDSGVIF 131
>gi|261837549|gb|ACX97315.1| adenine-methyltransferase [Helicobacter pylori 51]
Length = 165
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 65/151 (43%), Positives = 90/151 (59%), Gaps = 6/151 (3%)
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+G +LQ L+F ILN I W+K+NP PNF R ++ E +IWA S K + FNY+ LK
Sbjct: 1 MGRILQKLDFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARKSRK-HKHVFNYEVLKK 59
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
N D QMR W P + E+ K HPTQKP ALL R+L+ ++ +I DPF G
Sbjct: 60 INNDKQMRDVWSFPAIAPWEKTNGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSG 114
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
S T+G A L+R FIGIE + +++ ++ R
Sbjct: 115 SSTTGIAANLLKRQFIGIEKESEFVKMSMDR 145
>gi|241759017|ref|ZP_04757129.1| type III restriction-modification system EcoP15I enzyme mod
[Neisseria flavescens SK114]
gi|241320838|gb|EER57071.1| type III restriction-modification system EcoP15I enzyme mod
[Neisseria flavescens SK114]
Length = 644
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 65/212 (30%), Gaps = 35/212 (16%)
Query: 13 QNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------R 59
+ ++ ++ I+ ++ L+ L SV +I+ DPPYN + +Y R
Sbjct: 96 KEESMDFDGTQNVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFIYPDKFSESR 155
Query: 60 PDHSLVDAVTDS-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+++ TD W D + + L + +L+ +G
Sbjct: 156 KEYARRVGDTDDAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGV 215
Query: 102 LWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ + ++ + + + + R F E ++ S
Sbjct: 216 IFISIDDNEQAQLKLLCDEVFGAENFVSNIIWEKRYTRSNNARMFTTLTEQIVCYRKSDN 275
Query: 161 AKGYTFNYD---ALKAANEDVQMRSDWLIPIC 189
+ + N D R W C
Sbjct: 276 LQELKEPRNEKADSTYTNPDNDPRGVWTSVSC 307
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 14/141 (9%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+++ +N + + ++ + + + D
Sbjct: 327 HTGEVITHPTNAWKFEHSKYLSYQEDNRLYWGK--NGENKYPRLKKFLTEMDGGMVPVDL 384
Query: 185 LIPICSG-----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSG 238
+G S+ L + G+ + KP +L+ R+L ++ D IILD F GSGT+
Sbjct: 385 WKHDETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFTGSGTTA 444
Query: 239 AVAKKLR------RSFIGIEM 253
+L R FI +++
Sbjct: 445 HAVMQLNAEDGGSRRFICVQL 465
>gi|170766114|ref|ZP_02900925.1| DNA methylase N-4/N-6 domain protein [Escherichia albertii TW07627]
gi|170125260|gb|EDS94191.1| DNA methylase N-4/N-6 domain protein [Escherichia albertii TW07627]
Length = 709
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 76/229 (33%), Gaps = 21/229 (9%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G + VL+ L VD+I+ DPPYN Y D+ D
Sbjct: 138 HSVINGENYHVLKALTYTHRGKVDVIYIDPPYNSGAKDWKYNNDYV-------EGDDLYR 190
Query: 78 FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ A L + +L P + L V R+G +L+ + ++ NP
Sbjct: 191 HSKWLAMMERRLEVAKLLLNPADSVLIVTIDEKEFLRLGLLLEQMFPEATIQMISSVINP 250
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ R RF E + + + + +R L+ GS R R
Sbjct: 251 KGSARTGRFSRVDEYIYYVFFGDAKVVPWRTDMLREVSENGRNVRWAGLMRNGEGSRRSR 310
Query: 197 ----------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+K+ H T +P L + G + + P G+G
Sbjct: 311 IPSMFFPIFIDKETGDYHSTGEPPPLDMKPSDVPVPEGTVAIFPIDGNG 359
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV--SSTKPGDI 226
D++ + G+ L+ + P K + L S K +
Sbjct: 427 DSVGTRSPGTLWNMVSHSASEHGAGLLKRMIPGRRFPYPKSLYAVEDCLRFVLSKKENAV 486
Query: 227 ILDPFFGSGTSGAVAKKLRR 246
++D F GSGT+ +L R
Sbjct: 487 VVDFFSGSGTTAHAVMRLNR 506
>gi|332672826|gb|AEE69643.1| type III restriction enzyme M protein [Helicobacter pylori 83]
Length = 299
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+ L T KPEALL RI+ ST+ D++LD F GSGT+ VA KL+R +IGIEM + +
Sbjct: 116 EGQALFDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCTVAHKLKRKYIGIEMGEHFD 175
Query: 259 DIATKRIAS 267
+ R+
Sbjct: 176 SMILPRLKK 184
>gi|315651941|ref|ZP_07904943.1| type III restriction-modification system [Eubacterium saburreum DSM
3986]
gi|315485770|gb|EFU76150.1| type III restriction-modification system [Eubacterium saburreum DSM
3986]
Length = 574
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 18/127 (14%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
E + K+ I+G+++ VL+ L V +I+ DPPYN + +
Sbjct: 39 EEESVNWNTTKNLYIEGDNLEVLKLLQESYLGKVKMIYIDPPYNTGNDFIYNDDFKVNTE 98
Query: 67 AVTDSWDKFSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
++S + + + +L R +L +G + V
Sbjct: 99 EYAKESGEYSDSGNRMFRNTDSNGRFHSDWCSMIYSRILIARNLLTNDGIIMVSIDEREY 158
Query: 112 FRIGTML 118
+ +
Sbjct: 159 ANVRKIC 165
>gi|212703129|ref|ZP_03311257.1| hypothetical protein DESPIG_01168 [Desulfovibrio piger ATCC 29098]
gi|212673395|gb|EEB33878.1| hypothetical protein DESPIG_01168 [Desulfovibrio piger ATCC 29098]
Length = 289
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA---SVQPLGNIELTVLTGK---RTE 285
GSGT+ AVA KL R FIG ++ I TKR+ + + L K E
Sbjct: 1 MGSGTTQAVAMKLGRRFIGADINLGAIQTTTKRLNGIIAEKKQAQHSLLDDGSKLYLNFE 60
Query: 286 PRVAFNLLVERGLIQPGQILTNA------QGNISATVCADGTLISGTELGSIHRVGAKVS 339
N V R +Q ++L A + DG ++ ++R+ +
Sbjct: 61 VYNVNNYDVFRNPVQARELLLQALEIDPLESTDVFDGMKDG---YKVKIMPVNRIATRAD 117
Query: 340 GSETCNGWNFWYFEKLGELHS 360
+ NG N+ ++ EL
Sbjct: 118 LNPLLNGINYRELDRQMELSP 138
>gi|139473507|ref|YP_001128223.1| phage DNA methylase [Streptococcus pyogenes str. Manfredo]
gi|134271754|emb|CAM29987.1| phage DNA methylase [Streptococcus pyogenes str. Manfredo]
Length = 254
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 28/236 (11%)
Query: 41 DLIFADPPYNLQLNGQLYRP----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
LI AD PYNL N P S + + K D + R+L
Sbjct: 27 QLIIADIPYNLGTNAYASDPRWYEKGSNKNGESKLAGKSFFDTDNDFKINNFFGFSARLL 86
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
K + M+ ++ ++ G++ ++
Sbjct: 87 KKE--------PKEKGKAPAMIVFHSWQQREMVIQC---------GKKHGFKKAYPLYFI 129
Query: 157 PSPKAKGYTFNY------DALKAANEDVQMRSDWLIPICSGS-ERLRNKDGEKLHPTQKP 209
+ N + D + + + ++ +HPTQKP
Sbjct: 130 KKSSPQALKANMRIVGAVEEATVLYRDKLPKFNNNGAMVLNHLPWEKDSSYPVIHPTQKP 189
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+L R++ T P D+++DP GSG++ A ++ R+ G E+K+D+ A + +
Sbjct: 190 IPVLKRLIEIFTDPDDVVIDPVAGSGSTIRAAIEMNRNAYGFEIKKDFYKRAKEEM 245
>gi|317014763|gb|ADU82199.1| adenine-specific DNA methylase [Helicobacter pylori Gambia94/24]
Length = 356
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 49/91 (53%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E L +G KL T KPEALL RIL STK D++ D F GSGT+ AVA KL+R +IG+
Sbjct: 166 KEILALFNGTKLFDTPKPEALLQRILEISTKENDLVCDFFAGSGTTCAVAHKLKRKYIGV 225
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
EM + + + R+ V K
Sbjct: 226 EMGEHFERVILPRLKKVIGGFKSGALKEFNK 256
>gi|210610977|ref|ZP_03288686.1| hypothetical protein CLONEX_00876 [Clostridium nexile DSM 1787]
gi|210152202|gb|EEA83209.1| hypothetical protein CLONEX_00876 [Clostridium nexile DSM 1787]
Length = 565
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 26/160 (16%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDA 67
++ +I G+++ L+ L K + I+ DPPYN +
Sbjct: 30 SKSYGESNTENMLIHGDNLLALKALENKYTGMIKCIYIDPPYNTGAAFE----------- 78
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
+D + + L R +L +GT+W+ + + + +
Sbjct: 79 ---HYDDNLEHSIWLGIMKKRLEILRNLLAEDGTIWIQIDDEEQAYLKVLCDEIF--GRS 133
Query: 128 DIVWRKSNPMPNFRG-------RRFQNAHETLIWASPSPK 160
+ V S M N G +R + E ++ + +
Sbjct: 134 NFVNMISVNMKNVAGASGGGEDKRLKKNCEYILVYAKNYD 173
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 176 EDVQMRSDWLIPICSGSERLRN--KDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFF 232
+ + D + ++N K+G+ P +KPE LL +I+ +T GD++LD F
Sbjct: 329 DGKLYKKDLQGTYWDMNAWMKNLTKEGDVTFPNGKKPEKLLKQIIEMTTSEGDMVLDSFL 388
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSGT+ A A KL R +IGIEM R+ +
Sbjct: 389 GSGTTAATAHKLNRRWIGIEMGNQAYSHCKVRLDN 423
>gi|208435263|ref|YP_002266929.1| adenine-specific DNA methylase [Helicobacter pylori G27]
gi|208433192|gb|ACI28063.1| adenine-specific DNA methylase [Helicobacter pylori G27]
Length = 299
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+ L T KPEALL RIL ST+ D++LD F GSGT+ AVA K++R +IG+EM + +
Sbjct: 116 EGQALFDTPKPEALLQRILEISTQENDLVLDFFAGSGTTCAVAHKMKRKYIGVEMGEHFE 175
Query: 259 DIATKRIASVQPLGNIELTVLTGK 282
+ R+ V + K
Sbjct: 176 CVILPRLKKVIGGFKSGVLKEFNK 199
>gi|240118154|ref|ZP_04732216.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae PID1]
Length = 492
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
Y N+ + W + N + +
Sbjct: 201 YENLGYNFILPIADKQWGRWRWGYSIKNKARLQTDIIVSQSKNGISLYKKQRPEL----- 255
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + +G+E+++N GEK KPE L+ + +T DI+
Sbjct: 256 --DDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNENDIV 313
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 314 LDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERMKK 353
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 16/171 (9%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
LI+ DPPY +P S + F + LL + +L +G
Sbjct: 2 KLIYIDPPYY----FVKKKPQDSFGYNTNFK------LSTWLTFMKNRLLIAKELLTDDG 51
Query: 101 TLWVIGSYHNIFRIGTMLQ--NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + + +L + ++ + N TL++A
Sbjct: 52 IIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMNLKGNNDEYAFAGTHEYTLVFAKNK 111
Query: 159 PKAKGYTFNYDALKAA----NEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
K+ Y F D +++ +G+E R E +P
Sbjct: 112 DKSTFYEFPIDEDNFLEKWEEDEIGFYKKGAPMRATGTEDKREDRPEMFYP 162
>gi|290474297|ref|YP_003467174.1| hypothetical protein XBJ1_1254 [Xenorhabdus bovienii SS-2004]
gi|289173607|emb|CBJ80387.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
Length = 345
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
++ +S+ ++ LP +DLI DPPY V A + WD ++ A
Sbjct: 7 TLVNDDSLKFIKTLPDNCIDLIATDPPYF-------------RVKACS--WDNQWEDVTA 51
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y A+ L RVLKPNG+L++ + +L F +LN I+W K
Sbjct: 52 YLAWLDELLAEFWRVLKPNGSLYMFCGSR-LAADTELLVRERFNVLNQIIWAKP------ 104
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
G + E+L P+ + + +Y D
Sbjct: 105 SGPWRRQNKESLRMYFPATERIIFAEHYQGPYHPKGD 141
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP L++ I+ SS++ GD++ D F GSG + A KL R +G+E++++ +
Sbjct: 278 HPCEKPADLMTHIIQSSSREGDLVADFFMGSGATLKTALKLNRRVLGVELEEERFKQTIQ 337
Query: 264 RIASV 268
I
Sbjct: 338 EINGQ 342
>gi|206576064|ref|YP_002237618.1| DNA methylase [Klebsiella pneumoniae 342]
gi|206565122|gb|ACI06898.1| DNA methylase [Klebsiella pneumoniae 342]
Length = 297
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
D + G+ + VL + S D I DPPY ++ G+ +WD
Sbjct: 3 DILTHGDCLDVLRSMLGNSADSIVTDPPYGIKFMGK--------------TWD------- 41
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
YD ++A C RVLKP G L R+ +++ F I + IV+
Sbjct: 42 YDVPSQAIWEECLRVLKPGGHLLSFAGSRTQHRMAARIEDAGFEIRDMIVFLYETS 97
Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+++ HP KP L+ + T PG +LDP
Sbjct: 261 KDRGEGNNHPCVKPTELMRYLCRLITPPGGTVLDP 295
>gi|300087210|ref|YP_003757732.1| DNA methylase N-4/N-6 domain-containing protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299526943|gb|ADJ25411.1| DNA methylase N-4/N-6 domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 326
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 170 ALKAANEDVQMRSDWLIP----ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
AN M + + + R+ +K HP P AL + + T G+
Sbjct: 33 CQCEANHINCMPAKEWMKSQLGVWQFFYEGRDIRDKKTHPATFPIALAKKCISLFTHEGE 92
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++LDPF GSGT+ A+ L R+ +G ++KQ+Y+ + R+
Sbjct: 93 LVLDPFVGSGTTLIAARDLNRNSVGFDLKQEYVSLCESRL 132
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 20/181 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHS-LVDAVT-DSW 72
I ++ ++ + L ++V LI PPY N G + D V+ + D+
Sbjct: 146 ICDDARNIDKYLAPETVSLIVTSPPYANLLNRKRLNKSRRGDTRQNDQYLKVEQYSQDTR 205
Query: 73 DKF-SSFEAYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTM------LQNLNF 123
D E Y ++L+P G V + RI L+ +
Sbjct: 206 DLGTMDIEQYSQAMGDIFEPLLKLLRPKGHCIINVPDMWWENKRITIHIALVEELRKRGY 265
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ N I+W ++N + + N + T+ ++ ++
Sbjct: 266 ELRNIIIWDRTNIVNKIGIFGWPNNYITMGTTFEYLLDFWRPPEENSDGNGKRGKRIEGI 325
Query: 184 W 184
Sbjct: 326 H 326
>gi|325564236|gb|ADZ31427.1| M.PflMI [Pseudomonas fluorescens]
Length = 363
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQ---MRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+A T +++ A + V+ + +R G+ HP +KP
Sbjct: 217 QYQKICEAILATGKVESMPAYEDAVRVFRIDGTKEFTDVWNFPSVRPYKGK--HPAEKPI 274
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
++L + ++T PGDI+LD F GSG++ + A KL R + +E++ +++ R+ + +
Sbjct: 275 SMLEHAIEATTFPGDIVLDCFSGSGSTASAALKLGRRTLSMEIEPHWVEYIGARLDAERV 334
Query: 271 LGNIE 275
+ E
Sbjct: 335 RMDEE 339
Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+G+S+S+L+KLP+ S+ LI DPPY + + A +D + Y +
Sbjct: 30 EGDSLSLLKKLPSHSISLILTDPPY-----HATKKQNIFGDTAFSDD-------QHYLEW 77
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP-NFRGR 143
+ RRVL+PNG+L+ R+ M + + + + ++P ++G+
Sbjct: 78 MSQFADEWRRVLRPNGSLFCFCDTSMSARLEVMFSEKFNILSHIVWTKPNDPGFDGWKGK 137
Query: 144 RFQNAHETLIWAS 156
+ A S
Sbjct: 138 MKKEALRQWYAHS 150
>gi|308182975|ref|YP_003927102.1| adenine-specific DNA methylase [Helicobacter pylori PeCan4]
gi|308065160|gb|ADO07052.1| adenine-specific DNA methylase [Helicobacter pylori PeCan4]
Length = 299
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ V S W ++ + + +G+ L T KPEALL RIL STK D++ D
Sbjct: 87 KQGVTPMSLWTYQEVGHTQDAKREIKELFEGQALFDTPKPEALLQRILEISTKENDLVCD 146
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
F GSGT+ AVA K++R +IG+EM + + + R+ V +
Sbjct: 147 FFAGSGTTCAVAHKMKRKYIGVEMGEHFESVILPRLKKVMGGFKSGVIKEFN 198
>gi|270604530|ref|ZP_06221611.1| type III restriction-modification system EcoPI enzyme mod
[Haemophilus influenzae HK1212]
gi|270318174|gb|EFA29394.1| type III restriction-modification system EcoPI enzyme mod
[Haemophilus influenzae HK1212]
Length = 320
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 61/199 (30%), Gaps = 21/199 (10%)
Query: 28 SISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS---------------LVDAVT 69
++ VL+ L + +I+ DPPYN +G +Y+ D +
Sbjct: 6 NLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRKFTPQQLVELGMDLEEAERVLE 65
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
+ +K +S A+ F L R +L+ +G +++ + ++ + +
Sbjct: 66 FTANKSNSHSAWLTFIYPRLYIARELLREDGVIFISIDDNEQAQLKLLCDEVFGEENFVA 125
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK---GYTFNYDALKAANEDVQMRSDWLI 186
+ HE ++ + + + + + + +
Sbjct: 126 ELPWKGRGGGADDKNLLQNHEYILMYTKYKEQFTVGRKIKSDEKFPKFDTEKNRFYKTQL 185
Query: 187 PICSGSERLRNKDGEKLHP 205
GS + +
Sbjct: 186 ARKWGSNSKKQDRPNLFYS 204
>gi|317014936|gb|ADU82372.1| putative type III restriction enzyme M protein (type III adenine
specific DNA methyltransferase (Mod)) [Helicobacter
pylori Gambia94/24]
Length = 460
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 20 KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA--------- 67
K +IKG+++ L+ L ++ + +I+ DPPYN + +Y D S +
Sbjct: 89 KHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNENFIYGDDFSQSNEEVLKTLDYS 148
Query: 68 -----VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
+ S + +F LL R +L+ +G +++ + ++ +
Sbjct: 149 KEKLDYIKNLFGLKSHSGWLSFMYPRLLLARDLLQQDGVIFISIDDNEAAQLKLLCDEIF 208
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+F G+ + E ++
Sbjct: 209 GEGNFVACAVWHKKDNASFLGKDIIDLLEYVLIYKK 244
Score = 39.6 bits (91), Expect = 0.72, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 7/149 (4%)
Query: 104 VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ GS I ++ + NDI + + S
Sbjct: 296 LYGSKQFCMEILEDVEIICGIPKNDIKIKGRFCWTQSSLDNETLKGGRIEIKSIKGMKPI 355
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRILV 218
+ N+D+ + S + + N+ D L KP L+ + +
Sbjct: 356 FYKNFDSNIPFRPMRNLLSKKIENDVATYNDAANEIKEIFDNLPLFEYSKPSKLIKKFIR 415
Query: 219 SST--KPGDIILDPFFGSGTSGAVAKKLR 245
+ T DIILD F GSGT+ +
Sbjct: 416 NVTDINSNDIILDFFAGSGTTAHAVLESN 444
>gi|326575075|gb|EGE25003.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis CO72]
Length = 656
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 22/179 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 127 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRNI 186
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 187 NGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 246
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ L+ + + + L +D
Sbjct: 247 EIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKNKNYDFNSVIERDLSNIKKD 305
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ LR+ E KP L+ + IILD F GS T+
Sbjct: 409 NPNYTNHKGTACLRDLLLENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVM 468
Query: 243 K------LRRSFIGIEM 253
+ R FI +++
Sbjct: 469 QLNTEDNGNRQFIMVQL 485
>gi|302390476|ref|YP_003826297.1| Site-specific DNA-methyltransferase (adenine-specific)
[Thermosediminibacter oceani DSM 16646]
gi|302201104|gb|ADL08674.1| Site-specific DNA-methyltransferase (adenine-specific)
[Thermosediminibacter oceani DSM 16646]
Length = 698
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 60/202 (29%), Gaps = 22/202 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN------GQLYRPD 61
E + ++ I+G+++ VL+ L +D+I+ DPPYN + + + +
Sbjct: 81 EESKNPDTTENLYIEGDNLEVLKLLRNSYYGRIDVIYIDPPYNTGNDPLYRDNYSIDKKE 140
Query: 62 HSLVDAVTDSWD---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ + + D + + L R +L NG +++ +
Sbjct: 141 YDMSEGNIDEYGNRFIINDKNNGHFHSNWLNIMYPILKIARELLSENGAIFISIDDNEYH 200
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR----FQNAHETLIWASPSPKAKGYTFNY 168
+ + + + G QN E ++ + + +
Sbjct: 201 NLKLICNEIFGEQNFINSIAVKTKIAGVSGSHLGKSLQNNIEYILAYAKNIENFYIAKQP 260
Query: 169 DALKAANEDVQMRSDWLIPICS 190
+ E +
Sbjct: 261 QKKQELIEYINTMKLLNKSWKY 282
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
++ +N E + + D ++ N + + + K+G+
Sbjct: 375 KKGKNCGEKIRLYFKDKSRNLIAWLKDVIEIDNGIIYKLDNKGNLWDDINFNNLTKEGDI 434
Query: 203 LHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
P +KP L+ I+ I+LD F GS ++ L R FI +++
Sbjct: 435 KFPNGKKPVQLIKDIISMVANKNSIVLDFFSGSASTAHAVMALNAEDGGSRKFIMVQI 492
>gi|126444474|ref|YP_001063378.1| DNA methylase [Burkholderia pseudomallei 668]
gi|126223965|gb|ABN87470.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei 668]
Length = 232
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R R +G HP + ++ ++ D++LDPF GSGT+G A + R F GIE+
Sbjct: 139 RGRKANG---HPCSRALEHFDWLMRFWSEDDDMVLDPFMGSGTTGVAAIRAGRKFTGIEI 195
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
+ Y +IA +RI Q L T R E
Sbjct: 196 EPKYFEIACRRIEDAQR--QESLFPATPARAEQ 226
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADP 47
+ G+ VLE LP D++ DP
Sbjct: 11 TLYLGDCREVLETLP--RADVVITDP 34
>gi|326563913|gb|EGE14164.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis 46P47B1]
Length = 634
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 22/179 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 105 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRNI 164
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 165 NGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 224
Query: 120 N-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ L+ + + + L +D
Sbjct: 225 EVFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKNKNYDFNSVIERDLSNIKKD 283
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ LR+ E KP L+ + IILD F GS T+
Sbjct: 387 NPNYTNHKGTACLRDLLLENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVM 446
Query: 243 K------LRRSFIGIEM 253
+ R FI +++
Sbjct: 447 QLNAEDNGNRQFIMVQL 463
>gi|296112587|ref|YP_003626525.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis RH4]
gi|295920281|gb|ADG60632.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis RH4]
Length = 658
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 22/179 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 129 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRNI 188
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 189 NGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 248
Query: 120 N-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ L+ + + + L +D
Sbjct: 249 EVFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKNKNYDFNSVIERDLSNIKKD 307
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ LR+ E KP L+ + IILD F GS T+
Sbjct: 411 NPNYTNHKGTACLRDLLLENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVM 470
Query: 243 K------LRRSFIGIEM 253
+ R FI +++
Sbjct: 471 QLNAEDNGNRQFIMVQL 487
>gi|157158703|ref|YP_001465832.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
gi|157080733|gb|ABV20441.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
Length = 1040
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 23/157 (14%)
Query: 14 NSIFEWKDKI----IKGNSISVLEKLPA--KSV-DLIFADPPYNLQLNGQLYRPDHSLVD 66
NSI + D + I G++ L L SV D + DPPYN +G LY+
Sbjct: 456 NSINDIDDNVDGVFINGDNYQALNLLKKKYNSVIDCVHIDPPYNTDTSGFLYKNSFK--- 512
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
++ + + LL + +L NG + + R+ + + L
Sbjct: 513 -----------HSSWLSMMDSRLLFVKNLLSENGVFFCHIDENEYERLYLINKQLGLIDA 561
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
I+W K NPM G HE + + +
Sbjct: 562 GTIIWDKRNPMNGGSGIAI--QHEYTTCFTKNMISIN 596
>gi|262038915|ref|ZP_06012258.1| type III restriction-modification system EcoPI, modification
subunit [Leptotrichia goodfellowii F0264]
gi|261747060|gb|EEY34556.1| type III restriction-modification system EcoPI, modification
subunit [Leptotrichia goodfellowii F0264]
Length = 682
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 20/170 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLN------GQLYRPD 61
E+ ++ I+G+++ VL+ L + +I+ DPPYN + + + +
Sbjct: 82 EDSKDADTTQNLYIEGDNLEVLKLLRQNYYGAIKMIYIDPPYNTGNDFIYNDNFSMSKEE 141
Query: 62 HSLVDA----------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
V+ + L R +L +G +++ +
Sbjct: 142 SEKVENRLSEDGERLQKNPKEGNSKYHTKWLNMMYPRLKVARDLLTDDGVIFISIDDNEQ 201
Query: 112 FRIGTMLQNLNFWILNDIV-WRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + + + N N F HE + S
Sbjct: 202 ANLKKICDEIFGGNNKVAILPTIMNLKGNQDEFAFAGTHEYTVVYSKKYD 251
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 58/201 (28%), Gaps = 26/201 (12%)
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
IL + +K++ +++ + Q + + + +
Sbjct: 345 YVIILPFVNGKKASWRWSYKKIQQQLKDIIITKTKNGISLNKKQRPELNDLPSKKMKSLL 404
Query: 182 SDWLIPICSGSERLRNKDG-EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+G+ L N +++ KP LL + TK ILD F GS T+
Sbjct: 405 YKPEYSSGNGTNELANIFEMKRIFSNPKPINLLKDLFSIGTKEDSTILDFFSGSATTAHA 464
Query: 241 AKK------LRRSFIGIEM--------------KQDYIDIATKRIASVQPLGNIELTVLT 280
K R +I +++ ++ +I +RI E+
Sbjct: 465 VMKLNSEDNGNRKYIMVQLPEETDEKSEAFKAGYKNICEIGKERIRRAGDKIKEEIEKEN 524
Query: 281 GK-----RTEPRVAFNLLVER 296
+ V R
Sbjct: 525 SNLKLGEEPKKVPDIGFKVFR 545
>gi|295111386|emb|CBL28136.1| Adenine specific DNA methylase Mod [Synergistetes bacterium SGP1]
Length = 574
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 17/220 (7%)
Query: 3 QKNSLAINENQNSI--FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
Q+ + E + ++ E + II+G+++ L+ L V ++ DPPYN G +
Sbjct: 17 QEVPFRVLEKKYTVGADESDNLIIRGDNLEALKALLPRYEGRVKCVYIDPPYNTGNEGWV 76
Query: 58 YRPD------HSLVDAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
Y + + AV + S + + L R+L P G +++
Sbjct: 77 YNDNVNDPRIRRWLGAVVGKEGEDLSRHDKWLCMMYPRLRLLHRLLSPAGAIFISIDDAE 136
Query: 111 IFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY----T 165
+ + + + + N E ++ S P T
Sbjct: 137 YSNLKAVCDEIFGPDCFVSNISWQRTYSTRNDSKGIVNEVEHILTYSRRPGWNPNKLPRT 196
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
DA ++ P G+ + HP
Sbjct: 197 EEMDAKYRNPDNDVALWRSDNPFAPGAATHQGMVYAIQHP 236
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------ 245
E L DG T KP L+ +L + P IILD F GSGT+ +
Sbjct: 362 KEMLAIFDGRATFDTPKPRRLVEFVLKIAGDPDSIILDSFAGSGTTAHAVLNMNKADGGR 421
Query: 246 RSFIGIEMKQDYIDIATKRIAS 267
R FI +EM I +R+
Sbjct: 422 RRFILVEMMDYAESITAERVRR 443
>gi|326566583|gb|EGE16729.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis 12P80B1]
Length = 630
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 22/179 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 101 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRNI 160
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 161 NGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 220
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ L+ + + + L +D
Sbjct: 221 EIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKNKNYDFNSVIERDLSNIKKD 279
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ LR+ E KP L+ + IILD F GS T+
Sbjct: 383 NPNYTNHKGTACLRDLLLENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVM 442
Query: 243 K------LRRSFIGIEM 253
+ R FI +++
Sbjct: 443 QLNTEDNGNRQFIMVQL 459
>gi|326566922|gb|EGE17061.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis 103P14B1]
Length = 382
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 22/179 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 110 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRNI 169
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 170 NGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 229
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ L+ + + + L +D
Sbjct: 230 EIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKNKNYDFNSVIERDLSNIKKD 288
>gi|84489281|ref|YP_447513.1| hypothetical protein Msp_0470 [Methanosphaera stadtmanae DSM 3091]
gi|84372600|gb|ABC56870.1| partially conserved hypothetical protein [Methanosphaera stadtmanae
DSM 3091]
Length = 393
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 25/228 (10%)
Query: 7 LAINENQNSIFEW---KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRP 60
+ ++N+ W ++ I+G+++ VL+ L + +++ DPPYN + +Y+
Sbjct: 74 CTLRPDKNNSKNWNTTENLYIEGDNLEVLKLLQKSYQSKIKMMYIDPPYNTGNDSFIYKD 133
Query: 61 DHSLVDAVTDSW----DKFSS--------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ + KF S + L R +L G L +
Sbjct: 134 NFQENETEYIEKEEERGKFQSNPNSSGRYHTNWMNMIYPLLRLARNLLSEEGVLLISIDD 193
Query: 109 HNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNA--HETLIWASPSPKAKGYT 165
+ + M + +++++W+K + ++ HE ++ + +
Sbjct: 194 NEFSNLIVMCKEIFGEENIDNLIWQKVDNDSGKMKITYRVRLEHEYVLICYKNKNKTYFN 253
Query: 166 FNYDALKAANE----DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ NE D R + I S +E NKD + P
Sbjct: 254 KFIEERNYKNEYDNPDNDPRGPYKQAIISSTEEKSNKDSPNYYSITTP 301
>gi|238914011|ref|ZP_04657848.1| putative type III restriction/modification system modification
methylase [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
Length = 89
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
M +G+E+++N GEK KPE L+ + +T DI+LD GSGT+ A
Sbjct: 1 MFYKPEYSSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDYHLGSGTTAA 60
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIAS 267
VA K+ R +IGIE +A +R+
Sbjct: 61 VAHKMNRQYIGIEQMDYIETLAVERLKK 88
>gi|332656326|ref|YP_004301628.1| methyltransferase [Tetragenococcus halophilus]
gi|332656391|ref|YP_004306083.1| methyltransferase [Tetragenococcus halophilus]
gi|326324639|dbj|BAJ84466.1| methyltransferase [Tetragenococcus halophilus]
gi|326324669|dbj|BAJ84495.1| methyltransferase [Tetragenococcus halophilus]
Length = 534
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 1 MSQKNSLAINENQNSI--FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG 55
+S N QN I + + IIKGN++ L L V LI+ DPPYN +
Sbjct: 31 LSNMKKYNANGEQNIIKFNDTDNLIIKGNNLIALHTLKERYAGKVKLIYIDPPYNTGGDS 90
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
Y D+F + + F + L +LK +G + + + +
Sbjct: 91 FKYN-------------DRF-NRSTWLTFMKNRLKVAFSLLKEDGVIVIQTDNNENHYLK 136
Query: 116 TML 118
+
Sbjct: 137 VLC 139
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 10/234 (4%)
Query: 49 YNLQLNGQLYRPDHSLVD-AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
Y+ + + ++ D V + D F E Y L + + +V
Sbjct: 196 YDPRSDYDMHYSKFLTYDYKVKNVKDVF--MEQYPNIEFLGLSEMYK-VSNEFKEFVDDY 252
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
HNIFR + + V R N R + ++ + GY+ +
Sbjct: 253 QHNIFRYDKVTGFNINNFIEGEVVRVER---NGREYYLERKSNSIEQLMFLGASYGYSND 309
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + ++R DW + + KL +KPE L+ +++S TK +I+
Sbjct: 310 FFSTYGF---RKIRGDWWSGYYLDMGNVNKEGNVKLSSGKKPERLIYDLIISLTKKEEIV 366
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
LD F GSGTS A A K +R FIG+E D+A +R +V ++
Sbjct: 367 LDFFMGSGTSIAAALKTQRQFIGLEQLDYIEDLAIERFKNVISGEQTGVSQRCN 420
>gi|303239108|ref|ZP_07325638.1| ParB domain protein nuclease [Acetivibrio cellulolyticus CD2]
gi|302593446|gb|EFL63164.1| ParB domain protein nuclease [Acetivibrio cellulolyticus CD2]
Length = 442
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/296 (16%), Positives = 91/296 (30%), Gaps = 56/296 (18%)
Query: 20 KDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++ G S V+ + K L A PP V + D +K
Sbjct: 168 RHRLMCGYSGSQEDVIRLMDGKHAQLCVASPP----------------VGCIKDYEEKG- 210
Query: 77 SFEAYDAFTRAWLLACRRV----------LKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
+A+ R + R L G+ ++ + ++ W
Sbjct: 211 -IDAWFEAMRPAIGNICRHSDIAVISIDDLMVTGSQFIEPTSDYSIQLFRENGFRPIWKR 269
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
S+ MP++ + S +T N + ++ A ++ +
Sbjct: 270 IWQKQGISSGMPSYHTVSNKPQ-------PQSEDIIAFTMNGETVECAVDEYAGVYGFAG 322
Query: 187 PICSGSERLRNKDGEKLH-----------------PTQKPEALLSRILVSSTKPGDIILD 229
+RL KD K P P L R + + G I+L+
Sbjct: 323 HAYRFVKRL-TKDERKAWGFKKIWQIAVVQKREGQPATFPVELPWRCIKLHSDRGGIVLE 381
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
PF G+GT ++ R +E + Y+D+A KR + + +
Sbjct: 382 PFSGNGTVIIACEQTDRVCHAMEKESLYVDLAVKRWVQFTGGEDEVFLLRGNDKIP 437
>gi|326560849|gb|EGE11214.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis 7169]
Length = 625
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 22/179 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 96 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRNI 155
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 156 NGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 215
Query: 120 N-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ L+ + + + L +D
Sbjct: 216 EVFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKNKNYDFNSVIERDLSNIKKD 274
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ LR+ E KP L+ + IILD F GS T+
Sbjct: 378 NPNYTNHKGTACLRDLLLENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVM 437
Query: 243 K------LRRSFIGIEM 253
+ R FI +++
Sbjct: 438 QLNTEDNGNRQFIMVQL 454
>gi|258593568|emb|CBE69909.1| Adenine specific DNA methylase Mod [NC10 bacterium 'Dutch
sediment']
Length = 588
Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 13/199 (6%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----- 72
+ II G+++ L+ L A +D I+ DPPYN Y + S+ + W
Sbjct: 41 NLIIYGDNLKALKALLPLYAGKIDCIYIDPPYNTGNEKWAY--NDSVNSPMMQDWLGKVV 98
Query: 73 DKFS--SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
D+ + + L + +LK G + V + ++ + F N I
Sbjct: 99 DREDLTRHDKWLCMMMPRLKILKDLLKSEGVIMVSIDDNEAHHFRCLMDEV-FGEENFIA 157
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ F HE ++ + S +
Sbjct: 158 QLVCEKGRKNDAKLFSVGHEYILIYARSMDTLKQRKTIWREDKPGAKEIQDEYLRLRALH 217
Query: 191 GSERLRNKDGEKLHPTQKP 209
GS+ ++G + Q P
Sbjct: 218 GSDSNAIQEGLRDFYKQLP 236
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGA 239
S + + L + G+K+ K +L+R++ T ++LD F G+GT+G
Sbjct: 349 SYFYRSALQATNVLVSIFGKKVFENPKDHEVLARLIRYVTQGNQRALVLDSFAGTGTTGH 408
Query: 240 VAK------KLRRSFIGIEMKQDYIDIATKR----IASVQPLGNIELT 277
K R FI +E + I +R I V + L
Sbjct: 409 AVLALNESDKGSRRFILVECEDYADSITAERVRRVIKGVPISKDEALR 456
>gi|171060953|ref|YP_001793302.1| DNA methylase N-4/N-6 domain-containing protein [Leptothrix
cholodnii SP-6]
gi|170778398|gb|ACB36537.1| DNA methylase N-4/N-6 domain protein [Leptothrix cholodnii SP-6]
Length = 447
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 14/159 (8%)
Query: 21 DKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ ++ ++ L L A K LI+ DPPY L+ Q +H+ DA++D
Sbjct: 73 NSLVWSDNWFALHNLLASGKKATLIYLDPPYATGLDFQSRDQEHAYNDALSD-------- 124
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPM 137
Y F R L+ +L G+++V + + + +L +I+ R+
Sbjct: 125 AGYIEFIRRRLILMLELLSDQGSIYVHIGHQMLGEMKLILDEVFGAKNFRNIITRRKCSS 184
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
NF ++ N ++ +++ S + YT+N +
Sbjct: 185 KNFTKHQYANLNDYILFYSK---SDSYTWNQPMENPDPD 220
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/262 (13%), Positives = 77/262 (29%), Gaps = 41/262 (15%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT------ 85
++ + + +F + + ++++ Y F
Sbjct: 160 MKLILDE----VF-------GAKNFRNIITRRKCSSKNFTKHQYANLNDYILFYSKSDSY 208
Query: 86 ----------RAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
W+ + G ++ + GT ++ +
Sbjct: 209 TWNQPMENPDPDWIAKEYPKVDSKGQYKLVP----VHAPGTRRGETGGLWRGEMPPAGKH 264
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+A + W+ + D A + D
Sbjct: 265 WQYTPTRLDEFDAKGEIHWSKNGNPRRKVYLPADKGLALTDYWDKYRDAHHQSIL----- 319
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+PT+K ++ I+ +S+ PGD+++DPF GSG++ A L R +IGI+
Sbjct: 320 -----ITGYPTEKNFEMMKMIVAASSNPGDLVIDPFSGSGSTVHAADVLGREWIGIDQSL 374
Query: 256 DYIDIATKRIASVQPLGNIELT 277
+ A KR+ + +
Sbjct: 375 LAVKTAIKRLTLGRNPMGDFVK 396
>gi|229846088|ref|ZP_04466200.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae 7P49H1]
gi|229811092|gb|EEP46809.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae 7P49H1]
Length = 581
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 6/183 (3%)
Query: 91 ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
R +PN + +N + + + R +N
Sbjct: 260 NAPREKRPNLFFPIFIDSNNKVYVTDDNKKPITYTGGLETIYPITDGKEMSWRWSKNKFI 319
Query: 151 TLIWASPSPKAKGYTFNYDALKAANED------VQMRSDWLIPICSGSERLRNKDGEKLH 204
+ G Y + +D + +G+E+++N GEK+
Sbjct: 320 NQNNDVIVSRNNGSISLYKKQRPKLDDLPTKKPKTIFYKPEYSSGNGTEQMKNLFGEKVF 379
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
KPE L+ + +T DIILD GSGT+ AVA K+ R +IGIE +A +R
Sbjct: 380 KNPKPEELIQDFITITTNENDIILDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVER 439
Query: 265 IAS 267
+
Sbjct: 440 LKK 442
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 15/196 (7%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPY +P S
Sbjct: 88 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYY----FVKKKPQDSFGYNTNFK----- 138
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ--NLNFWILNDIVWRKS 134
+ F + LL + +L +G + + + +L + ++ +
Sbjct: 139 -LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMN 197
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N TL++A K+ Y F D + + + + +
Sbjct: 198 LKGNNDEYAFSGTHEYTLVFAKNKDKSTFYEFPIDEYEMLQDWEEDNIGFYKQGANLKST 257
Query: 195 LRNKDGEKLHPTQKPE 210
N EK P
Sbjct: 258 GVNAPREKRPNLFFPI 273
>gi|320159539|ref|YP_004172763.1| putative methyltransferase [Anaerolinea thermophila UNI-1]
gi|319993392|dbj|BAJ62163.1| putative methyltransferase [Anaerolinea thermophila UNI-1]
Length = 307
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ R+ + +HP P +L +++ T G+++LDPF GSGT+ A+ L R+
Sbjct: 56 WQFNYEGRDIRDKSIHPATFPISLSKKVISLFTHEGELVLDPFVGSGTTLVAARDLNRNA 115
Query: 249 IGIEMKQDYIDIATKRIAS 267
+G ++++ YID+ +R+A+
Sbjct: 116 VGFDLQEKYIDLCAERLAT 134
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFS------ 76
I ++ ++ L + V LI+ PPY NL +L + + +++S
Sbjct: 146 IHDDARNIPNYLEPEMVSLIWTSPPYANLLNRKRLNKSRRDRKNEQFGKIEQYSQDPSDL 205
Query: 77 ---SFEAYDAFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTM------LQNLNFWI 125
E Y +LKP G V + RI L+ + +
Sbjct: 206 GTMPLEEYTRAMGEIFEKLLPLLKPRGHCVINVPDMWWEDKRITIHVSLIEELRQRGYEL 265
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETL 152
N I+W ++N + + + + T+
Sbjct: 266 RNIIIWDRTNIVNKIGIFGWPSNYITM 292
>gi|317178104|dbj|BAJ55893.1| putative type III restriction enzyme M protein [Helicobacter pylori
F16]
Length = 657
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 28/200 (14%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 168 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 213
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L R L +G ++V + + ++ + + + V + +
Sbjct: 214 HSSWLVFMKNRLEIAREFLSDDGVIFVQCDDNEQAYLKVLMDEIF--LRENFVATITCKV 271
Query: 138 PNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRSDWLIPI 188
+ G N E ++ + S + Y + + N Q S
Sbjct: 272 KSAGGLTTDTEMIFNCSEYVLVYAKSFENLTYNSIKISKEIINSQSKTSEQYNSIINNID 331
Query: 189 CSGSERLRNKDGEKLHPTQK 208
E + KD K + K
Sbjct: 332 YRKKEFICEKDNIKYYKISK 351
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ + G + N+ L +KPEAL+SRIL ST+ D++LD F GSGT+ AVA
Sbjct: 454 NIFTEDFWQG---ISNEGQITLKNGKKPEALISRILEISTQENDLVLDFFAGSGTTCAVA 510
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
K++R +IGIE I +R+ V ++ + + L E L
Sbjct: 511 HKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNLEVK 570
Query: 302 GQILTNAQGNISATVCAD 319
QIL + + D
Sbjct: 571 KQILNAKSKSEYLKIFND 588
>gi|257058544|ref|YP_003136432.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 8802]
gi|256588710|gb|ACU99596.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 8802]
Length = 442
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 17/162 (10%)
Query: 21 DKIIKGNSI-SVLEKLPA----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+++ G+++ +L L +V LI+ DPP+ Q S DA D
Sbjct: 61 NQLYYGDNLPILLSLLQDRNIQGNVKLIYIDPPFATQR----IFQSRSQTDAYCD----L 112
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKS 134
Y F R L+ R +L +G+++V + F + +L + + RK
Sbjct: 113 LQGSNYLEFIRKRLIILRELLADDGSIYVHLDENMAFYVKLILDEVFGQKNFRNWITRKK 172
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
N+ + + N + +++ + + YT+N + +E
Sbjct: 173 CNPKNYTRKTYGNISDFILFYTK---SDNYTWNRPYEQWTDE 211
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
WR NP P + + + +K ++ + ++ W+ +
Sbjct: 247 WRNMNPPPGKHWQFSPEKLDEMDKKGEIYWSKNGNPRRKIYLDKSQGIPVQDIWVDYKDA 306
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
++ ++ +PT+K LLSRI+ +S+ D++LD F GSGT+ AVA L R +IG
Sbjct: 307 HNQNIK----ITGYPTEKNPDLLSRIIKASSNKHDLVLDCFSGSGTTLAVASDLERRWIG 362
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
I+ + I KR A + K
Sbjct: 363 IDNSSEAIVTTLKRFAQGCEPMGDFVNQPPHK 394
>gi|309796420|ref|ZP_07690828.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
gi|308119925|gb|EFO57187.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
Length = 415
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/264 (16%), Positives = 77/264 (29%), Gaps = 39/264 (14%)
Query: 36 PAKSVDLIFADPPYN--LQLNG--------------------QLYRPDHSLVDAVTDS-- 71
+ V L PP+ +Q + P S+V V++
Sbjct: 126 LDEPVHLCVTSPPFPLRIQRGYGNVDEAKWVDFITQALEPIVKNLVPGGSVVLNVSNDIF 185
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
K S Y L + + W+ S + + V+
Sbjct: 186 EAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWACVNRYQLCAGWEPVY 245
Query: 132 RKSNPMPNFRGRR------FQNAHETLI-----WASPSPKAKGYTFNYDALKAANEDVQM 180
+N R H+ L+ S Y +A E
Sbjct: 246 WFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDNRVVSYGDGAYRLRGNAFSNVTEGRIP 305
Query: 181 RSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
++ R+ + G HP P + + T+ GD+++DPF GS
Sbjct: 306 KNVIQRGHRCADTLELRRIARELGLPPHPAMFPTDIPEMAIRFLTEEGDLVVDPFSGSNK 365
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDI 260
SG A++ R +I ++ +YI
Sbjct: 366 SGLAAERNNRRWIACDIILEYIRT 389
>gi|254560999|ref|YP_003068094.1| site-specific DNA methyltransferase [Methylobacterium extorquens
DM4]
gi|254268277|emb|CAX24213.1| putative site-specific DNA methyltransferase [Methylobacterium
extorquens DM4]
Length = 571
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
DA A N+ + S S+R HPT KP L+ ++ T PG +
Sbjct: 436 MDATVAPNDATNPARFFYCAKASPSDRGSGNH----HPTVKPSNLMRYLVRLVTPPGGTV 491
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
LDPF GSG++G A + +G E+ DY+ IA RIA + + ++
Sbjct: 492 LDPFLGSGSTGKAAVEEGFGIVGCELMPDYVRIARSRIADGCLNTGNDDRMPQQEKA 548
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Query: 22 KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQLYRPDHSLVDA------------ 67
++I+G+ +++ +L A+ V D DPPY+L + + R + + +
Sbjct: 150 RVIQGDCRAIMLELAAEGVQFDACVTDPPYHLSIAKRFGRKNSAPLKGGEPGSANPYRAM 209
Query: 68 ----VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ WD AF A VLKP G L G R+ +++ F
Sbjct: 210 ANGFMGQDWDGGG-----VAFDADTWRAVYNVLKPGGYLVAFGGTRTFHRLAVAVEDAGF 264
Query: 124 WILNDIVWRKSNPMP 138
I + I W P
Sbjct: 265 EIRDTISWVFGTGFP 279
>gi|261839365|gb|ACX99130.1| hypothetical protein HPKB_0530 [Helicobacter pylori 52]
Length = 345
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 49/76 (64%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E L +G KL T KPEAL+SRIL ST+ D++LD F GSGT+ AVA KL+R +IGI
Sbjct: 155 KEILVLFNGTKLFDTPKPEALISRILEISTQENDLVLDFFAGSGTTCAVAHKLKRKYIGI 214
Query: 252 EMKQDYIDIATKRIAS 267
EM + + + R+
Sbjct: 215 EMGEHFERVILPRLKK 230
>gi|194335498|ref|YP_002017292.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194307975|gb|ACF42675.1| DNA methylase N-4/N-6 domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 581
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 19 WKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ +++I G+++ L+ L + V ++ DPP+N Q + +D
Sbjct: 45 FDNRLIFGDNLLALKALEQEFSGKVKCVYIDPPFNTQQAFE--------------HYDDG 90
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ R + R ++ +GTL+V + + + +L
Sbjct: 91 LEHSIWLGLIRDRIDIIRNLISEDGTLFVHIDDNELGYLIVLL 133
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 176 EDVQMRSDWLIPICSG--SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ + + L I S + N+ G + +KPEAL+ R +T GD++LD F G
Sbjct: 311 DGKYVAGEPLTTIWDDLLSNNIHNEGGIEFPKGKKPEALIKRCFELATIDGDLVLDSFAG 370
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
SGT+GAVA K+ R +I +E+ + R+ V +
Sbjct: 371 SGTTGAVAHKMGRRWIMVELGEHCHTHIIPRLQKVIDGEDK 411
>gi|284050607|ref|ZP_06380817.1| DNA methylase N-4/N-6 domain protein [Arthrospira platensis str.
Paraca]
Length = 438
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 27/209 (12%)
Query: 22 KIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ G+++ VL L + S++LI+ DPP+ + + A D+
Sbjct: 49 RLYFGDNLDVLRLLATEPEICGSINLIYIDPPFAT----ESHFLSRKQSKAYDDT----L 100
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSN 135
+ + F R L+ ++L +G++++ IF I ++ +++ RK
Sbjct: 101 TGAVFVEFLRERLIWLHQLLSNHGSIYLHLDEKMIFHIKLIMDEVFGAENYRNMIVRKKC 160
Query: 136 PMPNFRGR----------RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
N+ R + + + P ++ Y ++ M+
Sbjct: 161 NPKNYTRRTYGKTADFILFYTKSDTYIWNQPKVPLSENSKKEYQYIEPETGRKFMKVPLH 220
Query: 186 IPICSGSERLRNKDGEKLHP---TQKPEA 211
P E + G+ P Q P
Sbjct: 221 APGVRHGETGKPWRGKMPPPGKHWQYPPK 249
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 4/158 (2%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
WR P P + + + +K + V ++ WL +
Sbjct: 233 WRGKMPPPGKHWQYPPKTLDEMDARGEIFWSKNGNPRRKVYLNEHSGVGVQDIWLEFRDA 292
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
++ ++ +PT+K LL RI+ +S+ PGD+ILD F GSGTS A+A +++R++IG
Sbjct: 293 YNQNVK----ITGYPTEKNPDLLRRIIAASSNPGDLILDCFAGSGTSLAIADEMQRNWIG 348
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
++ + R + E +
Sbjct: 349 VDHSIEAFKTILNRFEHGIKPMGDFVKSSGSNSEEVYI 386
>gi|134044472|ref|YP_001101743.1| DNA methylase [Yersinia ruckeri]
gi|133904835|gb|ABO40852.1| DNA methylase [Yersinia ruckeri]
Length = 414
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/264 (16%), Positives = 77/264 (29%), Gaps = 39/264 (14%)
Query: 36 PAKSVDLIFADPPYN--LQLNG--------------------QLYRPDHSLVDAVTDS-- 71
+ V L PP+ +Q + P S+V V++
Sbjct: 125 LDEPVHLCVTSPPFPLRIQRGYGNVDEAKWVDFITQALEPIVKNLVPGGSVVLNVSNDIF 184
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
K S Y L + + W+ S + + V+
Sbjct: 185 EAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWACVNRYQLCAGWEPVY 244
Query: 132 RKSNPMPNFRGRR------FQNAHETLI-----WASPSPKAKGYTFNYDALKAANEDVQM 180
+N R H+ L+ S Y +A E
Sbjct: 245 WFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDNRVVSYGDGAYRLRGNAFSNVTEGRIP 304
Query: 181 RSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
++ R+ + G HP P + + T+ GD+++DPF GS
Sbjct: 305 KNVIQRGHRCADTLELRRIARELGLPPHPAMFPTDIPEMAIRFLTEEGDLVVDPFSGSNK 364
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDI 260
SG A++ R +I ++ +YI
Sbjct: 365 SGLAAERNNRRWIACDIILEYIRT 388
>gi|269122884|ref|YP_003305461.1| Site-specific DNA-methyltransferase (adenine- specific)
[Streptobacillus moniliformis DSM 12112]
gi|268314210|gb|ACZ00584.1| Site-specific DNA-methyltransferase (adenine- specific)
[Streptobacillus moniliformis DSM 12112]
Length = 369
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 7/148 (4%)
Query: 24 IKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS---WDKFSS 77
I ++ + L SVDL++ DPP+N + S + + + + +
Sbjct: 38 INADNFDAMIMLLDNFENSVDLVYIDPPFNTNSDFYYNEDKTSTISSSKNDSLAYSDKMN 97
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
Y F R L+ +++L GT++ I +L + + R +
Sbjct: 98 LNEYLEFIRKRLILIKKLLSDRGTIYFHIDCKVGPYIKLILDEIFGIKNFVNDISRVKSN 157
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGY 164
NF+ + F N + + S + +
Sbjct: 158 PKNFKRKAFGNEKDVIYIYSKKNQNNIF 185
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
++PT+K +LS I S+ II+D F GS + +R IGI+
Sbjct: 288 KDPQNPIYPTEKNLDMLSMIAQQSSNEDSIIMDCFCGSSSFLLAGINKKRYVIGIDKSDV 347
Query: 257 YIDIATKR 264
++ KR
Sbjct: 348 SKEVLLKR 355
>gi|254180442|ref|ZP_04887040.1| DNA methylase [Burkholderia pseudomallei 1655]
gi|184210981|gb|EDU08024.1| DNA methylase [Burkholderia pseudomallei 1655]
Length = 303
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ AWL CRR LKP G L + + + ++Q + VW K+ R
Sbjct: 131 DWCHAWLSECRRALKPGGLLVSFIDWRQLPTLTDVVQAAGLTLRGVAVWDKTLGRMRLRR 190
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
F E ++WAS DV + + + K
Sbjct: 191 GGFAQQAEFVVWASRGAMRGC-------------DVYLPGVFPCRLPLP----------K 227
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H T+KP + ++ G ++ D F GSGT A A++ ++G E Q Y I++
Sbjct: 228 QHVTEKPLDIAREVVRLM-PAGVVVCDLFAGSGTFLAAAREAGLHWVGSETNQAYHAISS 286
Query: 263 KRIA 266
R+
Sbjct: 287 ARLD 290
>gi|91204435|emb|CAJ70935.1| hypothetical protein kustb0190 [Candidatus Kuenenia
stuttgartiensis]
Length = 128
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
+L RI+ +S+ DI+ D F GSGT+ AVA+KL R +IG ++ + I KR+ VQ
Sbjct: 1 MLERIIKASSNENDIVADFFCGSGTTPAVAEKLGRKWIGADLGKFAIHTTRKRMIGVQRQ 60
Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
+ R + I + + A+G S + S+
Sbjct: 61 LKED---GKDFRAFEILNLGKYERAHYIGVSSFI-------EPRIDANGR-KSKQKDISV 109
Query: 332 HRV 334
+ V
Sbjct: 110 NSV 112
>gi|322378807|ref|ZP_08053236.1| adenine-specific DNA methylase [Helicobacter suis HS1]
gi|321148837|gb|EFX43308.1| adenine-specific DNA methylase [Helicobacter suis HS1]
Length = 468
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%)
Query: 24 IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--VDAVTDSWDKFSSF 78
I G + L+ L VD I+ DPPYN + Q S + DKF
Sbjct: 41 IFGENYDALKNLLVLYRGCVDCIYIDPPYNTESTKQDGNDYKSKENISGKFGYRDKFM-R 99
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPM 137
+ L + +L P G +++ + + RK+
Sbjct: 100 TGWLNMLNERLKLAKDLLSPKGVIFISIDDSEQAYLKVLCDEIFGEGNFVGDFIRKTKST 159
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
N HE L+ + + + + +D + + ++
Sbjct: 160 INDAKIGVNYQHEFLLGYAKNKISVNLRGGQKD---LSHYTNPDNDPNGAWAADNPSAKS 216
Query: 198 KDGEKLH 204
+ + +
Sbjct: 217 GNLKTGY 223
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 59/196 (30%), Gaps = 13/196 (6%)
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF---NYD 169
G + +P + Y +
Sbjct: 223 YFGVTNPYTGKIDYPPTGMFWRFSEKTLQKHIESGRICFKKEHAPHERGFIYKRYLSDLK 282
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ + + + + + + E L + + K A + +IL+ +T P +ILD
Sbjct: 283 STQKTFDSLAFVDNAYMNQAATKELL-DLGMAESFNYPKSAAFIQKILLHATSPNSLILD 341
Query: 230 PFFGSGTSGAVAKK------LRRSFIGIEMKQDYID--IATKRI-ASVQPLGNIELTVLT 280
+ GSGT+G + R I + ++ I + +RI +G T
Sbjct: 342 FYAGSGTTGQAVMELNREDGGNRRCILVTSNENNIAKGVMYERIYRICHGVGTKNETFGW 401
Query: 281 GKRTEPRVAFNLLVER 296
KR EP V +
Sbjct: 402 TKRNEPFKDQGWEVFK 417
>gi|270055448|gb|ACZ58941.1| Type III restriction-modification system methylation subunit
[Staphylococcus aureus]
Length = 586
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ IN +N I ++ + +++G+++ L L +DLI+ DPPYN+
Sbjct: 74 FKEDKERKINGMKN-INDF-NFLLEGDNLHSLYLLEKTHTNKIDLIYIDPPYNMGQKDFK 131
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y D D D + + +F ++ LL +++L +G L V YH F++ +
Sbjct: 132 YNDD------YVDKDDNYY-HSKWLSFMKSRLLMAKKLLTEDGILAVSIDYHEGFQLKLL 184
Query: 118 L 118
L
Sbjct: 185 L 185
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPFFG 233
+ +R + S L+ + +KP L+ +++ + K IILD F G
Sbjct: 370 GERAVRGNLWKGFSSDGGNLKKEGSVDFKKGKKPLRLIKQLVMTLLGDKQDTIILDFFAG 429
Query: 234 SGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRIASVQPLGNIELTVLTGKRTE 285
SGT+ R +I ++ I ++ KR+ ++Q + E
Sbjct: 430 SGTTAHAVAALNKEDGGNRKYIICTNNENNICEEVTYKRLENIQSDLPHNVKYFKTCFIE 489
Query: 286 PRVAFNLLVERGLIQ 300
+ ++ +E L++
Sbjct: 490 KELFPDIELESELLK 504
>gi|270055226|gb|ACZ58719.1| methyltransferase [Staphylococcus aureus]
Length = 600
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ IN +N I ++ + +++G+++ L L +DLI+ DPPYN+
Sbjct: 88 FKEDKERKINGMKN-INDF-NFLLEGDNLHSLYLLEKTHTNKIDLIYIDPPYNMGQKDFK 145
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y D D D + + +F ++ LL +++L +G L V YH F++ +
Sbjct: 146 YNDD------YVDKDDNYY-HSKWLSFMKSRLLMAKKLLTEDGILAVSIDYHEGFQLKLL 198
Query: 118 L 118
L
Sbjct: 199 L 199
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPFFG 233
+ +R + S L+ + +KP L+ +++ + K IILD F G
Sbjct: 384 GERAVRGNLWKGFSSDGGNLKKEGSVDFKKGKKPLRLIKQLVMTLLGDKQDTIILDFFAG 443
Query: 234 SGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRIASVQPLGNIELTVLTGKRTE 285
SGT+ R +I ++ I ++ KR+ ++Q + E
Sbjct: 444 SGTTAHAVAALNKEDGGNRKYIICTNNENNICEEVTYKRLENIQSDLPHNVKYFKTCFIE 503
Query: 286 PRVAFNLLVERGLIQ 300
+ ++ +E L++
Sbjct: 504 KELFPDIELESELLK 518
>gi|269214310|ref|ZP_05986314.2| type III restriction-modification system methyltransferase
[Neisseria lactamica ATCC 23970]
gi|269210190|gb|EEZ76645.1| type III restriction-modification system methyltransferase
[Neisseria lactamica ATCC 23970]
Length = 658
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 32/201 (15%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
+ I+ ++ L+ L SV +I+ DPPYN + +Y R +++ TD
Sbjct: 121 NVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKFSESREEYARRVGDTD 180
Query: 71 S-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
W D + + L + +L+ +G +++ +
Sbjct: 181 DAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQA 240
Query: 113 RIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-- 169
++ + + + + R F E ++ S + +
Sbjct: 241 QLKLLCDEVFGAENFVSNIIWEKRYTRSNNARMFTTLTEQIVCYRKSDNLQELKEPRNEK 300
Query: 170 -ALKAANEDVQMRSDWLIPIC 189
N D R W C
Sbjct: 301 ADSTYTNPDNDPRGVWTSVSC 321
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 14/141 (9%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+++ +N + + ++ + + + D
Sbjct: 341 HTGEVITHPTNAWKFEHSKYLSYQEDNRLYWGK--NGENKYPRLKKFLTEMDGGMVPVDL 398
Query: 185 LIPICSG-----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSG 238
+G S+ L + G+ + KP +L+ R+L ++ D IILD F GSGT+
Sbjct: 399 WKHDETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTA 458
Query: 239 AVAKKLR------RSFIGIEM 253
+L R FI +++
Sbjct: 459 HAVMQLNAEDGGSRRFICVQL 479
>gi|259908710|ref|YP_002649066.1| Phage DNA adenine-methylase [Erwinia pyrifoliae Ep1/96]
gi|224964332|emb|CAX55841.1| Phage DNA adenine-methylase [Erwinia pyrifoliae Ep1/96]
gi|283478684|emb|CAY74600.1| putative phage DNA methylase [Erwinia pyrifoliae DSM 12163]
Length = 352
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ +S+ ++ LP SVDLI DPPY A WD + Y
Sbjct: 12 LVNADSLVYIKTLPDNSVDLIATDPPYY-----------RVKNCAWDRQWD---TVTDYL 57
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGS 107
A+ +L RVLKP+G+L++
Sbjct: 58 AWLDEFLAEFWRVLKPSGSLYLFCG 82
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
HP +KP L+ I+ SS++PGD++ D F GSG + A K RS IG+E++++
Sbjct: 290 HPCEKPAELMEHIITSSSRPGDVVADFFMGSGATVKAALKHGRSAIGVELEEERF 344
>gi|322380655|ref|ZP_08054807.1| type II restriction-modification adenine-specific DNA methylase
[Helicobacter suis HS5]
gi|321146977|gb|EFX41725.1| type II restriction-modification adenine-specific DNA methylase
[Helicobacter suis HS5]
Length = 468
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%)
Query: 24 IKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL--VDAVTDSWDKFSSF 78
I G + L+ L VD I+ DPPYN + Q S + DKF
Sbjct: 41 IFGENYDALKNLLVLYRGCVDCIYIDPPYNTESTKQDGNDYKSKENISGKFGYRDKFM-R 99
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPM 137
+ L + +L P G +++ + + RK+
Sbjct: 100 TGWLNMLNERLKLAKDLLSPKGVIFISIDDSEQAYLKVLCDEIFGEGNFVGDFIRKTKST 159
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
N HE L+ + + + + +D + + ++
Sbjct: 160 INDAKIGVNYQHEFLLGYAKNKISVNLRGGQKD---LSHYTNPDNDPNGAWAADNPSAKS 216
Query: 198 KDGEKLH 204
+ + +
Sbjct: 217 GNLKTGY 223
Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 13/196 (6%)
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF---NYD 169
G + +P + Y ++
Sbjct: 223 YFGVTNPYTGKIDYPPTGMFWRFSEKTLQKHIESGRICFKKEHAPHERGFIYKRYLSDFK 282
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ + + + + + + E L + + K A + +IL+ +T P +ILD
Sbjct: 283 STQKTFDSLAFVDNAYMNQAATKELL-DLGMAESFNYPKSAAFIQKILLHATSPNSLILD 341
Query: 230 PFFGSGTSGAVAKK------LRRSFIGIEMKQDYID--IATKRI-ASVQPLGNIELTVLT 280
+ GSGT+G + R I + ++ I + +RI +G T
Sbjct: 342 FYAGSGTTGQAVMELNREDGGNRRCILVTSNENNIAKGVMYERIYRICHGVGTKNETFGW 401
Query: 281 GKRTEPRVAFNLLVER 296
KR EP V +
Sbjct: 402 TKRNEPFKDQGWEVFK 417
>gi|238898170|ref|YP_002923851.1| DNA methylase, N6_N4_Mtase domain protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465929|gb|ACQ67703.1| DNA methylase, N6_N4_Mtase domain protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 360
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 17 FEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+ ++ ++ G+++ ++ LP S+DLI DPPY A W
Sbjct: 1 MTFSNQPILVNGDALPYVKTLPDDSIDLILTDPPYY-----------RVKSCAWERQW-- 47
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ Y A+ +L+ +R+LKPNG+L++ S + ++ + +LN I+W K
Sbjct: 48 -KTTGQYLAWLNDYLVEFQRILKPNGSLYLFCSA-ELAADTEIMPRNHMRMLNHIIWAKP 105
Query: 135 NPMPNFRGRRFQNAHE 150
+ + ++
Sbjct: 106 YGRGTGCSKEWLRSYF 121
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP ALL I+ +S+KP + D F GSG++ A + R IG+E++ D K
Sbjct: 285 HPCEKPAALLEHIINASSKPKHTVADFFMGSGSTVKAAIQSGRQAIGVELETDRFLQTKK 344
Query: 264 RIASVQPLGN 273
I ++ P N
Sbjct: 345 EIENLIPQIN 354
>gi|32456042|ref|NP_862209.1| DNA methyltransferase [Enterobacter sp. RFL1396]
gi|27464468|gb|AAO16095.1| DNA methyltransferase [Enterobacter sp. RFL1396]
Length = 332
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I+ + ++VL+K+P+ S+ LI DPPY+ +Y D + Y
Sbjct: 26 LIVNHDCLTVLKKIPSNSISLILTDPPYHATQKKNIYGDTQFKKD------------DEY 73
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP-NF 140
+ + RR+LKPNG+L+ R+ ML + + + + + P +
Sbjct: 74 INWMEEISIEWRRILKPNGSLYCFCDSSMSARLEVMLSKRFNILNHIVWTKPNQPGFDGW 133
Query: 141 RGRRFQNAHETLIWAS 156
+G+ + + S
Sbjct: 134 KGKMNKESLRQWYGHS 149
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 8/222 (3%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+N+ + +P+ D +K S + Y ++ C N G
Sbjct: 114 FNILNHIVWTKPNQPGFDGWKGKMNKESLRQWYG--HSERIIFCEPAKDGNLHRSSFGEL 171
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
R + L L + ++ + A T
Sbjct: 172 LKKKRTESGLSGHKLTELTGAYGKVNHGGA-VSNWETGRNIPSREQYQKIKDAILNTKKV 230
Query: 169 DALKAANEDVQMR---SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+++ + ++ + E +R G+ HP +KP+ +L+ I+++S+ D
Sbjct: 231 NSMPEYEDAIRPFIISKNLEYTDVWNFESVRPYKGK--HPAEKPQDMLNHIIMASSYESD 288
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
IILD F GSG++ AK+ +R I I++ + D +R+
Sbjct: 289 IILDCFSGSGSTALSAKRNKRKCISIDIDTHWTDYTERRLNE 330
>gi|313668659|ref|YP_004048943.1| type iii restriction-modification system methyltransferase
[Neisseria lactamica ST-640]
gi|313006121|emb|CBN87582.1| putative type iii restriction-modification system methyltransferase
[Neisseria lactamica 020-06]
Length = 634
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 32/201 (15%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
+ I+ ++ L+ L SV +I+ DPPYN + +Y R +++ TD
Sbjct: 97 NVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKFSESREEYARRVGDTD 156
Query: 71 S-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
W D + + L + +L+ +G +++ +
Sbjct: 157 DAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQA 216
Query: 113 RIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD-- 169
++ + + + + R F E ++ S + +
Sbjct: 217 QLKLLCDEVFGAENFVSNIIWEKRYTRSNNARMFTTLTEQIVCYRKSDNLQELKEPRNEK 276
Query: 170 -ALKAANEDVQMRSDWLIPIC 189
N D R W C
Sbjct: 277 ADSTYTNPDNDPRGVWTSVSC 297
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+++ +N + + ++ + + + D
Sbjct: 317 HTGEVITHPTNAWKFEHSKYLSYQEDNRLYWGK--NGENKYPRLKKFLTEMDGGMVPVDL 374
Query: 185 LIPICSG-----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSG 238
+G S+ L + G+ + KP +L+ R+L ++ D IILD F GSGT+
Sbjct: 375 WKHDETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTA 434
Query: 239 AVAKKLR------RSFIGIEMKQDYIDIATKRIASVQ 269
+L R FI +++ ++ + + R A
Sbjct: 435 HAVMQLNAEDGGSRRFICVQLPEETDEKSEARKAGFN 471
>gi|254293997|ref|YP_003060020.1| Site-specific DNA-methyltransferase (adenine-specific) [Hirschia
baltica ATCC 49814]
gi|254042528|gb|ACT59323.1| Site-specific DNA-methyltransferase (adenine-specific) [Hirschia
baltica ATCC 49814]
Length = 546
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 64/201 (31%), Gaps = 12/201 (5%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL-------VDAVTD 70
+ +++G+++ L+ L A V I+ DPPYN G +Y + + V
Sbjct: 39 NLLVQGDNLGALKALLPYYAGKVKCIYIDPPYNTGNEGWVYNDNVNSPEIKAWLEKTVGK 98
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDI 129
+ S + + L R L+ +G ++V R+ +L
Sbjct: 99 EGEDLSRHDKWLCMMYPRLRLLREFLREDGAIFVSIDDDENHRLRVLLDEIFGSQNFIAS 158
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ + P + F + H+ ++ K++ + N +
Sbjct: 159 LIWQKKYAPAGDAKYFSDDHDYVLVYGK-HKSRWVPNKLARTEEQNARYSNPDNDPRGPW 217
Query: 190 SGSERLRNKDGEKLHPTQKPE 210
NK+ + P
Sbjct: 218 KADNYASNKNNTERPNGWYPV 238
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMK 254
+++ T KP L+ R+L + P D+ILD F GSGT+G R FI +EM
Sbjct: 323 DEIFATPKPSTLIQRLLEIGSNPDDLILDSFAGSGTTGHAVLDLNKQDGGNRKFILVEMD 382
Query: 255 QD-YIDIATKRIAS 267
Q D+ +R+
Sbjct: 383 QKIAPDVTAERLKR 396
>gi|324007550|gb|EGB76769.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
Length = 415
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/264 (16%), Positives = 77/264 (29%), Gaps = 39/264 (14%)
Query: 36 PAKSVDLIFADPPYN--LQLNG--------------------QLYRPDHSLVDAVTDS-- 71
+ V L PP+ +Q + P S+V V++
Sbjct: 126 LDEPVHLCVTSPPFPLRIQRGYGNVDEAKWVDFITQALEPIVKNLVPGGSVVLNVSNDIF 185
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
K S Y L + + W+ S + + V+
Sbjct: 186 EAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWACVNRYQLCAGWEPVY 245
Query: 132 RKSNPMPNFRGRR------FQNAHETLI-----WASPSPKAKGYTFNYDALKAANEDVQM 180
+N R H+ L+ S Y +A E
Sbjct: 246 WFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDNRVVSYGDGAYRLRGNAFSNVTEGRIP 305
Query: 181 RSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
++ R+ + G HP P + + T+ GD+++DPF GS
Sbjct: 306 KNVIQRGHRCADTLELRRIARELGLPPHPAMFPTDIPEMAIRFLTEEGDLVVDPFSGSNK 365
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDI 260
SG A++ R +I ++ +YI
Sbjct: 366 SGLAAERNNRRWIACDIILEYIRT 389
>gi|260843063|ref|YP_003220841.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|260866987|ref|YP_003233389.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|257758210|dbj|BAI29707.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|257763343|dbj|BAI34838.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
Length = 438
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 69/163 (42%), Gaps = 13/163 (7%)
Query: 3 QKNSLAINENQNSIFEW-KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
QK N+ + +I D +I ++ L+KL + LI+ DPPY ++ Q
Sbjct: 54 QKYISLKNKRKTNIELIPTDSLILADNYFGLKKLMENYTSKIKLIYLDPPYGTGMDFQSR 113
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
H+ D + + F R L+ R +L +G++++ + +F + ++
Sbjct: 114 DLKHAYRDVM--------GTAPWIEFIRRRLIFMRELLTNDGSIYIHIGHQMLFHLKIIM 165
Query: 119 QN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++ RK N+ ++ N ++ +++ S S K
Sbjct: 166 DEVFGEENFRNLIIRKKCSSKNYTKNQYPNINDYILFYSKSKK 208
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
T N +D ++ + K +PT+K +L +I
Sbjct: 279 KGEIHWSKTGNPRRKVYLTQDKKLPLTDYWDQFRDAHHQSIKI--TGYPTEKNFDMLKKI 336
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
+ +ST GD++LDPF GSGT+ A++L R ++GI+ I + +R+ +
Sbjct: 337 IAASTNVGDLVLDPFCGSGTTLHAAQELDRKWLGIDQSFQAIITSIRRLKYGLEPMGDFV 396
Query: 277 TVLTGKRT 284
+++
Sbjct: 397 KSNAAEKS 404
>gi|254779414|ref|YP_003057519.1| putative type III restriction enzyme M protein (type III adenine
specific DNA methyltransferase (Mod)) [Helicobacter
pylori B38]
gi|254001325|emb|CAX29310.1| Putative type III restriction enzyme M protein (type III adenine
specific DNA methyltransferase (Mod)) [Helicobacter
pylori B38]
Length = 644
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 29/126 (23%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD----------- 66
+ II G+++ L+ L + + + +I+ DPPYN Q PD+ D
Sbjct: 102 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTQNE-NFIYPDNFRQDYQKILREVGLM 160
Query: 67 AVTDSWDKFSS--------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ ++ ++ S + +F L R +LK +G +++ +
Sbjct: 161 EIDENGEEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECA 220
Query: 113 RIGTML 118
+ +
Sbjct: 221 NLKILC 226
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 157 PSPKAKGYTFNYDALKAANED----VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
K Y D++ + ++ D + +E D L KP L
Sbjct: 372 KGMKPIFYKNFDDSVPYRSMRNLLSKKIEKDVATNNDAANEIKEIFDNLPLFEYPKPSKL 431
Query: 213 LSRILVS--STKPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEMKQD 256
+ + + + T DIILD F GSGT+ K R FI +++ ++
Sbjct: 432 IKKFIRNVTDTNSNDIILDFFAGSGTTAHAVMELNAEDKGNREFILVQIDEE 483
>gi|289675319|ref|ZP_06496209.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae FF5]
Length = 127
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
++ H P L+ +++ G ++LDPF G+GT+ V+ + R I E+ +Y +
Sbjct: 42 KEAHFATFPPDLIRPCILAGAPRGGVVLDPFGGAGTTSLVSMQEGRRSIICELNPEYAAL 101
Query: 261 ATKRIA 266
A RI
Sbjct: 102 ARARID 107
>gi|109946810|ref|YP_664038.1| type IIS restriction enzyme M1 protein fragment 2 [Helicobacter
acinonychis str. Sheeba]
gi|109714031|emb|CAJ99039.1| type IIS restriction enzyme M1 protein fragment 2 [Helicobacter
acinonychis str. Sheeba]
Length = 171
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 53/112 (47%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
++KG N W I E+ K + HP+ KP+AL+ R+
Sbjct: 57 KHAQSKGILKNNKRWFPNPNGKLCLDVWEIASQRHVEKENGKILKPKHPSIKPKALIERM 116
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ +S+ D+ILD F GSG + VAK L R+FIG E +Y+ + + + +
Sbjct: 117 IKASSHKNDLILDLFSGSGMTSLVAKSLGRNFIGCESHAEYVHESLEILDMI 168
>gi|15612361|ref|NP_224014.1| putative type III DNA modification enzyme (methyltransferase)
[Helicobacter pylori J99]
gi|4155899|gb|AAD06869.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 44/86 (51%)
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
L T KPEALL RIL ST D++LD F GSGT+ AVA K++R +IGIE
Sbjct: 430 NSNTDLFSTPKPEALLQRILEISTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYI 489
Query: 258 IDIATKRIASVQPLGNIELTVLTGKR 283
I +R+ V ++ +
Sbjct: 490 ETITKERLKKVIEGEQGGISKKCDFK 515
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 19/138 (13%)
Query: 21 DKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K I+ DPPYN + Y + +
Sbjct: 166 NYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNYNDN--------------FN 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L A R L +G ++V + + ++ + + +
Sbjct: 212 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIF--GRENFIACFVWEK 269
Query: 138 PNFRGRRFQNAHETLIWA 155
+ R + E ++
Sbjct: 270 TSNSLSRIRIKTEYILCY 287
>gi|326335107|ref|ZP_08201304.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692637|gb|EGD34579.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 251
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP L+ ++ T G I+LDPF GSG++G R +IG E++ +Y DI+ K
Sbjct: 178 HPTLKPVELMQHLVKLITFEGQIVLDPFSGSGSTGLACLMNDRKYIGYELETNYYDISLK 237
Query: 264 RIASVQPLGNIELT 277
RI ++ L
Sbjct: 238 RIEDLEREQMYSLF 251
>gi|328545737|ref|YP_004305846.1| ParB domain protein nuclease [polymorphum gilvum SL003B-26A1]
gi|326415477|gb|ADZ72540.1| ParB domain protein nuclease [Polymorphum gilvum SL003B-26A1]
Length = 439
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/268 (17%), Positives = 86/268 (32%), Gaps = 31/268 (11%)
Query: 21 DKIIKGNSISV--LEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKF 75
+++ G+S S + +L I DPPY + +G + + A +WD
Sbjct: 179 HRLLCGDSTSASDVRRLMNGE-RAILFATDPPYLVDYDGSNHPTRNKDWSASYGTTWDDS 237
Query: 76 SSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S YD F A + + + + + + ++ I+W K
Sbjct: 238 SQGAELYDGFIA---AAVAEAIAEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 294
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ +H + + + + S W +P + ER
Sbjct: 295 RGV-------LTRSH-----YLWKHEPCFMGWRRPNRPPKVAEQTLPSTWEMPSFAKDER 342
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HPT KP + G + +PF GSG+ + R +E+
Sbjct: 343 P-------DHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVFAMEIS 395
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGK 282
Y+D+A +R G + G+
Sbjct: 396 PAYVDVAVER--WQAETGKDAILDSDGR 421
>gi|71893735|ref|YP_279181.1| putative type III restriction-modification system: methylase
[Mycoplasma hyopneumoniae J]
gi|71851862|gb|AAZ44470.1| putative type III restriction-modification system: methylase
[Mycoplasma hyopneumoniae J]
Length = 575
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/202 (12%), Positives = 63/202 (31%), Gaps = 15/202 (7%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL---------PAKSVDLIFADPPYNL 51
+ + L+ + ++ ++ +I G + VL+ L + DLI+ DPPYN
Sbjct: 80 LEKDEKLSFSSSKMK-DNLQNSLIIGENYDVLKNLIGVEREREREDSNFDLIYIDPPYNT 138
Query: 52 QLNGQLYRP-DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
Q + A + S + L R++LK +G ++V +
Sbjct: 139 QKTSDDGNNLTDDQITADKFIYRDKFSRTGWLNLLNERLKLARQLLKEDGVIFVSIDDNE 198
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA----HETLIWASPSPKAKGYTF 166
+ ++ + + +E ++ + + +
Sbjct: 199 QAYLKVLMDEIFGEENFVANMVWRKSAQGTHKDVEVDNLNTVNEYIVTYAKDKSKFKFDY 258
Query: 167 NYDALKAANEDVQMRSDWLIPI 188
+ + +E + R
Sbjct: 259 VKHSQEKLDEIYKFRDKNFEKY 280
Score = 43.5 bits (101), Expect = 0.052, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 13/184 (7%)
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
P+GT + I + NI + + + + + + + + +A
Sbjct: 308 PDGTNFKI--WQNIDKPQSASYSWSKPTFDKAKNLGLIEFKKNKQDYWVVHKKEYQYAKF 365
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSD--WLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
K + N V +++ I G+ L + K KP L+
Sbjct: 366 DTKEGVLKTVARGVPFTNMIVANQNNLESDIYTSEGARELNSIFNSKEFDYPKPVRLIKY 425
Query: 216 ILVSSTKPGDI-ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIA 266
++ + +I +LD F GSGT+G +L R+F + ++ I ++ +R+
Sbjct: 426 LIKMLSSKKNIRVLDFFAGSGTTGQAVLELNKEDNGTRTFTLVTNNENNIGQNVTYERLY 485
Query: 267 SVQP 270
+
Sbjct: 486 RINK 489
>gi|293476569|ref|ZP_06664977.1| N4/N6-methyltransferase [Escherichia coli B088]
gi|291321022|gb|EFE60464.1| N4/N6-methyltransferase [Escherichia coli B088]
Length = 644
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 23/157 (14%)
Query: 14 NSIFEWKDKI----IKGNSISVLEKLPA--KSV-DLIFADPPYNLQLNGQLYRPDHSLVD 66
NSI + D + I G++ L L SV D + DPPYN +G LY+
Sbjct: 60 NSINDIDDNVDGVFINGDNYQALNLLKKKYNSVIDCVHIDPPYNTDTSGFLYKNSFK--- 116
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
++ + + LL + +L NG + + R+ + + L
Sbjct: 117 -----------HSSWLSMMDSRLLFVKNLLSENGVFFCHIDENEYERLYLINKQLGLIDA 165
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
I+W K NPM G HE + + +
Sbjct: 166 GTIIWDKRNPMNGGSGIAI--QHEYTTCFTKNMISIN 200
>gi|313124724|ref|YP_004034983.1| DNA recognition and methylase subunit mod (type iii restriction and
modification system),llafi-like protein [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312281287|gb|ADQ62006.1| DNA recognition and methylase subunit Mod (Type III restriction and
modification system),LlaFI-like protein [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 538
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 17/169 (10%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + ++ +I G+++ L+ L A + I+ DPPYN S +
Sbjct: 31 EKSYGDPDSENMLIHGDNLIALQALQQDFAGKIKCIYIDPPYNTG----------SAFEY 80
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
D + + + R LL +L +G L + +L +
Sbjct: 81 YDDDME----HSIWLSLMRKRLLLLHSLLSDDGFLCCHIDDSESHYLKVVLDEIFGRSNY 136
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
P+ + + H+ + + T N+D + +
Sbjct: 137 LTTMYIRVRYPDKTLKSDMDFHKEIEQVLVYRRTPEATPNFDYDEVGYD 185
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 2/184 (1%)
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
LK I ++ R N + V K + + R A
Sbjct: 228 LKEIWATGTILDGNSSGRFFRDYLNGRYEEDGYGVLYKVYGIGDDRYDYRYFTGPKRQGA 287
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
+ +G + + + S + + G+ R ++ G + +KPEAL+
Sbjct: 288 TKGKYYQGVPIDKLESEKIERKKPIGSFYDLAGSFGNCR--HEGGVEFRSGKKPEALIEM 345
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
I+ + D +LD F GSG++ A A K++R +IGIEM + R+ +V
Sbjct: 346 IIRYFSNKTDWVLDSFLGSGSTTATAHKMQRRWIGIEMGDHAYTLCKTRMDNVINGDETG 405
Query: 276 LTVL 279
++
Sbjct: 406 ISQK 409
>gi|304438944|ref|ZP_07398867.1| site-specific DNA-methyltransferase (adenine-specific)
[Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372610|gb|EFM26193.1| site-specific DNA-methyltransferase (adenine-specific)
[Peptoniphilus duerdenii ATCC BAA-1640]
Length = 676
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 65/180 (36%), Gaps = 23/180 (12%)
Query: 1 MSQKNSLAINENQNSI---FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ + + +E NS+ ++ I G+++ L+ L V I+ DPPYN +
Sbjct: 72 LDTETVIVPDEAHNSLPENVNSENVYISGDNLDGLKHLLKSYAGQVKCIYIDPPYNTGSD 131
Query: 55 GQLYRPDHS-----LVDAVTDSWDKFS-----------SFEAYDAFTRAWLLACRRVLKP 98
G +Y + LV+ ++ ++ S A+ F L + +L
Sbjct: 132 GFVYNDKFNFTVEELVEKLSIDEEQSQRILDLTNRGSASHSAWLMFMYPRLQLAKDLLDK 191
Query: 99 NGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+G +++ + + + + + + + ++ N E ++ +
Sbjct: 192 DGVIFISIDDNEQGNLKLLCDDIFSETNFVAQLVWEKKKKGSYLADSVTNIKEYILVYAK 251
>gi|225020946|ref|ZP_03710138.1| hypothetical protein CORMATOL_00957 [Corynebacterium matruchotii
ATCC 33806]
gi|224946285|gb|EEG27494.1| hypothetical protein CORMATOL_00957 [Corynebacterium matruchotii
ATCC 33806]
Length = 340
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 9/196 (4%)
Query: 85 TRAWL-LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
+ WL R P N Q ++ V + N+ G
Sbjct: 143 MKEWLLSEWLRTGLPKADANKACGVKNAATRKYFDQGWLWYFPPVDVMMQLVAHANWFGD 202
Query: 144 RFQNAHE-----TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+ T + A+ + + + E +R+ R
Sbjct: 203 PAGRPYFSFDGTTPVSAAEWATTRSVWHHEHGVTNVWERPPLRNSERYRGSMRRSAPRTH 262
Query: 199 DGEKL---HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
KL H QKP L+ R + ++T PGD++ +PF G ++ A +L R+ E Q
Sbjct: 263 KPTKLSASHLNQKPLDLMERCINATTNPGDVVWEPFGGLCSASVAAVRLGRTAFSAEPNQ 322
Query: 256 DYIDIATKRIASVQPL 271
D+ +A +R++S+
Sbjct: 323 DFYQLAYERLSSLNKY 338
>gi|188994727|ref|YP_001928979.1| DNA methylase N-4/N-6 [Porphyromonas gingivalis ATCC 33277]
gi|188594407|dbj|BAG33382.1| DNA methylase N-4/N-6 [Porphyromonas gingivalis ATCC 33277]
Length = 544
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 3/136 (2%)
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ + H + P+ T + + +
Sbjct: 247 EWRYSQASINEQIQNGEHYIIKSKKFRPRRVFSTSKAKTMHNL---LSRAHVNMSTYEDA 303
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
++ N G+ KPE L+S ++ +T+PGD++LD F GSGT+ AVA K+ R +IGI
Sbjct: 304 TKESINLFGDNAFDYPKPEMLISVLIQCATQPGDLVLDSFLGSGTTAAVAHKMGRRYIGI 363
Query: 252 EMKQDYIDIATKRIAS 267
E+ R+
Sbjct: 364 ELGDHAYTHCVPRLKK 379
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 19/146 (13%)
Query: 21 DKIIKGNSISVLEKL----PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +I G+++ L L A V I+ DPPYN +D
Sbjct: 38 NLLIHGDNLLALRSLVASGYAGKVKCIYIDPPYNTGSAFT--------------HYDDMQ 83
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN-FWILNDIVWRKSN 135
+ + + L R +L P+G +++ + + + +
Sbjct: 84 EHSIWLSLMKQRLELLRELLAPDGVIFISIDDDECHYLKVICDEVFLRVNYCGSFIWEKK 143
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKA 161
P+F + + E ++ + K
Sbjct: 144 RKPSFLNSQMGSVTEYVLCYARDRKR 169
>gi|146338458|ref|YP_001203506.1| putative adenine-specific DNA-methyltransferase [Bradyrhizobium sp.
ORS278]
gi|146191264|emb|CAL75269.1| putative Site-specific DNA-methyltransferase (adenine-specific)
[Bradyrhizobium sp. ORS278]
Length = 733
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+IK ++ L+ L SVD+I+ DPPYN Y D D D F
Sbjct: 132 HTLIKADNFHALQLLLFCYPSSVDVIYIDPPYNSGARDWKYNND------YVDKTDTFR- 184
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ + + LL + +LKP+G L V + + +G +L+++ L V NP
Sbjct: 185 HSKWLSMMKKRLLIAKHLLKPDGVLIVTIDENELHHLGLLLEDVFESYLRHTVTIVINPK 244
Query: 138 PNFRGRRFQNAHETLIWASP 157
+ + L
Sbjct: 245 GAGKRNFARTEEHALFCVPK 264
Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 52/189 (27%), Gaps = 29/189 (15%)
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
K T R + + I + P +G + + +
Sbjct: 390 KNGLTPVWPIDKEGNHRCWRFIASSMKKIHEEKRLVVGRQDPTTKG--WTLNYWIPKSKT 447
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSR 215
+ K + +DA G+ L G + P K
Sbjct: 448 KNVKTVWWHARHDAGT-----------------HGTSMLHKILGRRDAFPFPKSLYATRD 490
Query: 216 ILV--SSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATK-RIA 266
L+ ++P ++LD F GSGT+ L R I + + +A K R
Sbjct: 491 ALLTVIGSRPNALVLDFFAGSGTTLHATALLNAQLGGSRRCILVSNNEPGATVAGKLRRK 550
Query: 267 SVQPLGNIE 275
+ P
Sbjct: 551 QIYPGDADY 559
>gi|256026475|ref|ZP_05440309.1| putative type III restriction enzyme M protein [Fusobacterium sp.
D11]
Length = 357
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 50/232 (21%)
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
+ L +++L +G++++ Y+ + ++ ++ +
Sbjct: 1 MKNRLELAKKLLTDDGSIFINLDYNEVHYCKVLMDDIFGRENFQREIIWRIGWVSGYKTS 60
Query: 145 FQN---AHETLIWASPS------------------------------------------- 158
N H+T+++ S +
Sbjct: 61 VNNYIRNHDTILFYSKNKEFYFNKQYILNSEFKNLVKKDKVKSEFEKLNIDDDLQDKLLN 120
Query: 159 ---PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
K + + + + ANE + S ++ SG + E QK E L+ R
Sbjct: 121 IINYKTRPERYPLEDVWNANEYDDLNSIAIVSY-SGESVSKMLKIENDIKGQKSEKLIER 179
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
I+ +ST GD ILD GSGT+ AVA K+ R +IGIE DI +R+
Sbjct: 180 IIKNSTMEGDTILDFHLGSGTTAAVAHKMGRRYIGIEQMDYIEDIVVERLKK 231
>gi|327398832|ref|YP_004339701.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
DSM 10411]
gi|327181461|gb|AEA33642.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
Length = 323
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/307 (16%), Positives = 101/307 (32%), Gaps = 66/307 (21%)
Query: 23 IIKGNSISV----LEKLPAKSVDLIFADPPYNLQLNGQ---------------------- 56
+ GN V L++ + LI PP+ L +
Sbjct: 12 LFLGNFTEVYSEYLKEHYENKIQLIITSPPFPLNNKKRYGNLTGEEYLKWFESFAPIFSS 71
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEA--YDAFTRAWLLACRRVLKPNGTLWVIG-------- 106
L + + SLV + + W+K ++ + + L+ V
Sbjct: 72 LLKENGSLVIEIGNVWEKNRPVQSLLHLEALMNLVRHPYANLRLIQEFIVYNPSRLPSPA 131
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG--RRFQNAHETLIWASPSP--KAK 162
+ + RI T+ + W + + P + R R + ++ + L+ K
Sbjct: 132 QWVTVNRIRTIDSYTHVWW----IAKSDFPKADNRKVLRPYSSSMKNLLKRKKYNSGKRP 187
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSER----------------------LRNKDG 200
+ + N + ++ +R + G
Sbjct: 188 SEHYIGEKSFLKNNGGSIAHNFFEMKPLDEKREVRLPYNVLSFSNSSSNDYFLKRCRELG 247
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HP + + + + T D++LDPF GS T+G VA+ L R +I E+K++Y++
Sbjct: 248 IKPHPARMHPGVAAFFIEFLTDENDLVLDPFAGSNTTGYVAEMLNRRWIACELKKEYVEQ 307
Query: 261 ATKRIAS 267
+ R
Sbjct: 308 SKIRFED 314
>gi|326570779|gb|EGE20804.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis BC1]
Length = 527
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/199 (11%), Positives = 57/199 (28%), Gaps = 28/199 (14%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 8 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQPKKDYEIATGDRDM 67
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 68 NGQLLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 127
Query: 120 --NLNFWILNDIVWRKSNPMPNFRGRRFQNAHE-----TLIWASPSPKAKGYTFNYDALK 172
+ DI+W + + N + H + + + + + D +
Sbjct: 128 EIFGGENFVADIIWNSTKSVTNTALISVSHTHNLVYFKDIDYFIKNRELFRLKDDGDGFE 187
Query: 173 AANEDVQMRSDWLIPICSG 191
+ D + G
Sbjct: 188 NPDNDPRGAWKADPFQVGG 206
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 182 SDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
D + +G++ L+ + + KP +L+ R+L + IILD F GS T+
Sbjct: 278 WDDVETTTNGTQLLKRLFNEKSFFDNPKPISLIKRMLELGSDNKSIILDFFAGSATTAHA 337
Query: 241 AKK------LRRSFIGIEM 253
+ R FI +++
Sbjct: 338 VMQLNTEDNGNRQFIMVQL 356
>gi|320536135|ref|ZP_08036188.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
gi|320147052|gb|EFW38615.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
Length = 299
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
R+ +K+HP P A+ R++ T G+++LDPF GSGT+ A+ L R+
Sbjct: 38 WEFMYEPRDIRDKKIHPAVFPIAMAKRVIEQFTHRGELVLDPFVGSGTTLLAAQDLNRNA 97
Query: 249 IGIEMKQDYIDIATKRIA 266
IG ++KQ+Y+D++ RIA
Sbjct: 98 IGFDLKQEYVDLSNSRIA 115
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 20/149 (13%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPD------HSLVDAVTDSWD 73
I ++ ++ ++ +V L F PPY N + + R D V+ + +
Sbjct: 128 ICDDARNIANRIAPCTVKLAFTSPPYANILNRKRKNKSRRGDLRQNEQFGKVEQYSQDPN 187
Query: 74 KFSSFE--AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF--------RIGTMLQNLNF 123
+ E ++ A + V + + + + I I +++ +
Sbjct: 188 DLGTLEADDFEKAIAAIFAQMKPVFQEKAHVLINITDAWIDGKRVPLHINIINAMRDAGY 247
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETL 152
N I+W + N + N + +++ T+
Sbjct: 248 EFRNTIIWDRRNLVNNIGIFGWPSSYITM 276
>gi|326576839|gb|EGE26746.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis 101P30B1]
Length = 527
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/199 (11%), Positives = 57/199 (28%), Gaps = 28/199 (14%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 8 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQPKKDYEIATGDRDM 67
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 68 NGQLLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 127
Query: 120 --NLNFWILNDIVWRKSNPMPNFRGRRFQNAHE-----TLIWASPSPKAKGYTFNYDALK 172
+ DI+W + + N + H + + + + + D +
Sbjct: 128 EIFGGENFVADIIWNSTKSVTNTALISVSHTHNLVYFKDIGYFIKNRELFRLKDDGDGFE 187
Query: 173 AANEDVQMRSDWLIPICSG 191
+ D + G
Sbjct: 188 NPDNDPRGAWKADPFQVGG 206
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 182 SDWLIPICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
D + +G++ L+ + + KP +L+ R+L + IILD F GS T+
Sbjct: 278 WDDVETTTNGTQLLKRLFNEKSFFDNPKPISLIKRMLELGSDNKSIILDFFAGSATTAHA 337
Query: 241 AKK------LRRSFIGIEM 253
+ R FI +++
Sbjct: 338 VMQLNAEDNGNRQFIMVQL 356
>gi|324115262|gb|EGC09226.1| DNA methylase [Escherichia fergusonii B253]
Length = 424
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 13/189 (6%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ G++++ L +DL + DPPYN + ++ ++ F
Sbjct: 44 LYIGDNLAYLRSFAETTPNIIDLCYIDPPYNTGNKFIYHDNRKAITSSI------FGKHG 97
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ +F L +LK G + + + + +L + F N I N
Sbjct: 98 EWMSFMLPRLACAHELLKKTGIIAISIDDYEYAYLK-ILMDQIFGEDNFIGCIVVCRSKN 156
Query: 140 FRG--RRFQNAHETLIWASPSPKAK-GYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+G R +HE L+ S KA + D L ++ + G LR
Sbjct: 157 GKGSNRNIATSHEYLLIYGKSSKACLVGLPDDDTLYNKTDEYGHYKIDGLFRKKGEASLR 216
Query: 197 NKDGEKLHP 205
+ +P
Sbjct: 217 SDRPNMFYP 225
>gi|209524713|ref|ZP_03273260.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|209494857|gb|EDZ95165.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 439
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 22 KIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ G+++ VL L + S++LI+ DPP+ + + A D+
Sbjct: 49 RLYFGDNLDVLRLLATEPEICGSINLIYIDPPFAT----ESHFLSRKQSKAYDDT----L 100
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSN 135
+ + F R L+ ++L +G++++ IF I ++ +++ R+
Sbjct: 101 TGAMFVEFLRERLIWLHQLLSNHGSIYLHLDEKMIFHIKLIMDEIFGAENYRNMIVRQKC 160
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
N+ R + + +++ + + Y +N
Sbjct: 161 NPKNYTRRTYGKTADFILFYTK---SDTYIWNQ 190
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 4/158 (2%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
WR P P + + + +K + V ++ WL +
Sbjct: 233 WRGKMPPPGKHWQYPPKTLDEMDARGEIFWSKNGNPRRKVYLNEHSGVGVQDIWLEFRDA 292
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
++ ++ +PT+K LL RI+ +S+ PGD+ILD F GSGTS A+A +++R++IG
Sbjct: 293 YNQNVK----ITGYPTEKNPDLLRRIIAASSNPGDLILDGFAGSGTSLAIADEMQRNWIG 348
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
++ + R + E +
Sbjct: 349 VDHSIEAFKTILNRFEHGIKPMGDFVKSSGSNSEEVYI 386
>gi|312794943|ref|YP_004027865.1| adenine-specific methyltransferase [Burkholderia rhizoxinica HKI
454]
gi|312166718|emb|CBW73721.1| Adenine-specific methyltransferase (EC 2.1.1.72) [Burkholderia
rhizoxinica HKI 454]
Length = 168
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 25/191 (13%)
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
Y + D + A+ + RAWL RR LKP G L + + R+
Sbjct: 3 KYIGSDTKTVYEDFECDNM-NPRAWAFWCRAWLTESRRALKPGGLLVCFIDWRQLPRLTD 61
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+++ + V K+ R F+ E ++WAS +
Sbjct: 62 VMRATGWVQRGIAVCDKTPSRACPRRGGFKQQTELIVWASKGVIRQ-------------- 107
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ + + P G K H T+KP L +I+ + ++ D F GSGT
Sbjct: 108 -RDVYTPGVRPCALGLP--------KRHLTEKPLELARQIVRLA-PADGVVCDLFAGSGT 157
Query: 237 SGAVAKKLRRS 247
AK+ +
Sbjct: 158 FLVAAKEAGLN 168
>gi|313116829|ref|YP_004037953.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
gi|312294781|gb|ADQ68817.1| DNA modification methylase [Halogeometricum borinquense DSM 11551]
Length = 584
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 27/195 (13%)
Query: 36 PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
+SVDLI PPY + +D + + + S E Y L ++
Sbjct: 233 KEESVDLIITSPPYWRKREY---------LDEDDEEFGQESDPEEYVENLVTILDQWKKF 283
Query: 96 LKPNGTLWV-IGSYHNIFRIGTML-------QNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
LKP G++++ IG + + + + ++ + NDI+W K N +P+ R
Sbjct: 284 LKPTGSVFLNIGDTYRYKSLQGIPGLFAEKARKGDWTVRNDIIWTKENGVPSPVDDRLAP 343
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
HE + Y ++ +A + D + R H
Sbjct: 344 RHEHIFHLV--LDRDDYYYDREAYIDLYQTGANPIDVWSMSHDRNTR--------NHLAP 393
Query: 208 KPEALLSRILVSSTK 222
PE L R L +
Sbjct: 394 FPEDLARRALTLACP 408
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+LDPF GSGT+ VA KL G+++ +
Sbjct: 544 GRVLDPFAGSGTTLKVASKLGYHAHGVDLDTSH 576
>gi|218134950|ref|ZP_03463754.1| hypothetical protein BACPEC_02855 [Bacteroides pectinophilus ATCC
43243]
gi|217990335|gb|EEC56346.1| hypothetical protein BACPEC_02855 [Bacteroides pectinophilus ATCC
43243]
Length = 263
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 26/160 (16%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDA 67
++ +I G+++ L+ L K + I+ DPPYN +
Sbjct: 30 SKSYGNPNTENMLIHGDNLLALKALENKYTGMIKCIYIDPPYNTGTAFE----------- 78
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
+D + + L R +L +GT+W+ + + + N
Sbjct: 79 ---HYDDNLEHSIWLGIMKKRLEILRNLLAEDGTIWIQIDDEEQAYLKVLCDEIF--GRN 133
Query: 128 DIVWRKSNPMPNFRG-------RRFQNAHETLIWASPSPK 160
+ V S M N G +R + E ++ + +
Sbjct: 134 NFVNMISVNMKNVAGASGGGEDKRLKKNCEYILVYAKNYD 173
>gi|299145512|ref|ZP_07038580.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_23]
gi|298516003|gb|EFI39884.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_23]
Length = 271
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 72/257 (28%), Gaps = 17/257 (6%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+I D PY N D + A +++ T + + +L
Sbjct: 1 MILCDLPYGTTQNKWDSVIDLQALWA---EYERIIKDNGAIVLTAQGIFTAKLILSKEKL 57
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
++ + ++ + P +
Sbjct: 58 FKYKITWIKSKPTNFLNAKKQPLRKHEDICIFYKKQP-VYNPQMTKGEAYDKGIRKDQYT 116
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSE---RLRNKDGEKLHPTQKPEALLSRILV 218
Y ++ + + +GE HPTQKP L ++
Sbjct: 117 GSYGEFKPQHVKSDGERYPNDVVFFEEDHDDFVYVKTAESEGEVYHPTQKPVELGRYLIR 176
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK----------QDYIDIATKRIASV 268
+ + PGDIILD GSG+ A RSFIGIE DYI I RI+
Sbjct: 177 TFSNPGDIILDNACGSGSFLLSAILENRSFIGIEKNEDVLLHRIQPTDYIKICMDRISET 236
Query: 269 QPLGNIELTVLTGKRTE 285
+ +
Sbjct: 237 LKREEVTPATRKLFKKP 253
>gi|32266743|ref|NP_860775.1| adenine-specific DNA methylase [Helicobacter hepaticus ATCC 51449]
gi|32262794|gb|AAP77841.1| adenine-specific DNA methylase [Helicobacter hepaticus ATCC 51449]
Length = 227
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 25/251 (9%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K+ I +++ + + +K + + +L + ++S+DL F DP Y L+ Y +
Sbjct: 2 SKDLQDIIKSKFREKKLFNTRLKIDGLELLSMIESQSIDLCFFDPQYRGVLDKMKYGNEG 61
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ +L RVLK + L + ++
Sbjct: 62 ERQRGRANLMQMSE------ENIIHFLQEIARVLKLSKYLMLWIDKFHLCEGIHQWLKNT 115
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
+ D++ M G R + E L+ P T+ ++ +
Sbjct: 116 NLQIVDLITWDKQKMG--MGYRTRRQSEYLLILQKKPLKAKGTWERKNIRDIWSEKIPS- 172
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D K+HP KP+ L S ++ S TK G+++LDP GS + +
Sbjct: 173 ----------------DSIKIHPHTKPKGLQSALIESCTKVGEVVLDPASGSFSVLECCR 216
Query: 243 KLRRSFIGIEM 253
+L R FIG +
Sbjct: 217 ELNRHFIGSNL 227
>gi|307564728|ref|ZP_07627256.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
gi|307346450|gb|EFN91759.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
Length = 338
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 9/159 (5%)
Query: 20 KDKIIKGNSISVLEKLPA----KSVDLIFADPPYNLQLNGQLYRPDH----SLVDAVTDS 71
K+ +IKGN+I L+ L +DLI+ DPP+ + S + +
Sbjct: 2 KNLLIKGNNIDGLQLLLDKGYKGKIDLIYIDPPFATGGTFSIDSGGRVATISKSNDANIA 61
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIV 130
+ Y + R + +L G+ ++ Y I ML + +
Sbjct: 62 YTDTLKGRNYLTYIRKRIELLYLLLSDKGSFYLHIDYKIGHYIKVMLDSIFGIENFRNDI 121
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
R NF+ + N + +++ + ++
Sbjct: 122 TRIKCNPKNFQKIGYGNIKDMILFYTKGDNPIWNNPIFE 160
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
++PTQK E LL I+ +S+ I+LD F GSGT+ A +L R +IGI+ + I
Sbjct: 261 IYPTQKNEDLLHFIIKASSSINSIVLDCFAGSGTTLKAANRLGRKWIGIDQSELAIKTIK 320
Query: 263 KRIA 266
+ +
Sbjct: 321 ENLR 324
>gi|167717505|ref|ZP_02400741.1| DNA methylase N-4/N-6 domain protein [Burkholderia pseudomallei
DM98]
Length = 370
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G+ L T KPE+L+ R+L + PGD++ DP+ GSGT+ AVA K R F+GIE +
Sbjct: 275 PGDPLFDTPKPESLIWRVLHIGSDPGDLVFDPYLGSGTTAAVAMKSGRRFVGIESGEHAA 334
Query: 259 DIATKRIAS 267
IA R+
Sbjct: 335 SIAAARMRQ 343
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 17/186 (9%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ + + + ++ G +++V++ + + V + DPPY
Sbjct: 3 PVKKLSYGPADTGNFLVHGENLAVMKSMNAWLSGRVKCAYLDPPYRTGERFT-------- 54
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+D ++ E + A + +L +G++W+ + + L +
Sbjct: 55 ------HYDDDATHEDWLRDVTARVRQTWELLAEDGSVWISIDDCEVHYLKVALDRVIGR 108
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ F N HE L+ + +P+ G T N AL + D
Sbjct: 109 GNFITTIIWQQRTTRENRKVFSNNHEYLLVYAKNPRKFGQTRNGLALTDDIRGRYVNHDN 168
Query: 185 LIPICS 190
Sbjct: 169 DPRGPW 174
>gi|262383519|ref|ZP_06076655.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
2_1_33B]
gi|262294417|gb|EEY82349.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
2_1_33B]
Length = 583
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 17/154 (11%)
Query: 17 FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ K+ +IKG++ ++L +L + + + I+ DPPYN Y + S
Sbjct: 20 EDCKNILIKGDNKAILPELASVYGEKIKCIYIDPPYNNGDTYHYYNDNIST--------- 70
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
A+ R + +++LK +G++W+ + + +
Sbjct: 71 -----SAWLKDMRTVFIWLKQLLKKDGSIWISIDDKEMAYLKIEADKIFGRENFAGTIIW 125
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
F HE ++ + KA + N
Sbjct: 126 QQRKTRENRAVFSCNHEYVLVYAKDIKAFKKSRN 159
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
E++ T KPE L+ +I+ ++ G+ +LD + GSGT+ A A KL+R++IGIE+ ++
Sbjct: 287 EQVFDTPKPEELIKQIIEIASNEGEYVLDCYIGSGTTIATAHKLKRNYIGIEIGDQMTEL 346
Query: 261 ATKRIAS 267
T+R+
Sbjct: 347 VTRRMRK 353
>gi|307636952|gb|ADN79402.1| typeIII restriction modification / methylation subunit
[Helicobacter pylori 908]
gi|325995543|gb|ADZ50948.1| Type III restriction-modification system methylation subunit
[Helicobacter pylori 2018]
Length = 390
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DDHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + L+ + VLK +G +++ + + + ++ N F + N + +
Sbjct: 45 DYEKWIEEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANKIFGMRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP L+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVGLIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
+ + +
Sbjct: 320 QAVIEANKDYY 330
>gi|326571646|gb|EGE21661.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis BC7]
Length = 537
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 22/179 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 8 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRNI 67
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 68 NGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 127
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ L+ + + + L +D
Sbjct: 128 EIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKNKNYDFNSVIERDLSNIKKD 186
Score = 36.2 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ LR+ E KP L+ + IILD F GS T+
Sbjct: 290 NPNYTNHKGTACLRDLLLENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVM 349
Query: 243 K------LRRSFIGIEM 253
+ R FI +++
Sbjct: 350 QLNTEDNGNRQFIMVQL 366
>gi|325997139|gb|ADZ49347.1| Type II DNA modification enzyme/ methyltransferase [Helicobacter
pylori 2017]
Length = 390
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DDHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + L+ + VLK +G +++ + + + ++ N F + N + +
Sbjct: 45 DYEKWIEEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANKIFGMRNFLGIFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP L+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVGLIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
+ + +
Sbjct: 320 QAVIEANKDYY 330
>gi|326569748|gb|EGE19798.1| type III restriction-modification system restriction endonuclease
[Moraxella catarrhalis BC8]
Length = 537
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 22/179 (12%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--------- 68
+ I+ +++ L+ L + +I+ DPPYN + +
Sbjct: 8 NIFIESDNLEALKILQKSYAGKIKMIYIDPPYNTGNDFIYHDDFSQSKKEYEIATGDRNI 67
Query: 69 ---------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+S D + L +L +G +++ + ++ +
Sbjct: 68 NGELLKSFKKNSKDNGHYHSNWLNMMLPRLHLAHTLLSDDGVIFISIDDNEQAQLKLLCD 127
Query: 120 -NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ R+++ + + H+ L+ + + + L +D
Sbjct: 128 EIFGGENFVATLPRQTSAQRPSQEKYISITHDYLLVYAKNKNYDFNSVIERDLSNIKKD 186
Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ LR+ E KP L+ + IILD F GS T+
Sbjct: 290 NPNYTNHKGTACLRDLLLENYFDFSKPLDLIKILAKLLNGDNSIILDFFAGSATTAHAVM 349
Query: 243 K------LRRSFIGIEM 253
+ R FI +++
Sbjct: 350 QLNTEDNGNRQFIMVQL 366
>gi|258620562|ref|ZP_05715599.1| DNA methylase N-4/N-6 domain protein [Vibrio mimicus VM573]
gi|258587077|gb|EEW11789.1| DNA methylase N-4/N-6 domain protein [Vibrio mimicus VM573]
Length = 713
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 13/191 (6%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G + L+ L +D I+ DPPYN Y D +S D +
Sbjct: 140 HSVINGENYHALKALTFTHRGKIDAIYIDPPYNTGARDWKYNND------YVESEDLYR- 192
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ AF L + +L PN ++ + R+G +L+ ++ N
Sbjct: 193 HSKWLAFMERRLKLAKELLNPNNSVLIATIDEKEYLRLGLLLEQTFPEANVQMISTVINS 252
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC--SGSER 194
R F E + +T + + + L SG++
Sbjct: 253 QGTPRKGAFSRVDEYIYIVQLGECTVSWTNDDMLTISDAGNRPAHKPQLWYPVLRSGTDP 312
Query: 195 LRNKDGEKLHP 205
R + +P
Sbjct: 313 FRENAPNQFYP 323
Score = 36.2 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 18/161 (11%)
Query: 90 LACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
R L + +V Y I R+ Q ++ + R GR +
Sbjct: 367 KESRWQLGRDTFQEYVDKGYVKIGRMSNKGQRSVTYLRKGTIDRIKKGEICITGRASNGS 426
Query: 149 HE-TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
E ++ +A +N GS+ +R ++ P
Sbjct: 427 VELEIVNLEKRSRAPKSVWNR--------------VSHEAGEYGSKLIRKLLPDRKFPFP 472
Query: 208 KPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRR 246
K + +L K +LD F GSGT+ +L R
Sbjct: 473 KSLYAVEDVLRFFLLEKKEATVLDFFSGSGTTLHAVLRLNR 513
>gi|33770568|ref|NP_892105.1| DNA adenine-methylase [Yersinia phage PY54]
gi|33636151|emb|CAD91820.1| DNA adenine-methylase [Yersinia phage PY54]
Length = 357
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
++ +S+ ++ LP +D I DPPY ++SWD +++S +
Sbjct: 12 LVHADSLQYIKTLPDNYIDAIITDPPY---------------YRVKSNSWDNQWASVPDF 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ + RVLKPNG+L++ + +L F +LN IVW K +
Sbjct: 57 LAWLDEFFAEFWRVLKPNGSLYLFCGP-KLSADTEILMRDRFNVLNHIVWAKPSGRWKGA 115
Query: 142 GRRFQNAHE 150
+ ++
Sbjct: 116 SKESFRSYF 124
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+++ G+ HP +KP ++ I+ +ST+PGD++ D F GSG + A++L
Sbjct: 273 HTNVWTYPPVQHYPGK--HPCEKPLPMMLDIIAASTRPGDLVADFFMGSGATIKAAEQLG 330
Query: 246 RSFIGIEMKQDYIDIATKRIA 266
R +G+E++++ +
Sbjct: 331 RRSLGVELEEERFLQTVSELK 351
>gi|291568623|dbj|BAI90895.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 310
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 27/209 (12%)
Query: 22 KIIKGNSISVLEKLPAK-----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ G+++ VL L + S++LI+ DPP+ + + A D+
Sbjct: 49 RLYFGDNLDVLRLLATEPEICGSINLIYIDPPFAT----ESHFLSRKQSKAYDDT----L 100
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSN 135
+ + F R L+ ++L +G++++ IF I ++ +++ RK
Sbjct: 101 TGAVFVEFLRERLIWLHQLLSNHGSIYLHLDEKMIFHIKLIMDEVFGAENYRNMIVRKKC 160
Query: 136 PMPNFRGR----------RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
N+ R + + + P ++ Y ++ M+
Sbjct: 161 NPKNYTRRTYGKTADFILFYTKSDTYIWNQPKVPLSENSKKEYQYIEPETGRKFMKVPLH 220
Query: 186 IPICSGSERLRNKDGEKLHP---TQKPEA 211
P E + G+ P Q P
Sbjct: 221 APGVRHGETGKPWRGKMPPPGKHWQYPPK 249
>gi|270265278|ref|ZP_06193539.1| hypothetical protein SOD_m00100 [Serratia odorifera 4Rx13]
gi|270040682|gb|EFA13785.1| hypothetical protein SOD_m00100 [Serratia odorifera 4Rx13]
Length = 342
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
++I ++ + ++ LP S+DLI DPPY + WD ++ +
Sbjct: 6 RLINADTTAFIKTLPDNSIDLIATDPPY---------------FRVKSCDWDNQWENEAE 50
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
Y A+ A L+ RVLKPNG+L++
Sbjct: 51 YLAWLDALLVEFWRVLKPNGSLYMFCGSR 79
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP ++ I+ +S++PG+++ D F GSG++ A KL R +G+E++ D + +
Sbjct: 277 HPCEKPAEMMEHIISASSRPGEVVADFFMGSGSTIKAAIKLGRIGLGVELEPDRFEQTQR 336
Query: 264 RI 265
I
Sbjct: 337 EI 338
>gi|256848295|ref|ZP_05553738.1| LOW QUALITY PROTEIN: DNA methylase [Lactobacillus coleohominis
101-4-CHN]
gi|256714893|gb|EEU29871.1| LOW QUALITY PROTEIN: DNA methylase [Lactobacillus coleohominis
101-4-CHN]
Length = 521
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 21/199 (10%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
SI + + IIKGN++ L L S LI+ DPPYN + + +++
Sbjct: 44 SINDNTNLIIKGNNLIALYSLLNRYKNSAKLIYLDPPYNTKSAANTFLYNNTY------- 96
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIV 130
+ ++ F + L ++++K +G + + +F +G ++ ++
Sbjct: 97 -----NHSSWLTFMKNRLEVSKKLVKYDGFIVAAIDSNELFYLGVLMDEIFGADNRLSVL 151
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
NP F +AHE LI + S +E+ + + +
Sbjct: 152 AVVHNPGGRQDEEFFPSAHENLIVFAKSKLLAKL-----NNLPISEEKKKQYKFQDKYGR 206
Query: 191 GSERLRNKDGEKLHPTQKP 209
R + G TQ+P
Sbjct: 207 YKLRGFRRSGNNSLKTQRP 225
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%)
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + Y ++ + + + + L
Sbjct: 262 CWRWGSSTLMEKKEKYIEIKPKGDSFEVYVKERESDYQGEKAKSLWEKPEYTGQNATHTL 321
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ G+K+ K E ++ ++ T P D+++D F GS T+ AVA K+ R FIGIE
Sbjct: 322 KTLFGKKVFTYPKSEFVMRDLIQVCTNPNDLVIDFFMGSATTPAVAMKMHRRFIGIEQMD 381
Query: 256 DYIDIATKRIAS 267
I+ R+
Sbjct: 382 YINTISVPRLQK 393
>gi|315655129|ref|ZP_07908031.1| type III restriction/modification enzyme [Mobiluncus curtisii ATCC
51333]
gi|315490610|gb|EFU80233.1| type III restriction/modification enzyme [Mobiluncus curtisii ATCC
51333]
Length = 677
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 197 NKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++G P +KPE+L+ RIL+ +T+PGDI+ D F GSGT+ AVA K+ R +IG+E
Sbjct: 480 TREGNVAFPNGKKPESLIERILLLTTQPGDIVCDFFLGSGTTAAVAHKMGRRYIGVEQMD 539
Query: 256 DYIDIATKRIAS 267
+ R+
Sbjct: 540 YVSTVTIPRLQK 551
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 18/171 (10%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
V I+ DPPYN + D + + + F + L R++L
Sbjct: 192 EGQVKCIYIDPPYNTGTDSF----------GYNDRF----NHSTWLTFMKNRLGLARQLL 237
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE----TL 152
+ +G ++V + + ++ + V + G + +
Sbjct: 238 RADGFIFVQSDDNEQAYLKVLMDEIFGTENFINVISVKTKVGGVSGSSQGKSLRDELEYI 297
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
S + N + ++ + L +KL
Sbjct: 298 NMYYKSRMDENAVINPTYVFTKLDEHIRAYQESGRSWKYTSVLTQLGEKKL 348
>gi|114566985|ref|YP_754139.1| adenine specific DNA methylase Mod-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337920|gb|ABI68768.1| Adenine specific DNA methylase Mod-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 633
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 10/162 (6%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ I++G+++ L L +D+I+ DPPYN + D D + D F
Sbjct: 84 NFILEGDNLHSLRLLEKTHKGRIDVIYIDPPYNRG------KDDFVYDDDYVGTEDSFK- 136
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ +F L ++L +G ++V + + ++ ++ I +
Sbjct: 137 HSKWLSFMEKRLRIAYQLLSEDGLMFVSIDDNEQAALKNLIDDIFSEDNFIIAMPRITKK 196
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
F H+ ++ + K + + ED
Sbjct: 197 SGKTTGSFSKNHDYVLVYTKQNKDIFVMEEHIDPAFSYEDEW 238
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/222 (15%), Positives = 61/222 (27%), Gaps = 24/222 (10%)
Query: 68 VTDSW----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
D W K+ + D + ++ + L +G + G ++ +
Sbjct: 234 YEDEWVGERGKYKLNQTLDYDSLSYSASLDYPLTVDGETFYPGGDKALWEERQRGNHRRA 293
Query: 124 WILNDIVWRKSNPMPNF-----RGRRFQNAHETLIWA-----SPSPKAKGYTFNYDALKA 173
+ N + + +A Y K
Sbjct: 294 DWAWRWNPKLFEFGYNNGFVVIKRKPDGSARIYTKTYLNAKIQKDGNGGYYIEYTKRTKP 353
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ + + + + L KP L+ R++ + IILD F G
Sbjct: 354 LSSIGLVDNMYSNDNA--KKDLAEFGLGDEFEYSKPVELIKRLIKNHYNKNGIILDFFAG 411
Query: 234 SGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIAS 267
SGT+ +L R FI Q+ I I KR
Sbjct: 412 SGTTAQAVLELNVEDGGHRQFILCTNNQNNICEKITYKRCRD 453
>gi|315295556|gb|EFU54880.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
Length = 159
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 41/198 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P +D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNGIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
HE + A D L G
Sbjct: 105 AAYVGYRHECAYVLAKGRPALPQKPLPDVLGW-----------------------KYSGN 141
Query: 202 KLHPTQKPEALLSRILVS 219
+ HPT+KP L ++ S
Sbjct: 142 RHHPTEKPVTSLQPLIES 159
>gi|153873450|ref|ZP_02002029.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
gi|152070084|gb|EDN67971.1| DNA methylase N-4/N-6 [Beggiatoa sp. PS]
Length = 686
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 73/219 (33%), Gaps = 8/219 (3%)
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
C + + N + + + + + + M N+ +
Sbjct: 82 FHHCWFEVHDGNRHRMTPKQLNNHELLPLNARIYRLKSLEPSGKMDSGMFNYEFKGITYK 141
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG--EKLHPT 206
H +++ + + N + P + + + G K +
Sbjct: 142 HPKNGFSTKWEGMERLEKSSRLQPEGNRLNFIMYAEENPASTLTAPWNDTVGADNKNYVV 201
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
Q ++ R L+ +T PGD++LDP GSGT+ VA++ R +I + + + +A R+
Sbjct: 202 QTNTKVIQRCLLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITCDTSRVALSLARTRLM 261
Query: 267 SVQ------PLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
+ + + +T P V + I
Sbjct: 262 TAKFPYYQLKDTKEGIKQGFIYKTVPHVTLKAIANNKEI 300
>gi|323181044|gb|EFZ66580.1| DNA modification methylase-like protein [Escherichia coli 1180]
Length = 123
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + R ++ V D W + +S
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRD---RSGRTIAGDVNDDWLQPASN--- 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
RVLK + + +H I R F + +V+ N P
Sbjct: 57 ---------EMYRVLKKDALMVSFYGWHRIDRFMAAWIRAGFSVAGHLVFIDRNLNPKKI 107
Query: 142 GRRFQNAHETLIWASP 157
+ +N P
Sbjct: 108 KKTPKNGCLFNTACVP 123
>gi|22091186|ref|NP_666000.1| M.PhiCh1-III [Natrialba phage PhiCh1]
gi|22003507|gb|AAM88756.1|AF440695_82 putative N4-cytosine methyltransferase [Natrialba phage PhiCh1]
Length = 448
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
I EW I +G++ VL +LP SV + PPY + V
Sbjct: 2 ISEWTGDIHEGDAEEVLAELPESSVHCVVTSPPYFGHRDY-----------GVDGQIGLE 50
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
S + + RRVL+ +G+ W+
Sbjct: 51 DSLDEFIESLVDVASEIRRVLRDDGSWWL 79
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T PG I+LDPF G+GT+ VAK+ R FIG+++ +++ +A +RI
Sbjct: 377 TNPG-IVLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQQRI 420
>gi|237726742|ref|ZP_04557223.1| methyltransferase [Bacteroides sp. D4]
gi|229435268|gb|EEO45345.1| methyltransferase [Bacteroides dorei 5_1_36/D4]
Length = 667
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ I+G+++ VL+ L V +I+ DPPYN + ++ F
Sbjct: 99 NLYIEGDNLDVLKVLRETYLGKVKMIYIDPPYNTGNDFVYNDDFAQSKGEFEETSGLFDE 158
Query: 78 -------------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ L R +L +G +++ + + + +
Sbjct: 159 EGNQTIDPMQRNTESNGRFHTDWLNMIYPRLKVSRDLLSDDGVIFISIDDNEMENLKKIC 218
Query: 119 Q 119
Sbjct: 219 N 219
>gi|319792670|ref|YP_004154310.1| DNA methylase n-4/n-6 domain protein [Variovorax paradoxus EPS]
gi|315595133|gb|ADU36199.1| DNA methylase N-4/N-6 domain protein [Variovorax paradoxus EPS]
Length = 388
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 79/241 (32%), Gaps = 59/241 (24%)
Query: 17 FEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+W ++ G+ VL ++ A V I PPY L L + V +
Sbjct: 1 MDWLNRCHFGDVRMVLRRMIADGVQVHTIVTSPPYW-GLRSYLPAGHPNKVHEI----GS 55
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--------------------------- 107
+ + A CR+VL+ +GT+WV
Sbjct: 56 EPTLAEFLAGMVEVFDLCRQVLRDDGTMWVNMGDSYAASSLSNHGRGKATPATNSRGALQ 115
Query: 108 ----YHN------------------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
+ N +R+ LQ+ +W+ D++W K NPMP R
Sbjct: 116 PGAAWENPPRRMPGEGLKSKDLVGQPWRLAFALQDAGWWLRQDVIWHKPNPMPESIRDRC 175
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
AHE + + ++ Y ++++A++ + + SG + H
Sbjct: 176 TKAHEYIFLLAK---SERYYYDFEAMQEPVQGTAHARRAMPKHPSGWAQGDAPHTAAAHQ 232
Query: 206 T 206
T
Sbjct: 233 T 233
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ ++ H P L+ +++ G +LD FFGSGT+G VA+ L R+FIGIE+
Sbjct: 308 VPSEPYSGAHFATFPRKLIEPCILAGCPVGGTVLDIFFGSGTTGEVAQALGRNFIGIELN 367
Query: 255 QDYIDIATKRIAS 267
+ R+
Sbjct: 368 AANESLQADRLRQ 380
>gi|283954854|ref|ZP_06372370.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
jejuni 414]
gi|283793694|gb|EFC32447.1| site-specific DNA-methyltransferase [Campylobacter jejuni subsp.
jejuni 414]
Length = 181
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 17/185 (9%)
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ F L+ + + + V S+ + + + F ++V++K +
Sbjct: 1 MAEFMHFCSKMLIKEPKECGKSPCMIVFCSFEQQTILIEVAKKYGFNHYINLVFKKPSSS 60
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + + + K N+ + + ++
Sbjct: 61 QVLKANM---------KIVGNCEYALILYRDKLPKFNNDGKMIYNCMDWQ--------KD 103
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ K+HPTQKP LL R+++ T GD+++DP GSG++ A L R G E+K+++
Sbjct: 104 EGIPKVHPTQKPVKLLERLIIIFTDVGDVVIDPCAGSGSALLAATNLNRKAYGFEIKKEF 163
Query: 258 IDIAT 262
D A
Sbjct: 164 FDGAN 168
>gi|296491995|ref|YP_003662464.1| putative DNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
gi|289176884|emb|CBJ93055.1| putative DNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
Length = 434
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/264 (17%), Positives = 77/264 (29%), Gaps = 39/264 (14%)
Query: 36 PAKSVDLIFADPPYN--LQLNG--------------------QLYRPDHSLVDAVTDS-- 71
+ V L PP+ +Q + P S+V V++
Sbjct: 143 LDEPVHLCVTSPPFPLRIQRGYGNVDEAKWVDFITQALEPIVKNLVPSGSVVLNVSNDIF 202
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
K S Y L + + W+ S + + V+
Sbjct: 203 EAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTQWACVNRYQLCSGWEPVY 262
Query: 132 RKSNPMPNFRGRR------FQNAHETLI-----WASPSPKAKGYTFNYDALKAANEDVQM 180
+N R H+ L+ S Y +A E
Sbjct: 263 WFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDSRVVSYGDGAYRLRGNAFSNVTEGRIP 322
Query: 181 RSDWLIPICSGS----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
++ R+ + G HP P + + T+ GD+I+DPF GS
Sbjct: 323 KNVIQRGHRCADTLELRRIAKELGLPPHPAMFPTDIPEMAIRFLTEEGDLIVDPFSGSNK 382
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDI 260
SG A++ R +I ++ +YI
Sbjct: 383 SGLAAERNNRRWIACDIILEYIRT 406
>gi|261365259|ref|ZP_05978142.1| type III restriction-modification system StyLTI enzyme mod
[Neisseria mucosa ATCC 25996]
gi|288566347|gb|EFC87907.1| type III restriction-modification system StyLTI enzyme mod
[Neisseria mucosa ATCC 25996]
Length = 655
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 38/222 (17%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
+ I+ ++ L+ L SV +I+ DPPYN + +Y R +++ TD
Sbjct: 122 NVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGSDSFIYPDKFSESREEYARRVGDTD 181
Query: 71 S-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
W D + + L + +L+ +G +++ +
Sbjct: 182 DAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQA 241
Query: 113 RIGTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY---TFN 167
++ + + L +++W+K N H+ +I + +
Sbjct: 242 QLKLLCDEVFGAENFLANLIWQKKYAATNDAKGFSTL-HDYIIVYQKGSEFERNLLPRTE 300
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
N+D D S + +++ ++P + P
Sbjct: 301 AQNKPYKNDD----GDGKGLWRSDNLLVKSFSASAVYPIRNP 338
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
+ + T KP LL ++L + P D+ILD F GSGT+ +L R FI ++
Sbjct: 417 NSKAPFDTPKPTTLLLQMLKIGSNPNDLILDFFSGSGTTAHAVMQLNAEDGGSRRFICVQ 476
Query: 253 MKQDYIDIATKRIASVQ 269
+ ++ + + R A
Sbjct: 477 LPEETDEKSEARKAGFN 493
>gi|29566890|ref|NP_818455.1| gp155 [Mycobacterium phage Omega]
gi|29425615|gb|AAN12797.1| gp155 [Mycobacterium phage Omega]
Length = 436
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 20 KDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+K I G+ VL P SVD I DPPY L G+ WD
Sbjct: 1 MNKVDIRLGDCRGVLASFPDASVDAILTDPPYELGFMGK--------------KWDGSG- 45
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
AF C RVLKP G L G R+ +++ F I + I W +
Sbjct: 46 ----IAFDVEMWEQCLRVLKPGGHLLAFGGSRTWHRLTVAIEDAGFEIRDSIAWLYGSGF 101
Query: 138 P 138
P
Sbjct: 102 P 102
Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 197 NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
N+DG K+ H T KP L+ + PG +ILDPF GSGT+ I IE +
Sbjct: 362 NEDGAKVMHSTVKPLTLMRWLARLVCPPGGVILDPFAGSGTTVEACLLEGFDCIAIESEA 421
Query: 256 DYIDIATKRIAS 267
DYI + +RI
Sbjct: 422 DYIPLIEQRIER 433
>gi|289594298|ref|YP_003482305.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
gi|289533395|gb|ADD07743.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
Length = 459
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
I EW I +G++ VL +LP SV + PPY + V
Sbjct: 13 ISEWTGDIHEGDAEEVLAELPESSVHCVVTSPPYFGHRDY-----------GVDGQIGLE 61
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
S + + RRVL+ +G+ W+
Sbjct: 62 DSLDEFIESLVDVASEIRRVLRDDGSWWL 90
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T PG I+LDPF G+GT+ VAK+ R FIG+++ +++ +A +RI
Sbjct: 388 TNPG-IVLDPFAGAGTTCLVAKRFGRRFIGVDLNPEFVAMAQQRI 431
>gi|108563739|ref|YP_628055.1| adenine-specific DNA methylase [Helicobacter pylori HPAG1]
gi|107837512|gb|ABF85381.1| adenine-specific DNA methylase [Helicobacter pylori HPAG1]
Length = 367
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 46/84 (54%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ KL T KPE LL RIL STK D++ D F GSGT+ AVA K++R +IG+EM + +
Sbjct: 184 NNVKLFDTPKPEVLLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGEHFE 243
Query: 259 DIATKRIASVQPLGNIELTVLTGK 282
+ R+ V + K
Sbjct: 244 RVILPRLKKVIGGFKSGVLKEFNK 267
>gi|15644888|ref|NP_207058.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
26695]
gi|2313354|gb|AAD07328.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
26695]
Length = 384
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DDHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G L++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCLFISMDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ R +
Sbjct: 320 QAVIEVNRDYC 330
>gi|150401965|ref|YP_001329259.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
maripaludis C7]
gi|150032995|gb|ABR65108.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C7]
Length = 325
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/216 (17%), Positives = 72/216 (33%), Gaps = 16/216 (7%)
Query: 53 LNGQLYRPDHSLVDAVTDSW-DKFSSFEAYDAFTRAWLLACR-RVLKPNGTLWVIGSYHN 110
+ + + ++SL + + + + F Y F + L NG
Sbjct: 124 YSNEFRKNNNSLNNPMYREYVETFKPIIEY--FMEEKEKIMKLHNLSTNGDFIRFMDE-- 179
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ P+ + + H +
Sbjct: 180 --------YMQSTTPARHHFSWSQWSFPSEK-TYAKLQHIGDGILEKEYPLFRKHYEELK 230
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + + + S+ + HPTQKP L ++ ++TKP ++L P
Sbjct: 231 NQFESSRRYFVNSEHTDVLFFSQESH-ITRKYNHPTQKPPKLTKMLIEATTKPESLVLVP 289
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
F GSG K+L R+FIG E+ ++Y +IA R+
Sbjct: 290 FVGSGVECVTCKELERNFIGFEIDENYFEIAKNRLN 325
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 18/187 (9%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I + ++KL SVDLI ADPPY + +D +F+
Sbjct: 3 LNEIYNQDFFEGVKKLSNNSVDLIIADPPYY----------------NIKGDFDFKLNFD 46
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-P 138
+ +RVLK NG++ + G NI + +L F N + +
Sbjct: 47 EWKILHEKMAKEFKRVLKLNGSILLYGHARNIAYQQVIFDDLFFLENNLVWHKTDCQTRK 106
Query: 139 NFRG-RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
N +G R F E +++ S + + N + E + ++ + +L N
Sbjct: 107 NIKGYRCFAPVTERILFYSNEFRKNNNSLNNPMYREYVETFKPIIEYFMEEKEKIMKLHN 166
Query: 198 KDGEKLH 204
Sbjct: 167 LSTNGDF 173
>gi|29566483|ref|NP_818049.1| gp76 [Mycobacterium phage Che9d]
gi|29425208|gb|AAN07994.1| gp76 [Mycobacterium phage Che9d]
Length = 224
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/252 (17%), Positives = 80/252 (31%), Gaps = 49/252 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G+ + + E L A D++ DPP W +
Sbjct: 11 TLYHGDCLEITEWLAA---DVLVTDPP-------------------YGRDWKQGE----- 43
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
LK N T L W + +
Sbjct: 44 --------------LK-GHFTANRSGIQNDSSTDTRDYALQLWGDRQAIVFGDLMLAPPI 88
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD-- 199
G + + A GY + +A+ + + S +
Sbjct: 89 GTKHVLVYRKPSNAGLRGAVGGYRRDAEAVYLIGPGHGSGIGGESSVIATSAAMMGGSTG 148
Query: 200 --GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G HP +KP +L R+L S++ ++ DPF GSG++ A+ L R IG+E+++ Y
Sbjct: 149 LGGRTGHPHEKPLDVLERLLDSTS---GVVADPFAGSGSTLVAARNLGRRAIGVELEERY 205
Query: 258 IDIATKRIASVQ 269
+I +R+ +
Sbjct: 206 CEIIARRLDQMC 217
>gi|207110827|ref|ZP_03244989.1| putative type III DNA modification enzyme (methyltransferase)
[Helicobacter pylori HPKX_438_CA4C1]
Length = 81
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ + T KPEAL+SRIL +T D++LD F GSGT+ AVA K++R +IGIE
Sbjct: 9 NDSSVFDTPKPEALISRILEIATNENDLVLDFFAGSGTTCAVAHKMKRHYIGIEQMDYIE 68
Query: 259 DIATKRIAS 267
I +R+
Sbjct: 69 TITKERLKK 77
>gi|171920243|ref|ZP_02931612.1| type III restriction-modification system methylation subunit
[Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|171902642|gb|EDT48931.1| type III restriction-modification system methylation subunit
[Ureaplasma parvum serovar 1 str. ATCC 27813]
Length = 622
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 70/204 (34%), Gaps = 24/204 (11%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ IIKGN++ L + + I+ DPPYN + Y DKF +
Sbjct: 139 NLIIKGNNLIALASILNRYENKIKCIYIDPPYNTGNDSFNYN-------------DKF-N 184
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ------NLNFWILNDIVW 131
+ F + L +++L+ +G ++V + + ++ N + + ++
Sbjct: 185 HSTWLVFMKNRLELAKKLLRDDGVIFVQCDDNEQAYLKVLMDEVFGRENFSTTLHVELST 244
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF-NYDALKAANEDVQMRSDWLIPICS 190
+ + + + E ++ + K +T +D+ + S
Sbjct: 245 TQGMKVGAAQKGQIVKNGEYILIYHKNYNLKFFTNLIFDSKSWDSHYSIYIDPITNKRTS 304
Query: 191 GSERLRNKDGEKLHPTQKPEALLS 214
++ K +K E L
Sbjct: 305 LLNFIKENTKYKDITKEKIEELYE 328
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 15/240 (6%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSS-----------FEAYDAFTRAWLLACRRVLK 97
YNL+ L S + D ++ Y T+ +
Sbjct: 272 YNLKFFTNLIFDSKSWDSHYSIYIDPITNKRTSLLNFIKENTKYKDITKEKIEELYEF-D 330
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + +NIF+ + N ++ + + + F+ + + P
Sbjct: 331 DDFRSLIHNHSNNIFQDAMIDIKFNLSEEDNFKLKNNEIIKFKDYLIFKTSTNVIRQLLP 390
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
KA G T ++D+ ++R +W + + +KPE L+ I+
Sbjct: 391 LEKAIGPTDDFDSKFGL---RKIRGNWWPNFYKDMMNINKEANFVWKSGKKPERLIKDII 447
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
STK DI+LD GSGT+ AVA K+ R +IGIE +I +R+ V ++
Sbjct: 448 KLSTKQNDIVLDFHLGSGTTCAVAHKMNRQYIGIEQMDYIENITIERLKKVIDGEQSGIS 507
>gi|307638042|gb|ADN80492.1| type II DNA modification enzyme [Helicobacter pylori 908]
gi|325996646|gb|ADZ52051.1| Type III restriction-modification system methylation subunit
[Helicobacter pylori 2018]
gi|325998235|gb|ADZ50443.1| Type III restriction-modification system methylation subunit
[Helicobacter pylori 2017]
Length = 243
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 187 PICSGSERLR-----NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
G E L+ N+ E + KPEALL RIL ST+ D++ D F GSGT+ AVA
Sbjct: 43 YNQQGKEELKKLFDINEGRETIFNNPKPEALLQRILEISTQENDLVCDFFAGSGTTCAVA 102
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
KL+R +IG+EM + + + R+
Sbjct: 103 HKLKRKYIGVEMGEHFESVILPRLKK 128
>gi|148926992|ref|ZP_01810668.1| adenine specific DNA methyltransferase (mod) [Campylobacter jejuni
subsp. jejuni CG8486]
gi|145844400|gb|EDK21509.1| adenine specific DNA methyltransferase (mod) [Campylobacter jejuni
subsp. jejuni CG8486]
Length = 637
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 28/173 (16%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV---- 65
+ K+ IIKG+++ L+ L + + + +I+ DPPYN + + +Y D
Sbjct: 87 SKNFETTKNAIIKGDNLHALKLLKSAYYEKIKMIYIDPPYNTKNDKFIYNDDFVKEHKKL 146
Query: 66 -------------DAVTDSWDKF-------SSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
+ + F S A+ F L R +L+ +G +++
Sbjct: 147 LIEVGLLEITEEGEEIRSEILNFFINTRGDRSHSAWLGFMLPRLKLARDLLREDGVIFIS 206
Query: 106 GSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + + + +F G+ + E ++
Sbjct: 207 IDDNEQANLKILCDEIFGEENFVANIVWHKKDNASFLGKNIVDLIEYILIYRK 259
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK------KLRR 246
E ++ + KP L+ + + + TK DIILD F GSGT+ R
Sbjct: 404 EEIKKIFELPIFNYSKPSKLIKKFIKNVTKNDDIILDFFAGSGTTAQAVMELNAEDNGNR 463
Query: 247 SFIGIEMKQD 256
FI +++ +
Sbjct: 464 KFILVQLDEK 473
>gi|207108936|ref|ZP_03243098.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori HPKX_438_CA4C1]
Length = 259
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 64/177 (36%), Gaps = 24/177 (13%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ N I + + +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D
Sbjct: 83 KKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDD 142
Query: 62 HSLVDA--------VTDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D + + +F LL + +LK +G +++
Sbjct: 143 FSQSNEEVLKQLDYSKEKLDYIKNLFGSKCHSGWLSFMYLRLLLAKDLLKQDGVIFISID 202
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
+ ++ + + P + + HE ++ + K
Sbjct: 203 DNECAQLKLLCDEIFGEGNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKK 259
>gi|154500150|ref|ZP_02038188.1| hypothetical protein BACCAP_03811 [Bacteroides capillosus ATCC
29799]
gi|150271106|gb|EDM98375.1| hypothetical protein BACCAP_03811 [Bacteroides capillosus ATCC
29799]
Length = 244
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 20/152 (13%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG----QLYRP 60
+ E+ ++ I+G+++ VL+ L V +I+ DPPYN + + R
Sbjct: 85 PVKEDSRDWDTTQNLYIEGDNLEVLKILQESYLGKVKMIYIDPPYNTGHDFIYRDKFQRS 144
Query: 61 DHSLVDAV----TDSWDKFSSFEAYDAFTRAW-------LLACRRVLKPNGTLWVIGSYH 109
+ + D F + E+ F W L+ R +L +G +++
Sbjct: 145 QQEENEQMGLYDEDKNQMFENVESNGRFHSDWCSYIYRPLVLARNLLSEDGIIFISIDDG 204
Query: 110 NIFRIGTMLQNLN--FWILNDIVWRKSNPMPN 139
+ + M + L +++W K + N
Sbjct: 205 EVGNLRKMCDEIFGANNFLANLIWEKKYTVAN 236
>gi|4454667|gb|AAD20952.1| methyltransferase [Mannheimia haemolytica]
Length = 706
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/307 (12%), Positives = 88/307 (28%), Gaps = 26/307 (8%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---- 54
+ K E ++ I+G ++ VL+ SV +I+ DPPYN +
Sbjct: 114 TSKTLTPCEEESVDFENTQNIFIEGENLDVLKDPQKSYFNSVKMIYNDPPYNTGNDFIYN 173
Query: 55 --------------GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
G + V +S + + L + +L+ +G
Sbjct: 174 DSFADTKADYAEKVGDVDEHGKLKRAFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDG 233
Query: 101 TLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
+++ + ++ + I+ ++NP + +++ I + +
Sbjct: 234 VIFISIDDNEQAQLKLLCDEVFGEENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNK 293
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
+ + N +D+ + SG L ++ T +
Sbjct: 294 EMGKFVENIPKNA---KDMCQDENGHYVHASGKRVLVGENKFNQPVTDFTSD-KHYSVYF 349
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
+ DIIL ++++ R ++ + L
Sbjct: 350 NKLDDDIILKFEDSLDDKDLNLINQGYVRYISFFDDEFVENTYTRFKFLELFEDESLEFT 409
Query: 280 TGKRTEP 286
K E
Sbjct: 410 EDKIYEK 416
>gi|71899324|ref|ZP_00681485.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
gi|71730950|gb|EAO33020.1| DNA methylase N-4/N-6 [Xylella fastidiosa Ann-1]
Length = 196
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 24/183 (13%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI-LNDIVWRKSNPMPNFRGRRFQ 146
+ R+L+ +G ++ + + ++ + I+ + N NF F
Sbjct: 35 VITEMMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFL 94
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
+E + + N G ++ + HP
Sbjct: 95 PTYEVIYLIAKPDFKLKPKAN---------------------AIGDVWTIPQESKNPHPA 133
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
P L R + S +LDPF GSGT A+ L ++GIE Y++++ R+
Sbjct: 134 PFPVELAQRCIESVGAE--PVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLK 191
Query: 267 SVQ 269
S++
Sbjct: 192 SLK 194
>gi|302390120|ref|YP_003825941.1| DNA methylase N-4/N-6 domain protein [Thermosediminibacter oceani
DSM 16646]
gi|302200748|gb|ADL08318.1| DNA methylase N-4/N-6 domain protein [Thermosediminibacter oceani
DSM 16646]
Length = 851
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/326 (15%), Positives = 94/326 (28%), Gaps = 55/326 (16%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR--------------PDHSLV 65
+IK + L + + V I+ DPP+N + + Y SL
Sbjct: 406 LIKSENWQALNTILPKFKEKVQTIYIDPPFNKEQDADYYYTVKFKDSTWITMLENRISLG 465
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWL----------------------------------LA 91
+ + Y+ L +
Sbjct: 466 KELLNKRGSIFVRCDYNGNMYVRLLMNKVFGEENFRNEIVVNRTKKIFAGVRGYNVATDS 525
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
K + +V + + + +GR + E
Sbjct: 526 LFFYSKDSDFYFVPQYKQREGKQKWINMHSPGERRPPERIILGRLFYPPKGRHWTFVQER 585
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK---LHPTQK 208
+ + + Y N+ M + + G PT+
Sbjct: 586 IAELERQGRIRIYEEAEYIDMLGNKVQGMPQYLTGEMELLDSSWTDIPGYSQICGFPTEN 645
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
E LL R++ S++K GD+++D F GSGT+ AVA KL+R +IG+EM + + + R+ V
Sbjct: 646 SEILLKRVIESTSKEGDLVMDFFLGSGTTTAVAHKLKRKWIGVEMGEHFYTVVLPRMKKV 705
Query: 269 QPLGNIEL-TVLTGKRTEPRVAFNLL 293
+ K
Sbjct: 706 LFYDKSGISKEKDVKERYNEKNAGGF 731
>gi|19908853|gb|AAM03023.1|AF472611_4 M.BcnIA [Brevibacillus centrosporus]
Length = 294
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 8/147 (5%)
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+N H + + + + L ER R+ +
Sbjct: 3 KSNVKNNHLDIGYERLCVCPTKHINCM-------TGKEWMKSQLGVWRFTYER-RDIRDK 54
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K+HP P +L + + T G++++DPF GSGT+ A+ R+ +G ++K++YI +
Sbjct: 55 KVHPAVYPISLAKKCIELFTHQGELVIDPFVGSGTTLVAAQDSNRNAVGFDLKEEYISLC 114
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRV 288
R+ + L N+ + K +
Sbjct: 115 QIRLEENRNLLNVNTNQIAIKDNAKNI 141
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 19/165 (11%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEK-LPAKSVDLIFADPPY----NLQLNGQLYRPD 61
+ + EN+N + ++I ++ ++ + SV LI PPY N + + R
Sbjct: 116 IRLEENRNLLNVNTNQIAIKDNAKNIKHYIKENSVSLILTSPPYANLLNRKRKNKSRRNR 175
Query: 62 HS----LVDAVTDSWDK--FSSFEAYDAFTRAWLLACRRVLKPNGTLWV-----IGSYHN 110
+ ++ + + + Y + + +LK G V
Sbjct: 176 KNEQFLQIEQYSQDPNDLGVMELDEYTETIKNIYGSLLPLLKSKGHCVVNVPDFWWDNKR 235
Query: 111 I---FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
I I L + + + N I+W ++N + + + + T+
Sbjct: 236 ITLHISIINALTEVGYELRNTIIWDRTNIVNGIGIFGWPSNYITM 280
>gi|53711930|ref|YP_097922.1| DNA methyltransferase [Bacteroides fragilis YCH46]
gi|52214795|dbj|BAD47388.1| DNA methyltransferase [Bacteroides fragilis YCH46]
Length = 339
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/357 (17%), Positives = 111/357 (31%), Gaps = 96/357 (26%)
Query: 9 INENQNSIFEWKDKI---IKGNSISVLEK---L--PAKSVDLIFADPPYNLQLNGQLYRP 60
+ E + I ++ K+ I+GNSI +L+ L V+LI PP+ L Q
Sbjct: 1 MEEQKKIIKIFESKLGSLIQGNSIELLKSKKYLNKLKGKVNLIVTSPPFPLNNKKQYGNE 60
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQ 119
+ Y + +L +G+L + IG+ R L
Sbjct: 61 KG----------------DEYLKWFTDLAPIFSDLLADDGSLVIEIGNAWEPERPVQSLL 104
Query: 120 NLNFWI------------LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK------- 160
+L + + + + +P+ N T+ +
Sbjct: 105 HLECLFGLVKHPTANLRLIQEFICYNPSKLPSPAQWVTVNRIRTVDSYTHVWWLAKNDYP 164
Query: 161 ---------------------------AKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
+ N + S + S E
Sbjct: 165 KADNTKVLRPYSKSMEQLLKKGKYNAGKRPSEHNISESGFLKDHGGSISHNFFEMESIDE 224
Query: 194 RLR-----------------------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + + HP + L++ + T D++LDP
Sbjct: 225 KRKVRLPHSVLSFSNTNSNDYFLKTCREKSITPHPARMNGGLINFFINFLTDEDDLVLDP 284
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
F GS T+G A+KL+R +I E+K+DYI+ A R + + N L ++ R +
Sbjct: 285 FSGSNTTGYCAEKLKRKWISFEIKEDYIEQAILRFSEQE--LNSSLKEVSNGRKHKK 339
>gi|110668023|ref|YP_657834.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
16790]
gi|109625770|emb|CAJ52205.1| site-specific DNA-methyltransferase [Haloquadratum walsbyi DSM
16790]
Length = 516
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/281 (21%), Positives = 89/281 (31%), Gaps = 52/281 (18%)
Query: 23 IIKGNSISVLEKLPAK------SVDLIFADPPY-NLQLNGQLYRPDH--------SLVDA 67
G+S + + L K VD I PPY +LQ G+ S + A
Sbjct: 9 FHIGDSRKLQQTLSKKGAPAEPYVDAIITSPPYADLQKYGETDDQIGEQEYEAFLSDIKA 68
Query: 68 VTDS-----------WDKFSSFEAY---------DAFTRAWLLACRRVLKPNGTLWVIGS 107
V W +F A L + + T +
Sbjct: 69 VFQQCYNISTADSTLWINTDTFRRDGRLVRLPFDIADDLENLPELKNCTTDSCTGQLQVD 128
Query: 108 YHNIFRIGTMLQNL------NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
N ++ + + I+W K P + + +N +E + S +
Sbjct: 129 RGNGVYQCDTCGRRVDPLEKSWRLADHIIWDKKRTRPWYAEGKLRNVYEHVSMYSKEAEF 188
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGS--ERLRNKDGEK---------LHPTQKPE 210
K + SG L + K HP+ P
Sbjct: 189 KYNVDSVRETDPEKFGRWWVDYPERYNPSGKVPNNLWSFPIPKQGQWGPKLAYHPSPFPP 248
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
L+SRI+ +T PGD ILDPF G GT+ AVAK L R IG
Sbjct: 249 GLISRIIKLATDPGDTILDPFAGVGTTLAVAKALNRKVIGF 289
>gi|317011656|gb|ADU85403.1| type III DNA modification enzyme (methyltransferase) [Helicobacter
pylori SouthAfrica7]
Length = 437
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 27/223 (12%)
Query: 11 ENQNSIFEWKDK------IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ + I + +K +IKG+++ L+ L ++ + +I+ DPPYN + N +Y D
Sbjct: 74 KKNDKILKPLNKSTSKHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNNEFIYSDD 133
Query: 62 HSLVDAV--------TDSWDKFSS------FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S + + D ++ + +F LL + +LK +G +++
Sbjct: 134 FSQSNEALLKQLDYSKEKLDYINNLFGSKCHSGWLSFMYPRLLLAKDLLKKDGVIFISID 193
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ ++ + RK+ N HE L+ + + + +
Sbjct: 194 DNEAAQLKLLCDEIFGERNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNKE---FVN 250
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
K +D + + + +P P
Sbjct: 251 LLGGEKNLENYKNPDNDPNGAWINDNPSKAGYAEIQYYPIANP 293
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 10/145 (6%)
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK------ 160
Y I D + + +P + + +
Sbjct: 281 GYAEIQYYPIANPYTG---KVDYPPKGRSWIPTQNTLQKHIDEGRICFKKKHKDNERGFI 337
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
K Y + + + + + + + E LR + E K +++I+ +
Sbjct: 338 YKRYLKDIKTTQKTFDSLAFSDNCYMNQAATKELLRLELAE-YFSYPKSVDFMAKIIEHA 396
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLR 245
T+ GD ILD F GSGT+ +
Sbjct: 397 TEKGDTILDFFAGSGTTAHAVLESN 421
>gi|127457|sp|P00473|MTH2_HAEPH RecName: Full=Modification methylase HhaII; Short=M.HhaII; AltName:
Full=Adenine-specific methyltransferase HhaII
gi|148898|gb|AAA24963.1| methyltransferase [Haemophilus haemolyticus]
Length = 228
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/254 (19%), Positives = 96/254 (37%), Gaps = 38/254 (14%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
S ++ L+ +N + I + + +P K+V + F DP Y L+ Y
Sbjct: 2 FSHQDYLSFVNKKNKMNG----------IDLFKLIPDKAVKIAFFDPQYRGVLDKMSYGN 51
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQ 119
+ + + + D + ++ RVL PNG L++ +H + + L+
Sbjct: 52 EGKGRGKERAALPQMT-----DEIIQQFINEFERVLLPNGYLFLWVDKFHLVEGVKPWLE 106
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
N + D++ + G R + E L+ PK T+ + +
Sbjct: 107 NTPSLSVVDMLTWDKQKIG--MGYRTRRRSEYLVVIQKEPKKAKITWTLHNIPDVWAEKL 164
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
K H KP + ++++++T+ GD+ILDP G +
Sbjct: 165 QS--------------------KPHTHSKPIEMQKQLILATTQEGDLILDPASGGYSVFE 204
Query: 240 VAKKLRRSFIGIEM 253
K+ R+FIG ++
Sbjct: 205 CCKQTNRNFIGCDL 218
>gi|37527336|ref|NP_930680.1| hypothetical protein plu3462 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786770|emb|CAE15836.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 157
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I +S+ ++ LP +DLI DPPY W AY
Sbjct: 11 TLINDDSLRFIKTLPDNCIDLIATDPPYF-----------RVKECGWDRQW---EDVTAY 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
A+ L RVLKPNG+L++ + +L F +LN I+W K + +
Sbjct: 57 LAWLDEVLTEFWRVLKPNGSLYIFCGSR-LASDTEILVRERFNVLNHIIWAKPSGPWRRQ 115
Query: 142 GRRFQNAHE 150
+ A+
Sbjct: 116 NKESLRAYF 124
>gi|108756876|ref|YP_629467.1| modification methylase [Myxococcus xanthus DK 1622]
gi|108460756|gb|ABF85941.1| modification methylase [Myxococcus xanthus DK 1622]
Length = 423
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G HPT K AL+ + T PG +LD F GSG++G A FIGIE + Y +
Sbjct: 345 GRNHHPTVKSLALMRWLCRLITPPGGTVLDLFAGSGSTGVAALAEGFDFIGIEREPAYAE 404
Query: 260 IATKRIAS 267
IA R+
Sbjct: 405 IAHARLCH 412
>gi|299067110|emb|CBJ38306.1| Putative Site-specific DNA-methyltransferase (adenine-specific)
[Ralstonia solanacearum CMR15]
Length = 294
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/288 (18%), Positives = 91/288 (31%), Gaps = 43/288 (14%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYD 82
I G+ + L LP V PP+ LY +S D D +F Y
Sbjct: 15 IHGDCVEALADLPDACVGYSIFSPPFAS-----LYTYSNSPRDMGNCRTDVEFFDHFDYL 69
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFR--------------IGTMLQNLNFWILND 128
+ RRV+KP + + + Q F +
Sbjct: 70 ------IAQLRRVMKPGRDVSFHCMDMPASKERDGYIGLKDFGGDLLRAFQRHGFIFHSK 123
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA--KGYTFNYDALKAANEDVQMRSDWLI 186
+ K R + H+++ + + Y A D+ +
Sbjct: 124 VTIWKDPVTAMQRTKALGLLHKSVRENAAMCRQGIPDYLITIRAPGECERVTHDAKDYPV 183
Query: 187 PICSG---------------SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ R + ++ H ++ R ++ T P DI+L PF
Sbjct: 184 DLWQKVASPVWMDINPSDTLQYRSAREHDDERHICPLQLEVIRRGVMLWTNPDDIVLSPF 243
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
G G+ G V+ +L R F+G+E+K+ Y D A + + +L
Sbjct: 244 MGIGSEGVVSLELGRRFVGVELKKSYYDQAAANLRLASAAVSQDLFSD 291
>gi|118576338|ref|YP_876081.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194859|gb|ABK77777.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 236
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 30/240 (12%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
I +++ + G +++L+++P SV F DP Y + ++ + + S
Sbjct: 26 KKIMNRRNR-MNG--LTLLDRMPDCSVQAAFFDPQY-RGILDRMKYGNEGVSRGRLRSGM 81
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ S + F L RVL P+GTL++ ++ + D++
Sbjct: 82 EQMSADTVREF----LGEMGRVLVPSGTLFLWIDKFHLVDGISGWIEGTCLNAVDMITWD 137
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
M R + H ++ SPK + + +
Sbjct: 138 KQRMGMGYRTRRCSEH--MVVLQKSPKRAKNVWRDHGIPDVWPEKV-------------- 181
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ H KP L +R++ T +LDP G + K+ R+FIG ++
Sbjct: 182 ------EGRNHTHAKPVRLQARLIECVTTGRGAVLDPAAGGYSVLESCKRTGRNFIGCDL 235
>gi|308062654|gb|ADO04542.1| adenine-specific DNA methylase [Helicobacter pylori Cuz20]
Length = 289
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
T KPEALL RI+ ST+ D++LD F GSGT+ AVA KL+R +IGIEM + + +
Sbjct: 111 FDTPKPEALLKRIIEISTQENDLVLDFFAGSGTTCAVAHKLKRKYIGIEMGEHFDSVILP 170
Query: 264 RIAS 267
R+
Sbjct: 171 RLKK 174
>gi|227875280|ref|ZP_03993422.1| possible DNA methylase [Mobiluncus mulieris ATCC 35243]
gi|227844185|gb|EEJ54352.1| possible DNA methylase [Mobiluncus mulieris ATCC 35243]
Length = 381
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 32/219 (14%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
+ + E + + + +I G + + L ++P V LI+ DPP+N
Sbjct: 56 PKNDKSRYTERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA 115
Query: 53 LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
Y + + R L+ +++L+ +G++WV +
Sbjct: 116 QTFANYEDN--------------LEHSVWLTMMRDRLVNLKKLLREDGSIWVHLDDVEVH 161
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP-----KAKGYTF 166
R+ +L V + N F ++ +T++ S + T
Sbjct: 162 RMRLLLDEIFGSENFISEVIWQKAYGGNNSSVEFVSSTDTVLVYSKKRNNLQLNSLPRTP 221
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
D+ + N D +R W G K G+ HP
Sbjct: 222 KMDSRYS-NPDNDIRGRWKGDNAFG--EGAGKPGKSQHP 257
>gi|124514975|gb|EAY56486.1| putative DNA methylase N-4/N-6 [Leptospirillum rubarum]
Length = 452
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 21 DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLN----GQLYRPDHSLVDAVTDSWD 73
++G+++ +L L + + I+ DPPYN + R A D+
Sbjct: 66 HLFLEGDNLHILRLLKKEYAGAIGAIYIDPPYNTGTTMRYFDRFSRRGGPSGLAGGDTGS 125
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ + +F L+ R +L+ +G L+V +I + +L + +
Sbjct: 126 RRDD-SPWLSFLYPRLILARELLREDGALFVSIDDRSIHHLRYLLDEIFGPDNHAGTVVW 184
Query: 134 SNPMPNFRGRRF 145
+ RG R
Sbjct: 185 RKKVVRGRGHRH 196
>gi|331006812|ref|ZP_08330073.1| Type III restriction-modification system methylation subunit [gamma
proteobacterium IMCC1989]
gi|330419380|gb|EGG93785.1| Type III restriction-modification system methylation subunit [gamma
proteobacterium IMCC1989]
Length = 298
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 160 KAKGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNKDGEK----------LHPTQK 208
+ N D+ + S S E N++ +K T K
Sbjct: 34 NKIWFGKNGDSRPRQKNYLSEASGVKSWSWWSNKEAGHNQEAKKEINVLFGADNAFDTPK 93
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
PE L+ R+L ++ GD+ILD F GS ++ AVA K+ R +IGIE+ + R+
Sbjct: 94 PERLMQRVLHIASNEGDLILDSFLGSASTVAVAHKMNRRYIGIELGEHAKTHCQPRLQK 152
>gi|289675321|ref|ZP_06496211.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. syringae FF5]
Length = 176
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 12/168 (7%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I+ G+ I ++ LP +SV PPY + V +
Sbjct: 8 LHQILVGDCIDMMRTLPDESVHTCVTSPPYYGLRDY-----------GVEGQIGLEETPA 56
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ A RRVL+ +GT+WV G + + + ++
Sbjct: 57 EFIARLVDVFREVRRVLRADGTIWVNMGDSYAGSWG-AHGRDDMGVGVSTISQRQVMASQ 115
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ + +A P + D + + + + +
Sbjct: 116 RKSKTTTHAEYKPKDLMGMPWRLAFALQDDGWYLRQDIIWHKPNPMPE 163
>gi|241589847|ref|YP_002979872.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
gi|240868559|gb|ACS66218.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12D]
Length = 412
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/317 (15%), Positives = 87/317 (27%), Gaps = 73/317 (23%)
Query: 2 SQKNSLAINENQNSIFEWKDKI---IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
S L N+ + + K+ + GN V L + + L+ PP+ L
Sbjct: 89 SAGKKLDEAGNEVQLIAFSTKLGIAVFGNCKQVFAGL-NEPIQLVVTSPPFLL------- 140
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN-------- 110
A ++ + + Y F + R L P ++ + S
Sbjct: 141 --------AKPRAYGNPPTMQDYIDFVCGAIEPVCRHLAPGASIVINLSNDCHVKGSPAR 192
Query: 111 ---IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN----AHETLIWASPSPKAKG 163
+ R+ L++ L D + KS+ P +
Sbjct: 193 STYLERLVLALEDRLGLHLMDRIVWKSSKAPGPTQWACLRPIQLKTAYEYCYWFTNDPSC 252
Query: 164 YTFNYDA-----------------------------------LKAANEDVQMRSDWLIPI 188
N E + +
Sbjct: 253 VRSNNRKILLPHTERHLKFMEEGGVKKAASYGDGSQVHRLGQFGTVTEGRLPSNVLEVGT 312
Query: 189 CSGS----ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
R + G LH P + + T+PGD+++DPF G+G + A++L
Sbjct: 313 SCADTRAYRRRAAELGLPLHGAMMPTRIPEFFIKFLTEPGDLVVDPFGGTGKTALAAERL 372
Query: 245 RRSFIGIEMKQDYIDIA 261
R + E YI A
Sbjct: 373 GRRWAMAEKMLQYIRGA 389
>gi|326576689|gb|EGE26596.1| modification methylase MboIB [Moraxella catarrhalis 101P30B1]
Length = 71
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+K N D Q + W +P E+ + K HPTQKP LLSRI++SST+ GD+ILDP
Sbjct: 1 MKKLNGDKQAKDVWRLPAVGSWEKTQGK-----HPTQKPLGLLSRIILSSTQKGDLILDP 55
Query: 231 FFGSGTSGAVAKKLRR 246
F GSGT+G A L R
Sbjct: 56 FSGSGTTGIAATILGR 71
>gi|320537594|ref|ZP_08037531.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
gi|320145548|gb|EFW37227.1| DNA (cytosine-5-)-methyltransferase [Treponema phagedenis F0421]
Length = 384
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 9/161 (5%)
Query: 16 IFEWKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVD-AVT 69
+ + +I+G++ S ++ L VD I+ DPP+ + S V
Sbjct: 27 WNKKNNLLIQGDNFSSMQILLQEYNLEGRVDFIYIDPPFATNSVFAIGDDRTSTVSPGGN 86
Query: 70 DSWDKFSSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWIL 126
D + F R L+ ++L NG++++ Y + ++
Sbjct: 87 DKIAYSDKLVGADFLEFLRERLIPAHKMLSKNGSIYLHIDYKIGHYVKIIMDEIFGIENF 146
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + R NF R + N + +++ S + +
Sbjct: 147 KNDITRIKCNPKNFSRRAYGNIKDLILFYSKTKNNIWHNPC 187
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+PT+K +LL ++ SS+ II D F GSGT+ A++L R +IGI+ ++ I I
Sbjct: 291 AYPTEKNLSLLKHLIESSSNEDSIIFDFFCGSGTTLVAAQELERKWIGIDKSEEAIKITK 350
Query: 263 KRIASVQP 270
++++ P
Sbjct: 351 QKLSQCSP 358
>gi|88811217|ref|ZP_01126473.1| putative restriction-modification system: methylase [Nitrococcus
mobilis Nb-231]
gi|88791756|gb|EAR22867.1| putative restriction-modification system: methylase [Nitrococcus
mobilis Nb-231]
Length = 342
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 12/189 (6%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G + VLE L +D I+ DPPYN Y D + D +
Sbjct: 140 HTVINGENFHVLEALTYTHRGKIDAIYIDPPYNTGARDWKYNND------YVEGEDLYR- 192
Query: 78 FEAYDAFTRAWLLACRRVLK-PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ AF L R +L+ + L V R+G +L+ + +V NP
Sbjct: 193 HSKWLAFMERRLKVARELLRQESSVLIVTIDEKEFLRLGLLLEQIFPEADIQMVSSVINP 252
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
R F E + + +D L A + W +G + LR
Sbjct: 253 KGTARSSEFARIDEYIF-FVKLGDISISRWRWDMLNARDYGEDQEVRWRGLARTGRKGLR 311
Query: 197 NKDGEKLHP 205
+ + +P
Sbjct: 312 SNNPGSWYP 320
>gi|313667098|gb|ADR72994.1| M1.BsrI [Geobacillus stearothermophilus]
Length = 416
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 38/97 (39%)
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
N KD K H P L R++ ++ GD+I
Sbjct: 94 QRQITFNGMTAREWALHSRNVWNDVSSPRKDYHKEHGAVFPLKLAERLIKMYSREGDLIF 153
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
DPF G GT+ A ++ R+ IGIE+ + ++ + +
Sbjct: 154 DPFSGIGTTIKAALEMNRNGIGIELNPKFYELTKQIL 190
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN------------LQLNGQLYRPDHSLVDAVT 69
K+ + ++ L A SV + PPY + N + ++S V +
Sbjct: 235 KLFNDDCRNLTNYLEADSVQALITSPPYADFIRKSIEDREKVHKNSLIKFNNNSTVKPYS 294
Query: 70 D-SWDKFS-SFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNL 121
+ D + ++ + + +V+KP G +WV+ Y + + L
Sbjct: 295 NSDLDLGNLPYDEFLEALFPIMEDTYKVIKPGGYAIWVVKDYKDKENFSSYLDFH 349
>gi|330465121|ref|YP_004402864.1| hypothetical protein VAB18032_05690 [Verrucosispora maris
AB-18-032]
gi|328808092|gb|AEB42264.1| hypothetical protein VAB18032_05690 [Verrucosispora maris
AB-18-032]
Length = 125
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
RS +R G+ HP +KP LLS ++ +S+ PGDI+LD F GSG++G
Sbjct: 14 RSGMEFTDVWDFMSVRPFKGK--HPAEKPLDLLSHMISASSYPGDIVLDCFAGSGSTGVA 71
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
A + R + +E+++ + A K +A+ + ++ T + P V
Sbjct: 72 ALRAGRRAVCMEIEEQWCSRAGKELAAAEKGVDLTTTREHHMKKSPVVF 120
>gi|317013706|gb|ADU81142.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
pylori Gambia94/24]
Length = 390
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + L+ + VLK +G +++ + + + ++ N F + N + +
Sbjct: 45 DYEKWIEEHLILAKSVLKQSGCIFISIDDNKMAEVK-IIANEIFGMRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP L+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVGLIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ R
Sbjct: 320 QAVMEVNRDHY 330
>gi|261347021|ref|ZP_05974665.1| type III restriction/modification enzyme, methylase subunit
[Providencia rustigianii DSM 4541]
gi|282564874|gb|EFB70409.1| type III restriction/modification enzyme, methylase subunit
[Providencia rustigianii DSM 4541]
Length = 648
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 25/208 (12%)
Query: 1 MSQKNSLAINENQNSIFEW---KDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLN 54
++ + +N+I + ++ IIKGN++ L L ++ V LI+ DPPYN +
Sbjct: 151 LTNAKRYTKDNIENNITNFHDNENLIIKGNNLIALHSLRKTLSRKVKLIYIDPPYNTGND 210
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
Y D+F + + F + L A + +L GT+ + + +
Sbjct: 211 AFKYN-------------DRF-NRTTWLTFMKNRLEAAKDLLSEKGTICIQINDIEFSYL 256
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ + + ++ M + G + ++ T+ +
Sbjct: 257 KVL--CDSIFGEDNFQSSICIQMAHLSGVKMSHSSTTIP---KIKEHILIYNKDSKNIKI 311
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEK 202
N S + +N +
Sbjct: 312 NPQYIPVSWDFAFNRYNNFIKKNNSNNE 339
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 169 DALKAANEDVQMRSDWLIPICS-GSERLRNKDGEKL--HPTQKPEALLSRILVSSTKPGD 225
D ++ N Q S G + + GE + +KPE LL RI+ + D
Sbjct: 413 DKIRVINGKKQPSSIISDIWTDIGINNVFQEGGEDISLRFGKKPEMLLQRIISLFSDEND 472
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
I+LD GSGT+ AVA K++R++IGIE +A +R+ +V N ++
Sbjct: 473 IVLDFHLGSGTTSAVAHKMKRNYIGIEQMDYAETLAIRRLCNVVNGDNSGIS 524
>gi|207109898|ref|ZP_03244060.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori HPKX_438_CA4C1]
Length = 53
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
+ E + II+G+ + L+ P +SVD IFADPPY +Q G+L R + +
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNRSVDFIFADPPYFMQTEGELKRFEGTKF 53
>gi|159904415|ref|YP_001548077.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
maripaludis C6]
gi|159885908|gb|ABX00845.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C6]
Length = 327
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 18/187 (9%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I + ++ LP SVDLI ADPPY + +D +F+
Sbjct: 3 LNEIYNQDFFEGVKNLPDNSVDLIIADPPYY----------------NIKGDFDFRLTFD 46
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM-P 138
+ +RVLK NG++ + G NI + +L F N + +
Sbjct: 47 EWKDMHEKMAKEFKRVLKLNGSILLYGHAKNIAYQQVIFDDLFFLENNLVWHKTDCQTRK 106
Query: 139 NFRG-RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
N +G R F E +++ S + + N + E+ + ++ + +L N
Sbjct: 107 NIKGYRCFAPVTERILFYSNEYRKNNNSLNNPMYREYVENFKPIIEYFMEEKEKIMKLHN 166
Query: 198 KDGEKLH 204
+
Sbjct: 167 LNTNGDF 173
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ HPTQKP L ++ ++TKP ++L PF GSG K L R+FIG E+ ++Y +I
Sbjct: 260 KYNHPTQKPPKLSKMLIEATTKPESLVLVPFVGSGVECLSCKDLERNFIGFEIDENYFEI 319
Query: 261 ATKRIAS 267
A KRI
Sbjct: 320 AKKRINE 326
>gi|154249196|ref|YP_001410021.1| DNA methylase N-4/N-6 domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154153132|gb|ABS60364.1| DNA methylase N-4/N-6 domain protein [Fervidobacterium nodosum
Rt17-B1]
Length = 846
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/338 (14%), Positives = 94/338 (27%), Gaps = 67/338 (19%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYN-------------------------LQLN 54
+IK + L + + V I+ DPP+N +L
Sbjct: 393 LIKSENYQALNTILPKFKEKVQTIYIDPPFNKEQEADYLYKVGYKDATWITMLENRTRLG 452
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA----------------------- 91
L S+ + + + D F +
Sbjct: 453 RDLMDEKGSIFVRCDYNGNAYLKMLLNDIFGKDNFRNEINVSRISKQDPKVKRFNTAADS 512
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
K + + + + ++ ++ + +GR + E
Sbjct: 513 LYLFSKSDNFKFNLILKKLSKKKEERWHAMDSQGQGQAIYIFGHLFEPPKGRHWTYGQEK 572
Query: 152 LIWAS-------PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG---- 200
+ K N N + E+ + +
Sbjct: 573 IKQMEQEGRIRLKCRKCGYVHTNGIWRGCPNCGTVEDVKVEYLLPPTEEKQIDSNWTDIS 632
Query: 201 ----EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
T+ E LL R++ S++ GD+++D F GSGT+ AVA KLRR +IG+EM +
Sbjct: 633 GYTSNWEFQTENSEILLKRVIESTSNEGDLVMDFFLGSGTTIAVAHKLRRKWIGVEMGEH 692
Query: 257 YIDIATKRIASVQPLGNIEL-TVLTGKRTEPRVAFNLL 293
+ + R+ V + K
Sbjct: 693 FYTVVLPRMKKVLAYDKSGISKEKDVKEKYNEDNAGGF 730
>gi|125973034|ref|YP_001036944.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
gi|125713259|gb|ABN51751.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
Length = 371
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 68/233 (29%), Gaps = 47/233 (20%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
+ S+DL DPP WD+ S
Sbjct: 180 IEDGSIDLCICDPP-----------------------WDRTS-----IPICEGISRVAAD 211
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
L+ G+L V+ ++ I L W + P+P L
Sbjct: 212 KLRDGGSLLVLTGGSHLPDIINALSANK---RLRYHWLLTCPLPQGSPASVSR----LKI 264
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
S Y ++ + + + H PE L+S
Sbjct: 265 QSKVRFVLWYVKGTYDGDIVSDYINRPNSSSATD------------KTYHEWGAPEELIS 312
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
++ + PGD + D G GT+ A L R FIG ++ ++ + +R+
Sbjct: 313 ELIERFSNPGDTVADWTVGGGTTAVCAVLLGRKFIGSDVDENAVKTTLRRVRQ 365
>gi|206895915|ref|YP_002246966.1| modification methylase, type III R/M system [Coprothermobacter
proteolyticus DSM 5265]
gi|206738532|gb|ACI17610.1| modification methylase, type III R/M system [Coprothermobacter
proteolyticus DSM 5265]
Length = 1129
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 107/362 (29%), Gaps = 68/362 (18%)
Query: 7 LAINENQNSIFEWKD-KIIKGNSISVLEKLP---AKSVDLIFADPP----------YNLQ 52
LA + + D ++K + L L V I+ DPP YN++
Sbjct: 561 LAEISKSVGLDDALDGLLVKSENFQALNTLLGKYKAKVQTIYIDPPFNKEQDADFLYNVK 620
Query: 53 LNGQLY-----------------RPDHSLVDAVTDSW------------DKFSSFEAYDA 83
+ R + +W + F +
Sbjct: 621 YKDSTWASMLENRLRLGREMLSERGSIFVRCDYNGNWIVRPLMNEIFGAENFRNEIVISR 680
Query: 84 FTRAWLLACRRVLKPNGTLWV---IGSYHNIFRIGTMLQNLNFWILND--------IVWR 132
++ R + + IGS N+ W D ++
Sbjct: 681 ISKQDPKVKRFNTATDSLFFYSKTIGSPFNLLFKKLAKNKEERWHAMDSQGKGQPLYIFG 740
Query: 133 KSNPMPNFRGRRFQNAHETLIWASP----SPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
PN R + + K GY K E + +
Sbjct: 741 YLLSPPNNRHWTYGQEKIKQMEREKTIRLKCKKCGYIHTSGIWKGCPECKNREDVKVEYL 800
Query: 189 CSGSE---------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ +E + T+ E LL R++ S++ GD+++D F GSGT+ A
Sbjct: 801 LAPTEVKQIDSNWTDVPGYSFVTDFATENSEILLKRVIESTSNRGDLVMDFFLGSGTTTA 860
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL-TVLTGKRTEPRVAFNLLVERGL 298
VA KL R +IG+EM + + + R+ V + K T + +
Sbjct: 861 VAHKLGRKWIGVEMGEHFWTVVLPRMKKVLAYDKSGISKEQDVKETYNEKTAGGFFKYQI 920
Query: 299 IQ 300
++
Sbjct: 921 LE 922
>gi|332884368|gb|EGK04635.1| hypothetical protein HMPREF9456_03411 [Dysgonomonas mossii DSM
22836]
Length = 265
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 32/183 (17%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++K KG+ I +++ LP +SVD+I DPPY LY + D+
Sbjct: 5 RNKSYKGDCIELMKYLPDESVDVICTDPPY-------LYLKNQ--------KLDRHFDET 49
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y +RVLK +G + + G + +R T+L +L F +I+W KS
Sbjct: 50 EY-------FNQVKRVLKKDGFIILFGRGTSFYRWNTILADLGFAFKEEIIWDKSYCSSP 102
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
HET+ + ++M+ + IC +RLR+
Sbjct: 103 LMA--MSRVHETVSIHTKGNGTINKVKVPY--------LEMKGHDIPSICQDIKRLRSVL 152
Query: 200 GEK 202
Sbjct: 153 NNT 155
>gi|296100150|ref|YP_003620434.1| type III restriction-modification system methylation subunit
[Leuconostoc kimchii IMSNU 11154]
gi|295831580|gb|ADG39465.1| type III restriction-modification system methylation subunit
[Leuconostoc kimchii IMSNU 11154]
Length = 645
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
E + KPE L+ RIL ST D++LD F GS T+ AVA K+ R FIG+E +
Sbjct: 450 ENVFTNPKPEQLIKRILEISTNENDLVLDFFMGSATTQAVAMKMNRRFIGVEQMDYIKTV 509
Query: 261 ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ-ILTNAQGNISATVCAD 319
+ +R+ V ++ + V L++ Q L + Q + D
Sbjct: 510 SVERLKKVIDGEQGGIS-----KDVNWQGGGSFVYAELMEKNQGYLKDVQQAETTKQLED 564
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
F + IIKGN++ L L +V IF DPPY + +P +
Sbjct: 174 STDSFNDDNLIIKGNNLIALHSLKNRYAGTVKSIFIDPPYF----FETTKPADTYTYNSN 229
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ F + + +L NGTL++ S I ++
Sbjct: 230 FK------LSGWLTFVQNRIKIAHELLAENGTLFLTMSDEGAHYIKILM 272
>gi|309379437|emb|CBX22004.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 537
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/199 (14%), Positives = 60/199 (30%), Gaps = 32/199 (16%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTDS- 71
I+ ++ L+ L SV +I+ DPPYN + +Y R +++ TD
Sbjct: 2 FIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFIYPDKFSESREEYARRVGDTDDA 61
Query: 72 ------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
W D + + L + +L+ +G +++ + ++
Sbjct: 62 GYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQAQL 121
Query: 115 GTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD---A 170
+ + + + R F E ++ S + +
Sbjct: 122 KLLCDEVFGAENFVSNIIWEKRYTRSNNARMFTTLTEQIVCYRKSDNLQELKEPRNEKAD 181
Query: 171 LKAANEDVQMRSDWLIPIC 189
N D R W C
Sbjct: 182 STYTNPDNDPRGVWTSVSC 200
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 27/133 (20%)
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAAN---------------EDVQMRSDWLIPICSG- 191
H T W K Y + N + + D +G
Sbjct: 226 KHPTNAWKFEHSKYLSYQEDNRLYWGKNGENKYPRLKKFLTEMDGGMVPVDLWKHDETGT 285
Query: 192 ----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLR- 245
S+ L + G+ + KP +L+ R+L ++ D IILD F GSGT+ +L
Sbjct: 286 TDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFSGSGTTAHAVMQLNA 345
Query: 246 -----RSFIGIEM 253
R FI +++
Sbjct: 346 EDGGSRRFICVQL 358
>gi|294787934|ref|ZP_06753178.1| type III restriction-modification system, methylase subunit
[Simonsiella muelleri ATCC 29453]
gi|294484227|gb|EFG31910.1| type III restriction-modification system, methylase subunit
[Simonsiella muelleri ATCC 29453]
Length = 580
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 30/170 (17%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------------RPDHSL 64
+ I+ ++ L+ L V +I+ DPPYN + +Y R +
Sbjct: 50 NIFIEAENMEALKILQKSYAGKVKMIYIDPPYNTGSDSFIYPDKFSETRKEYAQRVGDTD 109
Query: 65 VDAV------------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
D +S + + + L + +L+ +G +++ +
Sbjct: 110 TDGYLKRDGVFQGAFRKNSKENGHYHSNWLSMMLPRLHLAKTLLRDDGVIFISIDDNEQA 169
Query: 113 RIGTMLQNLNFWILND--IVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
++ + F N V + P R F +H+ L+ + +
Sbjct: 170 QLKLLCDEEVFGAENFVGEVIWERAYSPVNLKRHFSESHDYLLCYAKNKD 219
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIE 252
D + KP + R+L + II+D F GSGT+ + R +I ++
Sbjct: 346 DNKAFFDYPKPTNFVQRMLELYSNSDSIIMDFFSGSGTTAHAVMQLNAEDGGNRRYICVQ 405
Query: 253 M 253
+
Sbjct: 406 L 406
>gi|315173014|gb|EFU17031.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX1346]
Length = 220
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 21/221 (9%)
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
G++ + + D+ + F L + + + V ++ +
Sbjct: 16 GGKIENGESDKANKSFFDTDENFRISEFMHFCSKMLKKEPKEVGKAPAMIVFCAFQQLQM 75
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY--TFNYDAL 171
+ + F +V+ K + + A Y + L
Sbjct: 76 VIDYGKKYGFNNHIPLVFIKKSSPQVLKANM------------KVVGATEYALVLYREKL 123
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
N D +M +W E + K+HPTQKP ++ R++ T GD+++DP
Sbjct: 124 PKFNNDGRMVLNWF-------EWETDNSYPKIHPTQKPIPVIKRLIEIFTDYGDVVIDPC 176
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
GSG++ A +L R+ G E+K++ + + +++ S P+G
Sbjct: 177 AGSGSTLRAAAELNRNAYGFEIKKEMYEASQEKMLSNIPMG 217
>gi|295092254|emb|CBK78361.1| Adenine specific DNA methylase Mod [Clostridium cf. saccharolyticum
K10]
Length = 673
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 19/149 (12%)
Query: 21 DKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L V I+ DPPYN D +
Sbjct: 174 NIVIKGNNLLSLATLMRNYEGMVKCIYIDPPYNTGKKNSFGYNDSF-------------N 220
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ +F + L +R+L +G + + + + + + +
Sbjct: 221 HSTWLSFMKTRLEYAKRLLTRDGCILIQTDDKEQAYLKVLCDEIFGAEQYETTFFVQVRF 280
Query: 138 PNFRGRRFQNAH---ETLIWASPSPKAKG 163
N H ET+ S + A
Sbjct: 281 TNKTLAEDSTLHKVMETVHVYSKNHGAFR 309
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
RN+ G + +KPE LL L + GD+ILD F GSGT+ AVA K+ R +I E
Sbjct: 468 RNEGGVDIEGGKKPEQLLKFFLDYFSNEGDLILDFFGGSGTTAAVAHKMNRRYITCEQMD 527
Query: 256 DYIDIATKRIASVQPLGNIELTVL 279
+ I++ R++SV ++
Sbjct: 528 NQIEMIKSRLSSVVAGEKTGISSD 551
>gi|270692628|ref|ZP_06222937.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
gi|270316038|gb|EFA28070.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
Length = 181
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + +I E+ K+ KLHPTQKP A+L R++ T GD+++DP GS +
Sbjct: 90 DEFNNNGKMIKNWFEWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSAS 149
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ A++L R G E+K+D IA +++
Sbjct: 150 TLRAARELNRPSYGFEIKKDSCKIAKEQM 178
>gi|57242065|ref|ZP_00370005.1| type III restriction/modification enzyme, methylase subunit
[Campylobacter upsaliensis RM3195]
gi|57017257|gb|EAL54038.1| type III restriction/modification enzyme, methylase subunit
[Campylobacter upsaliensis RM3195]
Length = 455
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 37/228 (16%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-- 75
+ IIKG+++ L+ L + +I+ DPPYN + + +Y +
Sbjct: 95 NIIIKGDNLHALKLLKSAYDGKIKMIYIDPPYNTKNDKFIYNDNFIKEYQKLLVELDLLK 154
Query: 76 -----------------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH--- 109
+ + +F L R +LK +G +++ +
Sbjct: 155 LDSNGKVLEKSEVLHFLTNPSGDKAHSGWLSFMLPRLKLARDLLKDDGVIFISIDDNEQA 214
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPN----FRGRRFQNAHETLIWASPSPKAKGYT 165
N+ + + + ++ N V + +G+ +NA L +A + K
Sbjct: 215 NLKILCDEIFGEDNFMANLCVELSTTQGMKVASAQKGQIVKNAEYILCYAKDNQNFKFER 274
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
Y A + + + E L++K + QK E L
Sbjct: 275 PLYTAKEWDDHYSVYIDPESKNRTTLLEFLKDKYPDIT--KQKIEELY 320
>gi|118593983|ref|ZP_01551335.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
gi|118433433|gb|EAV40108.1| DNA methylase N-4/N-6 [Stappia aggregata IAM 12614]
Length = 264
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R + G HP + P AL + T PGD++LDPF GS +G V+++L R++I E+
Sbjct: 116 RYCKEKGITAHPARFPAALPEYFIRMVTDPGDVVLDPFGGSCITGEVSERLERNWICAEL 175
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ---PGQILTNAQG 310
++ Y++ A R ++P+ + G + PG +
Sbjct: 176 REGYLEGARGRFE--------------NPISQPKPKPGKKEDEGFYRISHPGLLWNGHDE 221
Query: 311 NISATVCADG 320
+A + +DG
Sbjct: 222 RATAPLPSDG 231
>gi|315651945|ref|ZP_07904947.1| type III restriction-modification system EcoP15I [Eubacterium
saburreum DSM 3986]
gi|315485774|gb|EFU76154.1| type III restriction-modification system EcoP15I [Eubacterium
saburreum DSM 3986]
Length = 219
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSL 64
E + ++ I+G+++ VL+ L V +I+ DPPYN + + +
Sbjct: 88 EESVNWDTTENLYIEGDNLEVLKLLQESYLGKVKMIYIDPPYNTGNDFIYNDDFTINGEQ 147
Query: 65 VDAVTDSWDKFSS------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ +D + + + + LL R +L +G +++ +
Sbjct: 148 YAEESGEYDDNGNRMFKNTDSNGRFHSDWCSMIYSRLLVARNLLSDDGVIFISIDDNEQE 207
Query: 113 RIGTMLQNL 121
+ +
Sbjct: 208 NLKKFVMKY 216
>gi|309378869|emb|CBX22574.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 452
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 10/200 (5%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F + L G + N + V +
Sbjct: 127 DKFEQERGKYYIDNLDRGGLQY--SDSLNFAIQCPDGTFTYPNGRTEFVNDGWIWKWSKN 184
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--------DWLIPICSGSE 193
+ + L + K G++ Y + + + I ++
Sbjct: 185 KIDWAITNGFLEFRKSKSKKSGWSVCYKNYMLVDNENKPIERSAPYKNLIQDILNTHATD 244
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
L+ G K+ T KPE+LL ++ +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 245 ELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIEQ 304
Query: 254 KQDYIDIATKRIASVQPLGN 273
+A +R+ V
Sbjct: 305 MDYIETLAVERLKKVIDCEQ 324
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
LI+ DPPYN +G Y DKF + + F + L + +L +G
Sbjct: 2 KLIYIDPPYNTGNDGFKYN-------------DKF-NRSTWLTFMKNRLEIAKELLMEDG 47
Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++V + + ++ + + ++ E ++ S + K
Sbjct: 48 SIFVSIDDNEQAYLKILMDEVFGNENFICNFIWEKKTGASDAKQIATITEFVLCYSKNFK 107
Query: 161 AKGYTFNYDALKA 173
N +
Sbjct: 108 TVKLNKNTSSYDT 120
>gi|317179345|dbj|BAJ57133.1| Type II DNA modification enzyme [Helicobacter pylori F30]
Length = 390
Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F + N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANKIFGMRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 320 QAVIEVNKDYY 330
>gi|308182435|ref|YP_003926562.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
pylori PeCan4]
gi|308064620|gb|ADO06512.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
pylori PeCan4]
Length = 390
Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHT 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + I ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEIK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYILSYAKN 122
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 320 QAVIEVNKDYY 330
>gi|312173964|emb|CBX82218.1| K07319 putative adenine-specific DNA-methyltransferase [Erwinia
amylovora ATCC BAA-2158]
Length = 210
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
++ +S+ ++ LP S+DLI DPPY +WD ++ + Y
Sbjct: 12 LVNADSLVYIKTLPDNSIDLIATDPPY---------------YRVKDCAWDRQWDTVTDY 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS 107
A+ +L RVLKPNG+L++
Sbjct: 57 LAWLDEFLAEFWRVLKPNGSLYLFCG 82
>gi|293603856|ref|ZP_06686271.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292817693|gb|EFF76759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 554
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 21/118 (17%)
Query: 20 KDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDA--------- 67
+D +I+G+++ VL+ L L++ DPPYN D V
Sbjct: 92 RDVLIEGDNLQVLKLLQNGYAGQAKLVYIDPPYNTG--DTFTYNDDFSVSETEYLKATGQ 149
Query: 68 -------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V K + L+A R +L+ +G + + + +L
Sbjct: 150 VDEQGATVAKKEVKGRKHAPWLTMMFPRLVAARSLLRRDGVFLASIDNNEVHHLRLLL 207
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 11/175 (6%)
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFR--IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
L L Y+ I + T + + ++++ P G R++
Sbjct: 289 LREWFERLPEGNPAKQHSHYNFIDAGGVWTSDNSSSPNYRENLIYDFKGYAPPENGWRYE 348
Query: 147 NA-HETLIWASP--SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
A E L P + E S + S L G +
Sbjct: 349 PATMEELDRKGKLIYPTGRATRIRIKKYLHEQEMWAPASTFYRDRSGASSALETLMGAGV 408
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIE 252
K +L+R++ + T GD+++D F GSG++G + R +I ++
Sbjct: 409 FDDPKATDVLARLIAALTADGDLVVDFFAGSGSTGQAVWEQNARDGKTRHWILVQ 463
>gi|304387298|ref|ZP_07369491.1| type III restriction/modification enzyme [Neisseria meningitidis
ATCC 13091]
gi|304338681|gb|EFM04798.1| type III restriction/modification enzyme [Neisseria meningitidis
ATCC 13091]
Length = 457
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 10/194 (5%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F + L G + N + V +
Sbjct: 127 DKFEQERGKYYIDNLDRGGLQY--SDSLNFAIQCPDGTFTYPNGRTEFVNDGWIWKWSKN 184
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--------DWLIPICSGSE 193
+ + L + K G++ Y + + + I ++
Sbjct: 185 KIDWAITNGFLEFRKSKSKKSGWSVCYKNYMLVDNENKPIERSAPYKNLIQDILNTHATD 244
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
L+ G K+ T KPE+LL ++ +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 245 ELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIEQ 304
Query: 254 KQDYIDIATKRIAS 267
+A +R+
Sbjct: 305 MDYIETLAVERLKK 318
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
LI+ DPPYN +G Y DKF + + F + L + +L +G
Sbjct: 2 KLIYIDPPYNTGNDGFKYN-------------DKF-NHSTWLTFMKNRLEIAKELLMEDG 47
Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++V + + ++ + + ++ E ++ S + K
Sbjct: 48 SIFVSIDDNEQAYLKILMDEVFGNENFICNFIWEKKTGASDAKQIATITEFVLCYSKNFK 107
Query: 161 AKGYTFNYDALKA 173
N +
Sbjct: 108 TVKLNKNTSSYDT 120
>gi|299143877|ref|ZP_07036957.1| type III restriction/modification enzyme, methylase subunit
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518362|gb|EFI42101.1| type III restriction/modification enzyme, methylase subunit
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 660
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 20/166 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E + E + IIKGN++ L L V I+ DPPY +N D
Sbjct: 164 EENITFDEKDNLIIKGNNLIALSSLLKRYEGKVKCIYIDPPYYFSVNK----------DE 213
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
T +++ ++ F + L +R+L +G L+V S + + +L+++ +
Sbjct: 214 DTFAYNSNFKLSSWLVFMKNRLEMAKRLLSDDGALFVQISDDGVGELHCLLKDIF--GIE 271
Query: 128 DIVWRKSNPMPNFRGRRFQN-----AHETLIWASPSPKAKGYTFNY 168
+ + + + + G N E ++ + + + Y Y
Sbjct: 272 NFINKITVKTKSPSGFASVNPGVFETAEYILAFAKNKRNWKYNIQY 317
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 176 EDVQMRSDWLIPICSGS--ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ + S + I + + E + N+ G L +KPE L+ RI+ ++ GD+ILD G
Sbjct: 443 DGKIVPSMQVSNIWTDTSYEGIANEGGVTLKGGKKPEKLIRRIIEMASDKGDLILDYHLG 502
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
SGT+ AVA K+ R +IGIE + D +T R+ SV + ++
Sbjct: 503 SGTTCAVAHKIGRKYIGIEQLKYGKDDSTVRLESVIKGDSTGIS 546
>gi|313143166|ref|ZP_07805359.1| DNA methyltransferase [Helicobacter cinaedi CCUG 18818]
gi|313128197|gb|EFR45814.1| DNA methyltransferase [Helicobacter cinaedi CCUG 18818]
Length = 196
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P R QN E + K + ++ ++ + I
Sbjct: 54 SYPYPRNFYAQNTSEFITIYVKDGKPQNTPQELKEQSKLSQKEWVQ--FTKQIWDIPIPN 111
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ H PE + R++ + GDI+LDPF GSGT+ VAK+L R+FIG E+
Sbjct: 112 KADSAFGKHAAIMPEIIPYRLIKLYSFIGDIVLDPFAGSGTTLKVAKELGRNFIGYEIYP 171
Query: 256 DYIDIATKRI 265
Y + +++
Sbjct: 172 HYKSVIEEKL 181
>gi|239931605|ref|ZP_04688558.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
Length = 468
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
Q ++ R ++ +T PGD++LDP GSGT+ VA++ R +I I+ + I +A R+
Sbjct: 3 QTNTKVIERCMLMATDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVAIALARHRLM 62
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLL 293
+ + GK E ++ L
Sbjct: 63 GAKYPAYLLADSPEGKAKEAEISQQPL 89
>gi|317013169|gb|ADU83777.1| type III restriction-modification system: methyltransferase
[Helicobacter pylori Lithuania75]
Length = 646
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 166 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
++ F + L A R L +G ++V + + ++
Sbjct: 212 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLM 252
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLH-PTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
++R DW + + G+ L +KPE L+ IL ST+ D++LD F GSGT
Sbjct: 435 RKIRGDWWAGYYKDMGNVNKQGGDILFKNGKKPERLIKDILEISTQENDLVLDFFAGSGT 494
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
+ AVA K++R +IGIE I +R+ V ++ G +
Sbjct: 495 TCAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCGFK 541
>gi|307638054|gb|ADN80504.1| type III restriction-modification system methylation subunit
[Helicobacter pylori 908]
gi|325996659|gb|ADZ52064.1| Type III restriction-modification system methylation subunit
[Helicobacter pylori 2018]
gi|325998249|gb|ADZ50457.1| Type III restriction-modification system methylation subunit
[Helicobacter pylori 2017]
Length = 652
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+N+HE + T + + A N SD I + + + G L
Sbjct: 411 KNSHENIKIIRTDFNRNTDTARIELVSAKNNQSVFLSDIWKKIVTTG-GVAQEGGVILKN 469
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+KPE LL IL S+T D++LD F GSGT+ AVA K++R +IGIE I +R+
Sbjct: 470 GKKPEHLLEIILRSATNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERL 529
Query: 266 ASVQPLGNIELTVLTGKR 283
V ++ +
Sbjct: 530 KKVIEGEQGGISKKCDFK 547
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 19/155 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K I+ DPPYN + Y + +
Sbjct: 170 NYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNYNDN--------------FN 215
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L A R L +G ++V + + ++ + + V M
Sbjct: 216 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIF--GRENFVNCIVCEM 273
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
N G + Q+A + + Y N + +
Sbjct: 274 SNESGNKIQHAIQGKKFPKVKEYILVYAKNKENIC 308
>gi|316984192|gb|EFV63170.1| DNA methylase family protein [Neisseria meningitidis H44/76]
Length = 457
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 10/194 (5%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D F + L G + N + V +
Sbjct: 127 DKFEQERGKYYIDNLDRGGLQY--SDSLNFAIQCPDGTFTYPNGRTEFVNDGWIWKWSKN 184
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--------DWLIPICSGSE 193
+ + L + K G++ Y + + + I ++
Sbjct: 185 KIDWAITNGFLEFRKSKSKKSGWSVCYKNYMLVDNENKPIERSAPYKNLIQDILNTHATD 244
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
L+ G K+ T KPE+LL ++ +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 245 ELKKLFGSKVFTTPKPESLLQYLIQIATSESDIVLDYHLGSGTTAAVAHKMNRQYIGIEQ 304
Query: 254 KQDYIDIATKRIAS 267
+A +R+
Sbjct: 305 MDYIETLAVERLKK 318
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
LI+ DPPYN +G Y DKF + + F + L + +L +G
Sbjct: 2 KLIYIDPPYNTGNDGFKYN-------------DKF-NHSTWLTFMKNRLEIAKELLMKDG 47
Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+++V + + ++ + + ++ E ++ S + K
Sbjct: 48 SIFVSIDDNEQAYLKILMDEVFGNENFICNFIWEKKTGASDAKQIATITEFVLCYSKNFK 107
Query: 161 AKGYTFNYDALKA 173
N +
Sbjct: 108 TVKLNKNTFSYDT 120
>gi|313895500|ref|ZP_07829056.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975626|gb|EFR41085.1| DNA (cytosine-5-)-methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
Length = 646
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+ ++ + +LE L + VD I+ DPPYN Y D D D +
Sbjct: 70 HTLIEADNYHALQLLEYLYPQKVDCIYIDPPYNTGAKDWKYNND------YVDGSDAYR- 122
Query: 78 FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + + L +++L P + L V+ +G +L+ L +V N
Sbjct: 123 HSKWLSMMQKRLELAKKLLNPVDSVLIVMIDEKEYLHLGCLLEELFPETEMQMVSSAING 182
Query: 137 MPNFRGRRFQ--NAHETLIWASPS 158
RG F N + ++
Sbjct: 183 KGVSRGNEFARVNEYAFIVRIGKC 206
>gi|225849113|ref|YP_002729277.1| modification methylase, type III R/M system [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643411|gb|ACN98461.1| modification methylase, type III R/M system [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 581
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 109/361 (30%), Gaps = 79/361 (21%)
Query: 1 MSQKNSLAINENQNSIFEWKD----KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL 53
++ + E + + +D +IK + L + V I+ DPP+N +
Sbjct: 40 FDEEFKFRLLEKISESVDLEDALDGLLIKSENWQGLNTILNKYGNRVQTIYIDPPFNKEQ 99
Query: 54 N----GQLYRPDHSLVDAVTDS-----------------------------------WDK 74
+ + D + + + + W+
Sbjct: 100 DADYLYNVKYKDATWISMLENRLSLARELLNEKGSIFVRCDYNGNMYVRMLLNEIFGWEN 159
Query: 75 FSSFEAY----------DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
F + D F A V N +V Y + +
Sbjct: 160 FRNEIIVNRIVKKGFGADRFPTAIDSLFYFVKSEN---FVFKGYRKLLDKPKEPWWHDMT 216
Query: 125 ILN------DIVWRKSNPMPNFRGRRFQNAHETLIWASPS---------PKAKGYTFNYD 169
+ + + GR + + E + Y +
Sbjct: 217 SMTAGRKGGEPRIIFGKKLYPPPGRAWTFSQERIEEMEKEGRIRIRCSVCGYTHYKGIWK 276
Query: 170 ALKAANEDVQMRS-----DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
E+ + D PI + + T+ E LL R++ S++ G
Sbjct: 277 KCPKCGEEKERVDYLVITDGREPIDNDWTDIPGYSFGWDFQTENSEILLKRVIESTSNEG 336
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
D+ILD F GSGT+ AVA KL+R +IG+EM + + + R+ V ++ +
Sbjct: 337 DLILDFFLGSGTTIAVAHKLKRKWIGVEMGEHFWTVVLPRMKKVLAYDKSGISKEEDVKE 396
Query: 285 E 285
+
Sbjct: 397 K 397
>gi|109948189|ref|YP_665417.1| type III restriction-modification system: methyltransferase
[Helicobacter acinonychis str. Sheeba]
gi|109715410|emb|CAK00418.1| type III restriction-modification system: methyltransferase
[Helicobacter acinonychis str. Sheeba]
Length = 642
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 3/214 (1%)
Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+V + +NI+R N NF + + + F+ ++ + A
Sbjct: 357 FVHKNANNIYRDNNAEINFNFTQEQESNLNSGEIVEYNQYLIFKTSNNIIRQLLKLSDAI 416
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
G T ++DA ++R DW + + +KP+ L+ IL ST+
Sbjct: 417 GETDDFDAKIGL---RKIRGDWWGGFYKDMMNINKEANLVWKAGKKPKRLIKDILEISTQ 473
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
D++LD F GSGT+ AVA K++R +IGIE +I R+ V ++
Sbjct: 474 ENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIENITKARLKKVIEGEQGGISKKCDF 533
Query: 283 RTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
+ + L E L QIL N +
Sbjct: 534 KGGGSFVYAELKEVNLEVKRQILNAKNTNECLKI 567
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K I+ DPPYN + Y + +
Sbjct: 162 NYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNYNDN--------------FN 207
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
++ F + L A R L NG ++V + + ++
Sbjct: 208 HSSWLVFMKNRLEAAREFLSDNGVIFVQCDDNEQAYLKVLM 248
>gi|308234573|ref|ZP_07665310.1| DNA (cytosine-5-)-methyltransferase [Atopobium vaginae DSM 15829]
gi|328944362|ref|ZP_08241825.1| methylase [Atopobium vaginae DSM 15829]
gi|327491077|gb|EGF22853.1| methylase [Atopobium vaginae DSM 15829]
Length = 655
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 62/192 (32%), Gaps = 17/192 (8%)
Query: 1 MSQKNSLAINENQNSIFEWK---DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN 54
+ + IN + + +K + IIKGN++ L L V I+ DPPY
Sbjct: 166 LGNLDPNTINVEEETGITFKSDDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYYF--- 222
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
+ + + ++ + F + L ++L +G++W+ + +
Sbjct: 223 -------NKTIGEDSFKYNSNFKMSTWLTFMKNRLELANKLLSSHGSIWIHMGEDGMHYL 275
Query: 115 GTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+ + + RK+ + + ++ + + ++ K
Sbjct: 276 KVLADDVFGKEHFVGTIPRKTRDGKSDVPFNLSQDFDWILVYTKANESDAVVGRQVERKY 335
Query: 174 ANEDVQMRSDWL 185
D W
Sbjct: 336 YETDDFPGKPWR 347
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G+ + N KPE L+ IL S+ P D++LD GSGT+ AVA K+ R +IG
Sbjct: 454 GNNEITNLFSRDEFDYAKPEELIRSILEISSNPTDLVLDFHLGSGTTAAVAHKMGRRYIG 513
Query: 251 IEMKQDYIDIATKRIAS 267
+E DI +R+
Sbjct: 514 VEQMDYIQDITVERLKK 530
>gi|16802514|ref|NP_463999.1| hypothetical protein lmo0470 [Listeria monocytogenes EGD-e]
gi|224502230|ref|ZP_03670537.1| hypothetical protein LmonFR_06869 [Listeria monocytogenes FSL
R2-561]
gi|16409847|emb|CAC98549.1| lmo0470 [Listeria monocytogenes EGD-e]
Length = 209
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 16/160 (10%)
Query: 126 LNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASP------SPKAKGYTFNYDALKAANEDV 178
+ +W K+ + ++ AHE ++ K G+T + K +
Sbjct: 42 RYEWIWEKTAATGHLNAKKMPLKAHENILVFYKKLPIYNPQKTVGHTAVHSYTKKQTDGS 101
Query: 179 QMRSDWLIPICSGS-ERLR--------NKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
GS ER +K LHPTQKP AL ++ + T G ++L
Sbjct: 102 NYGRTKAGITGGGSTERYPRSVLTFKSDKQKSSLHPTQKPVALFEYLIKTYTNEGGLVLY 161
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
GSGT+ R +IG E + + + RIA+
Sbjct: 162 NCMGSGTTAIACLNTNRKYIGFETDVGHYESSLSRIANHC 201
>gi|315638217|ref|ZP_07893399.1| type III restriction/modification enzyme, methylase subunit
[Campylobacter upsaliensis JV21]
gi|315481753|gb|EFU72375.1| type III restriction/modification enzyme, methylase subunit
[Campylobacter upsaliensis JV21]
Length = 452
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 37/228 (16%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF-- 75
+ IIKG+++ L+ L + +I+ DPPYN + +Y +
Sbjct: 95 NIIIKGDNLHALKLLKSAYDGKIKMIYIDPPYNTKNEKFIYDDNFVKEYQKLLIELDLLK 154
Query: 76 -----------------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH--- 109
+ + +F L R +LK +G +++ +
Sbjct: 155 LDSNGKVLEKSEVLHFLTNPSGDKAHSGWLSFMLPRLKLARDLLKDDGVIFISIDDNEQA 214
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPN----FRGRRFQNAHETLIWASPSPKAKGYT 165
N+ + + ++ N V + +G+ +NA L +A + K
Sbjct: 215 NLKILCDEIFGEENFVANLCVELSTTQGMKVASAQKGQIVKNAEYILCYAKDNQNFKFER 274
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
Y A + + + E L++K QK E L
Sbjct: 275 PLYTAKEWDDHYSVYIDPESKKRTTLLEFLKDKYPNIT--KQKIEELY 320
>gi|153810297|ref|ZP_01962965.1| hypothetical protein RUMOBE_00678 [Ruminococcus obeum ATCC 29174]
gi|149833476|gb|EDM88557.1| hypothetical protein RUMOBE_00678 [Ruminococcus obeum ATCC 29174]
Length = 658
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ + + TQKPEAL+ RI+ +S+ DI+ D F GSG + AV+ KL R FI ++ + I
Sbjct: 328 NEKVDYATQKPEALIERIISASSNENDIVADFFAGSGVTAAVSHKLNRKFITSDIGLNSI 387
Query: 259 DIATKRI 265
R+
Sbjct: 388 QTTRDRL 394
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 29/194 (14%)
Query: 21 DKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNG--QLYRPDHSLV----------- 65
+ +I+G +S L +S VDL++ DPP+ + ++Y + V
Sbjct: 60 NMVIRGECVSACAYLKEQSIQVDLVYIDPPFASGADYAKKVYIRRNPKVAEVIARAEQEL 119
Query: 66 ----------DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D WDK E Y ++ L+A + V+ + +++V YH +
Sbjct: 120 DVDELRAFEEKMYGDIWDK----EKYLSWMYENLMAIKSVMSESASIYVHLDYHIGHYVK 175
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
+L + + + N + + + + S + Y +
Sbjct: 176 ILLDEIFGEDNFRNEIIWKRATAHSDAEFYGNNFDCIYFYTKSQTEYVFNTVYQPYDESY 235
Query: 176 EDVQMRSDWLIPIC 189
R+D
Sbjct: 236 IARFSRTDPDGRKW 249
>gi|312601356|gb|ADQ90611.1| Putative type III restriction-modification system: methylase
[Mycoplasma hyopneumoniae 168]
Length = 593
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/220 (16%), Positives = 68/220 (30%), Gaps = 21/220 (9%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP-----------AKSVDLIFADPPYNL 51
+ S NEN + + +I G + L+ L D+I+ DPPYN
Sbjct: 80 ENLSFKFNENNQNP----NTLIIGENYDGLKNLLVIERERERERERGGFDIIYIDPPYNT 135
Query: 52 ---QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ +G + + A + S + L R +LK +G ++V
Sbjct: 136 EATKNDGNSIANEKDDIKASKFIYRDKFSRNGWLNLMNERLKLARDLLKEDGIIFVSIDD 195
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
+ ++ + + + N GR+ K + FN
Sbjct: 196 AEQAYLKVLMDEIFG---EENFVANFPFISNLSGRQVNTNLALCHEYLLLYKKNNFIFNK 252
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
AN + + + + NK+ P QK
Sbjct: 253 IDKDYANNFMPIVYPERSNVIFNEDPDVNKEIYDNSPEQK 292
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------R 246
++ ++ EK+ K AL+ ++ +LD F GSGT+G +L R
Sbjct: 424 NKIFSESSEKVFNFPKSTALIEYLINLHPNKNARVLDFFAGSGTTGQAVLELNSQDGGTR 483
Query: 247 SFIGIEMKQDYI--DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
SF I Q+ I ++ +R+ + E K+ +P +
Sbjct: 484 SFTLITNNQNKIAENVTYERLFRINHGFGTKKEQNFDWIKKNQPYKTNLDVFRINYF--N 541
Query: 303 QILTNAQGNISATVC 317
+ N + +++ V
Sbjct: 542 TEIFNKENDVNLLVK 556
>gi|163797174|ref|ZP_02191128.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
gi|159177469|gb|EDP62023.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
Length = 439
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/268 (15%), Positives = 83/268 (30%), Gaps = 31/268 (11%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKF 75
+++ G+S + +L + DPPY + +G + + +WD
Sbjct: 176 HRLLCGDSTKPEDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDS 234
Query: 76 -SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ YD F A + + + + + + ++ I+W K
Sbjct: 235 SQGSDLYDGFIA---AAVAEAIAEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 291
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ +H + + D + S W +P + ER
Sbjct: 292 RGV-------LTRSH-----YLWKHEPCFMGWRRPNRPPKVADETLASTWELPSFAKDER 339
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HPT KP + G + +PF GSG+ + R +E+
Sbjct: 340 P-------DHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVFAMEIS 392
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGK 282
Y+D+A +R + G+
Sbjct: 393 PAYVDVAVER--WQAETDRDAVLDGDGR 418
>gi|317177075|dbj|BAJ54864.1| Type II DNA modification enzyme [Helicobacter pylori F16]
Length = 390
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
YD + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYDKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTCNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP L+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVELIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 320 QAVIEVNKDYY 330
>gi|109946809|ref|YP_664037.1| type IIS restriction enzyme M1 protein fragment 1 [Helicobacter
acinonychis str. Sheeba]
gi|109714030|emb|CAJ99038.1| type IIS restriction enzyme M1 protein fragment 1 [Helicobacter
acinonychis str. Sheeba]
Length = 90
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + + L+KL KSVDL DPPYNL++ SWD F + E
Sbjct: 1 MNKIYIEDVFAFLDKLEDKSVDLAIIDPPYNLKIA----------------SWDSFKNDE 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
+ F+ AW+ +K G+ ++ + N L
Sbjct: 45 EFLTFSYAWIDKMLPKIKDTGSFYIFNTPFNCALFLAYLCQKKCIF 90
>gi|296535574|ref|ZP_06897755.1| prophage LambdaMc01 [Roseomonas cervicalis ATCC 49957]
gi|296264090|gb|EFH10534.1| prophage LambdaMc01 [Roseomonas cervicalis ATCC 49957]
Length = 111
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R +D +H TQKP A + R + +S+ G + +PF GSGT+ A+ R+ +E+
Sbjct: 10 RGQDAATIHGTQKPVACMRRPIENSSSAGQAVYEPFCGSGTTLIAAEMTGRACHALELDP 69
Query: 256 DYIDIATKR 264
Y+D+A +R
Sbjct: 70 AYVDVAVQR 78
>gi|18202054|sp|O52513|MTS1_STRFI RecName: Full=Modification methylase SfiI; Short=M.SfiI; AltName:
Full=N-4 cytosine-specific methyltransferase SfiI
gi|2761010|gb|AAB95366.1| SfiI methyltransferase [Streptomyces fimbriatus]
Length = 421
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/213 (20%), Positives = 71/213 (33%), Gaps = 45/213 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+S+ L KLP +S++ + PPY + + + + Y
Sbjct: 31 LYVGDSLDCLAKLPDESINTVVTSPPYWAVRDYE-----------HDEQLGLEDEVDDYV 79
Query: 83 AFTRAWLLACRRVLKPNGTLWVIG--SYHN-----------------------IFRIGTM 117
RVL +G+ W+ SY N FR+
Sbjct: 80 ERLVKIFREVYRVLATDGSAWLNIGDSYFNKQITVGGKPPRTGWKRNKQLSLVPFRVALA 139
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN-- 175
LQ+ +WI N VW K N MP R E + + ++ Y FN D ++ +
Sbjct: 140 LQDDGWWIRNVAVWHKPNAMPASVRDRLTVTWEPVFLLTK---SERYYFNLDEIRVPHQT 196
Query: 176 ----EDVQMRSDWLIPICSGSERLRNKDGEKLH 204
E + S + G + LR H
Sbjct: 197 SDAIERRRAESGTVTGKAQGKKELRKWLNSPRH 229
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
+A+ D R+ + H P L L ++
Sbjct: 312 YDEAMTVEVGDNVFRNHPNGKNPGDLLSIPTAPSGANHFAVMPRKLAHFALKATLPMNGS 371
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
LDPF GSGT+G V ++L F+G+++ + Y
Sbjct: 372 CLDPFMGSGTTGRVVRELGGRFVGVDVNEHY 402
>gi|328545380|ref|YP_004305489.1| ParB domain protein nuclease [polymorphum gilvum SL003B-26A1]
gi|326415122|gb|ADZ72185.1| ParB domain protein nuclease [Polymorphum gilvum SL003B-26A1]
Length = 454
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/268 (17%), Positives = 83/268 (30%), Gaps = 31/268 (11%)
Query: 21 DKIIKGNSISV--LEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKF 75
+++ G+S S + +L I DPPY + +G + + A +WD
Sbjct: 179 HRLLCGDSTSASDVRRLMNGE-RAILFATDPPYLVDYDGSNHPTRNKDWSASYGTTWDDS 237
Query: 76 SSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S YD F A + + + + + + ++ I+W K
Sbjct: 238 SQGAELYDGFIA---AAVAEAIAEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 294
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + HE P E+ + L
Sbjct: 295 RGV--LTRSHYLWKHEPCFMGWRRPNRPPKVA---------EETLPSTWALPSFA----- 338
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
KD HPT KP + G + +PF GSG+ + R +E+
Sbjct: 339 ---KDDRPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVFAMEIS 395
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGK 282
Y+D+A +R G + G+
Sbjct: 396 PAYVDVAVER--WQAETGRDAILDGDGR 421
>gi|209883964|ref|YP_002287821.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
gi|209872160|gb|ACI91956.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
Length = 455
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 84/250 (33%), Gaps = 29/250 (11%)
Query: 21 DKIIKGNSISVL--EKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVD-AVTDSWDKF 75
+++ G+S +++ +L I DPPY + +G + + + +WD
Sbjct: 176 HRLLCGDSTNIVDVRRLMNGE-RAILFATDPPYLVDYDGTNHPTQNKDWSPSYGTTWDDS 234
Query: 76 SSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S YD F A + + + + + + ++ IVW K
Sbjct: 235 SQGAELYDEFIA---AAVAEAIAEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIVWVKE 291
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ +H + + + + S WL+P + ER
Sbjct: 292 RGV-------LTRSH-----YLWKHEPCFMGWIKGKRPPKVAEETLPSTWLLPSFAKDER 339
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
HPT KP + G + +PF GSG+ + R +E+
Sbjct: 340 P-------DHPTPKPLDAFGIPMRQHVTRGGLCYEPFCGSGSQIMAGEANDRRVYAMEIS 392
Query: 255 QDYIDIATKR 264
Y+D+A +R
Sbjct: 393 PAYVDVAIER 402
>gi|159899439|ref|YP_001545686.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892478|gb|ABX05558.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
ATCC 23779]
Length = 309
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HP+ KP ALLS I+ TKP +LDPF G G + + +R IGIE+ YID+
Sbjct: 73 RKAHPSPKPPALLSEIIRFFTKPNGWVLDPFAGVGGTLLACAQTQRQAIGIELSPHYIDL 132
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 23 IIKGNSISVLEK--LPAKSVDLIFADPPYNL-----QLNGQLYRPDHSLVDAVTDSWDKF 75
+++G++ VL + + DL+ DPPY+ + + + + + D D
Sbjct: 147 VLQGDAREVLNSPSIQQQRFDLVLTDPPYSSMLSRARTGQRRKQGNGAATPFTDDPADLG 206
Query: 76 S-SFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
+ + + + + + L+ G L +
Sbjct: 207 NVDYPTFLRELTSIVAQTLQSLRVGGHLVLF 237
>gi|331703800|ref|YP_004400487.1| adenine specific DNA methylase [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328802355|emb|CBW54509.1| Adenine specific DNA methylase [Mycoplasma mycoides subsp. capri LC
str. 95010]
Length = 239
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 31/242 (12%)
Query: 13 QNSIFEWKDKIIKG-NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+N E+ K G + + +L + ++ ++F DP Y L+ Y + + S
Sbjct: 24 KNERMEFNHK--YGLDGLVILNNIKDNAIPVVFFDPQYRGVLDKLSYGNEGKR--QIKRS 79
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
+ + E F + RVL P G L++ ++ + + + D++
Sbjct: 80 ELQQMTEEKIIHF----IREMDRVLIPTGHLFLWVDKFHLCQGISDWIKDTSLSIVDMIV 135
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ M + + Y +DV +
Sbjct: 136 WDKDKMG---------------MGYRTRRQCEYLIVLQKKPIRAKDVWRLRNIRDVW--- 177
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ K +K+HP QKP L ++ + + PGD+I+D GS + + R FIG
Sbjct: 178 ----KEKIVDKVHPHQKPIELQKILIQAVSNPGDVIMDVAAGSFSVLTSCIETGRLFIGT 233
Query: 252 EM 253
++
Sbjct: 234 DI 235
>gi|331266269|ref|YP_004325899.1| putative type III restriction/modification system modification
methylase [Streptococcus oralis Uo5]
gi|326682941|emb|CBZ00558.1| putative type III restriction/modification system modification
methylase [Streptococcus oralis Uo5]
Length = 663
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 18/192 (9%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
N I + + IIKGN++ L L V LI+ D PYN +R + S
Sbjct: 161 NVEEIKDTDNLIIKGNNLIALHSLKKRFAGKVKLIYIDVPYNTG--NDSFRYNDS----- 213
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILN 127
+ ++ F + L+ +++L +G ++V + + M+
Sbjct: 214 -------FNHSSWLTFMKNRLIISKKLLSIDGLIFVQCDDNEQAYLKVMMDEIFGSENFI 266
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ + K + + ++ L K +G+ + K + ++ +
Sbjct: 267 NCIAVKMSEASGVKMNHAKSRMPKLKEYILLYKKEGFREFNEIDKYRVDTWDNENNIFLE 326
Query: 188 ICSGSERLRNKD 199
S ++R R D
Sbjct: 327 NFSITDRQRLID 338
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR------NKDGEKLHPTQKP 209
+ FN + + + + S+ C + ++ N+ G +L +KP
Sbjct: 422 KKTIFYYITEFNRETKQPRLQVIFADSNIFKNPCDFWQDIKTTGAIANEGGVQLPNGKKP 481
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
E LL RI+ STK D++LD GSGT+ AVA K+ R +IGIE ++ R+ +
Sbjct: 482 EKLLQRIIKMSTKESDVVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIEELVVNRLKN 539
>gi|218960801|ref|YP_001740576.1| putative Site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Candidatus Cloacamonas
acidaminovorans]
gi|167729458|emb|CAO80369.1| putative Site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Candidatus Cloacamonas
acidaminovorans]
Length = 300
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
R+ + +HP P +L +++ + G++++DPF GSGT+ A+ L R+
Sbjct: 45 WQFIYEKRDIRDKNIHPATFPISLAKKVISLFSHEGELVVDPFVGSGTTLVSAQDLNRNC 104
Query: 249 IGIEMKQDYIDIATKRIASVQPLGN 273
+G ++K++YI++ R+ +
Sbjct: 105 VGFDLKKEYIELCHNRLIQQNAFNS 129
Score = 36.9 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 31/172 (18%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLP-------------AKSVDLIFADPPY-NLQLNGQL 57
+ I +++I+ N+ + +++P +S+ LI PPY NL +
Sbjct: 110 KKEYIELCHNRLIQQNAFNSCKQIPIEDDARNINQYLSDQSITLILTSPPYSNLLNRERK 169
Query: 58 YRPDHSLVDAVTDSWDKFS---------SFEAYDAFTRAWLLACRRVLKPNGTLW--VIG 106
+ + + +++S S E + LK G V
Sbjct: 170 NKSRRDRDNGQLNKIEQYSQDERDLGTYSVEKWTLAIGDIFENLLPSLKYKGHCVINVPD 229
Query: 107 SYHNIFRIGTM------LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ RI L+ F + N I+W ++N + N + + + T+
Sbjct: 230 FWWENKRITLHISLTEELRKRGFELRNIIIWDRTNIVNNIGIFGWPSNYITM 281
>gi|295099437|emb|CBK88526.1| DNA modification methylase [Eubacterium cylindroides T2-87]
Length = 194
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 8/124 (6%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVT------DSWD 73
+I+ G+++ +++ D + DPPY + R + ++ D
Sbjct: 27 RILHGDTLKLVKGFQPGIFDAVITDPPYASGGTKQNERNRTTNQKYSSMKAENALPDFDG 86
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
++ + WL R+ K + + + I LQ + VW K
Sbjct: 87 DNKDQRSWTHWMAEWLYDVRKACKRGAPICLFIDWRQYPSITDALQWAGWIWRGTAVWDK 146
Query: 134 SNPM 137
P+
Sbjct: 147 GTPV 150
>gi|323467534|gb|ADX71220.1| DNA methyltransferase [Lactobacillus helveticus H10]
Length = 341
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 14/153 (9%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I++G+S+ +++K+P+ S+ LI DPPY+ + KF E +
Sbjct: 29 IVEGDSLELMKKIPSHSISLILTDPPYHSTNKKNITGDT------------KFKKDEDFL 76
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ + +R+LK NG+++ S + + + + + P F G
Sbjct: 77 DWMEQFAKEWKRILKFNGSIYCFCSSQ--MEYQLINRFSKDFNILSTITWTKPNKPGFDG 134
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
R + E L P+ + + N
Sbjct: 135 WRKKMKKENLRQWYPASERIVFMAPKYGENLFN 167
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
E +R G+ HP +KP LL + +S+ DI+LD F GSG++ A
Sbjct: 253 MQYTDIWDFETVRQYRGK--HPAEKPIDLLENAIKASSYVNDIVLDTFSGSGSTAEAALS 310
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
L R I +E++ ++ + R+ S Q
Sbjct: 311 LGRKSISMEIEDKWVQASVDRLKSTQ 336
>gi|210134458|ref|YP_002300897.1| type III R-M system methyltransferase [Helicobacter pylori P12]
gi|210132426|gb|ACJ07417.1| type III R-M system methyltransferase [Helicobacter pylori P12]
Length = 390
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMTEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 320 QAVIEVNKDYY 330
>gi|207723082|ref|YP_002253489.1| dna methylase protein [Ralstonia solanacearum IPO1609]
gi|206588274|emb|CAQ18974.1| putative dna methylase protein [Ralstonia solanacearum IPO1609]
Length = 268
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/251 (20%), Positives = 96/251 (38%), Gaps = 31/251 (12%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
LA+++ S+ + ++ K + + +L K P ++V +F DP Y ++ Y + +
Sbjct: 48 LALDKLPKSLKKLANQKTKMDGLKLLSKFPTETVPAVFFDPQYRGVMDKLDYGNEGARQK 107
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWI 125
+ + + D R +++ RVL P+G L + +H + I + +
Sbjct: 108 G------RAALSQMSDETIRNFVVEIDRVLCPSGHLLLWVDKFHLVEGIDAWTEGTSLET 161
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
++ + W K +R RR L K + + +
Sbjct: 162 VDLVTWDKGRIGMGYRTRRKSEYLIILQKLPKKAKGHWTSHDIPDVWLEKVGRH------ 215
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
HP KPE L S I+ + KPGD ++DP G + A
Sbjct: 216 ------------------HPHAKPEQLQSAIINAIVKPGDFVVDPASGGFSVMRSAINAG 257
Query: 246 RSFIGIEMKQD 256
R+FIG ++K D
Sbjct: 258 RNFIGCDLKVD 268
>gi|308063122|gb|ADO05009.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
pylori Sat464]
Length = 390
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 320 QAVIEVNKDYY 330
>gi|227501379|ref|ZP_03931428.1| possible site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
35098]
gi|227216433|gb|EEI81850.1| possible site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
35098]
Length = 126
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + + H P L+ + + +ILDPF GSGT G V
Sbjct: 37 DNVPKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMV 96
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
A ++ R +IGI++ +DY IA +RI
Sbjct: 97 AIRMDREYIGIDINKDYCQIAKERIEK 123
>gi|188527067|ref|YP_001909754.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
pylori Shi470]
gi|188143307|gb|ACD47724.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
pylori Shi470]
Length = 390
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 320 QAVIEVNKDYY 330
>gi|15611314|ref|NP_222965.1| type II DNA modification (methyltransferase [Helicobacter pylori
J99]
gi|4154761|gb|AAD05820.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIEEHLILAKAVLKQSGCIFISMDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 320 QAVIEVNKDYY 330
>gi|261840081|gb|ACX99846.1| hypothetical protein HPKB_1299 [Helicobacter pylori 52]
Length = 378
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
T KPEAL+ RIL ST+ D++LD F GSGT+ AVA K++R +IGIE I +R+
Sbjct: 196 TPKPEALIQRILEISTQENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERL 255
Query: 266 ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV--------- 316
V ++ + + L E L QIL + +
Sbjct: 256 KKVIEGEQGGISKKCDFKGGGSFVYTELKEVNLEVKKQILNTKSKSECLKIFDNLSERFL 315
Query: 317 -CADGTL 322
ADG +
Sbjct: 316 KRADGKM 322
>gi|227501385|ref|ZP_03931434.1| possible site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
35098]
gi|227216424|gb|EEI81846.1| possible site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
35098]
Length = 126
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + + H P L+ + + +ILDPF GSGT G V
Sbjct: 37 DNVPKFRNNRDIWTINTSAFKGKHYAVFPPKLVELCIKAGCPKKGLILDPFMGSGTVGMV 96
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
A ++ R +IGI++ +DY IA +RI
Sbjct: 97 AIRMDREYIGIDINKDYCQIAKERIEK 123
>gi|254778964|ref|YP_003057069.1| TCGA site-specific m6A methyltransferase [Helicobacter pylori B38]
gi|254000875|emb|CAX28809.1| TCGA site-specific m6A methyltransferase [Helicobacter pylori B38]
Length = 390
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 3/170 (1%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ + + + + R + + + + Y+ S
Sbjct: 206 PRSVAIQEINLFLEPLKSRGWSSDEKLKDLYYQNRLIFKNNRPYEKYYLKESQDNCLSVL 265
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
G++ L + L T KP L+ +L+ ST IILD F GSGT+ +
Sbjct: 266 DFYSRQGTKDLEKLGLKGLFKTPKPVGLIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEA 325
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
R + ++ + + P L + T P + L
Sbjct: 326 NRDY---DLNWSFYLCQKEEKIKNNPQAASILKNKGYQNTIPNIMLLRLE 372
>gi|323967422|gb|EGB62843.1| DNA methylase [Escherichia coli M863]
Length = 331
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
T N +D ++ + K +PT+K +L +I
Sbjct: 172 KGEIHWSKTGNPRRKVYLTQDKKLPLTDYWDQFRDAHHQSIKI--TGYPTEKNFDMLKKI 229
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
+ +ST GD++LDPF GSGT+ A++L R ++GI+ I + +R+ +
Sbjct: 230 IAASTNVGDLVLDPFCGSGTTLHAAQELDRKWLGIDQSFQAIITSIRRLKYGLEPMGDFV 289
Query: 277 TVLTGKRT 284
+++
Sbjct: 290 KSNAAEKS 297
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPN 139
+ F R L+ R +L +G++++ + +F + ++ +++ RK N
Sbjct: 21 WIEFIRRRLIFMRELLTNDGSIYIHIGHQMLFHLKIIMDEVFGEENFRNLIIRKKCSSKN 80
Query: 140 FRGRRFQNAHETLIWASPSPK 160
+ ++ N ++ +++ S S K
Sbjct: 81 YTKNQYPNINDYILFYSKSKK 101
>gi|317008910|gb|ADU79490.1| type III R-M system methyltransferase [Helicobacter pylori India7]
Length = 384
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKNSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 6/117 (5%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP L+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLDKLGLKGLFKTPKPVELIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
++ + + + + + +++L K + ++ +L+
Sbjct: 320 QAVIEVNKDYY---LNWSFYL---CQKEEKIKNNPQAISILKNKGYQNTISNIMLLR 370
>gi|206600247|ref|YP_002241853.1| gp66 [Mycobacterium phage Ramsey]
gi|206287335|gb|ACI12678.1| gp66 [Mycobacterium phage Ramsey]
Length = 316
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/300 (14%), Positives = 87/300 (29%), Gaps = 58/300 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+S L ++ +++VDL PP+ D +S +
Sbjct: 15 TLLLGDSCERLSEIESETVDLSVCSPPFASLFTYSPSVRD----------LGNSASRREF 64
Query: 82 DAFTRAWLLACRRVLKPNGTLW------------------------VIGSYHNIFRIGTM 117
+ RV KP VI ++ N
Sbjct: 65 FEHYGFIIREQLRVTKPGRLACIHVQQLTTTKATDGYMGMTDFRGQVIAAFQNAGWYFNG 124
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE-----TLIWASPS-------------- 158
+ + +S+ + R A L+
Sbjct: 125 EVTVWKDPQAQSIRTRSHALAFATKNRDSAATRPALADYLLLFRKPGDNAVPIKNDVTND 184
Query: 159 ---PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR--NKDGEKLHPTQKPEALL 213
A ++ ++D + W + + + + ++ H +
Sbjct: 185 EWIEWASPIWTDHHDGGWLSDDGHICPVWYGIRETDTLNTKVAKESADERHICPLQLGFV 244
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R + + PG+++L PF G G+ A KL R IGIE+K Y A + ++ +
Sbjct: 245 ERCVRLWSNPGELVLTPFAGIGSELYQAVKLGRRAIGIELKPSYWRTAVDNMRALDAEMS 304
>gi|167621206|ref|ZP_02389837.1| hypothetical protein BthaB_33186 [Burkholderia thailandensis Bt4]
Length = 277
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ + Q+P ALL RI+ +T D+I+DPF GSGT+ A L R +IG + D +
Sbjct: 3 NERCDYEEQQPLALLERIIEVTTNEEDLIVDPFMGSGTAIVAAVNLNRRWIGADTSDDAV 62
Query: 259 DIATKRIASVQPLGN 273
I+ +R+A + P +
Sbjct: 63 TISAERLAKLLPSMS 77
>gi|317180065|dbj|BAJ57851.1| Type II DNA modification enzyme [Helicobacter pylori F32]
Length = 390
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 3/160 (1%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ + + + + R + + + + Y+ S
Sbjct: 206 PRSVAIQEINLFLEPLKSRGWSSDEKLKDLYHQNRLIFKNNRPYEKYYLKESQDNCLSVL 265
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
G++ L + L T KP AL+ +L+ ST IILD F GSGT+ ++
Sbjct: 266 DFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEV 325
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ + + + + P L K T
Sbjct: 326 NKDYY---LNWSFYLCQKEETIKNNPQAASILKNKGYKNT 362
>gi|316983709|gb|EFV62690.1| DNA methylase family protein [Neisseria meningitidis H44/76]
Length = 207
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 73/243 (30%), Gaps = 50/243 (20%)
Query: 31 VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
++ + P K DL DPPY + + R + Y +
Sbjct: 3 LMSRYPDKYFDLAIVDPPYGIL--NKTKRGGDYKFN-----------MNEYSQWD----- 44
Query: 91 ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+KP+ T + + +FR+ ++ R +N E
Sbjct: 45 -----IKPDQTYF-----NELFRVSKNQIIWGGNYFGELWLRSEYNKGFI--IWDKNQPE 92
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
TL S + A + + + K HPTQKP
Sbjct: 93 TLNNFSMAEMAWSSFDRPSKIFRFSVRK--------------------NRNKTHPTQKPV 132
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
L +L K GD ILD GSGT + E+ DY + ++I + P
Sbjct: 133 ELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSDYYQQSIEKIKNNLP 192
Query: 271 LGN 273
Sbjct: 193 EAR 195
>gi|317181602|dbj|BAJ59386.1| Type II DNA modification enzyme [Helicobacter pylori F57]
Length = 164
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
>gi|163735089|ref|ZP_02142525.1| Modification methylase DpnIIB [Roseobacter litoralis Och 149]
gi|161391547|gb|EDQ15880.1| Modification methylase DpnIIB [Roseobacter litoralis Och 149]
Length = 390
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 54/139 (38%)
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
L+ V R G + + +A Y + ++ A S
Sbjct: 222 LDWSVLRDRLVQQGQAGLLPPSKESCIYDLIAYAEAGHYHWQHEPAWYAVRGTGHWSGDR 281
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
S R++D +H TQKP + R ++++ G I +PF GS TS A+
Sbjct: 282 RQSTLWSIPNRDQDATTVHGTQKPVECMRRPMLNNASAGQAIYEPFSGSCTSIIAAESSG 341
Query: 246 RSFIGIEMKQDYIDIATKR 264
R + IE+ Y+D+ +R
Sbjct: 342 RLCLAIELDPAYVDVTVQR 360
>gi|212696514|ref|ZP_03304642.1| hypothetical protein ANHYDRO_01052 [Anaerococcus hydrogenalis DSM
7454]
gi|212676499|gb|EEB36106.1| hypothetical protein ANHYDRO_01052 [Anaerococcus hydrogenalis DSM
7454]
Length = 585
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ I++G+++ L+ L VD+I+ DPPYN +Y ++ D
Sbjct: 72 NFILEGDNLHSLKLLEKTHKGKVDVIYIDPPYNTGNKDFIYDDNYIGS-------DDGYR 124
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ +F L R++L G ++ + + +L
Sbjct: 125 HSKWLSFMNERLRIARKLLSKEGVIFCSIGDDELSQFKIIL 165
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 10/135 (7%)
Query: 175 NEDVQMRSDWLIPICSGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
N D + D G E L + K +KP +LL+RI+ +ILD F
Sbjct: 368 NSDGVFKKDIEGTYWDGIELNNLSKEGNVKFSNGKKPLSLLNRIIKMYKYKDAVILDYFA 427
Query: 233 GSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIASVQPLGNIELTVLTGKRT 284
GSGT+G +L R +I ++ I I +R+ ++Q L +
Sbjct: 428 GSGTTGHAVVQLNKEDGGDRKYILCTNNENNICEKITYQRMKNIQGELPHNLKYYRTEFI 487
Query: 285 EPRVAFNLLVERGLI 299
++ L+
Sbjct: 488 PKLSEDEEILSSKLL 502
>gi|268324637|emb|CBH38225.1| putative N6 adenine-specific DNA methyltransferase [uncultured
archaeon]
Length = 689
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V +I+ DPPYN + D++
Sbjct: 206 ENMIIKGNNLLALHTLKTQFRGKVKMIYIDPPYNTGSDSF----------GYNDNF---- 251
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ ++ F ++ L + +L+ +G + + + + ++
Sbjct: 252 NHSSWLTFMKSRLEISKELLRKDGAIVIHCDFVEDNYLKVLM 293
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 8/145 (5%)
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
Y +D + + W + S+ N+ G +KPE LL+R++ T+
Sbjct: 456 YNIGFDGYFEEDFGKLLCDFWDDVDFNNSQ---NEGGVSFPSGKKPELLLARLISMFTQQ 512
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
+I+ D + GSGT+ AVA K+ R +IGIE + + R+ +V ++ +
Sbjct: 513 DEIVCDFYLGSGTTAAVAHKMGRQYIGIEQLDYGGNDSVIRLKNVINGDKTGIS-----K 567
Query: 284 TEPRVAFNLLVERGLIQPGQILTNA 308
+ + L++ + +
Sbjct: 568 SVNWQGGGDFIYCELMKYNEAFMDK 592
>gi|227544449|ref|ZP_03974498.1| adenine specific DNA methylase Mod [Lactobacillus reuteri CF48-3A]
gi|227185576|gb|EEI65647.1| adenine specific DNA methylase Mod [Lactobacillus reuteri CF48-3A]
Length = 490
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+ + + +IKGN++ L + + LI+ DPPYN + Y
Sbjct: 172 KATNFDDNDNLVIKGNNLIALHSIAKKYAGKIKLIYLDPPYNTGSDSFKYN--------- 222
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
D+F S + F ++ L + ++ NG + + + + ++
Sbjct: 223 ----DRF-SHATWLTFMKSRLEIAKTLMSDNGVIAIQLDDSEGPYLKVLTDSIFGRDNEL 277
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
N + + H+ + Y N +A N+D
Sbjct: 278 FTQYVLVRYANKTLKSDMDYHKQIEQ------IHYYKKNSNAEVKPNKDKVPYDYSKF 329
>gi|311741950|ref|ZP_07715760.1| DNA methylase N-4/N-6 [Aeromicrobium marinum DSM 15272]
gi|311314443|gb|EFQ84350.1| DNA methylase N-4/N-6 [Aeromicrobium marinum DSM 15272]
Length = 434
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 78/234 (33%), Gaps = 48/234 (20%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
+P +V L+ DPPY + +
Sbjct: 233 TIPPGAVSLVLTDPPY----------------SGADVQAGIYRDLAEF----------AG 266
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
RVL P G L + ++ T L V R R +A+ +++
Sbjct: 267 RVLAPGGWLVAYSPTMFLPQVLTDLSTSGLTYWWQYVIVFPQHPVQQRTRALASAYRSVV 326
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
F D + G+ R ++ HP Q+
Sbjct: 327 VFRQPGDTSLPAFTVD------------------VLPGAGRAKD----TSHPWQQAAGET 364
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
++ + T+PGD ++DPF G+G+ G A L R FIG ++ ++D+A R+A
Sbjct: 365 RPLIEALTEPGDFVVDPFCGTGSFGLDATGLGRRFIGADIDAGHVDLARSRLAD 418
>gi|332672250|ref|YP_004455258.1| DNA methylase N-4/N-6 domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332341288|gb|AEE47871.1| DNA methylase N-4/N-6 domain protein [Cellulomonas fimi ATCC 484]
Length = 373
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 177 DVQMRSDWLIPICSGSERLRNK-DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
D D + S L+ + T KPEAL++R++ ++ PGD++LD F GSG
Sbjct: 254 DTWWPGDVVGTTASAKRHLKQLLPDQVPFETPKPEALVARVIGVASDPGDLVLDLFAGSG 313
Query: 236 TSGAVAKKLRRSFIGIEMKQDYI-DIATKRIASVQPLGN 273
T+ AVA K R ++ +E ++ ++A R+ V +
Sbjct: 314 TTAAVAHKTGRRWVAVEREERTFTEVAVPRLELVVKGLD 352
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 57/191 (29%), Gaps = 16/191 (8%)
Query: 20 KDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ + G + +L L A V L DPPYN + DS +
Sbjct: 18 ENVLALGEADDLLAHLAAADVPVRLALLDPPYN----------RRTRFHHYADSQRR--- 64
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+A+ R A R +L +G+LWV + + T+L + M
Sbjct: 65 -DAWAQDRRRQAAAVRDLLTDDGSLWVHIDDAEMPVMRTLLDEVFGPDAFVATVVWQKTM 123
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+HE L+ + + A N D D S L
Sbjct: 124 SRDSRTAVSTSHEYLLVYARNRIAWHARRNKMPPTPTQLDRYRNPDADPRGPWTSGDLMA 183
Query: 198 KDGEKLHPTQK 208
K G Q
Sbjct: 184 KAGPGRRAAQF 194
>gi|115374287|ref|ZP_01461572.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
gi|310818183|ref|YP_003950541.1| modification methylase [Stigmatella aurantiaca DW4/3-1]
gi|115368708|gb|EAU67658.1| DNA methylase [Stigmatella aurantiaca DW4/3-1]
gi|309391255|gb|ADO68714.1| Modification methylase [Stigmatella aurantiaca DW4/3-1]
Length = 452
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 152 LIWASPSPKAKGYTFNYDALKAA-NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ + KA+ T N ++ + +G+ R + + HPT K
Sbjct: 321 FFYVAKPSKAERNTGCEHLPTRITNTELPPGTKGANSPRAGANR--SGAAQNHHPTVKSI 378
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
AL+ + T PG +LD F GSG++G A FIG+E DY IA RI
Sbjct: 379 ALMRWLCRLITPPGGAVLDLFAGSGSTGVAALAEGFEFIGVERDPDYAAIACARIRHALG 438
Query: 271 LGNIELTVL 279
L
Sbjct: 439 DTMNHLEEE 447
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 15/117 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-EAY 81
+ G++ V + L S+D I DPP + G+ WD+ + +
Sbjct: 12 LFLGDAAHVGQVLGPNSIDAIVTDPPAGIGFMGR--------------EWDEDKGGRDEW 57
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ + VLKP G + T ++N F I + ++ P
Sbjct: 58 IAWLSDVMRNAMHVLKPGGHALIWALPRTSHWTTTAVENAGFEIRDIVMHLFGTGFP 114
>gi|318065865|ref|YP_004123900.1| gp78 [Mycobacterium phage Wee]
gi|315420948|gb|ADU15949.1| gp78 [Mycobacterium phage Wee]
Length = 557
Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 185 LIPICSGSERLR--NKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
G+ER N+DG K+ H T KP L+ ++ T P ++LDPF GSGT+
Sbjct: 459 YEAKAPGAERPSYVNEDGAKVAHNTVKPLDLMRWLVRLVTPPNGVVLDPFAGSGTTAEAC 518
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIAS 267
+ I IE + DY+ + R++
Sbjct: 519 IHEHKRCITIEREADYLPLIVARLSK 544
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
+ G+ + V+ KLP SVD + DPPYNL + + DA W
Sbjct: 12 TLYHGDCLDVIVKLPDNSVDAVVTDPPYNLSFMAKTWDALDGREDAGFAYW 62
Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D S + + R W C RVLKP G L G R+ +++ F + + I W
Sbjct: 196 DIAWSGNEFQDWCRLWAAECLRVLKPGGHLLAFGGTRTWHRLAAAIEDAGFELRDSIAWL 255
Query: 133 KSNPMP 138
+ P
Sbjct: 256 YGSGFP 261
>gi|261837491|gb|ACX97257.1| type IIS m4C methylase [Helicobacter pylori 51]
Length = 233
Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 52/224 (23%), Positives = 78/224 (34%), Gaps = 36/224 (16%)
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV-------------------IGSYHN------ 110
+E Y L C R LKPNG L + I H
Sbjct: 5 EKYEDYLLGLLKVWLECYRALKPNGKLCINVPLMPMLKKVLNTHYNRHIFDLHADIQRSI 64
Query: 111 IFRIGTMLQNLNFWILNDIVWRKSN---------PMPNFRGRRFQNAHETLIWASPSPKA 161
+ + L+N L DI K P R QN E + K
Sbjct: 65 LHDLNNTLENKPKMFLLDIYIWKRANPTKRLMFGSYPYPRDFYAQNTIEFIGVFVKDGKP 124
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
K T ++ + + I +N H P L R++ +
Sbjct: 125 KQPTEEQKEQSQLTQEEWVE--FTKQIWEIPIPNKNDIAFGKHAALMPAELARRLIRLYS 182
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
GD++LDPF GSGT+ AK L+R+FIG E+ ++Y + +++
Sbjct: 183 CVGDVVLDPFSGSGTTLREAKLLKRNFIGYELYENYKPLIEQKL 226
>gi|108562687|ref|YP_627003.1| type III adenine methyltransferase [Helicobacter pylori HPAG1]
gi|107836460|gb|ABF84329.1| type III adenine methyltransferase [Helicobacter pylori HPAG1]
Length = 390
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKNSNFEYE----------------DAHT 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 4/166 (2%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ----NLNFWILNDIVWRKSNPMPNFRGR 143
L + L + +Y+ + G + + + + + + + R
Sbjct: 165 VLKEQIKELSKKEHFNFLKNYNLVDEKGEIYFAKDLSTPSHPRSVAIEEINLFLEPLKSR 224
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+ + + + Y+ S G++ L + L
Sbjct: 225 GWSSDEKLKELYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFYSRQGTKDLEKLGLKGL 284
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
T KP AL+ +L+ ST IILD F GSGT+ ++ + +
Sbjct: 285 FKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEVNKDYY 330
>gi|323650434|gb|ADX97291.1| M.EcoNI [Escherichia coli]
Length = 731
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 32/260 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ G+ VL +LP D PY + + Y
Sbjct: 490 KLYNGDCFEVLSQLPDSIFDGAITSLPYYNAKEYSS-----------------WKNIYCY 532
Query: 82 DAFTRAWLLACRRVLKPNGTL-WVIGSYH---------NIFRIGTMLQNLNFWILNDIVW 131
R K G + I Y + + +L + ++ +
Sbjct: 533 LYDIYGMFQETYRTFKEGGIFLFNIFDYFDNENTIVFSQMGKKRLILSSYIIYLAKKAGF 592
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ +G N + SP +A + + + A +E + +
Sbjct: 593 KLVGNCVWDKGEIQGNRNFNQGNNSPYYQAPLNCWEHILIFAKSESGRFNNIADNIPTKH 652
Query: 192 SER--LRNKDGEKL--HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ GE + H + + + IL+ + G ++LDP+ GS T+G A +
Sbjct: 653 KSTPVFKIIKGENIYGHSAPFSKKIPN-ILLEKMEKGSLVLDPYSGSMTTGRAALDFGIN 711
Query: 248 FIGIEMKQDYIDIATKRIAS 267
IG+E +DY ++ K I
Sbjct: 712 SIGMEFHEDYCHLSPKEIRR 731
>gi|240128406|ref|ZP_04741067.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae SK-93-1035]
Length = 212
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
++N GEK KPE L+ + +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 1 MKNLFGEKAFKNPKPEELIQDFITITTNENDIVLDYHLGSGTTAAVAHKMNRQYIGIEQM 60
Query: 255 QDYIDIATKRIAS 267
+A +R+
Sbjct: 61 DYIETLAVERMKK 73
>gi|311739382|ref|ZP_07713217.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305198|gb|EFQ81266.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 419
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 15/175 (8%)
Query: 18 EWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSW 72
+ + II +++ VL++L + + D+I+ DPPYN + YR + W
Sbjct: 52 DTDNAIIAADNLPVLQRLTSRGELFDVIYIDPPYNTGKDFVYRDNYRLRRQMRSGSYAEW 111
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVW 131
+ + L+ R VL G ++V + +L +
Sbjct: 112 -----HSQWLSMMLPRLILARDVLSAQGFIFVSIGEDEVANTRKVLDEVFGEECFAGQLI 166
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY----TFNYDALKAANEDVQMRS 182
K + HE ++ + +P G+ + +D S
Sbjct: 167 WKKAGTGKNDSKYAVVEHEYILCYARTPDNPGFNVDLHGHTSTKYNHEDDKGKYS 221
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+ KP L+ ++ + +LD F GSGT+ +L RSF +++
Sbjct: 323 VFEFPKPVRLIKHLISIAGGKNARVLDFFAGSGTTAQAVVELNNDDGGTRSFHLVQI 379
>gi|328907821|gb|EGG27584.1| DNA restriction-modification system, DNA methylase
[Propionibacterium sp. P08]
Length = 603
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ SD + E + G T KPE LL R+L+ ST GD++LD F GS T+
Sbjct: 307 LWPNSDVSHSRGAKKELVNLFPGVTAFATPKPERLLQRVLLISTGAGDLVLDAFAGSETT 366
Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASVQPLGN 273
AVA+K+ R ++ E+ +D + R+A V +
Sbjct: 367 AAVAQKMGRRWVTCELVEDTFERFTKARLAKVVNDAD 403
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 24/147 (16%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V LI+ DPP+N Y +
Sbjct: 10 NLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDN---------- 59
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
+ R LL +++L G++WV Y ++ L +
Sbjct: 60 ----LEHSVWLTMMRDRLLHMKKLLSSGGSIWVHLDYAENHKMRVSLDEVFGGENFVAEI 115
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASP 157
+ F + L+
Sbjct: 116 VWQKADSGRNDATYFSTDQDVLLVYRK 142
>gi|314927553|gb|EFS91384.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
HL044PA1]
Length = 600
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ SD + E + G T KPE LL R+L+ ST GD++LD F GS T+
Sbjct: 304 LWPNSDVSHSRGAKKELVNLFPGVTAFATPKPERLLQRVLLISTGAGDLVLDAFAGSETT 363
Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASVQPLGN 273
AVA+K+ R ++ E+ +D + R+A V +
Sbjct: 364 AAVAQKMGRRWVTCELVEDTFERFTKARLAKVVNDAD 400
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 24/147 (16%)
Query: 21 DKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +I G + + L ++P V LI+ DPP+N Y +
Sbjct: 7 NLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDN---------- 56
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
+ R LL +++L G++WV Y ++ L +
Sbjct: 57 ----LEHSVWLTMMRDRLLHMKKLLSSGGSIWVHLDYAENHKMRVSLDEVFGGENFVAEI 112
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASP 157
+ F + L+
Sbjct: 113 VWQKADSGRNDATYFSTDQDVLLVYRK 139
>gi|313837569|gb|EFS75283.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
HL037PA2]
gi|314972508|gb|EFT16605.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium acnes
HL037PA3]
Length = 577
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ SD + E + G T KPE LL R+L+ ST GD++LD F GS T+
Sbjct: 281 LWPNSDVSHSRGAKKELVNLFPGVTAFATPKPERLLQRVLLISTGAGDLVLDAFAGSETT 340
Query: 238 GAVAKKLRRSFIGIEMKQDYID-IATKRIASVQPLGN 273
AVA+K+ R ++ E+ +D + R+A V +
Sbjct: 341 AAVAQKMGRRWVTCELVEDTFERFTKARLAKVVNDAD 377
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 18/130 (13%)
Query: 32 LEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+ +L V LI+ DPP+N Y + + R
Sbjct: 1 MPELAEKYVGKVKLIYIDPPFNTAQTFASYEDN--------------LEHSVWLTMMRDR 46
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQN 147
LL +++L G++WV Y ++ L + + F
Sbjct: 47 LLHMKKLLSSGGSIWVHLDYAENHKMRVSLDEVFGGENFVAEIVWQKADSGRNDATYFST 106
Query: 148 AHETLIWASP 157
+ L+
Sbjct: 107 DQDVLLVYRK 116
>gi|13542244|ref|NP_111932.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
gi|14325677|dbj|BAB60580.1| TVG1487993 [Thermoplasma volcanium GSS1]
Length = 316
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 48/85 (56%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
R+ + +HP P +L +++ + G++++DPF GSGT+ A+ R+
Sbjct: 67 WEFYYEKRDIRDKTVHPATFPISLAKQVIELFSHEGELVVDPFVGSGTTLVAARDSNRNA 126
Query: 249 IGIEMKQDYIDIATKRIASVQPLGN 273
+G ++++ YI + +R+++ + +GN
Sbjct: 127 VGFDLQEKYIKLCAERLSTQRIVGN 151
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 18/147 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHS----LVDAVTDSWDKF 75
I+ ++ ++ +S+ LIF PPY N + + R + V+ +
Sbjct: 157 IEEDARNISNYFNEESISLIFTSPPYANLLNRERKNKSRRNRKNNQLGKVEQYSQDPRDL 216
Query: 76 SSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGS---YHN-----IFRIGTMLQNLNFWI 125
+ E+Y + L+ G + + N + + + +
Sbjct: 217 GTLDVESYTKEMGDIFEKVKPALRTKGHCVINVPDMWWENKRIAIHVYLINEMTKRGYEL 276
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETL 152
N I+W K N + + + + T+
Sbjct: 277 RNIIIWDKRNLVNQIGIFGWPSNYITM 303
>gi|291570624|dbj|BAI92896.1| putative DNA methyltransferase [Arthrospira platensis NIES-39]
Length = 362
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 10/195 (5%)
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
KF + + WL + + K N + F G + + +V
Sbjct: 169 KFDDLTLKEWLRKEWLRSGLPLRKANLACGVADAATRKYFDQGHLWYFPPPDMFEKLVRY 228
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
N G+ + ++ P + + W +
Sbjct: 229 A-----NQYGKPEGKPYFSVDGLHPLTAQEWGKMRSQFRCPH----GFTNVWQRSALRNN 279
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
ER++ +G+ +H QKP L+ I+ +S++ D+I +PF G ++ A L R E
Sbjct: 280 ERIKTPNGKAVHLNQKPLDLMQLIIQASSQEQDVIWEPFGGLFSASLAANILNRKAFACE 339
Query: 253 MKQDYIDIATKRIAS 267
+ + Y KR +
Sbjct: 340 IDETYFYYGVKRFSQ 354
>gi|296119315|ref|ZP_06837883.1| adenine specific DNA methylase Mod [Corynebacterium ammoniagenes
DSM 20306]
gi|295967707|gb|EFG80964.1| adenine specific DNA methylase Mod [Corynebacterium ammoniagenes
DSM 20306]
Length = 639
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
G++++ KPE LL IL ST+PGD++LD F GSGT+ AVA K+ R
Sbjct: 434 KNAKGNQQIDELFSRDEFSYAKPEELLEAILTVSTQPGDLVLDFFLGSGTTAAVAHKMGR 493
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
+IG+E + R+ V ++ +++ V L + G+ L
Sbjct: 494 RYIGVEQMDYTSTVTVPRLVKVIEGEQGGIS-----KSQSWQGGGSFVYAELAEQGEALM 548
Query: 307 NA 308
A
Sbjct: 549 GA 550
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQL-NGQLYRPDHSLV 65
+ + + + I+KGN++ L L + I+ DPPY Q G+ +S
Sbjct: 162 SSQVTELADDDNLIVKGNNLLALSSLVERYEGKIKCIYIDPPYFFQNRRGEDTFTYNSDF 221
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ F + L +R+L +GTLW+ + + M
Sbjct: 222 H-----------LSTWLTFMKTRLEFAKRLLHRDGTLWISIGEDGMHYLKVM 262
>gi|284054872|ref|ZP_06385082.1| adenine DNA methyltransferase [Arthrospira platensis str. Paraca]
Length = 374
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 10/195 (5%)
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
KF + + WL + + K N + F G + + +V
Sbjct: 181 KFDDLTLKEWLRKEWLRSGLPLRKANLACGVADAATRKYFDQGHLWYFPPPDMFEKLVRY 240
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
N G+ + ++ P + + W +
Sbjct: 241 A-----NQYGKPEGKPYFSVDGLHPLTAQEWGKMRSQFRCPH----GFTNVWQRSALRNN 291
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
ER++ +G+ +H QKP L+ I+ +S++ D+I +PF G ++ A L R E
Sbjct: 292 ERIKTPNGKAVHLNQKPLDLMQLIIQASSQEQDVIWEPFGGLFSASLAANILNRKAFACE 351
Query: 253 MKQDYIDIATKRIAS 267
+ + Y KR +
Sbjct: 352 IDETYFYYGVKRFSQ 366
>gi|256384315|gb|ACU78885.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
adenine DNA methylase subunit [Mycoplasma mycoides
subsp. capri str. GM12]
gi|256385148|gb|ACU79717.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
adenine DNA methylase subunit [Mycoplasma mycoides
subsp. capri str. GM12]
gi|296455587|gb|ADH21822.1| GANTC--recognizing Type II restriction modification system (MmyCIV)
adenine DNA methylase subunit [synthetic Mycoplasma
mycoides JCVI-syn1.0]
Length = 239
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 31/242 (12%)
Query: 13 QNSIFEWKDKIIKG-NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+N E+ K G + + +L + ++ ++F DP Y L+ Y + + S
Sbjct: 24 KNERMEFNHK--YGLDGLVILNNIKDNAIPVVFFDPQYRGVLDKLSYGNEGKR--QIKRS 79
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
+ + E F + RVL P G L++ ++ + + + D++
Sbjct: 80 ELQQMTEEKIVHF----IREMDRVLIPTGHLFLWVDKFHLCQGISDWIKDTSLSIVDMIV 135
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
M G R + E LI P + ++ ++ +
Sbjct: 136 WDKEKMG--MGYRTRRQCEYLIVLQKKPIRAKNVWRLRNIRDVWKEKIVG---------- 183
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
K+HP QKP L ++ + + PGD+I+D GS + + R FIG
Sbjct: 184 ----------KVHPHQKPIELQKILIQAVSNPGDVIMDVAAGSFSVLTSCIETGRLFIGT 233
Query: 252 EM 253
++
Sbjct: 234 DI 235
>gi|261837706|gb|ACX97472.1| m6A methyltransferase [Helicobacter pylori 51]
Length = 275
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
>gi|160901891|ref|YP_001567472.1| DNA methylase N-4/N-6 domain-containing protein [Petrotoga mobilis
SJ95]
gi|160359535|gb|ABX31149.1| DNA methylase N-4/N-6 domain protein [Petrotoga mobilis SJ95]
Length = 338
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 54/303 (17%), Positives = 98/303 (32%), Gaps = 59/303 (19%)
Query: 22 KIIKGNSISVLEKLP-AKSVDLIFADPPYNLQLNG----------------------QLY 58
K G S +++L V LI PP+ L +
Sbjct: 12 KYYIGKCESEIKRLKLKGKVQLILTSPPFPLNNKKQYGNLVGEDYLNWITNLAPLFSEAL 71
Query: 59 RPDHSLVDAVTDSWDK---------FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-Y 108
+ S+V + ++W+K S + A L C+ + N + +
Sbjct: 72 TDNGSIVIEMGNAWEKDRPVQSLLHLKSLMRFVENPEANLRLCQEFICYNPARLPSPAQW 131
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP---KAKGYT 165
I RI + + W ++ R + + + L+ + +
Sbjct: 132 VTIERIRAIDSFTHVWWMSK--TDYPKADNRKILRPYSKSMKKLLEKGKYNSGKRPSEHV 189
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLR---------------------NKDGEKLH 204
+ + N+ + + ++ LR K H
Sbjct: 190 ISEKSFLKDNKGSISHNVLELKQIDETKELRLPYSMLSISNTKSNDYFTKTCKKRNIIPH 249
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
P + P L S + T GD++LDPF GS T+G A+KL+R +I IE ++Y + R
Sbjct: 250 PARMPLELASFFIEFLTDEGDLVLDPFGGSNTTGFCAEKLKRKWISIEANEEYGYQSIIR 309
Query: 265 IAS 267
Sbjct: 310 FEE 312
>gi|268318802|ref|YP_003292458.1| type III restriction-modification system: adenine specific DNA
methylase [Lactobacillus johnsonii FI9785]
gi|262397177|emb|CAX66191.1| type III restriction-modification system: adenine specific DNA
methylase [Lactobacillus johnsonii FI9785]
Length = 698
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+ I + + IIKGN++ L L V LI+ DPPYN + LY
Sbjct: 173 RVSYISDDDNLIIKGNNLIALYSLEKRFAGKVKLIYLDPPYNTGTDSFLYN--------- 223
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
D+F + ++ F + L C+ +L G + + + ++
Sbjct: 224 ----DRF-NQASWLTFMKNRLEICKNMLSDEGHIVIQTDDTEQAYLKVLM 268
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 197 NKDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
NK+G+ +KPE LLSRI+ +T +++LD F GSG++ A A KL R FIG+E
Sbjct: 495 NKEGQVSFSNGKKPEELLSRIIKMATNENELVLDMFLGSGSTSATALKLNRRFIGVEQID 554
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE--RGLIQPGQILTNAQG 310
I++ KR+ +V ++ + + L+E +G ++ Q T+
Sbjct: 555 HQINLIKKRMTNVINGEKNGISEAVNWQGGGSFIYAELLEKNQGYLRAIQNATDMDK 611
>gi|17225510|gb|AAL37443.1|AF328912_2 type II DNA modification enzyme [Helicobacter pylori]
Length = 315
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/302 (15%), Positives = 94/302 (31%), Gaps = 72/302 (23%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---FEAYDAFTRAWLLACRRVLKP 98
+I+ DPP+ + + + + + +S + F + L+ + +L
Sbjct: 1 MIYIDPPFATNNHFTITNGRATTISNSKNGDIAYSDKVVGMDFIEFLKQRLVLLKELLSE 60
Query: 99 NGTLWVIGSYHNIFRIGTMLQ-----------------------NLNFWILNDIVWRKSN 135
G+++V Y + ML + + + D++ S
Sbjct: 61 QGSIYVHTDYKIGHYVKVMLDEIFGIQNFRNEITRIKCNPKNFKRIGYGNIKDMILFYSK 120
Query: 136 P--------------------MPNFRGRRFQNAHETLI--------WASPSPK------- 160
P + + + S + K
Sbjct: 121 GKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTTVPIHAPGEVESGECSKAFKGMLPPKG 180
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSG------SERLRNKDGEK-----LHPTQKP 209
T + E + S+ P +R+++ K +PT+K
Sbjct: 181 RHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDIWEFKDPQYPSYPTEKN 240
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
LL I+ +S+ I+LD F GSGT+ A L+R FIGI+ I ++ ++
Sbjct: 241 AQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSGLAIKACKNKLETIT 300
Query: 270 PL 271
Sbjct: 301 KD 302
>gi|121610646|ref|YP_998453.1| DNA modification methylase-like protein [Verminephrobacter eiseniae
EF01-2]
gi|121555286|gb|ABM59435.1| DNA modification methylase-like protein [Verminephrobacter eiseniae
EF01-2]
Length = 131
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I+ GN ++VL LP ++VD + DPPY + D + + +
Sbjct: 3 RIVLGNCLTVLPTLPDRAVDFVLTDPPY---------------LVDYQDREGRRIANDTD 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D++ R+L+ + + + R + + F + IV+ K +P
Sbjct: 48 DSWLLPAFREIHRILRDDAFCISFYGWSRVDRFFSAWRAAGFRVAGHIVFAKPYLVPRPT 107
Query: 142 GRRFQ 146
GR
Sbjct: 108 GRNPT 112
>gi|209524026|ref|ZP_03272577.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
gi|209495401|gb|EDZ95705.1| DNA methylase N-4/N-6 domain protein [Arthrospira maxima CS-328]
Length = 374
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 8/200 (4%)
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
KF + + WL + + K N + + Q ++ +++K
Sbjct: 181 KFDDLTLKEWLRKEWLRSGLPLRKAN----LACGVADAATRKYFDQGHLWYFPPPDMFQK 236
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N G+ + ++ P + + W +E
Sbjct: 237 LVGYANQYGKPDGKPYFSVDGLHPLTAEEWGKMRSQFRCPH----GFTNVWQRSALRNNE 292
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R++ +G+ +H QKP L+ I+ +S++ D+I +PF G ++ A L R E+
Sbjct: 293 RIKTPNGKAVHLNQKPLDLMQLIIEASSQERDVIWEPFGGLFSASLAANILNRKAFACEI 352
Query: 254 KQDYIDIATKRIASVQPLGN 273
+ Y KR + V +
Sbjct: 353 DETYFYYGVKRFSQVFYQCS 372
>gi|313905792|ref|ZP_07839151.1| DNA methylase N-4/N-6 domain protein [Eubacterium cellulosolvens 6]
gi|313469398|gb|EFR64741.1| DNA methylase N-4/N-6 domain protein [Eubacterium cellulosolvens 6]
Length = 698
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 13/190 (6%)
Query: 13 QNSIFEWKDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
+ ++ +I+ ++ + +LE L A VD I+ DPPYN Y D
Sbjct: 120 NSDEDDFWHALIEADNYHALQLLEYLYAGKVDCIYIDPPYNTGAKDWKYNND------YV 173
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
DS D + + + L +++L + L V +G +L+ L
Sbjct: 174 DSNDVYR-HSKWLSMMERRLKLAKKLLNMSDSVLIVTIDEKEYLHLGCLLEELFPEAQMQ 232
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
++ S N R + + G D + + + + W +
Sbjct: 233 MIT--SVISRNGTSRENEFSRVEEYVFILRFGKMGVCRTNDNMLSEGDKGVISRVWFNFM 290
Query: 189 CSGSERLRNK 198
+ + R + K
Sbjct: 291 RTSTARSKTK 300
>gi|306824706|ref|ZP_07458050.1| DNA methylase N-4/N-6 domain protein [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|304432917|gb|EFM35889.1| DNA methylase N-4/N-6 domain protein [Streptococcus sp. oral taxon
071 str. 73H25AP]
Length = 582
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 11/151 (7%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +++G+++ L L +D+I+ DPPYN +Y D + D D + S
Sbjct: 93 NFLLEGDNLHSLHLLEKTHAGRIDVIYIDPPYNTGKKDFVY------NDKIIDKKDVY-S 145
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ +F L + +L G +++ + ++ + ++NP
Sbjct: 146 HSKWLSFMNKRLEIAKNLLSETGVIFISIDDNEQAQLKLLCNEVFGENNFLTQFIVENNP 205
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
E I + + + + N
Sbjct: 206 KGRKNSNFASVTSEYCISYAKNSEKAYFVEN 236
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 8/124 (6%)
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
N + +M L + + DG+ K L+ +L + +
Sbjct: 365 NRKYEAIIDNKKEMYEIDLKTTSAKRQLASLFDGKSPFDYPKNVGLIKLLLTLNDRRDIT 424
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIASVQPLGNIELTV 278
ILD F GSGT+G +L R +I ++ I ++ KR+ ++Q L
Sbjct: 425 ILDFFAGSGTTGHAVAQLNNEDGGKRKYILCTNNENNICEEVTYKRLLNIQKDLPHNLKY 484
Query: 279 LTGK 282
K
Sbjct: 485 FKTK 488
>gi|261839116|gb|ACX98881.1| hypothetical protein HPKB_0271 [Helicobacter pylori 52]
Length = 237
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 17/140 (12%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 9 ILHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAH 52
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
Y+ + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 53 ADYEKWIEEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTCNFLGTFITKQAT 111
Query: 139 NFRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 112 RSNAKHINITHEYVLSYAKN 131
>gi|300908061|ref|ZP_07125535.1| type III restriction/modification enzyme [Lactobacillus reuteri
SD2112]
gi|183398031|gb|ACC62481.1| adenine specific DNA methylase Mod [Lactobacillus reuteri]
gi|300894793|gb|EFK88141.1| type III restriction/modification enzyme [Lactobacillus reuteri
SD2112]
Length = 668
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+ + + +IKGN++ L + + LI+ DPPYN + Y
Sbjct: 172 KATNFDDNDNLVIKGNNLIALHSIAKKYAGKIKLIYLDPPYNTGSDSFKYN--------- 222
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
D+F S + F ++ L + ++ NG + + + + ++
Sbjct: 223 ----DRF-SHATWLTFMKSRLEIAKTLMSDNGVIAIQLDDSEGPYLKVLTDSIFGRDNEL 277
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
N + + H+ + Y N +A N+D
Sbjct: 278 FTQYVLVRYANKTLKSDMDYHKQIEQ------IHYYKKNSNAEVKPNKDKVPYDYSKF 329
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 8/157 (5%)
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
A+ +G + K + + + + + G++RL + G +L +KPE LL
Sbjct: 429 ATKGKYYQGVPLDVKNGKTSQKLLPIPGFIDMAGSFGNDRL--EGGVELRNGKKPEKLLK 486
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
I+ + D ++D F GSG++ A A K+ R FI IE + I KR+ +V
Sbjct: 487 NIIKYFSNKNDYVMDFFAGSGSTLATAMKMSRKFIAIEQINEQIIKINKRLNNVIHGDQT 546
Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQPGQ-ILTNAQG 310
++ + V L++ Q L + Q
Sbjct: 547 GIS-----KEVNWQGGGSFVYTELMKKNQGFLYDLQK 578
>gi|117924097|ref|YP_864714.1| site-specific DNA-methyltransferase (adenine-specific)
[Magnetococcus sp. MC-1]
gi|117607853|gb|ABK43308.1| Site-specific DNA-methyltransferase (adenine-specific)
[Magnetococcus sp. MC-1]
Length = 649
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 19/157 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWD 73
++ +I+G+++ VL+ L V +I+ DPPYN + +R + +T D
Sbjct: 100 RNLMIEGDNLEVLKLLQKSYAGKVKMIYIDPPYNTGKDFVYPDDFRDNIRNYLELTGQTD 159
Query: 74 KF-----SSFEAYDAFTRAWLLACRR-------VLKPNGTLWVIGSYHNIFRIGTMLQN- 120
S+ EA F WL +L+ +G +++ + ++ +
Sbjct: 160 GEGRRVTSNTEASGRFHTDWLNMMYPRLRLARNLLRDDGVIFISLDDTEVANARSVCDDI 219
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + + H+ +I
Sbjct: 220 FGAENFVANIVWQKKYAVSNDDPGIGVMHDHIIAYRK 256
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 10/147 (6%)
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP-SPKAKGYTFNYDALKAANE---D 177
+ I + + P + R ++ H+ L + NE
Sbjct: 304 WYSIKHPRTGEEVWPEEHAVWRYTKDKHDQLEREGRLYWGPDHSYRKPRLKRYLNEVQQG 363
Query: 178 VQMRSDWLI----PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ + W G + G+K+ T KP LL R+L G I++D F G
Sbjct: 364 IVPPTWWKFEDSGHNDEGQKETAKLIGKKVFSTPKPIRLLERLLEVGAPDGGIVVDFFAG 423
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDI 260
SG G A R+ Y+ +
Sbjct: 424 SGAFGHAAI--SRNSKISADSLKYVLV 448
>gi|13540956|ref|NP_110644.1| adenine specific DNA methylase [Thermoplasma volcanium GSS1]
gi|14324341|dbj|BAB59269.1| TVG0134727 [Thermoplasma volcanium GSS1]
Length = 348
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ TQKPEALL RI+ +S+ P I+ D F GSGT GAVA+KL R +I ++ +
Sbjct: 6 SENLGYVTQKPEALLKRIIEASSLPDSIVADFFAGSGTLGAVAEKLGRKWIMCDVGKPAC 65
Query: 259 DIATKRIASVQPLG 272
I KR++ +
Sbjct: 66 MIMRKRLSDLNARP 79
>gi|88811355|ref|ZP_01126610.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
gi|88791244|gb|EAR22356.1| adenine specific DNA-methyltransferase [Nitrococcus mobilis Nb-231]
Length = 217
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 19 WKDKIIKGNSISVLEKLPAK----SV------DLIFADPPYNLQLNGQL----------Y 58
W +K+I G++ +L L A + LI+ DPP+++ + +
Sbjct: 92 WTNKLIWGDNKLILSSLKAGALRRQIEEAGGLKLIYIDPPFDVGADFSMDIEIGGETFHK 151
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
P+ A D+W + + ++ + L+ R +L +G + + +
Sbjct: 152 EPNLLEQIAYRDTWGRGAD--SFISMIYERLILMRDLLAEDGVMLLHMGW 199
>gi|332968528|gb|EGK07589.1| site-specific DNA-methyltransferase (adenine-specific) [Kingella
kingae ATCC 23330]
Length = 586
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ ++ G KL +KPE L+ RI+ +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 382 IASEGGVKLKNGKKPEKLIKRIIELTTNENDIVLDYHLGSGTTAAVAHKMNRQYIGIEQM 441
Query: 255 QDYIDIATKRIAS 267
+A +R+
Sbjct: 442 DYIETLAVERLKK 454
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 34/226 (15%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ D P+N + + +Y DKF
Sbjct: 96 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDVPFNTENDSFVYN-------------DKF- 141
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML---QNLNFWILNDIVWRK 133
+ + F + L +++L +G + V + +L N ++ + +
Sbjct: 142 THSTWLTFMKNRLEIAKKLLSDDGIICVHTDNTEAAYVQVLLDEIFIRNNFLNHITITTN 201
Query: 134 SNPMPNFRGRRFQNAHETLIWAS---------PSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ G+ + + + +K Y NY N D +
Sbjct: 202 AASGFKATGQTIFSTSNHIFVYARNRVNSQLNKLYLSKQYDENYK-YFLLNPDEHFSNWK 260
Query: 185 LIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
I E ++ K H T+ + LL +I + K D +
Sbjct: 261 FSTILEQLSIELKLSEKEMKSHITE--QELLFKISEFADKNRDRVF 304
>gi|317010540|gb|ADU84287.1| TCGA site-specific m6A methyltransferase [Helicobacter pylori
SouthAfrica7]
Length = 387
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DVHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + L+ + LK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIEEHLILAKAALKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 29/71 (40%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP L+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVGLIKYLLLCSTPKNSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
+ R
Sbjct: 320 QAVIEANRDHY 330
>gi|207109652|ref|ZP_03243814.1| DNA methylase [Helicobacter pylori HPKX_438_CA4C1]
Length = 169
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 16/161 (9%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ ++I +S+ L+KLP +D++ PPYN +N + + +
Sbjct: 1 YLNQIYCKDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTNL--------------W 46
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS--NP 136
+ Y A C RVLK G + V I T F+I ++W+
Sbjct: 47 QEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGLIWKGEILWE 106
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
N+ + A + + + E
Sbjct: 107 KNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNNLKKEG 147
>gi|207093010|ref|ZP_03240797.1| type II adenine methyltransferase [Helicobacter pylori
HPKX_438_AG0C1]
Length = 92
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINGI 76
Query: 82 DAFTRAWLLACRRVLK 97
D F W+ ++ LK
Sbjct: 77 DEFNYQWINNAKKALK 92
>gi|118575740|ref|YP_875483.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194261|gb|ABK77179.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 339
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 24/173 (13%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S+ + + + G+S +L+ +P+ SVDL+ PPY Q + R +
Sbjct: 13 SLAPFLNTVRCGDSAKMLKDVPSGSVDLVITSPPYYQQRDYGGGRTGN------------ 60
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL-------- 126
EAY C RV K G++ ++
Sbjct: 61 EGHVEAYIDSIMQVFEQCVRVTKETGSIVFNMGDKYSQGSLMLVPYRFAIRATGSGAVRL 120
Query: 127 -NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
N+ W K+NP P RR + E + + Y +N D + V
Sbjct: 121 VNNTTWVKTNPTPRQFKRRLVSGTEPFFHFAK---SDSYCYNIDDFQRPETGV 170
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP P +++ + T G ++LDP+ GSGT+G A+ L RSF+GIE+ Y A
Sbjct: 272 NAHPAIYPVGIIAEFIRLLTPKGAVVLDPYMGSGTTGVAARSLGRSFMGIELNAGYCRAA 331
Query: 262 TKRIA 266
KRI+
Sbjct: 332 NKRIS 336
>gi|284006830|emb|CBA72095.1| phage DNA methyltransferase [Arsenophonus nasoniae]
Length = 236
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYD 82
+ G+++ ++ LP S+DLI DPPY + +WD ++ + E Y
Sbjct: 2 VNGDALPYVKTLPDASIDLILTDPPY---------------YRVKSCAWDRQWKTTEQYL 46
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
A+ +L+ +RVLKPNG+L++ S + ++ + +LN I+W K
Sbjct: 47 AWLNDYLVEFQRVLKPNGSLYLFCSA-ALAADTEIMLRNHMRVLNHIIWAKPYGRWTGCS 105
Query: 143 RRFQNAHE 150
+ ++
Sbjct: 106 KESLRSYF 113
>gi|127461|sp|P25238|MTK1_KLEPN RecName: Full=Modification methylase KpnI; Short=M.KpnI; AltName:
Full=Adenine-specific methyltransferase KpnI
gi|43889|emb|CAA43898.1| DNA methylase [Klebsiella pneumoniae]
gi|149228|gb|AAA25090.1| DNA methylase [Klebsiella pneumoniae]
Length = 417
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 19/167 (11%)
Query: 8 AINENQNSIFEWKDK---------IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG 55
++ + ++ E K+ I G++++ L+ L K++D + DPPYN
Sbjct: 17 LLSNYEFNMDELKNLSPLDSTSSSIYIGDNLTYLQGLSKTSPKTIDFCYIDPPYNTGNKI 76
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ S+ D F + +F L ++LK G + + + +
Sbjct: 77 IYHDNRKSVSS------DIFGLHNEWMSFLLPRLFHAHKMLKDTGIIAISIDDYEFAHLK 130
Query: 116 TMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
++ + + R +AHE L+ S A
Sbjct: 131 ILMDKIFGEDNFIGNIVVCRSKNGKGSKRNIASAHEYLLVYGKSDMA 177
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 31/82 (37%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
Y NY + + + +D + + G K+ T K + I+
Sbjct: 274 NGVVYVKNYSSSHKRIKVRTLWNDSSFYTERATNEITKIFGSKVFDTPKALNYIMSIINC 333
Query: 220 STKPGDIILDPFFGSGTSGAVA 241
KP +ILD F GSGT+ A
Sbjct: 334 MAKPDALILDFFAGSGTTAHAA 355
>gi|225849111|ref|YP_002729275.1| modification methylase, type III R/M system [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644056|gb|ACN99106.1| modification methylase, type III R/M system [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 1044
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 19/159 (11%)
Query: 5 NSLAINENQNSIFEWKDK-IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRP 60
L ++ + E D +IK + L L + V ++ DPPYN + LYR
Sbjct: 462 KLLVALSEESDLDEILDGVLIKSENFQALNLLLNKYREKVKTVYIDPPYNTGSDDFLYRD 521
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ- 119
++ ++ L + ++K +G ++V + + + +++
Sbjct: 522 NYQ--------------HSSWLTMMENRLKLAKELMKEDGVIFVQCDDNEVDNLNKLMEL 567
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
+ + + + + +I + +
Sbjct: 568 EYGTYNKITTFCWEKTQHFGRQKLNYYFNRDFIICFAKN 606
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
S+ ++ + ++ KP +L+S ++ + + IILD F GSGT+ KL
Sbjct: 757 SKEIKKLFNKDIYTYPKPVSLVSYLISLNNLEQMNTIILDFFAGSGTTAHAVMKLNKEDG 816
Query: 246 --RSFIGIEMKQDYIDIATKRIASVQ 269
R FI +EM + + RI V
Sbjct: 817 GKRKFILVEMADYFDTVIIPRIKKVA 842
>gi|332652973|ref|ZP_08418718.1| type III restriction-modification system, methylase subunit
[Ruminococcaceae bacterium D16]
gi|332518119|gb|EGJ47722.1| type III restriction-modification system, methylase subunit
[Ruminococcaceae bacterium D16]
Length = 621
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 24/174 (13%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ E+ ++ I+G+++ VL+ L V +I+ DPPYN + +Y + S+
Sbjct: 85 PVKEDSRDWDTTQNLYIEGDNLEVLKILQESYLGKVKMIYIDPPYNTGSDKFMYPDNFSM 144
Query: 65 -------VDAVTDSWDKF---SSFEAYDAFTRAWLLACR-------RVLKPNGTLWVIGS 107
V D + + + F W +L +G + V
Sbjct: 145 DKEEYDIVSGRVDEYGNNIFAENNNSDPRFHSKWCSMIYERLLLSRNLLSEDGVILVSIG 204
Query: 108 YHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGR---RFQNAHETLIWASP 157
+ + + ++ KS P G R Q E ++ S
Sbjct: 205 DNELKNLQAIMDEIFGASNQVCYFVWKSRAKPTNAGNARFRPQKVSEYILVYSK 258
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 24/174 (13%)
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
++ + + +R N P K + ++
Sbjct: 300 RETMRFESHGYSPNEDFRWKAGKETIDRLYETNHMFINDDGVPMEKKYA---HEESDPLY 356
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ SD +G L + G++ T KP LL + + T G IILD F G
Sbjct: 357 PIYTYIDSDLSGTAENGKSELNSLVGKQHGFDTVKPVQLLKYMTQTFTDKGGIILDFFSG 416
Query: 234 SGTSGAVAKKLR------RSFIGIEMKQDY--------------IDIATKRIAS 267
SGT + R +I +++++ DIA KRI
Sbjct: 417 SGTIAQAVMEQNSEDSAQRKYILVQIEERCNPDGEAFRAGFRTVCDIAKKRIRQ 470
>gi|145637603|ref|ZP_01793259.1| hypothetical protein CGSHiHH_07019 [Haemophilus influenzae PittHH]
gi|145269200|gb|EDK09147.1| hypothetical protein CGSHiHH_07019 [Haemophilus influenzae PittHH]
Length = 191
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHS 63
ENQNS ++ +I+G+++ VL+ L + +I+ DPPYN +G +Y+ D
Sbjct: 92 ENQNS----ENVLIQGDNLEVLKHLKHAYKNQIKMIYIDPPYNTGSDGFVYQDDRK 143
>gi|260905599|ref|ZP_05913921.1| pseudogene (putative type III restriction-modification system
modification protein) [Brevibacterium linens BL2]
Length = 406
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 45/141 (31%), Gaps = 17/141 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ ++ G+++ L +L A + +++ DPPYN A D
Sbjct: 48 ENMLVVGDNLPALTRLLATHRGRIKVVYIDPPYNTGN-----------ALAYKDH---GH 93
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
++ F L+ R +++ +G +++ + + +
Sbjct: 94 DHASWLNFMTPRLMLARELMREDGVIFIHLDDGESAWAQLLGHEIFGEDNSLGTLIHQRA 153
Query: 137 MPNFRGRRFQNAHETLIWASP 157
F H+ + +
Sbjct: 154 KGGGNSPSFVRGHDYVHVWAK 174
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRS 247
G L + + KP L+ ++ S T PG I+LD F GSGT+
Sbjct: 283 GQNDLEDLGLGGIFSYPKPVELVKTLVASQTFFDPGAIVLDFFAGSGTTAQAVMAANER 341
>gi|37527291|ref|NP_930635.1| hypothetical protein plu3417 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786725|emb|CAE15791.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 185
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP L++ I+ SS++ GD++ D F GSG++ A KL R +G+E++++Y + +
Sbjct: 120 HPCEKPADLMAHIIRSSSREGDLVADFFMGSGSTLKAALKLNRRVLGVELEEEYFNQTKR 179
Query: 264 RI 265
I
Sbjct: 180 EI 181
>gi|330947577|gb|EGH48133.1| Csp231I DNA methyltransferase [Pseudomonas syringae pv. pisi str.
1704B]
Length = 127
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 25/118 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH------------SLVDAV-- 68
+ G+ + V+ LPA SV ++ DPPY ++ G+ + S V+A
Sbjct: 6 LHLGDCLYVMRSLPANSVHIVVTDPPYGIRFMGKSWDGQDIEDRAAYRASMPSHVEACGP 65
Query: 69 ----------TDSWD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+D + A+ AFT W C RVLKP G L + +
Sbjct: 66 NGGHRSIAAEAGKYDLTPAGMRAFQAFTLDWATECLRVLKPGGHLLSFAAARTYHHMA 123
>gi|167847537|ref|ZP_02473045.1| DNA methylase [Burkholderia pseudomallei B7210]
Length = 304
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 67/184 (36%), Gaps = 24/184 (13%)
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ AWL CR LKP G L + + + ++Q + VW K+ R
Sbjct: 132 DWCHAWLSECRCALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRR 191
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
F E ++WAS DV + + + K
Sbjct: 192 GGFAQQAEFVVWASRGAMRGC-------------DVYLPGVFPCRLPLP----------K 228
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H T+KP + ++ G ++ D F SGT A A++ ++G E Q Y I++
Sbjct: 229 QHVTEKPLDIAREVVRLV-PAGGVVCDLFAASGTFLAAAREAGLHWVGSESNQAYHAISS 287
Query: 263 KRIA 266
R+
Sbjct: 288 ARLD 291
>gi|76808626|ref|YP_335016.1| DNA methylase [Burkholderia pseudomallei 1710b]
gi|254190422|ref|ZP_04896930.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
gi|254258049|ref|ZP_04949103.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
1710a]
gi|76578079|gb|ABA47554.1| DNA methylase [Burkholderia pseudomallei 1710b]
gi|157938098|gb|EDO93768.1| DNA methylase [Burkholderia pseudomallei Pasteur 52237]
gi|254216738|gb|EET06122.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
1710a]
Length = 200
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 67/184 (36%), Gaps = 24/184 (13%)
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ AWL CR LKP G L + + + ++Q + VW K+ R
Sbjct: 28 DWCHAWLSECRCALKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRR 87
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
F E ++WAS DV + + + K
Sbjct: 88 GGFAQQAEFVVWASRGAMRGC-------------DVYLPGVFPCRLPLP----------K 124
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
H T+KP + ++ G ++ D F SGT A A++ ++G E Q Y I++
Sbjct: 125 QHVTEKPLDIAREVVRLV-PAGGVVCDLFAASGTFLAAAREAGLHWVGSESNQAYHAISS 183
Query: 263 KRIA 266
R+
Sbjct: 184 ARLD 187
>gi|270700791|ref|ZP_06223041.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
gi|270315873|gb|EFA27964.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
Length = 256
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
N +++ + E+ K+ KLHPTQKP A+L R++ T GD+++DP GS
Sbjct: 169 NNGKMIKNWFEW------EKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGS 222
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++ A++L R G E+K+D IA +++
Sbjct: 223 ASTLRAARELNRPSYGFEIKKDSCKIAKEQM 253
>gi|197248763|ref|YP_002149430.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197212466|gb|ACH49863.1| DNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
Length = 322
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/305 (17%), Positives = 100/305 (32%), Gaps = 60/305 (19%)
Query: 22 KIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQ-------------------- 56
K+ G+S+ VL V+LI PP+ L +
Sbjct: 11 KLYLGDSLDVLND-EDISKYVGKVNLIVTSPPFPLNNKKKYGNEIGEAYREWFKKLTPIF 69
Query: 57 --LYRPDHSLVDAVTDSWDKFSSFEAYD-----------AFTRAWLLA---CRRVLK-PN 99
L D SLV + ++W+ ++ + L+ C K P+
Sbjct: 70 NQLLADDGSLVIEIGNAWEPERPVQSTLHLECLFEMTKQKNSELRLIQEFICYNPAKLPS 129
Query: 100 GTLWV-------IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP----MPNFRGRRFQNA 148
WV + SY +++ + + KS + +
Sbjct: 130 PAQWVTVNRLRTVDSYTHVWWLAKTDYPKADNKKVLRPYSKSMRKLLERQTYNAGMRPSE 189
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQ---MRSDWLIPICSGSE---RLRNKDGEK 202
H+ + N+ L+ +E + S ++ R + G K
Sbjct: 190 HKISEKGFLKDHGGSISHNFFELEPIDEYRDVRLPHNVMSFSNVSSNDFFIRKCKEMGIK 249
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HP + + +++ + T D+I DPF GS T+G A+ +R ++ IE + Y + +
Sbjct: 250 PHPARMNKGIVNFFIDFLTDENDLIFDPFGGSNTTGFCAELKKRRWLAIEADEKYAEQSK 309
Query: 263 KRIAS 267
R
Sbjct: 310 VRFED 314
>gi|182682259|ref|YP_001830419.1| DNA methylase N-4/N-6 domain-containing protein [Xylella fastidiosa
M23]
gi|182632369|gb|ACB93145.1| DNA methylase N-4/N-6 domain protein [Xylella fastidiosa M23]
Length = 158
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 24/179 (13%)
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI-LNDIVWRKSNPMPNFRGRRFQNAHE 150
R+L+ +G ++ + + ++ + I+ + N NF F +E
Sbjct: 1 MMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYE 60
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ + N G ++ + HP P
Sbjct: 61 VIYLIAKPDFKLKPKAN---------------------AIGDVWTIPQESKNPHPAPFPV 99
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
L R + S +LDPF GSGT A+ L ++GIE Y++++ R+ S++
Sbjct: 100 ELAQRCIESVGAE--PVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLKSLK 156
>gi|85717732|ref|ZP_01048664.1| prophage LambdaW4, DNA methylase [Nitrobacter sp. Nb-311A]
gi|85695448|gb|EAQ33374.1| prophage LambdaW4, DNA methylase [Nitrobacter sp. Nb-311A]
Length = 193
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT KP AL++ L +K G+ ++DPF GSG++ A+ R +G E+ Y+D+A
Sbjct: 14 AHPTPKPVALIADALRDVSKRGEYVVDPFLGSGSTLMAAEATGRICVGNELDSAYVDVAI 73
Query: 263 KRIASVQPLGNIELTVLTGK 282
+R I +
Sbjct: 74 RRWQKATGQAAIHVQTGQSF 93
>gi|328948065|ref|YP_004365402.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
gi|328448389|gb|AEB14105.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
Length = 671
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
D + TQKPEALL RI+ +S+ ++ D F GSG + AVA KL R FI ++ + I
Sbjct: 329 DERIDYATQKPEALLERIIKASSDENMLVADFFGGSGVTAAVANKLNRRFIHCDVGINSI 388
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
R+ + + N + E + + + R +Q + L
Sbjct: 389 QTVRDRLIAQKETPNHVRGDVNFSVLEIKDGVS--LFRNPVQTMEKL 433
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 21/201 (10%)
Query: 21 DKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLY---RPDHSLVDAVTD----- 70
+ +I+G +S L K VDL++ DPP+ + R + L A+
Sbjct: 62 NLVIRGECVSACAYLKEKGILVDLVYIDPPFASGADYSKTVYIRQNPKLAKALKQAEEEL 121
Query: 71 SWDKFSSFEA-----------YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ SFE Y + L A + V+ +++V YH + ++
Sbjct: 122 EIEDLKSFEEKMYGDVWNKEKYLNWMYENLCAIKSVMSETASIYVHLDYHIGHYVKILMD 181
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + F N ++ + + + S A T D + +
Sbjct: 182 EIFGEDNFRSEIIWKRATAHSDSGFFGNNYDMIYFYTKSDSAIFNTIFQDYDEKYIARFK 241
Query: 180 MRSDWLIPICSGSERLRNKDG 200
+ SG+ + G
Sbjct: 242 YKDPDGRLWDSGNPTAKGLQG 262
>gi|308061614|gb|ADO03502.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
pylori Cuz20]
Length = 390
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+ ++ L+++ +S+ I+ DPPYN + + Y +
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHA 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ + + L+ + VLK +G +++ + + + ++ N F N + +
Sbjct: 45 DYEKWIKEHLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTCNFLGTFITKQATR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE ++ + +
Sbjct: 104 SNAKHINITHEYVLSYAKN 122
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 260 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 319
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 320 QAVIEVNKDYY 330
>gi|213692226|ref|YP_002322812.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213523687|gb|ACJ52434.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320458352|dbj|BAJ68973.1| putative phage DNA methylase [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 372
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 22/131 (16%)
Query: 14 NSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
S+ +W D +++ G+ ++ LP SVD + DPPY + + D D
Sbjct: 1 MSLTQWDDGRIRLMPGDCRDLIAMLPDNSVDSVITDPPYEIGFMNLGFDSTGVAFDV--D 58
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
W RVLKP G + + R+ +++ F I + I
Sbjct: 59 LW-----------------RDILRVLKPGGHVAAFAASRTYHRLACAIEDAGFEIRDQID 101
Query: 131 WRKSNPMPNFR 141
W ++ MP+
Sbjct: 102 WVYASGMPHGS 112
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
LHPT KP L+ ++ T P ++L+PF GSG + + + EM DY+ +
Sbjct: 301 LHPTVKPLELMRWLVRLVTPPDGLVLEPFAGSGATLEACRIEDVRCVAAEMDSDYVRLIA 360
Query: 263 KRIAS 267
+R+A
Sbjct: 361 RRMAR 365
>gi|217033449|ref|ZP_03438879.1| hypothetical protein HP9810_1g63 [Helicobacter pylori 98-10]
gi|216944154|gb|EEC23582.1| hypothetical protein HP9810_1g63 [Helicobacter pylori 98-10]
Length = 384
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
++ L+++ +S+ I+ DPPYN + + Y + YD + +
Sbjct: 3 ALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHADYDKWIKE 46
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + VLK +G +++ + + + ++ N F N + + +
Sbjct: 47 HLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEVFGTRNFLGTFITKQATRSNAKHINI 105
Query: 148 AHETLIWASPS 158
HE ++ + +
Sbjct: 106 THEYVLSYAKN 116
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 254 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 313
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
++ + + + + + P L K T
Sbjct: 314 QAVIEVNKDYY---LNWSFYLCQKEEKIKNNPQAASVLKNKGYKNT 356
>gi|210135555|ref|YP_002301994.1| type III R-M system methyltransferase [Helicobacter pylori P12]
gi|210133523|gb|ACJ08514.1| type III R-M system methyltransferase [Helicobacter pylori P12]
Length = 821
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/210 (14%), Positives = 64/210 (30%), Gaps = 25/210 (11%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
K+ +N S E +IK + L L +++D I+ DPPYN Q N +Y
Sbjct: 358 FKDLEEEIKNLFSEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYA 417
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI----- 114
+ ++ A L +L G ++V +
Sbjct: 418 DNFKR--------------SSWLAMMENRLELAHSLLNDKGVMFVSIDDNEQAYCKRSWT 463
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+++ RK+ N HE L+ + + + + K
Sbjct: 464 KSLMGGGGGDNFVADFIRKTKSTTNDAKTGVNYQHEFLLCYAKNKE---FVNLLGGEKNL 520
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+D + + ++ + + +
Sbjct: 521 ENYKNPDNDPNGAWINDNPSAKSGNMKTGY 550
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + SD + ++ L + ++ KPE+L++ IL +T+ D++ D F GSGT
Sbjct: 616 DSLVFSDNCYMNQAATKELISLGFAEIFKNAKPESLIATILEHATQENDLVCDFFAGSGT 675
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA KL+R +IGIEM + + + R+
Sbjct: 676 TCAVAHKLKRKYIGIEMGEHFDSVILPRLKK 706
>gi|327399854|ref|YP_004346885.1| type III restriction-modification system methylation subunit
[Lactobacillus amylovorus GRL 1112]
gi|327182524|gb|AEA32959.1| type III restriction-modification system methylation subunit
[Lactobacillus amylovorus GRL 1112]
Length = 645
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/213 (21%), Positives = 74/213 (34%), Gaps = 11/213 (5%)
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
K + ++ G Y N + ++ + N + N Q +
Sbjct: 344 HFKIDDGVYKKGHYANADLLNDLIVKNSVNENNVTIRGHFVWGQNTIEEEIQKGTYFI-- 401
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL---HPTQKPEA 211
+ K DA A E + G+ + KL KPE+
Sbjct: 402 -VKTDKFAIRFQRRDASMMAPEKWINQQYLSKIFKIGTNEDASSHVTKLGFNFNNPKPES 460
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L++ + + TK DI+LD F GSGT+ A A K+ R FIGI+ IA R+ V
Sbjct: 461 LIAFFIRAITKENDIVLDFFMGSGTTQAAALKMHRRFIGIDQMDYIKTIAVPRLRKVIAG 520
Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
E++ + V L++ Q
Sbjct: 521 EQGEIS-----KDVNWQGGGSFVYAELMEKNQQ 548
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 72/214 (33%), Gaps = 17/214 (7%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ IIKGN++ L + + LI+ DPPY + + A ++
Sbjct: 177 NLIIKGNNLLALYSIKDRYAGKIKLIYLDPPYY------FNKQKSTDSFAYNTNYK---- 226
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
+ F + L C+ +L NG + V + ++ + +
Sbjct: 227 LSTWLTFMKNRLEVCKELLCDNGAIIVSIDDDGQAYLKVLMDEIFGQNNFVETFLWRKTD 286
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ G + ++ E L ++ + A ++ + +GS +
Sbjct: 287 NADSLGNKSRSGVEYLHAYVLKNNSEKWIGKESENGDAPLLKKVNNISERTFPAGSIHFK 346
Query: 197 NKDG--EKLHPTQKPEALLSRILVSSTKPGDIIL 228
DG +K H + L I+ +S ++ +
Sbjct: 347 IDDGVYKKGHYAN-ADLLNDLIVKNSVNENNVTI 379
>gi|317501632|ref|ZP_07959824.1| site-specific DNA-methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|316896975|gb|EFV19054.1| site-specific DNA-methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
Length = 668
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 11/174 (6%)
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
P+G + + + K + N N+H +
Sbjct: 240 WTKAPSGRYYKFENMLDPQNKMAAYDFHGTVARWRTTPEKFEELWNAPQTEVPNSHGRVR 299
Query: 154 WAS--PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
K F + +D I + R + TQKPEA
Sbjct: 300 LGKNGKPIKRCRIVFMDELPGV------PLNDNWSDIAYVAGRSAESAN---YSTQKPEA 350
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
LL+RI+ SS+ I+ D F GSG + AVA KL R FI ++ + + R+
Sbjct: 351 LLNRIITSSSNENMIVADFFGGSGVTAAVANKLARKFIHCDIGLNSVQTTRDRL 404
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 33/182 (18%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRP------------------ 60
+ +I+G +S L + VDL++ DPP+ +
Sbjct: 60 NMVIRGECVSACAYLKEQGIQVDLVYIDPPFASGADYAKKVYIRRNPKVAEVIAQAEQEL 119
Query: 61 -----DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
D WDK E Y + L+A + V+ N +++V +H +
Sbjct: 120 DVDELKAFEEKMYGDVWDK----EKYLNWMYENLMAIKSVMSENASIYVHIDWHIGHYVK 175
Query: 116 TMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+L + + N + + +++ + S ++ Y FN
Sbjct: 176 ILLDEVFGEDNFRNEITWVRTASHNDSKQNYSRVKDSIFFYSR---SEEYPFNIQYTPYT 232
Query: 175 NE 176
E
Sbjct: 233 EE 234
>gi|300215358|gb|ADJ79771.1| Type III restriction-modification system methylation subunit
[Lactobacillus salivarius CECT 5713]
Length = 424
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G+ L T KPE LL RIL + D++LD F GS T+ AVA K+ R FIGIE +
Sbjct: 232 EGQALFGTPKPEKLLQRILTLGSNKNDLVLDFFMGSATTQAVAMKMGRRFIGIEQMEYIN 291
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
++ R+ V ++ + V L++ Q
Sbjct: 292 TVSVPRLQKVIEGEQGGIS-----KDVNWQGGGSFVYAELMEKNQ 331
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+I+ DPPYN + D DKF + + F ++ L +L +GT
Sbjct: 1 MIYLDPPYNTTKDF--------------DYNDKF-THATWLTFMKSRLEIAWDLLAEDGT 45
Query: 102 LWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+W+ + + + + V + P + F +H+ + + +
Sbjct: 46 IWISIDDNESHYLKVLADSVFGRENFLNEVIWQRAYAPVNLKKTFSRSHDYIQVYAKNNS 105
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ AN + +
Sbjct: 106 SNKKLNRLPRSAEANSRYKNLDNDPRGPW 134
>gi|313897109|ref|ZP_07830654.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
gi|312958037|gb|EFR39660.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
Length = 298
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/297 (13%), Positives = 84/297 (28%), Gaps = 48/297 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDL---IFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ G+S V++ LP +S + IF PP+ D S E
Sbjct: 15 LYNGDSCEVMQGLPDES--MGYSIF-SPPF----------EDLYTYSDSPRDLGNCRSTE 61
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG---------------------------SYHNIF 112
+ + R+ KP + + Y +
Sbjct: 62 EFYKQFGYIVAELFRITKPGRLVSIHCMDLPTTKASDGFIGLRDFPGILRELFQDYGFYY 121
Query: 113 RIGTMLQNLNF--WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+ + + Q + ++ + K + +
Sbjct: 122 HSKITIWKDPVVAMQRTKHIGLLHKQLKKDSAMSRQGIADYIVTMRKPGENKEPITHTNE 181
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRN---KDGEKLHPTQKPEALLSRILVSSTKPGDII 227
++ + S + I + R ++ ++ H ++ R + T GD +
Sbjct: 182 SFPVSKWQEYASPVWMNIRQSNTLNRTSAREERDEKHICPLQLDVIERCIELWTNQGDTV 241
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
PF G G+ + K+ R +GIE+K+ Y + A K + G
Sbjct: 242 FTPFLGIGSEAYQSIKMHRKAVGIELKESYFEQAVKNCERAANAEEQLEFLFEGDEE 298
>gi|306818542|ref|ZP_07452265.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|304648715|gb|EFM46017.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
Length = 213
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 24/166 (14%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKG---NSISVLEKLPA------KSVDLIFADPPYNLQ 52
+ + E + + + +I G + + L ++P V LI+ DPP+N
Sbjct: 56 PKNDKSRYTERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTA 115
Query: 53 LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
Y + + R L+ +++L+ +G++WV +
Sbjct: 116 QTFANYEDN--------------LEHSVWLTMMRDRLVNLKKLLREDGSIWVHLDDVEVH 161
Query: 113 RIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
R+ +L V + N F ++ +T++ S
Sbjct: 162 RMRLLLDEIFGSENFISEVIWQKAYGGNNSSVEFVSSTDTVLVYSK 207
>gi|331028047|ref|YP_004421762.1| DNA methylase [Synechococcus phage S-CBS3]
gi|294805660|gb|ADF42498.1| DNA methylase [Synechococcus phage S-CBS3]
Length = 754
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/309 (15%), Positives = 85/309 (27%), Gaps = 53/309 (17%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSL 64
+ S +W + G+ + + KL S+ PP+ N + + + D
Sbjct: 452 DHQSGRDWD--LYLGDCVESIGKLDDDSIHYSIFSPPFASLYTYSNSERDMGNSKDDQEF 509
Query: 65 VDAV--------------------------TDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
D + D F + + A V
Sbjct: 510 FDHFVFLAKELHRVLMPGRLISFHCMNLPSSKERDGFIGVKDFRGDMLRIFQAAGFVFHS 569
Query: 99 NGTLW-----------VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+W IG H R + L V + + G +
Sbjct: 570 EVCIWKDPVTAMQRTKAIGLLHKQVRKDSALSRQGIPDYLVTVRKLGDNPEPCAGPFTEF 629
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
A E + D+ R + ++ H
Sbjct: 630 AGENGPRKTGDEIKDSINIWQRYASPVWMDINPSDTLQY-------RSARANEDERHICP 682
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
++ R + + PGD++L PF G G+ G VA + R F+G E+K Y A K +
Sbjct: 683 LQLDVIRRGMQLWSNPGDVVLSPFAGIGSEGFVALEQGRKFVGFELKPSYFGCAVKNLQV 742
Query: 268 VQPLGNIEL 276
+ L
Sbjct: 743 AESAKQASL 751
>gi|312143391|ref|YP_003994837.1| DNA methylase N-4/N-6 domain protein [Halanaerobium sp.
'sapolanicus']
gi|311904042|gb|ADQ14483.1| DNA methylase N-4/N-6 domain protein [Halanaerobium sp.
'sapolanicus']
Length = 982
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/206 (12%), Positives = 61/206 (29%), Gaps = 18/206 (8%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
++ N E K +I + L + V IF DPPYN +Y+ ++
Sbjct: 449 LLDSYNNVNDEIKGLMINSENFQTLNLIMEKYKGKVKAIFIDPPYNTGGEDFVYKDNYQ- 507
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
++ L +++ NG +++ + + +
Sbjct: 508 -------------HSSWLTMMENRLKLASKLMANNGVVFISIDDNEHSNLKKLCDEIFGK 554
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ + P R F + H+ ++ + + + +D
Sbjct: 555 NNFVSNIIWQKKYSPQNDARYFSDNHDFILAYAKNKDNWDINLLPRTEEMDERYKNPDND 614
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKP 209
P S ++ + ++ + P
Sbjct: 615 PRGPWKSSDLSVKRVTPKDIYEIRTP 640
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNK------DGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
+ + + W ++ + + + + + T K L+ RIL ++ DI++
Sbjct: 689 KDGITPMTIWTYEEVGHNQEAKQELKALLNEEDDVFDTPKTLRLIKRILRIASNKNDIVM 748
Query: 229 DPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRIASVQPLGN 273
D F GSGT+G L R +I +E+ + RI V
Sbjct: 749 DFFAGSGTTGHACLDLNEEDDGERKYIQVELGNYFYTTMLPRIKKVMYSKE 799
>gi|301307372|ref|ZP_07213377.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
gi|300837456|gb|EFK65216.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
gi|315253198|gb|EFU33166.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
Length = 182
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 18/172 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P +D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNGIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
D + + RVLK + + ++ + R +N F ++ +V+ K+ +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNY---TSK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
HE + A D L + E
Sbjct: 105 AAYVGYRHECAYVLAKGRPALPQKPLPDVLGWKYSGNRHHPTERHCCKVSDE 156
>gi|261867950|ref|YP_003255872.1| putative type III restriction-modification system modification
protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413282|gb|ACX82653.1| putative type III restriction-modification system modification
protein [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 148
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 1 MSQKNSLAINENQN---SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN 54
+ + L ++N N ++ +I+G+++ VL+ L V +I+ DPPYN +
Sbjct: 72 LPPETLLCEDKNHNAKPENANSQNLLIQGDNLDVLKHLKNAYTNKVKMIYIDPPYNTGSD 131
Query: 55 GQLYRPD 61
G +Y+ D
Sbjct: 132 GFVYQDD 138
>gi|333011769|gb|EGK31175.1| DNA methylase domain protein [Shigella flexneri K-227]
Length = 141
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 19/153 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP--- 138
D + + RVLK + + ++ + R + +N F ++ +V+ K+
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYTSKAAY 107
Query: 139 -NFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
+R + + + + + N A
Sbjct: 108 VGYRTNVPTSWQKAVHVCHKTRCRTCWAGNIRA 140
>gi|82544406|ref|YP_408353.1| DNA adenine methyltransferase encoded by prophage [Shigella boydii
Sb227]
gi|81245817|gb|ABB66525.1| putative DNA adenine methyltransferase encoded by prophage
[Shigella boydii Sb227]
gi|320184645|gb|EFW59441.1| putative DNA methylase [Shigella flexneri CDC 796-83]
gi|332094452|gb|EGI99501.1| hypothetical protein SB359474_2217 [Shigella boydii 3594-74]
Length = 95
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + + LP SVDLI DPPY + + W + Y +
Sbjct: 7 DCLEFIWSLPENSVDLIVTDPPYF-----------KVKPEGWDNQW---KGDDDYLKWLE 52
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
L RVLKP G+L++ + I M+
Sbjct: 53 QCLAQFWRVLKPAGSLYLFCGHRLASDIEIMM 84
>gi|281420026|ref|ZP_06251025.1| DNA methylase N-4/N-6 [Prevotella copri DSM 18205]
gi|281405826|gb|EFB36506.1| DNA methylase N-4/N-6 [Prevotella copri DSM 18205]
Length = 673
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 12/185 (6%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW---DK 74
+I+G++ L L VD+I+ DPPYN +G Y+ L + +
Sbjct: 71 HILIEGDNYHALTCLNYTHQGKVDVIYIDPPYNTGSDGFTYKDKRFLDKYPDGTQLPKNH 130
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
++ +F + +LK +G +++ + + + ++ +
Sbjct: 131 PLRHSSWLSFMDKRMKLASSLLKEDGVIYISINEEEYANLKLLCDSVFGYSNYITTITIK 190
Query: 135 NPMPNFRGRRFQNAHET---LIWASPSPK---AKGYTFNYDALKAANEDVQMRSDWLIPI 188
N + + HET L+ S K +K N D E ++ + I +
Sbjct: 191 VRHENRILKGDKPMHETTELLLMYRKSDKFNISKRIVDNSDPKDYIYEIEELIDNPEIIM 250
Query: 189 CSGSE 193
G +
Sbjct: 251 MGGKK 255
>gi|213967436|ref|ZP_03395584.1| DNA-methyltransferase (DNA-modification methylase) protein
[Pseudomonas syringae pv. tomato T1]
gi|213927737|gb|EEB61284.1| DNA-methyltransferase (DNA-modification methylase) protein
[Pseudomonas syringae pv. tomato T1]
Length = 148
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 34/70 (48%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP L++ +L T G LDPF GSG++G A FIGIE Y+ IA
Sbjct: 61 HPTVKPTDLMAYLLRLVTPTGGKTLDPFMGSGSTGKAAVLEGFDFIGIEQDAAYMAIAKA 120
Query: 264 RIASVQPLGN 273
RI
Sbjct: 121 RIGHAHANSQ 130
>gi|325135915|gb|EGC58525.1| type III restriction-modification system methyltransferase
[Neisseria meningitidis M0579]
Length = 644
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/218 (11%), Positives = 63/218 (28%), Gaps = 31/218 (14%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTD 70
+ I+ ++ L+ L SV +I+ DPPYN + +Y R +++ TD
Sbjct: 102 NVFIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKFSESREEYARRVGDTD 161
Query: 71 S-------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
W D + + L + +L+ +G +++ +
Sbjct: 162 DAGYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQA 221
Query: 113 RIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
++ + + + +E L+ + S +
Sbjct: 222 QLKLLCDEVFGAENFVGQFPWRKRTAKSDVPFGVSADYEYLLAYARSNAFIASIDAEERR 281
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+D + ++R ++ P
Sbjct: 282 YFETDD--FPNRPWRTHDLTTQRNASERPNSFFTMVNP 317
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
+G++ + KL KP +L+ +L +ILD F GSGT+ +L
Sbjct: 396 NGTKEITELFKSKLFDFPKPSSLIKYLLQILHVSDGLILDFFSGSGTTAHAVMQLNAEDG 455
Query: 246 --RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
R FI +++ ++ + + R A + E+ +R +++ L E I G
Sbjct: 456 GCRRFICVQLPEETDEKSEARKAGFNTI--AEIAKERIRRAGRQISDG-LQEGAEIDTGF 512
Query: 304 ILT 306
+
Sbjct: 513 KVF 515
>gi|291227261|ref|XP_002733611.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 768
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/284 (17%), Positives = 101/284 (35%), Gaps = 49/284 (17%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---------SVDLIFADPPYNLQ 52
S++ + AI +NS+ + I+ GNS+ + +P + DL+ D P
Sbjct: 518 SREKTPAIIHGRNSVKAF---IVNGNSMEI---VPEELTKITGHVTGFDLVILDTP---- 567
Query: 53 LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+W + +++ + + R PN + V+G N+
Sbjct: 568 -----------------QNW-QEKDMQSFLVTVKNVNITARL---PNYCMTVLGEMENLP 606
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALK 172
I L D + + + H ++ S T
Sbjct: 607 TIKLQLTAAGC-TKVDTAFYYVEDAISDSVTLTNSVHPVVVGYWASDGKIKRT------- 658
Query: 173 AANEDVQMRSDWLIPICSGSERL-RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ N ++ S+ + L ++ DG ++ TQK AL +++ T P +LD
Sbjct: 659 SLNITDELPSNRHNFWKTVKPVLDKDGDGVIVNSTQKNVALFEKMIEVFTYPNQWVLDAC 718
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
G+G++ A K R+ IG ++ + + A + S+ +
Sbjct: 719 CGTGSAIIAAMKCGRNCIGFDIDEKQVQHALIKCDSLIISDAED 762
>gi|186682864|ref|YP_001866060.1| DNA methylase N-4/N-6 domain-containing protein [Nostoc punctiforme
PCC 73102]
gi|186465316|gb|ACC81117.1| DNA methylase N-4/N-6 domain protein [Nostoc punctiforme PCC 73102]
Length = 355
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
KLH PE + ++++ ++LDPF G+GT+ VA +L RS IGI++ +YI
Sbjct: 287 RKLHFAPYPEDICKLPILATCPQSGVVLDPFTGTGTTNLVAFQLGRSSIGIDISGEYITA 346
Query: 261 ATKRI 265
A +R
Sbjct: 347 AHERC 351
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 21/145 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ +S ++L+ PA +D + PPY Q + +E Y
Sbjct: 26 LFLQADSYALLKLFPADCIDCVITSPPYWGQRAY------------INGGIGLEEKWEDY 73
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTML-QNLNFWILNDIVWR 132
+R+LKP+G+ W+ +R+ + + + N ++W
Sbjct: 74 INNLLGIFCEVKRILKPSGSFWLNLGDTYQRKSLIGIPWRVALAMSDKQGWILRNSVIWN 133
Query: 133 KSNPMPNFRGRRFQNAHETLIWASP 157
K P+ + +N +E +
Sbjct: 134 KVKGAPDNAKDKLRNVYEPVFHFVK 158
>gi|205374887|ref|ZP_03227679.1| DNA methylase N-4/N-6 domain-containing protein [Bacillus
coahuilensis m4-4]
Length = 151
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++KG+ + VL+ + DLI DPPY + NG++ + + +D WD +
Sbjct: 4 LLLKGDCLQVLKDIDNNIADLIIVDPPYGVLTNGKVVKKGNYEIDDY-FEWDMLEDLQ-- 60
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
FT W K + +++ S R+G + N + I
Sbjct: 61 -QFTTEWFEKLYNKAKEDSFIYIFWS-QKYMRMGYEIFNPDRVIFWHY 106
>gi|17228785|ref|NP_485333.1| PvuII DNA methyltransferase [Nostoc sp. PCC 7120]
gi|17130637|dbj|BAB73247.1| PvuII DNA methyltransferase [Nostoc sp. PCC 7120]
Length = 200
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R G K HP + P+ + T GD++LDPF GS T+G VA+ +R +I +E+
Sbjct: 127 RRCKAAGVKPHPARFPQGFAEFFIKFLTDEGDLVLDPFAGSNTTGFVAETWQRRWIAVEI 186
Query: 254 KQDYIDIATKRIAS 267
QDY+ + R +
Sbjct: 187 NQDYVLGSRYRFSE 200
>gi|317014777|gb|ADU82213.1| adenine-specific DNA-methyltransferase [Helicobacter pylori
Gambia94/24]
Length = 655
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ + G + N+ L +KPEALL RIL ST+ D++LD F GSGT+ AVA
Sbjct: 452 NIFTEDFWQG---ISNEGQITLKNGKKPEALLQRILEISTQENDLVLDFFAGSGTTCAVA 508
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
K++R +IGIE I +R+ V ++ G + + L E L
Sbjct: 509 HKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCGFKGGGSFVYAELKEVNLEIK 568
Query: 302 GQIL 305
QIL
Sbjct: 569 KQIL 572
Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 28/204 (13%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
E + +IKGN++ L L K I+ DPPYN + Y +
Sbjct: 162 DENTNYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNYNDN------------ 209
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ ++ F + L A R L +G ++V + + ++ + + + V
Sbjct: 210 --FNHSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIF--LRENFVATI 265
Query: 134 SNPMPNFRG-----RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN----EDVQMRSDW 184
+ + + G N E ++ + S ++ Y + + N Q S
Sbjct: 266 TCKVKSAGGLTTDTEMIFNCSEYILIYAKSFESLTYNSIKISKEIINSQSKTSEQYNSII 325
Query: 185 LIPICSGSERLRNKDGEKLHPTQK 208
E + KD K + K
Sbjct: 326 NNIDYKKKEFICEKDNIKYYKIPK 349
>gi|110633553|ref|YP_673761.1| DNA methylase N-4/N-6 [Mesorhizobium sp. BNC1]
gi|110284537|gb|ABG62596.1| DNA methylase N-4/N-6 [Chelativorans sp. BNC1]
Length = 306
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/274 (17%), Positives = 79/274 (28%), Gaps = 33/274 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ + LPA S+D PP++ D A D + + F +
Sbjct: 16 YCADCVPFTAALPANSIDFSVYSPPFSSLYIYSESVADMGNC-ASDDEFFEQYRFLVREK 74
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL---NDIVWRKSNPMPNF 140
F + + + S + + + D R +
Sbjct: 75 FRATRPGRLTAIHVKDLVYYQNSSERGTAGLRPFSDDCTRLHIEEGWDFHSRITIWRDPV 134
Query: 141 RGRRFQNAHETLI-----------------------WASPSPKAKGYTFNYDALKAANED 177
R + AH L WAS + + T +
Sbjct: 135 REMQKTKAHGLLWKTLRADSTFSRMGLPEYLLVFRKWASDGEEVRPVTHTKETFPVEEWQ 194
Query: 178 VQMRSDWLIPICSGSE------RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
W P E ++ D ++ H P + R L + GD++ PF
Sbjct: 195 QYASPVWNYPRQDLPETDVLNVKVARSDKDEKHLCPMPLNITRRALRMWSNRGDVVYSPF 254
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
G G+ G V+ + R FIG E+ Y A K +
Sbjct: 255 MGIGSEGVVSIEEGRKFIGTELNPAYFRQAIKNL 288
>gi|153951550|ref|YP_001398640.1| modification methylase BslI [Campylobacter jejuni subsp. doylei
269.97]
gi|152938996|gb|ABS43737.1| modification methylase BslI [Campylobacter jejuni subsp. doylei
269.97]
Length = 413
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/302 (16%), Positives = 91/302 (30%), Gaps = 63/302 (20%)
Query: 16 IFEWKDK-IIKGNSISVLEKLPAKSVDLIFADPP---------------YNLQLNGQLYR 59
I + +K II G+ L+K+ ++S+ + PP Y + L
Sbjct: 91 INDKTNKKIIWGDCFKTLKKMKSESIACMVTSPPYYNAREYAKWDNLNTYFADMKKILKE 150
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL----------------------- 96
L + ++ F+ + FT + R L
Sbjct: 151 CYRVLDNHRVFIFNVGDIFDNDNLFTTSTWGKRRLPLGAYFINLFEKVGFTFVDDIIWDK 210
Query: 97 --------KPNGTLWVIGSYHNIFRIGTM---------LQNLNFWILNDIVWRKSNPMPN 139
K + Y + L+ V +
Sbjct: 211 GEVQSQRHKNGDKPYPFYQYPMNCYEHILVFHKHRQDNLRYPCPVCGCLQVNGNAYTEKG 270
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR--- 196
+ +N A+ K + +A N++ Q+ D++ +++
Sbjct: 271 LKSWECKNLDCFERSAANRGKRFSAKTYFTQNEAFNQNSQIDKDFIYVWRRDIKKINPVI 330
Query: 197 NKDGEK----LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ +K H P+ + + + G+ +LDPF G GTS VA +L R IGIE
Sbjct: 331 KINSKKQNFLGHSAPFPKEIPEFAIRMFSYKGEKVLDPFMGIGTSVKVANELGRIGIGIE 390
Query: 253 MK 254
Sbjct: 391 RD 392
>gi|325928939|ref|ZP_08190100.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
gi|325540628|gb|EGD12209.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
Length = 624
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
N M D P+ G R + +K H T KP L+ R++ S + G
Sbjct: 524 NQAEYIVWGSKGNMPLDRRAPVLPGVIRESVRKADKHHLTGKPTELMRRLV-SICEAGGQ 582
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
ILDPF GSGT+ AK + G+E+ Y ++ R A
Sbjct: 583 ILDPFAGSGTTLVAAKLEGYGWTGVEISPHYAEVVRNRFA 622
>gi|163797425|ref|ZP_02191377.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
gi|159177344|gb|EDP61901.1| ParB domain protein nuclease [alpha proteobacterium BAL199]
Length = 437
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/269 (16%), Positives = 81/269 (30%), Gaps = 31/269 (11%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVDLIF--ADPPYNLQLNGQLYRPDHSLVDA-VTDSWDKF 75
+++ G+S + +L + DPPY + +G + + +WD
Sbjct: 176 HRLLCGDSTKPEDVRRLMNGE-RAVLFATDPPYLVDYDGSNHPTRNKDWSHSYGVTWDDS 234
Query: 76 SSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S YD F A + + + + + + ++ I+W K
Sbjct: 235 SQGAELYDGFIA---AAVAAAIAKDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKD 291
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ + HE P E+ + L
Sbjct: 292 RGV--LTRSHYLWKHEPCFMGWRRPNRPPKVA---------EETLASTWPLPSFA----- 335
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
KD HPT KP + G + +PF GSG+ + R +E+
Sbjct: 336 ---KDDRPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVYAMEIS 392
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKR 283
Y+D+A +R G + G +
Sbjct: 393 PAYVDVAIER--WQAETGREAILDGDGGK 419
>gi|218134951|ref|ZP_03463755.1| hypothetical protein BACPEC_02856 [Bacteroides pectinophilus ATCC
43243]
gi|217990336|gb|EEC56347.1| hypothetical protein BACPEC_02856 [Bacteroides pectinophilus ATCC
43243]
Length = 289
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 176 EDVQMRSDWLIPICSGSERLRN--KDGEKLHPT-QKPEALLSRILVSSTKPGDIILDPFF 232
+ + D + ++N K+G+ P +KPE LL +I+ +T GD++LD F
Sbjct: 53 DGKLYKKDLQGTYWDMNAWMKNLTKEGDVTFPNGKKPEKLLKQIIEMTTLEGDMVLDSFL 112
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GSGT+ A A KL R +IGIEM R+ +
Sbjct: 113 GSGTTAATAHKLNRRWIGIEMGNQAYSHCKVRLDN 147
>gi|15341563|gb|AAK95340.1| truncated type III restriction-modification system
methyltransferase [Moraxella catarrhalis]
Length = 331
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 21/198 (10%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L + LI+ DPPY +P+ +
Sbjct: 68 NLLIKGNNLLALHSLKERLSGKIKLIYIDPPYY----FNKKKPNDTFNYNSNFK------ 117
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
++ F + L + L G +++ + + ++ + D +
Sbjct: 118 LSSWLIFMKNRLEVAKEFLSDTGVIFISIDDDGLAYLKVLMDEIFGI---DNFIANLPTI 174
Query: 138 PNFRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS 192
N +G + A TL++A K+ Y F D + + Q +
Sbjct: 175 MNLKGNNDEYAFAGTHEYTLVYAKDKEKSVFYEFPVDEDELLKDWEQDEIGLYKQGANLK 234
Query: 193 ERLRNKDGEKLHPTQKPE 210
N EK P
Sbjct: 235 STGVNAPREKRPNLFFPV 252
>gi|19552128|ref|NP_600130.1| adenine specific DNA methylase Mod [Corynebacterium glutamicum ATCC
13032]
gi|62389793|ref|YP_225195.1| restriction-modification system: methylase [Corynebacterium
glutamicum ATCC 13032]
gi|41325128|emb|CAF19609.1| PUTATIVE RESTRICTION-MODIFICATION SYSTEM: METHYLASE
[Corynebacterium glutamicum ATCC 13032]
Length = 385
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ + LE L S+D I+ DPPYN Y D A D +
Sbjct: 140 HTVVNAENYHALEMLTYTHRHSIDAIYIDPPYNTGARDWKYDND---YVASDDDYR---- 192
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ AF L CR +++ + TL H + R+G +L L +V +NP
Sbjct: 193 HSKWLAFMERRLKICRELMRSDATLVATIDEHEVNRLGVLLDQLFPESTRQLVTIVNNPK 252
Query: 138 PNFRG 142
+G
Sbjct: 253 GVTQG 257
>gi|208434206|ref|YP_002265872.1| type III adenine methyltransferase [Helicobacter pylori G27]
gi|208432135|gb|ACI27006.1| type III adenine methyltransferase [Helicobacter pylori G27]
Length = 384
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
++ L+++ +S+ I+ DPPYN + + Y + Y+ + +
Sbjct: 3 ALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DNHADYEKWIKE 46
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + VLK +G +++ + + + ++ N F N + + +
Sbjct: 47 HLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATRSNAKHINI 105
Query: 148 AHETLIWASPS 158
HE ++ + +
Sbjct: 106 THEYVLSYAKN 116
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 43/125 (34%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+ + + + R + + + + Y+ S
Sbjct: 200 PRGVAIQEINLFLEPLKSRGWSSDEKLKELYHQNRLIFKNNRPYEKYYLKESQDNCLSVL 259
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
G++ L + L T KP AL+ +L+ ST IILD F GSGT+ ++
Sbjct: 260 DFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEV 319
Query: 245 RRSFI 249
+ +
Sbjct: 320 NKDYY 324
>gi|71901477|ref|ZP_00683565.1| DNA methylase [Xylella fastidiosa Ann-1]
gi|71728777|gb|EAO30920.1| DNA methylase [Xylella fastidiosa Ann-1]
Length = 100
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQL---------NGQLYRPDHSLVDAVTDSWDK 74
+G+++ +L + + SVD + DPPY + Y + + A D
Sbjct: 12 HEGDALRLLCDIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDCD- 70
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
F + A++ WL CRRV +P G L+V
Sbjct: 71 FRDHRGFLAWSSQWLSECRRVTRPGGVLYV 100
>gi|300866569|ref|ZP_07111258.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
gi|300335433|emb|CBN56418.1| DNA methylase N-4/N-6 domain protein [Oscillatoria sp. PCC 6506]
Length = 362
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
LH + PE L ++++ I+LDPF G+GT+ VA +L R IGI++ +Y+ +
Sbjct: 294 RTLHFSPYPEDLCKIPILATCPQAGIVLDPFAGTGTTNQVAFQLGRRSIGIDISGEYLTV 353
Query: 261 ATKRIA 266
A +R +
Sbjct: 354 ARERCS 359
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++G + ++L++ P S+D + PPY +R + + D W + Y
Sbjct: 33 LFLQGETYALLKQFPPNSIDCVITSPPYW------GHRVYINGGIGLEDKW------QEY 80
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHN--------IFRIGTMLQNLNFWI-LNDIVWR 132
+R++KP G+ W+ +R+ + + WI N ++W
Sbjct: 81 VKNLLEIFDEVKRIIKPTGSFWLNIGDAYQQKSMVGLPWRVALAMIDQQNWILRNSVIWN 140
Query: 133 KSNPMPNFRGRRFQNAHETLIWASP 157
K P+ + +N +E +
Sbjct: 141 KVKGNPDNAKDKLRNIYEHVFHFVK 165
>gi|307354431|ref|YP_003895482.1| DNA methylase N-4/N-6 domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157664|gb|ADN37044.1| DNA methylase N-4/N-6 domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 419
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 54/314 (17%), Positives = 87/314 (27%), Gaps = 112/314 (35%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K +I + I L+KLP +SV + PPY + + + E
Sbjct: 2 KHTLINADVIKGLQKLPVQSVHTVVTSPPYWSLRDY-----------GIEGQIGLEETPE 50
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYH------------------------------ 109
A+ RRVL+ +GTLW+
Sbjct: 51 AHIQKIVEVFREVRRVLRDDGTLWLNYGDCYTSGNKTGHGSKIGWKQQTNRGSDGLRDAP 110
Query: 110 ---------------NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
+RI LQ +++ DIVW K NPMP R +HE +
Sbjct: 111 RLPMPAGLKNKDLVGMPWRIALALQEDGWYLRCDIVWNKPNPMPESVNDRPTRSHEYIFL 170
Query: 155 ASPSPK----------------AKGYTFNYDALKAANEDVQMRSD-WLIPICSGS----- 192
+ SP+ + D K AN +++++ C GS
Sbjct: 171 MTKSPQYFYDAEAIRENVSGGAHHRGDYKGDLPKTANPGKRIKNNSSFTKACWGSSDPRV 230
Query: 193 --------------------------------ERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ + H P+ L R +++
Sbjct: 231 SSSSRNLQGHSGNLNSEGKPLCDKFSRNARSVWTIPTQPRPDAHFATFPDELARRCILAG 290
Query: 221 TKPGDIILDPFFGS 234
T P G+
Sbjct: 291 TSEYGCC--PHCGT 302
Score = 43.1 bits (100), Expect = 0.076, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+LDPF GSGT +A++ RS I IE+ Y+++ +R+ + + L
Sbjct: 363 TVLDPFGGSGTVADIAREQNRSSILIEINPSYVEMQKQRLRADEQLD 409
>gi|261345409|ref|ZP_05973053.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
4541]
gi|282566453|gb|EFB71988.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
4541]
Length = 350
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAY 81
++ +S+S ++ LP +DLI DPPY T SWD ++ + AY
Sbjct: 12 LVNEDSLSYIKTLPDNCIDLIATDPPY---------------FQVKTCSWDNQWENVTAY 56
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS 107
++ L RVLKPNG+L++
Sbjct: 57 LSWLDDMLAEFWRVLKPNGSLYMFCG 82
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP ++ I+ SST+ GD++ D F GSG + A KL R IG+E++ + +
Sbjct: 282 HPCEKPAVMMEHIINSSTREGDVVADFFMGSGATVKAALKLNRRVIGVELETERFEQTVL 341
Query: 264 RIASVQ 269
I V
Sbjct: 342 EINEVN 347
>gi|78045442|ref|YP_361692.1| putative site-specific DNA-methyltransferase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78033946|emb|CAJ19945.1| putative site-specific DNA-methyltransferase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 407
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/278 (16%), Positives = 86/278 (30%), Gaps = 41/278 (14%)
Query: 36 PAKSVDLIFADPPYNLQLNGQLYRP---------------------DHSLVDAVTDSWDK 74
+ + L PPY L+ P D + A+ S D
Sbjct: 130 LDEKIVLCLTSPPYPLRKPRAYGNPPIHLYVDFIVKALEPIVRNLADGGSI-ALNLSNDI 188
Query: 75 FS----SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
F S E Y L R+ K + +W S + + + +
Sbjct: 189 FEAGLPSRELYLERLTLALCDTYRLHKMDTLIWSNPSKPPGPVRWASMTRQQLNVSWEPI 248
Query: 131 WRKSNPMPNFRGRR------FQNAHETLIWASPSPKAKG-----YTFNYDALKAANEDVQ 179
+N N + H+ L+ + Y + + +
Sbjct: 249 LWLTNNPRNCVSDNRRILEPHSDRHQRLMARGGEHREAVNSDGAYRIHQGSYGRPTDGRI 308
Query: 180 MRSDWLIPICSGSERLRN----KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
R+ + + N + G H P AL +++ ++P D++ DPF G
Sbjct: 309 ARNVLMHGHRCAEAQACNHFAAEQGLAPHGAPMPLALADKLVRFLSRPDDLVADPFGGRL 368
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
T+G A++ R +I E+ D++ A R P +
Sbjct: 369 TTGKAAEQNGRRWICTELIADHLHSALPRFPQAVPGPS 406
>gi|312864539|ref|ZP_07724770.1| conserved hypothetical protein [Streptococcus downei F0415]
gi|311099666|gb|EFQ57879.1| conserved hypothetical protein [Streptococcus downei F0415]
Length = 234
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 29/149 (19%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ + + IIKGN++ L L V LI+ D PYN +
Sbjct: 107 EELKDTDNLIIKGNNLIALHSLKKRFAGKVKLIYIDVPYNTGSDSF-------------- 152
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
+ + F + L+ R +L G ++V + + +G +L + +
Sbjct: 153 ------NHSTWLTFMKNRLMVARELLSKEGVIFVHLDDNEVKYLGVLLDEIFG---RENF 203
Query: 131 WRKSNPMPNFRGRRF---QNAHETLIWAS 156
+ N RGR + N HE AS
Sbjct: 204 IELVTVVNNPRGRDYGGIANMHEFTRGAS 232
>gi|322691068|ref|YP_004220638.1| phage DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
gi|320455924|dbj|BAJ66546.1| putative phage DNA methylase [Bifidobacterium longum subsp. longum
JCM 1217]
Length = 407
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
+ G T + + +G DG + HPT KP L+
Sbjct: 290 TKPGDGWGMTHTGAEYDDMGGASRFYPVFRYCPKAGPGERPTVDGIR-HPTVKPLELMRW 348
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
++ T P ++L+PF GSG + + + EM DY+ + +R+A
Sbjct: 349 LVRLVTPPDGLVLEPFAGSGATLEACRVENMRCVAAEMDSDYVRLIARRMAR 400
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 22/128 (17%)
Query: 17 FEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
W D +++ G+ ++ LP SV + DPPY + + D +
Sbjct: 1 MRWDDGRIRLMPGDCRDLIAMLPDNSVASVVTDPPYEIGFMNLGFDSTGIAFDVI----- 55
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
W RVLKP G + G+ R+ +++ F I + I W
Sbjct: 56 -------------LW-KDILRVLKPGGHVAAFGASRTYHRLACAIEDAGFEIRDQIDWVY 101
Query: 134 SNPMPNFR 141
++ MP+
Sbjct: 102 ASGMPHGS 109
>gi|15828869|ref|NP_326229.1| type III restriction-modification system: methylase [Mycoplasma
pulmonis UAB CTIP]
gi|14089812|emb|CAC13571.1| TYPE III RESTRICTION-MODIFICATION SYSTEM: METHYLASE [Mycoplasma
pulmonis]
Length = 652
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
QKPE L+ RI+ T+ D++LD GSGT+ AVA K+ R +IGIE DI +R
Sbjct: 457 SGQKPEKLIERIIKLGTEKNDLVLDFHLGSGTTTAVAHKMGRKYIGIEQMDYIQDITIER 516
Query: 265 IAS 267
+
Sbjct: 517 MKK 519
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
E E + IIKGN++ L L + V LI+ DPPY + +
Sbjct: 129 EENIEFNENDNLIIKGNNLIALSSLLERYEEKVKLIYIDPPYYFE----------DKKEE 178
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
T ++ + +F + L + +L+ +G ++V S + ++
Sbjct: 179 NTFLYNSNFKLSTWLSFMKNRLEITKMLLREDGFIFVQISDDGFAYLKVIM 229
>gi|157149549|ref|YP_001451567.1| putative DNA methylase [Escherichia coli E24377A]
gi|157076716|gb|ABV16425.1| putative DNA methylase [Escherichia coli E24377A]
Length = 261
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 15/102 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
D + + RVLK + + ++ + R + +N F
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGF 89
>gi|329121578|ref|ZP_08250199.1| methyltransferase [Dialister micraerophilus DSM 19965]
gi|327468733|gb|EGF14210.1| methyltransferase [Dialister micraerophilus DSM 19965]
Length = 380
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLR---NKDGEKLH-PTQKPEALLSRILV 218
GY NED ++ G E+ NK+G K QKPE L+ IL+
Sbjct: 148 GYERMEPLSWKFNEDKELTILRGDFWDVGYEKDMGNINKEGIKGFGEGQKPERLIKDILL 207
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
SSTK DI+LD GSGT+ AVA K+ R +IGIE DI +R+ V ++
Sbjct: 208 SSTKENDIVLDFNLGSGTTAAVAHKMGRRYIGIEQMDYIKDITVERLKKVIEGEQGGIS- 266
Query: 279 LTGKRTEPRVAFNLLVERGLIQPGQIL 305
+ V L++ Q L
Sbjct: 267 ----KAVNWQGGGSFVYCELLEDAQYL 289
>gi|239627885|ref|ZP_04670916.1| DNA methylase [Clostridiales bacterium 1_7_47_FAA]
gi|239518031|gb|EEQ57897.1| DNA methylase [Clostridiales bacterium 1_7_47FAA]
Length = 60
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
++ +ST+PGDI+LDPF GSGT+ +L R +IG E+ + Y ++A KRI
Sbjct: 2 LIENSTRPGDIVLDPFIGSGTTAVACIELGRQYIGYEINEGYFEVAQKRIQDT 54
>gi|315653150|ref|ZP_07906075.1| type III restriction-modification system: methylase [Lactobacillus
iners ATCC 55195]
gi|315489515|gb|EFU79152.1| type III restriction-modification system: methylase [Lactobacillus
iners ATCC 55195]
Length = 654
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 14/173 (8%)
Query: 17 FEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ + IIKGN++ L L V I+ DPPY + + + ++
Sbjct: 185 KDDDNLIIKGNNLIALVSLLKRYEGKVKCIYIDPPYYF----------NKTIGEDSFKYN 234
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWR 132
+ F + L ++L +G++W+ + + + + + R
Sbjct: 235 SNFKMSTWLTFMKNRLELANKLLSSHGSIWIHMGEDGMHYLKVLADDVFGKEHFVGTIPR 294
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
K+ + + ++ + + ++ K D + W
Sbjct: 295 KTRDGKSDVPFNLSQDFDWILVYTKANESDVIVGRQVERKYYETDDFLGKPWR 347
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
G+ + + KPE L+ IL T P D++LD GSGT+ AVA K+ R +IG
Sbjct: 454 GNNEITDLFSRDEFDYAKPEELIKAILKIVTNPSDLVLDFHLGSGTTAAVAHKMGRRYIG 513
Query: 251 IEMKQDYIDIATKRIAS 267
+E DI +R+
Sbjct: 514 VEQMDYIQDITVERLKK 530
>gi|294788718|ref|ZP_06753959.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
29453]
gi|294483200|gb|EFG30886.1| DNA (cytosine-5-)-methyltransferase [Simonsiella muelleri ATCC
29453]
Length = 387
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+K+ ++ L +LP + ++ DPPYN Q S D +D
Sbjct: 1 MNKLYVMDAEDCLNRLPENTFQTVYIDPPYNTQ----------SKKFEYHDHYD------ 44
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
++ F + + R+V++ G L+V + + + + N F N + +
Sbjct: 45 DWEDFITSKIRKTRQVMQETGVLFVSIDDNKLIELRLI-CNEVFGKDNFLGMFITRQTTR 103
Query: 140 FRGRRFQNAHETLIWASPS 158
+ HE +I + +
Sbjct: 104 SNAKHINTIHEYIIAYAKN 122
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 7/150 (4%)
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
T L N + +P + R + + + + + + Y+
Sbjct: 196 FATDLSTPNGEPCELYIEEIMLHLPALKSRGWSSKEKFIKLFNENKLLFKQGRPYEKHLL 255
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFF 232
+ S G L D + T KP ++ ++ S D ILD F
Sbjct: 256 SESKDNAMSILNFYSRQGKHDLERLDLGNVFSTAKPVEMIKYLIKISQISHNDKILDFFA 315
Query: 233 GSGTSGAVAKKLR------RSFIGIEMKQD 256
GSGT+ + R F+ +++++
Sbjct: 316 GSGTTAQAVLECNQEDNGQREFVLCQVQEE 345
>gi|153869324|ref|ZP_01998964.1| DNA modification methylase [Beggiatoa sp. PS]
gi|152074154|gb|EDN71040.1| DNA modification methylase [Beggiatoa sp. PS]
Length = 115
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ R++++S+ GD ILDPFFGSGT+ V ++L R IG EM +YI++ R+
Sbjct: 1 MERMILASSNEGDTILDPFFGSGTTLRVCQQLNRKCIGFEMNPEYIELTKNRL 53
>gi|296531909|ref|ZP_06894712.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
gi|296267775|gb|EFH13597.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
Length = 599
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+K++ Q ++ R ++ +T PGD++LDP GSGT+ VA++ R +I + + + +
Sbjct: 84 DKVYVVQTATKIIQRCMLMTTDPGDLVLDPTCGSGTTAFVAEQWGRRWITTDTSRVALAL 143
Query: 261 ATKRI 265
A R+
Sbjct: 144 ARTRL 148
>gi|260469736|ref|ZP_05813895.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
WSM2075]
gi|259028468|gb|EEW29785.1| DNA methylase N-4/N-6 domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 347
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 84/301 (27%), Gaps = 67/301 (22%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I +G+S ++ +P SV PP+ D S + +F +
Sbjct: 20 IYQGDSCELIRAVPGDSVHFGVHSPPFEGLYKFSGSDRDLSNSEG--------KTFWQHY 71
Query: 83 AFTRAWLLACRRVLKPNGTLWV--------------IGSYHNIFRIGTMLQNLNFWILND 128
F + R+ P V IG + Q+ + ++
Sbjct: 72 QFL---ISEMLRITMPGRIQAVHVMQLPTSKRRDGFIGMRDFRGEVIRAWQDAGWQFHSE 128
Query: 129 IVWRKSNPMPNFRGRRFQNAH---------------ETLIWASPSPKAKGYT-------- 165
+ K + R + + H + ++
Sbjct: 129 VCIWKDAVVAQARSKSHRLNHKQVVKDSTISGQALADYIVAFRKPGDNPEPVSGALKRYV 188
Query: 166 -----FNYDALKAANEDVQMRSDWLIPI-----CSGSERLRN-------KDGEKLHPTQK 208
++ N+ S + + R ++ H +
Sbjct: 189 GEGEGPDFQKFTTDNDSRNWFSIEVWQRYASPVWMDIRQTRTLQYLTARDGNDEAHISPL 248
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
++ R + + PGDI+ PF G G+ A + R +G E+K Y A RI
Sbjct: 249 QLDVIDRCIDLWSNPGDIVFTPFLGIGSEVWAAVQSGRRGLGFELKDKYFRQA--RINMT 306
Query: 269 Q 269
+
Sbjct: 307 R 307
>gi|322368971|ref|ZP_08043538.1| DNA methylase N-4/N-6 domain-containing protein [Haladaptatus
paucihalophilus DX253]
gi|320551702|gb|EFW93349.1| DNA methylase N-4/N-6 domain-containing protein [Haladaptatus
paucihalophilus DX253]
Length = 143
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
++ +R + +++ S GY +N +A E V+ R +
Sbjct: 18 DEYTFRMDRVRIPYNSHTKEHSMREQGQTSLFGNETGYEWNPNA-----EGVKPRDVIDV 72
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ + + HPTQKPE L +I+ +++ D++LD F GSGT+ AVA++ R
Sbjct: 73 LTVNNA-----SNERADHPTQKPEEHLRKIVWATSDKDDLVLDSFGGSGTTYAVAEQFGR 127
Query: 247 SFIGIEMK 254
+++G E
Sbjct: 128 NWVGTENS 135
>gi|301321463|gb|ADK70106.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 493
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 22 KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
KI +S ++E+ S V+ I DPPYN+ + + + + WD
Sbjct: 338 KIYNADSYKIVEQFINNSTKVNHIITDPPYNISQSNNFHTLRSANRQGLNFGKWD----- 392
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
YD +W+ ++L NG++ + SY I I L++ I + I W K+NPMP
Sbjct: 393 --YDFDLISWIKPYSKLLDKNGSMIIFCSYKYISFIIEELESNMLEIKDVIKWVKTNPMP 450
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFN 167
RR+ E IWA +++ +
Sbjct: 451 RNVNRRYVQDTEYAIWAVKKNQSECLINH 479
>gi|127512192|ref|YP_001093389.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella loihica
PV-4]
gi|126637487|gb|ABO23130.1| DNA methylase N-4/N-6 domain protein [Shewanella loihica PV-4]
Length = 719
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 11/137 (8%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G + VL+ L +D I+ DPPYN Y D+ D
Sbjct: 138 HSVINGENYHVLKALTYTHRGKIDAIYIDPPYNSGAKDWKYNNDYV-------EGDDLYR 190
Query: 78 FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ A L + +L P + L V R+G +L+ + +V NP
Sbjct: 191 HSKWLAMMERRLFVAKELLNPADSVLIVTIDEKEYLRLGLLLEQVFPEAKIQMVSSVINP 250
Query: 137 MPNFRGRRFQNAHETLI 153
R +F E +
Sbjct: 251 FGVARAGQFARVDEYIF 267
>gi|227833136|ref|YP_002834843.1| adenine-specific DNA-methyltransferase [Corynebacterium aurimucosum
ATCC 700975]
gi|227454152|gb|ACP32905.1| adenine-specific DNA-methyltransferase [Corynebacterium aurimucosum
ATCC 700975]
Length = 431
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 5/148 (3%)
Query: 27 NSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
++++ L A+ D+I+ DPPYN + D ++ + ++ + +
Sbjct: 74 DNLAALNDFIARGLRADVIYIDPPYNTGKDFVYRDNFRQRRDMRSEHFGQW--HAEWLSM 131
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGR 143
L+ R VL G + V + +L + K +
Sbjct: 132 MLPRLILAREVLADTGFILVSIGESECAHLRLILNEVFGEDCFAGQLIWKKGGTGKNDSK 191
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDAL 171
HE ++ + S G+ + +A
Sbjct: 192 YAVLEHEYVLCYAKSSANNGFNVDMEAQ 219
Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ KP L+ ++ + P +++D F GSGT+ +L R
Sbjct: 336 VFDFPKPVRLIKHLISIAGGPDAVVVDFFAGSGTTAQAVVELNR 379
>gi|217962618|ref|YP_002341190.1| DNA methylase domain protein [Bacillus cereus AH187]
gi|217065650|gb|ACJ79900.1| DNA methylase domain protein [Bacillus cereus AH187]
Length = 643
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 12/162 (7%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++G+++ +L K VD+++ DPPYN Y D + D +
Sbjct: 88 MNFLLEGDNLASLELLSKTHKGLVDVVYIDPPYNTGNTDFTYDDD------YVEKEDAYK 141
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ +F + L V+ +G L++ + +L + F N IV
Sbjct: 142 -HSKWLSFMKRRLELAHEVMSNDGILFMSIDDKEQAALK-ILTDEIFGEDNFIVALPRQT 199
Query: 137 MPNFRGR-RFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
+ + F H+ ++ + K + ED
Sbjct: 200 KKSGKTTGSFSKNHDYVLVYTKLNKDVFVMEEHIDDNYKYED 241
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 20/231 (8%)
Query: 56 QLYRPDHSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF-- 112
+ + D+ D D K+ + D + ++ + L+ +G ++ G
Sbjct: 230 EEHIDDNYKYEDEFVDERGKYKLNQTLDYDSLSYSKSLDYPLEIDGEIFYPGGSKEKHLE 289
Query: 113 -----RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + + + + + K K
Sbjct: 290 RQSGKHKRADWAWRWNKEMFKYGYENGFVVIKRKKDGTARIYTKTYLNAKIEKRKSKGMT 349
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNK----DGEKLHPTQKPEALLSRILVSSTKP 223
+K ++ + S L ++ + + + KP L+ R++ P
Sbjct: 350 EYFIKYVHKTKPLSSIELTLNKYSNDNAKKDLSVFNLQDEFDYSKPVDLIKRLISCHYNP 409
Query: 224 GDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRIA 266
+LD F GSGT+G + R FI Q+ I +I KR++
Sbjct: 410 DAYVLDFFAGSGTTGQAILELNKERGGNRKFILCTNNQNNICREITYKRVS 460
>gi|145636496|ref|ZP_01792164.1| type III restriction-modification system methyltransferase-like
protein [Haemophilus influenzae PittHH]
gi|145270321|gb|EDK10256.1| type III restriction-modification system methyltransferase-like
protein [Haemophilus influenzae PittHH]
Length = 231
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 178 VQMRSDWLIPICSGS--ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
S + + +N+ G +KPEALL RI+ +T+ GDI+LD GSG
Sbjct: 6 KYYWSILVCDFWEDIDFQNTQNEGGISFPTGKKPEALLHRIIDMTTQKGDIVLDYHLGSG 65
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
T+ AVA K+ R +IGIE +A +R+
Sbjct: 66 TTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 97
>gi|257790559|ref|YP_003181165.1| DNA methylase N-4/N-6 domain-containing protein [Eggerthella lenta
DSM 2243]
gi|257474456|gb|ACV54776.1| DNA methylase N-4/N-6 domain protein [Eggerthella lenta DSM 2243]
Length = 586
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/226 (17%), Positives = 71/226 (31%), Gaps = 21/226 (9%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQL------N 54
K + ++ I+G+++ L+ L V LIF DPPYN +
Sbjct: 81 KTMIPEPGKSKDWDTTENLYIEGDNLDALKILKETYAGKVKLIFIDPPYNTGHDFVYKDD 140
Query: 55 GQLYRPDHSLVDA-VTDSWDKFSSFEAYDAFTRAWLLACRR-------VLKPNGTLWVIG 106
L ++ +DA V++ ++ + F W +L +G L+V
Sbjct: 141 YSLSGAEYKNIDADVSEMGMLVANHDTEGRFHSNWCTMLYPRLLLARDLLAADGVLFVCI 200
Query: 107 SYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK---AK 162
+ + ML V + + P F H ++ S + A
Sbjct: 201 DDNEFANLEKMLDEIFGSSNRVANVIWQHSVQPKGYLSGFSIHHNEVLIYQKSSEFELAP 260
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK 208
D +N D W + N + + P+ K
Sbjct: 261 LPRTAEDNKAYSNPDDDPNGPWRSGDVRNALYRPNLIYDIVSPSGK 306
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 37/151 (24%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RS 247
+++ + T KP ++ R L ++ D F GS T+ + R
Sbjct: 372 EIKSLFETSVFDTPKPVGVVERALSLVKGNNYLVFDFFAGSSTTAEAVMRKNAKDGGSRM 431
Query: 248 FIGIEMKQDY--------------IDIATKRI-----ASVQPLGNIELTVLTGKRTEPRV 288
I +++ + ++ +RI + + + G +P
Sbjct: 432 CISVQLDAECELNSVASRSGFKTICNLGEERIRRAGDKIAADIDKENMQLELGAEPKPYP 491
Query: 289 AFNLLV--------ERGLIQPGQI----LTN 307
V + + PG+ L +
Sbjct: 492 DLGFRVLRIDYSNFKDFYLTPGETAQESLFD 522
>gi|270118178|ref|YP_003329506.1| methyltransferase, type III restriction-modification system,
truncated [Lactococcus lactis]
gi|76574870|gb|ABA47341.1| methyltransferase, type III restriction-modification system,
truncated [Lactococcus lactis]
Length = 183
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +++G+++ L L +D+I+ DPPYN +Y D D +
Sbjct: 92 NFLLEGDNLHSLHLLEKTHLGKIDIIYIDPPYNTGNKDFVYNDD---FVGKDDEFK---- 144
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ +F L+ +++L PNG ++V
Sbjct: 145 HSKWLSFMERRLIIAKKLLSPNGVIFVSID 174
>gi|265753968|ref|ZP_06089323.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
sp. 3_1_33FAA]
gi|263235682|gb|EEZ21206.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
sp. 3_1_33FAA]
Length = 158
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
+ N +E+ R + +E +G+ +H QKP ALL
Sbjct: 46 TKRGSNWTGINNVPNPTFRHENKGTRYPRSVIYFKTAE----SEGKTIHVNQKPIALLEY 101
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
++ + TK GD +LD GS ++ R I IE + Y KR+ +
Sbjct: 102 LIKTYTKEGDTVLDFASGSMSTAIACIYTNRKCICIEKDETYFSQGEKRVRNE 154
>gi|298736794|ref|YP_003729324.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
gi|298355988|emb|CBI66860.1| site-specific DNA-methyltransferase (adenine-specific)
[Helicobacter pylori B8]
Length = 384
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
++ L+++ +S+ I+ DPPYN + + Y Y+ + +
Sbjct: 3 ALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DDHADYEKWIKE 46
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + VLK +G +++ + + + ++ N F N + + +
Sbjct: 47 HLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTHNFLGTFITKQATRSNAKHINI 105
Query: 148 AHETLIWASPS 158
HE ++ + +
Sbjct: 106 THEYVLSYAKN 116
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 254 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 313
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 314 QAVIEVNKDYC 324
>gi|150021564|ref|YP_001306918.1| DNA methylase N-4/N-6 domain-containing protein [Thermosipho
melanesiensis BI429]
gi|149794085|gb|ABR31533.1| DNA methylase N-4/N-6 domain protein [Thermosipho melanesiensis
BI429]
Length = 846
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 14/228 (6%)
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH------NIFRIGTM 117
V + D + + D F L +++ K G W IF +
Sbjct: 502 KVKKFNTATDSLYFYSSSDNFFFRLL--FKKLFKTKGERWHAMDSQGNGNALYIFGVLLE 559
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED 177
W +K R + + + + G +
Sbjct: 560 PPKGRHWTYGQENIKKMEKEKRIRIKCKKCGYNHIEGVWKGCPQCGNKNDVKVEYLLPPT 619
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + D SG T+ E LL R++ S++ GD+ILD F GSGT+
Sbjct: 620 SEKQIDSNWTDISG------YTSNWNFSTENSEILLKRVIESTSNEGDLILDFFLGSGTT 673
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
AVA KL+R +IG+EM + + + R+ V ++ + +
Sbjct: 674 TAVAHKLKRKWIGVEMGEHFWTVVLPRMKKVLFYDKSGISKEKDVKEK 721
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 17/138 (12%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+IK + L + + V I+ DPP+N + D
Sbjct: 393 LIKSENYQALNTILPKFREKVQTIYIDPPFNKEQEADYLYK-----VGYKD--------A 439
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMP 138
+ + R +L G+++V Y+ + +L + +
Sbjct: 440 TWITMLENRVKLGREILNEKGSIFVRCDYNGNMYVRMILNKIFGGDNFRNEINVSRISKQ 499
Query: 139 NFRGRRFQNAHETLIWAS 156
+ + ++F A ++L + S
Sbjct: 500 DRKVKKFNTATDSLYFYS 517
>gi|73661337|ref|YP_300118.1| DNA modification methylase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72493852|dbj|BAE17173.1| putative DNA modification methylase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 259
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
++S +R + HP + PE L + ++ +K +++ DPF G G++
Sbjct: 12 WVKSTKSWFTLQSRQRYKTIK----HPGKFPEELAEKFILFFSKKNEVVFDPFMGVGSTA 67
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+++ R F GIE++ +I +A R+ +
Sbjct: 68 VASEENNREFKGIELESSFISMANSRLEN 96
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 47/169 (27%), Gaps = 25/169 (14%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-----------NLQLNGQLYRPDH 62
NS E + II+G+S + D I PPY N Q ++ +
Sbjct: 91 NSRLENNNNIIEGDSRYA-KYYKDIEADFIITSPPYWNMLGKSRGNSNSQHKDRIQKNLD 149
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK-------------PNGTLWVIGSYH 109
+ ++ + + + C +VLK + +V ++
Sbjct: 150 LVYSDSSNDLGNIDDYSTFMKNLQKVFKNCNKVLKSRKYMVIVVQNFRDSNGEYVTFAWD 209
Query: 110 NIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
++ + + +K N H + +
Sbjct: 210 SVKYVEREGFTFVGEQIWCQDNKKLGIWGFPSTFISNNHHHYCLVFRKN 258
>gi|295400607|ref|ZP_06810585.1| DNA methylase N-4/N-6 domain protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|294977510|gb|EFG53110.1| DNA methylase N-4/N-6 domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 665
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 18/150 (12%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ + IIKGN++ L + SV I+ DPPYN + + Y
Sbjct: 166 EWSDKDNLIIKGNNLMALHSIKNRFAGSVKFIYIDPPYNKEDDSFQYN------------ 213
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIV 130
DKF + + F + L + +L+ +G + + + ++ L+ I
Sbjct: 214 -DKF-NHSTWLTFMKNRLEVAKELLRDDGVIAIQIDNKEFAYLKILMDEIFGENELSTIT 271
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ + + + E ++ + K
Sbjct: 272 VKVKDTAGTGQDSYLFDVCEYILLYAKDKK 301
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ L + G + +KPE L+++++ +T DI+LD F GSGT+ AVA K++R
Sbjct: 448 WEFPNAGLHLEGGVQFTNGKKPEKLIAKLIELTTNENDIVLDFFLGSGTTAAVAHKMKRR 507
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELT 277
+IGIE + + R+ V + ++
Sbjct: 508 YIGIEQLDYGKNDSVTRLQHVIQGDSTGIS 537
>gi|109946647|ref|YP_663875.1| type III restriction-modification system methylation subunit
fragment 1 [Helicobacter acinonychis str. Sheeba]
gi|109713868|emb|CAJ98876.1| type III restriction-modification system methylation subunit
fragment 1 [Helicobacter acinonychis str. Sheeba]
Length = 463
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 21/176 (11%)
Query: 15 SIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDA---- 67
+ K +IKG+++ L+ L ++ + +I+ DPPYN + + +Y D S +
Sbjct: 84 NESNSKHILIKGDNLDALKILRQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEELLK 143
Query: 68 ----------VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
++ + +F LL + +LK +G +++ + ++ +
Sbjct: 144 QLDYSKEKLDYINNLFGSKCHSGWLSFMYPRLLLAKDLLKKDGVIFISIDDNEAAQLKLL 203
Query: 118 LQ-NLNFWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWASPSPKAKGYTFNYD 169
S P+ + E + N
Sbjct: 204 CDEIFGEGNFVAQFIWHSKNKPSGNTTEDKTIDTRTEYIFCYQKCNFKANKHENTK 259
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
P+GT + N I W + N F+ +
Sbjct: 307 PDGTWF-----KNHQNIKKEKSYCYTWSKKLFDFGNQNGFIEFQKT----SDGFWCAYRK 357
Query: 158 SPKAKGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNK-DGEKLHPTQKPEALLSR 215
+ + + + G+ +RN +GEK+ KP L++R
Sbjct: 358 MYELCAIDNKNYKIIYRKSGNAYSNLITNLYSDIGANEVRNIFNGEKIFSYPKPLKLINR 417
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
++ ST GDIILD F GSGT+ +
Sbjct: 418 LIELSTNEGDIILDFFAGSGTTAHAVLESN 447
>gi|148257835|ref|YP_001242420.1| adenine-specific DNA-methyltransferase [Bradyrhizobium sp. BTAi1]
gi|146410008|gb|ABQ38514.1| Site-specific DNA-methyltransferase (adenine-specific)
[Bradyrhizobium sp. BTAi1]
Length = 396
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP ++ ++ + PG +LDPF GSGT+G A R I +E+ + + D
Sbjct: 298 HPTVKPLDVMQWLVRLVSMPGQTVLDPFAGSGTTGEAALAEGRRSILVELDKQFQDDIAD 357
Query: 264 RIASVQPLGNIELTVLTGKR 283
R+ + + L +
Sbjct: 358 RMRTALAGPDERKRQLIKAK 377
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 6/112 (5%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ ++VL LP S+D DPPY L + + S V ++F
Sbjct: 11 TLHRGDMLAVLPSLPEASIDACVCDPPYVLPKVAARFGKEDSAVAQGRVYQGALANFVGK 70
Query: 82 ------DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
A RVLKP + + +N + L F +
Sbjct: 71 PAIVGDVAHKAETWREVYRVLKPGAWVVAFSAANNFGGLQNALVAAGFEVRE 122
>gi|225352313|ref|ZP_03743336.1| hypothetical protein BIFPSEUDO_03929 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157560|gb|EEG70899.1| hypothetical protein BIFPSEUDO_03929 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 174
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPD 61
+ +I G+++ L+ L VD I+ DPPYN +L D
Sbjct: 36 NMVIHGDNLEALKALLPEYEGKVDCIYIDPPYNTGNVDELKDVD 79
>gi|324015253|gb|EGB84472.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
Length = 148
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 41/186 (22%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
GN I V+ ++P ++D I DPPY + D + + + D +
Sbjct: 1 LGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKTDEW 45
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
+ RVLK + + ++ + R + +N F ++ +V+ K+ +
Sbjct: 46 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNY---TSKAAY 102
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
HE + D L G + H
Sbjct: 103 VGYRHECAYILAKGRPRLPQNPLPDVLGW-----------------------KYSGNRHH 139
Query: 205 PTQKPE 210
PT+KP
Sbjct: 140 PTEKPV 145
>gi|262182373|ref|ZP_06041794.1| adenine-specific DNA-methyltransferase [Corynebacterium aurimucosum
ATCC 700975]
Length = 360
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 5/148 (3%)
Query: 27 NSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
++++ L A+ D+I+ DPPYN + D ++ + ++ + +
Sbjct: 3 DNLAALNDFIARGLRADVIYIDPPYNTGKDFVYRDNFRQRRDMRSEHFGQW--HAEWLSM 60
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGR 143
L+ R VL G + V + +L + K +
Sbjct: 61 MLPRLILAREVLADTGFILVSIGESECAHLRLILNEVFGEDCFAGQLIWKKGGTGKNDSK 120
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDAL 171
HE ++ + S G+ + +A
Sbjct: 121 YAVLEHEYVLCYAKSSANNGFNVDMEAQ 148
Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+ KP L+ ++ + P +++D F GSGT+ +L R
Sbjct: 265 VFDFPKPVRLIKHLISIAGGPDAVVVDFFAGSGTTAQAVVELNR 308
>gi|257065860|ref|YP_003152116.1| DNA methylase N-4/N-6 domain-containing protein [Anaerococcus
prevotii DSM 20548]
gi|256797740|gb|ACV28395.1| DNA methylase N-4/N-6 domain protein [Anaerococcus prevotii DSM
20548]
Length = 636
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 9/181 (4%)
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
S K + + + + D ++ + G ++ + KPE+LL
Sbjct: 399 FRRSFKDEDEIRDLENGSSVFSDYILKEFVEQLMGKGKTAKKDIVNNEDFKYAKPESLLK 458
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
I+ STK DIILD F GSGT+ AV+ K+RR +IGIE D+ +R+ V
Sbjct: 459 SIIEISTKEDDIILDFFLGSGTTAAVSHKMRRHYIGIEQMNYINDLTIERLKKVIEGEQG 518
Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN----ISATVCADGTLISGTELGS 330
++ ++ V L++ + L N + + + +G + S
Sbjct: 519 GIS-----KSVNWQGGGSFVYCELLEDNESLVNELEKAENTDQVKIVLNKAIDNGKLIPS 573
Query: 331 I 331
I
Sbjct: 574 I 574
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 14/184 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ IIKGN++ L + + +I+ D PY Y D DA ++ S
Sbjct: 173 NLIIKGNNLLALSSILKKYKGQIQMIYIDVPY--------YFNDTKEYDAF--KYNSNFS 222
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
F + F + + R +L +GTLW + + T+L + RK+
Sbjct: 223 FSTWLTFIKNRVELARELLTESGTLWFHVGEDGMHYVKTILDEIFGKEKFVGTMPRKTRE 282
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
N F + ++ + K D W + +
Sbjct: 283 GKNDVSFNFSQDFDFILIYTMGNKNDSVIRRKIQRSYIETDDFPGRPWRRGDIRQQKNYQ 342
Query: 197 NKDG 200
+
Sbjct: 343 ERPN 346
>gi|220915067|ref|YP_002490375.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
2060]
gi|219952818|gb|ACL63208.1| DNA methylase N-4/N-6 domain protein [Methylobacterium nodulans ORS
2060]
Length = 311
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/281 (14%), Positives = 77/281 (27%), Gaps = 53/281 (18%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+++ +++P VD PP++ D V S D+F + Y
Sbjct: 17 YHVDTVEFTKEMPDDCVDFSVYSPPFSSLYIYSESERDMGNV----GSDDEFQAHYRYL- 71
Query: 84 FTRAWLLACRRVLKPNGTLWVIG------------SYHNIFRIGTML---QNLNFWILND 128
+ R+ KP + I W +
Sbjct: 72 -----VKELFRITKPGRLTAIHVKDLVYYSNASERGDRGIRDFTGACIRTHVQEGWSFHR 126
Query: 129 IVWRKSNPMPNFRGR---------RFQNAHET-------LIWASPSPKAKGYT------- 165
+ P+ + +A T ++
Sbjct: 127 RITIDRCPVREMQKTKSDRLLYKNFRTDAARTGGGLPEYIVVFRKWADGMDAVPPVLHDP 186
Query: 166 --FNYDALKAANEDVQMRSDWLIPICSG---SERLRNKDGEKLHPTQKPEALLSRILVSS 220
++ + + + M S + R+ + H P L R++
Sbjct: 187 AEHPLESWQDLAQPIWMTSGIWYDTDETDVLNVRVARDAEAEKHLCPMPLDLTERLVRQY 246
Query: 221 TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
T P + + PF G G+ G + R FIG E+KQ Y A
Sbjct: 247 TNPDETVYSPFMGIGSEGYQSLLQGRRFIGTELKQSYYTQA 287
>gi|207110299|ref|ZP_03244461.1| adenine specific DNA methyltransferase (HINFIM) [Helicobacter
pylori HPKX_438_CA4C1]
Length = 114
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
R FIGIE YI A KR+ + + + +T L + P++ +LL+ + L++ G L
Sbjct: 1 RYFIGIEKDSFYIKEAAKRLNNTR-DKSDFITNLELETKPPKIPMSLLISKQLLKIGDFL 59
Query: 306 TNAQGNISATVCADGTLISGTE-LGSIHRVGAKVSGSETCNGWNFW 350
+ V +G + SIH++ AK T NF+
Sbjct: 60 YSPNKEKICQVLENGQVRDNENYETSIHKMSAKYLNKTTIMAGNFF 105
>gi|332300180|ref|YP_004442101.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
DSM 20707]
gi|332177243|gb|AEE12933.1| DNA methylase N-4/N-6 domain protein [Porphyromonas asaccharolytica
DSM 20707]
Length = 707
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 19/167 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ E+ ++ I+G+++SVL+ L V +I+ DPPYN N ++
Sbjct: 88 PVLEDSVDWDNTENLYIEGDNLSVLKLLQRSYVGKVKMIYIDPPYNTGKNLIYKNRFYTD 147
Query: 65 VDAVTDSWDKFSSFEAYD--------AFTRAWLLACR-------RVLKPNGTLWVIGSYH 109
+S +S E + F W +L +G + +
Sbjct: 148 TKEYLESTGVYSDNEGWLYCNKSTNGRFHSDWCSMIYSRLLLSRSLLSEDGIICLTIDDS 207
Query: 110 NIFRIGTMLQNLNFWILND-IVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ + +++ + + + K+NP + AHE ++
Sbjct: 208 EVQNVISIMNEIFGESNHLATIVVKNNPSGRSTTKGVSIAHEYALFY 254
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 23/162 (14%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
G+ L+N G K + L + P I+LD F GS T+
Sbjct: 397 WDDKRYSSTEYGANLLKNLLGTNCFDYPKSLYAVIDSLRIGSDPDSIVLDFFSGSATTAH 456
Query: 240 VAKKLR------RSFIGIEMKQD--------------YIDIATKRIASVQPLGNIELTVL 279
+L R FI +++ ++ DIA +RI +L
Sbjct: 457 AVMQLNAEDGGHRKFICVQLAEETPDGSEARKAGYKTIPDIAKERIRRAAVAIRNDLETE 516
Query: 280 TGKRTEP--RVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+ +VA V++ + L + A D
Sbjct: 517 KIRAQAKLAKVAMGEDVDKDP-ELWDNLYDDAERNQAQERLD 557
>gi|217031478|ref|ZP_03436983.1| hypothetical protein HPB128_21g36 [Helicobacter pylori B128]
gi|216946678|gb|EEC25274.1| hypothetical protein HPB128_21g36 [Helicobacter pylori B128]
Length = 175
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
++ L+++ +S+ I+ DPPYN + + Y Y+ + +
Sbjct: 3 ALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DDHADYEKWIKE 46
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + VLK +G +++ + + + ++ N F N + + +
Sbjct: 47 HLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTHNFLGTFITKQATRSNAKHINI 105
Query: 148 AHETLIWASPS 158
HE ++ + +
Sbjct: 106 THEYVLSYAKN 116
>gi|153869627|ref|ZP_01999177.1| DNA modification methyltransferase [Beggiatoa sp. PS]
gi|152073910|gb|EDN70826.1| DNA modification methyltransferase [Beggiatoa sp. PS]
Length = 183
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
LL RI+ +T GD +LDPF GSGT+ A L R IG+++ + I + +R+ +
Sbjct: 2 LLERIIHLTTDRGDTVLDPFCGSGTTLVAANLLERHAIGMDISEQAIALTQERLNNPIKS 61
Query: 272 GNIELT 277
+ L
Sbjct: 62 DSHLLK 67
>gi|114565597|ref|YP_752751.1| DNA modification methylase-like protein [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114336532|gb|ABI67380.1| DNA modification methylase-like protein [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 481
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
NE + IP + + E LHP + PE L+ + TKPGD + DP G+
Sbjct: 214 NELSIFNGNIEIPSWTIPKSPPRSSIEVLHPAKFPETLVEEFIKLFTKPGDNVFDPMAGT 273
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
G++ A + R+ IG+E+ ++ I R+
Sbjct: 274 GSTLIAALRNERNAIGVELSPEWASIGQNRLN 305
>gi|333011538|gb|EGK30951.1| DNA methylase [Shigella flexneri K-227]
gi|333011652|gb|EGK31061.1| DNA methylase [Shigella flexneri K-227]
Length = 156
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ + GN I V+ ++P ++D I DPPY + D + + +
Sbjct: 3 RFVLGNCIDVMARIPDNAIDFILTDPPY---------------LVGFRDRQGRTIAGDKT 47
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D + + RVLK + + ++ + R + +
Sbjct: 48 DEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKM 86
>gi|320458211|dbj|BAJ68832.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length = 408
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT KP L + + P ++LDPF GSGT+ ++ E+ Y+ +
Sbjct: 337 AHPTVKPLDLTRWLARLACPPHGLVLDPFAGSGTTLDACRREGLRCAATELDPTYLPLTA 396
Query: 263 KRIAS 267
R+
Sbjct: 397 DRLER 401
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDKFSSFE 79
+ ++ L L D I DPPY L L G++ R D +
Sbjct: 11 TLYNTDARR-LPDLLDAPADAIVTDPPYELGLGTAGEVKRWDSTG--------------- 54
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AF + A ++P V GS R+ +++ + I + I W ++ MP
Sbjct: 55 --IAFDPEFWTAMLGTVRPGAFALVFGSPRTWHRLACAMEDAGWLIRDQISWLYASGMP 111
>gi|322691200|ref|YP_004220770.1| phage protein [Bifidobacterium longum subsp. longum JCM 1217]
gi|320456056|dbj|BAJ66678.1| hypothetical phage protein [Bifidobacterium longum subsp. longum
JCM 1217]
Length = 408
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT KP L + + P ++LDPF GSGT+ ++ E+ Y+ +
Sbjct: 337 AHPTVKPLDLTRWLARLACPPHGLVLDPFAGSGTTLDACRREGLRCAATELDPTYLPLTA 396
Query: 263 KRIAS 267
R+
Sbjct: 397 DRLER 401
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDKFSSFE 79
+ ++ L L D I DPPY L L G++ R D +
Sbjct: 11 TLYNADARR-LPGLLDAPADAIVTDPPYELGLGTAGEVKRWDSTG--------------- 54
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AF + A +++P V GS R+ +++ + I + W ++ MP
Sbjct: 55 --IAFDPEFWTAMLGMVRPGAFALVFGSPRTWHRLACAMEDAGWLIRDQFCWLYASGMP 111
>gi|213692096|ref|YP_002322682.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213523557|gb|ACJ52304.1| DNA methylase N-4/N-6 domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 438
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HPT KP L + + P ++LDPF GSGT+ ++ E+ Y+ +
Sbjct: 367 AHPTVKPLDLTRWLARLACPPHGLVLDPFAGSGTTLDACRREGLRCAATELDPTYLPLTA 426
Query: 263 KRIAS 267
R+
Sbjct: 427 DRLER 431
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN--GQLYRPDHSLVDAVTDSWDKFSSFE 79
+ ++ L L D I DPPY L L G++ R D +
Sbjct: 41 TLYNTDARR-LPDLLDAPADAIVTDPPYELGLGTAGEVKRWDSTG--------------- 84
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
AF + A ++P V GS R+ +++ + I + I W ++ MP
Sbjct: 85 --IAFDPEFWTAMLGTVRPGAFALVFGSPRTWHRLACAMEDAGWLIRDQISWLYASGMP 141
>gi|300215360|gb|ADJ79773.1| type III restricction-modification system: methylase [Lactobacillus
salivarius CECT 5713]
Length = 479
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
++++ +L +KPE LL RI+ S+T DI+LD F GSG++ A A K+ R +I IE
Sbjct: 280 IKSEGSVELDNGKKPEKLLQRIIASATDENDIVLDFFGGSGSTAATAHKMNRKYITIEQM 339
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ-ILTNAQG 310
+ KR+ +V ++ + V L++ Q L + +
Sbjct: 340 DYVREKIVKRLNNVIEGDTTGIS-----KDVNWQGGGSFVYAELMEKNQGYLKDLKK 391
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+I+ DPPYN + D + + A+ F + L R +L +G
Sbjct: 1 MIYLDPPYNTGSDSF----------GYNDKF----NHSAWLTFMKNRLEIAREMLSDDGM 46
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILN 127
+++ + + ++ +
Sbjct: 47 IFIQTDDNEHAYLRVLMDEIFGVNRY 72
>gi|317181432|dbj|BAJ59216.1| Type II restriction enzyme M protein [Helicobacter pylori F57]
Length = 134
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
++ E +IWA S K + FNY+ LK N D QM W P + E+ K H
Sbjct: 1 MTHSAEQIIWARKSHK-HKHVFNYEVLKKINNDKQMHDVWSFPAIAPWEKTNGK-----H 54
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PTQKP ALL R+L+ ++ +I DPF GS T+G A L+R FIGIE + +++ I+ R
Sbjct: 55 PTQKPLALLVRLLLMASNENSLIGDPFSGSSTTGIAANLLKRQFIGIEKESEFVKISMDR 114
>gi|145638132|ref|ZP_01793742.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae PittII]
gi|145272461|gb|EDK12368.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae PittII]
Length = 396
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ QKPEAL+ RI+ +T DI+LD GSGT+ AVA K+ R +IGIE
Sbjct: 189 SERQDFDGQKPEALIKRIIELTTNESDIVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIE 248
Query: 259 DIATKRIAS 267
+A +R+
Sbjct: 249 TLAVERLKK 257
>gi|148377420|ref|YP_001256296.1| Type III restriction-modification system:methylase [Mycoplasma
agalactiae PG2]
gi|148291466|emb|CAL58851.1| Type III restriction modification system:Methylase [Mycoplasma
agalactiae PG2]
Length = 571
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 16/177 (9%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL-------PAKSV--DLIFADPPYNL 51
+ + SL+ N + N + +I G + L+ L +++V D+I+ DPPYN
Sbjct: 76 LKKDESLSFNNDNNKPA---NTLIIGENYDALKNLIVIERESQSETVNYDVIYIDPPYNT 132
Query: 52 --QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
L + V + + S + L ++LK +G ++V
Sbjct: 133 ESSLTDGNNLSEKDEVSSSKFIYRDKFSRTGWLNMLNERLRLSHQLLKEDGVIFVSIDDS 192
Query: 110 NIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQNA-HETLIWASPSPKAKGY 164
+ ++ + + G+ + E ++ S + +
Sbjct: 193 EHAYLKVLMDEIFGEENFVCNIVWQRKNTGGGSGKAGIDVETEYILIYSKNINKVNW 249
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 8/128 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------L 244
G + + + K KP L+ ++ +LD + GSGT+G +
Sbjct: 389 GKQIVISILENKDFSFPKPVDLIKFLINLHPNKETRVLDFYAGSGTTGHAVMELNKEDGG 448
Query: 245 RRSFIGIEMKQDYI--DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
R++ + ++ I ++ +R+ + + + + L +
Sbjct: 449 NRNYTLVTNNENNIATNVCYERLYRINNGISTNNESNFDWIKKNEPYKSNLNVYNIEYYS 508
Query: 303 QILTNAQG 310
L +
Sbjct: 509 TKLFDDNQ 516
>gi|309799883|ref|ZP_07694088.1| type III restriction-modification system: methylase [Streptococcus
infantis SK1302]
gi|308116473|gb|EFO53944.1| type III restriction-modification system: methylase [Streptococcus
infantis SK1302]
Length = 262
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDW--LIPICSGSERLRNKDGEKLHPTQKPEA 211
K + + + D + + ++ + + + + L + + +KPE
Sbjct: 5 QFYKGDKCRLFVWLKDTSEVIDSELFKKDLQGTYWDMNAWMKNLTKEGSVEFGNGKKPEQ 64
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+ +I +T+PGD +LD F GSGT+ AVA K+ R ++GIE+ R+ +
Sbjct: 65 LIRQIFEMTTEPGDWVLDSFLGSGTTAAVATKMDRKWVGIELGNHAYTHCKVRLDRIVNG 124
Query: 272 GN 273
+
Sbjct: 125 ED 126
>gi|222529643|ref|YP_002573525.1| adenine-specific DNA methylase [Caldicellulosiruptor bescii DSM
6725]
gi|222456490|gb|ACM60752.1| adenine-specific DNA methylase [Caldicellulosiruptor bescii DSM
6725]
Length = 416
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G +P P L ++ S TK DI+LDPF GSGT A K R+ IG+++ I
Sbjct: 27 HGIHSYPAMMPAPLAEFLIQSFTKKNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPLAI 86
Query: 259 DIATKRIA 266
I+ +I
Sbjct: 87 LISNVKIN 94
>gi|32455951|ref|NP_862409.1| putative DNA modification methyltransferase [Micrococcus sp. 28]
gi|18025397|gb|AAK62505.1| putative DNA modification methyltransferase [Micrococcus sp. 28]
Length = 398
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNK------------DGEKLHPTQKPEALLSRILVS 219
N + + W P SER++ H QKP L+ R++ +
Sbjct: 259 HRWNHVHGLTNVWNRPALHDSERMKGSLRRSAPRVYRPTKASTTHLNQKPLELMERLVHA 318
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+T PGD++ +PF G T A R EM + ++A +R+
Sbjct: 319 TTDPGDVVWEPFGGLATGSVAAVATGRDAYVAEMDPFFAELAGERL 364
>gi|9630519|ref|NP_046948.1| gp52 [Enterobacteria phage N15]
gi|3192738|gb|AAC19091.1| gp52 [Enterobacteria phage N15]
Length = 284
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 2/160 (1%)
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
K + W S + + + ++ V + P P G +
Sbjct: 109 KKMCSHWFSSSQWQLPSLDDFNKLHELFMQRAQVLGVACPPPFDIGYSEHEKQYADLKTQ 168
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
Y ++ + +D ++ G+ HP +KP A++ I
Sbjct: 169 YDAVKAQYDGLKAQYESLRRPFSVTADVPYTDVWEFPPVQYYPGK--HPCEKPAAMMEHI 226
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ SS++PGD++ D F GSG++ A KL R IG+E++++
Sbjct: 227 IRSSSRPGDVVADFFMGSGSTIKEALKLGRKAIGVEIEEE 266
>gi|206603890|gb|EDZ40370.1| Putative DNA methylase N-4/N-6 [Leptospirillum sp. Group II '5-way
CG']
Length = 453
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 20 KDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLN----GQLYRPDHSLVDAVTDSW 72
++G ++ +L L + + +I+ DPPYN + R A D+
Sbjct: 65 LHLFLEGENLHILRLLKKEYAGAIGVIYIDPPYNTGTTMRYFDRFSRRGGPSGLAGGDTG 124
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML--QNLNFWILNDIV 130
+ + +F L+ R +L+ +G L+V +I L + V
Sbjct: 125 SRRDD-SPWLSFLYPRLILARELLREDGALFVSIDDRSIHHHLRYLLDEIFGPDNHAGTV 183
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ + R E ++ S ++ + + NE
Sbjct: 184 VWRKKVVRGRGHRHIIPQTEYVVVYGRSLQSLPSFSEPLSPEMINE 229
>gi|115289066|gb|ABI85547.1| M.Hin1056ModP-9 [Haemophilus influenzae]
Length = 297
Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
K + + ++ ++ IIKGN++ L L V LI+ D P+N +
Sbjct: 206 KQPVGEIKRRSDGTPAENLIIKGNNLVALHTLKMQFKGKVKLIYIDVPFNTGNDSF---- 261
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
D + S + F + L + +L +G ++V
Sbjct: 262 ------GYNDKF----SRSTWLTFMKNRLEVAKDLLADDGVIFVHC 297
>gi|307151130|ref|YP_003886514.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306981358|gb|ADN13239.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7822]
Length = 329
Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 91/300 (30%), Gaps = 85/300 (28%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
+ LIF PP+ L + Y + +L
Sbjct: 36 KGQIQLIFTSPPFPLNSKKSYGNMLG----------------DEYLQWFTDLAPLFAEML 79
Query: 97 KPNGTLWV-IGSYHNIFRIGTMLQNLNFWI------------LNDIVWRKSNPMPNFRGR 143
+G++ + +G+ R L L + + + + + +P+
Sbjct: 80 TEDGSIVIELGNSWESQRPVQSLLPLQSLLSFVSCAGTNLRLIQEFICYNPSRLPSPANW 139
Query: 144 RFQNAHETLIWASP-----------------------SPKAKGYTFNYDALKAANEDVQ- 179
N T+ + K T NY++ K +E
Sbjct: 140 VTVNRIRTVDSYTRLWWVAKTDSPKADNSKVLRPYSERMKYLLRTGNYNSGKRPSEHKIG 199
Query: 180 -----------MRSDWLIPICSGSER-------------------LRNKDGEKL--HPTQ 207
+ ++L S+R + K+ HP +
Sbjct: 200 KTSFLKDCGGSIAHNFLELDDMDSQRKVRLPNAFSYSNSSSNNFFAKTCKERKITPHPAR 259
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P L + + T PGD +LDPF GS T+G A +L R ++ I+ ++ +++ + R
Sbjct: 260 MPMGLPAFFIEFLTDPGDWVLDPFAGSNTTGYAAARLNRKWLAIDAEKQFVEQSKIRFED 319
>gi|260664656|ref|ZP_05865508.1| DNA methylase [Lactobacillus jensenii SJ-7A-US]
gi|260561721|gb|EEX27693.1| DNA methylase [Lactobacillus jensenii SJ-7A-US]
Length = 480
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N+ G +KPE LL RI+ T GDI+LD F GS T+ AVA KL R FIG+E
Sbjct: 279 NQGGVSFTNAKKPEQLLKRIINLCTNEGDIVLDCFMGSATTQAVALKLNRQFIGVEQMDY 338
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
I+ R+ V + + + + L++ Q
Sbjct: 339 INTISVPRLQKVIEGEQGGI---SKNKDVKWQGGGSFIYAELMEKSQ 382
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 22/169 (13%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
IIKGN++ L L + LI+ DPP+N + NG D +
Sbjct: 2 IIKGNNLIALYSLVDRYASKIKLIYLDPPFNTK-NGDFPYNDRF-------------NHS 47
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ F + + R++LK +G +++ + + +L + + + V S +
Sbjct: 48 TWLTFMKNRIDVARKLLKEDGLIFIEIDHLEEAYLKVLL--DMSFGIQNYVATISVKSNS 105
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
G + + +T++ + + N N + W
Sbjct: 106 ISGSKTSHKGKTIL---KNYDSILVYKNGAENIKINPQYTPKEKWDTHY 151
>gi|217967679|ref|YP_002353185.1| DNA methylase N-4/N-6 domain protein [Dictyoglomus turgidum DSM
6724]
gi|217336778|gb|ACK42571.1| DNA methylase N-4/N-6 domain protein [Dictyoglomus turgidum DSM
6724]
Length = 1015
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 5/152 (3%)
Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
+ + S K + ++ ++ + ++W + PT+
Sbjct: 696 CEVPYYSTISKCEICGKKEFKIQIFYDEESLTTNWTDEMSYAQSNFWGIK----FPTENS 751
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E LL R++ S++ GD+++D F GSGT+ AVA KL+R +IGIEM + + + R+ V
Sbjct: 752 EILLKRVIESTSNQGDLVMDFFLGSGTTTAVAHKLKRKWIGIEMGEHFWTVVLPRMKKVL 811
Query: 270 PLGNIEL-TVLTGKRTEPRVAFNLLVERGLIQ 300
+ K + +++
Sbjct: 812 AYDKSGISKEKDVKEKYNEKTAGGFFKYQILE 843
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 22/184 (11%)
Query: 1 MSQKNSLAINEN---QNSIFEWKDKI-IKGNSISVLEKLPA---KSVDLIFADPPYNLQL 53
++ L + E + + + D I IK + L L + V I+ DPP+N +
Sbjct: 445 FDEEFKLKLLEKISEKYDLDDVLDGILIKSENWQALNLLLNKYKEKVQTIYIDPPFNKEQ 504
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + + L R +L G+++V Y+
Sbjct: 505 DADYLYNVRYK-------------DSTWISMLENRLRLARDLLSDKGSIFVRCDYNGNMY 551
Query: 114 IGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ ++ + N+I +++ G + A E+L++ + S K +
Sbjct: 552 VRLLMNEIFGEENFRNEITIKRTEGKSRTEGLSYSIATESLLFYAKSEKQYFMIPSRKTD 611
Query: 172 KAAN 175
N
Sbjct: 612 FYKN 615
>gi|116494139|ref|YP_805873.1| adenine specific DNA methylase Mod [Lactobacillus casei ATCC 334]
gi|116104289|gb|ABJ69431.1| Adenine specific DNA methylase Mod [Lactobacillus casei ATCC 334]
Length = 462
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D G+E L+ K+ KPE LL I+ + GD +LD GS T+ AVA
Sbjct: 251 DAKYSNRRGTEELQKLFDGKVFSFPKPENLLKTIIEIGSNAGDTVLDFHMGSATTQAVAM 310
Query: 243 KLRRSFIGIEMKQDYIDIATKRIAS 267
K+ R FIGIE ++ R+
Sbjct: 311 KMHRHFIGIEQMDYINTVSVPRLQK 335
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 15/132 (11%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
L+K + +++I+ DPPYN + A D +++ + F + L
Sbjct: 7 LKKKYSNKINMIYIDPPYNTGSDSF----------AYNDKFNE----STWLTFMKNRLEV 52
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
+ +L +G ++V + + ++ + + S P G F H+
Sbjct: 53 SKELLTDDGVIFVSIDRNEFAELKVLMDEVFENSYLGTMINVSTPNGRDYGS-FAQTHDY 111
Query: 152 LIWASPSPKAKG 163
+ + +
Sbjct: 112 IHVYAKNIDMVK 123
>gi|295395114|ref|ZP_06805323.1| DNA (cytosine-5-)-methyltransferase [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972062|gb|EFG47928.1| DNA (cytosine-5-)-methyltransferase [Brevibacterium mcbrellneri
ATCC 49030]
Length = 407
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 15/138 (10%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I+G+++ L+ L V +++ DPPYN P A +
Sbjct: 52 VIEGDNLDALKHLQQTHKHRVSVVYIDPPYNTGN----ALPYRDTFGA--------AGHA 99
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ + L+ R +++ +G ++V + + + +
Sbjct: 100 GWMSMMLPRLIVARELMRLDGVIFVSIDDREHAFLTLVGHQVFGEENFLGSFVHQRARGG 159
Query: 140 FRGRRFQNAHETLIWASP 157
+ R + H+ + +
Sbjct: 160 GQARTWIRGHDYIAVWAK 177
>gi|300692137|ref|YP_003753132.1| hypothetical protein RPSI07_2502 [Ralstonia solanacearum PSI07]
gi|299079197|emb|CBJ51868.1| hypothethical protein [Ralstonia solanacearum PSI07]
Length = 139
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
SD +++ LHPT KP L R + +S++PGD++LD F GSGT+
Sbjct: 38 RHWCSDRDQGDVW---QIKKPARNDLHPTMKPAELAERAIRNSSRPGDVVLDAFGGSGTT 94
Query: 238 GAVAKKLRR 246
A+K R
Sbjct: 95 LIAAEKAAR 103
>gi|238855822|ref|ZP_04646112.1| twin-argninine leader-binding protein DmsD [Lactobacillus jensenii
269-3]
gi|282931511|ref|ZP_06337013.1| putative type III restriction-modification system HindVIP enzyme
mod [Lactobacillus jensenii 208-1]
gi|238831559|gb|EEQ23906.1| twin-argninine leader-binding protein DmsD [Lactobacillus jensenii
269-3]
gi|281304363|gb|EFA96463.1| putative type III restriction-modification system HindVIP enzyme
mod [Lactobacillus jensenii 208-1]
Length = 480
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N+ G +KPE LL RI+ T GDI+LD F GS T+ AVA KL R FIG+E
Sbjct: 279 NQGGVSFTNAKKPEQLLKRIINLCTNEGDIVLDCFMGSATTQAVALKLNRQFIGVEQMDY 338
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
I+ R+ V + + + + L++ Q
Sbjct: 339 INTISVPRLQKVIEGEQGGI---SKNKDVKWQGGGSFIYAELMEKSQ 382
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 22/169 (13%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
IIKGN++ L L + LI+ DPP+N + NG D +
Sbjct: 2 IIKGNNLIALYSLVDRYASKIKLIYLDPPFNTK-NGDFPYNDRF-------------NHS 47
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ F + + R++LK +G +++ + + +L + + + V S +
Sbjct: 48 TWLTFMKNRIDVARKLLKEDGLIFIEIDHLEEAYLKVLL--DMSFGIQNYVATISVKSNS 105
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
G + + +T++ + + N N + W
Sbjct: 106 ISGSKTSHKGKTIL---KNYDSILVYKNGAENIKINPQYTPKEKWDTHY 151
>gi|149173391|ref|ZP_01852021.1| Adenine-specific DNA methylase [Planctomyces maris DSM 8797]
gi|148847573|gb|EDL61906.1| Adenine-specific DNA methylase [Planctomyces maris DSM 8797]
Length = 282
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDIILDPFFGSGTSGA 239
R R ++ HP PE L+ R++ + G++ILDPF GSG++
Sbjct: 27 RWIQNSISVWSDIRKSLEEVRLKHPAIFPEMLVERLIETFLPLQGEVILDPFAGSGSTIV 86
Query: 240 VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
A+K+ ++ IG+E+ +DY ++A R+ ++ + +
Sbjct: 87 TAEKMGKTGIGLELSEDYAEVARNRLMALSLEADEQ 122
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 39/154 (25%), Gaps = 5/154 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV---TDSWDKFSSF 78
+II G+++ + E + +SVDL PPY + Q DH V +
Sbjct: 128 RIIHGSALQLAEHVAPESVDLCITSPPYW-NVLNQRRSADHKEVRHYGNHDQDLGVIEDY 186
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
A+ LKP I R +L + +
Sbjct: 187 NAFLDELDRVFTQVLTALKPGAYCCAIVMDLRKRSRFFPFHSDLASRLQEVGFLYDDLII 246
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
N + K +
Sbjct: 247 WNRQAEYNNLRPLGFPSVFRVNKVHEFIVLMQKP 280
>gi|21323668|dbj|BAB98295.1| Adenine specific DNA methylase Mod [Corynebacterium glutamicum ATCC
13032]
Length = 280
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ + LE L S+D I+ DPPYN Y D A D +
Sbjct: 35 HTVVNAENYHALEMLTYTHRHSIDAIYIDPPYNTGARDWKYDND---YVASDDDYR---- 87
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ AF L CR +++ + TL H + R+G +L L +V +NP
Sbjct: 88 HSKWLAFMERRLKICRELMRSDATLVATIDEHEVNRLGVLLDQLFPESTRQLVTIVNNPK 147
Query: 138 PNFRG 142
+G
Sbjct: 148 GVTQG 152
>gi|292489779|ref|YP_003532669.1| putative DNA adenine methylase [Erwinia amylovora CFBP1430]
gi|291555216|emb|CBA23461.1| putative DNA adenine methylase [Erwinia amylovora CFBP1430]
Length = 164
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
S+ + + + G+ HP +KP L+ I+ SST+PGD++ D F GSG + A
Sbjct: 82 SEVPYTDVWTFKPVASYPGK--HPCEKPAELMEHIITSSTRPGDVVADFFMGSGATVKAA 139
Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
KL R+ IG+E++++ I
Sbjct: 140 LKLGRTAIGVELEEERFLQTKAEI 163
>gi|292898012|ref|YP_003537381.1| DNA methylase [unidentified phage]
gi|291197860|emb|CBJ44955.1| putative DNA methylase [unidentified phage]
Length = 194
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
S+ + + + G+ HP +KP L+ I+ SST+PGD++ D F GSG + A
Sbjct: 112 SEVPYTDVWTFKPVASYPGK--HPCEKPAELMEHIITSSTRPGDVVADFFMGSGATVKAA 169
Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
KL R+ IG+E++++ I
Sbjct: 170 LKLGRTAIGVELEEERFLQTKAEI 193
>gi|227501376|ref|ZP_03931425.1| possible site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
35098]
gi|227216439|gb|EEI81854.1| possible site-specific DNA-methyltransferase
(cytosine-N(4)-specific) [Anaerococcus tetradius ATCC
35098]
Length = 102
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ II ++IS L++ P K+ D PPY + + + S E
Sbjct: 10 NYIINLDAISALKEFPDKTFDCCITSPPYYGLRDYKA-----------EGQIGREESPEE 58
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSY 108
Y +RVLK GTLWV+
Sbjct: 59 YLNKLIEVFREVKRVLKKEGTLWVVIGD 86
>gi|42561467|ref|NP_975918.1| adenine-specific DNA-methyltransferase [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|42492966|emb|CAE77560.1| Adenine-specific DNA-methyltransferase [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
Length = 247
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 22 KIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-SWDKFSSF 78
KI +S ++E+ S V+ I DPPYN+ + + + + WD
Sbjct: 92 KIYNADSYKIVEQFINNSTKVNHIITDPPYNISQSNNFHTLRSANRQGLNFGKWD----- 146
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
YD +W+ ++L NG++ + SY I I L++ I + I W K+NPMP
Sbjct: 147 --YDFDLISWIKPYSKLLDKNGSMIIFCSYKYISFIIEELESNMLEIKDVIKWVKTNPMP 204
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFN 167
RR+ E IWA +++ +
Sbjct: 205 RNVNRRYVQDTEYAIWAVKKNQSECLINH 233
>gi|308178020|ref|YP_003917426.1| site-specific DNA-methyltransferase (adenine specific)
[Arthrobacter arilaitensis Re117]
gi|307745483|emb|CBT76455.1| putative site-specific DNA-methyltransferase (adenine specific)
[Arthrobacter arilaitensis Re117]
Length = 296
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++ + LE L S+D I+ DPPYN Y D A D +
Sbjct: 51 HTVVNAENYHALEMLTYTHRHSIDAIYIDPPYNTGARDWKYDND---YVASDDDYR---- 103
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ AF L CR +++ + TL H + R+G +L L +V +NP
Sbjct: 104 HSKWLAFMERRLKICRELMRSDATLVATIDEHEVNRLGVLLDQLFPESTRQLVTIVNNPK 163
Query: 138 PNFRG 142
+G
Sbjct: 164 GVTQG 168
>gi|325202336|gb|ADY97790.1| type III restriction-modification system enzyme mod [Neisseria
meningitidis M01-240149]
gi|325207911|gb|ADZ03363.1| DNA methylase [Neisseria meningitidis NZ-05/33]
Length = 542
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 56/194 (28%), Gaps = 29/194 (14%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTDS- 71
I+ ++ L+ L SV +I+ DPPYN + +Y R +++ TD
Sbjct: 2 FIEAENLEALKILQKSYAGSVKMIYIDPPYNTGNDSFVYPDKFSESREEYARRVGDTDDA 61
Query: 72 ------------W-----DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
W D + + L + +L+ +G +++ + ++
Sbjct: 62 GYLKRDGVFQGAWRKNGKDSGHYHSNWLSMMLPRLHLAKTLLREDGVIFISIDDNEQAQL 121
Query: 115 GTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+ + + +E L+ + S +
Sbjct: 122 KLLCDEVFGAENFVGQFPWRKRTAKSDVPFGVSADYEYLLAYARSNAFIASIDAEERRYF 181
Query: 174 ANEDVQMRSDWLIP 187
+D R
Sbjct: 182 ETDDFPNRPWRTHD 195
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------ 243
+G++ + KL KP +L+ +L +ILD F GSGT+ +
Sbjct: 294 NGTKEITELFKSKLFDFPKPSSLIKYLLQILHVSDGLILDFFSGSGTTAHAVMQLNAEDG 353
Query: 244 LRRSFIGIEM 253
R FI +++
Sbjct: 354 GNRRFICVQL 363
>gi|167045608|gb|ABZ10258.1| hypothetical protein ALOHA_HF4000APKG10I20ctg9g1 [uncultured
marine crenarchaeote HF4000_APKG10I20]
Length = 89
Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+KI + I ++ +P + +DL+ DPP+ + + + ++ E
Sbjct: 1 MNKIYNKDCIVGMKAIPNEKIDLVITDPPFAINFKANKANYNRTASRVLSGY--HEIKVE 58
Query: 80 AYDAFTRAWLLACRRVLK 97
Y FT AW+ R+LK
Sbjct: 59 DYYDFTNAWMYDIYRILK 76
>gi|148262672|ref|YP_001229378.1| DNA methylase N-4/N-6 domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146396172|gb|ABQ24805.1| DNA methylase N-4/N-6 domain protein [Geobacter uraniireducens Rf4]
Length = 1073
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 21/213 (9%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLY 58
S+ + E N +I G+++ L L + V ++ DPPYN + LY
Sbjct: 476 SEFKDKLLAEIDNLDESLDGLLIHGDNVQALNLLQEQYREQVKCVYTDPPYNTKTRDFLY 535
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + ++ + + AC L G + + +L
Sbjct: 536 KDSYK--------------HSSWASMMFDRISACHGFLTNEGLICHYIDENEHTIASLVL 581
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ N N + HE L+ A KA + + E
Sbjct: 582 NEVFGTDNRCGDVVWKNSSKNDQ-DYVSMQHEYLLLAVK-GKAFNKGEWNERKEGLEEIY 639
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
+ + + + + ++ + Q PE+
Sbjct: 640 AAFNGFRKKHETDWKAIHSEALK--WYRQFPES 670
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 6/146 (4%)
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
P +R + + N E + S S+
Sbjct: 715 KEPASGWRFPEETMKKRIVDGLVHFGDDEATIPNNKTYLKDTETQSLTSIKYRDGRVASK 774
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK------KLRRS 247
L G K K + R+L + + +LD F G+GT+G K RR
Sbjct: 775 LLAAMFGGKTFSNPKDVDISMRLLRAFQTQNEWVLDFFAGTGTAGHAVLALNREDKTRRK 834
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGN 273
+I +E + + + RI V +
Sbjct: 835 YILVEQGEYFDTVLKPRIQKVVYSAD 860
>gi|118462638|ref|YP_879564.1| adenine specific DNA methylase Mod [Mycobacterium avium 104]
gi|118163925|gb|ABK64822.1| adenine specific DNA methylase Mod [Mycobacterium avium 104]
Length = 662
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 12/190 (6%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I + LE L ++D I+ DPPYN Y D D +
Sbjct: 88 HTVINAENFHALEMLTYTHRHAIDAIYIDPPYNSGAKDWKYNND---YVESDDDYR---- 140
Query: 78 FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ A LL R +L P + L V R+G +++ + +V NP
Sbjct: 141 HSKWLAMMERRLLIARELLNPADSVLIVTIDEKEYLRLGLLVEQMFPEARIQMVSSVINP 200
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE-RL 195
R F E + + A N +E + RS + G L
Sbjct: 201 GGASRTAAFTRVDEYIFFVKIGSAAPAKHSNDMLFTDVSEPDENRSPIWRGMLRGGSGPL 260
Query: 196 RNKDGEKLHP 205
R+ K +P
Sbjct: 261 RSDSPSKFYP 270
Score = 39.6 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 9/118 (7%)
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV--SSTKP 223
+N + + GS L+ + P K + L KP
Sbjct: 378 YNPERERTLPAKTVWNRQSHNATEYGSNLLKAILPNRKFPYPKSLYAVEDTLRFFIDDKP 437
Query: 224 GDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ-DYIDIATKRIASVQPLGNI 274
++LD F GSGT+ +L R I + + + R ++P
Sbjct: 438 DAVVLDFFSGSGTTAHAVMRLNKQDGGRRQCISVTNNEVSADEQTRLRREGLRPGDAD 495
>gi|298290021|ref|YP_003691960.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
gi|296926532|gb|ADH87341.1| DNA methylase N-4/N-6 domain protein [Starkeya novella DSM 506]
Length = 499
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HPT KP L+ ++ T G +LDPF G+GT+G A + + + IE Y +
Sbjct: 396 HPTVKPVDLMQWLVRLVTAKGGTVLDPFAGTGTTGEAAWREGCNAVLIERNPPYQADIRR 455
Query: 264 RIASV 268
R+A
Sbjct: 456 RMALC 460
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH-----------SLVDAVTD 70
+ G+S L+ + SVD DPPY L G+ + + + +
Sbjct: 12 TLYCGDSRDALDLIEPNSVDNCVCDPPYALVSIGKRFGKEGAAPAKGGVYQRASGGFMGQ 71
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
SWD AF + R LKP G + G R+ +++ F I +
Sbjct: 72 SWDTGE-----VAFDAKFWRKVFRALKPGGHVIAFGGTRAYHRLAVAIEDAGFEIRD 123
>gi|261839364|gb|ACX99129.1| hypothetical protein HPKB_0529 [Helicobacter pylori 52]
Length = 491
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
K+ +NQ + E +IK + L L +++D I+ DPPYN Q N +Y
Sbjct: 375 FKDLEEEIKNQFNEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYA 434
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ ++ + L ++L G ++V + + T++
Sbjct: 435 DNFKR--------------SSWLSMMENRLELAHKLLNDKGAMFVSIDDNEQAYLKTLMD 480
Query: 120 NLNFW 124
+
Sbjct: 481 EVFNG 485
>gi|91215021|ref|ZP_01251993.1| type III restriction-modification system: methylase [Psychroflexus
torquis ATCC 700755]
gi|91186626|gb|EAS72997.1| type III restriction-modification system: methylase [Psychroflexus
torquis ATCC 700755]
Length = 652
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KPE LL RI+ +T GDI+LD F GSGT+ V+ K+ R +IGIE D+ R+
Sbjct: 466 KKPEELLYRIIKMATNEGDIVLDFFVGSGTTPCVSHKMNRKYIGIEQMDYIQDLPYNRLV 525
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
V L+ ++ + L A +
Sbjct: 526 KVIEGEQGGLS-----KSLKWQGGGSFIYA-------ELIEYNQKYIAKI 563
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 20/148 (13%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
+ LI+ DPP+N + + D++ + + F L + +L
Sbjct: 196 GKIKLIYIDPPFNTENDSFR----------YNDTF----NHSTWLTFILNRLEIAKELLT 241
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+G +++ I + + + V + G + + +T+I
Sbjct: 242 DDGLIFIHLD--QIEEAYMKIVCDEVFERENYVNTITVKSSTPSGTKTAHKDKTIIKQKD 299
Query: 158 ----SPKAKGYTFNYDALKAANEDVQMR 181
K FN + +N D
Sbjct: 300 FILVYRKTNKARFNPQYKRKSNWDTHFN 327
>gi|270634778|ref|ZP_06222031.1| methylase [Haemophilus influenzae HK1212]
gi|270317489|gb|EFA28974.1| methylase [Haemophilus influenzae HK1212]
Length = 84
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+I E+ K+ KLHPTQKP A+L R++ T GD+++DP GS ++ A++L
Sbjct: 1 MIKNWFEWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAAREL 60
Query: 245 RRSFIGIEMKQDYIDIATKRI 265
R G E+K+D IA +++
Sbjct: 61 NRPSYGFEIKKDSCKIAKEQM 81
>gi|315932576|gb|EFV11508.1| type III restriction enzyme M protein [Campylobacter jejuni subsp.
jejuni 327]
Length = 448
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 19/109 (17%)
Query: 1 MSQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQ 56
+S++N + ++ ++ E + +++K ++ L L +DLI+ DPP+N +
Sbjct: 355 LSEENYYKLLQSFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFD 414
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
DKF + + L + L G+ I
Sbjct: 415 YK--------------DKFQD-STWLSLMHNRLELAKEFLSDKGSFICI 448
>gi|320104895|ref|YP_004180486.1| DNA methylase N-4/N-6 domain-containing protein [Isosphaera pallida
ATCC 43644]
gi|319752177|gb|ADV63937.1| DNA methylase N-4/N-6 domain protein [Isosphaera pallida ATCC
43644]
Length = 1078
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 21/169 (12%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ + L + A + V ++ DPPYN +G LYR D F
Sbjct: 495 LFHSENFQALSLMQARYREKVKCVYIDPPYNTGEDGFLYR-------------DNFQ-HS 540
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL--NDIVWRKSNPM 137
++ + L L G + V + R+ ++ ++ + I+W+K +
Sbjct: 541 SWLTYITDRLNMGWASLSAIGAMSVSVDDAEVSRLRMLMDSIFGDLRFVEHIIWKKRSTP 600
Query: 138 PNFR--GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
PN + G + + A A + + N D + W
Sbjct: 601 PNDKVLGAQHEYALVYCKGTQKESLAFRQRTDAQLARYRNPDNHPKGPW 649
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
KP + L ++ + D F GSGT+G L R FI +EM
Sbjct: 754 TAFENPKPVGYIEEFLRLTSDLNSPVSDFFAGSGTTGHAVINLNREDGGRRKFILVEMAD 813
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERG 297
+ + R+ V T R+ +ERG
Sbjct: 814 YFDTVLLPRLKKVA------FTPEWKDGRPKRLPTAEEIERG 849
>gi|294795100|ref|ZP_06760235.1| type III restriction-modification system EcoPI, modification
subunit [Veillonella sp. 3_1_44]
gi|294454462|gb|EFG22836.1| type III restriction-modification system EcoPI, modification
subunit [Veillonella sp. 3_1_44]
Length = 653
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 59/170 (34%), Gaps = 26/170 (15%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---- 55
+ N L N+N ++ I G+++ L L + I+ DPPYN +
Sbjct: 91 EHNRLDENKNS------ENVYIIGDNLEALRHLLGSYIGKIKCIYIDPPYNTGEDFIYND 144
Query: 56 ----------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
+ D + + D K SS A+ F L+ R +L+ +G +++
Sbjct: 145 SFAFTADDLVERIGIDRQEAERILDLNGK-SSHSAWLTFMYPRLVLARLLLREDGVIFIS 203
Query: 106 GSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ + + + D+ + +++ N H +
Sbjct: 204 IDDNEYANLKQICDEIFGEENFQADVAVVANPGGRDYKNIAITNEHLLIY 253
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
+ K GY + KA + + + G+ E K L+ +
Sbjct: 365 ARKKKNGGYNIYEKSRKATTKAKSLWNGVGYRTEDGTRSFNELFEESYFDHPKSPELIKQ 424
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
L+ DI+LD F GS T+ + R +I +++
Sbjct: 425 CLIIGMSEDDIVLDFFSGSATTAEAIMQLNASDLGNRKYILVQL 468
>gi|172035872|ref|YP_001802373.1| putative DNA-methyltransferase [Cyanothece sp. ATCC 51142]
gi|171697326|gb|ACB50307.1| putative DNA-methyltransferase [Cyanothece sp. ATCC 51142]
Length = 91
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+G+ + ++ + S+DLIFADPP+NL D + Y +
Sbjct: 2 YQGDCLDLMFHTASDSIDLIFADPPFNLSKIYPSKINDQLM-------------DRDYLS 48
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ WL C R+LKP G+L++ + L
Sbjct: 49 WCETWLKDCIRILKPGGSLFLWNLPKWNTYLSQFLNQY 86
>gi|325953907|ref|YP_004237567.1| DNA methylase N-4/N-6 domain protein [Weeksella virosa DSM 16922]
gi|323436525|gb|ADX66989.1| DNA methylase N-4/N-6 domain protein [Weeksella virosa DSM 16922]
Length = 337
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ ++ ++ KLP++S+D+I DPPY + ++ V D F
Sbjct: 3 KLYNCDNAELMAKLPSESIDVICTDPPY--------LYLKNQKLERVFDEQKFF------ 48
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
C+R+L G + + G + +R T+L +L F +I+W KS+
Sbjct: 49 --------SECKRLLTKKGFIVLFGRGESFYRWNTILADLGFTFKEEIIWNKSHCTSPLM 100
Query: 142 GRRFQNAHETLIWASP 157
HET+ +
Sbjct: 101 R--LSRVHETISIFTK 114
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 203 LHPTQKPEALLSRIL-----VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+HPTQKP LL R+L + K ++LDPF GS ++ + I E+ ++Y
Sbjct: 258 IHPTQKPVRLLERLLALVIPQNKDKEDIVVLDPFGGSFSTMEAVYNMGMKGISCEIDEEY 317
Query: 258 IDIATKRIASVQP 270
+ RI ++QP
Sbjct: 318 FENGKNRIENLQP 330
>gi|332673101|gb|AEE69918.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
Length = 384
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
++ L+++ +S+ I+ DPPYN + + Y + Y+ +
Sbjct: 3 ALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DAHADYEKWIEE 46
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + VLK +G +++ + + + ++ N F N + + +
Sbjct: 47 HLILAKAVLKQSGCIFISIDDNKMAEVK-IIANEIFGTHNFLGTFITKQATRSNAKHINI 105
Query: 148 AHETLIWASPS 158
HE ++ + +
Sbjct: 106 THEYVLSYAKN 116
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 254 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 313
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
++ + + + + + +++L K + ++ +L+
Sbjct: 314 QAVIEVNKDYY---LNWSFYL---CQKEETIKNNPQAISILKNKGYQNTISNIMLLR 364
>gi|312877586|ref|ZP_07737545.1| adenine-specific DNA methylase [Caldicellulosiruptor lactoaceticus
6A]
gi|311795661|gb|EFR12031.1| adenine-specific DNA methylase [Caldicellulosiruptor lactoaceticus
6A]
Length = 416
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G +P P L ++ S TK DI+LDPF GSGT A K R+ IG+++ I
Sbjct: 27 HGIHSYPAMMPAPLAEFLIQSFTKRNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPLAI 86
Query: 259 DIATKRIA 266
I+ +I
Sbjct: 87 LISNVKIN 94
>gi|296243018|ref|YP_003650505.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
gi|296095602|gb|ADG91553.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
Length = 311
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D + S +R + + P + +++ T GD++LDP GSGT+ A
Sbjct: 47 DVSTTVWSFPKRGSWATHKGDYRGNWPPQIPRALILKYTSEGDVVLDPMVGSGTTCIEAV 106
Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
L R+ IG+++ + + R+
Sbjct: 107 LLGRNCIGVDLNYHAVMLTHHRL 129
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY-NL-QLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KI G++ L+K+ +VDL+ PPY N+ + + D S V E
Sbjct: 149 KIYHGDARR-LDKIRDDTVDLVLTHPPYLNIVRYGEERSEGDLSAVRG----------LE 197
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ + RVLKP TL V+ I + L + L D + +
Sbjct: 198 EFLVLFKEIAREVYRVLKPGKTLAVLVGDTRIKKHYVPLTHYVLLTLLDTGFVMMEEVVK 257
Query: 140 FRGRRFQ 146
+ +
Sbjct: 258 IQHKMKT 264
>gi|291320088|ref|YP_003515346.1| type III restriction modification system:Methylase [Mycoplasma
agalactiae]
gi|290752417|emb|CBH40388.1| Type III restriction modification system:Methylase [Mycoplasma
agalactiae]
Length = 562
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 12/154 (7%)
Query: 14 NSIFEWKDKIIKGNSISVLEKL-------PAKSV--DLIFADPPYNL--QLNGQLYRPDH 62
N+ + + +I G + L+ L +++V D+I+ DPPYN L +
Sbjct: 85 NNDNKPANTLIIGENYDALKNLIAIERESQSETVNYDVIYIDPPYNTESSLTDGNNLSEK 144
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NL 121
V + + S + L +++LK +G ++V + ++
Sbjct: 145 DKVSSSKFIYRDKFSRTGWLNMLNERLRLAKQLLKEDGVIFVSIDDSEQAYLKVLMDEIF 204
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
V NP HE ++
Sbjct: 205 GEENFIACVPAILNPSGRQVNTEIALTHEYILIY 238
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 8/160 (5%)
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
+ K + +G++ L + T KP L+ ++
Sbjct: 355 MDGNKFKIYPKKRKNTWIFKTIIKGSSFNNKTGNKVLSSILKSDEFSTAKPVELIKLLIK 414
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRIASVQP 270
ILD + GSGT+G + RS+ + ++ I D+ +R+ +
Sbjct: 415 LHPNKDARILDFYAGSGTTGHAVMELNNEDGGNRSYTLVTNNENNIGTDVCYERLYRINN 474
Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
+ + + + L + L +
Sbjct: 475 GISTSNESNFDWIKKNKPYKSNLNVYNIEYYSTKLFDDNQ 514
>gi|291543314|emb|CBL16423.1| DNA modification methylase [Ruminococcus sp. 18P13]
Length = 167
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
AN M D + G KD K+HP+QKP ++L R++ T GD+++DP
Sbjct: 77 ANGKRHMIFDHFDWVRDG------KDIPKIHPSQKPISVLKRLIEIFTDEGDVVIDPCAC 130
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
SG++ A++L R G E+ +D+ A K++
Sbjct: 131 SGSTLRAARELGRHSYGFEVSKDFYTKACKQM 162
>gi|261881069|ref|ZP_06007496.1| DNA methylase N-4/N-6 [Prevotella bergensis DSM 17361]
gi|270332187|gb|EFA42973.1| DNA methylase N-4/N-6 [Prevotella bergensis DSM 17361]
Length = 736
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/279 (12%), Positives = 79/279 (28%), Gaps = 45/279 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+ + +++ +P +S+ PP+ + + +D + + + Y
Sbjct: 459 IRLGDCVQLIKDIPDESIGFSIFSPPF-------------AELYTYSDKLEDMGNSKDYK 505
Query: 83 AFTRAW---LLACRRVLKPNGTLWVIGSYHNIF--------------------------- 112
F A+ + RV+ + V I
Sbjct: 506 EFFMAFDFLVKELYRVMWSGRNIAVHCMDLPIQKSKEGFIGLRDFSGMIIKSFREAGFIY 565
Query: 113 --RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDA 170
R+ + + + + L+ +
Sbjct: 566 HSRVTIWKNPVTEMQRTKALGLLHKQVKKDSAMSRVGIPDYLLIFRKDGEHAHPVHCGID 625
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + + + + R + ++ H + R + + GD IL P
Sbjct: 626 VDTWQKYASPVWMDIDYSNTLNARAGREGSDEKHVCPLQLDTIKRAITLWSNEGDTILTP 685
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
F G G+ + L R IG E+K+ Y + A K +
Sbjct: 686 FLGIGSEVYQSILLNRKGIGFELKESYFNEAIKNCKKAE 724
>gi|145627987|ref|ZP_01783788.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae 22.1-21]
gi|144979762|gb|EDJ89421.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae 22.1-21]
Length = 202
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KPEAL+ RI+ +T DI+LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 3 KKPEALIKRIIELTTNESDIVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLK 62
Query: 267 S 267
Sbjct: 63 K 63
>gi|290971699|ref|XP_002668621.1| predicted protein [Naegleria gruberi]
gi|284082098|gb|EFC35877.1| predicted protein [Naegleria gruberi]
Length = 994
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 85/252 (33%), Gaps = 40/252 (15%)
Query: 23 IIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G+ + + P K S DL+ D PY + D
Sbjct: 684 LLYGDVLELANIFPKKVSYDLMICDLPYGVFK-------------------DSPYDVLFT 724
Query: 82 DAFTRAWLLACRRVLKPNG--TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
D + ++ ++ T G Y I ++ +++ ++
Sbjct: 725 DDQLKEFIDNLYQITPDTNFPTWIFFGEYKQIVKLQELIELKKGNA---VICIWVKNGRQ 781
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER--LRN 197
F +E+ + P+ + N Q S IC SE L++
Sbjct: 782 FGANFGTYKYESFLLCFPNKQ-------------VNIKPQGFSLSPFSICFPSETNFLKD 828
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ + + QKP +L+S ++ + I+LD G+ T+ A R+ I +E
Sbjct: 829 SNSRECNKGQKPLSLISWLVYQFSNVDGIVLDLCSGTATTAVAAVSYGRNSISLESNHGQ 888
Query: 258 IDIATKRIASVQ 269
+ A +R+ +
Sbjct: 889 FEHAAERLKLSE 900
>gi|109947857|ref|YP_665085.1| type II restriction-modification methyltransferase [Helicobacter
acinonychis str. Sheeba]
gi|109715078|emb|CAK00086.1| type II restriction-modification methyltransferase [Helicobacter
acinonychis str. Sheeba]
Length = 381
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 53/131 (40%), Gaps = 17/131 (12%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
++ L+++ +S+ I+ DPPYN + + Y + Y+ + +
Sbjct: 3 ALECLKRIEKESIQTIYIDPPYNTKSSNFEYE----------------DTHADYEKWIKE 46
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + VLK +G +++ + + + ++ N F + N + + +
Sbjct: 47 HLVLAKAVLKQSGCIFISIDDNQMAEVK-IIANEIFGVHNFLGTFITKQATRSNAKHINI 105
Query: 148 AHETLIWASPS 158
HE ++ + +
Sbjct: 106 THEYVLSYAKN 116
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G+ L + L T KP L+ +L+ ST +ILD F GSGT+
Sbjct: 254 NCLSVLDFYSRQGTRDLEKLGLKGLFKTPKPVELIKYLLLCSTPKDSVILDFFAGSGTTA 313
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 314 QAIIEVNKDYH 324
>gi|323956953|gb|EGB52681.1| DNA methylase [Escherichia coli H263]
Length = 172
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 87 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 144
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLG 272
R G+E++ + + + + +
Sbjct: 145 RRATGVELETERFEQTVREVQDLASQN 171
>gi|260892720|ref|YP_003238817.1| DNA methylase N-4/N-6 domain protein [Ammonifex degensii KC4]
gi|260864861|gb|ACX51967.1| DNA methylase N-4/N-6 domain protein [Ammonifex degensii KC4]
Length = 1050
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 20/188 (10%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G + L L + V ++ DPPYN + +Y+ ++
Sbjct: 470 LVHGENYQALRLLEGRYQEQVKCVYIDPPYNSPSSEIIYKNNYK--------------HS 515
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ L A + +L+ GT+ + H + + ++ + + + V +SNP
Sbjct: 516 TWATLMFERLRASKALLQKGGTIAIAIDDHEVVTLKALMPLVFPGEI-ETVVVRSNPAGR 574
Query: 140 FRGRRFQNAHETLIWASPSPKA--KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ F HE +++ K G + + E+ + R
Sbjct: 575 STPKGFSVQHEYVVFGWKGGKDAVVGRLQHTEDQVERYEEKDKNGAYEWVNFRKHGGFRR 634
Query: 198 KDGEKLHP 205
+ +P
Sbjct: 635 ESPRMFYP 642
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 178 VQMRSDWLIPICSGSERLRNKDG-EKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSG 235
G+ L N G K K L+ L S DI+LD F GSG
Sbjct: 731 TWWEKKEYSATDWGTRTLSNLFGVSKPFDYPKAVELVKDCLRVGSVAASDIVLDFFAGSG 790
Query: 236 TSGAVAKKLR------RSFIGIEMKQDYIDI 260
T+ +L R FI +E+ +Y D
Sbjct: 791 TTAHAVIELNREDSGQRKFILVEIG-EYFDT 820
>gi|261258281|ref|ZP_05950814.1| DNA methylase [Escherichia coli O157:H7 str. FRIK966]
Length = 294
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 209 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 266
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 267 RRATGVELETERFEQT 282
>gi|315932575|gb|EFV11507.1| DNA methylase family protein [Campylobacter jejuni subsp. jejuni
327]
Length = 336
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 176 EDVQMRSDWLIPICSG--SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ M+ W IP + ER+ ++ TQKPEALL RI+ +S+ I+ D G
Sbjct: 115 DGKPMKDVWAIPFINPVSIERIEVENNL----TQKPEALLQRIIKASSNENSIVFDYHLG 170
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
SGT+ A A KL+R ++G+EM + + + R+
Sbjct: 171 SGTTIATAHKLKRKWLGVEMGEHFYKVIIPRMKK 204
>gi|229584951|ref|YP_002843453.1| hypothetical protein M1627_1525 [Sulfolobus islandicus M.16.27]
gi|238620054|ref|YP_002914880.1| hypothetical protein M164_1611 [Sulfolobus islandicus M.16.4]
gi|228020001|gb|ACP55408.1| hypothetical protein M1627_1525 [Sulfolobus islandicus M.16.27]
gi|238381124|gb|ACR42212.1| hypothetical protein M164_1611 [Sulfolobus islandicus M.16.4]
Length = 55
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
++ DK+I G+S+ +L+++P S++LI PPY Q + +
Sbjct: 11 EKFLDKLIVGDSLKLLKEIPDNSINLIITSPPYFQQRDYE 50
>gi|153833514|ref|ZP_01986181.1| type III restriction-modification system methylation subunit
[Vibrio harveyi HY01]
gi|148870165|gb|EDL69106.1| type III restriction-modification system methylation subunit
[Vibrio harveyi HY01]
Length = 1030
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 18/134 (13%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I ++ L + DLI+ DPPYN LY+ ++
Sbjct: 468 TLIHSDNYQALNLIRDKYRNKADLIYIDPPYNTNSTPILYKNEYKR-------------- 513
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
++ + L +L +G V + + ++++L+ V NP
Sbjct: 514 SSWASLMANRLELSMSLLSDDGVKAVAIDDSEVMNLSKIMESLSDEHRLTRVTVVHNPKG 573
Query: 139 NFRGRRFQNAHETL 152
+ + F HE
Sbjct: 574 SIT-KDFNRTHEYC 586
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLR 245
G+ L + GEK K L+ R + ST K +I+D F GSGT+ +
Sbjct: 724 WGNSLLISMLGEKRFDFPKSINLVKRCIEISTQNKKSPLIIDYFAGSGTTAHAVIEHN 781
>gi|11499004|ref|NP_070238.1| modification methylase, type III R/M system [Archaeoglobus fulgidus
DSM 4304]
gi|2649165|gb|AAB89839.1| modification methylase, type III R/M system [Archaeoglobus fulgidus
DSM 4304]
Length = 969
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 9/243 (3%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ + + L R + V W F + + + P G + +
Sbjct: 550 FYSKSDNYLRRDLYRKRSLVDFKWTGFLNQGE--RNPPERTFFGKVLYPPKGQHFSLVQE 607
Query: 109 HNIFRIG-TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA-SPSPKAKGYTF 166
+ L+ W + FR + + E + A
Sbjct: 608 KVDKLLKEHFLRLKCKKCGAVYYWDEEESKEKFRNKILASKTEAFKYFDIKPETAVFGVT 667
Query: 167 NYDALKAANEDVQMRSDWLIPICSGSERLRNK----DGEKLHPTQKPEALLSRILVSSTK 222
D D ++ ++ DG K T+ E LL R++ S++
Sbjct: 668 KIDRCLNCGGDDWKVEYLTSDEVKITDNWKDIPSYSDGFK-FSTENSEILLKRVIESTSN 726
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
GD++LD F GSGT+ AVA+KLRR +IG+EM + + + R+ V ++
Sbjct: 727 EGDLVLDFFLGSGTTTAVAQKLRRKWIGVEMGEHFWSVVLPRMKKVLFYDKSGISKEKDV 786
Query: 283 RTE 285
R +
Sbjct: 787 REK 789
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 12 NQNSIFEWKDK-IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
+N + E D +IK + L L + + V I+ DPP+N +
Sbjct: 416 RENDLDEILDGVLIKSENFHALNLLLSKYYEKVQTIYIDPPFNKEQEADFLYK-----VG 470
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
D + + R +L G+++V Y+ + +L
Sbjct: 471 YKD--------ATWITMLENRIRLGRELLNERGSIFVRCDYNGNAYLKLLLN 514
>gi|269797512|ref|YP_003311412.1| DNA methylase N-4/N-6 domain protein [Veillonella parvula DSM 2008]
gi|269094141|gb|ACZ24132.1| DNA methylase N-4/N-6 domain protein [Veillonella parvula DSM 2008]
Length = 646
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLV 65
+++N+NS ++ I G+++ L L + I+ DPPYN +
Sbjct: 88 LDKNKNS----ENVYIIGDNLEALRHLLGSYIGKIKCIYIDPPYNTGEDFIYNDSFTFTA 143
Query: 66 DAVTD-------------SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
D + D + SS A+ F L+ R +L+ +G +++ +
Sbjct: 144 DDLVDRIGIDRQEAERILDLNGKSSHSAWLTFMYPRLVLARLLLREDGVIFISIDDNEYA 203
Query: 113 RIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ + + D+ + +++ N H +
Sbjct: 204 NLKQICDEIFGEENFQADVAVVANPGGRDYKNIAITNEHLLIY 246
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
+ K GY + KA + + + G+ E K L+ +
Sbjct: 358 ARKKKNGGYNIYEKSRKATTKAKSLWNGVGYRTEDGTRSFNELFEESYFDHPKSPELIKQ 417
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
L+ DI+LD F GS T+ + R +I +++
Sbjct: 418 CLIIGMSEDDIVLDFFSGSATTAEAIMQLNASDLGNRKYILVQL 461
>gi|328952980|ref|YP_004370314.1| hypothetical protein Desac_1276 [Desulfobacca acetoxidans DSM
11109]
gi|328453304|gb|AEB09133.1| hypothetical protein Desac_1276 [Desulfobacca acetoxidans DSM
11109]
Length = 167
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 19 WKDKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDS 71
WK+K+ G+++ +L ++ SVDLI+ DPP+N Q + + S + A D+
Sbjct: 5 WKNKLFFGDNLDILRNQIDTASVDLIYLDPPFNSQATYNILFAEKSGELAAAQITAFEDT 64
Query: 72 W 72
W
Sbjct: 65 W 65
>gi|297519367|ref|ZP_06937753.1| putative methyltransferase [Escherichia coli OP50]
Length = 66
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
II G++++ L+KLP +SVDLIFADPPYN+ N
Sbjct: 16 TIIHGDALAELKKLPTESVDLIFADPPYNIGKNFD 50
>gi|312622142|ref|YP_004023755.1| DNA methylase N-4/N-6 domain-containing protein
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202609|gb|ADQ45936.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 416
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ G +P P L ++ S T+ DI+LDPF GSGT A K R+ IG+++
Sbjct: 25 SIHGIHSYPAMMPAPLAEFLIQSFTRRNDIVLDPFCGSGTVLYEALKNGRNAIGVDINPL 84
Query: 257 YIDIATKRIA 266
I I+ +I
Sbjct: 85 AILISNVKIN 94
>gi|207110178|ref|ZP_03244340.1| type II adenine methyltransferase [Helicobacter pylori
HPKX_438_CA4C1]
Length = 87
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ +G+ VL + DLIFADPPY L +G L +V WDK +
Sbjct: 19 TLYQGDCNEVLPQF-ENQFDLIFADPPYFLSNDG-LSIQSGKIVSVNKGDWDKENGINGI 76
Query: 82 DAFTRAWLLAC 92
D F W+
Sbjct: 77 DEFNYQWINNA 87
>gi|321156644|emb|CBZ05912.1| DNA methyltransferase [Wolbachia endosymbiont of Drosophila
teissieri]
Length = 284
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 63/207 (30%), Gaps = 34/207 (16%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + + D+ DPPYN+ R D +++
Sbjct: 109 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 161
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 162 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 218
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+A Y + + + W
Sbjct: 219 LGRS------------DYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPI------- 259
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPG 224
LHPT KP L+ + +V+S++PG
Sbjct: 260 --HNSLHPTMKPVELMEKAIVNSSRPG 284
>gi|270639987|ref|ZP_06222113.1| modification methylase LlaFI [Haemophilus influenzae HK1212]
gi|270317361|gb|EFA28892.1| modification methylase LlaFI [Haemophilus influenzae HK1212]
Length = 127
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 32 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNESDIVLDYHLGSGT 83
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 84 TAAVAHKMNRQYIGIEQMDYIETLAVERLKK 114
>gi|294648628|ref|ZP_06726091.1| site-specific DNA-methyltransferase (adenine-specific)
[Acinetobacter haemolyticus ATCC 19194]
gi|292825504|gb|EFF84244.1| site-specific DNA-methyltransferase (adenine-specific)
[Acinetobacter haemolyticus ATCC 19194]
Length = 377
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 72/207 (34%), Gaps = 15/207 (7%)
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT--FNYD 169
+ + + N + + S K Y N D
Sbjct: 86 CYLKYFDFIFRDTNAQSSIRTRVMDAINSEYDFVSIDYTPISGKSKGKKTTLYYKGNNCD 145
Query: 170 ALKAANE-----DVQMRSDWLIPICSGSERLRN--KDGEKLHPT-QKPEALLSRILVSST 221
+ + + Q+ + L N K+G+ L P +KPE LL +I+ +T
Sbjct: 146 LIAWLKDVAVKKNGQLIKLEKLGTYWDGFPLNNLTKEGDVLFPNGKKPEQLLKKIIELAT 205
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
GDI+LD GSGT+ AVA K+ R +IGIE DI KR+ V ++
Sbjct: 206 DEGDIVLDYHLGSGTTCAVAHKMNRRWIGIEQMNYIEDITLKRLTKVIDGEQSGIS---- 261
Query: 282 KRTEPRVAFNLLVERGLIQPGQILTNA 308
+ V L + Q +
Sbjct: 262 -KAVNWQGGGSFVYFELKKYNQDFLDK 287
>gi|145630146|ref|ZP_01785928.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae R3021]
gi|144984427|gb|EDJ91850.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae R3021]
Length = 277
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
KPE L+S + + T P DI+LD F GSGT+ AVA K+ R +IGIE +A +
Sbjct: 75 FSNPKPETLISFFIKAITTPKDIVLDFFSGSGTTAAVAHKMNRQYIGIEQMDYIETLAVE 134
Query: 264 RIAS 267
R+
Sbjct: 135 RMKK 138
>gi|21234060|ref|NP_639637.1| hypothetical protein SCP1.62 [Streptomyces coelicolor A3(2)]
gi|21234290|ref|NP_639901.1| hypothetical protein SCP1.291c [Streptomyces coelicolor A3(2)]
gi|13620546|emb|CAC36584.1| hypothetical protein [Streptomyces coelicolor A3(2)]
gi|13620777|emb|CAC36817.1| hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 137
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNIS----ATVCADGTLISGTELG---SIHRVGAKV 338
P L++ LI+ G +LT Q A V ADG LI S + V
Sbjct: 45 PHGPLAELMQADLIKAGTVLTFHQRRAKRSGRAVVTADGQLIVDGHASPFPSPSKAAEAV 104
Query: 339 SGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
+G+ NGW W+ E +G ++ LR +
Sbjct: 105 TGN-VINGWTLWHVEGVGRT--LDDLRRELDS 133
>gi|317164414|gb|ADV07955.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 237
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 16 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNENDIVLDYHLGSGT 67
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 68 TAAVAHKMNRQYIGIEQMDYIETLAVERMKK 98
>gi|268601532|ref|ZP_06135699.1| type III restriction/modification system modification methylase
[Neisseria gonorrhoeae PID18]
gi|268585663|gb|EEZ50339.1| type III restriction/modification system modification methylase
[Neisseria gonorrhoeae PID18]
Length = 253
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 32 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNENDIVLDYHLGSGT 83
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 84 TAAVAHKMNRQYIGIEQMDYIETLAVERMKK 114
>gi|91791191|ref|YP_552141.1| DNA methylase N-4/N-6 [Polaromonas sp. JS666]
gi|91701072|gb|ABE47243.1| DNA methylase N-4/N-6 [Polaromonas sp. JS666]
Length = 355
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
N++G H P AL ++ ++ G +++DPF G T+ A+ R +IG E
Sbjct: 273 NREGLPNHGATFPLALAKFLVEYLSEAGQLVVDPFSGWFTTALAAELTGRRWIGCEKMLQ 332
Query: 257 YIDIATKRIASVQPLGNIEL 276
YI+ A +R L
Sbjct: 333 YIEGARRRFFDCDGYLEDYL 352
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 17/81 (20%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ G+ V ++ + V + PPY + AV++ Y
Sbjct: 62 LWGDCKDVFSQI-TEPVHCVITSPPYPIA--------KGRAYGAVSE--------VEYVD 104
Query: 84 FTRAWLLACRRVLKPNGTLWV 104
F L R L + +
Sbjct: 105 FICHALEPVVRRLAAGACVAL 125
>gi|154498712|ref|ZP_02037090.1| hypothetical protein BACCAP_02703 [Bacteroides capillosus ATCC
29799]
gi|150272252|gb|EDM99450.1| hypothetical protein BACCAP_02703 [Bacteroides capillosus ATCC
29799]
Length = 1073
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 17/140 (12%)
Query: 22 KIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I ++ L+ L + +V LI+ DPPYN + LY+
Sbjct: 467 LMIHSDNYQALKFLQNQYASTVKLIYIDPPYNTDASKILYKN--------------GYEH 512
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
++ + + L RR L G + V + + + + + N+
Sbjct: 513 SSWLSLMESRLAEGRRFLSDKGIIEVAIDDYELRYLNSCMDNVFGIGNAISNIAILTNPK 572
Query: 139 NFRGRRFQNAHETLIWASPS 158
AH+ + + +
Sbjct: 573 GRDQGFIAQAHDYTVIYAKN 592
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ G+ L N K + ++ D +LD F GSGT+G
Sbjct: 749 WYGERYDASSKGTNLLENIIPNNPFDYPKSLFTVEDNVIIGCNGDDTVLDYFAGSGTTGH 808
Query: 240 VAKK-------LRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R +I +EM + + R+ V +
Sbjct: 809 AVLDLNRTIDGSNRKYILVEMGTYFDTVTHPRMKKVVYSAD 849
>gi|223039764|ref|ZP_03610049.1| DNA methylase [Campylobacter rectus RM3267]
gi|222878956|gb|EEF14052.1| DNA methylase [Campylobacter rectus RM3267]
Length = 311
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/291 (17%), Positives = 92/291 (31%), Gaps = 52/291 (17%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G+S V++ L +SV I PP++ LY +S D +F A+
Sbjct: 14 IYNGDSCEVVKALNDESVGYIIYSPPFDS-----LYTYSNSDRDMGNSEKGEFMEHFAFL 68
Query: 83 AFTRAWLLACRRVLKPNGT----------------------------LWVIGSYHNIFRI 114
A +L R++ + ++ S I++
Sbjct: 69 AKELFRILKSGRLMSFHCMNLPTSKVRDGFIGIRDFRGELIRLFESVGFIFHSEVCIWKD 128
Query: 115 GTMLQN-----------------LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ Q ++ + D + P N + A
Sbjct: 129 PVIAQQRTKALGLLHKQLVKDSAMSRQGIPDYLVTMRKPGINAEPIEGGLKYYCGDGAPI 188
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN--KDGEKLHPTQKPEALLSR 215
+ K N + W+ S + L+ D ++ H ++ R
Sbjct: 189 ASKFDEEKGNLNRGSIEVWQRYASPVWMDINPSNTLSLKGSRDDEDEKHICPLQLDVIER 248
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
L + GD++ PF G G+ + K+ R IGIE+K Y ++A K
Sbjct: 249 ALQLWSNEGDVVFTPFLGIGSEVYQSLKMNRKGIGIELKNSYFNVAAKNCE 299
>gi|238762725|ref|ZP_04623694.1| DNA methylase N-4/N-6 domain protein [Yersinia kristensenii ATCC
33638]
gi|238699030|gb|EEP91778.1| DNA methylase N-4/N-6 domain protein [Yersinia kristensenii ATCC
33638]
Length = 729
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
II G + VL+ L V+ I+ DPPYN Y D+ + D
Sbjct: 158 HTIINGENYHVLKALTYTHRGKVNAIYIDPPYNTGAKDWKYNNDYV-------AGDDLYR 210
Query: 78 FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
+ A LL + +L P + L R+G +L+ + ++V
Sbjct: 211 HSKWLAMMERRLLLAKELLNPADSVLIATIDEKEYLRLGLLLEQVFPEAQIEMVT 265
>gi|301027609|ref|ZP_07190931.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
gi|299879262|gb|EFI87473.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
Length = 112
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 27 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 84
Query: 246 RSFIGIEMKQDYIDIA 261
R G+E++ + +
Sbjct: 85 RRATGVELETERFEQT 100
>gi|323186686|gb|EFZ72011.1| DNA methylase family protein [Escherichia coli RN587/1]
Length = 191
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 109 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALG 166
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ + +
Sbjct: 167 RRAIGVELETERFEQT 182
>gi|255523169|ref|ZP_05390140.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
P7]
gi|296186135|ref|ZP_06854540.1| DNA (cytosine-5-)-methyltransferase [Clostridium carboxidivorans
P7]
gi|255513037|gb|EET89306.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
P7]
gi|296049403|gb|EFG88832.1| DNA (cytosine-5-)-methyltransferase [Clostridium carboxidivorans
P7]
Length = 625
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/209 (13%), Positives = 70/209 (33%), Gaps = 27/209 (12%)
Query: 7 LAINENQNSIFEWKDKIIKGNSISVLEKL-------PAKSVDLIFADPPYNLQLNGQLYR 59
+ E ++ + II+G+++ L L + ++ I DPPYN +Y
Sbjct: 68 VKEKEIKSGNNNITNVIIEGDNLYALNTLLFTHGINDERQIN-IIIDPPYNTGNKDFIY- 125
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
D + D + + +F L R +L +G +++ + ++ +
Sbjct: 126 -----NDNYVNGEDTYR-HSKWISFMNKRLRLSRELLSSDGVIFISIDDNEQSQLK--ML 177
Query: 120 NLNFWILNDIVWRKSNPMPNFRG-------RRFQNAHETLIWASPSPKAKGYTFNYDA-- 170
+ + ++ + S N G ++ + E L+ + + Y
Sbjct: 178 CDDVFGEDNFINCISVKTKNASGASGGGEDKKLKKNIEYLLIYCKNRERCNLKAVYKEYP 237
Query: 171 -LKAANEDVQMRSDWLIPICSGSERLRNK 198
+ NE + + +E +
Sbjct: 238 LMNLINERREEGKQYDYRQVLINEGTKKY 266
>gi|110005015|emb|CAK99346.1| hypothetical n-6 adenine specific dna methyltransferase c-terminal
truncated protein [Spiroplasma citri]
Length = 162
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 3/154 (1%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+I G+++ ++ L SVDLI DPP YNL ++ + ++ +
Sbjct: 8 KLINGDALEFIKTLENDSVDLILTDPPYLYNLSKRENEQINENRISKSINKYINALYDNN 67
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+++F L + + + + I I + +L D +
Sbjct: 68 LHNSFYINTYLDEFYRISKTKFMLIWMNRQQII-IDYLDWVRKKDMLYDFILWNKTNPMP 126
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
+Q+ +I S + Y +Y++ K
Sbjct: 127 TNNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKN 160
>gi|261496854|ref|ZP_05993223.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261307471|gb|EEY08805.1| DNA methylase N-4/N-6 [Mannheimia haemolytica serotype A2 str.
OVINE]
Length = 411
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
KPE L+ +L +ST+P D++LD F GSGT+ AVA K R +IGIE+ +
Sbjct: 267 FDYPKPEKLIQFVLEASTEPYDLVLDSFLGSGTTAAVAHKTNRRYIGIEIGEHAKTHVVP 326
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
R+ V ++ + L G+ + +A G+++ + D
Sbjct: 327 RLKKVIEGEQGGIS-----KAVNWQGGGSFRFCEL---GEEVFDAFGSLNPNIRFD 374
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 14/124 (11%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
A V IF DPPYN + +D + + L R +L
Sbjct: 5 AGQVKCIFIDPPYNTKSAFT--------------HYDDNLEHSVWLSMMYPRLEILRDLL 50
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
+G++W+ + + ML + + + L +
Sbjct: 51 AEDGSIWITLDDNESHYLKIMLDEIFGRKNFISNLIWEKKRKPSFLGKVGKVTDNLFCYA 110
Query: 157 PSPK 160
+
Sbjct: 111 KNKN 114
>gi|157412223|ref|YP_001481566.1| putative DNA methyltransferase [Escherichia coli APEC O1]
gi|99867248|gb|ABF67893.1| putative DNA methyltransferase [Escherichia coli APEC O1]
Length = 416
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/268 (15%), Positives = 76/268 (28%), Gaps = 42/268 (15%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-----------------------SWDK 74
+ + L PPY L+ + A D + D
Sbjct: 126 EQIHLCLTSPPYLLRNSRDYGHGGGRGEQAYIDWLLRILEPIVKQLVPGASVALNITQDS 185
Query: 75 FS----SFEAYDAFTRAWL-----LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
F+ S Y L L L+ H + L + +
Sbjct: 186 FNRGRPSRSLYLERLTLALCDKLGLELMDRLQWVNRSKPPSPTHWACKQRVQLCSSYEPV 245
Query: 126 LNDIVWRKSNPMPNFRG-RRFQNAHETLIWA-----SPSPKAKGYTFNYDALKAANEDVQ 179
L N R + + H L A + Y + E
Sbjct: 246 LWFTNDASKVRSNNLRVLQPHSDQHLKLQAAGGENRTTFYGDGAYQLKSGSFGNKTEGTI 305
Query: 180 MRSDWLIPICSGSER----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
++ R + + G LH P L + ++ T+PGD+++DPF G
Sbjct: 306 PKNTLFYGNSCADTRFCHSIARELGFPLHGATSPTRLAAFLIEFLTEPGDLVVDPFAGLH 365
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATK 263
A++L R ++ + +++ I+
Sbjct: 366 KVPIAAERLGRRWLATDKIMEWLAISRN 393
>gi|303252375|ref|ZP_07338541.1| hypothetical protein APP2_1351 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307247683|ref|ZP_07529722.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|302648834|gb|EFL79024.1| hypothetical protein APP2_1351 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855786|gb|EFM87950.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 654
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 22/195 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+NE + + +I ++ L L + V I+ DPPYN +G +Y+ ++
Sbjct: 387 VLNELHDLDEKTNGLLIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTGEDGFIYKDNYK- 445
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+++ F + R++L G +V S ++ +L ++
Sbjct: 446 -------------HSSWNTFIFDRVETGRKLLNEQGVSFVSISDEEQDKLKFLLDDIFQG 492
Query: 125 -ILNDIVWRKSNPMPNFRGRRFQNAHETLI----WASPSPKAKGYTFNYDALKAANEDVQ 179
L + W + + N + H + + + + +++
Sbjct: 493 NYLGTVEWNSTKSVTNTALISVGHTHNYIHAKNLDYFKKNRVHFRLPDSIEGFSNSDNDP 552
Query: 180 MRSDWLIPICSGSER 194
P G ER
Sbjct: 553 RGVWKADPFQVGGER 567
>gi|254003154|ref|YP_003052620.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
gi|253987237|gb|ACT52093.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
Length = 413
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/293 (16%), Positives = 85/293 (29%), Gaps = 58/293 (19%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----------- 72
I G+ +V +L + L PPY L P+ W
Sbjct: 122 ILGSCDTVFSRL-DTPIHLCVTSPPYPLASQRAYGNPNEGDFV----DWLCRSIEPVVKN 176
Query: 73 -------------DKFSSFEAYDAFTRAWLLAC---------------RRVLKPNGTLWV 104
D F S + + LL KP G +
Sbjct: 177 LVNGGSICLNIGNDIFISGSPARSLYQERLLLALHDRLGLSLMDRLVWHNPSKPPGPVQ- 235
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW-----ASPSP 159
+ ++ R+ + + L + + H I A S
Sbjct: 236 ---WASLNRVQLNVAWEPVYWLTNN-PNAVRSDNRRVLQEHTERHLNFIRNGGIKARSSA 291
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL----HPTQKPEALLSR 215
Y A R+ +R + + + H P +L S
Sbjct: 292 SDGAYIKRIGAYSTETLGRIPRNVLTFGHACQDQRNYKQFAKNVGLPAHGAAMPLSLASF 351
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
++ ++P D+++DPF GS ++ A++L R ++ E +Y+ A+ R
Sbjct: 352 LIEFLSRPDDLVVDPFGGSFSTAKAAEQLGRRWLSTECMIEYVLGASVRFKEF 404
>gi|315657341|ref|ZP_07910223.1| adenine-specific DNA modification methyltransferase [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|315491813|gb|EFU81422.1| adenine-specific DNA modification methyltransferase [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 394
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%)
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + + + + + L + A + Y ++ +E
Sbjct: 221 WICAHPHPNAKPGLKYHAWRWSRAKVERDYANLEFQVRGRGAHRHLKIYTKIRNFHETAL 280
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
SG L+ L T KP LL ++ ++T PGD +LD F GSGT+G
Sbjct: 281 KDLVIGPSTISGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQ 340
Query: 240 VAKKLRRSFIGIEMKQDY 257
A R F+ I++++ +
Sbjct: 341 AAHTAGRRFVLIQLEETF 358
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 16/119 (13%)
Query: 40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
V +I+ DPPYN A D K + + A L R +L P+
Sbjct: 29 VQMIYIDPPYNTGNTF-----------AYHDRRAK----DEWLAMMHPLLATAREILTPD 73
Query: 100 GTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
G +++ ++ + + + L SN G HE ++ +
Sbjct: 74 GLIFISIDFNQLCELKLEMDRTFGTENLIGNFVWVSNLKGRQLGSGPAGTHEYILTYAR 132
>gi|208435262|ref|YP_002266928.1| type III restriction enzyme M protein [Helicobacter pylori G27]
gi|208433191|gb|ACI28062.1| type III restriction enzyme M protein [Helicobacter pylori G27]
Length = 475
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 22/127 (17%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ ++ NEN+ + +IK + L L +++D I+ DPPYN Q N +
Sbjct: 361 LEEEVKSLFNENEING-----TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFV 415
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y + ++ A L R++L G ++V + +
Sbjct: 416 YADNFKR--------------SSWLAMMENRLELARKLLNDKGAMFVSIDDNEQAYCKAL 461
Query: 118 LQNLNFW 124
+ +
Sbjct: 462 MDEVFNG 468
>gi|2735920|gb|AAC46044.1| Tsp45I methyltransferase [Thermus sp. YS45]
Length = 413
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+PT+K +L I+ + + GD++LDPF GSGT+ + L+R IGI+ + + T+
Sbjct: 335 YPTEKNLDMLKLIVQTGSNEGDLVLDPFAGSGTTLIASPLLKRRSIGIDASWEAVKAFTR 394
Query: 264 RIASVQPLGNIELTVLTGK 282
R+ P + +++
Sbjct: 395 RVLEDFPRLQHKFEIVSAF 413
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 18/203 (8%)
Query: 22 KIIKGNSISVLEKLP------AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD----- 70
G + VL + A V L++ DPPY + + V V+
Sbjct: 70 TYFLGENGQVLRWMLREPGGYAGKVQLVYIDPPYGTGQQFLVGGDETDRVATVSQPKNGQ 129
Query: 71 -SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILND 128
+D + F R L+ R ++ +G ++V F + +L +
Sbjct: 130 LGYDDTLDGPQFVEFLRERLILLRELMADSGLIFVHIDEKYGFEVKLILDEVFGRRNFVN 189
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANED--VQMRSDWLI 186
+ R ++ NF + F + + ++ S + Y +N A + E+
Sbjct: 190 HIARIASNPKNFSRKAFGSQKDMILVYSKTRD---YVWNESASPYSEEEIARLFPFVDEN 246
Query: 187 PICSGSERLRNKDGEKLHPTQKP 209
+ L K PT +P
Sbjct: 247 GERYTTNPLHAPGETKDGPTGRP 269
>gi|313145138|ref|ZP_07807331.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
gi|313130169|gb|EFR47786.1| adenine-specific DNA methylase [Helicobacter cinaedi CCUG 18818]
Length = 256
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 188 ICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ + R+K+ K H P+ L R++ + GDI+LDPF G+GTS A L R
Sbjct: 1 MWNDLSSPRSKNALK-HGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERD 59
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNI 274
FIG E+ ++ ++A + L +
Sbjct: 60 FIGFELNMEFYEVALTSLRQDSSLFDK 86
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 22/122 (18%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL----------- 51
+++S ++N+ +I +G+ + ++E+L S+ L PPY
Sbjct: 78 RQDSSLFDKNKYNIK-------QGDCLELVEELENNSLQLTITSPPYADLIHKVVDDRTK 130
Query: 52 -QLNGQLYRPDHSLVDAVTDSWDKF--SSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGS 107
+++ + F F++Y ++ K NG +WV+
Sbjct: 131 RHKKSAFVIDNNATTKIYSRDTRDFGNMDFDSYMNAVLQFMQKLYTKTKSNGYNVWVVKD 190
Query: 108 YH 109
Y
Sbjct: 191 YR 192
>gi|308064144|gb|ADO06031.1| Adenine-specific DNA methylase [Helicobacter pylori Sat464]
Length = 477
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 17/125 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
K+ +N S E +IK + L L +++D I+ DPPYN Q N +Y
Sbjct: 358 FKDLEEEIKNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYA 417
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ ++ + L R++L G ++V + + ++
Sbjct: 418 DNFKR--------------SSWLSMMSNRLELARKLLNDKGVMFVSIDDNEQAYLKALMD 463
Query: 120 NLNFW 124
+
Sbjct: 464 EVFNG 468
>gi|295087509|emb|CBK69032.1| DNA modification methylase [Bacteroides xylanisolvens XB1A]
Length = 322
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 85 TRAWLLACRRVLKPNGTLW----VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ WL R K G + + N ++ + K N
Sbjct: 142 MQEWL---RHEWKRTGLPFSKTNIACGVKNAATRKYFTGCHLWYYPPVDAFEKIVEYANL 198
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
G + ++ A+ + + W P +GSERL+ +
Sbjct: 199 YGDPKGVPYFSIDGKKSLTAAEWKKMRAKFFCEF----GVNNVWREPPLNGSERLK-EGN 253
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ +H QKP + I+ SS++ D+I +PF G + A KL R G E+ +D D
Sbjct: 254 KAIHFNQKPLKFMELIINSSSEEHDVIWEPFGGLFSGILAANKLNRMAYGAEINKDVFDY 313
Query: 261 ATKRI 265
A +R+
Sbjct: 314 AKQRL 318
>gi|326346320|gb|EGD70057.1| putative DNA methylase [Escherichia coli O157:H7 str. 1125]
Length = 92
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
M + ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++
Sbjct: 1 MTVQVPYTDVWTYKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVK 58
Query: 240 VAKKLRRSFIGIEMKQDYIDIA 261
A L R G+E++ + +
Sbjct: 59 AAMALGRRATGVELETERFEQT 80
>gi|317014762|gb|ADU82198.1| type III restriction-modification system: methylase [Helicobacter
pylori Gambia94/24]
Length = 475
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 22/127 (17%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ ++ NEN+ + +IK + L L +++D I+ DPPYN Q N +
Sbjct: 365 LEEEVKSLFNENEING-----TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFV 419
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y + ++ A L +L G ++V + +
Sbjct: 420 YADNFKR--------------SSWLAMMENRLELAHALLSDKGVMFVSIDDNEQAYCKAL 465
Query: 118 LQNLNFW 124
+ +
Sbjct: 466 MDEVFNG 472
>gi|115289081|gb|ABI85557.1| M.Hin1056ModP-5 [Haemophilus influenzae]
Length = 422
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 15/196 (7%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPY +P S
Sbjct: 222 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYY----FVKKKPQDSFGYNTNFK----- 272
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ--NLNFWILNDIVWRKS 134
+ F + LL + +L +G + + + +L + ++ +
Sbjct: 273 -LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILLDEIFGFENFIGNLPTIMN 331
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
N TL++A K+ Y F D + + + + +
Sbjct: 332 LKGNNDEYAFSGTHEYTLVFAKNKDKSTFYEFPIDEYEMLQDWEEDNIGFYKQGANLKST 391
Query: 195 LRNKDGEKLHPTQKPE 210
N EK P
Sbjct: 392 GVNAPREKRPNLFFPI 407
>gi|82544405|ref|YP_408352.1| DNA adenine methyltransferase encoded by prophage [Shigella boydii
Sb227]
gi|81245816|gb|ABB66524.1| putative DNA adenine methyltransferase encoded by prophage
[Shigella boydii Sb227]
gi|320184646|gb|EFW59442.1| putative DNA methylase [Shigella flexneri CDC 796-83]
gi|332094403|gb|EGI99452.1| modification methylase DpnIIB domain protein [Shigella boydii
3594-74]
Length = 194
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD+I D F GSG++ A L
Sbjct: 109 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLIADFFMGSGSTVKAALALG 166
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ + +
Sbjct: 167 RRAIGVELETERFEQT 182
>gi|297526226|ref|YP_003668250.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
gi|297255142|gb|ADI31351.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
Length = 338
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 44/100 (44%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D + S +R + P + ++++ T PG+ +LDP GSGT+ AK
Sbjct: 59 DISTTVWSFPKRGSWATHRGDYRGNWPPQMARALILAYTMPGETVLDPMIGSGTTCIEAK 118
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
L R+ IG+++ + + + R+ ++ + +
Sbjct: 119 LLGRNCIGVDINYNAVILTLHRLYWLEKYLEKQASTQEIF 158
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G++ + L+K+ + S+DL+ PPY + R + + E Y
Sbjct: 177 IYHGDARN-LDKISSNSIDLVATHPPY-----YNIIRYSRTKK--IPGDLSGARRLEEYL 228
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
A + RVLKP L ++ I + + +
Sbjct: 229 AMIQQVGKEAFRVLKPGRILGILIGDTRIHKHYVPITHH 267
>gi|188528158|ref|YP_001910845.1| Adenine-specific DNA methylase [Helicobacter pylori Shi470]
gi|188144398|gb|ACD48815.1| Adenine-specific DNA methylase [Helicobacter pylori Shi470]
Length = 480
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 17/125 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
K+ +N S E +IK + L L +++D I+ DPPYN Q N +Y
Sbjct: 358 FKDLEEEIKNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYA 417
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ ++ + L ++L G ++V + + ++
Sbjct: 418 DNFKR--------------SSWLSMMANRLELAHKLLNDKGVMFVSIDDNEQAYLKALMD 463
Query: 120 NLNFW 124
+ W
Sbjct: 464 EVFKW 468
>gi|229141871|ref|ZP_04270398.1| Adenine specific DNA methylase Mod-like protein [Bacillus cereus
BDRD-ST26]
gi|228641627|gb|EEK97931.1| Adenine specific DNA methylase Mod-like protein [Bacillus cereus
BDRD-ST26]
Length = 204
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 20 KDKIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +++G+++ +L K VD+++ DPPYN Y D + D +
Sbjct: 76 MNFLLEGDNLASLELLSKTHKGLVDVVYIDPPYNTGNTDFTYDDD------YVEKEDAYK 129
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ +F + L V+ +G L++
Sbjct: 130 -HSKWLSFMKRRLELAHEVMSNDGILFMSIDDKE 162
>gi|110678416|ref|YP_681423.1| modification methylase, putative [Roseobacter denitrificans OCh
114]
gi|109454532|gb|ABG30737.1| modification methylase, putative [Roseobacter denitrificans OCh
114]
Length = 97
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 21 DKIIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHS------LVDAVTDSWD 73
+ + G++++VL + +SVDLI+ DPP+N + + S ++A D+W
Sbjct: 3 NHLYYGDNLAVLRDSIADESVDLIYVDPPFNSNASYNVLFKGPSGNSSAAQIEAFDDTWS 62
Query: 74 KFSSFEA 80
EA
Sbjct: 63 WGDEAEA 69
>gi|323953705|gb|EGB49531.1| DNA methylase [Escherichia coli H263]
Length = 201
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 119 YTDVWTHKPVQFYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 176
Query: 246 RSFIGIEMKQDYIDIA 261
R IG+E++ +
Sbjct: 177 RRAIGVELETGRFEQT 192
>gi|312173963|emb|CBX82217.1| putative DNA adenine methylase [Erwinia amylovora ATCC BAA-2158]
Length = 130
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ + + G+ HP +KP L+ I+ SST+PGD++ D F GSG + A L
Sbjct: 52 YTDVWTFKPVASYPGK--HPCEKPAELMEHIITSSTRPGDVVADFFMGSGATVKAALTLG 109
Query: 246 RSFIGIEMKQDYIDIATKRI 265
R+ IG+E++++ I
Sbjct: 110 RTAIGVELEEERFLQTKAEI 129
>gi|319947991|ref|ZP_08022168.1| site-specific DNA-methyltransferase (adenine-specific) [Dietzia
cinnamea P4]
gi|319438337|gb|EFV93280.1| site-specific DNA-methyltransferase (adenine-specific) [Dietzia
cinnamea P4]
Length = 392
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G T KPEAL+ RI+ +T+PG++++D F GSGT+ A+ L R ++ +E D +
Sbjct: 322 GVDGFRTPKPEALMRRIVELATEPGELVVDLFAGSGTTAVAARALGRRWVVVERNPDTVH 381
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
+ L++ DPPYN Y + + + + + L+ R +L
Sbjct: 64 GTAQLVYLDPPYNRGGRFDSYHDNMPRL--------------EWLDYIESRLVVARDLLA 109
Query: 98 PNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
GT+WV R+ +L + + +SNP R F +H+ L+ +
Sbjct: 110 DTGTVWVHLDDAEAHRVRCLLDDVFGTDAFIADLTVESNPKGRQLDRFFAGSHDRLMVYA 169
Query: 157 PSPK 160
P+
Sbjct: 170 RDPE 173
>gi|298737028|ref|YP_003729558.1| type III restriction-modification system: methylase [Helicobacter
pylori B8]
gi|298356222|emb|CBI67094.1| type III restriction-modification system: methylase [Helicobacter
pylori B8]
Length = 470
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQL 57
+ K+ ++Q + E +IK + L L +++D I+ DPPYN Q N +
Sbjct: 356 IYFKDLEEEIKSQFNEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFV 415
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y + ++ + L +L G ++V + +
Sbjct: 416 YADNFKR--------------SSWLSMMENRLELAHALLSDKGVVFVSIDDNEQAYCKAL 461
Query: 118 LQNLNFW 124
+ +
Sbjct: 462 MDEVFNG 468
>gi|224438796|ref|ZP_03659651.1| putative RNA methylase [Helicobacter cinaedi CCUG 18818]
Length = 260
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ R+K+ K H P+ L R++ + GDI+LDPF G+GTS A L R F
Sbjct: 6 WNDLSSPRSKNALK-HGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERDF 64
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNI 274
IG E+ ++ ++A + L +
Sbjct: 65 IGFELNMEFYEVALTSLRQDSSLFDK 90
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 22/122 (18%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL----------- 51
+++S ++N+ +I +G+ + ++E+L S+ L PPY
Sbjct: 82 RQDSSLFDKNKYNIK-------QGDCLELVEELENNSLQLTITSPPYADLIHKVVDDRTK 134
Query: 52 -QLNGQLYRPDHSLVDAVTDSWDKF--SSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGS 107
+++ + F F++Y ++ K NG +WV+
Sbjct: 135 RHKKSAFVIDNNATTKIYSRDTRDFGNMDFDSYMNAVLQFMQKLYTKTKSNGYNVWVVKD 194
Query: 108 YH 109
Y
Sbjct: 195 YR 196
>gi|159044649|ref|YP_001533443.1| hypothetical protein Dshi_2105 [Dinoroseobacter shibae DFL 12]
gi|157912409|gb|ABV93842.1| hypothetical protein Dshi_2105 [Dinoroseobacter shibae DFL 12]
Length = 226
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 21 DKIIKGNSISVLEKL---PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G + LE L +D+I+ DPPYN + Y + D +
Sbjct: 140 HTVINGENFHALEALTYTHRGKIDVIYIDPPYNSGASDWKY------NNKYVGDEDVYR- 192
Query: 78 FEAYDAFTRAWLLACRRVLKPNG 100
+ AF L R++LKP+G
Sbjct: 193 HSKWLAFMERRLQVARQLLKPSG 215
>gi|237750645|ref|ZP_04581125.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
gi|229373735|gb|EEO24126.1| adenine-specific DNA methylase [Helicobacter bilis ATCC 43879]
Length = 279
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 41/109 (37%)
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
+ + A N H P+ L R++ + GD
Sbjct: 1 MDKKSKDAFNGLSTQEWAKNSRSVWNDLSSPRSKNALKHGATFPQKLSDRVISLYSTKGD 60
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
I+LDPF G+GTS A L R FIG E+ ++ ++A + L +
Sbjct: 61 IVLDPFLGTGTSARSALSLERDFIGFELNMEFYEVALTSLRQDSSLFDK 109
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 22/122 (18%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNL----------- 51
+++S ++N+ +I +G+ + ++E+L S+ L PPY
Sbjct: 101 RQDSSLFDKNKYNIK-------QGDCLELVEELENNSLQLTITSPPYADLIHKVVDDRTK 153
Query: 52 -QLNGQLYRPDHSLVDAVTDSWDKF--SSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGS 107
+++ + F F++Y ++ K NG +WV+
Sbjct: 154 RHKKSAFVIDNNATTKIYSRDTRDFGNMDFDSYMNAVLQFMQKLYTKTKSNGYNVWVVKD 213
Query: 108 YH 109
Y
Sbjct: 214 YR 215
>gi|308271076|emb|CBX27686.1| hypothetical protein N47_H25080 [uncultured Desulfobacterium sp.]
Length = 1037
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 29/219 (13%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I G++ L L V++++ DPPYN N LY+ +
Sbjct: 466 LLIHGDNFQALNLLQERYRGQVNIVYIDPPYNTSENSFLYKNQYK--------------H 511
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPM 137
++ + + + N L + + L F + + P
Sbjct: 512 SSWLTMVESRVRMAVDAMSDNAVLCSAIDDFELPYLENALDQVFGFENRLGNLAIEIKPS 571
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+HE +++ + F + G E +
Sbjct: 572 GRTNDNYLATSHEYILFYAKDYAKAKIDFFP---------LTEEQVAEYSEGDGGESYKW 622
Query: 198 KDGEKLHPTQKPEA--LLSRILVSSTKPGDIILDPFFGS 234
+D + PE + + + G+ + PF G+
Sbjct: 623 RDFLRTGGFSTPEERPNSYYFIYYNPETGEAGVKPFEGA 661
>gi|218961397|ref|YP_001741172.1| Modification methylase, type III R/M system [Candidatus Cloacamonas
acidaminovorans]
gi|167730054|emb|CAO80966.1| Modification methylase, type III R/M system [Candidatus Cloacamonas
acidaminovorans]
Length = 998
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 58/345 (16%), Positives = 106/345 (30%), Gaps = 70/345 (20%)
Query: 22 KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN----GQLYRPDHSLVD-------- 66
+IK + L + + + I+ DPP+N + + + D +
Sbjct: 477 LLIKSENWQALNTILPKFKEQIQTIYIDPPFNKEQDADYLYNVKYKDSTWASLLENRLSL 536
Query: 67 ---------------AVTDSW--DKFSSFEAY-DAFTRAWLLACRRVLKPNGTLWVIGSY 108
+W ++ Y D F ++ +K G + +
Sbjct: 537 AKNIMKDSASIFVRCDYNGNWVLRPVMNYIFYEDNFRNEIIVNKSVRMKTEGKVLLSWHD 596
Query: 109 HNIFRIGT-----------------MLQNLNFWILNDIVWRKSNPMPNF-------RGRR 144
+ DIV M + +G
Sbjct: 597 VILCYCKNSNNVFFCHITENREKQEWRALDMEGEKWDIVPNDMINMFSPNNLKYDEKGNV 656
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDV---------QMRSDWLIPICSGSERL 195
A L + + + K N+ + QM +I +
Sbjct: 657 LSRAKIILGKEIIPRQGRRFPNQVIINKMENDGLLRYSSRGNPQMLKPDIIYLTDDWTGF 716
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
PT+ E LL R++ S++ +I++D F GSGT+ AVA+KL R +IGIEM +
Sbjct: 717 YGYSFNWDFPTENSEILLKRVIESTSDERNIVMDFFLGSGTTTAVAQKLGRKWIGIEMGE 776
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
+ + R+ V + K + + +N G Q
Sbjct: 777 HFWSVVMPRMKKVLFYDKSGI----SKEKDVQEKYNEHKAGGFFQ 817
>gi|281420500|ref|ZP_06251499.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
gi|281405273|gb|EFB35953.1| adenine specific DNA methylase Mod [Prevotella copri DSM 18205]
Length = 818
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+ ++ + +L L + VD I+ DPPYN Y + D D +
Sbjct: 132 HTLIEADNFHALQLLAYLYPQQVDCIYIDPPYNSGATDWKYNNN------YVDGNDSYR- 184
Query: 78 FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
+ A + LL +++L P N + V +G +L+ + +V
Sbjct: 185 HSKWLAMMESRLLLAKKLLNPKNSVMIVTIDEKEYLHLGCLLEEMFPEANIQMVT 239
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS--TKPGDII 227
G+ ++ GEK K + + P +I
Sbjct: 428 DDDTLRPRRVWVDKLHNASSYGTLLIKKFLGEKRFDFPKSLYAVHDAIRFFVANNPNALI 487
Query: 228 LDPFFGSGTSGAVAKKLR------RSFIGIEMK 254
LD F GSGT+ L R I +
Sbjct: 488 LDFFSGSGTTLHAVNLLNKEDGGHRRCIMVTNN 520
>gi|213855633|ref|ZP_03383873.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
M223]
Length = 171
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLY 58
+ N+LA N+N + + + G+++ VL L +VD+I+ DPPYN +G +Y
Sbjct: 95 EHNTLAENKNSH------NLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVY 147
>gi|256019214|ref|ZP_05433079.1| site-specific DNA-methyltransferase, component of type III
restriction-modification system [Shigella sp. D9]
gi|332280320|ref|ZP_08392733.1| site-specific DNA-methyltransferase [Shigella sp. D9]
gi|332102672|gb|EGJ06018.1| site-specific DNA-methyltransferase [Shigella sp. D9]
Length = 182
Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
K+ +I+G+++ VL+ L V LI+ DPPYN + + +
Sbjct: 88 DWDNTKNLMIEGDNLEVLKLLQKSYAGKVKLIYIDPPYNTGKDFVYSDNFQDNMKNYLEM 147
Query: 72 WDKFSS 77
+
Sbjct: 148 TGQTED 153
>gi|304436350|ref|ZP_07396326.1| methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370619|gb|EFM24268.1| methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 657
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 17/129 (13%)
Query: 40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
V I+ DPPYN + Y DKF + ++ F + L R++L+ +
Sbjct: 196 VKCIYIDPPYNTGEDEFSYN-------------DKF-NHSSWLTFMKNRLDFARKMLRED 241
Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWAS 156
G ++V +H + ++ + + P + E +++ +
Sbjct: 242 GAIFVHVDHHELGYTNVLMDEIFDVENKVQIIAVKTASPAGFKTVNPGPIDVTEYILFYT 301
Query: 157 PSPKAKGYT 165
+ + +
Sbjct: 302 KNKQMFRFK 310
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
Y+ + ++ SD+ I + + G KL +KPE L+ +I ST P
Sbjct: 431 YSNKMQEIDGKKTVTELLSDFWSHISWAG--IAREGGVKLKNGKKPERLIKQIFDISTDP 488
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
GDI+LD GSGT+ AVA K+ +IG E
Sbjct: 489 GDIVLDYHLGSGTTCAVAHKMGLQYIGCE 517
>gi|256028672|ref|ZP_05442506.1| DNA methylase N-4/N-6 domain-containing protein [Fusobacterium sp.
D11]
Length = 251
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 14/197 (7%)
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
W + A D+FT W ++ K + + ++ ++ + ++ +
Sbjct: 50 QWVTINRIRAIDSFTHIWWISNSDYPKADNRRILRPYSKSMKKLLESGKYNFGKRPSEHI 109
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ + + +G N E + Y+ + +N+
Sbjct: 110 ISEKGFLTDNQGSISHNILELEQIDEKKEFRQPYSMFSISNTKSNDFFT----------- 158
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
+ K G HP + P L S + T GD++LDPF GS T+G A+K R +I
Sbjct: 159 ---KTCKKRGLVPHPARMPLELASFFINFLTDEGDLVLDPFGGSNTTGFCAEKQNRKWIS 215
Query: 251 IEMKQDYIDIATKRIAS 267
IE +Y + R
Sbjct: 216 IEANIEYGKQSIIRFEE 232
>gi|126734814|ref|ZP_01750560.1| adenine specific DNA methylase MOD [Roseobacter sp. CCS2]
gi|126715369|gb|EBA12234.1| adenine specific DNA methylase MOD [Roseobacter sp. CCS2]
Length = 574
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 17/162 (10%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRP 60
+ S E ++ + + +IKG+++ L+ L + V ++ DPP+N +
Sbjct: 31 EKSYHAQERKSEGDIFDNVLIKGDNLLALKALEQDYSGLVKCVYIDPPFNTGNAFE---- 86
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+D + R L RR+L+ +G L + +L
Sbjct: 87 ----------HYDDGVEHSIWLNLMRERLEILRRLLRRDGFLCAHIDDSEGHYLKVLLDE 136
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ P ++ + H+ + +
Sbjct: 137 VFGRENYQTTIYLQVRYPQKTLKQDMSYHKQIEMIHIYRNSF 178
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R++ G + +KPE LL +IL + D+ILD F GSGT+ AVA K++R +I +E+ +
Sbjct: 331 RHEGGVEFRSGKKPEVLLQKILTHFSDENDLILDSFAGSGTTAAVAHKMKRKWITVEIGE 390
Query: 256 DYIDIATKRIA 266
R+A
Sbjct: 391 HCETHVMPRLA 401
>gi|308062653|gb|ADO04541.1| Adenine-specific DNA methylase [Helicobacter pylori Cuz20]
Length = 477
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 17/127 (13%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ K+ +N S E +IK + L L +++D I+ DPPYN Q N +
Sbjct: 356 LYFKDLEEEIKNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFI 415
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y + ++ + L ++L G ++V + + T+
Sbjct: 416 YADNFKR--------------SSWLSMMSNRLELAHKLLNDKGVMFVSIDDNEQAYLKTL 461
Query: 118 LQNLNFW 124
+ +
Sbjct: 462 MDEVFNG 468
>gi|258646417|ref|ZP_05733886.1| DNA (cytosine-5-)-methyltransferase [Dialister invisus DSM 15470]
gi|260403820|gb|EEW97367.1| DNA (cytosine-5-)-methyltransferase [Dialister invisus DSM 15470]
Length = 324
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 183 DWLIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
I + R +D + + H L++R L T P DI+LDPF G+ VA
Sbjct: 230 WMDIRQSNTLNRTAARDEKDERHICPLQLDLIARCLELWTNPNDIVLDPFASIGSVPIVA 289
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
++ R +G E+K+ Y A + + +
Sbjct: 290 LQMGRRTMGFELKESYFKQAVLNCQKEENHDDRNI 324
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+SI +L+ LP + PP+ D L ++ D D+F Y
Sbjct: 14 LYNGDSIEILKGLPDHCIHYAIFSPPF--SSLYTYSNSDRDLGNSTGD--DQF-----YQ 64
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY 108
F RV+ P + V
Sbjct: 65 HFLFLV-KELARVIMPGRLVSVHCMD 89
>gi|291622002|emb|CAX65035.1| gp54 protein [Vibrio phage VP58.5]
Length = 216
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D + ++ G+ HP +KP L+ I+ +S + G ++LDPF GSG +
Sbjct: 124 DVPYTDVWDFDPVQYYPGK--HPCEKPLPLMRHIVSTSAREGMVVLDPFMGSGATAKACI 181
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
+L F+G+EM D K +A +
Sbjct: 182 ELGCHFVGVEMDDDIFSATAKSLAEYKTEEEQ 213
>gi|239616522|ref|YP_002939844.1| DNA methylase N-4/N-6 [Kosmotoga olearia TBF 19.5.1]
gi|239505353|gb|ACR78840.1| DNA methylase N-4/N-6 [Kosmotoga olearia TBF 19.5.1]
Length = 89
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 23 IIKGNSISVLE-KLPAKSVDLIFADPPYNLQLNGQLYRPDHSL--VDAVTDSWDKFSSFE 79
I KG+ I V+ + +++DLI+ADPPYNL + + + + WD + +
Sbjct: 6 IYKGDCIKVMREHIKDENIDLIYADPPYNLSGKSLNLINNKTGGPFYKMNEDWDTW-DYN 64
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV 104
Y FT W + L + +V
Sbjct: 65 EYVEFTENWFVMLPEKLDKKSSNFV 89
>gi|7465428|pir||A64691 type III restriction enzyme M protein - Helicobacter pylori
(strain 26695)
Length = 474
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 17/106 (16%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+IK + L L +++D I+ DPPYN Q N +Y +
Sbjct: 377 TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKR-------------- 422
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
++ + L R++L G ++V + + ++ +
Sbjct: 423 SSWLSMMENRLELARKLLNDKGAMFVSIDDNEQAYLKVLMDEVFNG 468
>gi|227874635|ref|ZP_03992798.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Mobiluncus mulieris ATCC 35243]
gi|227844844|gb|EEJ54990.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Mobiluncus mulieris ATCC 35243]
Length = 458
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
L V +I+ DPPYN A D+ DK +A+ A + L+ R
Sbjct: 91 LVKGQVKMIYIDPPYNTGNTF-----------AYHDARDK----DAWAAMMQPRLVLARE 135
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN----AHE 150
L+ +G +++ + + T+ + + + N +GR+ N HE
Sbjct: 136 ALRDDGLIFISIDINEFAELKTLCDRVFG---AENFVANFVWVSNLKGRQLGNGPAGTHE 192
Query: 151 TLIWASP 157
++ +
Sbjct: 193 YILCYAR 199
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ T KP LL+ +L +++ PGD++LD F GSG+ G A R FI +++
Sbjct: 367 IFETPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQL 417
>gi|289549055|ref|YP_003474043.1| DNA methylase N-4/N-6 domain protein [Thermocrinis albus DSM 14484]
gi|289182672|gb|ADC89916.1| DNA methylase N-4/N-6 domain protein [Thermocrinis albus DSM 14484]
Length = 841
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
T+ E LL R++ S++ GD+++D F GSGT+ AVA KL+R +IG+EM + + +
Sbjct: 636 GFKTENSEILLKRVIESTSNEGDLVMDFFLGSGTTTAVAHKLKRKWIGVEMGEHFYTVVL 695
Query: 263 KRIASVQPLGNIELTVLTGKRTE 285
R+ V ++ + +
Sbjct: 696 PRMKKVLAYDKSGISKEKDVKEK 718
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 60/192 (31%), Gaps = 21/192 (10%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSL 64
++ N + W +IK + L + + V I+ DPP+N + + +
Sbjct: 368 LFDDLDNELDGW---LIKSENYQALNTILPKFKEKVQTIYIDPPFNKEQDADYFYSVKYK 424
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+ L R +L+ G+++V Y+ + ++ +
Sbjct: 425 -------------DATWITMLENRLRLARDLLRDTGSIFVRCDYNGNMYVRLLMNEIFGE 471
Query: 125 --ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
N+IV ++ P G+ +++ + + Y K +
Sbjct: 472 ENFRNEIVVKRGAPKSAMFGQFEGVKSIGVMYDNIFWYSSNPETRYHGFKIPIKKKGGYW 531
Query: 183 DWLIPICSGSER 194
+ ER
Sbjct: 532 STFYDMKPSGER 543
>gi|218883796|ref|YP_002428178.1| DNA adenine modification methylase [Desulfurococcus kamchatkensis
1221n]
gi|218765412|gb|ACL10811.1| DNA adenine modification methylase [Desulfurococcus kamchatkensis
1221n]
Length = 317
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D + S +R + P + ++ + PGDI+LDP GSGT+ AK
Sbjct: 45 DSSSTVWSFPKRGTWATHRGDYRGNWPPQVARLLIERYSNPGDIVLDPMIGSGTTCIEAK 104
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQ------PLGNIELTVLTGKRTEPRVAFNL 292
L R+ IG+++ + + + R+ ++ P + + +R +
Sbjct: 105 LLGRNCIGVDISYEAVILTLHRLYWLEKTLENPPNDAGSIDLENARRAVVEIYHGD 160
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I G++ L ++ +++DL+ PPY + V + SS E Y
Sbjct: 156 IYHGDARR-LSRVRDETIDLVITHPPYFNIIKYSSR---------VDGDLSRASSLEEYL 205
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ RVLKP G L ++ I + + +
Sbjct: 206 KWFNEATGEIYRVLKPGGHLGILIGDTRIRKYYVPISHH 244
>gi|284106587|ref|ZP_06386264.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
WGA-A3]
gi|283830060|gb|EFC34333.1| DNA methylase N-4/N-6 domain protein [Candidatus Poribacteria sp.
WGA-A3]
Length = 151
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 13/122 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ G++ +L +L +S+ PPY + + SS E Y
Sbjct: 18 ILLGDTREILPQLETRSIQCCVTSPPYWGLRDYDHSAQIGTE-----------SSPEEYV 66
Query: 83 AFTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
RR L +GT W V Y G N ++ R++ +P+
Sbjct: 67 ENLVRIFREVRRALTDDGTFWLNVGDGYARNGGTGNCGPNAQVGNTKKLIQRRNCTVPDC 126
Query: 141 RG 142
G
Sbjct: 127 WG 128
>gi|108563738|ref|YP_628054.1| type III restriction enzyme M protein [Helicobacter pylori HPAG1]
gi|107837511|gb|ABF85380.1| type III restriction enzyme M protein [Helicobacter pylori HPAG1]
Length = 474
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 17/117 (14%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
++Q + E +IK + L L +++D I+ DPPYN Q N +Y +
Sbjct: 370 KSQFNEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYADNFKR--- 426
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
++ A L +L G ++V + ++ +
Sbjct: 427 -----------SSWLAMMENRLELAHALLNDKGVMFVSIDDNEQAYCKVLMDEVFNG 472
>gi|315654735|ref|ZP_07907641.1| adenine-specific DNA modification methyltransferase [Mobiluncus
curtisii ATCC 51333]
gi|315491199|gb|EFU80818.1| adenine-specific DNA modification methyltransferase [Mobiluncus
curtisii ATCC 51333]
Length = 394
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 51/135 (37%)
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + + + + + L + A + Y ++ +E
Sbjct: 221 WICAHPHPNAKPGLRYHAWRWSRAKVERDYADLEFQVRGRGAHRHLKIYTKIRNFHETAL 280
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
SG L+ L T KP LL ++ ++T PGD +LD F GSGT+G
Sbjct: 281 KDLVIGPSTISGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQ 340
Query: 240 VAKKLRRSFIGIEMK 254
A R F+ I+++
Sbjct: 341 AAHTAGRRFVLIQLE 355
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 20/147 (13%)
Query: 16 IFEWK--DKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +++ + +++ ++ L L + V +I+ DPPYN A D
Sbjct: 1 MDDFREGNWLLRADAAVGLRALHQAGQRVQMIYIDPPYNTGNTF-----------AYHDR 49
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
K + + A L R +L P+G +++ ++ + + + L
Sbjct: 50 RAK----DEWLAMMHPLLATAREILTPDGLIFISIDFNQLCELKLEMDRTFGTENLIGNF 105
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASP 157
SN G HE ++ +
Sbjct: 106 VWVSNLKGRQLGAGPAGTHEYILTYAR 132
>gi|304390085|ref|ZP_07372039.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326567|gb|EFL93811.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 394
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 51/135 (37%)
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + + + + + L + A + Y ++ +E
Sbjct: 221 WICAHPHPNAKPGLKYHAWRWSRAKVERDYADLEFQVRGRGAHRHLKIYTKIRNFHETAL 280
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
SG L+ L T KP LL ++ ++T PGD +LD F GSGT+G
Sbjct: 281 KDLVIGPSTISGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQ 340
Query: 240 VAKKLRRSFIGIEMK 254
A R F+ I+++
Sbjct: 341 AAHTAGRRFVLIQLE 355
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 20/147 (13%)
Query: 16 IFEWK--DKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +++ + +++ ++ + L L + V +I+ DPPYN A D
Sbjct: 1 MDDFREGNWLLRADAAAGLRALHQAGQRVQMIYIDPPYNTGNTF-----------AYHDR 49
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
K + + A L R +L P+G +++ ++ + + + L
Sbjct: 50 RAK----DEWLAMMHPLLATAREILTPDGLIFISIDFNQLCELKLEMDRTFGTENLIGNF 105
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASP 157
SN G HE ++ +
Sbjct: 106 VWVSNLKGRQLGAGPAGTHEYILTYAR 132
>gi|297380019|gb|ADI34906.1| Adenine-specific DNA methylase [Helicobacter pylori v225d]
Length = 470
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 17/127 (13%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQL 57
+ K+ +N S E +IK + L L +++D I+ DPPYN Q N +
Sbjct: 356 LYFKDLEEEIKNLFSEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFI 415
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y + ++ + L ++L G ++V + + T+
Sbjct: 416 YADNFKR--------------SSWLSMMDNRLELAHKLLNDKGVIFVSIDDNEQAYLKTL 461
Query: 118 LQNLNFW 124
+ +
Sbjct: 462 MDEVFNG 468
>gi|307701299|ref|ZP_07638320.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
gi|307613460|gb|EFN92708.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
Length = 454
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
L V +I+ DPPYN A D+ DK +A+ A + L+ R
Sbjct: 87 LVKGQVKMIYIDPPYNTGNTF-----------AYHDARDK----DAWAAMMQPRLVLARE 131
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN----AHE 150
L+ +G +++ + + + + + + N +GR+ N HE
Sbjct: 132 ALRDDGLVFISIDINEFAELKALCDRVFG---AENFVANFVWVSNLKGRQLGNGPAGTHE 188
Query: 151 TLIWASP 157
++ +
Sbjct: 189 YILCYAR 195
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ T KP LL+ +L +++ PGD++LD F GSG+ G A R FI +++
Sbjct: 363 IFETPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQL 413
>gi|306817921|ref|ZP_07451659.1| type III restriction-modification system methylation subunit
[Mobiluncus mulieris ATCC 35239]
gi|304649264|gb|EFM46551.1| type III restriction-modification system methylation subunit
[Mobiluncus mulieris ATCC 35239]
Length = 475
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
L V +I+ DPPYN A D+ DK +A+ A + L+ R
Sbjct: 108 LVKGQVKMIYIDPPYNTGNTF-----------AYHDARDK----DAWAAMMQPRLVLARE 152
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN----AHE 150
L+ +G +++ + + + + + + N +GR+ N HE
Sbjct: 153 ALRDDGLVFISIDINEFAELKALCDRVFG---AENFVANFVWVSNLKGRQLGNGPAGTHE 209
Query: 151 TLIWASP 157
++ +
Sbjct: 210 YILCYAR 216
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ T KP LL+ +L +++ PGD++LD F GSG+ G A R FI +++
Sbjct: 384 IFETPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQL 434
>gi|298346155|ref|YP_003718842.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
43063]
gi|298236216|gb|ADI67348.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
curtisii ATCC 43063]
Length = 394
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%)
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ + + + + + L + + Y ++ +E
Sbjct: 221 WICAHPHPNAKPGLKYHAWRWSRAKVERDYADLEFQVRGRGEHRHLKIYTKIRNFHETAL 280
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
SG L+ L T KP LL ++ ++T PGD +LD F GSGT+G
Sbjct: 281 KDLVIGPSTISGQRELQRLGLGGLFETPKPTKLLQVLIEAATSPGDTVLDFFAGSGTTGQ 340
Query: 240 VAKKLRRSFIGIEMKQDY 257
A R F+ I++++ +
Sbjct: 341 AAHTTGRRFVLIQLEETF 358
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 20/147 (13%)
Query: 16 IFEWK--DKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ +++ + +++ ++ + L L + V +I+ DPPYN A D
Sbjct: 1 MDDFREGNWLLRADAATGLRALHQAGQRVQMIYIDPPYNTGNTF-----------AYHDR 49
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIV 130
K + + A L R +L P+G +++ ++ + + + L
Sbjct: 50 RAK----DEWLAMMHPLLATAREILTPDGLIFISIDFNQLCELKLEMDRTFGTENLIGNF 105
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASP 157
SN G HE ++ +
Sbjct: 106 VWVSNLKGRQLGAGPAGTHEYILTYAR 132
>gi|193064388|ref|ZP_03045470.1| DNA methylase N-4/N-6 domain protein [Escherichia coli E22]
gi|192929050|gb|EDV82662.1| DNA methylase N-4/N-6 domain protein [Escherichia coli E22]
Length = 124
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R +G+E++ + +
Sbjct: 57 HPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELESERFNQT 114
>gi|58865225|emb|CAI52508.1| DNA-methyltransferase [Geobacillus stearothermophilus]
Length = 381
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
S + + K+HP+ KP L I+ TK + +LD F G G +
Sbjct: 122 CSVINTRYPTQGKEGYAHHIRKVHPSPKPPQLTKEIISFFTKENEWVLDYFMGVGGTLLG 181
Query: 241 AKKLRRSFIGIEMKQDYID 259
A R IGI++ YI+
Sbjct: 182 ASLCNRRAIGIDLNGFYIE 200
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 24 IKGNSISVLEK--------LPAKSVDLIFADPPYN-----LQLNGQLYRPDHSLVDAVTD 70
I+G++I +L L + V L+ DPPY + + + S TD
Sbjct: 217 IQGDAIEILANKQSLISDILKGEKVSLVLIDPPYGDMMSRKKTGEAIKKKQDSSATPFTD 276
Query: 71 SWDKFSSFE--AYDAFTRAWLLACRRVLKPNGTLWVIG 106
S + E + + + + LK G + +
Sbjct: 277 SPKDLGNMEAADFYKNLKNSVQNSLKFLKKGGHVVIFI 314
>gi|59711656|ref|YP_204432.1| putative DNA methylase [Vibrio fischeri ES114]
gi|59479757|gb|AAW85544.1| putative DNA methylase [Vibrio fischeri ES114]
Length = 285
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 5/192 (2%)
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F Y T+ L + + T + S+ + + L + KS
Sbjct: 98 FKPLMDYFKNTKDALNISAKEINE-ATGTQMCSHWFSSSQWKLPTEKQYQQLQTLFASKS 156
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+P K Y + + ++
Sbjct: 157 GQLPKSHSDLTTEYQALHNEYGKLIKE--YDELKAEYENLRRPFHVTAEVPYTDVWTFAP 214
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
++ G+ HP +KP LL I+ SS++ G ++LD F GSG++G L R F+GIEM+
Sbjct: 215 VQYYPGK--HPCEKPANLLEHIIASSSREGAVVLDAFMGSGSTGKACLALNRKFVGIEME 272
Query: 255 QDYIDIATKRIA 266
++
Sbjct: 273 EEMYTKTINTFK 284
>gi|308182976|ref|YP_003927103.1| Adenine-specific DNA methylase [Helicobacter pylori PeCan4]
gi|308065161|gb|ADO07053.1| Adenine-specific DNA methylase [Helicobacter pylori PeCan4]
Length = 474
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 23/129 (17%)
Query: 5 NSLAINENQNSIFEWKD------KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG 55
++L + + I + +IK + L L +++D I+ DPPYN Q N
Sbjct: 354 DTLYFKDLEEEIKNLFNEDEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNE 413
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+Y + ++ + L +L G ++V + +
Sbjct: 414 FVYADNFKR--------------SSWLSMMENRLELAHALLNDKGVMFVSIDDNEQAYLK 459
Query: 116 TMLQNLNFW 124
++ +
Sbjct: 460 ALMDEVFNG 468
>gi|19705364|ref|NP_602859.1| BslIM [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|19713347|gb|AAL94158.1| BslIM [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 676
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 70/254 (27%), Gaps = 19/254 (7%)
Query: 23 IIKGNSISVL-EKLPAKS---VDLIFADPPYNLQLNG----QLYRPDHSLVDAVTDSWDK 74
II NS L K+ + + PPY L ++ +D
Sbjct: 431 IINANSTDALYNKILKQKNIKIGAAITSPPYFNAREYSQWSNLICYFIDMMINAKSVFDN 490
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ Y + +K N + + ++L +
Sbjct: 491 MENNGTYIYNIGDIVDQDNIYVKSN-----MSKRRQMLGFYSILIFNIVGYQCESNIIWD 545
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+ N + + E + + + P+ + +
Sbjct: 546 KGEVQSKRNSTPN---HFPGYLKPINVYEHALVFKKTNKEIEYKKTQVVKIDPVIKINSK 602
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+N G H P L I+ LDP+ GSG++ K IG E+
Sbjct: 603 GKNILG---HTAPFPIELAELIIPYIYNKDYYTLDPYLGSGSTLIAMIKNELKGIGFEIN 659
Query: 255 QDYIDIATKRIASV 268
+DY +A RI
Sbjct: 660 KDYFSLAYSRINDF 673
>gi|163784951|ref|ZP_02179703.1| putative DNA modification methylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159879778|gb|EDP73530.1| putative DNA modification methylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 280
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
EKLHP ++R++ TK GD +LDPF G G++ R GIE+ + +
Sbjct: 46 KYEKLHPAPFSYLDVARLIKFFTKKGDRVLDPFLGVGSTIKACLDTDREGYGIELSEKWC 105
Query: 259 DIATKRIASVQPLGNIE-----LTVLTGKRTEPRVAFNLLV 294
+I KR+ E K+ P F+ ++
Sbjct: 106 EITKKRLKEESNFIIDEQHLICGDSREIKKYFPNNYFDFII 146
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ + E N I + + +I G+S + + P D I PPY L +
Sbjct: 106 EITKKRLKEESNFIIDEQH-LICGDSREIKKYFPNNYFDFIITSPPYWNILKKIDRKTKE 164
Query: 63 SLVDAV-------TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ + + + + C VLK + +I S N
Sbjct: 165 RVENGLDVVYSKSDKDLGNIEDYHTFLKELTKIFFKCYDVLKNEKYMCIIVSDFNH 220
>gi|194098835|ref|YP_002001898.1| Twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
NCCP11945]
gi|193934125|gb|ACF29949.1| Twin-argninine leader-binding protein DmsD [Neisseria gonorrhoeae
NCCP11945]
Length = 457
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 236 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNENDIVLDYHLGSGT 287
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 288 TAAVAHKMNRQYIGIEQMDYIETLAVERMKK 318
>gi|307310194|ref|ZP_07589843.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
BL225C]
gi|306899746|gb|EFN30371.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti
BL225C]
Length = 370
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 29/191 (15%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
D++ PPY L+ + V + + A+ + + ++ G
Sbjct: 45 DMVVTSPPYWLKRDY-----------GVAGQIGQEPTANAFVQSLLDCMENWKSIIPKWG 93
Query: 101 TLWVIGSY--------HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
++++ + R+ Q+ + I N I+W K MP+ R ++ HE +
Sbjct: 94 SVFINIGDTYHRGSLANTPGRLEIAAQDAGWTIRNRIIWVKDAGMPDPAKDRLKSRHEYI 153
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
I +P + Y A K N + R + H P L
Sbjct: 154 IHFTPQRRDYYYDQFGYAEKYGNG------TGPSDVWQIGLRRDTSN----HLAPYPVEL 203
Query: 213 LSRILVSSTKP 223
+ R+L +
Sbjct: 204 VDRLLSLACPE 214
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ ++ I+LDPF G+GT+ A + RS IGI++
Sbjct: 314 WTDCGCNAPFRPGIVLDPFMGTGTTLRAAGDIGRSAIGIDL 354
>gi|217032421|ref|ZP_03437915.1| hypothetical protein HPB128_164g21 [Helicobacter pylori B128]
gi|216945900|gb|EEC24518.1| hypothetical protein HPB128_164g21 [Helicobacter pylori B128]
Length = 242
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 17/125 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
K+ ++Q + E +IK + L L +++D I+ DPPYN Q N +Y
Sbjct: 130 FKDLEEEIKSQFNEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYA 189
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ ++ + L +L G ++V + ++
Sbjct: 190 DNFKR--------------SSWLSMMENRLELAHALLSDKGVVFVSIDDNEQAYCKALMD 235
Query: 120 NLNFW 124
+
Sbjct: 236 EVFNG 240
>gi|291320089|ref|YP_003515347.1| type III restriction modification system:Methylase [Mycoplasma
agalactiae]
gi|290752418|emb|CBH40389.1| Type III restriction modification system:Methylase [Mycoplasma
agalactiae]
Length = 552
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKL---------PAKSV--DLIFADPPY 49
+ + SL+ N + N + +I G + L+ L +++V D+I+ DPPY
Sbjct: 76 LKKNESLSFNNDNNKPA---NTLIIGENYDALKNLIVIERERESQSETVNYDVIYIDPPY 132
Query: 50 NL--QLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
N L + V + + S + L ++LK +G ++V
Sbjct: 133 NTESSLTDGNNLSEKDEVSSSKFIYRDKFSRTGWLNMLNERLRLSHQLLKEDGVIFVSID 192
Query: 108 YHNIFRIGTML 118
+ ++
Sbjct: 193 DSEHAYLKVLM 203
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 18/229 (7%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
W + + NG ++ G ++ + D WR S N+ +
Sbjct: 288 WSESLDFPISHNGKIYYPGGSEKKWQSR----HSGNHATKDWQWRWSKEKINWGMKNNFL 343
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS-DWLIPICSGSERLRNKDGEKLHPT 206
+ S Y F + + N D + + + + G+ ++ K+
Sbjct: 344 VFKNNKVYSKQ-----YQFVDNNNQLVNRDSKFSNLIYSVHGSVGTSEQKDIFTNKIFDH 398
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYI-- 258
KP LL ++ ILD + GSGT+G + RS+ + ++ I
Sbjct: 399 PKPVGLLKFLINLHPNKNARILDFYAGSGTTGHAVMELNKEDGGNRSYTLVTNNENNIAT 458
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
++ +R+ + + + + L + L +
Sbjct: 459 NVCYERLYRINNGISTSNESNFDWIKKNNPYKSNLNVYNIEYYSTKLFD 507
>gi|328947546|ref|YP_004364883.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
gi|328447870|gb|AEB13586.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
Length = 520
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 14/172 (8%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+K+I G++ L+ L +D+I+ DPPY G+ + + ++ +
Sbjct: 90 NKLIIGDNYQALQNLLIQYRGKIDVIYIDPPYGKDSMGEFAKTN----------YNNAIT 139
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNP 136
+ + L+ R++L G ++ N + + I +
Sbjct: 140 RDNLLSMLYPRLVLARQLLSDEGVIFCSIDDKNQAYVKCLFDEIFGETNFAGIFPWRKRT 199
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ +E ++ + S K + D R +
Sbjct: 200 AKSDVPFGISQDYEYILVFAKSEFFKASIEGGNRKYFETPDFPNRPWRFHDM 251
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D++ G++ + N GEK K L++ ++ S+ IILD F GSGT+G
Sbjct: 342 DYVGMSQDGTKEISNILGEKSFGYPKSVKLINFLIKISSNQNSIILDFFAGSGTTGHAVL 401
Query: 243 K------LRRSFIGIEMKQD--------YIDIATKRIASVQ 269
R FI ++ + D+ +KR+ +
Sbjct: 402 DLNKSDGGNRIFILCQLNEKTDANPDGIAYDVTSKRLKRIM 442
>gi|329295798|ref|ZP_08253134.1| DNA methylase, N6_N4_Mtase domain protein [Plautia stali symbiont]
Length = 348
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEAYDAFTRAWLL 90
++ L S+DLI DPPY + +WD ++ + Y A+ +L+
Sbjct: 4 IKTLSDNSIDLIVTDPPY---------------YRVKSCAWDRQWKTTGQYLAWLNDYLV 48
Query: 91 ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
+R+LKPNG+L++ S + ++ + +LN I+W K + + +
Sbjct: 49 EFQRILKPNGSLYLFCSA-ALAADTEIMLRNHMRVLNHIIWAKPFGPWRRQKKDTLRS 105
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP ALL I+ +S++ G + D F GSG++ A +L R IG+E++ D K
Sbjct: 273 HPCEKPAALLEHIINASSRSGHTVADFFMGSGSAVKAAIQLGRQAIGVELETDRFIQTQK 332
Query: 264 RIASVQPLGNIE 275
I ++ P N E
Sbjct: 333 EIENLIPQINNE 344
>gi|302668809|ref|YP_003832634.1| DNA modification methylase [Butyrivibrio proteoclasticus B316]
gi|302397149|gb|ADL36052.1| DNA modification methylase [Butyrivibrio proteoclasticus B316]
Length = 309
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/258 (16%), Positives = 85/258 (32%), Gaps = 27/258 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + +I+G+ L + + D I D P + +
Sbjct: 56 MDEECLVIEGDGRD-LSIINNGAADCIITDHP----------------WEDTKATSGGNK 98
Query: 77 SFEAY--DAFTRAWLLACRRVLKPNGTLWVIG------SYHNIFRIGTMLQNLNFWILND 128
+F Y +T+ RVLK L I +Y ++ + M + F
Sbjct: 99 NFANYSCFKYTQKDFDEKARVLKDGSFLVEIIPAESATNYEYLYELKQMAKRAGFEYYAC 158
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ W+K + N + + + + ++ ++P
Sbjct: 159 VPWKKGTFVSNTGRKAKNTEDIMIFSKGKARALRPDKQRGLDPNGNPTRFMSGANGMLPT 218
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ + KD ++ ++KP L ++L TK +++LD F GSG G +R
Sbjct: 219 MFDVQAVPRKD--QIAQSEKPVPLFEQLLDYLTKENELVLDQFAGSGALGEACLNKKRKS 276
Query: 249 IGIEMKQDYIDIATKRIA 266
I IE+ R+
Sbjct: 277 ILIELDSMKAANIANRLN 294
>gi|298246346|ref|ZP_06970152.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
44963]
gi|297553827|gb|EFH87692.1| DNA methylase N-4/N-6 domain protein [Ktedonobacter racemifer DSM
44963]
Length = 277
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNL--------QLNGQLYRPDHSLVDAVTD---SW 72
+ G+ ++++ ++ + S D I DPPYN+ + + + D +D
Sbjct: 120 LHGDCLTLMREMESASFDFIATDPPYNVHMTQTMSGKRKANQHASRRTTYDMRSDDPADL 179
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
S+E Y C R+LKP + +I
Sbjct: 180 ANLPSYETYLEAMEHIFQECARLLKPRKYMVII 212
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR--RSFIGIEMKQDYI 258
K H KP L+ +++ TKPG +LDPF G G + A R +GIE+ ++
Sbjct: 41 RKAHGANKPPQLMRQLIEFFTKPGARVLDPFAGVGGTLIGASICAKPREALGIEINPRWV 100
Query: 259 DI 260
+I
Sbjct: 101 EI 102
>gi|126179426|ref|YP_001047391.1| DNA methylase N-4/N-6 domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862220|gb|ABN57409.1| DNA methylase N-4/N-6 domain protein [Methanoculleus marisnigri
JR1]
Length = 1055
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 18/141 (12%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+IK + L L + V I+ DPPYN + +YR ++
Sbjct: 495 LMIKSENWQALNLLQERYREQVKCIYIDPPYNTGNDEFVYRDNYQ--------------H 540
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPM 137
++ + L ++ +G L+ H I + +++ + +N
Sbjct: 541 SSWLSMMGDRLNLAHTIISNHGALFSSIDDHEIVNLRSLMNSTFGSLNFISTISVVNNLK 600
Query: 138 PNFRGRRFQNAHETLIWASPS 158
AHE L+ +
Sbjct: 601 GRSDRANIATAHENLLMYIRN 621
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D G+ + GE K L+ IL S+ DIILD F GSGT+G
Sbjct: 753 DTKYSSDYGTHAYKKLLGEVQFDNPKSPELIKDILHISSGEEDIILDFFAGSGTTGQSVL 812
Query: 243 KLR------RSFIGIEMKQDYIDIATKRIASVQPLGN 273
++ R ++ IE+ I RI V N
Sbjct: 813 EINKTQTSTRKYVLIELGDYLDFIIKPRIQKVMYSSN 849
>gi|22001102|gb|AAM88306.1|AF479828_5 unknown [Escherichia coli]
Length = 188
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++ G+ HP +KP +L +I+ +S++PGD++ D F GSG++ A L
Sbjct: 109 YTDVWTHKPVQYYPGK--HPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAAMALG 166
Query: 246 RSFIGIEMKQDYIDIATKRIA 266
R G+E++ + + +
Sbjct: 167 RLATGVELETERFEQTVREFR 187
>gi|240016412|ref|ZP_04722952.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae FA6140]
gi|240113100|ref|ZP_04727590.1| putative type III restriction/modification system modification
methylase [Neisseria gonorrhoeae MS11]
Length = 486
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 265 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNENDIVLDYHLGSGT 316
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 317 TAAVAHKMNRQYIGIEQMDYIETLAVERMKK 347
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+I+ DPPYN + + A D + S + F + L + +LK +G
Sbjct: 1 MIYIDPPYNTETDSF----------AYNDKF----SHSTWLTFMKNRLEIAKELLKDDGL 46
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
++V + +L + + + M G + +
Sbjct: 47 IFVQCDDKEQAYLKVLLDETF--TRENFINCIAVKMSEPSGNKMAH 90
>gi|328947572|ref|YP_004364909.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
gi|328447896|gb|AEB13612.1| DNA methylase N-4/N-6 domain protein [Treponema succinifaciens DSM
2489]
Length = 377
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
D K+HPT KP L+ I+ TK +I+ D F G G S A R IGI++ Q+Y
Sbjct: 137 HDIRKIHPTPKPPQLMKEIIEFFTKENEIVFDYFMGVGGSLLGAGLANRKAIGIDLNQNY 196
Query: 258 IDI 260
ID
Sbjct: 197 IDA 199
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 24 IKGNSISVLEK-------LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV-----TDS 71
I G+ I +L L +++ L+ DPPY ++ + D ++ V D
Sbjct: 215 ICGDCIEILSNENQMKGLLSDENISLVLIDPPYANMMSKEKTGADINVYGNVATPFTNDE 274
Query: 72 WDKFS-SFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
D + S E + + + LK +G + V
Sbjct: 275 RDFGNLSIENFYNLLKMSVELTLPYLKKHGYIVVF 309
>gi|317011743|gb|ADU85490.1| type III restriction-modification system: methylase [Helicobacter
pylori SouthAfrica7]
Length = 471
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 17/125 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
K+ +NQ + E +IK + L L +++D I+ DPPYN Q N +
Sbjct: 358 FKDLEEEIKNQFNENEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQ-NNEFIY 416
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
D ++ L + +L G +V + ++
Sbjct: 417 ADRFKRS-------------SWLTMMTNRLELAQYLLNDKGVAFVSIDDNEQAYCKVLMD 463
Query: 120 NLNFW 124
+
Sbjct: 464 EIFNG 468
>gi|38348090|ref|NP_941339.1| modification methylase [Serratia marcescens]
gi|38259567|emb|CAE51796.1| modification methylase [Serratia marcescens]
Length = 416
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/268 (15%), Positives = 74/268 (27%), Gaps = 42/268 (15%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-----------------------SWDK 74
+ + L PPY L+ + D + D
Sbjct: 126 EQIHLCLTSPPYLLRNSRDYGHGGGRGEQVYIDWLLRILEPIVKQLVPGASVALNITQDS 185
Query: 75 FS----SFEAYDAFTRAWL-----LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
F+ S Y L L L+ H + L + +
Sbjct: 186 FNRGRPSRSLYLERLTLALCDKLGLELMDRLQWVNRSKPPSPTHWACKQRVQLCSSYEPV 245
Query: 126 LNDIVWRKSNPMPNFRG-RRFQNAHETLIWA-----SPSPKAKGYTFNYDALKAANEDVQ 179
L N R + H L A + Y + E
Sbjct: 246 LWFTNDASKVRSNNLRVLQPHSEQHLKLQAAGGENRTTFYGDGAYQLKSGSFGNKTEGTI 305
Query: 180 MRSDWLIPICSGSER----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
++ R + + G LH P L + ++ T+PGD+++DPF G
Sbjct: 306 PKNTLFYGNSCADTRFCHSIARELGFPLHGATSPTRLAAFLIEFLTEPGDVVVDPFAGLH 365
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATK 263
A++L R ++ + +++ I+
Sbjct: 366 KVPIAAERLGRRWLATDKIMEWLAISRN 393
>gi|190410439|ref|YP_001965942.1| putative modification methylase [Klebsiella pneumoniae]
gi|226807827|ref|YP_002791541.1| putative restriction methylase [Enterobacter cloacae]
gi|226810158|ref|YP_002791854.1| putative restriction methylase [Enterobacter cloacae]
gi|146151233|gb|ABQ02999.1| putative modification methylase [Klebsiella pneumoniae]
gi|226426054|gb|ACO54147.1| putative restriction methylase [Enterobacter cloacae]
gi|226426385|gb|ACO54477.1| putative restriction methylase [Enterobacter cloacae]
Length = 416
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/268 (15%), Positives = 74/268 (27%), Gaps = 42/268 (15%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD-----------------------SWDK 74
+ + L PPY L+ + D + D
Sbjct: 126 EQIHLCLTSPPYLLRNSRDYGHGGGRGEQVYIDWLLRILEPIVKQLVPGASVALNITQDS 185
Query: 75 FS----SFEAYDAFTRAWL-----LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
F+ S Y L L L+ H + L + +
Sbjct: 186 FNRGRPSRSLYLERLTLALCDKLGLELMDRLQWVNRSKPPSPTHWACKQRVQLCSSYEPV 245
Query: 126 LNDIVWRKSNPMPNFRG-RRFQNAHETLIWA-----SPSPKAKGYTFNYDALKAANEDVQ 179
L N R + H L A + Y + E
Sbjct: 246 LWFTNDASKVRSNNLRVLQPHSEQHLKLQAAGGENRTTFYGDGAYQLKSGSFGNKTEGTI 305
Query: 180 MRSDWLIPICSGSER----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
++ R + + G LH P L + ++ T+PGD+++DPF G
Sbjct: 306 PKNTLFYGNSCADTRFCHSIARELGFPLHGATSPTRLAAFLIEFLTEPGDLVVDPFAGLH 365
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATK 263
A++L R ++ + +++ I+
Sbjct: 366 KVPIAAERLGRRWLATDKIMEWLAISRN 393
>gi|110003969|emb|CAK98309.1| hypothetical protein n-6 adenine-specific dna methylases signature
ps00092 [Spiroplasma citri]
Length = 195
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 22/200 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+I G++++ ++ L VDLI DPP YNL +++ ++ +
Sbjct: 8 KLINGDALTFIKSLENDIVDLILTDPPYLYNLPKRKNEQINKNNISKSINKYINAIYDNN 67
Query: 80 AYDAFTRA-WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+++F +L R+ K L + + + + +N + P
Sbjct: 68 LHNSFDINTYLDEFYRISKTKFMLIWMNRWQIKDYLDWVYKNNMNFDFYFWEKTNPMPTN 127
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
NF Q+ +I S + Y NY+ K ++ + +
Sbjct: 128 NF---ILQDKEYCMIIYSKKHQIPNYQNNYENKKTIFKNSTGSAYKI------------- 171
Query: 199 DGEKLHPTQKPEALLSRILV 218
HPT+KP + ++
Sbjct: 172 ---TEHPTEKPLNIFYDLIQ 188
>gi|311109937|ref|YP_003982788.1| N-4 cytosine-specific DNA methylase [Achromobacter xylosoxidans A8]
gi|310764626|gb|ADP20073.1| N-4 cytosine-specific DNA methylase [Achromobacter xylosoxidans A8]
Length = 442
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 90/304 (29%), Gaps = 75/304 (24%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I G+S +L + + L+ PPY L RP ++ + +AY
Sbjct: 129 IWGDSTRNFPQL-GEPISLVVTSPPY------LLRRPR---------AYGNPLTEQAYVD 172
Query: 84 FTRAWLLACRRVLKPNGTL--------WVIGS---------------------------Y 108
F + L + P G++ +V GS +
Sbjct: 173 FICSALEPIVAQMAPGGSICLNLTNDSFVPGSPARSVAKERLVLALVDRLGLELMDTLIW 232
Query: 109 HN-IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK----- 162
HN G + + + + R + + L S K
Sbjct: 233 HNPSKPPGPIQYASKRRVQLNTSYEPVYWFTTDSSRVYSDNRRVLQPHSDRHKQWLRQVQ 292
Query: 163 --------------GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD----GEKLH 204
Y + E ++ I R +D G +H
Sbjct: 293 EAGACPRTGVYGDGAYRLRPSSYMNETEGRIPKNVLPIGHACADTRQYRRDAAGLGLPIH 352
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
P AL ++ + PG ++LD F G+ + A+ L R ++ E+ +Y+ +R
Sbjct: 353 GAMMPLALARFLIEFLSLPGQLVLDLFGGTAKTAMAAEVLDRRWMIFELFAEYLRGGAQR 412
Query: 265 IASV 268
+
Sbjct: 413 FQRM 416
>gi|239584281|gb|ACR82895.1| AmgB [Streptomyces sp. KCTC 9047]
Length = 290
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/264 (17%), Positives = 97/264 (36%), Gaps = 37/264 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + ++ + L LPA+ V L+ P P DS D S +
Sbjct: 19 RLTRADATAFLASLPARDVRLVVTSP--------WFTGP------FTADSADPVSP--RF 62
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSY-----------HNIFRIGTMLQNLNFWILNDIV 130
+ +L RVL P+G++ + N+ I +L + + +L +
Sbjct: 63 TEWITGFLREIERVLLPDGSVVLEMGCTWAEDAPVRTAQNLAAIAALLASGTWKLLQEFY 122
Query: 131 WRKSNP------MPNFRGRRFQNAHETLIWASPSPKAKGYTFN---YDALKAANEDVQMR 181
W + RG R ++ T W + +P + + +
Sbjct: 123 WYNPDFLLAKDEWVEERGIRLRDCVTTWFWLARTPDVPVDNRRVRGFQSHLTHPFGNFLA 182
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ +R R + G + + P A + + T+PG+ ++DPF G G++ A
Sbjct: 183 FGDADVDQAYLDRCRAE-GTRPSEDRFPVAAPAYFIRLLTEPGEHVVDPFVGIGSTALAA 241
Query: 242 KKLRRSFIGIEMKQDYIDIATKRI 265
+ R + + + +++A +R+
Sbjct: 242 ELSGRRWSCNDFSAEAVEVARRRL 265
>gi|307638041|gb|ADN80491.1| type II DNA Modification enzyme [Helicobacter pylori 908]
Length = 343
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 17/113 (15%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
S E +IK + L L +++D I+ DPPYN Q N +Y +
Sbjct: 243 SENEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYADNFKR------- 295
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
++ A L +L G ++V + ++ +
Sbjct: 296 -------SSWLAMMENRLELAHALLNDKGVMFVSIDDNEQAYCKALMDEVFNG 341
>gi|167841402|ref|ZP_02468086.1| gp56 [Burkholderia thailandensis MSMB43]
Length = 264
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 13/95 (13%)
Query: 16 IFEWKDKIIKGNSISVLE-KLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ +W D G+ ++ + V I PPY + V
Sbjct: 1 MRDWIDHCHFGDCRELMRVMIADGVKVQTIVTSPPYWGLRDY-----------GVDGQIG 49
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ S+ + R++L +GT WV
Sbjct: 50 RESTLREFIDTLVEVFDLARQLLADDGTAWVNMGD 84
>gi|255282318|ref|ZP_05346873.1| prophage LambdaSa04, DNA methylase [Bryantella formatexigens DSM
14469]
gi|255267266|gb|EET60471.1| prophage LambdaSa04, DNA methylase [Bryantella formatexigens DSM
14469]
Length = 357
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/207 (10%), Positives = 65/207 (31%), Gaps = 16/207 (7%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSI--SVLEKLPAKS-VDLIFADPPYNLQLNGQLY 58
+ +++ ++ + +++ G+S+ L +L+ DPPYN+ +
Sbjct: 155 EELKKPTMSKTEDLWLLGRHRLVCGDSLLPETFSTLMDGKRANLVVTDPPYNVNVEETAG 214
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + D + Y F A + + ++ + +++V +
Sbjct: 215 KIKN----------DNMPDEDFY-KFLFAAFVNMEQNMENDASIYVFHADSKGLIFRQAF 263
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDV 178
+ F++ +W+K+ + ++ HE ++ + + D
Sbjct: 264 HDAGFYLSGCCIWKKNALVLGRSPYQW--QHEPCLFGWKVGGKHQWYSDRKQTTIWEYDR 321
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHP 205
S ++ H
Sbjct: 322 PNSSRDTSNTSDNFLAVKRSGYRAPHS 348
>gi|169830638|ref|YP_001716620.1| putative RNA methylase [Candidatus Desulforudis audaxviator MP104C]
gi|169637482|gb|ACA58988.1| putative RNA methylase [Candidatus Desulforudis audaxviator MP104C]
Length = 258
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 195 LRNKDGEKL-HPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIE 252
L++++ HP P L R++ + G ++LDPF GSG++ A + + +G E
Sbjct: 18 LKDREERGYNHPAMFPSRLTDRLVEIFGRKGGGLVLDPFMGSGSTLYSAYRHGLASVGFE 77
Query: 253 MKQDYIDIATKRIA 266
+ YIDIA +R+A
Sbjct: 78 LSAGYIDIARQRLA 91
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 4/129 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II+ +S +L + SV L PPY + Q D + D + Y
Sbjct: 104 RIIQDDSRRLLNYVAPASVGLCVTSPPYW-DILNQRRTADGKTIRNYGSDPDDLGRIKDY 162
Query: 82 DAFTRA---WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
F A R + V+ L L D + +
Sbjct: 163 GEFLDALQVVFAGVRETMVTGAYCVVVVMDIRKKDDFFPLHMDLTARLRDTGLTLDDIII 222
Query: 139 NFRGRRFQN 147
R + N
Sbjct: 223 WDRRAEYNN 231
>gi|115289048|gb|ABI85535.1| M.Hin1056ModP-5 [Haemophilus influenzae]
Length = 322
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPY +P S
Sbjct: 210 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYY----FVKKKPQDSFGYNTNFK----- 260
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ F + LL + +L +G + + + +L
Sbjct: 261 -LSTWLTFMKNRLLIAKELLTDDGIIVISIDDDGNAYLKILL 301
>gi|34762306|ref|ZP_00143310.1| TYPE III RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|27888028|gb|EAA25091.1| TYPE III RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
Length = 525
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 15/136 (11%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---------------FEAYDAFTR 86
+I+ DPPYN + ++ + + + +
Sbjct: 1 MIYIDPPYNTGKDFVYKDNFKDNIENYKEITGQINKEGIKLTTNTETNGRYHSDWLNMMY 60
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
L R +L +G +++ + I + + + V N
Sbjct: 61 PRLKLARNLLTDDGVIFISIDNNEIHNLRKICDEIFGEENFIEVITVINNPRGRDYGGIA 120
Query: 147 NAHETLIWASPSPKAK 162
N HE L+ S +
Sbjct: 121 NMHEYLLVYKKSENSF 136
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 7/122 (5%)
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
G+ + + + + GY KA + + G+ ++
Sbjct: 218 WRWGKEKAKENLNVNIVAKKMQDGGYMIVEKYRKAEVMARSVWNTKDDNSEKGTLLIKEI 277
Query: 199 -DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGI 251
G K+ K ++ + + + DIILD F GS T+ + R +I +
Sbjct: 278 FKGNKVFEFPKSLNMIKKTIEIGSNNSDIILDFFSGSATTAHSVMQLNAEDEGNRKYIMV 337
Query: 252 EM 253
++
Sbjct: 338 QL 339
>gi|71559071|ref|YP_271798.1| putative adenine-specific DNA methylase [Salmonella enterica]
gi|68166370|gb|AAY88131.1| putative adenine-specific DNA methylase [Salmonella enterica]
Length = 157
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 18/162 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++I GN + ++ P ++VD I DPPY + R S+ TD W
Sbjct: 3 RLILGNCVDIMSGFPERAVDFILTDPPYLVGFRD---RSGRSIAGDRTDEW--------- 50
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ RVLK + L ++ + R ++ F ++ +V+ K+ +
Sbjct: 51 ---LQPACNQMYRVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYS---SK 104
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
HE + A D L + D
Sbjct: 105 SAYVGYRHECAYVLAKGRPALPQNPLPDVLGWKYSGNRHHPD 146
>gi|329124207|ref|ZP_08252754.1| type III restriction/modification enzyme [Haemophilus aegyptius
ATCC 11116]
gi|327467632|gb|EGF13130.1| type III restriction/modification enzyme [Haemophilus aegyptius
ATCC 11116]
Length = 486
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D+ + G+ L+N +KPE+L+ I+ +T DI+LD GSGT
Sbjct: 265 DLWTNINTTGLEAEGNVELKN--------GKKPESLIETIIKLATNESDIVLDYHLGSGT 316
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ AVA K+ R +IGIE +A +R+
Sbjct: 317 TAAVAHKMNRQYIGIEQMDYIETLAVERLKK 347
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 16/106 (15%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+I+ DPPYN + Y DKF S + F + L + +L +G
Sbjct: 1 MIYIDPPYNTGEDSFKYN-------------DKF-SHSTWLTFMKNRLEIAKTLLADDGV 46
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
++V + +L + + + M G + +
Sbjct: 47 IFVQCDDKEQAYLKVLLDETF--TRENFINCIAVKMSEPSGNKMAH 90
>gi|118576380|ref|YP_876123.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|3599390|gb|AAC62696.1| site-specific DNA methyltransferase [Cenarchaeum symbiosum]
gi|118194901|gb|ABK77819.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 358
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 16/141 (11%)
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
+ P + ++A + + A ++ +
Sbjct: 216 HGYDPEKHCPTCYRKFKRHATR------KRIGGHEHYPIFAACNPRGKNPGNVWEISTKA 269
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
G+E H PE L+SRI+ +T+ GD +LDPF G GT+G V+ L+R F
Sbjct: 270 HHGNE----------HFAVFPEDLVSRIVKFATREGDYVLDPFAGRGTTGIVSACLKRGF 319
Query: 249 IGIEMKQDYIDIATKRIASVQ 269
GI++ +D + +
Sbjct: 320 TGIDLYPANVDRTRRNVKDSA 340
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 17 FEWKDKIIKGNSISVLEKLPA-----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
+ ++I+G++ +VL +L L PPY + Y D S
Sbjct: 1 MNNRFQVIRGDARAVLPRLAKKNGERGRYRLAVTSPPY---YGHRKYGSDPS-------E 50
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNLNF 123
+ + + + +C +L +G+L+ VIG R+ L +L +
Sbjct: 51 LGQEGTPDEFVEELAGVFKSCMDLLTDDGSLFIVIGDTRRRRRKLMVPHRLALRLVDLGY 110
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
DIVW K N + + A+E ++ S
Sbjct: 111 HFQEDIVWYKKNALSQSSKQNLTQAYEFVLVLSK 144
>gi|320101128|ref|YP_004176720.1| DNA methylase N-4/N-6 domain-containing protein [Desulfurococcus
mucosus DSM 2162]
gi|319753480|gb|ADV65238.1| DNA methylase N-4/N-6 domain protein [Desulfurococcus mucosus DSM
2162]
Length = 319
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D I S +R + P + +++ T+PG+I+LDP GSGT+ A
Sbjct: 45 DVSTTIWSFPKRGSWATHRGDYRGNWPPQMARALILGYTEPGEIVLDPMAGSGTTCIEAV 104
Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
L R I +++ + + + R+
Sbjct: 105 LLGRKCIAVDINYNAVMLTHHRL 127
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 21/129 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN--LQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ G++ L+++ +VDL+ PPY + G V + E
Sbjct: 156 RVFHGDARR-LDEIRDNTVDLVATHPPYFNIIGYGGN-----------VDGDLSNARTLE 203
Query: 80 AYDAFTRAWLLACRRVLKPN-------GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
Y + R RVLKP G V G Y I + +IL + V +
Sbjct: 204 EYLEWLREVAGEIYRVLKPGRYCGILIGDTRVHGHYVPITHYALEVFLDAGFILKEEVIK 263
Query: 133 KSNPMPNFR 141
+ M R
Sbjct: 264 IQHKMKTTR 272
>gi|126465494|ref|YP_001040603.1| DNA methylase N-4/N-6 domain-containing protein [Staphylothermus
marinus F1]
gi|126014317|gb|ABN69695.1| DNA methylase N-4/N-6 domain protein [Staphylothermus marinus F1]
Length = 342
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
D + S +R + P + ++ T PGD +LDP GSGT+ AK
Sbjct: 62 DISTTVWSFPKRGSWATHRGNYRGNWPPQMARALIQKYTMPGDTVLDPMIGSGTTCIEAK 121
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
L R+ IG+++ + + + R+ ++
Sbjct: 122 LLGRNCIGVDINYNALMLTLHRLYWLEKYLEK 153
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 2 SQKNSLAINENQN-SIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
S+ + EN SI + + +I G++ + L+K+ S+DL+ PPY +
Sbjct: 156 SKPQEIIEGENSPISIEDILNAKVEIYHGDARN-LDKISNNSIDLVATHPPYFNIIRY-- 212
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
S + + E Y + + + RVLKP + ++ I +
Sbjct: 213 -----SRGEKIPGDLSGARKLEEYLSMIQQVISEAYRVLKPGHYMGILVGDTRIHKHYVP 267
Query: 118 LQNL 121
+ +
Sbjct: 268 ITHY 271
>gi|195182280|emb|CAP72353.1| DNA methylase [Escherichia coli]
gi|195182288|emb|CAP74071.1| DNA methylase [Escherichia coli]
Length = 83
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R IG+E++ +
Sbjct: 14 HPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQT 71
>gi|217078044|ref|YP_002335762.1| modification methylase, type III R/M system [Thermosipho africanus
TCF52B]
gi|217037899|gb|ACJ76421.1| modification methylase, type III R/M system [Thermosipho africanus
TCF52B]
Length = 879
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ K + ++ D +D I S S+ + T+ E
Sbjct: 627 NVYGVKKVDKCLNCGQDDWKVEYLTSDEVKVTDNWKDIPSYSDYFK-------FSTENSE 679
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
LL RI+ S++ G++I+D F GSGT+ AVA KLRR +IGIE+ + + R+ V
Sbjct: 680 ILLKRIIESTSNDGNLIIDFFLGSGTTTAVAHKLRRKWIGIELGDHFWSVVLPRMKKVLA 739
Query: 271 LGNIELTVLTGKRT 284
++ R
Sbjct: 740 YDKSGISKEKDVRE 753
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 17/143 (11%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+IK + L + + V I+ DPP+NL + Q +
Sbjct: 393 LIKSENYQALNTILPKFKEKVQTIYIDPPFNLDSSDQFMYRTNYK-------------DA 439
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMP 138
+ + + L G+++V Y+ + + ++ + +
Sbjct: 440 NWATLLENRIKLAKEWLNEKGSIFVRCDYNGNWIVRPLMDEIFGKENFKNEIIINRKRQS 499
Query: 139 NFRGRRFQNAHETLIWASPSPKA 161
+F+ +E L + S S
Sbjct: 500 IGTPNKFEVENEYLYFYSKSENY 522
>gi|297243075|ref|ZP_06927013.1| Adenine specific DNA methylase Mod [Gardnerella vaginalis AMD]
gi|296889286|gb|EFH28020.1| Adenine specific DNA methylase Mod [Gardnerella vaginalis AMD]
Length = 699
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 56/317 (17%), Positives = 94/317 (29%), Gaps = 37/317 (11%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+ ++ + +LE L VD I+ DPPYN Y D DS D +
Sbjct: 127 HTLIEADNYHALQLLEYLYEGQVDCIYIDPPYNTGAKDWKYNND------YVDSSDAYR- 179
Query: 78 FEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNP 136
+ + L +++L P + L V +G +L+ L +V NP
Sbjct: 180 HSKWLSMMEKRLKLAKKLLNPADSVLIVTIDEKEYLHLGCLLEELFPDARMQMVSSVINP 239
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ R F E + + N + + R
Sbjct: 240 AGSSRQNEFSRTDEFIF-FIKVGTSSPQKLPLGPSWEGNISK--SGNKKKLGWNSLIRSG 296
Query: 197 NKDGEKLHPTQK-PEALLSRILVSSTKPGDIILDP-----------FFGSGTSGAVAK-- 242
P P L +R T D + +P + T+
Sbjct: 297 TSIYRIDRPNMFYPIYLDNR-----TNKIDSVGEPIPISIDRDSVDTKSNCTTIWPILSD 351
Query: 243 -KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
K R +G E Q+ +D R+ P G+ + ++ G
Sbjct: 352 GKEGRWRVGHEKLQELLDNHYVRVGI--PRGDKTSLSYVPEGARKKIENGEYTILGYRSD 409
Query: 302 GQILTNAQGNISATVCA 318
G I+T+ N A
Sbjct: 410 GSIITD-DENHVAKFLP 425
>gi|5578898|emb|CAB51247.1| ORF3; hypothetical protein [Neisseria meningitidis]
Length = 171
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 33/77 (42%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
K+ K HPTQKP L +L K GD ILD GSGT + E+ D
Sbjct: 83 RKNRNKTHPTQKPVELYQWLLKMYAKQGDKILDTHLGSGTLAIACCIAQFDLTACEINSD 142
Query: 257 YIDIATKRIASVQPLGN 273
Y + ++I + P
Sbjct: 143 YYQQSIEKIKNNLPEAR 159
>gi|284097893|ref|ZP_06385852.1| modification methylase [Candidatus Poribacteria sp. WGA-A3]
gi|283830595|gb|EFC34746.1| modification methylase [Candidatus Poribacteria sp. WGA-A3]
Length = 106
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + G+ + V+ +S+DLI DPP+N + L+ + F
Sbjct: 8 NTLYYGDCLDVMADFENRSIDLICLDPPFNSNEKYNKVFRNSGLL--IDPQIKAFDDVWL 65
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIG 106
+D + + + + + + G
Sbjct: 66 WDNTSAERVERVKNAVANPASKVIAG 91
>gi|167855189|ref|ZP_02477959.1| putative DNA modification methylase [Haemophilus parasuis 29755]
gi|167853642|gb|EDS24886.1| putative DNA modification methylase [Haemophilus parasuis 29755]
Length = 289
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 41/106 (38%)
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
YD N+ L SE+ HP + +++ TK +
Sbjct: 14 YDRRNTLNDLTGKEWLKLTASFWFSEKCAMDKDAMKHPAPYLIKDIEKLIKLFTKQKMTV 73
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
LDPF GSGT+ L R IG ++ DY ++A RI ++
Sbjct: 74 LDPFCGSGTTLLSCLNLGRKGIGFDLNNDYRELALSRIKKIKDFKE 119
Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 27/160 (16%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ------------LYRPDHSLVDAVTDSW 72
GNS+ +++K+ S+D I PPY+ L + V+ +D
Sbjct: 129 LGNSLDLIKKIEHNSIDYIVTSPPYHNILKNKSQGIRTDKAYKGFRDGGRIGVEYYSDHI 188
Query: 73 DKFSSFEAYDAFTRA---WLLACRRVLKPNGTLWVIGSYHN------------IFRIGTM 117
D + + Y++F ++ +VLK ++ S I + +
Sbjct: 189 DDLGNCDNYESFIAKLSMLMVDAYKVLKYKKYCSIVISDFTVDKKEVNVQGDIIRMMQKI 248
Query: 118 LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ + + P + + H+ +I
Sbjct: 249 GFEFSGTTILLQNNKPLYPFGYPYAYKINHHHQNIITFRK 288
>gi|257075872|ref|ZP_05570233.1| DNA methylase N-4/N-6 [Ferroplasma acidarmanus fer1]
Length = 286
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 11/127 (8%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
+ L N ++N++ E + I G++ + L ++ +S+DLI PPY + S
Sbjct: 128 DRLNFNNSENNLIEPE--IFNGDARN-LNEIEDESIDLIMTHPPYANIIKY-------SK 177
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNF 123
+ + D S E Y + + R LK +IG + +
Sbjct: 178 DNIIKDDLSSIESLEEYYKKFKKVIKEMHRTLKKGKYCAILIGDTRKKGYQIPISFTIMQ 237
Query: 124 WILNDIV 130
L +
Sbjct: 238 LFLKEGF 244
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
L I++ +K D+ILDPF GSGT+ AK L+R IG+++ I R+
Sbjct: 75 PQLPRNIILRYSKENDLILDPFSGSGTTLIEAKLLKRHGIGMDINLGSAMITMDRLN--- 131
Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
EP + I+
Sbjct: 132 ------FNNSENNLIEPEIFNGDARNLNEIE 156
>gi|134299056|ref|YP_001112552.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134051756|gb|ABO49727.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
MI-1]
Length = 330
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
H+T+ A P + + A + Q + R ++ ++ H
Sbjct: 204 SQKHKTISLAKTDPVYSHHVWRRYASPVWMDIRQTNTLQY--------RSAREEKDEKHI 255
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+++R + + PGD++ PF G G+ G A + R F+GIE+K+ Y IA +
Sbjct: 256 CPLQLDVIARGVELWSNPGDVVFSPFMGIGSEGYQAVLMGRRFVGIELKESYFKIAANNL 315
Query: 266 ASVQPLGNI 274
N
Sbjct: 316 KMAVDELNE 324
Score = 39.6 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ + V + LP S+ PP+ + + ++ D +F Y
Sbjct: 16 LYLGDCVEVTKGLPDNSIHYSIFSPPF--SSLYTYSNNERDMGNSRNDE--EFMEHFRYL 71
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY 108
+ RV P +
Sbjct: 72 ------ISELYRVTIPGRLVSFHCMD 91
>gi|296136461|ref|YP_003643703.1| Site-specific DNA-methyltransferase (adenine-specific) [Thiomonas
intermedia K12]
gi|295796583|gb|ADG31373.1| Site-specific DNA-methyltransferase (adenine-specific) [Thiomonas
intermedia K12]
Length = 1138
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 19/139 (13%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I + L L + + I+ DPPYN +G LY+ D F
Sbjct: 537 LIHSENWQALNLLQEKFRERIQCIYIDPPYNTGGDGFLYK-------------DSFR-HS 582
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFWILNDIVWRKSNPMP 138
++ A L + +L +G L+ + +L + + N
Sbjct: 583 SWAAMMADRLALAKPLLGTHGVLFASIDDKERLSLERLLADTFGAENRVEELIWAQNTTK 642
Query: 139 NFRGRRFQNAHETLIWASP 157
N N HE + +
Sbjct: 643 NQSPTYSTN-HEYVEVFAR 660
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/185 (21%), Positives = 60/185 (32%), Gaps = 5/185 (2%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR-KSNPMPNFRGRRFQ 146
W+ P G N + R P +
Sbjct: 764 WIWREDNPSAPAGKQSPTTKDPNDPNYRFYKPMHANGKRCEPPKRGWGWPEKPIAEEPNR 823
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANE-DVQMRSDWLIPICSGSERLRNKDGE-KLH 204
+ +L S K K +E D Q+ ++ G + L N G
Sbjct: 824 PSFSSLESDSRIVWGKDEKKKPQIKKFLHEVDTQVSKSVVLDYTDGEKELTNLTGSPNSF 883
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV--AKKLRRSFIGIEMKQDYIDIAT 262
P KP L+ R + +T+P D ++D F GSGT G A + R F+ EM + +
Sbjct: 884 PNPKPTTLIGRFIEQTTEPKDWVMDFFAGSGTCGHAVLALEQPRRFVLTEMGGYWDTVTK 943
Query: 263 KRIAS 267
RIA
Sbjct: 944 PRIAR 948
>gi|329920538|ref|ZP_08277270.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
1401G]
gi|328936214|gb|EGG32667.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
1401G]
Length = 736
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 60/349 (17%), Positives = 96/349 (27%), Gaps = 66/349 (18%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
+ EN W +I+ ++ + +LE L A VD I+ DPPYN Y D
Sbjct: 112 KPIDSIENATDSSLW-HTLIEADNYHALQLLEYLYAGKVDCIYIDPPYNTGAKDWKYNND 170
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQN 120
DS D + + + L +++L P + L V +G +L+
Sbjct: 171 ------YVDSSDAYR-HSKWLSMMEKRLKLAKKLLNPADSVLIVTIDEKEYLHLGCLLEE 223
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
L +V N RG F +E L + + D
Sbjct: 224 LFPDARMQMVSSVINSKGVSRGSEFFRVNEYLFFVKIGDCSVSELPLQDQWL----GNIK 279
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
S R + K P + S F G+G V
Sbjct: 280 TSTTKQVRWGSLMRSGSGSDRKDSPG------CFYPIYISKDKTH-----FCGAGEVVPV 328
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
+ R+ + I I P+ E + L +G +
Sbjct: 329 G--VDRNTVAIPKDVIAI----------FPIRENGTEGRWQYSREKYLN---LQAKGYAR 373
Query: 301 PGQILTNAQGNISATVC---------------------ADGTLISGTEL 328
+G AT+ DG+LI +
Sbjct: 374 ISTQ---TKGKKEATIRYISEGWQKRVESGEIKVTGTAVDGSLIFDDKE 419
>gi|325996645|gb|ADZ52050.1| Type III restriction-modification system methylation subunit
[Helicobacter pylori 2018]
gi|325998234|gb|ADZ50442.1| Type III restriction-modification system methylation subunit
[Helicobacter pylori 2017]
Length = 474
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 17/113 (15%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
S E +IK + L L +++D I+ DPPYN Q N +Y +
Sbjct: 374 SENEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFVYADNFKR------- 426
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
++ A L +L G ++V + ++ +
Sbjct: 427 -------SSWLAMMENRLELAHALLNDKGVMFVSIDDNEQAYCKALMDEVFNG 472
>gi|124267569|ref|YP_001021573.1| DNA modification methylase-like protein [Methylibium petroleiphilum
PM1]
gi|124260344|gb|ABM95338.1| DNA modification methylase-like protein [Methylibium petroleiphilum
PM1]
Length = 307
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP P + R+ + G+ +LDPF G+GT+ A L R I ++ DY +I
Sbjct: 38 HPAVFPLEIPHRLTKLFSFYGETVLDPFAGTGTTARAAIPLGRRAICVDQNADYTEII 95
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G+S ++ + + SV L+ PPY + + + + ++ +D +
Sbjct: 115 VVNGDSRK-MDFVESDSVGLVVTSPPYWNKADYGDSKRNLGTIERYSD----------FI 163
Query: 83 AFTRAWLLACRRVLKPNGTLWV 104
R C R+L P L V
Sbjct: 164 EGIRPVFEECYRILTPGRKLCV 185
>gi|3599413|gb|AAC62718.1| site-specific DNA methyltransferase [Cenarchaeum symbiosum]
Length = 368
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 16/143 (11%)
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+ P + ++A + + A ++ +
Sbjct: 220 WAHGYDPEKYCPTCYRKFRRHATR------KRIGGHEHYPIFAACNPRGKNPGNVWEIST 273
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
G+E H PE L+SRI+ +TK GD +LDPF G GT+G V+ L+R
Sbjct: 274 KAHHGNE----------HFAVFPEDLVSRIVKFATKEGDYVLDPFAGRGTTGIVSACLKR 323
Query: 247 SFIGIEMKQDYIDIATKRIASVQ 269
F GI++ + A + +
Sbjct: 324 GFTGIDLYPANVARARRNVQDSA 346
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 23/149 (15%)
Query: 22 KIIKGNSISVLEKLPAKSV-----DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+I++G++ VL +L + L PPY +R S +
Sbjct: 12 QILQGDAREVLPRLAKNTAERGRYRLAVTSPPYY------GHRKYGSEPS----ELGQEK 61
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLW-VIGSYHN-------IFRIGTMLQNLNFWILND 128
+ + + +C +L +G+L+ VIG R+ L +L + D
Sbjct: 62 TPDEFIEELAGVFKSCMDLLTDDGSLFIVIGDTRRRRHKLMVPHRLALRLVDLGYHFQED 121
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASP 157
I+W K N + + A+E ++ S
Sbjct: 122 IIWYKRNAISQSSRQNLTQAYEFVLVLSK 150
>gi|237756542|ref|ZP_04585068.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691301|gb|EEP60383.1| DNA methylase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 241
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/247 (17%), Positives = 74/247 (29%), Gaps = 53/247 (21%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + + + L +SVD I DPPY + +
Sbjct: 39 LYCNDIRNYKDILSPESVDWIITDPPY----------------------------PKKFL 70
Query: 83 AFTRAWLLACRRV-LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ L LKP+G L V+ + + L +I P
Sbjct: 71 -WVYDVLSELSDYVLKPHGALIVMVGQSYLPEVINKLSKHLKYIWTLAYLTPGGQSPYIW 129
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ + ++ + + + N D +
Sbjct: 130 KVKCNTFWKPVLIFAKDKYSGDSFGDVIKTSTNNNDKRF--------------------- 168
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
H + E I PG ILDPF G GT+ V+ K SFIGI++ ++ I
Sbjct: 169 --HKWGQSEEGFDIIFEKFVFPGQTILDPFVGGGTTAVVSLKRGCSFIGIDVDENCIKKT 226
Query: 262 TKRIASV 268
+R+ +
Sbjct: 227 EERVKNE 233
>gi|217032845|ref|ZP_03438324.1| hypothetical protein HPB128_165g4 [Helicobacter pylori B128]
gi|298737008|ref|YP_003729538.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
gi|216945428|gb|EEC24092.1| hypothetical protein HPB128_165g4 [Helicobacter pylori B128]
gi|298356202|emb|CBI67074.1| adenine specific DNA methylase (Mod-related) [Helicobacter pylori
B8]
Length = 228
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 9/155 (5%)
Query: 16 IFEWKDKIIKGNSISVLEKLP-----AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ E ++ +I+ + L L +DLI+ DPP+ + + + + +
Sbjct: 1 MREMQNLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKN 60
Query: 71 SWDKFSS---FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWIL 126
+S + F + L+ + +L G+++V + ML
Sbjct: 61 GDIAYSDKVVGMDFIEFLKQRLVLLKELLSEQGSIYVHTDCKIGHYVKVMLDEIFGIQNF 120
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + R NF+ + N + +++ S
Sbjct: 121 RNEITRIKCNPKNFKRMGYGNIKDMILFYSKGKNP 155
>gi|148727180|ref|YP_001285656.1| putative N6-methyltransferase [Aeromonas phage phiO18P]
gi|110349315|gb|ABG73203.1| putative N6-methyltransferase [Aeromonas phage phiO18P]
Length = 358
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-KFSSFEA 80
K++ +S++ L+ +P+ S+DL+ DPPY WD ++ A
Sbjct: 11 KLVNADSLAYLKTMPSHSLDLVAVDPPY---------------FRVKDLDWDNQWPDVTA 55
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
Y + ++ R+LKPNG+L++ S + +L +F +L+ IVW K + + N
Sbjct: 56 YLDWLEMCVIEFARILKPNGSLYLFCSP-GLNADIELLVRKHFKVLSHIVWSKPSGVWNR 114
Query: 141 RGRRFQNAHE 150
+
Sbjct: 115 ADKSTLRNFW 124
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
HP +KP A++ I+ +S++PGD++ D F GSG +G A +L R FIG+E++ +
Sbjct: 283 HPCEKPAAMMEHIVRTSSRPGDVVGDFFMGSGATGKAAWRLGRCFIGVELETPRFSQTCQ 342
Query: 264 RIASVQPLGNIE 275
++
Sbjct: 343 EFQTLVSQEEKH 354
>gi|303234403|ref|ZP_07321042.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
gi|302494519|gb|EFL54286.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
Length = 515
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 14/184 (7%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ IIKGN++ L L V I+ DPPY + ++
Sbjct: 173 NLIIKGNNMLALSSLLERYEGQVKCIYIDPPY----------LFRKKIQEDAFKYNSNYH 222
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ F + L ++LK GT+W+ + + + + + RKS
Sbjct: 223 KSTWLTFIKNRLEMSWKLLKDIGTIWIHTGDDGLHYLKILCDDIFGAEHFVATLPRKSRD 282
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ + ++ S + K D W I + +
Sbjct: 283 GKSDVPFNLSQDFDWILLYSKGFERDSVVGRKVERKYYETDDFPGRPWRIADLTKQTTPK 342
Query: 197 NKDG 200
+
Sbjct: 343 ERPN 346
>gi|15669639|ref|NP_248452.1| type II R/M system modification methyltransferase
[Methanocaldococcus jannaschii DSM 2661]
gi|12229861|sp|Q58843|MTM2_METJA RecName: Full=Modification methylase MjaII; Short=M.MjaII; AltName:
Full=N-4 cytosine-specific methyltransferase MjaII
gi|1592093|gb|AAB99457.1| modification methylase, type II R/M system [Methanocaldococcus
jannaschii DSM 2661]
Length = 530
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 4/196 (2%)
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
I + + + + + K + + + ++
Sbjct: 29 FGKEIKEHNISYLVQYGRVNKYKIKNRVYVDIDEVENYYKKLFFEKRKEWEEKL--GFKL 86
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
D + S ER ++ G + + L+ L GDII+DPF GSGT+
Sbjct: 87 DWDLAFDLLSEKERTKHVHGIHPYKGKFIPQLVEYFLKRHFNVGDIIIDPFMGSGTTLVQ 146
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
++ + IGI++ IA ++ ++ + +T+ L + ++
Sbjct: 147 CMEMGINSIGIDISPFNCLIAEVKLQKYDIQKLKKILLDMLNKTK--EFSKNLGDDEFVK 204
Query: 301 PGQILTNAQGNISATV 316
L T+
Sbjct: 205 EMDKLIEKYNKKYFTL 220
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 24/115 (20%)
Query: 22 KIIKGNSI-----SVLEK-------LPAKSVDLIFADPPYNLQLNG-----------QLY 58
II G+S L+K K +D IF PPY Q++ +
Sbjct: 376 LIINGDSRTVDIEEELKKHPNFYELYKNKKIDGIFTSPPYLGQIDYHEQHAYAYELFDIP 435
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
R D + + + Y L+ +R L + ++++ +
Sbjct: 436 RLDELEI-GPKFKGSSKKAQKEYIEGISDVLINMKRFLNEDAKIFIVVNDKKNLY 489
>gi|304439187|ref|ZP_07399105.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372319|gb|EFM25907.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 340
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 1/147 (0%)
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
N L + ++ N +++ K N
Sbjct: 194 YFNQGHLWYFPPVERFEKLVEYANKYGNPDNKPYYSTNGEKPISKFEWEKMRAKFNCPHG 253
Query: 180 MRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
+ W P +G+ER++ G K H QKP ++ ++ +S++ D+I +PF G ++
Sbjct: 254 YTNVWDRPPLNGTERIKIPSGSKSAHLNQKPLDIMQLLIEASSEFKDVIWEPFGGLFSAS 313
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
A L R G E+ Y + +R
Sbjct: 314 LAATNLNRIAYGAEIDPMYYKVGIERF 340
>gi|25053799|gb|AAN71898.1| putative type III DNA methyltransferase [Helicobacter pylori]
Length = 261
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K I+ DPPYN + Y + +
Sbjct: 166 NYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNYNDN--------------FN 211
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
++ F + L A R L +G ++V + + ++
Sbjct: 212 HSSWLVFMKNRLEAAREFLSDDGVIFVQCDDNEQAYLKVLM 252
>gi|29834108|ref|NP_828742.1| hypothetical protein SAV_7566 [Streptomyces avermitilis MA-4680]
gi|29611233|dbj|BAC75277.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 136
Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 286 PRVAFNLLVERGLIQPGQILTNAQGNI----SATVCADGTLISGTELG---SIHRVGAKV 338
P L++ L++ G +LT Q A V DG L+ S + V
Sbjct: 45 PHGPLADLMQADLLKAGTVLTFHQRRANRSGRAVVTPDGQLVVDGHATPYPSPSKAAEAV 104
Query: 339 SGSETCNGWNFWYFEKLGELHSINTLRILV 368
+G+ NGW W+ E L + LR +
Sbjct: 105 TGN-VINGWTLWHVEDGRTL---DVLRREL 130
>gi|261403293|ref|YP_003247517.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
M7]
gi|261370286|gb|ACX73035.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus vulcanius
M7]
Length = 530
Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
ER ++ G + + L L GDI++DPF GSGT+ ++ + IGI
Sbjct: 98 KERTKHVHGIHPYKGKFIPQLTEYFLKRHFNVGDIVIDPFMGSGTTLVQCMEMGINSIGI 157
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
++ IA ++ ++ + +T R L + I+ L
Sbjct: 158 DISPFNCLIAEVKLQKYDIQKLKKILLDMLNKT--REFSKNLGDEEFIKEMDKLIKKYNK 215
Query: 312 ISATV 316
T+
Sbjct: 216 KYFTL 220
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 24/112 (21%)
Query: 22 KIIKGNSI-----SVLEK-------LPAKSVDLIFADPPYNLQLNG-----------QLY 58
II G+S L+K K +D IF PPY Q++ +
Sbjct: 376 LIINGDSRTVDIEEELKKHPNFYELYKNKKIDGIFTSPPYLGQIDYHEQHAYAYELFDIP 435
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
R D + A + + Y L+ ++ LK + ++++ +
Sbjct: 436 RLDELEIGA-KFKGSSKKAQKEYIEGMSDVLINMKKFLKNDAKIFIVVNDKK 486
>gi|269977564|ref|ZP_06184531.1| DNA methylase [Mobiluncus mulieris 28-1]
gi|269934167|gb|EEZ90734.1| DNA methylase [Mobiluncus mulieris 28-1]
Length = 454
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
L V +I+ DPPYN A D+ +K +A+ A + L+ R
Sbjct: 87 LVKGQVKMIYIDPPYNTGNTF-----------AYHDARNK----DAWAAMMQPRLVLARE 131
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN----AHE 150
L+ +G +++ + + + + + + N +GR+ N HE
Sbjct: 132 ALRDDGLIFISIDINEFAELKALCDRVFG---AENFVANFVWVSNLKGRQLGNGPAGTHE 188
Query: 151 TLIWASP 157
++ +
Sbjct: 189 YILCYAR 195
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ T KP LL+ +L +++ PGD++LD F GSG+ G A R FI +++
Sbjct: 363 IFETPKPVDLLAVLLEAASAPGDLVLDFFAGSGSFGVAAADGLRRFILVQL 413
>gi|284008032|emb|CBA74131.1| type III restriction-modification system: methylase [Arsenophonus
nasoniae]
Length = 300
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 18/159 (11%)
Query: 1 MSQKNSLAINENQNSIFEW---KDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLN 54
++ + + +I ++ + IIKGN++ VL L S+ +F DPPY
Sbjct: 151 LTNAKRYTKDNIEENIIDFHNNDNLIIKGNNLIVLHSLKVKYQSSIKCVFIDPPYYF--- 207
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
H A T ++ ++ F + L + ++ +G +++ S +
Sbjct: 208 -------HDTKPADTFIYNSNFKLSSWLVFMKNRLEIAKDLMCSDGVIYITISDDGAHYL 260
Query: 115 GTMLQNLN--FWILNDIVWRKSNPMPNFRGRRFQNAHET 151
++ + + D++W+ + + + H
Sbjct: 261 KVLMDQVFSPENFIADVIWQSRKSISSDGLISISSNHVH 299
>gi|332672827|gb|AEE69644.1| type III restriction enzyme M protein [Helicobacter pylori 83]
Length = 136
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 17/125 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYR 59
K+ +N S E +IK + L L +++D I+ DPPYN Q N +Y
Sbjct: 20 FKDLEEEIKNLFSENEINGTLIKSENYQALNSLKNRYKETIDCIYIDPPYNTQNNEFIYA 79
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ ++ + L ++L G ++V + + T++
Sbjct: 80 DNFKR--------------SSWLSMIENRLELAHKLLNNKGVMFVSIDDNEQAYLKTLMD 125
Query: 120 NLNFW 124
+
Sbjct: 126 EVFNG 130
>gi|118576278|ref|YP_876021.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194799|gb|ABK77717.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 288
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 81/265 (30%), Gaps = 32/265 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+++ N + INE + + N E++ S+D++ DPP
Sbjct: 15 LARMNKMGINEVNIDG----NTLKLANGFEECERIANDSIDVLITDPP------------ 58
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
++ + S K G+ + ++ N
Sbjct: 59 SNTYYHFLDKIVPSRISNRGMLHPMP------INPAKRFGSELLASNWVN---------F 103
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ I ++ N+ + L + + +
Sbjct: 104 VLPKIRKRVIIFSLFETKNYIQELKKLGFNNLKLFLWEKSSLFDDHIVTGSEHIIVGEKT 163
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+++ R + ++P QKP L+ + + T D ILDPF GSGT+
Sbjct: 164 NNEFKENFIEFKYR-SSLSEYVMYPEQKPLQLIEKSIKHFTDINDSILDPFGGSGTTMLA 222
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRI 265
+ K R E + ++A R+
Sbjct: 223 SMKTGRKSTTFEWDECVYNMAKCRV 247
>gi|148927601|ref|ZP_01811069.1| DNA methylase N-4/N-6 domain protein [candidate division TM7
genomosp. GTL1]
gi|147887050|gb|EDK72550.1| DNA methylase N-4/N-6 domain protein [candidate division TM7
genomosp. GTL1]
Length = 165
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 2/164 (1%)
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKA 173
++ F + M G N + L + Y
Sbjct: 4 WHLPNRHQGFAAKYKFFSKHDIAMVGASGTVEYNHDKELDGLQEEYETALYAIAGKPQWE 63
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
E + S+ G+ + KP +L + TK D++++PF G
Sbjct: 64 GYEGGKKYQPTDFIEFQASDE--KHSGQGVIFGTKPIEILVPYIKVLTKRDDLVVEPFCG 121
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
SG++ + KL+R +E Y ++A KR + L +LT
Sbjct: 122 SGSTLIASTKLKRRCYIMEKSPVYAEVALKRWEKLTGLKREKLT 165
>gi|330818897|ref|YP_004351114.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
gi|327374439|gb|AEA65791.1| DNA methylase N-4/N-6 domain protein [Burkholderia gladioli BSR3]
Length = 414
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/285 (16%), Positives = 72/285 (25%), Gaps = 70/285 (24%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
L+ PPY L++ P E Y F L + L P G
Sbjct: 136 LVLTSPPYPLRMPRAYGNP----------------PVEEYIDFVCRILEPMLKHLVPGGN 179
Query: 102 LWVIGSYHN-------------------IFRIGTMLQNLNFW--------------ILND 128
+ + S + R+G L + W +
Sbjct: 180 VVLNVSNDIFESKSPARSTYLEELTLALVKRLGLHLMDRLVWASNKPPGPVQWASKMRMQ 239
Query: 129 IVWRKSNPMPNFRG------------RRFQNAHETLI-----WASPSPKAKGYTFNYDAL 171
+ + + N+H+ LI + Y A
Sbjct: 240 LNTGYEPVLWFCNSPNECIADNRRVLQPHTNSHQKLIAQGGIERARRNGDGAYRLRPGAY 299
Query: 172 KAANEDVQMRSDWLIPICSGSERLRN----KDGEKLHPTQKPEALLSRILVSSTKPGDII 227
E R+ +R G H P L I+ T ++
Sbjct: 300 GKPTEGRIPRNVLQFGNTCVDQRAHKLRVKNMGLPSHGAPMPLNLARFIVRWMTAVEQLV 359
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
DP FGS T+G + R + G E+ Y A +R
Sbjct: 360 ADPCFGSNTTGKACELEGRRWAGTEIVPQYARGAAERFTDCNGFE 404
>gi|320458356|dbj|BAJ68977.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length = 392
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
+ T A + + +G DG LHPT KP L+
Sbjct: 250 TKPGDGWSMTHTGAEYDDAGGASRFYPVFRYCPKAGPGERLTVDG-ILHPTVKPLELMRW 308
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
++ T P ++L+PF GSG + + + EM DY+
Sbjct: 309 LVRLVTPPDGLVLEPFAGSGATLEACRIEDVRCVAAEMDSDYV 351
>gi|291288948|ref|YP_003517451.1| hypothetical protein pKF94_036 [Klebsiella pneumoniae]
gi|290792080|gb|ADD63406.1| hypothetical protein pKF94-036 [Klebsiella pneumoniae]
Length = 62
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I GN I V+ P ++VDLI DPPY L G R + VTD W + ++
Sbjct: 3 RFILGNCIDVMRGFPDRAVDLIVTDPPY---LVGFKDRQGRQIAGDVTDEWLQPATPGD 58
>gi|51892572|ref|YP_075263.1| hypothetical protein STH1434 [Symbiobacterium thermophilum IAM
14863]
gi|51856261|dbj|BAD40419.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 297
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
H QKP L + ++ + TK G+ +LDPF G G + A R +G+E+ +I I
Sbjct: 62 HGGQKPPELCADLIRTFTKSGERVLDPFMGVGGTLIGATISGRRAVGVEINPRWIAI 118
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNL-----QLNGQLYRPDHSLVDAVTDSWDKF--- 75
+ G+S +VL +S DL+ D PY + G+ R D V+ F
Sbjct: 134 VCGDSRTVLAGFEPESFDLVLTDVPYWNMDRRRRSKGKFKRADGPAVEPRRSKLSPFAPD 193
Query: 76 ---------SSFEAYDAFTRAWLLACRRVLKPNGTLWVI-GSYHNIFRIGTM 117
E + RA A R+L+P + V G ++ R +
Sbjct: 194 ETETDVTGMQGKEEWLDTMRAVFAAALRLLRPRRYMAVFIGDMYHSGRYHML 245
>gi|8346570|emb|CAB93763.1| hypothetical protein [Enterobacteria phage phiP27]
Length = 312
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP +KP +L +I+ +S++PGD++ D F GSG++ A L R IG+E++ +
Sbjct: 243 HPCEKPAEMLRQIITTSSRPGDLVADFFMGSGSTVKAAMALGRRAIGVELETGRFEQT 300
Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 72 WD-KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
WD ++ + Y + L RVLKP G+L++ H + ++ F +LN I+
Sbjct: 6 WDNQWKGDDDYLKWLDQCLAQFWRVLKPAGSLYLFCG-HRLASDIEIMMRERFNVLNHII 64
Query: 131 WRKSNPMPNFRGRRFQNAHE 150
W K + N + A+
Sbjct: 65 WAKPSGRWNGCNKESLRAYF 84
>gi|225351893|ref|ZP_03742916.1| hypothetical protein BIFPSEUDO_03497 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157140|gb|EEG70479.1| hypothetical protein BIFPSEUDO_03497 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 369
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 20/165 (12%)
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
L + + + + R + + + + +N+
Sbjct: 194 WLWYWPPGEMVERMAEYTKANGKPTNRPYFSVDGHTEITAERWDSLRAVWNHVNG----- 248
Query: 177 DVQMRSDWLIPICSGSERLRN------------KDGEKLHPTQKPEALLSRILVSSTKPG 224
+ + W P ERL+ H QKP + R + +++ G
Sbjct: 249 ---LTNVWSRPPLHDGERLKGTLQRSAPRVYKPSKQSAAHLNQKPLDFMDRQIHAASNKG 305
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
D++ +PF G ++ A R E+ +++ ++A R+A +
Sbjct: 306 DVVWEPFGGLASASVAAVLTGRIAYTAEIDEEFQNLALGRLAEAE 350
>gi|284924504|emb|CBG37640.1| putative DNA modification methylase [Escherichia coli 042]
Length = 1039
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 21/128 (16%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ G++ VL + VD I+ DPPYN + LY+ + D
Sbjct: 476 LYSGDNYQVLNLIKIKYNNKVDGIYIDPPYNTNASEILYK------NGYKD--------S 521
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
++ + + L + +LK N + + + +L+ V + N
Sbjct: 522 SWCSLMSSRLEISKSLLKENAATCTTIDEYEVANLELLLKETFTGYQIRPVVIEY----N 577
Query: 140 FRGRRFQN 147
RGR N
Sbjct: 578 HRGRVKSN 585
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 9/122 (7%)
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL- 213
+ K + A K L GSE L + P+++
Sbjct: 700 WAKRIKGEIQIHYRQAGKPKMRKSVWIGPKLDASTYGSELLNSLFNVTQINFSFPKSIYA 759
Query: 214 -SRILVSSTK-PGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRI 265
L S + LD F GSGT+G + R F +E + + + R+
Sbjct: 760 VKECLESLSNSKYAHFLDYFAGSGTTGHAVVDMNRDDNGFRKFSLVEQGEYFYSVTLPRV 819
Query: 266 AS 267
Sbjct: 820 KK 821
>gi|311977257|gb|ADQ20509.1| M.BseYI [Bacillus sp. 2521]
Length = 915
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
E + + DW S L + +P + + + +++ + P D++LDPF GSG
Sbjct: 546 EGINLTDDWDFHDEKPSNGLHSIHP---YPAKFIPQIPHKAILNWSNPNDVVLDPFCGSG 602
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
T+ A R+ IG++ I+ + S I L
Sbjct: 603 TTLLEAITNNRTAIGVDNNSVACLISRAKTNSYSRDDLIAL 643
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYR------PDHSLVDAVTDSWDKFSSF------- 78
L+ + + SVDLI PPY + Y D + A K +F
Sbjct: 769 LDFIESNSVDLIVTSPPYLNAYDYHKYHRHRIHWIDGDVNLARDYEIGKHDTFTRPNATP 828
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ Y + RVLK L +I
Sbjct: 829 DKYFEDMFSCFNEWNRVLKNQSKLCIIIGD 858
>gi|255021942|ref|ZP_05293950.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
gi|254968578|gb|EET26132.1| DNA methylase [Acidithiobacillus caldus ATCC 51756]
Length = 481
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 42/218 (19%), Positives = 73/218 (33%), Gaps = 23/218 (10%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNL--QLNGQLYRPDH-----------SLVDAVTDSW 72
G+ + VL LP D + DPPY+L + G R + + + ++W
Sbjct: 27 GDLLDVLPTLPENHFDGVLCDPPYHLTQKSRGGSTRKANEDDPYGRHGVGTDRGFMGETW 86
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D AF A RV+KP G L G R+ ++ F + + ++W
Sbjct: 87 DGGD-----IAFRPETWRAVMRVMKPGGYLMAFGGSRTFHRLAVAFEDAGFVLADTLMWL 141
Query: 133 KSNPMP-NFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
N P N + + H + + N D ++ A ++ W
Sbjct: 142 YGNGFPKNLDLSKAMDRHFGMQRPVVGKRKHPTLKNSDLVEEAANAAHGKNFWRREWDVT 201
Query: 192 SERLRNKDGEKLHPTQ-KPEALLSRILVSSTKPGDIIL 228
+ + T KP ++ KPG+
Sbjct: 202 LPGHADSARWNGYGTALKP---AYEPILLCRKPGEKTY 236
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 186 IPICSGSERLRNKDGEKL---HPTQKPEALLSRI---LVSSTKPGD--IILDPFFGSGTS 237
G+ R ++ EK+ HPT KP L + ++ ++ D +L PF G+G+
Sbjct: 387 PRYAHGTTLRRIENSEKVGNDHPTLKPIDLTRYLANLILPPSRGDDSRRLLVPFSGAGSE 446
Query: 238 GAVAKKLRRS-FIGIEMKQDYIDIATKRIASV 268
A + +GIE + Y +IA KR+
Sbjct: 447 MIGALQAGWDTVLGIEQSEHYAEIARKRLIYW 478
>gi|147677458|ref|YP_001211673.1| hypothetical protein PTH_1123 [Pelotomaculum thermopropionicum SI]
gi|146273555|dbj|BAF59304.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 413
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ ER R K +LHP + L+ L KPG +LDPF GSGT+
Sbjct: 39 NLNWREVDLPERERTKHVHRLHPYLGKFIPQLVEIFLRKYFKPGQTVLDPFCGSGTTLVQ 98
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
A +L + IG ++ + + + A P+ + KRTE
Sbjct: 99 ANELGINSIGCDISAFNVLLCRAKTAEYDPVKAQKEIQDILKRTE 143
>gi|156741279|ref|YP_001431408.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156232607|gb|ABU57390.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 356
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 5/174 (2%)
Query: 91 ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+ L+ + Y G + + D +W P R + N +
Sbjct: 175 NLKEWLRKEWDRTGLPIYKTNEACGVVNAASRKYFTKDHLWYALPPEIFIRMVSYANEYG 234
Query: 151 T---LIWASPSPKAKGYTFNYDALKAANEDVQ-MRSDWLIPICSGSERLRNKDGEK-LHP 205
+ S K Y+ + + + + W P ER+R K H
Sbjct: 235 DSKGRPYFSFDGKRPANQQEYEKIFPTFKGKYGITNVWNHPPLHNRERVRFPGSSKYAHL 294
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
QKP L+ I+ SS+ GD+I +PF G T+G VA R+ E+ D
Sbjct: 295 NQKPVNLMELIIESSSNLGDVIWEPFGGLCTAGLVAYLTSRTAYCAEIDDHIYD 348
>gi|109947283|ref|YP_664511.1| methyltransferase fragment 1 [Helicobacter acinonychis str. Sheeba]
gi|109714504|emb|CAJ99512.1| methyltransferase fragment 1 [Helicobacter acinonychis str. Sheeba]
Length = 213
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 17/125 (13%)
Query: 1 MSQKNSLAINENQNSIF----EWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQL 53
++ N++ + NS+ K K+I G++ + + L K + +I+ DPPY
Sbjct: 68 IAGDNTIKYFKKNNSLSFDNGGIKHKLIIGDNYNAINNLLIQYRKQIKVIYIDPPYGKDS 127
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
G+ + +++ + L +++LK +G ++ N
Sbjct: 128 MGESAQTNYTNAIKRDNL----------LTMLYNRLQLAKQLLKDDGVIFCSIDDRNHAY 177
Query: 114 IGTML 118
+ +
Sbjct: 178 VKCLF 182
>gi|315425237|dbj|BAJ46906.1| DNA methylase [Candidatus Caldiarchaeum subterraneum]
Length = 325
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 43/152 (28%), Gaps = 17/152 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ G++ L + +SVDLI PPY + RP+ + E Y
Sbjct: 163 KVYHGDAAK-LNIIEDESVDLIATHPPYWNIIPYSRKRPEG--------DLSAYRKLEDY 213
Query: 82 DAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILN------DIVWRKS 134
RVLKP +IG + + L + + +
Sbjct: 214 LGKMMQIARESYRVLKPGRYCAILIGDTRKHKHYVPISTYVMLKFLQAGFVLAEDIIKLQ 273
Query: 135 NPMPNFRGRRFQNAHETLIWASPSPKAKGYTF 166
+ M R + Y F
Sbjct: 274 HKMKTTREKWSGKN-FEQYGFHKIAHEHLYIF 304
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
+ +++ TKPG+++LD GSGT+ A L R+ IG+++ + + R+
Sbjct: 94 VPRNLILKYTKPGELVLDQMVGSGTTLVEATLLGRNAIGVDINYEACILTLDRLNFEFHP 153
Query: 272 GNIE 275
+ +
Sbjct: 154 LDEQ 157
>gi|261402465|ref|YP_003246689.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus
vulcanius M7]
gi|261369458|gb|ACX72207.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus
vulcanius M7]
Length = 37
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
+KI + + +++L KS+D+I PPYN+ +
Sbjct: 4 NKIYCMDCLEGMKQLKDKSIDVIITSPPYNISIR 37
>gi|315619294|gb|EFU99855.1| DNA methylase domain protein [Escherichia coli 3431]
Length = 40
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYN 50
+I + + ++ LP SVDLI DPPY
Sbjct: 12 LINADCLEFIQTLPENSVDLIVTDPPYF 39
>gi|182682260|ref|YP_001830420.1| hypothetical protein XfasM23_1742 [Xylella fastidiosa M23]
gi|182632370|gb|ACB93146.1| hypothetical protein XfasM23_1742 [Xylella fastidiosa M23]
gi|307578536|gb|ADN62505.1| hypothetical protein XFLM_02530 [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 83
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ + NS + I G+ I V++ LPA+S +I PPYNL+ + D
Sbjct: 25 KLPKGDNSARNLRGTIHSGDCIKVMQTLPAESFRVIVTSPPYNLKNSTGNGMKDG 79
>gi|329121579|ref|ZP_08250200.1| type III restriction/modification enzyme [Dialister micraerophilus
DSM 19965]
gi|327468734|gb|EGF14211.1| type III restriction/modification enzyme [Dialister micraerophilus
DSM 19965]
Length = 127
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
V I+ DPPYN + Y + + + F + L R++L
Sbjct: 40 EGKVKCIYIDPPYNTGNDSFNYNDN--------------FNHSTWLTFMKNRLELARKLL 85
Query: 97 KPNGTLWVIGSYHNIFRIGTML 118
+ +G ++V + + ++
Sbjct: 86 RDDGVIFVQCDDNEQAYLKVLM 107
>gi|330465467|ref|YP_004403210.1| DNA methylase N-4/N-6 domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328808438|gb|AEB42610.1| DNA methylase N-4/N-6 domain-containing protein [Verrucosispora
maris AB-18-032]
Length = 331
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 48/127 (37%)
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
R + ASP +G +YD A+ D R R
Sbjct: 8 RDPGHPDPNTPTASPGNDYQGRHHDYDDRHRADPDGLSVWTTAQTTGPVQRRGRYVPESV 67
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HP + A+ + + + T+PGD++LDP G GT+ A R GIE + + +IA
Sbjct: 68 KHPARMLPAIAAHAIDAYTQPGDLVLDPMCGIGTTLVEAVHAGRDAFGIEYEPQWSNIAD 127
Query: 263 KRIASVQ 269
I
Sbjct: 128 ANIRHAH 134
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-- 77
+I+G++ ++ +P V L+ PPY L RP V D ++
Sbjct: 144 VIRGDATRLISLVPKALTGQVALVVTSPPYG-PTVHGLVRPGADGVVKYDDRYNDGEDRG 202
Query: 78 FEAYDAFT------RAWLLACRRVLKPNGTLWV 104
AY T L C +L+P G + V
Sbjct: 203 NLAYRDLTGLADGFTQILAGCATLLRPGGVVVV 235
>gi|186681524|ref|YP_001864720.1| hypothetical protein Npun_F1051 [Nostoc punctiforme PCC 73102]
gi|186463976|gb|ACC79777.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length = 498
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KP L+ ++ + TK GDI+LDPF GSG A +R FIGI++ I+++ I
Sbjct: 41 KKPIEPLAFLIENLTKKGDIVLDPFLGSGLVAREAAIRQRRFIGIDINPIAIELSNLLIG 100
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
P E + + + L+E G L N
Sbjct: 101 LPSPNILKEAIDELERSVKSEIYKTYLLEDGKF-ATHYLWNGNK 143
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADP------PY-------NLQLNGQLYRPDHSLVDAVT 69
II+G++ +L P ++ L+ DP PY N ++ + D S V+
Sbjct: 324 IIQGDNRKILNNCPDGTISLVLTDPPHSDRIPYLELSEMWNSLIDKK---SDFSHEIVVS 380
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
++ + + Y ++ R+LKP+G L + +
Sbjct: 381 NARIRLKDKKLYLHEMTEFMQTATRILKPSGILALFFNAR 420
>gi|206599599|ref|YP_002242038.1| gp55 [Mycobacterium phage Brujita]
gi|206282748|gb|ACI06269.1| gp55 [Mycobacterium phage Brujita]
gi|302858490|gb|ADL71237.1| gp55 [Mycobacterium phage island3]
Length = 216
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/251 (13%), Positives = 69/251 (27%), Gaps = 55/251 (21%)
Query: 22 KIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ G+ + ++ L+ DPPY + W +
Sbjct: 11 TLYHGDCREI-----DAWEAAHLLLTDPPYGI-------------------DWPPRTGTS 46
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ + A R + I R G + F +
Sbjct: 47 RHQSIANDSDTAARDYV--------------IGRWGHVKPAYVFGSPLLAPPYGTKQTLV 92
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNY-DALKAANEDVQMRSDWLIPICSGSERLRNK 198
+R + +A N+ + + + + G +
Sbjct: 93 WRKPGDSGLTGQIGGWRRDWEAIYMLGNWPRDSRPLRSGIITTNVGMSTYQHGHAHGKPV 152
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
++ P G + DPF GSG++ A+ + R IG+E ++ Y
Sbjct: 153 ALLEVLLLAAP--------------GGAVADPFAGSGSTLLAARNVGRKAIGVEYEERYC 198
Query: 259 DIATKRIASVQ 269
+I +R+ +
Sbjct: 199 EIIARRLDQMC 209
>gi|146295019|ref|YP_001185443.1| DNA methylase N-4/N-6 domain-containing protein [Shewanella
putrefaciens CN-32]
gi|145566709|gb|ABP77644.1| DNA methylase N-4/N-6 domain protein [Shewanella putrefaciens
CN-32]
Length = 633
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
MP++ F + L P ++ T A + D+ +G+ R
Sbjct: 204 MPSWASDIFLKVMQDLECFKPHFQSISNT----ACSVIDNDITSEDHLDYKWTTGTVEGR 259
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
G + P +++ G ++LDPF G GT V+ R IG ++
Sbjct: 260 W-SGFGPYYAMFPVDFARKVITKYCPVGGVVLDPFCGRGTVPFVSMATGRYAIGCDINPV 318
Query: 257 YIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
A P +L + + + V+++ + Q
Sbjct: 319 AWLYAKV---KTDPYIKHQLLIKRAREIQSMVSYDDMQPENEFQ 359
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 22 KIIKGNSISVLEKLPAK-SVDLIFADPPY----NLQLNGQ--LYRPDHSLVDAVTDSWDK 74
+I+ G++ +L K K DLI PPY N + + L+ +DSW +
Sbjct: 463 QILLGDNRQLLSKYRNKQKADLILTSPPYYGVTNYRYDNWIRLWLLGEGSSLPDSDSWAR 522
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
S Y + C++ K + ++V T+ W D+ +
Sbjct: 523 HSDRSEYFKLLKETFYHCKKRAKADAVIYVRTDARKFTLETTIKILKETWPDKDLFYSYD 582
>gi|237720903|ref|ZP_04551384.1| LOW QUALITY PROTEIN: modification methylase [Bacteroides sp. 2_2_4]
gi|229449738|gb|EEO55529.1| LOW QUALITY PROTEIN: modification methylase [Bacteroides sp. 2_2_4]
Length = 165
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 33/73 (45%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ G +H QKP L + IL + K GD I D GSG+S A L F E+ ++
Sbjct: 74 GERGGNIHRCQKPVKLYAEILRKNAKEGDKIFDSHLGSGSSRIAAYGLGFDFYATEIDEE 133
Query: 257 YIDIATKRIASVQ 269
Y + +R
Sbjct: 134 YFEAQEERFHREC 146
>gi|298253554|ref|ZP_06977344.1| DNA methylase [Gardnerella vaginalis 5-1]
gi|297532321|gb|EFH71209.1| DNA methylase [Gardnerella vaginalis 5-1]
Length = 215
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 20 KDKIIKGNS--ISVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ +II G++ + + L V+L+ DPPYN+ G + + D
Sbjct: 120 RHRIICGDATKLETYKTLLENTKVNLVVTDPPYNVNYEGAAGKIKN----------DNME 169
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
+ Y F + + + + +++V
Sbjct: 170 DDKFY-QFLFNSFVNMEQAMADDASIYVF 197
>gi|307254642|ref|ZP_07536471.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306862387|gb|EFM94352.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
Length = 130
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG 55
+ I+G ++ VL+ L S+ +I+ DPPYN +
Sbjct: 67 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDF 104
>gi|83589722|ref|YP_429731.1| hypothetical protein Moth_0871 [Moorella thermoacetica ATCC 39073]
gi|83572636|gb|ABC19188.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
Length = 281
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ + + K H KP +++ I+ TK G+++LDPF G G
Sbjct: 13 DGREWLYWTDTLYITAYPPDATHPLRKKHGAMKPPEVMAEIIRFFTKKGELVLDPFAGVG 72
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDI 260
+ A R+ +G E+ ++DI
Sbjct: 73 GTLLGAALAGRASLGFELDPRWVDI 97
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQ---------LNGQLYRPDHSLVDAVTDSWDKF 75
+G+ + +L +L +SV + DPPY + N + P S +
Sbjct: 131 QGDCLELLRQLEGESVAAVITDPPYGINHGARGFPGETNFNMTSPRRS------GDLGQA 184
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
E++ A + RVL P L ++
Sbjct: 185 PDLESFLARLQDIGREIHRVLWPGRYLVMLVGDR 218
>gi|163783394|ref|ZP_02178386.1| Adenine-specific DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159881316|gb|EDP74828.1| Adenine-specific DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 908
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 18/141 (12%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++ + L + + V ++ DPPYN + + +D V
Sbjct: 400 LVHSENYQALNTMLPKFREKVRCVYIDPPYNS---------ESTEIDYVNQY-----KHS 445
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
++ + L + L +G + V + + R+ +L + V R SNP
Sbjct: 446 SWMSLMDNRLALAKDFLCHDGIICVSIDDNEVIRLKEILGLYFSEEVATCVIR-SNPAGR 504
Query: 140 FRGRRFQNAHETLIWASPSPK 160
+ +HE ++ + S K
Sbjct: 505 STPKGVSVSHEYAVFFAKSEK 525
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 26/198 (13%)
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
LK Y N + + + N + P P+ + H
Sbjct: 561 LKEEAPRMYYPIYINKTGRTWRIPRMRWCEKNKVWEILEEPNPDEVVVWPTDEHGQPRRW 620
Query: 156 SPSPKAKGYTFNYDALKA-------------ANEDVQMRSDWLIPIC----SGSERLRNK 198
+P+ + N + E + + W P G+ L++
Sbjct: 621 KWTPERLMASRNEVKVDYDRFGQLTLYIKSRMPEGITPSTWWDRPEYSATDYGTRGLKDL 680
Query: 199 DG-EKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLR------RSFI 249
G + K L+ + S+ D +LD F GSGT+ L R +I
Sbjct: 681 FGYHGIFSYPKAVNLVMDCIRVSSGNSDNAFVLDFFAGSGTTAHAVINLNREDGGKRKYI 740
Query: 250 GIEMKQDYIDIATKRIAS 267
+EM + + RI
Sbjct: 741 LVEMADYFNTVLLPRIKK 758
>gi|308067599|ref|YP_003869204.1| adenine specific DNA methylase Mod [Paenibacillus polymyxa E681]
gi|305856878|gb|ADM68666.1| Adenine specific DNA methylase Mod [Paenibacillus polymyxa E681]
Length = 1042
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 34/177 (19%)
Query: 3 QKNSLAINENQNSIFEWKDKII---------------KGNSISVLEKLPA---KSVDLIF 44
++N + + ++ FE+KD++I G + L L K VD I
Sbjct: 428 RQNQNLVVDTRHFTFEFKDRLIASIDKLDELTGGLMVHGENFQALNFLLETYEKRVDAIQ 487
Query: 45 ADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
DPPYN +G LY+ ++ ++ + + ++L +G+
Sbjct: 488 IDPPYNTDTSGFLYKNNYR--------------HSSWASMMSERIFVAEQLLDDSGSFRC 533
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ + + + IVW K NPM +G HE +I+ + K+
Sbjct: 534 HIDENEYELLFNIFEQFGRGNAGTIVWNKLNPMLGRKG--VATQHEYIIYRTNFDKS 588
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 9/158 (5%)
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
F L + +K P+P R +I K T +ED Q +
Sbjct: 664 YFIPLIHPITKKPCPVPPNGWSRKPETMLEMINNGTIIFGKDETTQPQKKVELSEDSQRQ 723
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
++ + + + G + P P ++ ++ +++ I+LD F GSGT+G
Sbjct: 724 IASVLSEGKSGKAVLDHLGLE-FPYAHPVSMYETLISANSP--SIVLDYFAGSGTTGHAV 780
Query: 242 KK------LRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R +I +EM + + + R+ V N
Sbjct: 781 INLNREDGCNRKYILVEMGEHFNTVTRPRMKKVVYSDN 818
>gi|167565743|ref|ZP_02358659.1| site-specific DNA methyltransferase [Burkholderia oklahomensis
EO147]
Length = 143
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K H T+KP + ++ G ++ D F GSGT A A++ R +IG E Y IA
Sbjct: 69 KQHVTEKPLDIAREVVRLV-PVGGVVCDLFAGSGTFLAAAREAGRHWIGCETNAAYHAIA 127
Query: 262 TKRIA 266
+ R+
Sbjct: 128 SARLD 132
>gi|332289951|ref|YP_004420803.1| DNA methylase [Gallibacterium anatis UMN179]
gi|330432847|gb|AEC17906.1| DNA methylase [Gallibacterium anatis UMN179]
Length = 258
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 45/95 (47%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
ED + + + +R + + ++ + +++ T+ GD +LD F GSG
Sbjct: 3 EDWKNSDLNVDSLWIIDKRDKRGKHKNVYHGNFIPQIPYQLIKRYTEEGDTVLDLFMGSG 62
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
T+ + L R+FIG ++ Q ID +++S P
Sbjct: 63 TTLYECENLNRNFIGFDINQSIIDYVFSQMSSATP 97
>gi|89885966|ref|YP_516164.1| DNA methylase N-4/N-6 [Rhodoferax ferrireducens T118]
gi|89347964|gb|ABD72166.1| DNA methylase N-4/N-6 [Rhodoferax ferrireducens T118]
Length = 416
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/275 (14%), Positives = 78/275 (28%), Gaps = 41/275 (14%)
Query: 40 VDLIFADPPY---NLQLNGQL-----------------YRPDHSLVDAVTDSWDKFSSFE 79
+ L+ PPY N + G + D V A+ S D F +
Sbjct: 140 ISLVLTSPPYPLANPRAYGNVPIAQYVDWLCSMLEPLVRNLDDGAVIALNVSNDVFETKS 199
Query: 80 ----AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW---- 131
Y L + K + +W + L+ + V+
Sbjct: 200 PARSTYRERLVIALCDRFALFKMDEIIWNCPNKPPGPIQWASLERFQLNTAWEPVYVFTN 259
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAK-------GYTFNYDALKAANEDVQMRSDW 184
+ N R + + + + Y + ++
Sbjct: 260 NPHRCLANNRRVLQAHTDRHMALMKKGGETRTRTNSDGAYRIYPGSYGTLTAGRIPKNVI 319
Query: 185 LIPICSGSERLRN------KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
L+ +DG LH P L + ++ ++ G ++ D F G T+G
Sbjct: 320 TCSNSKSDPDLKRAKAMARQDGLPLHGAPMPLELANFLVQYLSEEGSLVADLFAGWNTTG 379
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
A+ R +I E +Y+ + +R +
Sbjct: 380 YAAQINGRRWISAEKHGEYVAGSAERFSRFNGFER 414
>gi|220919084|ref|YP_002494388.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219956938|gb|ACL67322.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 520
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 7/134 (5%)
Query: 39 SVDLIFADPPYNLQLNGQLY---RPDHSLVDAVTDSWDKFSS---FEAYDAFTRAWLLAC 92
SVD+ + DPPYN N Y R + + + + L
Sbjct: 11 SVDVAYIDPPYNRGGNDFRYSDARYHDPNAEGKDAEYVSNEDGGRHTKWLNYMAPRLAMI 70
Query: 93 RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
R ++K G ++V + +FR+G ++ + + N R HE +
Sbjct: 71 RELMKDTGVIFVSINDIELFRLGMLMDEIFDEKNRIGIVCWKGSADNNPSR-IAIEHEYV 129
Query: 153 IWASPSPKAKGYTF 166
+ + +
Sbjct: 130 LCYAKRASELPKVW 143
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/251 (18%), Positives = 84/251 (33%), Gaps = 19/251 (7%)
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
DA D S++A+ +A R + G Y +R+ +
Sbjct: 163 DAAKTQDDLAKSWKAFLKDNKASFERLGRYTAVD----ERGPYQVGYRVHNTHPAGYRYD 218
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-MRSDW 184
+ V +K +P+ R ++ + LI K + +E +RS
Sbjct: 219 IIHPVTKKPCRIPSNGYRYTESTMKRLIDEGRIIFGKTHEQIVQMKDYLDEYRDTLRSVV 278
Query: 185 LIPICSGSERLRNKDGEK--LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ G+ L+ G+K KP L+ ++ ++ ++LD F GSGT+
Sbjct: 279 SLDARKGAYTLKALFGDKFDGFDYPKPVELIELLVGAAGGKDALVLDAFAGSGTTAHAVM 338
Query: 243 KLR------RSFIGIE----MKQDYIDIATKRIASVQPLGN--IELTVLTGKRTEPRVAF 290
+L R FI IE + + R+ + + L R R A
Sbjct: 339 RLNKIDGGRRRFILIEEGNGKDRYARTLIVPRLRKAAKRDDLKCDFRFLKTGRELDRDAI 398
Query: 291 NLLVERGLIQP 301
L +I
Sbjct: 399 LGLERDRIINV 409
>gi|307249915|ref|ZP_07531888.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858043|gb|EFM90126.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 962
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 68/208 (32%), Gaps = 24/208 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+NE + + +I ++ L L + V I+ DPPYN + ++ +
Sbjct: 387 VLNELHDLDEKTNGLLIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNAS-EIIYKNGYK 445
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
++++ + R++L G Y +F G L
Sbjct: 446 -------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKNLDEEFGE 492
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANED 177
DIV NP R F + E +I +PSP + + +ED
Sbjct: 493 LSRVDIVSILINPKGRQHERFFSASSEYMIVYTPSPNSARFNQTTIDAEKRKTFNLFDED 552
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ R S LR + + +P
Sbjct: 553 KKERYRLDEFARIRSSTLRKEKPKFFYP 580
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
P +G+ L+ G + K + + ++K D ILD F GSGT+
Sbjct: 654 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 713
Query: 240 VAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
R +I +E +Y D ++P + K +P+
Sbjct: 714 AVINLNREDGGNRKYILVEQG-EYFDT------VLKPRVQKVIFAKEWKDGKPQADNGAF 766
>gi|308050408|ref|YP_003913974.1| DNA methylase N-4/N-6 domain protein [Ferrimonas balearica DSM
9799]
gi|307632598|gb|ADN76900.1| DNA methylase N-4/N-6 domain protein [Ferrimonas balearica DSM
9799]
Length = 242
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/262 (19%), Positives = 79/262 (30%), Gaps = 39/262 (14%)
Query: 31 VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
L+ L SVDL+ + P G + +V + W + Y
Sbjct: 14 WLKSLGRHSVDLVVTELP--TPRRGPAIATELKNARSVRNQWFAIFPNDPY----PGLFE 67
Query: 91 ACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
RVLKPN ++ +F + + + F +VW + GR ++N
Sbjct: 68 QLYRVLKPNSHFYLFCRQEALFVVKPLAEAAGFRFQTVLVWDQQRK---KTGRNYRNQLG 124
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ +A D L A E+ KP
Sbjct: 125 WICLFEKGQRAVADPSQSDLLSYALENQH----------------------------KPH 156
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
ALL+ ++ S+ PG +++DPF A R F G + +A R
Sbjct: 157 ALLALLMAQSSAPGQLVIDPFCLDAQIAQSALTEGRRFCGACAD-EAQHLAL-RTQLRAL 214
Query: 271 LGNIELTVLTGKRTEPRVAFNL 292
EL P A
Sbjct: 215 PDITELLTRPASTPLPGWAQGS 236
>gi|311766116|emb|CBW29403.1| unnamed protein product [Haemophilus influenzae 10810]
Length = 446
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 8/224 (3%)
Query: 47 PPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
P Y+L+ + + D + + L+ + K + I
Sbjct: 89 PLYDLRSEYDEHYSLYLKNDGTIGQLKELYDYRFPKDLKNTTALSLKEAFKKSNEFAEIV 148
Query: 107 SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ-NAHETLIWASPSPKAKGYT 165
H + + + + N R + + + + G T
Sbjct: 149 KTHLAKIVASDKVTGFDLSVELENSKWKEVERNGRKYILTLDKNGKVRQLLRLQDSWGKT 208
Query: 166 FNYDALKAANE--DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP 223
NY+ + + +L G E + K K E L+S+I+ ++T
Sbjct: 209 DNYNNDEGLRKIRGNWWEGFYLDMGNVGKEGSVDFKNGK-----KGERLISQIIKTATNE 263
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
DI+LD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 264 SDIVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 307
>gi|307250043|ref|ZP_07532007.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307252390|ref|ZP_07534286.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306857903|gb|EFM89995.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306859982|gb|EFM91999.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 153
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLN---GQLYRPDHSLVDAVTDS--W 72
+ I+G ++ VL+ L S+ +I+ DPPYN + + + + A T
Sbjct: 67 NIFIEGENLEVLKALQKSYFNSIKMIYIDPPYNTGNDFVYNDNFAQNQTDYQAQTGEIGE 126
Query: 73 DKF------SSFEAYDAFTRAWLLAC 92
D F + + F WL
Sbjct: 127 DGFLKKAFRKNAKENGHFHSNWLNMM 152
>gi|206889392|ref|YP_002248227.1| DNA methyltransferase C1 [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741330|gb|ACI20387.1| DNA methyltransferase C1 [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 475
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/216 (16%), Positives = 69/216 (31%), Gaps = 22/216 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDHSLVD 66
K+I G++ ++ + S+DLI PPY L ++ L+R H +
Sbjct: 251 KVICGDARNL--SIENNSIDLIITSPPYVNALDYYRVHMYNMLWLGMDFDLFR-KHEIGG 307
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
++F Y ++ RVLK + VI ++ + + F +
Sbjct: 308 HSHFINNRFRLLSEYLGDMLRSMIEMNRVLKRD-KFCVIVVGNSSLEYELIESHKFFTEM 366
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLI 186
+ + + I + AN+D +
Sbjct: 367 AKKIGFIPIKTIFRNIDKTRKYTSADIGKIDEEYIVVMQKKEETHIFANDDNFVSQIVKE 426
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK 222
+ E+++N G +KP R+L + K
Sbjct: 427 LMLHFKEQIKNNPGTSTR-GKKPS--NERLLKNIDK 459
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+P + + + TK + +LDP G GT+ A R+ IG ++ IA
Sbjct: 66 YPARFIPQIPLTFIKLFTKERERVLDPMCGCGTTLVEAFLNDRNSIGNDLNPLAALIAKV 125
Query: 264 RIASVQPLGNIELTVLTGK 282
+ ++ L K
Sbjct: 126 KTTLIKKDEFKYLNEKLIK 144
>gi|53729200|ref|ZP_00134051.2| COG2189: Adenine specific DNA methylase Mod [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 992
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 24/208 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+NE + + +I ++ L L + V I+ DPPYN + ++ +
Sbjct: 417 VLNELHDLDEKTNGLLIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNAS-EIIYKNGYK 475
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
++++ + R++L G Y +F G +L
Sbjct: 476 -------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKILDEEFGE 522
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANED 177
IV NP R F + E +I +PSP + + +ED
Sbjct: 523 LSRVGIVSILINPKGRQHERFFSASSEYMIVYTPSPNSARFNQTTIDAEKRKTFNLFDED 582
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ R S LR + + +P
Sbjct: 583 KKERYRLDEFARIRSSTLRKEKPKFFYP 610
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
P +G+ L+ G + K + + ++K D ILD F GSGT+
Sbjct: 684 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 743
Query: 240 VAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
R +I +E +Y D ++P + K +P+
Sbjct: 744 AVINLNREDGGNRKYILVEQG-EYFDT------VLKPRVQKVIFAKEWKDGKPQADNGAF 796
>gi|213859598|ref|ZP_03385302.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
M223]
Length = 340
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 27 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 85
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 86 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 136
>gi|213584315|ref|ZP_03366141.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-0664]
Length = 321
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 8 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 66
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 67 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 117
>gi|309792609|ref|ZP_07687070.1| putative RNA methylase [Oscillochloris trichoides DG6]
gi|308225331|gb|EFO79098.1| putative RNA methylase [Oscillochloris trichoides DG6]
Length = 283
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+LHP+ KP L++ ++ TK G +LDPF G G + RS IG+++ + Y
Sbjct: 51 RRLHPSPKPPQLMAELVRFFTKRGGHVLDPFAGVGGTLIACSLEGRSAIGVDLSEVY 107
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 18/141 (12%)
Query: 24 IKGNS--ISVLEKLPAKSVDLIFADPPYNLQL----NGQLYRPDHSLVDAVTDSWDKFSS 77
I G+S + + A+ DLI DPPY L G+ + TDS D +
Sbjct: 126 IIGDSRHLQRYPAITAQRFDLILTDPPYAQMLAKPKTGERKKRGQGAATPFTDSADDLGN 185
Query: 78 --FEAYDAFTRAWLLACRRVLKPNGTLWVI-------GSYHNIFR---IGTMLQNLNFWI 125
+ + + R +L+P G L + +HN+ + +
Sbjct: 186 LGYWEFLSALRDLFANTIPLLRPGGHLVLFTKDLQPSPDHHNMLHADIVANLRDLPGLEY 245
Query: 126 LNDIVWRKSNPMPNFRGRRFQ 146
+W + G F
Sbjct: 246 RGYQIWHDQSQNFYPFGYPFT 266
>gi|156743960|ref|YP_001434089.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
gi|156235288|gb|ABU60071.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
Length = 483
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
P + P L + + + T PG+ +LDP GSGT+ A L R IG ++ +
Sbjct: 46 HNIHSFPAKFPPQLPRKFIQALTLPGETVLDPMMGSGTTVLEAFLLGRRGIGFDIDPLAV 105
Query: 259 DIATKRIASVQPLG 272
+A +++ +
Sbjct: 106 MLAKAKVSPISHHD 119
>gi|84683492|ref|ZP_01011395.1| DNA modification methylase [Maritimibacter alkaliphilus HTCC2654]
gi|84668235|gb|EAQ14702.1| DNA modification methylase [Rhodobacterales bacterium HTCC2654]
Length = 409
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 31/81 (38%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ +R + E + L + TKPG ++ DPF G GT+ A +
Sbjct: 46 NEFWTAGQRQAHSIHEVSYRACFKAQLPEFFIKRLTKPGGVVFDPFMGRGTTPVQAALMG 105
Query: 246 RSFIGIEMKQDYIDIATKRIA 266
R G ++ + + R+
Sbjct: 106 RQAFGNDINPLSVLLTRPRLR 126
>gi|144227622|gb|AAZ44509.2| putative type III restriction-modification system: methylase
[Mycoplasma hyopneumoniae J]
Length = 561
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 24/281 (8%)
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + V + D KFS D + + L W G + I
Sbjct: 251 KNIQHLTTNIYVQNINDGSYKFS-----DEYIQERGKYKLIQLDRASLTWSEGLDYPIEY 305
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA--HETLIWASPSPKAKGYTFNYDAL 171
G + + + + ++R R + K ++ Y +
Sbjct: 306 NGKIYYAGGSQEKWQARHQGNRAVKDWRWRWARKKLDWGIKNGFIVFKNEKVFSKQYQFV 365
Query: 172 KAANEDVQMRSDWLI-----PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
N+ ++ S + G++ +N K+ KP L+ ++
Sbjct: 366 DNNNQKIERVSKFSNLILLAQGTEGTQEQKNIFSTKVFDHPKPIELIKYLINIHPNKNAK 425
Query: 227 ILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDYI--DIATKRIASVQP--LGNIEL 276
ILD F GSGT+G +L R F + Q+ I +I +R+ + E
Sbjct: 426 ILDFFAGSGTTGHAVWELNRQDGGNRIFTLVTNNQNNIATNITYERLFRINHGFGTKKEQ 485
Query: 277 TVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
K+ +P + + N + +++ V
Sbjct: 486 NFDWIKKNQPYKTNLDVFRINYF--NTEILNKENDVNLLVK 524
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 26/208 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP----------------AKSVDLIF 44
+ + +L+ N+N+ + + +I G + L+ L A D+I+
Sbjct: 76 LEKDENLSFKSNENNQNQ--NTLIIGENYDALKNLLVLERERERERERERATAAGYDIIY 133
Query: 45 ADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
DPPYN Q G D + + S + L +++LK +G
Sbjct: 134 IDPPYNTQASFNEGNQIANDKENILPSKFIYRDKYSRNGWLNLLNERLNLAKKLLKDDGI 193
Query: 102 LWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
++V + + ++ + + ++VW+K N + + E ++ S +
Sbjct: 194 IFVSIDDNQHGYLKVLMDEIFGEENFVANLVWQKKNEGSAADSKFVKVLTEYVLAYSKNI 253
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ N+ SD I
Sbjct: 254 QHLTTNIYVQ---NINDGSYKFSDEYIQ 278
>gi|213025360|ref|ZP_03339807.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
404ty]
Length = 175
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L++ Y A + + D + G + + + G+ + T KP
Sbjct: 45 NLVYFGKDNGGIPQRVMY-AHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPT 103
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQ 255
ALL +I+ + ++LD F GSGT+ L R+FI + Q
Sbjct: 104 ALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQ 154
>gi|71893774|ref|YP_279220.1| putative type III restriction-modification system: methylase
[Mycoplasma hyopneumoniae J]
Length = 552
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 24/281 (8%)
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + V + D KFS D + + L W G + I
Sbjct: 242 KNIQHLTTNIYVQNINDGSYKFS-----DEYIQERGKYKLIQLDRASLTWSEGLDYPIEY 296
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA--HETLIWASPSPKAKGYTFNYDAL 171
G + + + + ++R R + K ++ Y +
Sbjct: 297 NGKIYYAGGSQEKWQARHQGNRAVKDWRWRWARKKLDWGIKNGFIVFKNEKVFSKQYQFV 356
Query: 172 KAANEDVQMRSDWLI-----PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
N+ ++ S + G++ +N K+ KP L+ ++
Sbjct: 357 DNNNQKIERVSKFSNLILLAQGTEGTQEQKNIFSTKVFDHPKPIELIKYLINIHPNKNAK 416
Query: 227 ILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDYI--DIATKRIASVQP--LGNIEL 276
ILD F GSGT+G +L R F + Q+ I +I +R+ + E
Sbjct: 417 ILDFFAGSGTTGHAVWELNRQDGGNRIFTLVTNNQNNIATNITYERLFRINHGFGTKKEQ 476
Query: 277 TVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVC 317
K+ +P + + N + +++ V
Sbjct: 477 NFDWIKKNQPYKTNLDVFRINYF--NTEILNKENDVNLLVK 515
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 26/208 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP----------------AKSVDLIF 44
+ + +L+ N+N+ + + +I G + L+ L A D+I+
Sbjct: 67 LEKDENLSFKSNENNQNQ--NTLIIGENYDALKNLLVLERERERERERERATAAGYDIIY 124
Query: 45 ADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
DPPYN Q G D + + S + L +++LK +G
Sbjct: 125 IDPPYNTQASFNEGNQIANDKENILPSKFIYRDKYSRNGWLNLLNERLNLAKKLLKDDGI 184
Query: 102 LWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
++V + + ++ + + ++VW+K N + + E ++ S +
Sbjct: 185 IFVSIDDNQHGYLKVLMDEIFGEENFVANLVWQKKNEGSAADSKFVKVLTEYVLAYSKNI 244
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIP 187
+ N+ SD I
Sbjct: 245 QHLTTNIYVQ---NINDGSYKFSDEYIQ 269
>gi|307256727|ref|ZP_07538506.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864775|gb|EFM96679.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 962
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 24/208 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+NE + + +I ++ L L + V I+ DPPYN + ++ +
Sbjct: 387 VLNELHDLDEKTNGLLIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNAS-EIIYKNGYK 445
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
++++ + R++L G Y +F G +L
Sbjct: 446 -------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKILDEEFGE 492
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANED 177
IV NP R F + E +I +PSP + + +ED
Sbjct: 493 LSRVGIVSILINPKGRQHERFFSASSEYMIVYTPSPNSARFNQTTIDAEKRKTFNLFDED 552
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ R S LR + + +P
Sbjct: 553 KKERYRLDEFARIRSSTLRKEKPKFFYP 580
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
P +G+ L+ G + K + + ++K D ILD F GSGT+
Sbjct: 654 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 713
Query: 240 VAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
R +I +E +Y D ++P + K +P+
Sbjct: 714 AVINLNREDGGNRKYILVEQG-EYFDT------VLKPRVQKVIFAKEWKDGKPQADNGAF 766
>gi|167565740|ref|ZP_02358656.1| site-specific DNA methyltransferase [Burkholderia oklahomensis
EO147]
Length = 142
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K H T+KP + ++ G ++ D F GSGT A A++ +IG E Y IA
Sbjct: 69 KQHVTEKPLDVAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGLHWIGCETNATYYAIA 127
Query: 262 TKRI 265
R+
Sbjct: 128 MHRL 131
>gi|237716188|ref|ZP_04546669.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
D1]
gi|262407797|ref|ZP_06084345.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
2_1_22]
gi|294644813|ref|ZP_06722556.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
gi|229443835|gb|EEO49626.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
D1]
gi|262354605|gb|EEZ03697.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
2_1_22]
gi|292639846|gb|EFF58121.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
Length = 839
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 18/172 (10%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
W + K +G + + I + + I + +
Sbjct: 661 WQIDAHASWKSSGNTLLSYEDMKVAGIDKIRHLFRNYEREHIYNYEEHVAFA-------- 712
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
E L PK +DV + H
Sbjct: 713 --EELEVYGKLPKTFMAVDPVSKKPWIWDDVTRMRTLNTKQSQKK--------RQNHICP 762
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
++ R++ + GD++ DPF G GT A +L R + E+ DY
Sbjct: 763 LQLDIVERLIERYSNKGDLVFDPFGGIGTVPYCAIRLGRKGLSTELNYDYWK 814
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I +++ +K+ + SVDL+ P++ D +S DKF Y
Sbjct: 483 INNDNVLECQKMESNSVDLVVTSIPFSNHYEYTPTYNDF----GHNESNDKFFEQMDYLT 538
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYH 109
R+LKP +
Sbjct: 539 P------ELMRILKPGRLACIHVKDR 558
>gi|162455583|ref|YP_001617950.1| hypothetical protein sce7301 [Sorangium cellulosum 'So ce 56']
gi|161166165|emb|CAN97470.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
cellulosum 'So ce 56']
Length = 433
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G +P + R++ ++PG+ +LDPF GSGT A+ R+ IG++ +
Sbjct: 73 HGFHSYPARMHPDTARRLIEGLSRPGERVLDPFCGSGTVLVEARLAGRAAIGVDANPLAV 132
Query: 259 DIATKRIASVQPLGNIEL 276
+A ++ P L
Sbjct: 133 RLARLKVQGSTPGERERL 150
>gi|126208185|ref|YP_001053410.1| putative methylation subunit, type III restriction-modification
system [Actinobacillus pleuropneumoniae L20]
gi|126096977|gb|ABN73805.1| putative methylation subunit, type III restriction-modification
system [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
Length = 962
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 24/208 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+NE + + +I ++ L L + V I+ DPPYN + ++ +
Sbjct: 387 VLNELHDLDEKTNGLLIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNAS-EIIYKNGYK 445
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
++++ + R++L G Y +F G +L
Sbjct: 446 -------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKILDEEFGE 492
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANED 177
IV NP R F + E +I +PSP + + +ED
Sbjct: 493 LSRVGIVSILINPKGRQHERFFSASSEYMIVYTPSPNSARFNQTTIDAEKRKTFNLFDED 552
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ R S LR + + +P
Sbjct: 553 KKERYRLDEFARIRSSTLRKEKPKFFYP 580
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
P +G+ L+ G + K + + ++K D ILD F GSGT+
Sbjct: 654 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 713
Query: 240 VAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
R +I +E +Y D ++P + K +P+
Sbjct: 714 AVINLNREDGGNRKYILVEQG-EYFDT------VLKPRVQKVIFAKEWKDGKPQADNGAF 766
>gi|165976122|ref|YP_001651715.1| methylation subunit, type III restriction-modification system
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|165876223|gb|ABY69271.1| probable methylation subunit, type III restriction-modification
system [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 962
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 24/208 (11%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
+NE + + +I ++ L L + V I+ DPPYN + ++ +
Sbjct: 387 VLNELHDLDEKTNGLLIHSDNFQALNLLQEKYKEQVKCIYIDPPYNTNAS-EIIYKNGYK 445
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNF 123
++++ + R++L G Y +F G +L
Sbjct: 446 -------------HSSWNSLIENRVSLSRKLLSNEGFFAGTIDYAELFSFGKILDEEFGE 492
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF------NYDALKAANED 177
IV NP R F + E +I +PSP + + +ED
Sbjct: 493 LSRVGIVSILINPKGRQHERFFSASSEYMIVYTPSPNSARFNQTTIDAEKRKTFNLFDED 552
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ R S LR + + +P
Sbjct: 553 KKERYRLDEFARIRSSTLRKEKPKFFYP 580
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
P +G+ L+ G + K + + ++K D ILD F GSGT+
Sbjct: 654 WIDKKYYPEFNGTNLLKGILGNSIFSYPKSIYAVQDYIKITSKKDDYILDYFAGSGTTAH 713
Query: 240 VAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
R +I +E +Y D ++P + K +P+
Sbjct: 714 AVINLNREDGGNRKYILVEQG-EYFDT------VLKPRVQKVIFAKEWKDGKPQADNGAF 766
>gi|313898471|ref|ZP_07832008.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
gi|312956853|gb|EFR38484.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. HGF2]
Length = 956
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 80/252 (31%), Gaps = 9/252 (3%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + + L ++ L++ADPPY R H L + + +
Sbjct: 276 DCLDSV-SLNNET--LVYADPPYF---KEHYSRYYHVLNTVCLYDYPAMAMNPQTHELSI 329
Query: 87 AWLLACRRVLKPNGTLWVIGSYHN-IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
R V +G++ I + L ++ + S+ R
Sbjct: 330 GRYREDRSVSDFGKKAKALGAFDTLITKCSNAGAWLMISYSDNSIVDISDIQALAEKRYD 389
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
+ + S ++ + +++ D + + + + + +H
Sbjct: 390 VLIEKVELSHSKQGRSSISKVDEYIFICRPKEIVHDVDEKLSVIKELKPIVDNPAGFMHN 449
Query: 206 TQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
KP ++S I+ G + DP FGSGT+ A KL R IG ++ +
Sbjct: 450 YMARKPYNVVSEIIKRFCPDGGCVYDPMFGSGTTIIEASKLGRKAIGTDINLLAYKLCKA 509
Query: 264 RIASVQPLGNIE 275
+ E
Sbjct: 510 SLTRWNLSKVEE 521
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 14/131 (10%)
Query: 32 LEKLPAKSVDLIFADPPY------------NLQLNGQLYRPDHSLVDA--VTDSWDKFSS 77
L+ LP ++VDLI DPPY ++ G D SL V+D+ +
Sbjct: 731 LDLLPNEAVDLILTDPPYTDQVPYLEYNQLWYKVMGWSGFTDESLGSELVVSDAPSRNKD 790
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E ++ A L LK NG + ++ +L+ + + L S
Sbjct: 791 AEDFNNIFAAILKRISPALKMNGYFIMFYHSFDLKSWSEILKMMQEYGLAYCGQIPSAAP 850
Query: 138 PNFRGRRFQNA 148
Sbjct: 851 RKSFKAIMTPK 861
>gi|256617066|ref|ZP_05473912.1| predicted protein [Enterococcus faecalis ATCC 4200]
gi|257088371|ref|ZP_05582732.1| predicted protein [Enterococcus faecalis D6]
gi|256596593|gb|EEU15769.1| predicted protein [Enterococcus faecalis ATCC 4200]
gi|256996401|gb|EEU83703.1| predicted protein [Enterococcus faecalis D6]
Length = 970
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/285 (13%), Positives = 85/285 (29%), Gaps = 29/285 (10%)
Query: 22 KIIKGNSISVLEKLPAKS------VDLIFADPPY------------NLQLNGQLYRPDHS 63
K+ + + L S + LI+ADPPY N+ P S
Sbjct: 259 KVFNQD----MSALLKNSEFNQQRIKLIYADPPYTDMQYSRYYHLLNVAAKYDYPEPTIS 314
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRA--WLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQN 120
+ + + + A L NG + + +Y +
Sbjct: 315 RGKFTKGLYTEGRNQSDLSKKSTAKGRLEELFNYCHENGVVLALSYAYPKDESNQKTDRY 374
Query: 121 LNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQM 180
+ ++ + H +S + + + D+
Sbjct: 375 TVSIEELVDIAKRVFGNKRVQIELKDYQHANNRNSSAKEVFEYLILCGQEVHKSQYDLIE 434
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + + S+ L+ +QK ++ ++ + DI+ DPF GSG +
Sbjct: 435 LKNEIKSLTPTSKN--PVYNTHLYWSQKSFNVIDSLISHLSSENDIVFDPFMGSGVTVLE 492
Query: 241 AKK--LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
A + + R IG ++ + I + + + +L +
Sbjct: 493 AVQGNMNRIGIGCDVNEMSKFITSNILTDIPHSDLNQLFSNLENK 537
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW----------DKFSSFEAYDAF 84
+P SV LI DPPY Q+ Y + V + ++ + Y
Sbjct: 749 IPDDSVSLIITDPPYMDQVLYSEYMQLYKPFIGVGFNLHDEIIVSSAPERNKGKDEYFTL 808
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIF---RIGTMLQNLNFWILNDIVWRKSNPMPN 139
C+R LK N + + N+ ++ +L++ F ++ +KS + N
Sbjct: 809 LYEVFEMCKRKLKENNIMCLFFHDSNLDVWVKLLQILESNGFKFISQEHIKKSKTVKN 866
>gi|312966021|ref|ZP_07780247.1| DNA methylase family protein [Escherichia coli 2362-75]
gi|312289264|gb|EFR17158.1| DNA methylase family protein [Escherichia coli 2362-75]
Length = 1039
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 18/160 (11%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLV 65
+ E N +I ++ + L S+D ++ DPPYN + LY+ ++
Sbjct: 466 LTELTNVDDNLDGLLINSDNYQAINFLEGRYKDSIDCLYIDPPYNTAASEILYKNEYK-- 523
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFW 124
++++ + +LK + + + ++ +G +
Sbjct: 524 ------------HSSWNSLMYERISKSYNLLKISAINFTAIDHAELYNLGKIKDEIYGEQ 571
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+V + NP + + F E ++ + A +
Sbjct: 572 NRIAVVTVQHNPKGRNQAKFFSENTEYMLVYAKDFNAANF 611
Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 9/128 (7%)
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
N + + + K Y + N +G+ L+N G+ L
Sbjct: 699 NKDNYFKAVNENGEIKIYHKYREQQVFKN---LWIDKKYQSEFNGTNLLKNILGQSLFDY 755
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDI 260
K + + ST I+LD F GSGT+ L FI +EM + +
Sbjct: 756 PKSLYAVQDAIKMSTPHNGIVLDYFAGSGTTSHAVINLNNSDNLCMKFINVEMGTHFNTV 815
Query: 261 ATKRIASV 268
R+ +
Sbjct: 816 VIPRLKKI 823
>gi|78356789|ref|YP_388238.1| type III restriction system methylase [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219194|gb|ABB38543.1| type III restriction system methylase [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 173
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG---QLYRPDHSLVDAVTDSWDK 74
+ I+G+++ VL+ L + +I+ DPPYN + + T +
Sbjct: 92 NLFIEGDNLEVLKILQKSYAGKIKVIYIDPPYNTGKEFIYPDKFHDNLDTYLRYTGQKGE 151
Query: 75 -----FSSFEAYDAFTRAWLL 90
S+ E+ F WL
Sbjct: 152 DGLVVSSNNESSGRFHTNWLS 172
>gi|163846442|ref|YP_001634486.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
gi|222524216|ref|YP_002568687.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
gi|163667731|gb|ABY34097.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
gi|222448095|gb|ACM52361.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
Length = 280
Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ HP+ KP L++ ++ T+ +LDPF G G + + R+ +GI++ +Y I
Sbjct: 44 RRQHPSPKPPQLMAELIRFFTRQHGHVLDPFAGVGGTLIASSLEGRTAVGIDLSAEYATI 103
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 15/137 (10%)
Query: 22 KIIKGN--SISVLEKLPAKSVDLIFADPPYN-------LQLNGQLYRPDHSLVDAVTDSW 72
+ G+ ++ L ++ + DLI DPPY + RP+ +
Sbjct: 117 TYVVGDARNLLELPEVRERPFDLILTDPPYAAMMARPKTGERRKRGRPNPTPFTTSAADL 176
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ + L A +VL+P G L + + ++ N + ++
Sbjct: 177 GNL-PYHEFIGELCTILTAALQVLRPGGYLVIFAKD-----LQPTPEHHNMLHADLVIAL 230
Query: 133 KSNPMPNFRGRRFQNAH 149
+ P +RG R +
Sbjct: 231 RQVPGLEYRGYRIWHDQ 247
>gi|300215356|gb|ADJ79769.1| Adenine specific DNA methylase Mod [Lactobacillus salivarius CECT
5713]
Length = 417
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KPEA++ + + T D++LD F GS T+ AVA K+RR FIGIE IA R+
Sbjct: 233 KKPEAIIKKYIDIFTDEEDLVLDFFMGSATTQAVAMKMRRHFIGIEQMDYINTIAVPRLQ 292
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
V ++ + V L++ Q
Sbjct: 293 KVIEGEQGGIS-----KDVNWQGGGSFVYAELMEKNQ 324
>gi|207109035|ref|ZP_03243197.1| adenine specific DNA methyltransferase (hpaim) [Helicobacter pylori
HPKX_438_CA4C1]
Length = 139
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ G+ +SVLE DL PPYNL + Q D F +++ Y
Sbjct: 12 LYHGD-VSVLETFEKGFYDLCITSPPYNLSIEYQGS--------------DDFRAYDDYL 56
Query: 83 AFTRAWLLACRRVLKPNGTLWV 104
+ + WL C K L +
Sbjct: 57 NWCKNWLKNCYFWGKEQARLCL 78
>gi|284097271|ref|ZP_06385414.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
gi|283831218|gb|EFC35185.1| DNA modification methylase [Candidatus Poribacteria sp. WGA-A3]
Length = 109
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
G+ + VL S DLI PPY + + + Y
Sbjct: 8 FYLGDCLKVLADFDTDSFDLIITSPPYADRRSKTYG----------------GIHPDQYV 51
Query: 83 AFTRAWLLACRRVLKPNGTLWV 104
+ RVLKP+GT +
Sbjct: 52 DWFMPRAAEFLRVLKPSGTFVL 73
>gi|159896647|ref|YP_001542894.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159889686|gb|ABX02766.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
ATCC 23779]
Length = 353
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
AH + + S T D N + + R DG +H
Sbjct: 75 RAHYYIERLARSIATVRTTAIND--INLNRWKEYDDINTDSLWMIDRR----DGSGVHSA 128
Query: 207 --------QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
Q P L+ R TK GD ++D F GSGT+ A++L R+ +G+E++ +
Sbjct: 129 GYWGNFVPQIPNQLMRR----YTKQGDWVIDTFAGSGTTLIEAQRLGRNVLGVELQPHMV 184
Query: 259 DIATKRIASV 268
+ A + +
Sbjct: 185 EYANQAVERE 194
>gi|296445816|ref|ZP_06887768.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
OB3b]
gi|296256644|gb|EFH03719.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
OB3b]
Length = 411
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 6/114 (5%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ ++R + E + L + T PGD + DPF G GT+ A
Sbjct: 50 NEFWTSAQRQAHSIHEISYRACFKPQLPEFFISRLTAPGDAVFDPFMGRGTTPVQAALQG 109
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
R +G ++ + + R++ L + + +E + L+
Sbjct: 110 RRPVGSDINPLSVLLTRPRLS------PPSLPEIERRLSEIAREEGEIEREDLL 157
>gi|290559536|gb|EFD92865.1| Methyltransferase type 11 [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 297
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ +++ T P DI+LDP GSGT+ K L R+ IG+++ ++ I IA R+
Sbjct: 73 PQIPRNLILEYTNPEDIVLDPMNGSGTTLIECKLLGRNGIGVDINEEAIMIALDRLNFQA 132
Query: 270 PLGNIE 275
Sbjct: 133 HELPSS 138
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 22/166 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K G++ + L + ++DLI PPY ++ R V SS +
Sbjct: 141 KTFVGDARN-LNLIKDNAIDLILTHPPYVNIISYTYNR--------VEGDLSSISSVSEF 191
Query: 82 DAFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILN------------D 128
+ RV+KP ++G + L
Sbjct: 192 IEEINKLAVEFFRVIKPGKYCAILMGDTRRHSHYIPVTFRTMQAFLEAGFALKEDIIKLQ 251
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ + + ++ AHE L + + +++K
Sbjct: 252 WNMQSTRQNWAGKQNFYKIAHEHLFVFRKPTHDERLSELKESIKWW 297
>gi|153875886|ref|ZP_02003483.1| hypothetical protein BGP_0876 [Beggiatoa sp. PS]
gi|152067647|gb|EDN66514.1| hypothetical protein BGP_0876 [Beggiatoa sp. PS]
Length = 70
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
G+ + +L+ + S+DL++ DPP+ + +L D + + D W +
Sbjct: 10 GDCLELLKPISDASIDLVYLDPPFFTETVQRLKTRDRTQEFSYQDIWGCQKNI 62
>gi|224457795|ref|ZP_03666268.1| adenine specific DNA methylase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254371242|ref|ZP_04987244.1| predicted protein [Francisella tularensis subsp. tularensis FSC033]
gi|254875471|ref|ZP_05248181.1| predicted protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|151569482|gb|EDN35136.1| predicted protein [Francisella tularensis subsp. tularensis FSC033]
gi|254841470|gb|EET19906.1| predicted protein [Francisella tularensis subsp. tularensis
MA00-2987]
Length = 186
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRP 60
K A E + +I+G++I L+ L A + +I+ DPPYN + +Y
Sbjct: 87 KELKAELEQSKDFDNTGNVVIRGDNIDTLKILRANYTNKIKMIYIDPPYNTKSENFIYND 146
Query: 61 DHSLVDA 67
+ +
Sbjct: 147 NFKKNEE 153
>gi|270708934|ref|ZP_06223129.1| Type III restriction-modification system EcoPI enzyme mod
[Haemophilus influenzae HK1212]
gi|270315731|gb|EFA27877.1| Type III restriction-modification system EcoPI enzyme mod
[Haemophilus influenzae HK1212]
Length = 122
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFADPPYN 50
+ ++ +I+G+++ VL+ L + +I+ DPPYN
Sbjct: 80 NQKPENQNSENILIQGDNLEVLKHLKHAYKNQIKMIYIDPPYN 122
>gi|124262817|ref|YP_001023287.1| hypothetical protein Mpe_B0277 [Methylibium petroleiphilum PM1]
gi|124262063|gb|ABM97052.1| hypothetical protein Mpe_B0277 [Methylibium petroleiphilum PM1]
Length = 413
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWL-IPICSGSERLRN---KDGEKLHPTQKPEA 211
+ + Y + ++ + C+ ER R + +H P
Sbjct: 284 AKTNGDGAYRLYPGSFGRETAGRIPKNVRILPHRCADKERARKLAIEQSLPVHGATMPLK 343
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
L + T+ G +++DP G GT+ A+ R ++ E +Y+ A+ R
Sbjct: 344 LAQFYIEYLTEQGQLVVDPCAGWGTTARAAEMAGRRWLTTEQMGEYVLGASNRF 397
>gi|167851504|ref|ZP_02477012.1| putative RNA methylase [Burkholderia pseudomallei B7210]
Length = 398
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+P + + +++ + GD ILDPF GSGT A K+ R IG+++ ++T
Sbjct: 10 YPAKFHAPVARQLISQFSNEGDTILDPFCGSGTLLLEAIKMGRDCIGVDIDPVAAFVSTA 69
Query: 264 RIASVQPLG 272
+ A
Sbjct: 70 KCAKWNVRE 78
>gi|78356786|ref|YP_388235.1| adenine specific DNA methylase Mod-like [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78219191|gb|ABB38540.1| Adenine specific DNA methylase Mod-like protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 445
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
D G + + N G+ + T KP ALL R++ +K DIILD F GS +
Sbjct: 181 YWDNSPTNKEGKKEVLNIFGDNVFDTPKPTALLQRLIALVSKEEDIILDFFSGSCATAHA 240
Query: 241 AKKLR------RSFIGIEM 253
K R FI +++
Sbjct: 241 VMKGNVYEKTKRKFIMVQL 259
>gi|149193953|ref|ZP_01871051.1| Adenine-specific DNA methylase [Caminibacter mediatlanticus TB-2]
gi|149135906|gb|EDM24384.1| Adenine-specific DNA methylase [Caminibacter mediatlanticus TB-2]
Length = 753
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 18/120 (15%)
Query: 7 LAINENQNSIFEWKD-KIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDH 62
+ + E ++I + D K+IK + L L S+DLI+ DPPYN + +Y +
Sbjct: 283 INLLEKIDNIEDELDGKLIKSENFQALNTLLPKCKNSIDLIYIDPPYNAPSSEIVYLNNF 342
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ + + LK +G + ++ +L ++
Sbjct: 343 K--------------HSTWLTMMENRISLSKSFLKKDGIFECAIDDNERDKLNNLLVSIY 388
Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
K+ E K LL + ++LD F GSGT+ +L R F+ I
Sbjct: 556 KNMELEFDFPKSPFLLYDLFSLIKNEKFVVLDFFAGSGTTADAVIRLNKDDGGSRKFLLI 615
Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
EM + + ++ R+ + N R + F
Sbjct: 616 EMGEHFYNVILPRLKKLCVSLN-YKEGYPKDRDGNSLFFKYYE 657
>gi|2128725|pir||H64450 hypothetical protein MJ1209 - Methanococcus jannaschii
Length = 200
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + ++V LP +S+DLI PPYN+ ++ + D +E Y
Sbjct: 22 TLINDDFLNV--DLPNESIDLIVTSPPYNVGIDYNQH--------------DDTIPYEEY 65
Query: 82 DAFTRAWLLACRRVLKPNGTLWV 104
+T+ WL +LK +G L +
Sbjct: 66 LDWTKQWLKKALTLLKKDGRLCL 88
>gi|325678020|ref|ZP_08157659.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
gi|324110300|gb|EGC04477.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
Length = 179
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+LH +KP L+ ++L T G+++LD F GSG G K RR + IE +++I
Sbjct: 102 RLHQAEKPVGLVEQLLEYLTFEGEMVLDQFAGSGVVGEACIKKRRGCVLIEKSKEFISKI 161
Query: 262 TKRIASV 268
KR+
Sbjct: 162 IKRLELF 168
>gi|315453689|ref|YP_004073959.1| Modification methylase BamHI [Helicobacter felis ATCC 49179]
gi|315132741|emb|CBY83369.1| Modification methylase BamHI [Helicobacter felis ATCC 49179]
Length = 107
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
ST+ G+++LDPF G+GT+ AK+L+R FIG E Y I+T+++
Sbjct: 1 MSTEEGEVVLDPFLGTGTTALAAKRLQRHFIGFEKDAQYCQISTEKLKLEN 51
>gi|304317320|ref|YP_003852465.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778822|gb|ADL69381.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 266
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + + I++ +K DI+LDP GSGT+ AK L R
Sbjct: 14 WSFPERGDWATHNGKYRGNFAPQVPRNIILRYSKENDIVLDPMVGSGTTLVEAKLLNRRG 73
Query: 249 IGIEMKQDYIDIATKRIAS 267
IG ++ D IDI + +
Sbjct: 74 IGFDINPDAIDITKRNLNF 92
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 21/172 (12%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+ I L+++ S+DLI PPY ++ + D S + V + +
Sbjct: 109 GD-IRNLKEIDDNSIDLIITHPPYLNIIKYSNGNIEGDLSNISGV----------KKFLN 157
Query: 84 FTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ RVLK N +IG + + L + K + +
Sbjct: 158 ELEKGVSELFRVLKNNRYCAILIGDTRKSGHYVPLAFYVMQLFLKNGFILKEDII----- 212
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMRSDWLIPICSGS 192
+ N T W S K Y ++ L + + S G+
Sbjct: 213 KVQHNCKSTPYWESQVEKYNFYLIMHEHLFVFRKPDIDEDVSKVRYSTWQGN 264
>gi|298575372|ref|YP_003727984.1| type II R/M system modification methylase [Methanocaldococcus
jannaschii DSM 2661]
gi|11386929|sp|Q58606|MTM6_METJA RecName: Full=Modification methylase MjaVI; Short=M.MjaVI; AltName:
Full=N-4 cytosine-specific methyltransferase MjaVI
gi|2826377|gb|AAB99220.1| modification methylase, type II R/M system [Methanocaldococcus
jannaschii DSM 2661]
Length = 194
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+I + ++V LP +S+DLI PPYN+ ++ + D +E Y
Sbjct: 16 TLINDDFLNV--DLPNESIDLIVTSPPYNVGIDYNQH--------------DDTIPYEEY 59
Query: 82 DAFTRAWLLACRRVLKPNGTLWV 104
+T+ WL +LK +G L +
Sbjct: 60 LDWTKQWLKKALTLLKKDGRLCL 82
>gi|330947324|gb|EGH48010.1| DNA methylase [Pseudomonas syringae pv. pisi str. 1704B]
Length = 71
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
+ G+ + V+ LPA SV ++ DPPY ++ G+ +
Sbjct: 5 LHLGDCLYVMRSLPANSVHIVVTDPPYGIRFMGKSW 40
>gi|154492435|ref|ZP_02032061.1| hypothetical protein PARMER_02069 [Parabacteroides merdae ATCC
43184]
gi|154087660|gb|EDN86705.1| hypothetical protein PARMER_02069 [Parabacteroides merdae ATCC
43184]
Length = 835
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+D + + + + + H ++ R++ + G+++ DPF G
Sbjct: 730 KKDWIWDDVARMRTLNTKQSQKKRQN---HICPLQLDIVERLIERYSNKGELVFDPFGGI 786
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYID 259
GT A KL R + E+ DY
Sbjct: 787 GTVPYCAIKLGRRGLSTELNYDYWK 811
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I +++ +K+ + SVDLI P++ D + DKF Y
Sbjct: 480 INNDNVLECQKMESNSVDLIVTSIPFSNHYEYTPTYNDF----GHNEDNDKFFEQMDYLT 535
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYH 109
R+LKP +
Sbjct: 536 P------ELMRILKPGRLACIHVKDR 555
>gi|332289361|ref|YP_004420213.1| putative DNA methylase [Gallibacterium anatis UMN179]
gi|330432257|gb|AEC17316.1| putative DNA methylase [Gallibacterium anatis UMN179]
Length = 149
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDH 62
+ I+G ++ VL+ L SV +I+ DPPYN D+
Sbjct: 68 NVFIEGENLEVLKILQKSYFNSVKMIYIDPPYNT-TGNDFIYKDN 111
>gi|197294754|ref|YP_001799295.1| Putative methylase [Candidatus Phytoplasma australiense]
gi|171854081|emb|CAM12056.1| Putative methylase [Candidatus Phytoplasma australiense]
Length = 191
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 203 LHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+HPTQKP+ L ++++ S+ +L PF GSG+ VAKK ++IGIE+ DY+ +
Sbjct: 124 IHPTQKPQMLTNKLIDSAIMENQKGNVLIPFAGSGSECLVAKKKNLNYIGIEINPDYVML 183
Query: 261 ATKRIASV 268
+ + +
Sbjct: 184 INEALKKI 191
>gi|294807617|ref|ZP_06766410.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
CC 1b]
gi|294445053|gb|EFG13727.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
CC 1b]
Length = 394
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 18/172 (10%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
W + K +G + + I + + I + +
Sbjct: 216 WQIDAHASWKSSGNTLLSYEDMKVAGIDKIRHLFRNYEREHIYNYEEHVAFA-------- 267
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
E L PK +DV + H
Sbjct: 268 --EELEVYGKLPKTFMAVDPVSKKPWIWDDVTRMRTLNTKQSQKK--------RQNHICP 317
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
++ R++ + GD++ DPF G GT A +L R + E+ DY
Sbjct: 318 LQLDIVERLIERYSNKGDLVFDPFGGIGTVPYCAIRLGRKGLSTELNYDYWK 369
Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I +++ +K+ + SVDL+ P++ D +S DKF Y
Sbjct: 38 INNDNVLECQKMESNSVDLVVTSIPFSNHYEYTPTYNDF----GHNESNDKFFEQMDYLT 93
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYH 109
R+LKP +
Sbjct: 94 P------ELMRILKPGRLACIHVKDR 113
>gi|113474753|ref|YP_720814.1| hypothetical protein Tery_0950 [Trichodesmium erythraeum IMS101]
gi|110165801|gb|ABG50341.1| hypothetical protein Tery_0950 [Trichodesmium erythraeum IMS101]
Length = 501
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KP LS ++ S T DIILDPF GSG + +R FIGI++ +++A I
Sbjct: 42 KKPIECLSFLIESLTTENDIILDPFLGSGLVARESISRKRRFIGIDINPISVELAKMLID 101
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
L E+ + +P++ ++ G I
Sbjct: 102 LPSHLHLREILSSFEENIKPKIEATYTLDDGNI 134
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 20/156 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADP------PY-------NLQLNGQLYRPDHSLVDAVT 69
I++G++ VL + P + + LI ADP PY N + + P+ S ++
Sbjct: 325 IVEGDNRKVLSECPDEIISLIVADPPHSDRIPYLELSEMWNSLIGKK---PNFSDEIVIS 381
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGT--MLQNLNFWI 125
++ + + Y + R+LKP G L + + I+ +L +
Sbjct: 382 NAVIRGKDRKTYIKEMGIFFDNTARILKPGGILALFFNSKDREIWNFLNQIILSSTEINF 441
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
+ S+ R H+ ++ S K
Sbjct: 442 RGYFPMKYSSNSVLQNNRTGSLKHDFVLIYQKSGKR 477
>gi|320161782|ref|YP_004175007.1| putative DNA methyltransferase [Anaerolinea thermophila UNI-1]
gi|319995636|dbj|BAJ64407.1| putative DNA methyltransferase [Anaerolinea thermophila UNI-1]
Length = 997
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 45/171 (26%), Gaps = 18/171 (10%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
++ + L L + V ++ DPP+N + LY+ D +
Sbjct: 464 LLVHSENWQALNLLLEKYRERVKCVYIDPPFNTGKDDFLYK------DGYQ--------Y 509
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPM 137
++ + L + +G + S H I + +L + S
Sbjct: 510 ASWQSMMSDRLGLLINLFSESGVFFSSISDHEISSLKYLLDRVFGRVNFVGNIEWNSTKT 569
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
L++A ++ +D P
Sbjct: 570 VTNTALISVGHTHNLVYARQISYFTRNRHHFRLPDPLEGFENPDNDPRGPW 620
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAV 240
+ + G+ L+++ + KP +L+SRI+ T +LD F GSGT+G
Sbjct: 701 WNDVETTADGTRLLQDQFNSIVFTNPKPVSLISRIVQLGTHDINQTVLDFFAGSGTTGHA 760
Query: 241 AKKLR------RSFIGIEMKQDYIDIATKRIAS 267
L R FI +EM + + RI
Sbjct: 761 VINLNREDGRRRKFILVEMAHYFDTVLLPRIKK 793
>gi|282163636|ref|YP_003356021.1| putative DNA methylase [Methanocella paludicola SANAE]
gi|282155950|dbj|BAI61038.1| putative DNA methylase [Methanocella paludicola SANAE]
Length = 351
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 5/168 (2%)
Query: 103 WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN-----AHETLIWASP 157
V ++ N + D + ++ + N AH ++
Sbjct: 22 IVPCLDDKSNEKAKLMLNNIYNNYKDNIPKRFISQWDKVKLYDPNGNIDSAHAIILDIDQ 81
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
+ NY K + + E + HP ++ +
Sbjct: 82 GAYDIKNSLNYLTGKEWTKFTCSWFVFNALQKDLKEEQEICENCVDHPATYSPTMIEDFI 141
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ TK G ++DPF G G++ K+ R G E+ + Y DI KR+
Sbjct: 142 LFFTKEGMKVIDPFAGIGSTLVACKRTNRIGYGTELNKKYYDIILKRV 189
>gi|258514663|ref|YP_003190885.1| adenine-specific DNA methylase [Desulfotomaculum acetoxidans DSM
771]
gi|257778368|gb|ACV62262.1| adenine-specific DNA methylase [Desulfotomaculum acetoxidans DSM
771]
Length = 540
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+KP L++ + T PGD++LDPF GSG + A KL+R G+++ IAT I
Sbjct: 26 ARKPHNLVNAYIKHFTGPGDLVLDPFMGSGVTVIEALKLKRRVCGVDINPVAHFIATNTI 85
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVD-AVTDSWDKFSSFEAY 81
L +L SVD IF DPPY + L + + V+ + S E Y
Sbjct: 310 LPQLADNSVDYIFTDPPYGGSVPYLEMSALWAAWLGFSLNYREEIVVSKNETYNKSLENY 369
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
A + LK NG+ I ++ R L
Sbjct: 370 RQMLLAAFSEIYKKLK-NGSYMSITFHNKDLRTWRAL 405
>gi|256384078|gb|ACU78648.1| Type III restriction-modification system (MmyCI) adenine DNA
methyltransferase subunit [Mycoplasma mycoides subsp.
capri str. GM12]
Length = 564
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 21/173 (12%)
Query: 23 IIKGNSISVLEKLP-----------AKSVDLIFADPPYNLQL----NGQLYRPDHSLVDA 67
+I G + L+ L A + D+I+ DPPYN + L D
Sbjct: 91 LIIGENYDALKNLIVAEREREREQGAANFDVIYIDPPYNTESSLTDGNNLSEKDDVSNKK 150
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWIL 126
DKF S + L+ ++LK +G ++V + ++
Sbjct: 151 FI-YRDKF-SRTGWLNMLNERLIMAHQLLKDDGVIFVSIDDSEQAYLKVLMDEIFGEENF 208
Query: 127 NDIVWRKSNPMPNFR---GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ P + E ++ + + + + K +
Sbjct: 209 VANISWVKKKGPGGNTSLNYKIVKNTEYILVYAKEKEKTKFNYKIHNEKTLKD 261
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC-SGSERLRNKDGEK 202
+N + + + + + N + + +G E +++ +K
Sbjct: 341 CKKNKDNKWVAYRKQYQFVKFDPKNENIIFVNAGQEYENIIDDIFSSNGGEEIKSIFSDK 400
Query: 203 L-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQ 255
KP L+ ++ +LD + GSGT+G +L R F + +
Sbjct: 401 NKFDFPKPSDLIKYLINIHPNKNAKVLDFYAGSGTTGHAVLELNRQDNGNRTFTLVTNNE 460
Query: 256 DY--IDIATKRIASVQ--PLGNIELTVLTGKRTEPRVAF 290
+ ID+ +R+ + + + ++ EP ++
Sbjct: 461 NNIGIDVCYERLFRINNGKSTDNKTDFKWIEKNEPYLSN 499
>gi|168701821|ref|ZP_02734098.1| hypothetical protein GobsU_20013 [Gemmata obscuriglobus UQM 2246]
Length = 414
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G +P + +R++ + PG +LDPF GSGT + R+ G ++ +
Sbjct: 57 HGFHTYPARMHPITAARLVRAFAPPGGTVLDPFCGSGTVLVESLVAGRNARGTDLNPLAV 116
Query: 259 DIATKRIASVQPLGNIEL 276
+A + P L
Sbjct: 117 LLAQCKTRPRTPADIDRL 134
>gi|325528070|gb|EGD05282.1| adenine-specific DNA modification methyltransferase [Burkholderia
sp. TJI49]
Length = 867
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 196 RNKDGEKLHPT------QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+ + G H KP AL ++ + PGD++LDPF G+GT A ++ R
Sbjct: 514 KREWGGPAHSMCSYQGKMKP-ALAHHLVRCFSAPGDLVLDPFSGAGTIPFEACRMGRRGY 572
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
GI++ + + ++A P+ +L + + +ER
Sbjct: 573 GIDISRLGHVLTLAKVAKTSPVKMEDLLRDLEAFIKKYRLKSSEIER 619
>gi|207108804|ref|ZP_03242966.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
HPKX_438_CA4C1]
Length = 113
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
N D QMR W P + E+ K HPTQKP ALL R+L+ ++ +I DPF G
Sbjct: 7 INNDKQMRDVWNFPAIAPWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPFSG 61
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
S T+G A L+R FIGIE + +I I+ R
Sbjct: 62 SSTTGIAANLLKREFIGIEKESGFIKISMDR 92
>gi|145640732|ref|ZP_01796315.1| type III restriction-modification system methyltransferase-like
protein [Haemophilus influenzae R3021]
gi|145274658|gb|EDK14521.1| type III restriction-modification system methyltransferase-like
protein [Haemophilus influenzae 22.4-21]
Length = 194
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ RI+ +TK GDIILD GSGT+ AVA K+ R +IGIE +A +R+
Sbjct: 1 MRRIIDMTTKEGDIILDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKK 55
>gi|317123336|ref|YP_004097448.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
43043]
gi|315587424|gb|ADU46721.1| DNA methylase N-4/N-6 domain protein [Intrasporangium calvum DSM
43043]
Length = 225
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 193 ERLRNKDG--EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
ER DG E +H T E L + ++ ++PGD++LDPF G GT+ VA +L R +G
Sbjct: 20 ERAAGADGADEDVHFT---EHLATEVIERLSEPGDLVLDPFAGFGTTLLVADRLGRRGLG 76
Query: 251 IEMKQDYIDIATKRI 265
+E+ + +D+ R+
Sbjct: 77 VELLPERVDVVRARV 91
>gi|150401989|ref|YP_001329283.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
maripaludis C7]
gi|159906220|ref|YP_001549882.1| DNA methylase N-4/N-6 domain-containing protein [Methanococcus
maripaludis C6]
gi|150033019|gb|ABR65132.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C7]
gi|159887713|gb|ABX02650.1| DNA methylase N-4/N-6 domain protein [Methanococcus maripaludis C6]
Length = 1019
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 22/161 (13%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSL 64
++E N +I + L L + + + DPPYN +G +Y+ +
Sbjct: 467 LLSEIDNLEDNITGILINSENFQALNLLLEKYREKIKCCYIDPPYNKGYDGFIYKDNFK- 525
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM--LQNLN 122
++++ L + +++ NG++ + + + + N
Sbjct: 526 -------------HSSWNSLIYDRLALSKNLIRENGSISISIDDDEEHNLTALADMCLGN 572
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKG 163
L ++W +++ + F+ HE ++ S +
Sbjct: 573 ENRLAKLIWNRNHSA---QAGFFKLYHEYVLCYSKNRTQFN 610
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSF 248
L N G + T K L+ I+ ++LD F GSGT+G L R F
Sbjct: 749 LTNILGYSIDSTPKSIKLMEFIINYLADESSLVLDFFAGSGTTGHAVINLNKEDNGKRKF 808
Query: 249 IGIEMKQDYIDIATKRIAS 267
I +EM Q + + RI
Sbjct: 809 ILVEMGQYFDTVLKPRIQK 827
>gi|167721462|ref|ZP_02404698.1| DNA methylase [Burkholderia pseudomallei DM98]
Length = 160
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 24/174 (13%)
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+KP G L + + + ++Q + VW K+ R F E ++WA
Sbjct: 1 MKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRRGGFAQQAEFVVWA 60
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
S DV + + + K H T+KP +
Sbjct: 61 SRGAMRGC-------------DVYLPGVFPCRLPLP----------KQHVTEKPLDIARE 97
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++ G ++ D F GSGT A A++ ++G E Q Y I++ R+ +
Sbjct: 98 VVRLV-PAGGVVCDLFAGSGTFLAAAREAGLHWVGSESNQAYHAISSARLDATA 150
>gi|72384717|gb|AAZ67650.1| methyltransferase putative [Haemophilus parasuis 29755]
Length = 370
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I ++ L L A + V I+ DPPYN +G +Y+ +
Sbjct: 9 TLIHSDNFQALNLLQARYREQVKCIYIDPPYNTGGDGFIYKDGYQK-------------- 54
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
++ L + +L G ++ + + +
Sbjct: 55 SSWATLIHNRLSLAKPLLNQAGVIFQSIDDNEQANLKLL 93
>gi|294626876|ref|ZP_06705467.1| DNA methylase N-4/N-6 [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292598736|gb|EFF42882.1| DNA methylase N-4/N-6 [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 364
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ PE +++ L++ T+ GD + DPF G GT+ + R G+++ IA
Sbjct: 11 YFAMFPEEFVAKQLLAYTERGDTVFDPFCGRGTTVFESLLNGRHASGVDINPVAACIA 68
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 27 NSISVLEKLP--AKSVDLIFADPPY----------NLQLNGQLYRPDHSLVDAVTDSWDK 74
++ + P V LI PPY L+L L + L+ D D+
Sbjct: 212 DARKAEKAFPSLENKVKLIVTSPPYLDTTDYSEDQWLRLWF-LGGAERPLIKKNRD--DR 268
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPN 99
+S + Y F C ++K
Sbjct: 269 HTSADLYWKFLEEAWEGCANLVKKG 293
>gi|134098872|ref|YP_001104533.1| hypothetical protein SACE_2307 [Saccharopolyspora erythraea NRRL
2338]
gi|291005770|ref|ZP_06563743.1| hypothetical protein SeryN2_14718 [Saccharopolyspora erythraea NRRL
2338]
gi|133911495|emb|CAM01608.1| hypothetical protein SACE_2307 [Saccharopolyspora erythraea NRRL
2338]
Length = 323
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ R HP + A+ + T+PGD++LDP G GT+ A R +G+E
Sbjct: 32 KHRYTPDSTAHPAKMLPAIARHAITHYTQPGDLVLDPMCGIGTTLVEAIHTGRHALGVEY 91
Query: 254 KQDYIDIATKRIASVQPLGNIE 275
+ + IA IA G
Sbjct: 92 EPHWAHIARDNIALAHAAGIDH 113
>gi|217031872|ref|ZP_03437375.1| hypothetical protein HPB128_199g80 [Helicobacter pylori B128]
gi|216946524|gb|EEC25126.1| hypothetical protein HPB128_199g80 [Helicobacter pylori B128]
Length = 78
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+G++ + +K+ KP L+SR++ ST DIILD F GSGT+ +
Sbjct: 9 NGTKEVNALFNQKIFNNPKPTKLISRLIELSTNESDIILDFFAGSGTTAHAVLESN 64
>gi|206900883|ref|YP_002251611.1| putative DNA methylase [Dictyoglomus thermophilum H-6-12]
gi|206739986|gb|ACI19044.1| putative DNA methylase [Dictyoglomus thermophilum H-6-12]
Length = 311
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 23/170 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K G++ + L K+ S+DLI PPY ++ + + + E Y
Sbjct: 151 KTYWGDARN-LNKIEDNSIDLIATHPPYAGIISYTKNKKQSDDLSQL--------PLEEY 201
Query: 82 DAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNF------WILNDIVWRKS 134
RVLKP +IG + + +IL + + +
Sbjct: 202 LKEMEKVAEESFRVLKPGKVCAILIGDTRKHKYYVPIAYRVMQVFLEVGFILKEDIIKLQ 261
Query: 135 NPMPNFRGRRFQNA-------HETLIWASPSPKAKGYTFNYDALKAANED 177
M R R HE + K Y ++K +
Sbjct: 262 WNMKATRERWRAKEYEFYLIGHEHIFVFRKPEDEKEYKKYKFSIKWWKDG 311
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 38/87 (43%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + S +R + + + +++ T GD +LD GSGT+
Sbjct: 50 YTPEKTTVWSFPDRGSWATHKGNYRGNWSPYIPRNLILKYTAKGDWVLDQMMGSGTTLVE 109
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIAS 267
AK L R+ IG+++ D + +A R+
Sbjct: 110 AKLLERNAIGVDINLDAVMVALDRLNF 136
>gi|325965444|ref|YP_004243349.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323471531|gb|ADX75215.1| DNA modification methylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 611
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+PT+ P + +++S++P ++LDPF GSG +G A R + ++ + +A
Sbjct: 49 YPTKVPPGAIEPFILASSEPDSVVLDPFCGSGMTGLAALNTGRRALLSDLAPGAVHLAH- 107
Query: 264 RIASVQPLGNIELTVLTG 281
P+ +
Sbjct: 108 --NHSHPVPPTVIAAAMT 123
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 32 LEKLPAKSVDLIFADPPYNLQL-NGQLYRPDHSLVDAVTDSWDK------------FSSF 78
L LP+ S+D +F DPP+ L G S + VTD ++ S
Sbjct: 381 LSWLPSSSIDYVFTDPPFGANLFYGDCNVVWESWLGDVTDLTEEIVVNKSLPSTAGGKSL 440
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ Y+ RRVL P V+
Sbjct: 441 DDYEKLLSGAFSEVRRVLAPGARASVVF 468
>gi|217032844|ref|ZP_03438323.1| hypothetical protein HPB128_165g3 [Helicobacter pylori B128]
gi|298737009|ref|YP_003729539.1| DNA methyltransferase [Helicobacter pylori B8]
gi|216945427|gb|EEC24091.1| hypothetical protein HPB128_165g3 [Helicobacter pylori B128]
gi|298356203|emb|CBI67075.1| DNA methyltransferase [Helicobacter pylori B8]
Length = 141
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+PT+K LL I+ +S+ I+LD F GSGT+ A L+R FIGI+ I
Sbjct: 61 YPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSDLAIQACKN 120
Query: 264 RIASVQPL 271
++ ++
Sbjct: 121 KLETITKD 128
>gi|296448055|ref|ZP_06889959.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
OB3b]
gi|296254455|gb|EFH01578.1| DNA methylase N-4/N-6 domain protein [Methylosinus trichosporium
OB3b]
Length = 70
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+T PGD++LDP GSGTS VA++ R +I I+ + + +A R+ S +
Sbjct: 1 MTTDPGDLVLDPTCGSGTSAHVAEQWGRRWITIDTSRVALALARTRLMSAR 51
>gi|259909383|ref|YP_002649739.1| DNA methylase N-4/N-6, fragment [Erwinia pyrifoliae Ep1/96]
gi|224965005|emb|CAX56533.1| DNA methylase N-4/N-6, fragment [Erwinia pyrifoliae Ep1/96]
gi|283479454|emb|CAY75370.1| Type III restriction-modification system StyLTI enzyme mod
[Erwinia pyrifoliae DSM 12163]
Length = 90
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLY 58
+ II+G+++ L L A V IF DPPYN Q + Y
Sbjct: 37 NMIIQGDNLLALRALMPLYAGRVKCIFIDPPYNTQSAFEHY 77
>gi|332656343|ref|YP_004301644.1| methyltransferase [Tetragenococcus muriaticus]
gi|326324686|dbj|BAJ84511.1| methyltransferase [Tetragenococcus muriaticus]
Length = 197
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 1 MSQKNSLAINENQNSI--FEWKDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNG 55
+S N QN I + + IIKGN++ L L V LI+ DPPYN +
Sbjct: 85 LSNMKKYNANGEQNIIKFNDTDNLIIKGNNLIALHTLKERYAGKVKLIYIDPPYNTGGDS 144
Query: 56 QLY 58
Y
Sbjct: 145 FKY 147
>gi|240047349|ref|YP_002960737.1| putative type III restriction-modification sys [Mycoplasma
conjunctivae HRC/581]
gi|239984921|emb|CAT04914.1| Putative type III restriction-modification sys [Mycoplasma
conjunctivae]
Length = 386
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 11/177 (6%)
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE-TLIWAS 156
P+G+++ +Y NI + L + + + + + +
Sbjct: 125 PDGSMFK--NYRNIINPMSYRYTLGKDLFDFSFNNGFIEIQQKKAKDGTKYWKAYRKVYE 182
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ + + SD I +G L + K KP L+ I
Sbjct: 183 KVTIKREKPYQIIPRVKGKNFSNLISDVKITTSNGKRNLISIIQNKDFAFPKPVKLIKYI 242
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDYI--DIATKRI 265
+ + ILD F GSGT+ +L R F + ++ I +I +RI
Sbjct: 243 INLISNKNARILDFFAGSGTTAHAVLELNREDGGNRSFTIVTNDENGIGTNICYERI 299
>gi|57505937|ref|ZP_00371861.1| site-specific DNA-methyltransferase, putative [Campylobacter
upsaliensis RM3195]
gi|57015737|gb|EAL52527.1| site-specific DNA-methyltransferase, putative [Campylobacter
upsaliensis RM3195]
Length = 277
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 42/98 (42%)
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
YD N+ L SE+ HP + +++ TK ++
Sbjct: 6 YDKRNTLNDLTGKEWLKLSSSFWFSEKCAADKDALRHPAPFLIKDIEKLISLFTKEKMVV 65
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
LD F GSGT+ A L+R IG ++ +Y+D+A +R
Sbjct: 66 LDIFCGSGTTLLSAYNLKRQGIGFDLNLEYLDLARERF 103
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQ------------LYRPDHSLVDAVTDSWD 73
G++ +L++L +S+D I PPY L + + + D
Sbjct: 118 GDNTKLLQELEDESIDYIVTSPPYFNILKNKASGLRANKSEKGFRNGARQGIQSYGDDNF 177
Query: 74 KFSSFEAYDAFT---RAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + Y+ F + CRRVLK L +I S I +
Sbjct: 178 NLENSKNYEEFLEKIFSIFSECRRVLKTKKYLSIIISDFTIDK 220
>gi|307261171|ref|ZP_07542846.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868902|gb|EFN00704.1| DNA methylase N-4/N-6 domain protein [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 530
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 17/140 (12%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I ++ L L + V I+ DPPYN + ++ +
Sbjct: 401 LLIHSDNFQALNLLQERYKEQVKCIYIDPPYNTNAS-EIIYKNGYK-------------H 446
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
++ + + R +L +G + V + + + + +
Sbjct: 447 SSWCSLLENRMTISRNLLSNDGLISVAIDGLEFSNLEMLTKEVFGVDNFITSIAIQHNPK 506
Query: 139 NFRGRRFQNAHETLIWASPS 158
F ++HE +I AS
Sbjct: 507 GREKEFFADSHEYMIIASKQ 526
>gi|323961306|gb|EGB56918.1| hypothetical protein ERGG_02257 [Escherichia coli H489]
Length = 411
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
Q L+ +L K GD +LDPF GSGT A ++ + +G+++ + +A
Sbjct: 49 QFSPQLIEYLLSKHCKKGDYVLDPFCGSGTVLREAARIGINALGMDVNPAAVCLA 103
>gi|260880994|ref|ZP_05893279.1| adenine specific DNA methylase Mod [Mitsuokella multacida DSM
20544]
gi|260850140|gb|EEX70147.1| adenine specific DNA methylase Mod [Mitsuokella multacida DSM
20544]
Length = 216
Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 21 DKIIKGNS---ISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I+ ++ + +LE L A+ VD I+ DPPYN Y D DS D++
Sbjct: 127 HTLIEADNYHALQLLEYLYAEKVDCIYIDPPYNTGARDWKYNND------YVDSSDQYR- 179
Query: 78 FEAYDAFT 85
+ +F
Sbjct: 180 HSKWLSFM 187
>gi|148259749|ref|YP_001233876.1| hypothetical protein Acry_0737 [Acidiphilium cryptum JF-5]
gi|146401430|gb|ABQ29957.1| hypothetical protein Acry_0737 [Acidiphilium cryptum JF-5]
Length = 407
Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
++ + +R + E + L + + T PGD++ DPF G GT+ A
Sbjct: 40 DYFINAFWTSGQRQAHAIHEISYRACFKPQLPAFFISRLTAPGDLVFDPFMGRGTTPVQA 99
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
++R G ++ + R+
Sbjct: 100 ALMQRRAAGNDINPLAALMCRPRLR 124
>gi|329765952|ref|ZP_08257515.1| DNA modification methylase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137583|gb|EGG41856.1| DNA modification methylase [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 465
Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 3/156 (1%)
Query: 115 GTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
+ ++ ++ + G+ + + + + S + Y+ +
Sbjct: 18 AAAYMGKSIHNISYLITYGRINKYSQTGKIVKKINNGITYVSKK-ELDNYSKQWSNQLKQ 76
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFF 232
D+ D + SE+ R K +LHP + L+ L K D+ILDPF
Sbjct: 77 RRDLLKIKDQELAFYHLSEKERTKHIHRLHPYLGKFIPQLVEYYLQKYFKVEDLILDPFM 136
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
GSGT+ AV +L IGI++ + IA ++
Sbjct: 137 GSGTTLAVCSELGMKSIGIDISEFNCMIARAKLEHY 172
>gi|190890137|ref|YP_001976679.1| DNA methylase [Rhizobium etli CIAT 652]
gi|190695416|gb|ACE89501.1| putative DNA methylase protein [Rhizobium etli CIAT 652]
Length = 230
Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P AL+S +L TKPGD++ DPF G GT+ V ++ R GIE + + +RI +
Sbjct: 40 FPGALVSALLDRFTKPGDVVFDPFVGLGTTFFVCEQRGRLPYGIEADRQRYEWVRERITA 99
Query: 268 VQ 269
Sbjct: 100 KH 101
Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 18/107 (16%)
Query: 20 KDKIIKGNSISV----LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
K +I G+S + L ++ D PPY P + + + +
Sbjct: 100 KHHLICGDSAELTAFDLPEM-----DFCITSPPY---------MPHWHKWNPLYNGDPDY 145
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
++ Y + + +K + L V + ++ +L
Sbjct: 146 DGYDVYLKRMQEIYGRICKRMKTDAYLVVQADNLTSEQFSPLVWDLG 192
>gi|325266724|ref|ZP_08133400.1| hypothetical protein HMPREF9098_1127 [Kingella denitrificans ATCC
33394]
gi|324981833|gb|EGC17469.1| hypothetical protein HMPREF9098_1127 [Kingella denitrificans ATCC
33394]
Length = 880
Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 32 LEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
L ++P S+D I+ DPP+ NL L G L +AV + K +F+ Y
Sbjct: 444 LNQIPDASIDYIYTDPPFGANIIYSEMNLILEGWLRVLSSEKPEAVINE-AKNKAFDDYG 502
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHN 110
R+ RVLKP W+ +HN
Sbjct: 503 LLMRSVFREYYRVLKPG--RWITVEFHN 528
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ T+ P ++ +++ T+PG+I+LD F G+G +G A++ R + +++ I+
Sbjct: 114 YHTKVPPEVIKKLIEHYTRPGEIVLDAFSGTGMTGVAARECGRHGVTVDLSPIATFISAV 173
Query: 264 RIAS 267
+
Sbjct: 174 NVNK 177
>gi|153007060|ref|YP_001381385.1| DNA methylase N-4/N-6 domain-containing protein [Anaeromyxobacter
sp. Fw109-5]
gi|152030633|gb|ABS28401.1| DNA methylase N-4/N-6 domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 947
Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 27/182 (14%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+P + + + ++ + + PG+++ DPF GSGT+ A L R + + IA
Sbjct: 79 YPAKFIPQIPANLIAALSLPGELVWDPFGGSGTTALEALLLGRQALSTDANPLAGHIARA 138
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFN--LLVER------GLIQ--PG--QILTNAQGN 311
+ ++ P L L + + +ER G + P Q T
Sbjct: 139 KCTALGPEQRDVLRALGQRVAALALDRGLEGFLERAWGAAKGFVPDIPNYEQWFTAQATR 198
Query: 312 ISATVC--------ADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINT 363
A V D L+S L SI VS ++ Y + +
Sbjct: 199 ELAYVRQLASAIADDDARLVSEVALSSI---VVAVSNQDS----ETRYTRRDKGHRPGDV 251
Query: 364 LR 365
LR
Sbjct: 252 LR 253
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 199 DGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G + + L +L +S ++PG ILDPF GSGT A+ +G ++
Sbjct: 534 HGIHDYKGKFYPQLAKTLLNLSVSQPGCRILDPFCGSGTVLLEAQLSGHRAVGFDLNPLA 593
Query: 258 IDIA 261
+ I+
Sbjct: 594 VLIS 597
Score = 39.3 bits (90), Expect = 0.94, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 13/85 (15%)
Query: 36 PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-------------DSWDKFSSFEAYD 82
+SVDLI PPY + LY + F+ Y
Sbjct: 296 EPESVDLIVTSPPYANATDYHLYHRFRLFWLGFDPRVLGSAEIGSHLRHQREKRGFDLYA 355
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGS 107
L R L+P ++
Sbjct: 356 DEMLGCLAGIARRLRPGRYCAMVIG 380
>gi|218884519|ref|YP_002428901.1| SufBD protein [Desulfurococcus kamchatkensis 1221n]
gi|218766135|gb|ACL11534.1| SufBD protein [Desulfurococcus kamchatkensis 1221n]
Length = 257
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
T+PGD++LDP GSGT+ AK L R+ I +++ + + +A R+ ++ L
Sbjct: 1 MYTRPGDVVLDPMVGSGTTLIEAKLLGRNSIDVDINYNAVMLALHRLYYLEKALADYLK 59
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
K+ G++ L L ++SVDL+ PPY
Sbjct: 90 KVYHGDARR-LSLLESESVDLVATHPPYF 117
>gi|54020499|ref|YP_115937.1| hypothetical protein mhp427 [Mycoplasma hyopneumoniae 232]
gi|53987672|gb|AAV27873.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
Length = 352
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/299 (15%), Positives = 91/299 (30%), Gaps = 26/299 (8%)
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + V + D KFS D + + L W G + I
Sbjct: 42 KNIQHLTTNIYVQNINDGSYKFS-----DEYIQERGKYKLIQLDRASLTWSEGLDYPIEY 96
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA--HETLIWASPSPKAKGYTFNYDAL 171
G + + + + ++R R + K ++ Y +
Sbjct: 97 NGKIYYAGGSQEKWQARHQGNRAVKDWRWRWARKKLDWGIKNGFIVFKNEKVFSKQYQFV 156
Query: 172 KAANEDVQMRSDWLI-----PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
N+ ++ S + G++ +N K+ KP L+ ++
Sbjct: 157 DNNNQKIERVSKFSNLILLAQGTEGTQEQKNIFSTKVFDHPKPIELIKYLINIHPNKNAK 216
Query: 227 ILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDYIDIAT-----KRIASVQPLGNIE 275
ILD F GSGT+G L R F + Q+ I I RI +
Sbjct: 217 ILDFFAGSGTTGHAVWDLNRQDGGNRIFTLVTNNQNNIAINITYERLFRINHGFGTKKEQ 276
Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRV 334
K+ +P + + N + +++ V +++ + S +++
Sbjct: 277 -NFDWIKKNQPYKTNLDVFRINYF--NTEIFNKENDVNLLVKKLEKMLTNFGISSKNKI 332
>gi|323136315|ref|ZP_08071397.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
gi|322398389|gb|EFY00909.1| DNA methylase N-4/N-6 domain protein [Methylocystis sp. ATCC 49242]
Length = 404
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 33/84 (39%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
++ + +R + E + L + + T+PGD + DPF G GT+ A
Sbjct: 36 YYVNEFWTAGQRQGHSLHEVSYRACFKPQLPAFFIDRFTQPGDSVCDPFMGRGTTPLQAA 95
Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
R G + + +A R+
Sbjct: 96 LQGRRAFGSDANPLSVLLARPRLR 119
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 7/136 (5%)
Query: 32 LEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L L SVDL+ PP+ N + + L R + VDA + + TRA
Sbjct: 264 LVHLGDASVDLVVTSPPFLDVVNYRADNWL-RNWFAGVDAEKIDISQLRDIGGWTRMTRA 322
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
RV++P G + + R G +L+ L + + + + + M N + +
Sbjct: 323 VFEELARVVRPGGHVAYEVG--EVRRGGVLLERLVWKAMEGLPFERMCVMINRQRFTKTS 380
Query: 148 AHETLIWASPSPKAKG 163
+ + +
Sbjct: 381 NCWGVANNAKGVNSNR 396
>gi|159897657|ref|YP_001543904.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159890696|gb|ABX03776.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
ATCC 23779]
Length = 251
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
+ W +ER++ G+ +H QKP L+ RI+ +S+ P D+I +PF G
Sbjct: 192 FTNVWQRDALRNAERIKTPQGKVIHLNQKPLDLMERIIAASSDPDDVIWEPFGG 245
>gi|289667550|ref|ZP_06488625.1| hypothetical protein XcampmN_03337 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 354
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ + ++PG+ + DPF G G++ A R+ G+E+ +A R+
Sbjct: 42 MRPFVRHFSQPGEQVFDPFCGFGSTLLAAALEGRNAHGMEIDPARAQLARTRLQRHAVEA 101
Query: 273 NIELTVLTGKRTE 285
+ + L K
Sbjct: 102 PVLIGTLVNKTPA 114
>gi|163785315|ref|ZP_02179963.1| DNA methylase N-4/N-6 domain protein [Hydrogenivirga sp.
128-5-R1-1]
gi|159879418|gb|EDP73274.1| DNA methylase N-4/N-6 domain protein [Hydrogenivirga sp.
128-5-R1-1]
Length = 386
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFI 249
+ ++ KP L+ ++L S+ P +ILD F GSGT+ KL R FI
Sbjct: 107 KLFKTIEVFDNPKPIELIEKVLRISSNPNSLILDFFAGSGTTAHAVMKLNNEDRGDRKFI 166
Query: 250 GIEMKQDYIDIATKRIASVQ 269
IEM + + RI V
Sbjct: 167 LIEMADYFETVIIPRIKKVA 186
>gi|145636495|ref|ZP_01792163.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae PittHH]
gi|145270320|gb|EDK10255.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae PittHH]
Length = 146
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 14/109 (12%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
V LI+ D P+N + D + S + F + L + +L
Sbjct: 4 KGKVKLIYIDVPFNTGNDSF----------GYNDKF----SRSTWLTFMKNRLEVAKDLL 49
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
+G ++V Y+ + +L + + P+
Sbjct: 50 ADDGVIFVHCDYNEDGYLRVLLDEIFTEDNFVANVAVRSSTPSGTKTAH 98
>gi|238809749|dbj|BAH69539.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 402
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 45/124 (36%)
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
T N +D+ + + + + + P L + T
Sbjct: 1 MKQTKNMRKSIKFFKDIDKKMFICEANLNKEYSPNSFNSISSYLAMFPVELPLYFIKKYT 60
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
K D ++D F G GT+ ++KL R F+G ++ ++ ++ ++ + IE +
Sbjct: 61 KENDTVMDNFSGRGTTAYASRKLNRKFVGNDLNPYAFVLSKSKLINISNIEKIEKRIKEL 120
Query: 282 KRTE 285
K
Sbjct: 121 KNKY 124
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ K + +++N SIF++ + S++ L L SVDL+ PPY ++
Sbjct: 234 LKIKWEIFLSKNYESIFKYWN------SLNSLNFLKNNSVDLVITSPPYLSLVDYTKSNW 287
Query: 61 DHSLVDAVTDSWDKFS-------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + K + Y F + +L+ LKP + ++ F
Sbjct: 288 LRLWLLGFEKNNLKKEIKLSDSLDLKEYTNFIKKYLINISSKLKPKAKVCLVIGDVYDFE 347
Query: 114 IGTMLQ 119
+ +
Sbjct: 348 LIENIW 353
>gi|241889993|ref|ZP_04777291.1| modification methylase RsrI [Gemella haemolysans ATCC 10379]
gi|329767391|ref|ZP_08258916.1| hypothetical protein HMPREF0428_00613 [Gemella haemolysans M341]
gi|241863615|gb|EER67999.1| modification methylase RsrI [Gemella haemolysans ATCC 10379]
gi|328836080|gb|EGF85771.1| hypothetical protein HMPREF0428_00613 [Gemella haemolysans M341]
Length = 84
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNL-----QLNGQLYRPDHSLVDAVTDSWDKFSS 77
II G I L KL + +VDLI DPPYN+ + L + + A WD
Sbjct: 4 IINGECIEELRKLDSSTVDLIITDPPYNIANFMNGRDTNLQKMRSNFFGAAG--WDDL-D 60
Query: 78 FEAYDAFTRAWLLA 91
F + R +L
Sbjct: 61 FNDWKDHMRLFLKN 74
>gi|312601382|gb|ADQ90637.1| Putative type III restriction-modification system: methylase
[Mycoplasma hyopneumoniae 168]
Length = 561
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 31/219 (14%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP----------------AKSVDLIF 44
+ + +L+ N+N+ + + +I G + L+ L A D+I+
Sbjct: 76 LEKDENLSFKSNENNQNQ--NTLIIGENYDALKNLLVLERERERERERERETAAGYDVIY 133
Query: 45 ADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
DPPYN Q G D + + S + L +++LK +G
Sbjct: 134 IDPPYNTQASFNEGNQVANDKENILPSKFIYRDKYSRNGWLNLLNERLNLAKKLLKDDGI 193
Query: 102 LWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSP 159
++V + + ++ + + ++VW+K N + + E ++ S +
Sbjct: 194 IFVSIDDNQQAYLKVLMDEIFGEENFVANLVWQKKNEGSAADSKFVKVLTEHVLAYSKNI 253
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK 198
+ N+ SD I ER + K
Sbjct: 254 QHLTTNIYVQ---NINDGSYKFSDEYIQ-----ERGKYK 284
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 26/299 (8%)
Query: 54 NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + V + D KFS D + + L W G + I
Sbjct: 251 KNIQHLTTNIYVQNINDGSYKFS-----DEYIQERGKYKLIQLDRASLTWSEGLDYPIEY 305
Query: 114 IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA--HETLIWASPSPKAKGYTFNYDAL 171
G + + + + +++ R + K ++ Y +
Sbjct: 306 NGKIYYAGGSQEKWQARHQGNRAVKDWQWRWARKKLDWGIKNGFIVFKNEKVFSKQYQFV 365
Query: 172 KAANEDVQMRSDWLI-----PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDI 226
N+ ++ S + G++ +N K+ KP L+ ++
Sbjct: 366 DNNNQKIERVSKFSNLILLAQGTEGTQEQKNIFSTKVFDHPKPIELIKYLINIHPNKNAK 425
Query: 227 ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIAT-----KRIASVQPLGNIE 275
ILD F GSGT+G +L RSF I Q+ I I RI +
Sbjct: 426 ILDFFAGSGTTGHAVLELNSQDGGTRSFTLITNNQNNIAINITYERLFRINHGFGTKKEQ 485
Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRV 334
K+ +P + + N + +++ V +++ + S +++
Sbjct: 486 -NFDWIKKNQPYKTNLDVFRINYF--NTEIFNKENDVNLLVKKLEKMLTNFGISSKNKI 541
>gi|281419824|ref|ZP_06250823.1| type III restriction-modification system methylation subunit
[Prevotella copri DSM 18205]
gi|281406124|gb|EFB36804.1| type III restriction-modification system methylation subunit
[Prevotella copri DSM 18205]
Length = 960
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK--KLRRSF 248
G + N+ G +L +KP L R++ + GD ILD F GS T K +
Sbjct: 676 GINNVHNEGGVQLPNGKKPVKLFERLIKMLSNDGDYILDIFAGSATIVHACLNSKSSHKY 735
Query: 249 IGIEMKQDYI-DIATKRIASVQPLGNIELTVLTGKR 283
I I+ Y + +R +V +L ++
Sbjct: 736 IAIQSDYSYFNEKTLRRAENVIYSSEWKLDKPVSRK 771
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 32/204 (15%)
Query: 3 QKNSLAINENQNSIFEWKDKI---------------IKGNSISVLEKLPA---KSVDLIF 44
+ N + + + E+K K+ I + L+ L + +
Sbjct: 380 EDNPFLVLDTKFFSAEFKHKLVGSMEKVDEECNGLLINSENFQALDLLQEKYRGKIGAVI 439
Query: 45 ADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
DPPYN + LY+ + D ++ + L +++ N + +
Sbjct: 440 TDPPYNTGGDDFLYKDN------YAD--------SSWLSLMSERLKLSYSLMRDNAWISL 485
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY 164
+ ++ + M+ ++ +N I + S+ + + + K
Sbjct: 486 NINDIELYNLVNMMSMQDWSNINQICVKMSHLSGMKMSHIDKKIPKIKEQIVTATKGSES 545
Query: 165 TFNYDALKAANEDVQMRSDWLIPI 188
T N + +DV R +
Sbjct: 546 TLNPIYEPCSWDDVFSRYVSWMEF 569
>gi|326403283|ref|YP_004283364.1| putative DNA methylase [Acidiphilium multivorum AIU301]
gi|325050144|dbj|BAJ80482.1| putative DNA methylase [Acidiphilium multivorum AIU301]
Length = 410
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 182 SDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
++ + +R + E + L + + T PGD++ DPF G GT+ A
Sbjct: 43 DYFINAFWTSGQRQAHAIHEISYRACFKPQLPAFFISRLTAPGDLVFDPFMGRGTTLVQA 102
Query: 242 KKLRRSFIGIEMKQDYIDIATKRIA 266
++R G ++ + R+
Sbjct: 103 ALMQRRAAGNDINPLAALMCRPRLR 127
>gi|237740846|ref|ZP_04571327.1| type III restriction-modification system methylation subunit
[Fusobacterium sp. 4_1_13]
gi|229431143|gb|EEO41355.1| type III restriction-modification system methylation subunit
[Fusobacterium sp. 4_1_13]
Length = 532
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 51/188 (27%), Gaps = 22/188 (11%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---------------FEAYDAFTR 86
+I+ DPPYN + ++ + + + + +
Sbjct: 1 MIYIDPPYNTGKDFVYKDNFKDNIENYKEITGQINKEGIKLTTNTDSDGRYHSKWLSMMY 60
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR-- 144
L R +L +G +++ + + + + + + + + N +G
Sbjct: 61 PRLKLARNLLTDDGVIFISIDDNEQANLKKICDEIFG---EENFIAQLSTIMNLKGNNDE 117
Query: 145 --FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
F HE + S + + N+ + + N EK
Sbjct: 118 FGFSGTHEFTVVYSKEKVSLKLNNLTVDEEELNDWKEDELGLYKQGANLKSTGVNAPREK 177
Query: 203 LHPTQKPE 210
P
Sbjct: 178 RPNLFFPI 185
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ + +F+N + +I + Y L +
Sbjct: 215 ITDTQEMSWRWSKSKFKNEFQNIIVSRFENNISIYKKQRPTLGDLPSKKPKTVFYKPEYS 274
Query: 190 SGSE--RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-- 245
SG+ +++ +K+ KP L+ + T IILD F GSGT+ +L
Sbjct: 275 SGNGTAQIKFLFNKKVFSNPKPIELIKDFFILGTNKNSIILDFFSGSGTTAHSVMQLNAE 334
Query: 246 ----RSFIGIEM 253
R +I +++
Sbjct: 335 DGGTRKYIMVQL 346
>gi|288819197|ref|YP_003433545.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
gi|288788597|dbj|BAI70344.1| DNA methylase [Hydrogenobacter thermophilus TK-6]
gi|308752779|gb|ADO46262.1| DNA methylase N-4/N-6 domain protein [Hydrogenobacter thermophilus
TK-6]
Length = 293
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 38/100 (38%)
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
+ + + S R + + + +++ T GD +
Sbjct: 29 NKTWSIKSYGPKEYFPEKTTVWSFPNRGSWATHKGNYRGNWSPYVPRNLILKYTNKGDWV 88
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
LD GSGT+ AK L R+ IG+++ D + +A R+
Sbjct: 89 LDQMMGSGTTLVEAKLLERNAIGVDINLDAVMVALDRLNF 128
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 23/160 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K G++ + L+K+ ++S+DLI PPY ++ + ++D S E Y
Sbjct: 136 KTYWGDARN-LDKIESQSIDLIATHPPYANMISY-------TKNKKLSDDL-SLLSPEEY 186
Query: 82 DAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNF------WILNDIVWRKS 134
R RVLKP +IG + + +IL + + +
Sbjct: 187 LKEMRKVAEESYRVLKPGKVCAILIGDTRKYKHYVPIAFRVMQVFLEAGFILREDIIKLQ 246
Query: 135 NPMPNFRGRRFQN-------AHETLIWASPSPKAKGYTFN 167
M R + AHE + K + Y
Sbjct: 247 WKMKATREKWRAKEYDFYLIAHEHIFVFRKPEKEEEYRKY 286
>gi|325965443|ref|YP_004243348.1| DNA methylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323471530|gb|ADX75214.1| DNA methylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 592
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ T+ P ++ ++ T PGD +LDPF GSG +G A R + ++ + IA
Sbjct: 27 YHTKVPPEGIAPVIEHYTNPGDTVLDPFCGSGMTGVAALLTGRKGLLSDLAPAAVHIA 84
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDK------------FSSF 78
L L +SVD +F DPP+ + S +D TD+ ++ S
Sbjct: 350 LRHLQDQSVDYVFTDPPFGANIYYSDASFLWESWLDDFTDTTNEAIVSTSLTAEHGGKSL 409
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIG 106
Y+ A RVLKP V+
Sbjct: 410 NDYEKLMSASFGEIARVLKPGAWASVMF 437
>gi|294678262|ref|YP_003578877.1| adenine-specific DNA-methyltransferase [Rhodobacter capsulatus SB
1003]
gi|294477082|gb|ADE86470.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodobacter
capsulatus SB 1003]
Length = 186
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
KD HPT KP + G + +PF GSG+ + R +E+ Y
Sbjct: 67 KDERPDHPTPKPLDAFGIPMRQHVARGGLCYEPFSGSGSQIMAGEANGRRVFAMEISPAY 126
Query: 258 IDIATKR 264
+D+A +R
Sbjct: 127 VDVAVER 133
>gi|289577729|ref|YP_003476356.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
Ab9]
gi|289527442|gb|ADD01794.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
Ab9]
Length = 259
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 45/105 (42%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + K + + + +++ ++ GD +LDP GSGT+ K L R
Sbjct: 14 WSFPERGKWKTHKGDYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSGTTLIETKILNRRG 73
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
IG ++ D +++ + + ++ + R ++ + +
Sbjct: 74 IGFDINPDSVELTKRNLDFDGDYKYEQIVRVGDVRNLKEISDSSI 118
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
L+++ S+DLI PPY + R + L + S + + ++
Sbjct: 110 LKEISDSSIDLIITHPPYLNIIKYSNGRIEGDLSN--------ISDVKKFCDELEKGVIE 161
Query: 92 CRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
RVLK + +IG + + L + K + + + N
Sbjct: 162 LYRVLKEDRYCAILIGDTRKSGHYIPLSYYVMRLFLKNGFVLKEDII-----KVQHNCKS 216
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
T W K Y ++ L + + + I +G
Sbjct: 217 TPYWEKQVEKYNFYMIMHEHLFIFRKPKKDENLNKIKYSTG 257
>gi|119383720|ref|YP_914776.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119373487|gb|ABL69080.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
PD1222]
Length = 883
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 10/177 (5%)
Query: 87 AWLLACRRVLKPNG-----TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
W + G Y T+L + D V++ N +
Sbjct: 675 EWDPEAKDWRNEGGYSRARWQIDAHGYMRSNGDRTLLPEELEGLDADQVYKV-WKAYNLQ 733
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
H + A TF +A+ DV +D + +E+ R G
Sbjct: 734 QVYDFEHHVQIGEALEVKGRLPPTFMLLPPHSAHPDVW--TDVARMMTINAEQAR--KGN 789
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
++H ++ R + T+PG+ + DPF G T A KL R IG+E+ + Y
Sbjct: 790 EMHLCPLQYDIVDRAIAQYTEPGEWVYDPFGGLMTVPFRAIKLGRKGIGVELNKGYW 846
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 21/202 (10%), Positives = 46/202 (22%), Gaps = 16/202 (7%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ + ++ + SV LI P++ Q P+++ D +
Sbjct: 503 VHNDCVAETRSMADASVQLIVTSIPFSTQYEYS---PNYADFGHTDDD-------PHFWQ 552
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
+ RVL+P + I F R
Sbjct: 553 QMGFLIPELLRVLEPGRICAIHVKDRIIP-----GGINGFGFQTLSTLHMDCVREFQRHG 607
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+T+ + Y + + + + + +G
Sbjct: 608 WAYLGMKTITTDVVRENNQTYRLGW-SEQCKDGSRMGCGVPEYLLIFRRPPSDTSNGYAD 666
Query: 204 HPTQKPEALLSRILVSSTKPGD 225
P +K + G
Sbjct: 667 RPVKKAKKEWDPEAKDWRNEGG 688
>gi|218461660|ref|ZP_03501751.1| putative DNA methylase protein [Rhizobium etli Kim 5]
Length = 213
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P AL+S +L TKPGD + DPF G GT+ V ++ R GIE + + +RI +
Sbjct: 28 FPGALVSALLDRFTKPGDAVFDPFVGFGTTFFVCEQRGRLPYGIEADRQRYEWVRERITA 87
Query: 268 VQ 269
Sbjct: 88 KH 89
Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 20 KDKIIKGNSISV----LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
K +I G+S + L ++ D PPY P + + + +
Sbjct: 88 KHHLICGDSAELAAFDLPEM-----DFCITSPPY---------MPHWHKWNPLYNGDPDY 133
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
++ Y + + +K N L V
Sbjct: 134 DGYDVYLKRMQEIYGRICQRMKTNAYLVVQAD 165
>gi|262276679|ref|ZP_06054481.1| DNA methylase N-4/N-6 domain protein [alpha proteobacterium
HIMB114]
gi|262225156|gb|EEY75606.1| DNA methylase N-4/N-6 domain protein [alpha proteobacterium
HIMB114]
Length = 353
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 25/206 (12%)
Query: 21 DKIIKGNSISV--LEKLPAKSV-DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
K++ G+S+ + L + ++ F PPYN G L ++ + S+D +
Sbjct: 164 HKLLCGDSLQENNYKLLLNNKIANISFTSPPYN---AGSLNIQGNNRTEEKYKSFDDNMT 220
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
YD F L + + IG N + L + DI++ K + +
Sbjct: 221 LSEYDEFININLTYLLEYSEE--VFYNIGLVQNNKKSIFNLIHSFNTKFKDIIYWKKSSV 278
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMRSDWLIPICSGSERL 195
+ N I A K K + N E S+
Sbjct: 279 APHIQKGIINNMVEFILAFGDGKRKFKNPQFSQGSYYNVIEGKNASSNEFS--------- 329
Query: 196 RNKDGEKLHPTQKPEALLSRILVSST 221
K+H P L I+ + T
Sbjct: 330 ------KIHKATFPIYLPENIIKNFT 349
>gi|34762302|ref|ZP_00143306.1| TYPE III RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|27888024|gb|EAA25087.1| TYPE III RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
Length = 524
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/186 (13%), Positives = 54/186 (29%), Gaps = 26/186 (13%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS---------------FEAYDAFTR 86
+I+ DPPYN + ++ + + + +
Sbjct: 1 MIYIDPPYNTGKDFVYKDNFTDNIENYKEITGQINKEGIKLTTNTETNGRYHSDWLNMMY 60
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
L R +L +G +++ + + + + + + P G
Sbjct: 61 PRLKLARNLLTDDGVIFISIDDNEQANLKKICDEIF----GEENFVAVAPRKTGAGSAAT 116
Query: 147 NAH-------ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
N+ + L S KAK + K ED + + + SGS+ R
Sbjct: 117 NSDSELRKLNDFLFIYLKSRKAKFRKNIKGSRKYPYEDKNGKYELVKLQASGSDATRRAR 176
Query: 200 GEKLHP 205
+ +
Sbjct: 177 PKMYYS 182
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 49/166 (29%), Gaps = 18/166 (10%)
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
LK +G+L + NI + + + M T
Sbjct: 184 YLKEDGSLTTDMNEKNIVKEIIPNKVNEEDGRWIWGKERFEEMKEK---------FTYYD 234
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
+ Y D E S + L K +K+ KP L+
Sbjct: 235 GETIYRKLYYDETEDQNVYQVEKAWFDSFTNAQGTKEFDELFKK--KKIFSHPKPIDLIK 292
Query: 215 RILVSSTKPGD-IILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
++ S K +ILD F GS T+ + R +I +++
Sbjct: 293 LLINLSNKENSFLILDFFSGSATTAHSVMQLNAEDGGNRKYIMVQL 338
>gi|293570789|ref|ZP_06681838.1| gp10 [Enterococcus faecium E980]
gi|291609142|gb|EFF38415.1| gp10 [Enterococcus faecium E980]
Length = 188
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 25/138 (18%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KD I + + + ++P S+D I D PY +WD
Sbjct: 4 KDTIYFEDCLEGMNRIPDDSIDAIICDLPYGT----------------TACAWDSI---- 43
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ R W RV+KP G + + G+ ++ + N + + +
Sbjct: 44 --LPWDRLW-AQYLRVIKPEGAIVLFGAEPFSTQLR--MSNFKDYKYDWYWVNNTATGFE 98
Query: 140 FRGRRFQNAHETLIWASP 157
F ++ + ET S
Sbjct: 99 FAKKQPMRSVETSSVFSK 116
>gi|32266537|ref|NP_860569.1| type II R/M system [Helicobacter hepaticus ATCC 51449]
gi|32262588|gb|AAP77635.1| type II R/M system [Helicobacter hepaticus ATCC 51449]
Length = 411
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D +D+ C ++ + P L + ++ GD++ DPF G GT
Sbjct: 9 DEINTNDYKQYFCRDFSKIHQI---TAYLAMFPPNLPYHFIKKYSQKGDLVFDPFSGRGT 65
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ A ++ R IG ++ + + +I
Sbjct: 66 TAFEACRMGRKGIGNDLNPLAVCLTKSKID 95
>gi|332186964|ref|ZP_08388705.1| DNA methylase family protein [Sphingomonas sp. S17]
gi|332012974|gb|EGI55038.1| DNA methylase family protein [Sphingomonas sp. S17]
Length = 863
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G + H ++ R + + PG+++ DPF G T A +L R +G E+ Y
Sbjct: 774 GLENHICPLQFDIVDRAIRLGSNPGELVYDPFGGLMTVPVRAMRLGRRGLGCELNPQYW 832
Score = 42.7 bits (99), Expect = 0.092, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ + ++ + SVDLI P+ D TD F Y
Sbjct: 502 VNNDCVAETRAMADNSVDLIVTSIPFGNHYEYSARYEDF----GHTDDNQHFFGQMDYLT 557
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYH 109
RVL+P ++
Sbjct: 558 P------ELLRVLRPGRLAFIHVKDR 577
>gi|110004831|emb|CAK99164.1| hypothetical n-6 adenine-specific dna methyltransferase
c-terminal truncated protein [Spiroplasma citri]
Length = 163
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+ G+S+ +L+K+P KS+DLI DPPY
Sbjct: 8 LYLGDSLEILKKIPDKSIDLILTDPPY 34
>gi|332884375|gb|EGK04641.1| hypothetical protein HMPREF9456_03410 [Dysgonomonas mossii DSM
22836]
Length = 266
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTK-----PGDIILDPFFGSGTSGAVAKKLRRSF 248
R + + +HPTQKP L+ R+L K P ++LD F GS ++
Sbjct: 126 RQIGERYKAIHPTQKPPRLIERLLALVCKIEPNKPKPLVLDTFRGSASTDIACMNFGVDC 185
Query: 249 IGIEMKQDYIDIATKRIASVQ 269
I E+ +Y D +R +
Sbjct: 186 ISFEIDDEYFDEGEERKSEHN 206
>gi|310641273|ref|YP_003946031.1| parb-like nuclease domain protein and DNA modification methylase
domain protein [Paenibacillus polymyxa SC2]
gi|309246223|gb|ADO55790.1| ParB-like nuclease domain protein and DNA modification methylase
domain protein [Paenibacillus polymyxa SC2]
Length = 84
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ HPT KP L+S + +S+K GDI+ D F GSG+ ++ R + +
Sbjct: 28 NEYHPTLKPIPLISYPIKNSSKLGDIVFDLFGGSGSMLIACEETNRICYTVSL 80
>gi|219849326|ref|YP_002463759.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aggregans DSM 9485]
gi|219543585|gb|ACL25323.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aggregans DSM
9485]
Length = 368
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + + T+PG+ +LDPF GSGT+ A++L R +G+E++ ++ +A+ Q
Sbjct: 151 PQIPRQFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRHAVGLELQATMVEHTRALLAAEQ 210
Query: 270 PLGNIELTVLTGK 282
P + G
Sbjct: 211 PAQETVAAIEQGD 223
>gi|5579431|gb|AAD45552.1|U70376_17 SpcG [Streptomyces netropsis]
Length = 272
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 35/248 (14%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
GNS+ +++ +P SVD + PP+ + D+ +A+ A
Sbjct: 21 HWGNSLELMKGIPDASVDAVVCSPPF----------------EGDALISDEGRRGDAFVA 64
Query: 84 FTRAWLLACRRVLKPNGTLW--VIGSY---------HNIFRIGTMLQNLNFWILNDIVWR 132
+ + +RVL+P G + + G + + + ++ + + + +
Sbjct: 65 WIEPFFRQFQRVLRPAGCVAFELGGIWLSDAPGKAVQHASALRALVASGWRLVQDFYYYN 124
Query: 133 KSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTF---NYDALKAANEDVQMRSDWLIPIC 189
P G T +W Y ++ + D P
Sbjct: 125 PQLLQPQPGGPPRAADSVTPVWVMARTHDVHYDVEALRRGDRRSVVRGNLLEFDSSGPWD 184
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS---GTSGAVAKKLRR 246
E+ + + + + P A+ + T+P P GS G + A++LRR
Sbjct: 185 QAYEKALARQRLEPYGDRWPTAVPELFIELLTRPRWTGPRP--GSPAPGATCFAAERLRR 242
Query: 247 SFIGIEMK 254
+IG+E
Sbjct: 243 RWIGVERD 250
>gi|42541077|gb|AAS19435.1| M.RsaI methyltransferase [Rhodobacter sphaeroides]
Length = 409
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 36/91 (39%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ ++ + +R + E + L + TKPGD++ DPF G G
Sbjct: 36 DSRDGIPYFINEFWTAGQRQAHSIHEVSYRACFKAQLPEFFIGRLTKPGDVVFDPFMGRG 95
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
T+ A + R G ++ + ++ R+
Sbjct: 96 TTPVQAALMERQAFGNDVNPLSVLLSRPRLR 126
Score = 36.2 bits (82), Expect = 9.1, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 17/76 (22%)
Query: 35 LPAKSVDLIFADPPY----------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+P SVDL PP+ L+ P+ + D + EA+
Sbjct: 273 IPDASVDLTVTSPPFLDIVQYAADNWLRCWFAGIEPEAVAI-------DMHKTEEAWTLM 325
Query: 85 TRAWLLACRRVLKPNG 100
L R+L+P G
Sbjct: 326 VNRVLREQARILRPGG 341
>gi|220930422|ref|YP_002507331.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
H10]
gi|220000750|gb|ACL77351.1| DNA methylase N-4/N-6 domain protein [Clostridium cellulolyticum
H10]
Length = 325
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ + D ++ H ++ R L T P DI+L PF G G+ A ++ R +GI
Sbjct: 241 NRKPARDDRDERHICPLQLDVIERALQLWTNPNDIVLSPFAGIGSEVYKAVQMGRRAVGI 300
Query: 252 EMKQDYIDIATKRIASVQPLGN 273
E+K+ Y A S++P +
Sbjct: 301 ELKESYYTQAVINCRSLEPELD 322
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 10/85 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G+ I VL+ +P S+ PP+ D S D+F Y
Sbjct: 16 YHGDCIEVLKGIPDNSIHYSVFSPPFASLYTYSNSERDM----GNCRSEDEF-----YLN 66
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSY 108
F RVL P L
Sbjct: 67 FEFLV-AELYRVLMPGRLLSFHCMD 90
>gi|300725812|ref|ZP_07059280.1| DNA methylase N-4/N-6 domain protein [Prevotella bryantii B14]
gi|299776912|gb|EFI73454.1| DNA methylase N-4/N-6 domain protein [Prevotella bryantii B14]
Length = 1028
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 4 KNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYR 59
K + ++ +I E + +I + LE L + V ++ DPPYN +G Y+
Sbjct: 446 KFKHQLVKSMENIDEQTNGLLINSENFQALELLQEKYRERVKCVYIDPPYNTGSDGFAYK 505
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
D++ ++ LL ++++ + ++ + + + +F +L
Sbjct: 506 -------------DQYKD-SSWLTMMENRLLIVKQLMTLDSSISISINENELFNSKCLLD 551
Query: 120 NLNFWILNDI 129
++ L
Sbjct: 552 SMFSKYLTTF 561
>gi|261840082|gb|ACX99847.1| hypothetical protein HPKB_1300 [Helicobacter pylori 52]
Length = 236
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 17/78 (21%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+ +IKGN++ L L K V I+ DPPYN + Y + +
Sbjct: 173 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN--------------FN 218
Query: 78 FEAYDAFTRAWLLACRRV 95
++ F + L R
Sbjct: 219 HSSWLVFMKNRLEVAREF 236
>gi|325564022|gb|ADZ31409.1| M.SpeI [Sphaerotilus natans]
Length = 78
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
+I+LDPF GSGT+ AK+L +++GIE+ Y IA +R+ + + R
Sbjct: 12 NNIVLDPFAGSGTTLVAAKQLGLTYLGIEINPTYAAIAKQRLGIDKAEPSSLTGQQEIFR 71
>gi|315506723|ref|YP_004085610.1| DNA methylase n-4/n-6 domain protein [Micromonospora sp. L5]
gi|315413342|gb|ADU11459.1| DNA methylase N-4/N-6 domain protein [Micromonospora sp. L5]
Length = 280
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
R R HP + + + + ++PGD++ DP G GT+ A L
Sbjct: 14 CQIPARDQRRGRYIPTTSSHPAKMLPHAAAHAIATYSRPGDLVFDPMCGVGTTLVEAMHL 73
Query: 245 RRSFIGIEMKQDYIDIATKRIA 266
R +GI+++ Y IA IA
Sbjct: 74 GRHGLGIDIEPRYTAIAEANIA 95
>gi|19703758|ref|NP_603320.1| Type III restriction-modification system methylation subunit
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|19713894|gb|AAL94619.1| Type III restriction-modification system methylation subunit
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 525
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 16/138 (11%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK---------------FSSFEAYDAFTR 86
+I+ DPPYN + ++ ++ +
Sbjct: 1 MIYIDPPYNTGKDFVYKDNFKDNIENYKKVTEQVSEEGSKLTTNTDSDGRYHSNWLNMMY 60
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRF 145
L R +L +G +++ + + + M R++
Sbjct: 61 PRLKLARNLLTDDGAIFISIDDNEVTNLKKMCDEIFGEENFIANFIRRTINSGKQDSLTA 120
Query: 146 QNAHETLIWASPSPKAKG 163
+ HE L+ S +
Sbjct: 121 SSYHEYLLTYSKNINEIK 138
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
S + + NY + + + S E + D K+ KP
Sbjct: 232 WKVYVKSYEYRDNNDNYVSPSNPYTTLDYVNKEFSNFNSSLELSKIFDKNKIFDFPKPIL 291
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
+ IL ST +ILD F GS T+ + R +I +++
Sbjct: 292 FIEDILKYSTNKNSLILDFFSGSATTAHAVMQLNVEDGGNRKYIMVQL 339
>gi|315427748|dbj|BAJ49343.1| site-specific DNA-methyltransferase (adenine-specific) [Candidatus
Caldiarchaeum subterraneum]
Length = 401
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 35 LPAKSVDLIFADPPY-NLQL---NGQLYRPD-HSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
+ +SVDLI PPY NLQ + L V S + Y F L
Sbjct: 254 IADESVDLIVTSPPYLNLQTYAWDNWLRLWFLGHDYRVVGKRLFATQSVKRYVEFMGRVL 313
Query: 90 LACRRVLKPNGTLWVIGSY 108
R+LKP G ++
Sbjct: 314 DEFFRMLKPGGYCVLVVGD 332
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ S + G R ++ P AL ++ ++ GD++LDPF G GT
Sbjct: 23 YISSGEVSDSWKGFGRSWGHSLHRIMSRTGSFPPALARWVVTRFSERGDLVLDPFSGKGT 82
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ A R +G ++ + + ++
Sbjct: 83 APLEACLTGRVGVGNDLAPEAYVVTRAKVK 112
>gi|315425973|dbj|BAJ47622.1| site-specific DNA-methyltransferase (adenine-specific) [Candidatus
Caldiarchaeum subterraneum]
Length = 398
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 35 LPAKSVDLIFADPPY-NLQL---NGQLYRPD-HSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
+ +SVDLI PPY NLQ + L V S + Y F L
Sbjct: 251 IADESVDLIVTSPPYLNLQTYAWDNWLRLWFLGHDYRVVGKRLFATQSVKRYVEFMGRVL 310
Query: 90 LACRRVLKPNGTLWVIGSY 108
R+LKP G ++
Sbjct: 311 DEFFRMLKPGGYCVLVVGD 329
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ S + G R ++ P AL ++ ++ GD++LDPF G GT
Sbjct: 20 YISSGEVSDSWKGFGRSWGHSLHRIMSRTGSFPPALARWVVTRFSERGDLVLDPFSGKGT 79
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ A R +G ++ + + ++
Sbjct: 80 APLEACLTGRVGVGNDLAPEAYVVTRAKVK 109
>gi|167038170|ref|YP_001665748.1| putative RNA methylase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167039121|ref|YP_001662106.1| putative RNA methylase [Thermoanaerobacter sp. X514]
gi|256750918|ref|ZP_05491802.1| putative RNA methylase [Thermoanaerobacter ethanolicus CCSD1]
gi|300913289|ref|ZP_07130606.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
gi|307723697|ref|YP_003903448.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
sp. X513]
gi|320116579|ref|YP_004186738.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166853361|gb|ABY91770.1| putative RNA methylase [Thermoanaerobacter sp. X514]
gi|166857004|gb|ABY95412.1| putative RNA methylase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256750253|gb|EEU63273.1| putative RNA methylase [Thermoanaerobacter ethanolicus CCSD1]
gi|300889974|gb|EFK85119.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X561]
gi|307580758|gb|ADN54157.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter sp. X513]
gi|319929670|gb|ADV80355.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 259
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + K + + + +++ ++ GD +LDP GSGT+ K L R
Sbjct: 14 WSFPERGKWKTHKGNYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSGTTLIETKILNRRG 73
Query: 249 IGIEMKQDYIDIATKRIASV 268
IG ++ D +++ + +
Sbjct: 74 IGFDINPDSVELTKRNLDFD 93
>gi|302339016|ref|YP_003804222.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
11293]
gi|301636201|gb|ADK81628.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
11293]
Length = 837
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 184 WLIPICSGSERLRNKDGEKL------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
W + R+R +GE+ H ++ RI+ + G+++LDPF G T
Sbjct: 730 WHPDVWDDVNRMRTLNGEQARKDLEFHICPLQFDIVERIINRYSSKGEVVLDPFGGLMTV 789
Query: 238 GAVAKKLRRSFIGIEMKQDYID 259
+A K+ R IG E+
Sbjct: 790 PYMAVKMGRYGIGYELNPQSFK 811
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 19/100 (19%)
Query: 19 WKDKII---------KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
W+ KII +++ + P SVDLI P++ D
Sbjct: 466 WEKKIIKKGKNWTAVNADNVIAIADRPDDSVDLIHTSIPFSNHYEYTPTYNDF----GHN 521
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
DKF Y RVLKP +
Sbjct: 522 VDNDKFFEQMDYLTP------ELMRVLKPGRVAAIHVKDR 555
>gi|71894184|ref|YP_278292.1| putative type III restriction-modification system: methylase
[Mycoplasma synoviae 53]
Length = 436
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 7/124 (5%)
Query: 44 FADPPYNLQ---LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
+ DPPYN + +G ++ L+ A + S + L +++LK G
Sbjct: 2 YIDPPYNTESAFADGNSISNNNELISASKFIYRDKFSRNGWLNMMYERLQLAKKLLKETG 61
Query: 101 TLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPMPNFRGRRFQ---NAHETLIWAS 156
++V + + ++ + P E ++ +
Sbjct: 62 IIFVSIDDNEQAYLKVLMDQIFGEENFIANISWIKKRGPGSNTSFINKVVKNCEYILMYA 121
Query: 157 PSPK 160
+
Sbjct: 122 KNYN 125
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 31/233 (13%), Positives = 66/233 (28%), Gaps = 19/233 (8%)
Query: 49 YN--LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--AFTRAWLLACRRVLKPNGTLWV 104
YN Q+ +++ + T+ + F Y R K L
Sbjct: 124 YNEDTQIGYKIHDLEKLKKLGYTNKDEFFEERGFYKLADLHHPSSSGAFRYSKSLDYLIE 183
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR--FQNAHETLIWASPSPKAK 162
+L+ + S + N G +N +
Sbjct: 184 APDGTKFELYSNILKPESACYTW---SEDSFNVGNKLGFIEIKKNPKGYWQAYRKQYQFV 240
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ ++ + + G E + + + + KP L+ +L S
Sbjct: 241 KFDPKEKSIVKVVAGQEFENYIENIYSQNGGKEIIEIFENKNVFDFPKPPDLIKYLLSFS 300
Query: 221 TKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRI 265
+LD F G GT+G + R++ + ++ I + +R+
Sbjct: 301 NNKNARVLDFFAGGGTTGHAVEDLNKQDGGNRTYTLVTNNENNIGYSVTYERL 353
>gi|266618971|ref|ZP_06111908.1| adenine specific DNA methyltransferase [Clostridium botulinum Bf]
gi|263529019|gb|EEZ28443.1| adenine specific DNA methyltransferase [Clostridium botulinum Bf]
Length = 98
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
QK L ++ + T G +LD GS R++I IE ++ + + A +RI
Sbjct: 27 QKLVELYEYLIKTYTNEGGTVLDFTAGSCVLAEACINTNRNYICIEKEKKHCNEAKERIK 86
Query: 267 SV 268
Sbjct: 87 LH 88
>gi|316984046|gb|EFV63024.1| type III restriction-modification system EcoPI enzyme mod
[Neisseria meningitidis H44/76]
Length = 478
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------- 243
G++ + + G K+ KP L+ ++ S+K D+ILD F GSGT+ +
Sbjct: 226 GTKEITDLFGSKIFTFPKPSQLIKFLVSISSKSNDLILDFFAGSGTTAHAVMQLNAEGQN 285
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
R +I +++ + + + R A + +I + + RV
Sbjct: 286 GNRRYICVQLPEKTAEKSEARKAGYPTIFDITKARIEKAAAKIRVE 331
>gi|308451426|ref|XP_003088667.1| hypothetical protein CRE_21673 [Caenorhabditis remanei]
gi|308246197|gb|EFO90149.1| hypothetical protein CRE_21673 [Caenorhabditis remanei]
Length = 1156
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 47/151 (31%), Gaps = 15/151 (9%)
Query: 132 RKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMRSDWLIPIC 189
S + G + L Y + D + + DV
Sbjct: 198 NWSRIIFGLNGEGRPQQKKYLDEVKKGRVPMTYWADDDMGEDPDVLGDVSWEHQESGHSQ 257
Query: 190 SGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR--- 245
+G L G T KP L+++++ P I+LDPF GSGT+G L
Sbjct: 258 AGVNELTAIVGAGHGFETVKPMKLITKLIQIWCPPNGIVLDPFAGSGTTGHAVLHLNHEQ 317
Query: 246 ---RSFIGIEM------KQDYIDIATKRIAS 267
R FI IE + R+
Sbjct: 318 GSERRFILIEQGRPENGDSYAKTLTVDRLRR 348
>gi|113477117|ref|YP_723178.1| ParB-like nuclease [Trichodesmium erythraeum IMS101]
gi|110168165|gb|ABG52705.1| ParB-like nuclease [Trichodesmium erythraeum IMS101]
Length = 419
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/201 (21%), Positives = 61/201 (30%), Gaps = 50/201 (24%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
L FADPPYN + WD + + WL+ K +
Sbjct: 269 KLAFADPPYNCGIA----------------EWDF------HFKWKHDWLIN-----KADL 301
Query: 101 TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
L G + L+ I N M +G H +
Sbjct: 302 VLVTPGD----ESLAGFLKKTEMPYRCTIAHWIKNGMS--KGAMGYGNHILGLVFCKEST 355
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS 220
T +G +L ++ E HP +KP L +
Sbjct: 356 PYKVT----------------GVRNQSFSTGVIKL-DETNETSHPGRKPLDFLVTWIEKL 398
Query: 221 TKPGDIILDPFFGSGTSGAVA 241
TKPGD I+DPF GSGT+ A
Sbjct: 399 TKPGDFIIDPFLGSGTTLFAA 419
>gi|313143493|ref|ZP_07805686.1| modification methylase BslI [Helicobacter cinaedi CCUG 18818]
gi|313128524|gb|EFR46141.1| modification methylase BslI [Helicobacter cinaedi CCUG 18818]
Length = 399
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 157 PSPKAKGYTFNYDALKAANE-DVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEAL 212
AK Y +A NE D W I + + ++ H P+ +
Sbjct: 277 KRFSAKTYFTQNEAFNRGNEIDKDFIYAWRRDIKAINPVIKINSKGQNTLGHTAPFPKEI 336
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ + G+ +LDPF G GTS VA KL R IGIE
Sbjct: 337 PEFAIKMFSYKGERVLDPFMGLGTSVKVADKLGRIGIGIERD 378
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 33/188 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI+ G+ + L+++ ++SV + PPY ++S AY
Sbjct: 84 KILWGDCLQGLKQMKSESVGAMVTSPPYYNARAYA-----------------QWSDLNAY 126
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ A L C RVL + + + +IF + + + +
Sbjct: 127 MSDMEAILRECYRVL--DNHRVFVFNVGDIFDNDNLFTRSTWGKRRLPLGAYFILLFEKV 184
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL--RNKD 199
G S + + N D C + +++
Sbjct: 185 G------------FSFVDDIIWDKGQVQSQRHKNGDKPYPYYQYPMNCYEHILIFHKHRS 232
Query: 200 GEKLHPTQ 207
E +P
Sbjct: 233 DETRYPCP 240
>gi|254168498|ref|ZP_04875342.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
gi|197622553|gb|EDY35124.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
Length = 1020
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 22/202 (10%)
Query: 28 SISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ L + + + I+ DPPYN + LY+ ++ ++
Sbjct: 505 NWQALNLMMEKYRERIKTIYIDPPYNTGGDEFLYKDNYQ--------------HSSWLTM 550
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
L + +L GTL V + + L N F L + + N +
Sbjct: 551 MENRLFLTKMILNDKGTLLVSIDDNEYVNL-YELSNRIFDFLGTFIVKVKIGGGNDN-KY 608
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-LIPICSGSERLRNKDGEKL 203
HE + + + + Y + + + +
Sbjct: 609 LVPEHEYVQFYAKNSNIIDYMWATPHEDYIKSFKHSDNKGLYYLDSLEKKGIDTNRPNLK 668
Query: 204 HPTQKP--EALLSRILVSSTKP 223
+P Q P + + + + +K
Sbjct: 669 YPIQAPDGKEIWPKTIWRLSKE 690
Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTK----PGDIILDPFFGSGTSGAVAKKLR- 245
G+ + G++++ KP LL ++ +ILD F GSGT+ L
Sbjct: 739 GNRDIEKLFGDRIYTYPKPVELLKYLVNIDDSIELSKNKVILDFFAGSGTTAHAVMMLNK 798
Query: 246 -----RSFIGIEMKQDYIDIATKRIASVQ 269
R FI +EM + + RI V
Sbjct: 799 EDGGKRKFILVEMADYFETVIIPRIKKVA 827
>gi|332884123|gb|EGK04393.1| hypothetical protein HMPREF9456_03417 [Dysgonomonas mossii DSM
22836]
Length = 229
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTK-----PGDIILDPFFGSGTSGAVAKKLRRSF 248
R + + +HPTQKP L+ R+L K P ++LD F GS ++ L
Sbjct: 138 RQIGERYKAIHPTQKPPRLIERLLALVCKIEPNKPKPLVLDTFRGSASTDIACMNLGVDC 197
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELT 277
I E+ +Y + +R + L
Sbjct: 198 ISFEIDDEYFEKGEERKLEHKINYQPSLF 226
>gi|224437021|ref|ZP_03658002.1| modification methylase BslI [Helicobacter cinaedi CCUG 18818]
Length = 409
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 157 PSPKAKGYTFNYDALKAANE-DVQMRSDWLIPICSGSERLRNKD---GEKLHPTQKPEAL 212
AK Y +A NE D W I + + ++ H P+ +
Sbjct: 287 KRFSAKTYFTQNEAFNRGNEIDKDFIYAWRRDIKAINPVIKINSKGQNTLGHTAPFPKEI 346
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ + G+ +LDPF G GTS VA KL R IGIE
Sbjct: 347 PEFAIKMFSYKGERVLDPFMGLGTSVKVADKLGRIGIGIERD 388
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 33/188 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
KI+ G+ + L+++ ++SV + PPY ++S AY
Sbjct: 94 KILWGDCLQGLKQMKSESVGAMVTSPPYYNARAYA-----------------QWSDLNAY 136
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ A L C RVL + + + +IF + + + +
Sbjct: 137 MSDMEAILRECYRVL--DNHRVFVFNVGDIFDNDNLFTRSTWGKRRLPLGAYFILLFEKV 194
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL--RNKD 199
G S + + N D C + +++
Sbjct: 195 G------------FSFVDDIIWDKGQVQSQRHKNGDKPYPYYQYPMNCYEHILIFHKHRS 242
Query: 200 GEKLHPTQ 207
E +P
Sbjct: 243 DETRYPCP 250
>gi|307263348|ref|ZP_07544965.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|306871314|gb|EFN03041.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 991
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I ++ L L + V I+ DPPYN + LY+
Sbjct: 432 LLIHSDNFQALNLLQERYKEQVKCIYIDPPYNANSSEILYKNTFK--------------H 477
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ + + + +L + V +G +L + NP
Sbjct: 478 SAWLSLMSNRIELGKNLLARESSQAVAIDEVEQELLGQLLSLTFTDWTKVALPIVHNPR- 536
Query: 139 NFRGRRFQNAHETLI 153
+G+ HE
Sbjct: 537 GQQGKNISYVHEYFY 551
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 202 KLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEM 253
K K + I+ + + +LD F GSGT+ R +I +E
Sbjct: 703 KNFSYPKSIHTVKEIVSAQLGSNEDNFVLDYFAGSGTTAHAVINLNREDNGNRKYILVEQ 762
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
+Y D ++P + K +P+V
Sbjct: 763 G-EYFDT------VLKPRVQKVIFAKEWKDGKPQVDNGAF 795
>gi|163784466|ref|ZP_02179340.1| type II DNA modification methyltransferase M.TdeIII [Hydrogenivirga
sp. 128-5-R1-1]
gi|159880263|gb|EDP73893.1| type II DNA modification methyltransferase M.TdeIII [Hydrogenivirga
sp. 128-5-R1-1]
Length = 241
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRIL 217
K + K E + +W + ER R K +LHP + L+ L
Sbjct: 57 KDYYEKNILNKEKKIKEKLGDEINWELSFDWIPERERTKHVHRLHPYKGKFIPQLVEYFL 116
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
K GDI+LDPF GSGT+ A ++ IGI++ + I + N+ L
Sbjct: 117 KRYFKEGDIVLDPFVGSGTTLIQANEMNIHSIGIDISE------FNTIITEVKFANVNLG 170
Query: 278 VLTGKRTEPRVAFNLLVERGLI 299
L K E + + E I
Sbjct: 171 ELQRKIKEILKSLKIYEENNQI 192
>gi|158313294|ref|YP_001505802.1| putative RNA methylase [Frankia sp. EAN1pec]
gi|158108699|gb|ABW10896.1| putative RNA methylase [Frankia sp. EAN1pec]
Length = 463
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
P + + ++ + ++PGD++LDPF GSGT A A ++RR IG ++ + ++
Sbjct: 54 FPAKFHPPVAQALIRNFSEPGDLVLDPFCGSGTLLAEAARMRRRSIGTDVDPVAVSVS 111
>gi|206895852|ref|YP_002247708.1| putative DNA methylase [Coprothermobacter proteolyticus DSM 5265]
gi|206738469|gb|ACI17547.1| putative DNA methylase [Coprothermobacter proteolyticus DSM 5265]
Length = 327
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
+ +++ + D++LD F GSGT+ AK L R +G+++ D + +A +
Sbjct: 125 IPRNVILRYSNENDVVLDQFVGSGTTLVEAKLLGRRGLGVDINPDAVKLALSNVNFEHKC 184
Query: 272 GNIELTVLTGK 282
G ++ + +
Sbjct: 185 GLADVHIGDAR 195
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 33/164 (20%)
Query: 15 SIFEWKDK-----IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAV 68
S ++ K + G++ + L+ + S+DLI PPY N+ D S D
Sbjct: 176 SNVNFEHKCGLADVHIGDARN-LDFVKDSSIDLICTHPPYSNIIKYSDNIEGDLSHYD-- 232
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH----NIFRIGTMLQNLNF- 123
+ RVLK V+ NI +G + +
Sbjct: 233 ---------IPEFLKEMYKVASESYRVLKRGRFCAVLMGDTRRKGNIIPLGFRVMEVFCK 283
Query: 124 ----------WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
++ + + AHE L
Sbjct: 284 AGLTLKEIVIKEQHNCTSTGYWKKQSIKYNFLLIAHEYLFIFKK 327
>gi|167896122|ref|ZP_02483524.1| DNA methylase [Burkholderia pseudomallei 7894]
gi|217424690|ref|ZP_03456187.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei 576]
gi|217392146|gb|EEC32171.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei 576]
Length = 160
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 24/171 (14%)
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+KP G L + + + ++Q + VW K+ R F E ++WA
Sbjct: 1 MKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRRGGFAQQAEFVVWA 60
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
S V + + + K H T+KP +
Sbjct: 61 SRGAMRGC-------------GVYLPGVFPCRLPLP----------KQHVTEKPLDIARE 97
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
++ G ++ D F GSGT A A++ ++G E Q Y I++ R+
Sbjct: 98 VVRLV-PAGVVVCDLFAGSGTFLAAAREAGLHWVGSETNQAYHAISSARLD 147
>gi|307943607|ref|ZP_07658951.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
TrichSKD4]
gi|307773237|gb|EFO32454.1| DNA methylase N-4/N-6 domain-containing protein [Roseibium sp.
TrichSKD4]
Length = 961
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+P + P + +++ + + PGD++ DPF GSGT+ A +L R + ++
Sbjct: 88 YPAKFPPQIPGQLIAALSFPGDLVFDPFGGSGTTAVEAVRLGRRTVSLDANP 139
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 23 IIKGNSI-SVLEKLPAKSVDLIFADPPYNLQLNGQLYRP--------DHSLVDAVT---- 69
++G++ + + SVDLI PPY + LY D + AV
Sbjct: 291 FVEGDARTDIGHTVAPASVDLIVTSPPYPNATDYHLYHRFRLFWLGWDPRELGAVEIGSH 350
Query: 70 -DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ F Y+ L C L+P I
Sbjct: 351 LKHQRNGTDFAEYETEMAKVLTDCFEALQPGRHAVFIVGD 390
Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G + + L +L +S G +LDP+ GSGT G +M
Sbjct: 547 HGLHAYKGKFYPQLAKSLLNTSGVECGAKVLDPYCGSGTVPLECLLNGYQAFGFDMNPLA 606
Query: 258 IDIA 261
IA
Sbjct: 607 AKIA 610
>gi|13541273|ref|NP_110961.1| adenine-specific DNA methylase [Thermoplasma volcanium GSS1]
gi|14324657|dbj|BAB59584.1| DNA adenine modification methylase [Thermoplasma volcanium GSS1]
Length = 347
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+ ++++ ++ + +LDPF GSGT+ AKKL R+ +GIE+ ++ + + +
Sbjct: 132 PQIPRQLILRFSRKDEWVLDPFSGSGTTLIEAKKLGRNSLGIEINEEVCKKSLEILN 188
>gi|190150016|ref|YP_001968541.1| methylation subunit, type III restriction-modification system
[Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|189915147|gb|ACE61399.1| putative methylation subunit, type III restriction-modification
system [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
Length = 960
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I ++ L L + V I+ DPPYN + LY+
Sbjct: 401 LLIHSDNFQALNLLQERYKEQVKCIYIDPPYNANSSEILYKNTFK--------------H 446
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ + + + +L + V +G +L + NP
Sbjct: 447 SAWLSLMSNRIELGKNLLARESSQAVAIDEVEQELLGQLLSLTFTDWTKVALPIVHNPR- 505
Query: 139 NFRGRRFQNAHETLI 153
+G+ HE
Sbjct: 506 GQQGKNISYVHEYFY 520
Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 202 KLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEM 253
K K + I+ + + +LD F GSGT+ R +I +E
Sbjct: 672 KNFSYPKSIHTVKEIVSAQLGSNEDNFVLDYFAGSGTTAHAVINLNREDNGNRKYILVEQ 731
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
+Y D ++P + K +P+V
Sbjct: 732 G-EYFDT------VLKPRVQKVIFAKEWKDGKPQVDNGAF 764
>gi|197294693|ref|YP_001799234.1| Putative methylase [Candidatus Phytoplasma australiense]
gi|171854020|emb|CAM11989.1| Putative methylase [Candidatus Phytoplasma australiense]
Length = 182
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 203 LHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+HPTQKP+ L ++++ S+ IL PF GS + VAKK ++IGIE+ DY+ +
Sbjct: 115 IHPTQKPQMLTNKLIDSAIMENQKGNILIPFAGSDSECLVAKKKNLNYIGIEINPDYVML 174
Query: 261 ATKRIASV 268
+ + +
Sbjct: 175 INEALKKI 182
>gi|308190040|ref|YP_003922971.1| hypothetical protein MFE_04910 [Mycoplasma fermentans JER]
gi|307624782|gb|ADN69087.1| hypothetical protein MFE_04910 [Mycoplasma fermentans JER]
Length = 223
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 36/82 (43%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ P L + TK D ++D F G GT+ ++KL R F+G ++ ++
Sbjct: 37 YLAMFPVELPLYFIKKYTKENDTVMDNFSGRGTTAYASRKLNRKFVGNDLNPYAFVLSKS 96
Query: 264 RIASVQPLGNIELTVLTGKRTE 285
++ ++ + IE + K
Sbjct: 97 KLINISNIEKIEKRIKELKNKY 118
>gi|313900238|ref|ZP_07833734.1| conserved hypothetical protein [Clostridium sp. HGF2]
gi|312954947|gb|EFR36619.1| conserved hypothetical protein [Clostridium sp. HGF2]
Length = 238
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 39/86 (45%)
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
I + +R + + + +++ T+ D++LD F GSGT+ AK
Sbjct: 7 QNTTIWNFPDRGNWATHKGDYRGNWSPHVPKNLILKYTEQKDLVLDCFVGSGTTLIEAKL 66
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQ 269
L R+ IGI++ + ++I R+
Sbjct: 67 LDRNAIGIDINKKALEITRNRLNFDC 92
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ G++ L+ + S+D I PPY + + +
Sbjct: 99 QLHLGDA-QNLKMVKDNSIDFICTHPPYADIIKYSKNIENDISNLEYN----------EF 147
Query: 82 DAFTRAWLLACRRVLKPNGTL-WVIGSYHN 110
A RVLKP+ ++IG
Sbjct: 148 LAHMNQVSKELYRVLKPSHFCSFMIGDIRK 177
>gi|307245564|ref|ZP_07527650.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307254519|ref|ZP_07536354.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258974|ref|ZP_07540705.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306853266|gb|EFM85485.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306862502|gb|EFM94461.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866998|gb|EFM98855.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 960
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I ++ L L + V I+ DPPYN + LY+
Sbjct: 401 LLIHSDNFQALNLLQERYKEQVKCIYIDPPYNANSSEILYKNTFK--------------H 446
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
A+ + + + +L + V +G +L + NP
Sbjct: 447 SAWLSLMSNRIELGKNLLARESSQAVAIDEVEQELLGQLLSLTFTDWTKVALPIVHNPR- 505
Query: 139 NFRGRRFQNAHETLI 153
+G+ HE
Sbjct: 506 GQQGKNISYVHEYFY 520
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 202 KLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAK------KLRRSFIGIEM 253
K K + I+ + + +LD F GSGT+ R +I +E
Sbjct: 672 KNFSYPKSIHTVKEIVSAQLGSNEDNFVLDYFAGSGTTAHAVINLNREDNGNRKYILVEQ 731
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
+Y D ++P + K +P+V
Sbjct: 732 G-EYFDT------VLKPRVQKVIFAKEWKDGKPQVDNGAF 764
>gi|206600139|ref|YP_002241644.1| gp60 [Mycobacterium phage Pacc40]
gi|206287227|gb|ACI12571.1| gp60 [Mycobacterium phage Pacc40]
Length = 1341
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
++ R++ + PG+++ DPF G GT A KL R G+E+ Y
Sbjct: 1268 DIVDRLITRFSNPGELVFDPFGGLGTVPLRALKLGRRGRGVELNPGYY 1315
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 16/52 (30%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ + E + SVDLI P++ D D W +
Sbjct: 655 NNDCVPETESMDDNSVDLIVTSIPFSNHYEYTPSYNDFGHTDDNAHFWAQMD 706
>gi|239827428|ref|YP_002950052.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. WCH70]
gi|239807721|gb|ACS24786.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. WCH70]
Length = 999
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+I+ + L + + I+ DPPYN + LY+ +
Sbjct: 444 LIRSENFQGLNLIRKRYERQAKCIYIDPPYNTGPSEILYKNNFK--------------HS 489
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
++ + L + +LK G + + + + + ++ N+ +I+ +P +
Sbjct: 490 SWLSLIENRLNISKNLLKDKGVIIIAIDDYELVHLCQLVDNILPSYERNIIVVNHHPQGS 549
Query: 140 FRGRRFQNAHET 151
G+ HE
Sbjct: 550 G-GKNISRTHEY 560
>gi|319776841|ref|YP_004136492.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
gi|319776968|ref|YP_004136619.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
gi|319777200|ref|YP_004136851.1| type ii r/m system DNA methylase [Mycoplasma fermentans M64]
gi|318037916|gb|ADV34115.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
gi|318038043|gb|ADV34242.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
gi|318038275|gb|ADV34474.1| Type II R/M system DNA methylase [Mycoplasma fermentans M64]
Length = 396
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 36/82 (43%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ P L + TK D ++D F G GT+ ++KL R F+G ++ ++
Sbjct: 37 YLAMFPVELPLYFIKKYTKENDTVMDNFSGRGTTAYASRKLNRKFVGNDLNPYAFVLSKS 96
Query: 264 RIASVQPLGNIELTVLTGKRTE 285
++ ++ + IE + K
Sbjct: 97 KLINISNIEKIEKRIKELKNKY 118
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ K + +++N SIF++ + S++ L L SVDL+ PPY ++
Sbjct: 228 LKIKWEIFLSKNYESIFKYWN------SLNSLNFLKNNSVDLVITSPPYLSLVDYTKSNW 281
Query: 61 DHSLVDAVTDSWDKFS-------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + K + Y F + +L+ LKP + ++ F
Sbjct: 282 LRLWLLGFEKNNLKKEIKLSDSLDLKEYTNFIKKYLINISSKLKPKAKVCLVIGDVYDFE 341
Query: 114 IGTMLQ 119
+ +
Sbjct: 342 LIENIW 347
>gi|289663951|ref|ZP_06485532.1| hypothetical protein XcampvN_12985 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 354
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 31/73 (42%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ + ++PG+ + DPF G G++ A R+ G+E+ +A R+
Sbjct: 42 MRPFVRHFSQPGEQVFDPFCGFGSTLLAAALEARNAHGMEIDPARAQLARTRLQRHAVEA 101
Query: 273 NIELTVLTGKRTE 285
+ ++ L K
Sbjct: 102 PVLISTLVNKTPA 114
>gi|308183573|ref|YP_003927700.1| putative RNA methylase [Helicobacter pylori PeCan4]
gi|308065758|gb|ADO07650.1| putative RNA methylase [Helicobacter pylori PeCan4]
Length = 379
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HP+ KP L+ I+ TK +++ D F G G + + R IG ++ Y DI
Sbjct: 142 RKEHPSPKPPQLMRDIISFFTKENELVFDYFAGVGGTLLGSSLCNRKAIGFDLSDRYKDI 201
Query: 261 ---ATKR--IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNIS 313
A + + + + L +L + N L LI P G +L+ + +
Sbjct: 202 YMKANRSLDLKEQKFICGDSLELLKNNNLMQNLFKNELASLILIDPPYGDMLSRPKTGET 261
Query: 314 ATVCAD 319
D
Sbjct: 262 LRQKKD 267
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLE--KLPAKSVD-----LIFADPPYN--- 50
+S + + S+ + K I G+S+ +L+ L LI DPPY
Sbjct: 194 LSDRYKDIYMKANRSLDLKEQKFICGDSLELLKNNNLMQNLFKNELASLILIDPPYGDML 253
Query: 51 --LQLNGQLYRPDHSLVDAVTDSWDK--FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ L + + T+ + +++ + + + + LK G L V
Sbjct: 254 SRPKTGETLRQKKDTSPTPFTNLKNDLGNMNWQEFLEKFKQIVECSIKYLKKGGHLIVFI 313
>gi|167760231|ref|ZP_02432358.1| hypothetical protein CLOSCI_02604 [Clostridium scindens ATCC 35704]
gi|167662114|gb|EDS06244.1| hypothetical protein CLOSCI_02604 [Clostridium scindens ATCC 35704]
Length = 957
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 6/230 (2%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
L++ADPPY R H L + + + RRV
Sbjct: 288 LVYADPPYF---KEHYSRYYHVLNTLCLYDYPAMAINPQTHELSIGRYREDRRVSDFGKK 344
Query: 102 LWVIGSYHN-IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+G++ I + T L ++ + ++ + + + S +
Sbjct: 345 AKALGAFETLITKCATAGTWLMISYSDNSIVDITDLQTLAEKQYDVLIEKVELSHSKQGR 404
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILV 218
+ + ++ + + + + + + +H KP ++S I+
Sbjct: 405 SSISKVDEYIFICRPKEFVHDVNEKLLVVKELKPIVDNPAGFMHNYMARKPYNVVSEIIK 464
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
I DP FGSGT+ A KL R IG ++ + ++
Sbjct: 465 RFCPDNGCIYDPMFGSGTTIIEASKLGRKAIGTDINLLAYKLCKTSLSKW 514
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 26/161 (16%)
Query: 9 INENQNSIFEWKDKIIKGNSISVLEK-------LPAKSVDLIFADPPY------------ 49
++E S + K+ + + + LP +SVDLI DPPY
Sbjct: 707 LSEKCKSFVDEKNIV-----LKNMPAQNISIDLLPNESVDLILTDPPYTDQVPYLEYNQL 761
Query: 50 NLQLNGQLYRPDHSLVDA--VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
++ G D SL D V+D+ + + + ++ A L LK NG +
Sbjct: 762 WYKVMGWQGFTDESLEDELVVSDAPSRNKNGDDFNRVFEAILSRISPALKTNGYFIMFYH 821
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNA 148
++ +L+ + L S
Sbjct: 822 SFDLKSWSDILKTMQEHGLAYCGQIPSATPRKSFKTIMTPK 862
>gi|78046293|ref|YP_362468.1| hypothetical protein XCV0737 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78034723|emb|CAJ22368.1| conserved hypothetical protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 354
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + ++PG+ + DPF G G++ A R+ G+E+ +A R+A
Sbjct: 42 MRPFVRHFSRPGEQVFDPFCGFGSTLLAAALEGRNAHGMEIDPARAQLARMRLARHA 98
>gi|300112784|ref|YP_003759359.1| DNA methylase N-4/N-6 domain-containing protein [Nitrosococcus
watsonii C-113]
gi|299538721|gb|ADJ27038.1| DNA methylase N-4/N-6 domain protein [Nitrosococcus watsonii C-113]
Length = 906
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 32 LEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
L +P SVD +F DPP+ N+ L ++ +A+T+S K Y
Sbjct: 468 LNNIPDNSVDFVFTDPPFGGNINYSEQNILAEWWLRLFTNNESEAITNSVQK-KGLPEYQ 526
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
A RVLKP W++ +HN
Sbjct: 527 ALMTQCFKEYYRVLKPG--RWMVVEFHNS 553
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 15/164 (9%)
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL--HPTQKPE 210
+ + P F + E + P + +N ++ + T+ P
Sbjct: 72 PYYTACPNPWMADFIAEWEAQKPEQPEGHHYHREPFAADVSEGKNDPIYRIPSYHTKVPP 131
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAV---AKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ ++ T+PGDI+LD F G+G +G K +R+ I I++ AT +
Sbjct: 132 KAIENYILHYTEPGDIVLDAFCGTGMTGVASLLCKPAKRNAILIDLSP----TATFTASI 187
Query: 268 VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
+ +L+ R V + L+ Q + +
Sbjct: 188 MNSPILNDLSKGQKGR------LGEFVTKKLLPLYQTEWDGKKQ 225
>gi|256395961|ref|YP_003117525.1| RNA methylase [Catenulispora acidiphila DSM 44928]
gi|256362187|gb|ACU75684.1| putative RNA methylase [Catenulispora acidiphila DSM 44928]
Length = 305
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 177 DVQMRSDWLIPI--CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
D S W R R + HP + A+ + + S T+PGD+++DP G
Sbjct: 9 DKPPLSVWATAQDGPRAQRRGRYLQESEAHPAKMFPAIAAHAIASYTRPGDLVVDPMCGI 68
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
GT+ A L R IG+E ++ + D+A + +
Sbjct: 69 GTTLVEAMHLDRMAIGVEYEKRWADLAVRNVEH 101
>gi|320353139|ref|YP_004194478.1| DNA methylase N-4/N-6 domain-containing protein [Desulfobulbus
propionicus DSM 2032]
gi|320121641|gb|ADW17187.1| DNA methylase N-4/N-6 domain protein [Desulfobulbus propionicus DSM
2032]
Length = 504
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 24/185 (12%)
Query: 2 SQKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADP------PY---- 49
+++ A++ + S+ + +I + S L+++P +SV + DP PY
Sbjct: 304 AERKYYAVSNDAASVENLGNDAWLINSDCRSALKEIPPESVAFVCTDPPHSDRIPYLELS 363
Query: 50 ---NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
N L + D V+++ ++ S Y++ + L RVLKPNG + +
Sbjct: 364 ELWNSLLGYSV---DFDSEIVVSNAKERNKSKINYNSEMTEFFLEISRVLKPNGYIALYF 420
Query: 107 ------SYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
S+ + I + LNF + + ++ + + R +N + +
Sbjct: 421 NARDEESWQYLKNIEKISGTLNFIGCFPMTYSATSVVQDNRKGAMKNDYIIIYQKGQPYT 480
Query: 161 AKGYT 165
T
Sbjct: 481 GHPLT 485
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KP L ++ TK D+++DPF GSG R F+GI++ I+ A+ +
Sbjct: 45 KKPIESLCYLVEKCTKEEDVVMDPFLGSGLISLECVLRNRRFVGIDINPFSIEHASFLLD 104
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ + ++ L G I L +S +
Sbjct: 105 LPTSQEYYQALIEIENSVAEKIRNTYLTSEGKI-ASHYLWEGDQIVSVWIKP 155
>gi|319644070|ref|ZP_07998629.1| hypothetical protein HMPREF9011_04232 [Bacteroides sp. 3_1_40A]
gi|317384418|gb|EFV65386.1| hypothetical protein HMPREF9011_04232 [Bacteroides sp. 3_1_40A]
Length = 155
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 50/166 (30%), Gaps = 25/166 (15%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
+ E + I + I ++ + SVD + AD PY + WD+
Sbjct: 1 MIEIDN-IYNMDCIEGMKLMANGSVDAVIADLPYGVLNRSNKAA-----------HWDRQ 48
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
EA W RR+ KP + + IF ML W N + +
Sbjct: 49 IPLEA------LW-EQYRRITKPGSPVILFA--QGIFSARLMLSQPRMWRYNLVWRKDRV 99
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
R HE +I + ++ + E M
Sbjct: 100 TGHLNANRMPLRQHEDIIVF----YDRQPVYHPQMMPCPPERKIMD 141
>gi|306818334|ref|ZP_07452060.1| type III restriction-modification system [Mobiluncus mulieris ATCC
35239]
gi|304648843|gb|EFM46142.1| type III restriction-modification system [Mobiluncus mulieris ATCC
35239]
Length = 172
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFADPP 48
+ ++ F+ + I+G+++ VL+ L V +I+ DPP
Sbjct: 82 KKSRSRDGKDGSFDSDNIYIEGDNLEVLKLLQRGYHGKVKMIYIDPP 128
>gi|325925792|ref|ZP_08187164.1| DNA modification methylase [Xanthomonas perforans 91-118]
gi|325929114|ref|ZP_08190263.1| DNA modification methylase [Xanthomonas perforans 91-118]
gi|325540532|gb|EGD12125.1| DNA modification methylase [Xanthomonas perforans 91-118]
gi|325543778|gb|EGD15189.1| DNA modification methylase [Xanthomonas perforans 91-118]
Length = 354
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + ++PG+ + DPF G G++ A R+ G+E+ +A R+A
Sbjct: 42 MRPFVRHFSRPGEQVFDPFCGFGSTLLAAALEGRNAHGMEIDPARAQLAHTRLARHA 98
>gi|268322412|emb|CAX37147.1| Pseudogen of Type III restriction modification system : methylase
(part 2) [Mycoplasma hominis ATCC 23114]
Length = 399
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 14/181 (7%)
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS-ERLRNKDGEK 202
+N+++ + + + + + Q + G E +++ +K
Sbjct: 177 CKKNSNDEWVAFRKQYQFVKFDPRTKKIVKISAGQQYENIIDNIYSQGGGENMKSIFSDK 236
Query: 203 -LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQ 255
+ KP L+ ++ P ILD F GSGT+G R+F + +
Sbjct: 237 NIFDFPKPIELIKYLINIHPNPDARILDFFAGSGTTGHAVLDLNKEDGGNRTFTLVTNNE 296
Query: 256 DY--IDIATKRIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
+ I++ +R+ + E K+ EP + E +
Sbjct: 297 NNIGINVCYERLYRINNGKGSKGETDFDWIKKNEPYNQNLDVFEVNYY--NTDAFDNNNE 354
Query: 312 I 312
I
Sbjct: 355 I 355
>gi|297161974|gb|ADI11686.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
Length = 317
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G HP + A+ + + + T+PGD++LDP G GT+ A L R G E + + +
Sbjct: 26 GSADHPAKMLPAIAAHAIRTYTQPGDLVLDPMCGIGTTLVEAVHLGRHAFGTEYEPKWAN 85
Query: 260 IATKRIA 266
+A +A
Sbjct: 86 MARTNLA 92
>gi|302866307|ref|YP_003834944.1| DNA methylase N-4/N-6 domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302569166|gb|ADL45368.1| DNA methylase N-4/N-6 domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 332
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R R HP + A+ + + + T+PGD++LDP G GT+ A R IG+E
Sbjct: 56 RGRYVRESVQHPARMLPAIAAHAVTAYTQPGDLVLDPMCGIGTTLVEAIHSGRDAIGVEY 115
Query: 254 KQDYIDIATKRIASVQ 269
+ + DIA I
Sbjct: 116 ESRWSDIADANIKHAH 131
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 23 IIKGNSISVLEKLP---AKSVDLIFADPPYNLQLNGQLYRPDHSLV----DAVTDSWDKF 75
+I+G++ +L +P V L+ PPY L RP V +A D DK
Sbjct: 141 VIRGDATRILSLVPGALTGQVALVVTSPPYG-PTVHGLVRPGADGVAKFDNAYNDGTDKG 199
Query: 76 SSFEAYDAFTR------AWLLACRRVLKPNGTLWV 104
AY T L C +L+P G + V
Sbjct: 200 --NLAYRDLTGLADGFAQILAGCHTLLRPGGVVVV 232
>gi|167826050|ref|ZP_02457521.1| DNA methylase [Burkholderia pseudomallei 9]
gi|226198125|ref|ZP_03793696.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
Pakistan 9]
gi|225929645|gb|EEH25661.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
Pakistan 9]
Length = 160
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 24/174 (13%)
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+KP G L + + + ++Q + VW K+ R F E ++WA
Sbjct: 1 MKPGGLLVSFIDWRQLPTLTDVVQAAGLILRGVAVWDKTLGRMRLRRGGFAQQAEFVVWA 60
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
S DV + + + K H T+KP +
Sbjct: 61 SRGAMRGC-------------DVYLPGVFPCRLPLP----------KQHVTEKPLDIARE 97
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++ G ++ D F SGT A A++ ++G E Q Y I++ R+ +
Sbjct: 98 VVRLV-PAGGVVCDLFAASGTFLAAAREAGLHWVGSESNQAYHAISSARLDATA 150
>gi|332674241|gb|AEE71058.1| DNA (cytosine-5-)-methyltransferase domain protein [Helicobacter
pylori 83]
Length = 379
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HP+ KP L+ I+ TK +++ D F G G + + R IG ++ Y DI
Sbjct: 142 RKEHPSPKPPQLMRDIISFFTKENELVFDYFAGVGGTLLGSSLCNRKAIGFDLSDRYKDI 201
Query: 261 ---ATKR--IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNIS 313
A K + + + L +L + N L LI P G +L+ + +
Sbjct: 202 YMKANKSLDLKEQKFICGDSLELLKNNNLMQNLFKNELAGLILIDPPYGDMLSRPKTGET 261
Query: 314 ATVCAD 319
D
Sbjct: 262 LKQKKD 267
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLE--KLPAKSVD-----LIFADPPYN--- 50
+S + + S+ + K I G+S+ +L+ L LI DPPY
Sbjct: 194 LSDRYKDIYMKANKSLDLKEQKFICGDSLELLKNNNLMQNLFKNELAGLILIDPPYGDML 253
Query: 51 --LQLNGQLYRPDHSLVDAVTDSWDK--FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ L + + T+ + +++ + + + + LK G L V
Sbjct: 254 SRPKTGETLKQKKDTSPTPFTNLKNDLGNMNWQEFLEKFKQIVGCSIKYLKKGGHLVVFI 313
>gi|327398568|ref|YP_004339437.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
DSM 10411]
gi|327181197|gb|AEA33378.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
Length = 380
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 42/104 (40%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
N N + + +R + + + ++++ TK G
Sbjct: 116 KTNKINDINLNRWKEYDEIITDSLWIFDKRDTSGAHHAWYWGNFIPQIPHQLMLRYTKKG 175
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
D +LDP GSGT+ ++L R+ IGIE+ D ++ A K I
Sbjct: 176 DWVLDPLVGSGTTLIECRRLGRNGIGIEINPDVVEKAKKLIEKE 219
Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 17/159 (10%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISV-LEKLPAKS----VDLIFADPPYNLQLNGQLY 58
+ + + E + + F II G+S + L+K+ + + L+ PPY
Sbjct: 210 EKAKKLIEKEPNRFNVTTDIITGDSTQIDLKKILEEKNVKKIQLVIIHPPY--------- 260
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL-WVIGS-YHNIFRIGT 116
D D + + + L VL+ L VIG Y I
Sbjct: 261 -HDIIKFSNNPDDLSNAKTVDKFLEMFGKVLDNVLPVLEEGRYLGIVIGDKYSKGEWIPL 319
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+N + + KS + NF R + + L
Sbjct: 320 GFYVMNEVLKREKFVLKSIIVKNFEETRAKRNQKELWRY 358
>gi|237750642|ref|ZP_04581122.1| DNA methyltransferase [Helicobacter bilis ATCC 43879]
gi|229373732|gb|EEO24123.1| DNA methyltransferase [Helicobacter bilis ATCC 43879]
Length = 191
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ I S + K+ SVDLI PPY N++ + D + S +
Sbjct: 1 MNTIFYK-SSQNMSKVSDCSVDLIITSPPYFNIKDYAKNGYQDLIHSHSKKGDLGAISEY 59
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWV 104
+ Y C RVLKPNG L +
Sbjct: 60 KIYIQELLKVWRECERVLKPNGKLCI 85
>gi|167760088|ref|ZP_02432215.1| hypothetical protein CLOSCI_02460 [Clostridium scindens ATCC 35704]
gi|167662213|gb|EDS06343.1| hypothetical protein CLOSCI_02460 [Clostridium scindens ATCC 35704]
Length = 271
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
I S ER + + +++ +K D ILD F GSGT+ AK L
Sbjct: 36 DTTIWSFPERGSWATHSGKYRGNWSPYIPRNLILRYSKKKDWILDQFLGSGTTLIEAKLL 95
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
R+ IG+++ + + ++ +
Sbjct: 96 GRNAIGVDINSEAVKLSNTNLNFTC 120
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 35/144 (24%), Gaps = 10/144 (6%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
L + +S+DLI PPY + P E +
Sbjct: 136 LSFIKDESIDLICTHPPYADIIRYSKEIPGDISHLKY----------EKFLKELEQVARE 185
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
RVLK G ++ L + + ++ + + +
Sbjct: 186 SYRVLKRQGICAIMIGDIRRKGYVLPLGMNSMQKFVEAGFKLKEIIIKEQHNCRSAYYWE 245
Query: 152 LIWASPSPKAKGYTFNYDALKAAN 175
A Y F + N
Sbjct: 246 GRERKFLMLAHEYIFILEKTDCYN 269
>gi|189485129|ref|YP_001956070.1| type III restriction-modification system methylase subunit
[uncultured Termite group 1 bacterium phylotype Rs-D17]
gi|170287088|dbj|BAG13609.1| type III restriction-modification system methylase subunit
[uncultured Termite group 1 bacterium phylotype Rs-D17]
Length = 866
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 17/96 (17%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
++I + L L + + I+ DPPYN + S + + + D
Sbjct: 372 RLIHSENYQALNTLQERYKEKIQCIYIDPPYNT---------NSSPIIYINNYKD----- 417
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
++ + R++LK NG + +
Sbjct: 418 SSWLTIIHNRMELSRKLLKDNGINITAIDDIELRYL 453
>gi|320193607|gb|EFW68242.1| modification methylase, putative [Escherichia coli WV_060327]
Length = 923
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 189 CSGSERLRNKDGEKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
S +E G +HP L ++ + G+ +LDPF GSGT+ A KL R
Sbjct: 41 WSFTEVDTRLPGHDIHPYPAKFIPQLPHGLISRLSGRGETVLDPFGGSGTTALEAVKLGR 100
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
I I+ I + A ++P L +E G + P ++
Sbjct: 101 KAISIDANPLSALIGRVKTARLEPETLKALNAH-------HSVLLTHLEGGHLSPSSLI 152
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT-------------DSWDKFSSFEA 80
KLP DL+ PPY + LY L + S FE+
Sbjct: 268 KLPDGIADLVVTSPPYGNATDYHLYHRFRLLWLGFDPIALGHVEIGSHLKHQRESSGFES 327
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSY 108
Y A A L R LKP ++
Sbjct: 328 YLADMEAALATMHRALKPGRYAALVIGD 355
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 23 IIKGNSIS---VLEK-LPAKSVDLIFADPPYNLQLNG 55
I +G++ ++ L + SVDL+ PPY L
Sbjct: 716 ITEGDNRKPDTFMKLGLESGSVDLVLTSPPYGTALPY 752
Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G + + L +L S PG +LD F GSGT+ G +M
Sbjct: 508 HGIHSYKGKFYPQLAKSLLNISGFGPGATVLDLFCGSGTTLLEGYLNGFRTFGCDMNPLA 567
Query: 258 IDIATKRIASVQPLGN 273
I+ ++ ++ +
Sbjct: 568 AKISRAKLGVLELNPD 583
>gi|120610367|ref|YP_970045.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
citrulli AAC00-1]
gi|120588831|gb|ABM32271.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
Length = 835
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 184 WLIPICSGSERLRNKDGEKL------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + R+R +GE+ H ++ R + + G+ + DPF G GT
Sbjct: 730 PDPNVWTDIARMRTLNGEQANRSVEKHICPLQFDIVDRAIERWSMRGEKVYDPFHGLGTV 789
Query: 238 GAVAKKLRRSFIGIEMKQDYI 258
G A KL R G E+ Y
Sbjct: 790 GVRAIKLGRRAGGSELNPGYF 810
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 10/117 (8%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + + P SVDLI P+ D + W++ F
Sbjct: 481 HNDCVLEAREQPENSVDLIVTSIPFANHYEYSPSYNDFGHTEGNAHFWEQMD-------F 533
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R+LKP + +F T L + ++ +
Sbjct: 534 LTP---ELYRILKPGRIAAIHVKDRVLFGNVTGLGRPSMDYFHEEASMHLRKHGFHK 587
>gi|83589501|ref|YP_429510.1| DNA methylase N-4/N-6 [Moorella thermoacetica ATCC 39073]
gi|83572415|gb|ABC18967.1| DNA methylase N-4/N-6 [Moorella thermoacetica ATCC 39073]
Length = 852
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
Y + D + P+ + +N H T+ P + + +
Sbjct: 63 CPNPYLGEFIRRYGKPYDEATDTYQRPPLVADVTEGKNDPVYNAHSYHTKVPHKAIMKYI 122
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
T+PGDI+ D F GSG +G A+ L R I ++ IA
Sbjct: 123 EHYTEPGDIVFDGFCGSGMTGVAAQLLGRRAILCDLSPAATFIAYN 168
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 34 KLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ +D IF DPP+ L L ++ +A+ + + Y
Sbjct: 456 SIYNNCIDYIFTDPPFGSNLMYSELNFLWEAWLRVFTNNRPEAIINET-QGKGLPEYKEL 514
Query: 85 TRAWLLACRRVLKPNGTLWVIG 106
A R+LKPN + V+
Sbjct: 515 MTACFKEMYRLLKPNRWMTVVF 536
>gi|291228539|ref|XP_002734235.1| PREDICTED: predicted protein-like, partial [Saccoglossus
kowalevskii]
Length = 772
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ P ++ N+ I +++ +G+ + QKP+
Sbjct: 570 NINRVCPWGGDCVLCRKMESSH-LNQVHVDEPQHNFWIVKAESVIKDGEGDVVSKKQKPQ 628
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
L +++ + ILD G+GT V R+ +G+++ + ++ K + +
Sbjct: 629 QLYEKVIKLCSSKSAWILDGTCGAGTGIMVGLLHSRNVVGVDINEKCVNYCKKWFQNRRS 688
Query: 271 LGN 273
Sbjct: 689 QKR 691
>gi|120610429|ref|YP_970107.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
citrulli AAC00-1]
gi|120588893|gb|ABM32333.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
Length = 835
Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 184 WLIPICSGSERLRNKDGEKL------HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + R+R +GE+ H ++ R + + G+ + DPF G GT
Sbjct: 730 PDPNVWTDIARMRTLNGEQANRSVEKHICPLQFDIVDRAIERWSMRGEKVYDPFHGLGTV 789
Query: 238 GAVAKKLRRSFIGIEMKQDYI 258
G A KL R G E+ Y
Sbjct: 790 GVRAIKLGRRAGGSELNPGYF 810
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 10/117 (8%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + + P SVDLI P+ D + W++ F
Sbjct: 481 HNDCVLEAREQPENSVDLIVTSIPFANHYEYSPSYNDFGHTEGNAHFWEQMD-------F 533
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R+LKP + +F T L + ++ +
Sbjct: 534 LTP---ELYRILKPGRIAAIHVKDRVLFGNVTGLGRPSMDYFHEEASMHLRKHGFHK 587
>gi|319794044|ref|YP_004155684.1| DNA methylase n-4/n-6 domain protein [Variovorax paradoxus EPS]
gi|315596507|gb|ADU37573.1| DNA methylase N-4/N-6 domain protein [Variovorax paradoxus EPS]
Length = 467
Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 204 HPTQKPEALLSRILV--SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ PE+ SRI+ S + +I DP+ GSGT+ A KL + G+++ + +A
Sbjct: 65 YYAGFPESFASRIIETASLSSKKAVIFDPWNGSGTTTYAAAKLGYNSHGMDLNPVMVLVA 124
Query: 262 TKR 264
R
Sbjct: 125 RAR 127
>gi|206891175|ref|YP_002248577.1| DNA methylase domain protein [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206743113|gb|ACI22170.1| DNA methylase domain protein [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 389
Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ G +P P ++ +L T+PGD++LDP GSGT+ V ++ R I ++
Sbjct: 161 KTPKGNNKYPGVTPAFIIYNLLKRYTEPGDLVLDPMAGSGTTFDVCREEGRRCIAFDISP 220
Query: 256 DYIDIATK 263
+I
Sbjct: 221 TRSEIIQN 228
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
II+ ++ S+ L +SVD+IF D PY + + A T E +
Sbjct: 225 IIQNDARSI--PLDNESVDMIFIDSPYGDNIRYNENPNCIGKISAET---------EDFY 273
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ C RVLKP L + + + T + F L + +
Sbjct: 274 NELEKVMKECHRVLKPGKILAWLIGDQWVKKKFTPVGFRIFERLCKYF--EPVDIICVVR 331
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
R + + F Y + + S I +N+D
Sbjct: 332 RGQTSNTGVWYNRAIRFNFYLRGFKYLHIMRKPDIKTKESKTKRKINWTQYERKNED 388
>gi|296109108|ref|YP_003616057.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus infernus
ME]
gi|295433922|gb|ADG13093.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus infernus
ME]
Length = 305
Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SV 268
+ +++ +K G+ +LDPF GSGT+ AK L R+ IG+++ +D + + R+ +
Sbjct: 73 PQVARNLILRYSKEGETVLDPFVGSGTTLIEAKLLFRNAIGVDINRDAVMLTLDRLRFNY 132
Query: 269 QPLGNIELTVLTGK 282
PL E K
Sbjct: 133 NPLDINEKPKTWIK 146
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
N L INE + K+ G++ + L+K+ +S+DLI PPY + ++
Sbjct: 133 NPLDINEKPKTWI----KVFVGDARN-LDKIEDESIDLIATHPPY-------VNIVKYTK 180
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNF 123
V K S E + R RVLKP +IG + +
Sbjct: 181 KSEVDGDLSKVRSVEDFVNEMRKVAREFFRVLKPGRYCAILIGDTRRNKHHVPVSFRVMQ 240
Query: 124 WILNDIV 130
L +
Sbjct: 241 AFLEEGF 247
>gi|229073312|ref|ZP_04206462.1| Modification methylase [Bacillus cereus F65185]
gi|228709819|gb|EEL61843.1| Modification methylase [Bacillus cereus F65185]
Length = 421
Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 16/66 (24%)
Query: 1 MSQKNSLAINEN-------QNSIFEWKD---------KIIKGNSISVLEKLPAKSVDLIF 44
+ +++ + EN Q++ +K+ KII+G+++ L+ L +S+DLI
Sbjct: 185 IKEQDKIKNMENNILSEFLQSTKKNYKNLEVEKNNSKKIIQGDTLKELKTLNNESIDLIC 244
Query: 45 ADPPYN 50
PPY
Sbjct: 245 TSPPYG 250
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 40/127 (31%), Gaps = 4/127 (3%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDI--ILDPFFGSG 235
Q+ S +P + +I+ + G+I ILDPF GSG
Sbjct: 7 QLSSYGDTYWDFNKVTRSGIHKLANYPAMMVAPMQHKIIEDIVEIEGNISNILDPFHGSG 66
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQPLGNIELTVLTGKRTEPRVAFNLLV 294
T+ K IGI++ I ++ Q L L TE L
Sbjct: 67 TTLVEGNKFNLDLIGIDINPLANLITRVKLNGIDQGTILDSLAKLESNITEQLNTGIELF 126
Query: 295 ERGLIQP 301
I+
Sbjct: 127 NFNKIEK 133
>gi|54020146|ref|YP_115842.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
hyopneumoniae 232]
gi|53987319|gb|AAV27520.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
hyopneumoniae 232]
Length = 367
Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-LIPICSGSERLRNK-DGEKL 203
+N+ + + + ++ V ++ +G L++ + + +
Sbjct: 145 KNSRGDWVAKRKQYQYVKFNPKTKKIEQIEAGVPFKNIISDFYSLNGGLELKDIFNSKNI 204
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDY 257
KP L+ ++ ILD F GSGT+G L R F I Q+
Sbjct: 205 FDFPKPIELIKYLINIHPNKNAKILDFFAGSGTTGHAVWNLNRQDGGKRTFTLITNNQNK 264
Query: 258 I--DIATKRI-ASVQPLGNIELTVLTGKRTEPRVAF 290
I D+ +R+ G K +P +
Sbjct: 265 IATDVTYERLFRISNGKGTKNEEFNWSKNNKPYLEN 300
>gi|329943977|ref|ZP_08292246.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328531410|gb|EGF58252.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 99
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
HPT KP L++RIL +S PGD++LD F GSG+ A
Sbjct: 33 HPTMKPVELITRILTNSFPPGDLVLDLFGGSGSPLIAA 70
>gi|253999373|ref|YP_003051436.1| DNA methylase N-4/N-6 domain-containing protein [Methylovorus sp.
SIP3-4]
gi|253986052|gb|ACT50909.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
Length = 838
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
N+ + +G + +K G H ++ R++ + GD++ DPF G
Sbjct: 729 NDPDVWHDVNRMLTLNGDQ---SKRGLNNHICPLQIDIVDRLINRYSNKGDVVYDPFAGL 785
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYID 259
T A L R G E+ Y
Sbjct: 786 MTVPYRAVDLGRYGRGAELNSGYFK 810
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 7/61 (11%), Positives = 18/61 (29%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + + ++ SV LI P++ D + W + +
Sbjct: 477 TVVNNDCVDETARMEENSVGLIVTSIPFSNHYEYTPSYNDFGHTENNDQFWQQMDYLTPH 536
Query: 82 D 82
Sbjct: 537 L 537
>gi|71275849|ref|ZP_00652133.1| methyltransferase [Xylella fastidiosa Dixon]
gi|71899345|ref|ZP_00681505.1| methyltransferase [Xylella fastidiosa Ann-1]
gi|71163427|gb|EAO13145.1| methyltransferase [Xylella fastidiosa Dixon]
gi|71730859|gb|EAO32930.1| methyltransferase [Xylella fastidiosa Ann-1]
Length = 140
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM 253
+ T KP +L+ RIL +T +LD F GSGT+ KL R FI I
Sbjct: 1 MFNTPKPVSLIERILSVTTDKEAWVLDFFAGSGTTAHAVAKLNAEDGGHRRFILISN 57
>gi|291614396|ref|YP_003524553.1| DNA methylase N-4/N-6 domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584508|gb|ADE12166.1| DNA methylase N-4/N-6 domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 843
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+++ + +G++ RN + H ++ R++ + P +++ DPF G
Sbjct: 733 HDEAVWHDVNRMITLNGNQSQRNVE---KHVCPLQFDIVDRLIERYSNPDELVYDPFCGL 789
Query: 235 GTSGAVAKKLRRSFIGIEMKQDYI 258
GT A R G E+ Y
Sbjct: 790 GTVPYRAILKGRRGQGSELNSAYF 813
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 10/85 (11%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + ++ P VDL+ P+ D + W + F
Sbjct: 484 NNDCVIEAKRQPENHVDLMVTSIPFANHYEYTPSYNDFGHTENNDHFWQQMD-------F 536
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYH 109
R+LKP
Sbjct: 537 LTP---ELLRILKPGRMYCCHVKDR 558
>gi|296840789|ref|ZP_06899359.1| type III restriction-modification system StyLTI enzyme mod
[Neisseria polysaccharea ATCC 43768]
gi|296839951|gb|EFH23889.1| type III restriction-modification system StyLTI enzyme mod
[Neisseria polysaccharea ATCC 43768]
Length = 447
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
+++ +N + + ++ + + + D
Sbjct: 130 HTGEVITHPTNAWKFEHSKYLSYQEDNRLYWGK--NGENKYPRLKKFLTEMDGGMVPVDL 187
Query: 185 LIPICSG-----SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSG 238
+G S+ L + G+ + KP +L+ R+L ++ D IILD F GSGT+
Sbjct: 188 WKHDETGTTDAASKELESMIGKGIFTFPKPPSLIKRMLKIASNKKDSIILDFFTGSGTTA 247
Query: 239 AVAKK------LRRSFIGIEM 253
+ R +I +++
Sbjct: 248 HAVMQLNAEDGGNRRYICVQL 268
>gi|317486494|ref|ZP_07945319.1| hypothetical protein HMPREF0179_02677 [Bilophila wadsworthia 3_1_6]
gi|316922297|gb|EFV43558.1| hypothetical protein HMPREF0179_02677 [Bilophila wadsworthia 3_1_6]
Length = 367
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G + T P RIL + D++LDPF G GT+ A+ L + + ++ +
Sbjct: 10 NGLCPYFTMFPLEFPLRILKGRARKEDLVLDPFCGRGTTNFAARLLGLNSLAVDSSPVAV 69
Query: 259 DIATKRI 265
I ++
Sbjct: 70 AITAAKL 76
>gi|320162288|ref|YP_004175513.1| hypothetical protein ANT_28870 [Anaerolinea thermophila UNI-1]
gi|319996142|dbj|BAJ64913.1| hypothetical protein ANT_28870 [Anaerolinea thermophila UNI-1]
Length = 483
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
P + P L + + T+PG+I+LDP GSGT+ A R IG+++ + I+
Sbjct: 61 FPAKFPPQLPRLFIENLTQPGEIVLDPMAGSGTALLEACIAGRQAIGLDIDPLALRISY 119
>gi|332799808|ref|YP_004461307.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
sp. Re1]
gi|332697543|gb|AEE92000.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
Length = 849
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWD 73
II +S + L+ +P+ S+D IF DPP+ L L ++ +A+ +
Sbjct: 443 IINCSSSTDLKNIPSNSIDYIFTDPPFGANLMYSELNFLWEAWLKVFTNNESEAIINKT- 501
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
+ Y R+LKP + V
Sbjct: 502 QGKGLVEYQRIMERCFKEMHRILKPGRWMTV 532
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 196 RNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+N H T+ P + R ++ TKPGDI+ D F G+G +G A
Sbjct: 73 KNDPIYNAHSYHTKVPHKAIMRYILHYTKPGDIVFDGFCGTGMTGVAAAMC 123
>gi|325915047|ref|ZP_08177376.1| DNA methylase [Xanthomonas vesicatoria ATCC 35937]
gi|325538745|gb|EGD10412.1| DNA methylase [Xanthomonas vesicatoria ATCC 35937]
Length = 357
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ + ++PG+ + DPF G G++ A R+ G+E+ +A R+
Sbjct: 45 MRPFVRHFSQPGEQVFDPFCGFGSTLLAAALEGRNAHGMEIDPARAQLARTRLQRH 100
>gi|237750644|ref|ZP_04581124.1| DNA methyltransferase C1 [Helicobacter bilis ATCC 43879]
gi|229373734|gb|EEO24125.1| DNA methyltransferase C1 [Helicobacter bilis ATCC 43879]
Length = 359
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 40/99 (40%)
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
LR D +P + + + + +K GDI+LDPF GSGT+ ++ L+R
Sbjct: 1 MCKYDINLLRKLDRIHPYPAKFIIDMALHYISNYSKQGDIVLDPFCGSGTTLLASRILKR 60
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
+ IG ++ ++ +I L +
Sbjct: 61 NAIGFDINYIAYILSQSKILYFNVNDLKYLKEFQPDSSY 99
>gi|312601270|gb|ADQ90525.1| Site-specific DNA-methyltransferase [Mycoplasma hyopneumoniae 168]
Length = 367
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW-LIPICSGSERLRNK-DGEKL 203
+N+ + + + ++ V ++ +G L++ + + +
Sbjct: 145 KNSRGDWVAKRKQYQYVKFNPKTKKIEEIVAGVPFKNIISDFYSLNGGLELKDIFNSKNI 204
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS------FIGIEMKQDY 257
KP L+ ++ ILD F GSGT+G L R F I Q+
Sbjct: 205 FDFPKPIELIKYLINIHPNKNAKILDFFAGSGTTGHAVWNLNRQDGGKRTFTLITNNQNK 264
Query: 258 I--DIATKRI-ASVQPLGNIELTVLTGKRTEPRVAF 290
I D+ +R+ G K +P +
Sbjct: 265 IATDVTYERLFRISNGKGTKNEEFNWSKNNKPYLEN 300
>gi|120435233|ref|YP_860919.1| hypothetical protein GFO_0878 [Gramella forsetii KT0803]
gi|117577383|emb|CAL65852.1| hypothetical protein-possible methyltransferase [Gramella
forsetii KT0803]
Length = 100
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 3 QKNSLAINENQNSIFEW--KDKII-KGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+ N I++N+ FE K+ ++ GN ++ ++ + + +VDLI DPPYNL
Sbjct: 31 EDNFKIISKNKKIEFESIGKNTLLGNGNCVNYMKFIDSNTVDLILTDPPYNLGN 84
>gi|21226295|ref|NP_632217.1| type III restriction-modification system methylation subunit
[Methanosarcina mazei Go1]
gi|20904540|gb|AAM29889.1| type III restriction-modification system methylation subunit
[Methanosarcina mazei Go1]
Length = 1051
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I + L L + + I+ DPPYN + Y+ D++
Sbjct: 505 LMINSENWQALNLLLNKYTEQIKCIYIDPPYNTGKDKFPYK-------------DRYM-H 550
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ + + + + +L +G + + + +
Sbjct: 551 SCWLSLLSQTIQSSKGILTLDGIFFCSIDSNEAHNLKQVFNEYFGSDNYLADLIWDLGTG 610
Query: 139 NFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
G F +HE + + + K D
Sbjct: 611 TTAG-HFTRSHEYIYSYAKNKKMLDNFDYTD 640
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 12/147 (8%)
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWL-----IPICSGSERLRNKDGEKLHPTQKPE 210
+ K + FN + + ++ + G+ L+N E + KP
Sbjct: 728 TKGQKVTKFYFNKNGILCYEKEKSKINPKTVISKLTNTKEGTSTLKNVINEDIDLYPKPP 787
Query: 211 ALLSRILVSST-KPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYIDIATK 263
LL ++ + IILD F GSGT+ R +I IEM + +
Sbjct: 788 KLLEFLINLGSQDEASIILDFFAGSGTTAHAILNLNKEECGNRKYILIEMGDYFDSVLKP 847
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAF 290
RI + + + K + +
Sbjct: 848 RIKKIIYSKDWKDERPQSKDGQSHIFK 874
>gi|218661293|ref|ZP_03517223.1| putative DNA methylase protein [Rhizobium etli IE4771]
Length = 202
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P AL+S +L TK GD + DPF G GT+ V ++ R GIE + + +RI +
Sbjct: 12 FPGALVSALLDRFTKQGDAVFDPFVGLGTTFFVCEQRGRLPYGIEADRQRYEWVRERITA 71
Query: 268 VQ 269
Sbjct: 72 KH 73
>gi|312864447|ref|ZP_07724678.1| conserved domain protein [Streptococcus downei F0415]
gi|311099574|gb|EFQ57787.1| conserved domain protein [Streptococcus downei F0415]
Length = 127
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 17/72 (23%)
Query: 1 MSQKNSLAINEN----QNSIFEWKDKIIKGNSISVLEKL-----------PAKS--VDLI 43
+SQ + + EN + + +W +KII G+++ VL+ L + + L+
Sbjct: 56 ISQTFAAPLQENRRFGEATENDWFNKIIFGDNLQVLKTLVEMKHRGELKNADGTDGIRLV 115
Query: 44 FADPPYNLQLNG 55
+ DPP+ + +
Sbjct: 116 YIDPPFATKQDF 127
>gi|187929432|ref|YP_001899919.1| DNA methylase N-4/N-6 domain-containing protein [Ralstonia
pickettii 12J]
gi|187726322|gb|ACD27487.1| DNA methylase N-4/N-6 domain protein [Ralstonia pickettii 12J]
Length = 854
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 179 QMRSDWLIPICSGS-ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
M W + ++++ G++ H + R++ T PGD + DPF G +
Sbjct: 745 WMDDVWTDVARMRTLNMIQSQKGKEQHLCPMQFDIADRVIERFTNPGDTVYDPFGGIMSV 804
Query: 238 GAVAKKLRRSFIGIEMKQDYI 258
A + E+ Y
Sbjct: 805 PYRALLKGHKAVACELSTRYF 825
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ + + +P DLI P++ Q D TD+ + F Y
Sbjct: 493 RVVNNDCVEETANMPDNCHDLILTSIPFSTQYEYSPNYADF----GHTDNNEHFFQQMGY 548
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYH 109
R LKP +
Sbjct: 549 LTPH------LLRTLKPGRIAAIHVKDR 570
>gi|291237356|ref|XP_002738601.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 736
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ DG ++ QK +L + P +LD G+GT+ A R+ IG + +
Sbjct: 451 KDGDGVIVNSQQKHVQFFKTLLDKFSYPNQWVLDACCGTGTAIVAAMACGRNCIGFDTDR 510
Query: 256 DYIDIA 261
++ +
Sbjct: 511 RQVEHS 516
>gi|119383095|ref|YP_914151.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119372862|gb|ABL68455.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
PD1222]
Length = 881
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 10/177 (5%)
Query: 87 AWLLACRRVLKPNG-----TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
W + G Y T+L + D V++ N +
Sbjct: 673 EWDPEAKDWRNEGGYSRARWQIDAHGYMRSNGDRTLLPEELEGLDADQVYKV-WKAYNLQ 731
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
H + A TF +A+ DV +D + +E+ R G
Sbjct: 732 QVYDFEHHVRIGEALEKKGRLPPTFMLLPPHSAHPDVW--TDVARMMTINAEQAR--KGN 787
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
++H ++ R + T+ G+ + DPF G T A KL R IG+E+ + Y
Sbjct: 788 EMHLCPLQYDIVDRAIAQFTERGEWVYDPFGGLMTVPFRAVKLGRKGIGVELNKGYW 844
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 22/202 (10%), Positives = 47/202 (23%), Gaps = 16/202 (7%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ + ++ +P SV LI P++ Q P+++ D +
Sbjct: 501 VHNDCVAETRSMPDASVQLIVTSIPFSTQYEYS---PNYADFGHTDDD-------PHFWQ 550
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
+ RVL+P + I F R
Sbjct: 551 QMGFLIPELLRVLEPGRICAIHVKDRIIP-----GGINGFGFQTLSTLHMDCVREFQRHG 605
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
+T+ + Y + + + + + +G
Sbjct: 606 WAYLGMKTITTDVVRENNQTYRLGW-SEQCKDGSRMGCGVPEYLLIFRRPPSDTSNGYAD 664
Query: 204 HPTQKPEALLSRILVSSTKPGD 225
P +K + G
Sbjct: 665 RPVKKAKKEWDPEAKDWRNEGG 686
>gi|328952343|ref|YP_004369677.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
gi|328452667|gb|AEB08496.1| DNA methylase N-4/N-6 domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 424
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 32/84 (38%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
++ + +R + E + L + T+ G+++ DPF G GT+ A
Sbjct: 51 VYINEFWTAKQRAAHSLHEISYRACFKPQLPRFFIERLTRLGEVVYDPFMGRGTTLIEAA 110
Query: 243 KLRRSFIGIEMKQDYIDIATKRIA 266
R IG ++ + R+
Sbjct: 111 LWGRVPIGCDINPLSEILIRPRLN 134
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 33 EKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+P ++V L+ PP+ N Q + L + L + W + + +
Sbjct: 284 PAIPDQTVSLVVTSPPFLDIVNYQTDNWLRCWFNGLDASQVRIW-QVKRPLEWQERMQQV 342
Query: 89 LLACRRVLKPNGT 101
RVLKP G
Sbjct: 343 FAELNRVLKPGGH 355
>gi|207110506|ref|ZP_03244668.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
HPKX_438_CA4C1]
Length = 99
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 17/116 (14%)
Query: 36 PAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
+S+ I+ DPPYN + + Y Y+ + + L+ + V
Sbjct: 1 EKESIQTIYIDPPYNTKSSNFEYE----------------DDHADYEKWIKEHLILAKAV 44
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET 151
LK +G L++ + + + ++ N F N + + + HE
Sbjct: 45 LKQSGCLFISIDDNKMAEVK-IIANEIFGTRNFLGTFITKQATRSNAKHINITHEY 99
>gi|150020209|ref|YP_001305563.1| putative RNA methylase [Thermosipho melanesiensis BI429]
gi|149792730|gb|ABR30178.1| putative RNA methylase [Thermosipho melanesiensis BI429]
Length = 259
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S +R + K + + +++ + + ILDP GSGT+ AK L R
Sbjct: 13 WSFPKRGKWKTHNSRYRGNFAPQIPRNVILRYSNESETILDPMVGSGTTLIEAKILNRKS 72
Query: 249 IGIEMKQDYIDIATKRIASV 268
IG ++ + I++ + +
Sbjct: 73 IGYDINPESIELTKRNLNFE 92
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 19/169 (11%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
G++ + L ++ +++DLI PPY ++ + + D S + V +F
Sbjct: 104 GDARN-LYEIKNETIDLIITHPPYLNIIKYSSGKIKQDLSNISDVNKFILEFE------- 155
Query: 84 FTRAWLLACRRVLKPN-GTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ RVLK N +IG + + L + K + +
Sbjct: 156 ---KIVKELYRVLKENKYCAILIGDTRRKGHYIPLSFYVMKIFLKNRFVLKEDII----- 207
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
+ N T W K Y ++ L + + + I +G
Sbjct: 208 KIQHNCQSTPFWEKQVKKYNFYLIMHEHLFVFRKPKKDENLTHIKYSTG 256
>gi|57242413|ref|ZP_00370351.1| type II DNA modification methyltransferase [Campylobacter
upsaliensis RM3195]
gi|57016698|gb|EAL53481.1| type II DNA modification methyltransferase [Campylobacter
upsaliensis RM3195]
Length = 268
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
H QKP L + ++ TK G ++LDP G G S A R +GIE+ Q +IDI
Sbjct: 46 HGGQKPPQLCADLIQIFTKKGQLVLDPLCGVGGSLLGAALCDREALGIEINQQWIDI 102
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD----HSLVDAVTDSWDKFSSF 78
++ G++ L+++ +VD + D PY + + R S + D S
Sbjct: 117 VLLGDANDKLKEIDRNNVDFVLTDVPYWIMDKLEKTRSKSSIRGSKLTKFNDK--DLQSK 174
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
E + + + + LK NG + V
Sbjct: 175 EDWLSEMKQIFINVTPTLKDNGYMAVFIGD 204
>gi|166364158|ref|YP_001656431.1| hypothetical protein MAE_14170 [Microcystis aeruginosa NIES-843]
gi|166086531|dbj|BAG01239.1| hypothetical protein MAE_14170 [Microcystis aeruginosa NIES-843]
Length = 422
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G +P + ++ L + TK D I+DPF GSGT G AK +R+ + ++
Sbjct: 39 HGIYYYPAKFIPQVVRFCLDNYTKKDDWIIDPFAGSGTVGLEAKLCQRNAVLTDLNYLLN 98
Query: 259 DIATKRIASVQ 269
I +I Q
Sbjct: 99 HIIPIKITEHQ 109
>gi|217031477|ref|ZP_03436982.1| hypothetical protein HPB128_21g35 [Helicobacter pylori B128]
gi|216946677|gb|EEC25273.1| hypothetical protein HPB128_21g35 [Helicobacter pylori B128]
Length = 203
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 73 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 132
Query: 239 AVAKKLRRSFI 249
++ + +
Sbjct: 133 QAVIEVNKDYC 143
>gi|311748219|ref|ZP_07722004.1| putative type II R/M system [Algoriphagus sp. PR1]
gi|126576709|gb|EAZ80957.1| putative type II R/M system [Algoriphagus sp. PR1]
Length = 417
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 31/83 (37%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
M I + + P +L S + T GD++ DPF G GT+
Sbjct: 1 MNEVNYITPWANKRSNDPLHSLCSYLGSFPPSLASYFIRFFTDEGDLVYDPFSGRGTTIL 60
Query: 240 VAKKLRRSFIGIEMKQDYIDIAT 262
A+ L R + ++ + ++
Sbjct: 61 EARILNRKSVASDLNPIALALSH 83
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 33 EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLV-----DAVTDSWDKFSSFEAYDAFTRA 87
+KL VDLI PPY +N S + +++ D + + F++
Sbjct: 242 KKL-KGKVDLILTSPPYLGIVNYARQNWIRSWFLDANPELISEELDDDLNLFEWIKFSKD 300
Query: 88 WLLACRRVLKPNGT-LWVIGS 107
+ +++LKPNG ++VIG
Sbjct: 301 TVSQFKKLLKPNGVGVFVIGD 321
>gi|115289083|gb|ABI85558.1| M.Hin1056ModP-5 [Haemophilus influenzae]
Length = 283
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 20 KDKIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ IIKGN++ L L V LI+ DPPY +P S
Sbjct: 218 ENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYY----FVKKKPQDSFGYNTNFK----- 268
Query: 77 SFEAYDAFTRAWLLAC 92
+ F + LL
Sbjct: 269 -LSTWLTFMKNRLLIA 283
>gi|312792858|ref|YP_004025781.1| DNA methylase N-4/N-6 domain-containing protein
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179998|gb|ADQ40168.1| DNA methylase N-4/N-6 domain protein [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 860
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYD 82
L +P+ S+D IF DPPY L L ++ +A+ + + Y
Sbjct: 463 LNIIPSNSIDYIFIDPPYGDNLMYSELNFIWEAWLRVFTNNKTEAIINKV-QRKGLHEYQ 521
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHN 110
R+LKP W+ +HN
Sbjct: 522 ELMEQCFKEMYRILKPG--RWITVEFHN 547
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
+ ++ D + + P + +N H T+ P + R +
Sbjct: 37 CPNPFIKDFIERYGKKYDEEKDDYNVEPYTADISEGKNDPIYNAHSYHTKVPYKAIMRYI 96
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ TKPGDI+ D F GSG +G A
Sbjct: 97 LHYTKPGDIVFDGFCGSGMTGVAAAMC 123
>gi|51893399|ref|YP_076090.1| putative DNA modification methylase [Symbiobacterium thermophilum
IAM 14863]
gi|51857088|dbj|BAD41246.1| putative DNA modification methylase [Symbiobacterium thermophilum
IAM 14863]
Length = 395
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ T P +R ++ +PG+ +LDPF G GT+ A+ +GI+ + IA
Sbjct: 46 YFTMFPLDFPTR-YLAQARPGEWVLDPFCGRGTTNYAARLHGLPTVGIDSSPVAVAIA-- 102
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVA 289
R VQ + + P A
Sbjct: 103 RAKLVQVTPDELIAEAERILAGPEPA 128
>gi|317181568|dbj|BAJ59352.1| Type II DNA modification enzyme [Helicobacter pylori F57]
Length = 203
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
S G++ L + L T KP AL+ +L+ ST IILD F GSGT+
Sbjct: 73 NCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTA 132
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
++ + + + + + P L K T
Sbjct: 133 QAVIEVNKDYY---LNWSFYLCQKEEKIKNNPQAASVLKNKGYKNT 175
>gi|84616882|emb|CAJ13776.1| virulence associated protein [Desulfococcus multivorans]
Length = 933
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV--TDSWD------KFSSF 78
+ + +P S+D IF DPP+ + V + + + S
Sbjct: 497 DC---MRNMPDNSIDYIFTDPPFGHNFDYSELNFFWEAFLGVLTNQTQEAIVSSSQKKSV 553
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
E Y + RVLKP + V S
Sbjct: 554 EDYRHLMESCFREYYRVLKPGHWITVEFS 582
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLI--PICSGSERLRNKDGEKLHP--TQKPEALLSR 215
+ ++ A A + Q P + +N H T+ P + R
Sbjct: 77 CPNPWIADFIAEWEAQKPKQPEDYHYHREPFAADVSEGKNDPIYNAHSYHTKVPHKAIMR 136
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
++ T+PGDI+ D F G+G +G
Sbjct: 137 YILHYTQPGDIVFDGFCGTGMTGVAGALCG 166
>gi|256617065|ref|ZP_05473911.1| predicted protein [Enterococcus faecalis ATCC 4200]
gi|257088372|ref|ZP_05582733.1| predicted protein [Enterococcus faecalis D6]
gi|256596592|gb|EEU15768.1| predicted protein [Enterococcus faecalis ATCC 4200]
gi|256996402|gb|EEU83704.1| predicted protein [Enterococcus faecalis D6]
Length = 795
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
K LL R++++ T IILDPF GSG + ++ +R F GIE+ +
Sbjct: 39 KSPELLERVILALTGSDSIILDPFLGSGMTLIASQNAQRKFFGIELDNYTYSVDKTLFEK 98
Query: 268 VQPLGNIELTVLTGKRTEPRV----AFNLLVERGLIQPGQILTNAQG 310
V +L + RV E I+ +L + +
Sbjct: 99 VDSKELKKLFKQIEDSVKDRVMSLYETECDGETNYIKK--VLFDRKN 143
>gi|189219817|ref|YP_001940458.1| DNA modification methylase [Methylacidiphilum infernorum V4]
gi|189186675|gb|ACD83860.1| DNA modification methylase [Methylacidiphilum infernorum V4]
Length = 179
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I G++ +L ++ S+ L PPY + + SFE
Sbjct: 39 NEIYLGDARQLLPQIEPNSIALSVWSPPYFFGKKYEAHL-----------------SFED 81
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + + ++KP G L + + +FR
Sbjct: 82 WQNLLKTVIRLHYPIIKPGGFLVINIADILVFR 114
>gi|303250292|ref|ZP_07336491.1| hypothetical protein APP6_1706 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303250386|ref|ZP_07336584.1| hypothetical protein APP6_1801 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251501|ref|ZP_07337677.1| hypothetical protein APP6_0706 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252260|ref|ZP_07534157.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302649733|gb|EFL79913.1| hypothetical protein APP6_0706 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650712|gb|EFL80870.1| hypothetical protein APP6_1801 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650762|gb|EFL80919.1| hypothetical protein APP6_1706 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860182|gb|EFM92198.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 959
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 19/189 (10%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I ++ L L + V I+ DPPYN +A +
Sbjct: 401 LLIHSDNFQALNLLQERYKEQVKCIYIDPPYNT--------------NATPIIYKNGYKH 446
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNPM 137
++++ + ++ + + + +F +G + + I+ + NP
Sbjct: 447 SSWNSLLLNRMEMGLKLASSSAIQFTAIDHAELFNLGKIQDDLFTEQNRIAIIPIQHNPK 506
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ F E + + + + + + D R R
Sbjct: 507 GRNQAVFFSENCEYMFCYAKDITKASFNQVAIDREVL-DTFTEKDDIGRFRWENFVRART 565
Query: 198 KDGEKLHPT 206
+K P
Sbjct: 566 SWSKKNKPN 574
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 19/230 (8%)
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNG---TLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
D F+ + F + R + I ++ + ++ +L
Sbjct: 544 DTFTEKDDIGRFRWENFVRARTSWSKKNKPNNWYSIYVNEDLSELTLEKKDGYIEVLPVT 603
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ N + + K Y + N
Sbjct: 604 NQGEFTWKNIPSSFEELNVNGYFKAEKENGKVVVYHKYREQQVFKN---FWSQKKYQSEF 660
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK------K 243
+G+ L+ GE K + + + DIILD F GSGT+
Sbjct: 661 NGTNLLKAILGENPFSFPKSIYAVLDSIKIVSGKNDIILDYFAGSGTTAHAVINLNREDN 720
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
R +I +E +Y D ++P + K +P+
Sbjct: 721 GNRKYILVEQG-EYFDT------VLKPRVQKVIFAKEWKDGKPQSDNGAF 763
>gi|189218340|ref|YP_001938982.1| DNA modification methylase [Methylacidiphilum infernorum V4]
gi|189185198|gb|ACD82383.1| DNA modification methylase [Methylacidiphilum infernorum V4]
Length = 964
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 34 KLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
++P SVD IF DPP+ +N R + ++ + + Y
Sbjct: 531 QIPDNSVDFIFTDPPFGGNINYSEQNYLAEWWLRVFTNKINEAITNPAQKKGLFEYQQIM 590
Query: 86 RAWLLACRRVLKPNGTLWVIGSYHNI 111
RVLKP W++ +HN
Sbjct: 591 TRCFCEYYRVLKPG--RWMVMVFHNS 614
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
+ T+ P + L+ T+PGDI+LD F G+G +G
Sbjct: 170 AYHTKVPPKAIQHYLLHYTEPGDIVLDAFCGTGMTGVACL 209
>gi|225181260|ref|ZP_03734705.1| DNA methylase [Dethiobacter alkaliphilus AHT 1]
gi|225168040|gb|EEG76846.1| DNA methylase [Dethiobacter alkaliphilus AHT 1]
Length = 388
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA- 266
KPE L + +K GD++ DPF G GT+ A L RS + I I + +
Sbjct: 39 KPE-LPDYCIRKYSKAGDVVADPFCGRGTTALQANLLGRSAWVNDANPLAICITRAKCSP 97
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
P L + ++ + L+
Sbjct: 98 VSLPEIESFLGDINWQKKIDLQPDSDLLA 126
Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQL-YRPDHSLVDAVTDSWDKF 75
++ ++ ++ + L P SVDL+ PP+ N + L + + + +
Sbjct: 228 NRYLQSDARN-LSPWPDNSVDLVVTSPPFLNCVNYVHDNWLEHWFLNIDPSILKGRITQT 286
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTL 102
+S + +F LL R+L+ G
Sbjct: 287 ASIRVWKSFVAHVLLEIGRILRVGGIC 313
>gi|148265301|ref|YP_001232007.1| adenine-specific DNA methylase [Geobacter uraniireducens Rf4]
gi|146398801|gb|ABQ27434.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Geobacter uraniireducens Rf4]
Length = 596
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KP + S+ + +K G+++LDPF GSG + A +R +G ++ + + IA
Sbjct: 69 KKPANVFSKCISFFSKEGELVLDPFCGSGITVVEAIIEKRKAVGFDLNPFAVYLTETLIA 128
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 20/122 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY--------------NLQLNGQLYR 59
++ W +I +S L SVD I DPPY NL L
Sbjct: 331 DNAANWGKVLIH-DSRKKFASLQDNSVDYILTDPPYGGEGIQYGELSMLWNLWLGFHEDL 389
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ + S Y A + R+LKP + V + +I +++
Sbjct: 390 DAEVAFNPYRNK-----SEVDYAAGLKKVFAEAYRLLKPGRWMSVTFNNKDIKVWNSLIS 444
Query: 120 NL 121
Sbjct: 445 AC 446
>gi|163846563|ref|YP_001634607.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222524354|ref|YP_002568825.1| DNA methylase N-4/N-6 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163667852|gb|ABY34218.1| DNA methylase N-4/N-6 domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222448233|gb|ACM52499.1| DNA methylase N-4/N-6 domain protein [Chloroflexus sp. Y-400-fl]
Length = 368
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
AH L S + + D ++ D L ER +DG +H
Sbjct: 90 RAHYYLNRLQRSLDGPRFAPDSDIDLRRWKE---YDDILTDSLWLIER---RDGSGVHRA 143
Query: 207 ----QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ + + T+PG+ +LDPF GSGT+ A++L R+ IG+E++ +
Sbjct: 144 DYWGNFVPQIPHQFIRRYTRPGEWVLDPFAGSGTTLIEARRLGRNAIGVELQPAMV 199
>gi|172039169|ref|YP_001805670.1| CHP95-containing protein [Cyanothece sp. ATCC 51142]
gi|171700623|gb|ACB53604.1| CHP95-containing protein [Cyanothece sp. ATCC 51142]
Length = 182
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
++IKG+S+ VL+ L K DLI+ DPPY
Sbjct: 91 QVIKGDSLKVLKTLDRKKFDLIYFDPPY 118
>gi|325923712|ref|ZP_08185331.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
gi|325545798|gb|EGD17033.1| DNA modification methylase [Xanthomonas gardneri ATCC 19865]
Length = 354
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ + + PG+ + DPF G G++ A R+ G+E+ +A R+
Sbjct: 42 MRPFVRHFSAPGEQVFDPFCGFGSTLLAAAMEGRNAHGMEIDPARAHLARTRLQRH 97
>gi|197286959|ref|YP_002152831.1| DNA modification methyltransferase [Proteus mirabilis HI4320]
gi|194684446|emb|CAR46179.1| DNA modification methyltransferase [Proteus mirabilis HI4320]
Length = 511
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 196 RNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ +HP +KP + ++ + PGD+++DPF GSGTS A KL R IG ++
Sbjct: 18 HDYPAGLIHPYWARKPINITELLVEKLSNPGDLVVDPFMGSGTSLIAALKLNRRTIGSDL 77
Query: 254 KQ 255
Sbjct: 78 SP 79
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 13/97 (13%)
Query: 34 KLPAKSVDLIFADPP-------------YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
L +VDLI DPP Y ++ + T++ +
Sbjct: 315 ALEDSTVDLIITDPPYADHAPYLEYSDFYWSIIDETRTKDLWKFEIVKTNAVGRNIDSND 374
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
YD + + LK +G NI T+
Sbjct: 375 YDIRMMNSFKSILKGLKDDGYFAFFYLDKNIKHWKTI 411
>gi|209547699|ref|YP_002279616.1| DNA methylase protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209533455|gb|ACI53390.1| putative DNA methylase protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 217
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P AL+S +L TK GD + DPF G GT+ V ++ R G E + + +RI +
Sbjct: 28 FPGALVSALLDRFTKSGDAVFDPFVGLGTTFFVCEQRGRIPYGTEADRQRYEWVKQRITT 87
Query: 268 VQ 269
Sbjct: 88 KH 89
>gi|317153366|ref|YP_004121414.1| DNA methylase N-4/N-6 domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316943617|gb|ADU62668.1| DNA methylase N-4/N-6 domain protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 934
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 54/152 (35%), Gaps = 5/152 (3%)
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN-AHETLIWA 155
K + + N L D +RK PN N + A
Sbjct: 15 KSGPVKCLGREFENDEARRAHFIEELRKKLQDPEFRKIEGFPNGSDEDILNLSDPPYYTA 74
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALL 213
P+P + ++ALK D S P + + K HP T+ P +
Sbjct: 75 CPNPWIGHFIAEWEALKPKKPDNY--SYHREPFAADVSEGKYDPIYKYHPYPTKVPHKAI 132
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
R ++ TKPGDI+ D F G+G +G A+
Sbjct: 133 MRYILHYTKPGDIVFDGFCGTGMTGVAAQMCG 164
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 31 VLEKLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAY 81
L +P S+ IF DPP+ L L ++ +A+ + + + Y
Sbjct: 495 WLPSIPDNSLSYIFIDPPFGANLYYSELAFLWETWLRILTNNKEEAIEND-AQGKGLDDY 553
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS 107
+ R LKP + + S
Sbjct: 554 RLLMQKCFSEAYRALKPGRWMTIEFS 579
>gi|224438797|ref|ZP_03659652.1| putative methyltransferase cytosine (N4) specific (C1-like) protein
[Helicobacter cinaedi CCUG 18818]
gi|313145139|ref|ZP_07807332.1| DNA methyltransferase C1 [Helicobacter cinaedi CCUG 18818]
gi|313130170|gb|EFR47787.1| DNA methyltransferase C1 [Helicobacter cinaedi CCUG 18818]
Length = 359
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 41/99 (41%)
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
LR D +P + + + + +K GDI+LDPF GSGT+ ++ L+R
Sbjct: 1 MCKYDINLLRKLDRIHPYPAKFIIDIALHYISNYSKQGDIVLDPFCGSGTTLLASRILKR 60
Query: 247 SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
+ IG ++ ++ +I + L +
Sbjct: 61 NAIGFDINYIAYILSQSKILYLNVNDLKYLKEFQPDSSY 99
>gi|284097548|ref|ZP_06385617.1| DNA methyl transferase [Candidatus Poribacteria sp. WGA-A3]
gi|283830942|gb|EFC34983.1| DNA methyl transferase [Candidatus Poribacteria sp. WGA-A3]
Length = 84
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 22/92 (23%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
++I N I ++ + + +DL+ PPY+ + YR
Sbjct: 3 LNEIRNENCIDTMKMMSDEFIDLVVTSPPYDKMREYEGYR-------------------- 42
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ RV+K G + + I
Sbjct: 43 --LKAFEQIAIELYRVVKDGGVVVWVIGDQTI 72
>gi|188575175|ref|YP_001912104.1| hypothetical protein PXO_04295 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188519627|gb|ACD57572.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 377
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ + ++PG+ + DPF G G++ A R+ G+E+ +A R+ +
Sbjct: 253 MRPFVRHFSRPGEQVFDPFCGFGSTLPAAALEGRNAHGMEIDPARAQLARARLQQHAAVA 312
Query: 273 NI 274
Sbjct: 313 PS 314
>gi|163783520|ref|ZP_02178510.1| probable methylation subunit, type III restriction-modification
system [Hydrogenivirga sp. 128-5-R1-1]
gi|159881140|gb|EDP74654.1| probable methylation subunit, type III restriction-modification
system [Hydrogenivirga sp. 128-5-R1-1]
Length = 1108
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 26/178 (14%)
Query: 14 NSIFEWKDK----IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
++I + +DK +IK + L L V I+ DPPYN + + LY+
Sbjct: 538 SAIDDLEDKVRGVLIKSENFQALRFLEPKYRGKVKTIYIDPPYNAKSSEILYKNTFK--- 594
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLK-PNGTLWVIGSYHNIFRIGTMLQNLNFWI 125
++ + L + L+ +G V + R+G +++ L
Sbjct: 595 -----------HSSWLSLMENRLALGKEFLREEDGVFVVAIDENEQERLGLLIEELFPEY 643
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+V + N G + +N T +A KG + + DV+ +
Sbjct: 644 KKTMVAV----VHNPSGIQGENFRYTNDFAYFIYPDKGRIMHPEERSEDEADVRQFMN 697
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLS 214
+ + K K N + G+E ++N G K +
Sbjct: 779 YAKYDERKKKWVIMRTKKLINYATIWDNKKYNAKKYGTELIKN-MGTDEFKFPKSVWTVH 837
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
+ S+ P +ILD F GSGT+ L
Sbjct: 838 DSIKISSNPDSLILDFFAGSGTTAHAVALLNTK 870
>gi|45657203|ref|YP_001289.1| methyltransferase DNA modification enzyme [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|45600441|gb|AAS69926.1| methyltransferase DNA modification enzyme [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 383
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 4/138 (2%)
Query: 32 LEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LE L +VDL+ PP+ N + + L + FS+ A+ F
Sbjct: 240 LESLQDGTVDLVITSPPFLDKVNYEEDNWLRYWFLDIKLPDHKKPSIFSTLNAWTDFIHD 299
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L RVLKP G + L + N + +
Sbjct: 300 TLKELSRVLKPEGICVMEVGDIKKGPTVFNLDEYVIQAASGSGLEWETTFINDQKFTKLS 359
Query: 148 AHETLIWASPSPKAKGYT 165
+ +
Sbjct: 360 NCWNVSNNEKGTNSNRCV 377
>gi|207110396|ref|ZP_03244558.1| adenine specific DNA methyltransferase (mod) [Helicobacter pylori
HPKX_438_CA4C1]
Length = 67
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+ L T KP AL+ +L+ ST IILD F GSGT+ ++ + + + +
Sbjct: 5 KGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEVNKDYC---LNWSFYLC 61
Query: 261 ATKRIA 266
+R
Sbjct: 62 QKERKN 67
>gi|159030772|emb|CAO88450.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 422
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+P + ++ L + TK D I+DPF GSGT G AK +R+ + ++ I
Sbjct: 44 YPAKFIPQVVRFCLDNYTKKDDWIIDPFAGSGTVGLEAKLCQRNAVLTDLNYLLNHIIPI 103
Query: 264 RIASVQ 269
+I Q
Sbjct: 104 KITEHQ 109
>gi|58428161|gb|AAW77198.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 508
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + ++PG+ + DPF G G++ A R+ G+E+ +A R+
Sbjct: 282 MRPFVRHFSRPGEQVFDPFCGFGSTLPAAALEGRNAHGMEIDPARAQLARARLQQHA 338
>gi|84625379|ref|YP_452751.1| hypothetical protein XOO_3722 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84369319|dbj|BAE70477.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 480
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + ++PG+ + DPF G G++ A R+ G+E+ +A R+
Sbjct: 254 MRPFVRHFSRPGEQVFDPFCGFGSTLPAAALEGRNAHGMEIDPARAQLARARLQQHA 310
>gi|324010283|gb|EGB79502.1| hypothetical protein HMPREF9533_05738 [Escherichia coli MS 60-1]
Length = 63
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
I+LDPF GSG++ A + R +IGIE+ + Y +R+ +VQ
Sbjct: 2 IVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLTAVQRAMQQ 50
>gi|126451812|ref|YP_001067898.1| DNA methylase [Burkholderia pseudomallei 1106a]
gi|242316235|ref|ZP_04815251.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
1106b]
gi|126225454|gb|ABN88994.1| DNA methylase [Burkholderia pseudomallei 1106a]
gi|242139474|gb|EES25876.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
1106b]
Length = 138
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K H T+KP + ++ G ++ D F GSGT A A++ ++G E Q Y I+
Sbjct: 62 KQHVTEKPLDIAREVVRLV-PAGGVVCDLFAGSGTFLAAAREAGLHWVGSESNQAYHAIS 120
Query: 262 TKRIA 266
+ R+
Sbjct: 121 SARLD 125
>gi|125974022|ref|YP_001037932.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
gi|281418176|ref|ZP_06249196.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
JW20]
gi|125714247|gb|ABN52739.1| DNA methylase N-4/N-6 [Clostridium thermocellum ATCC 27405]
gi|281409578|gb|EFB39836.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum
JW20]
Length = 329
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
T+ S N + + N + + S +R +
Sbjct: 70 TICLEEKSKSYFADKLNIKSWEPEN-----FNLETTTVWSFPDRGDWATHSGKYRGNWSP 124
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
+ +++ +K G+ +LD F GSGT+ AK L+R IG+++ + +++ + I +
Sbjct: 125 FIPRNVILRYSKEGETVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVNLTCRNINFEKE 184
Query: 271 LGNI 274
Sbjct: 185 DCGE 188
Score = 42.7 bits (99), Expect = 0.095, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 14/107 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G++ L + +SVDLI PPY N+ + D S D +
Sbjct: 191 VHVGDARH-LGFIKDESVDLICTHPPYSNIIKYSEDIEGDLSHCD-----------INEF 238
Query: 82 DAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILN 127
RVLK +IG + + N+ L
Sbjct: 239 LVEMEKVAKESYRVLKKGRFCAILIGDTRRKGHMIPIGFNVMQTFLR 285
>gi|316984047|gb|EFV63025.1| type III restriction-modification system EcoPI enzyme mod domain
protein [Neisseria meningitidis H44/76]
Length = 68
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPP 48
+ +I+G+++ VL+ L SV +I+ DPP
Sbjct: 38 NLLIRGDNLEVLKHLKNAYTNSVKMIYIDPP 68
>gi|256004638|ref|ZP_05429615.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
2360]
gi|255991373|gb|EEU01478.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
2360]
gi|316941270|gb|ADU75304.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
1313]
Length = 329
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
T+ S N + + N + + S +R +
Sbjct: 70 TICLEEKSKSYFADKLNIKSWEPEN-----FNLETTTVWSFPDRGDWATHSGKYRGNWSP 124
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
+ +++ +K G+ +LD F GSGT+ AK L+R IG+++ + +++ + I +
Sbjct: 125 FIPRNVILRYSKEGETVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVNLTCRNINFEKE 184
Query: 271 LGNI 274
Sbjct: 185 DCGE 188
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 14/107 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ G++ L + +S+DLI PPY N+ + D S D +
Sbjct: 191 VHVGDARH-LGFIKDESIDLICTHPPYSNIIKYSEDIEGDLSHCD-----------INEF 238
Query: 82 DAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILN 127
RVLK +IG + + N+ L
Sbjct: 239 LVEMEKVAKESYRVLKKGRFCAILIGDTRRKGHMIPIGFNVMQTFLR 285
>gi|207111270|ref|ZP_03245432.1| type II DNA modification (methyltransferase [Helicobacter pylori
HPKX_438_CA4C1]
Length = 57
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
+S+D I+ DPP+N + DKF + + L L
Sbjct: 6 KESIDCIYIDPPFNTGSDFAYI--------------DKFQD-STWLSLIHNRLELAYDFL 50
Query: 97 KPNGTLW 103
P G+ +
Sbjct: 51 SPQGSFY 57
>gi|85720925|gb|ABC75875.1| M2.BtsI [Geobacillus thermoglucosidasius]
Length = 393
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ + + + T+PGD ILDP+ GSGT+ A L R IGI++ + IA
Sbjct: 37 YSGKFIPQIAKSAIELLTQPGDTILDPYMGSGTTLVEAVLLNRFSIGIDLNPLAVLIAQA 96
Query: 264 RIASVQPLGNIELTVLTGK 282
++ ++ L
Sbjct: 97 KVTPIEREKLDFLITTFTD 115
>gi|319795057|ref|YP_004156697.1| DNA methylase n-4/n-6 domain protein [Variovorax paradoxus EPS]
gi|315597520|gb|ADU38586.1| DNA methylase N-4/N-6 domain protein [Variovorax paradoxus EPS]
Length = 346
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ ++PGD + DPF G GT+ A+ R G E+ D I + +R+A
Sbjct: 42 FVRQFSQPGDTVFDPFAGFGTTLLAARLEGRLASGCEVDADRIGLIRERLARH 94
>gi|225390494|ref|ZP_03760218.1| hypothetical protein CLOSTASPAR_04249 [Clostridium asparagiforme
DSM 15981]
gi|225043445|gb|EEG53691.1| hypothetical protein CLOSTASPAR_04249 [Clostridium asparagiforme
DSM 15981]
Length = 174
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+LDPF GSGT+ AK L R+++GI+ + + +R+
Sbjct: 1 MLDPFCGSGTTLVAAKLLGRNYVGIDRNPSAVRLCGQRLE 40
>gi|323184000|gb|EFZ69382.1| hemagglutinin-associated protein [Escherichia coli 1357]
Length = 145
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
+ P +VD I DPPY + D + + + D + +
Sbjct: 1 MATFPGNAVDFILTDPPY---------------LVGFRDRQGRTIAGDKTDEWLQPACNE 45
Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
RVLK + + ++ + R +N F
Sbjct: 46 MYRVLKKDALMVSFYGWNRVDRFMAAWKNAGF 77
>gi|158318454|ref|YP_001510962.1| putative RNA methylase [Frankia sp. EAN1pec]
gi|158113859|gb|ABW16056.1| putative RNA methylase [Frankia sp. EAN1pec]
Length = 292
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
HP + AL I+ + T+PGD+++DP G GT+ A L R +G+E + +
Sbjct: 34 AHPARMLPALARHIITTFTEPGDLVVDPMCGIGTTLVEAAHLGRRALGVEYEPRW 88
>gi|319757916|gb|ADV69858.1| putative modification enzyme of type III restriction-modification
system [Streptococcus suis JS14]
Length = 429
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFI 249
+ DG+ KP L+ +I+ ++ +ILD F GS T+ + R +I
Sbjct: 187 KLFDGKAYFTYPKPVPLMKQIVQLYSEKDGLILDFFAGSATTADAVMQLNAEDGGNRKYI 246
Query: 250 GIEMKQD 256
+ +
Sbjct: 247 LCTLDEQ 253
>gi|146318337|ref|YP_001198049.1| modification enzyme of type III restriction-modification system
[Streptococcus suis 05ZYH33]
gi|146320531|ref|YP_001200242.1| modification enzyme of type III restriction-modification system
[Streptococcus suis 98HAH33]
gi|145689143|gb|ABP89649.1| putative modification enzyme of type III restriction-modification
system [Streptococcus suis 05ZYH33]
gi|145691337|gb|ABP91842.1| putative modification enzyme of type III restriction-modification
system [Streptococcus suis 98HAH33]
gi|292558130|gb|ADE31131.1| putative modification enzyme of type III restriction-modification
system [Streptococcus suis GZ1]
Length = 429
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFI 249
+ DG+ KP L+ +I+ ++ +ILD F GS T+ + R +I
Sbjct: 187 KLFDGKAYFTYPKPVPLMKQIVQLYSEKDGLILDFFAGSATTADAVMQLNAEDGGNRKYI 246
Query: 250 GIEMKQD 256
+ +
Sbjct: 247 LCTLDEQ 253
>gi|118593982|ref|ZP_01551334.1| DNA methyltransferase SptAIM; protects DNA against PvuII
endonuclease [Stappia aggregata IAM 12614]
gi|118433432|gb|EAV40107.1| DNA methyltransferase SptAIM; protects DNA against PvuII
endonuclease [Stappia aggregata IAM 12614]
Length = 77
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
KI +S+ V+E++ SV+LI PP+ L
Sbjct: 18 KIFHADSLEVMERMDDASVNLIMTSPPFALTRKKD 52
>gi|289192376|ref|YP_003458317.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938826|gb|ADC69581.1| DNA methylase N-4/N-6 domain protein [Methanocaldococcus sp.
FS406-22]
Length = 823
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 14 NSIFEWKDKI-IKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHS 63
NS + +KI I S + L +P S+D IF DPP+ N L ++
Sbjct: 408 NSYPKINNKIYITTQSSTDLRNIPDNSIDYIFVDPPFGDNLMYSELNFIWESWLRVFTNN 467
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+A+ + + Y R+LKPN W+ +HN
Sbjct: 468 KPEAIINET-QNKDVYEYKELMYQCFKEMYRILKPN--RWITIEFHNS 512
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 161 AKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH--PTQKPEALLSRILV 218
Y ++ + D + P S +N H T+ P + + +
Sbjct: 39 PNPYIEDFIKEFGKSYDAENDDYQKTPYVSDVSEGKNDPIYNAHTYHTKVPYKAIMKFIK 98
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
T+PGDI+ D F GSG +G A R I ++ IA
Sbjct: 99 HYTEPGDIVFDGFCGSGMTGVAALMTGRHAILNDLSPVATFIAYN 143
>gi|229141872|ref|ZP_04270399.1| Adenine specific DNA methylase Mod-like protein [Bacillus cereus
BDRD-ST26]
gi|228641628|gb|EEK97932.1| Adenine specific DNA methylase Mod-like protein [Bacillus cereus
BDRD-ST26]
Length = 415
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 20/231 (8%)
Query: 56 QLYRPDHSLV-DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF-- 112
+ + D+ D D K+ + D + ++ + L+ +G ++ G
Sbjct: 2 EEHIDDNYKYEDEFVDERGKYKLNQTLDYDSLSYSKSLDYPLEIDGEIFYPGGSKEKHLE 61
Query: 113 -----RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + + + + + K K
Sbjct: 62 RQSGKHKRADWAWRWNKEMFKYGYENGFVVIKRKKDGTARIYTKTYLNAKIEKRKSKGMT 121
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNK----DGEKLHPTQKPEALLSRILVSSTKP 223
+K ++ + S L ++ + + + KP L+ R++ P
Sbjct: 122 EYFIKYVHKTKPLSSIELTLNKYSNDNAKKDLSVFNLQDEFDYSKPVDLIKRLISCHYNP 181
Query: 224 GDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRIA 266
+LD F GSGT+G + R FI Q+ I +I KR++
Sbjct: 182 DAYVLDFFAGSGTTGQAILELNKERGGNRKFILCTNNQNNICREITYKRVS 232
>gi|146328664|ref|YP_001209666.1| hypothetical protein DNO_0762 [Dichelobacter nodosus VCS1703A]
gi|146232134|gb|ABQ13112.1| hypothetical protein DNO_0762 [Dichelobacter nodosus VCS1703A]
Length = 187
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 47/228 (20%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+IF DPP+++ + +
Sbjct: 1 MIFTDPPFDMGAGKLHKILSNYQFE----------------------------------H 26
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
L +I S + + L + D+V +S P + H + +
Sbjct: 27 LVLIASMRQVLELYPKLDMDFCF---DLVANRSKPKESRSYAMPHYLHNNIFYFKKHGVK 83
Query: 162 KGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST 221
+ A D + + ++ QK + ++ I+ +
Sbjct: 84 SAFDRRLVARADQYSDTKTHYYPTFFDAP--------KRDIVYRYQKNQQMIDDIIGAFN 135
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ D F GSGT+G K + IE + + +I +++ +Q
Sbjct: 136 V--STVCDMFAGSGTTGLACVKHEKDCTLIEAETEPFNIMKQQLDFLQ 181
>gi|294627629|ref|ZP_06706211.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292597981|gb|EFF42136.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 354
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + ++PG+ + DPF G G+S A R+ G+E+ +A R+
Sbjct: 42 MRPFVRHFSRPGEQVFDPFCGFGSSLLAAALEGRNAHGMEIDPARAQLARARLQRHA 98
>gi|308062651|gb|ADO04539.1| type IIS restriction enzyme M1 protein (mod) [Helicobacter pylori
Cuz20]
Length = 46
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+KI + + L+KL KSVDL DPPYNL++ +
Sbjct: 2 ILNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIASWDSFKND 45
>gi|223038997|ref|ZP_03609288.1| DNA methylase N-4/N-6 domain protein [Campylobacter rectus RM3267]
gi|222879636|gb|EEF14726.1| DNA methylase N-4/N-6 domain protein [Campylobacter rectus RM3267]
Length = 260
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 42/93 (45%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + + +ER ++ + ++ + +++L TK G+ + +PF GSGT
Sbjct: 10 DWKNCDINTDSLWFIAERDKSGKHKNIYHGNFIPQIPNQLLRRYTKRGEFVFEPFMGSGT 69
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + L R +IG ++ +D + + +
Sbjct: 70 TLFECENLDRKYIGFDINPLMLDYVRQSMQNSN 102
>gi|213022570|ref|ZP_03337017.1| type III restriction-modification system StyLTI enzyme mod
[Salmonella enterica subsp. enterica serovar Typhi str.
404ty]
Length = 136
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 17/131 (12%)
Query: 44 FADPPYNLQLNGQLYRPDHSLVD--------AVTDSW-------DKFSSFEAYDAFTRAW 88
+ DPPYN +G +Y PDH + D+ S+ A+ +F
Sbjct: 1 YIDPPYNTGSDGFVY-PDHFEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPR 59
Query: 89 LLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L R++LK G +++ + + M+ V K +
Sbjct: 60 LFLARKLLKDTGFIFISIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSI 119
Query: 148 AHETLIWASPS 158
T ++
Sbjct: 120 QGNTFLFTPKP 130
>gi|91204080|emb|CAJ71733.1| similar to DNA-methyltransferase (cytosine-specific) [Candidatus
Kuenenia stuttgartiensis]
Length = 437
Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 16/193 (8%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ G + + + + + ++ N +
Sbjct: 31 IQYGRIKKIGDNGTVQVSRQDLINYYKSFNGKREVSWKDQLGNDLNWALSFDQYKEAETT 90
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSST---------KPGDIILDPFFGSGTSGAV 240
RL G+ L+ L T K GDIILDPF GSGT+
Sbjct: 91 KHVHRLHPYKGK------FIPQLVEYFLDDHTDNFKTEIYFKKGDIILDPFSGSGTTMVQ 144
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ 300
+L IGI++ IA ++ + K + + + +E +
Sbjct: 145 CCELGMHAIGIDVSAFNALIANCKVTKYNLINVQTEINRITKALKEFLFNSQTLEF-EEK 203
Query: 301 PGQILTNAQGNIS 313
Q L
Sbjct: 204 LLQALYEYNNKYF 216
>gi|169786876|ref|YP_001705689.1| putative methyltransferase cytosine (N4) specific (C1-like)
[Acinetobacter baumannii SDF]
gi|169150793|emb|CAP02987.1| putative methyltransferase Cytosine (N4) specific (C1-like)
[Acinetobacter baumannii]
Length = 390
Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSSTKPGDI 226
++ +D+ ++S S + R + E LHP L ++ + G
Sbjct: 12 ESNCNLVKDLDIKSQLNNIDWSFANREKAHPIESLHPYPAKFIGELPRSLIKTFNN-GLP 70
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+LDPF GSGT+ A++L +GI++ I
Sbjct: 71 VLDPFAGSGTTLMEAQRLGLEAVGIDLNPIACLIT 105
>gi|224437468|ref|ZP_03658430.1| hypothetical protein HcinC1_05825 [Helicobacter cinaedi CCUG
18818]
Length = 73
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 13 QNSIFEWKDK-IIKGNSISVLEK-LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
N+ F +K+ + + + L S+DLI PPYN+ + +
Sbjct: 6 HNTSFSYKNTTLFNHTCLD--KTILQENSLDLIITSPPYNVGIEYNSNEDSN-------- 55
Query: 71 SWDKFSSFEAYDAFTRAWLLACR 93
S+E+Y F++ W+ C
Sbjct: 56 ------SYESYLEFSQKWIGNCY 72
>gi|156743531|ref|YP_001433660.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156234859|gb|ABU59642.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 372
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFG 233
N + + R + ++++ T+ GD++LDPF G
Sbjct: 119 LNRWKEYDDVLTDSLWLFDRRAAGGAHHAGFWGNFVPQIPYQLMLRYTRRGDLVLDPFAG 178
Query: 234 SGTSGAVAKKLRRSFIGIEMKQ 255
SGT+ A++L R IG+E+
Sbjct: 179 SGTTLIEAQRLGRLAIGVELNP 200
>gi|300313855|ref|YP_003777947.1| hypothetical protein Hsero_4573 [Herbaspirillum seropedicae SmR1]
gi|300076640|gb|ADJ66039.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
Length = 386
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + P +LDPF G G++ A R+ IGIE+ + + +R+ +
Sbjct: 36 VEQMQPFIAHLCPPEGRVLDPFCGFGSTLVAAHSQGRAGIGIEVDGSRVALTRQRLQRLS 95
Query: 270 PLGNI 274
P
Sbjct: 96 PEAAE 100
>gi|269213597|ref|ZP_06158065.1| type III restriction-modification system methylation subunit
[Neisseria cinerea ATCC 14685]
gi|269146069|gb|EEZ72487.1| type III restriction-modification system methylation subunit
[Neisseria cinerea ATCC 14685]
Length = 613
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 19/156 (12%)
Query: 7 LAINENQNSIFEWKD-KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDH 62
LA N + + E D +I ++ L L A V I+ DPPYN
Sbjct: 35 LAALSNDHDLDEATDGLLIHSDNFQALNLLQARYRGQVKCIYIDPPYNT----------- 83
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM-LQNL 121
DA + ++ + + + + + + +F +G +
Sbjct: 84 ---DASPIIYKNGYKHSSWASLIQDRINLGLNLANQTAIQFTAIDHAELFNLGKIEDSIF 140
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
I+ + NP + F E ++ +
Sbjct: 141 KEENRIAIIPIQHNPKGRNQAVFFSENCEYMLCYAK 176
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 51/202 (25%), Gaps = 7/202 (3%)
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK---PNGTLWVI 105
Y L + R + V + D F + F + R + I
Sbjct: 170 YMLCYAKDISRASFNQVAIDKEVLDTFIEQDNVGRFRYENFIRARTSWSRKNKPNNWYPI 229
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
++ + + + + N S K Y
Sbjct: 230 YVSPDLKHLTLEETSGYHKVYPTTNQGEFTWKNIPSSFIELNKDNYFKAVSEEGKIVIYH 289
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG-EKLHPTQKPEALLSRILVSSTKPG 224
+ N +G+ L+N G K + + +
Sbjct: 290 KYREQQVFKN---FWSQKKYQSEFNGTNLLKNILGFASSFSFPKSIYAVLDSIKIVSSKT 346
Query: 225 DIILDPFFGSGTSGAVAKKLRR 246
D+ILD F GSGT+ L R
Sbjct: 347 DLILDYFAGSGTTAHAVINLNR 368
>gi|315644996|ref|ZP_07898123.1| hypothetical protein PVOR_05755 [Paenibacillus vortex V453]
gi|315279629|gb|EFU42932.1| hypothetical protein PVOR_05755 [Paenibacillus vortex V453]
Length = 390
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 8/162 (4%)
Query: 21 DKIIKGNSI--SVLEKLPAK-SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+++ G++ + L L+ DPPYN+ + R +
Sbjct: 204 HRLVCGDATDPEDVALLMDGAKAALVVTDPPYNVAVVSDSERL---AANGHDSIMSDDMP 260
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E + F A + ++ ++V S + + + VW K+
Sbjct: 261 AEEFAGFLHAVFQSYGSIMDQAAAIYVFHSSSYQREFEDAMNASGIVVRSQCVWVKNAAS 320
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ +++ HE + +A KA + + +
Sbjct: 321 FGWS--QYRWQHEPIFYAHKRGKAPAWYGDRRQSTVWRAGLP 360
>gi|86153960|ref|ZP_01072162.1| DNA adenine modification methylase [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|85842498|gb|EAQ59711.1| DNA adenine modification methylase [Campylobacter jejuni subsp.
jejuni HB93-13]
Length = 265
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAV 240
+ + R ++ ++ + ++++ TK D+I+DPF GSGT+
Sbjct: 14 CDINTDSLWLIASRDKSGKHRNIYHGNFIPQIPNQLIRRYTKKDDLIIDPFLGSGTTLYE 73
Query: 241 AKKLRRSFIGIEMK 254
+KL R IG ++
Sbjct: 74 CEKLNRKCIGFDIN 87
>gi|182413004|ref|YP_001818070.1| adenine-specific DNA methylase [Opitutus terrae PB90-1]
gi|177840218|gb|ACB74470.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Opitutus terrae PB90-1]
Length = 610
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 35 LPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSWDK-------------FSSFEA 80
+ SVDL+ DPPY + +L R A+ +WD S E
Sbjct: 412 MADASVDLVITDPPYYDSIQYAELSRLFRVFAQALGLNWDDRVENDEAVPNRHLGCSHEQ 471
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y A RR LK +G + + I +
Sbjct: 472 YVTRLTAIFAETRRTLKRSGRMLLTFHDSKILAWQAI 508
>gi|331686052|ref|ZP_08386613.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
gi|331076724|gb|EGI47961.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
Length = 30
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ I+G+ + V+ P +VD I DPPY
Sbjct: 3 RFIQGDCVRVMATFPGNAVDFILTDPPY 30
>gi|291280689|ref|YP_003497523.1| site-specific DNA-methyltransferase [Deferribacter desulfuricans
SSM1]
gi|290755391|dbj|BAI81767.1| site-specific DNA-methyltransferase [Deferribacter desulfuricans
SSM1]
Length = 404
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ P L I+ + +K GDI+ DPF G GT+ A +L R IG ++ ++
Sbjct: 23 TTYLAMFPPTLPYVIIKNFSKEGDIVYDPFCGRGTATFEACRLGRIGIGNDLNPLAYILS 82
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 20/109 (18%)
Query: 23 IIKGNSISVLE----KLPAKSVDLIFADPPY--------------NLQLNGQLYRPDHSL 64
+ ++I + K SV LI PPY L +
Sbjct: 231 VFNTDAIEATKLVKRKFGNNSVQLIITSPPYLKVINYGKYNWIRLWLLNENTEQVDNRVT 290
Query: 65 VDAV--TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ + + + Y + + +L+ G +V+ I
Sbjct: 291 LYQRLQNQNLKDNMNLQEYSKYMFKLFNSWEYILRKGGYAFVVMGDVKI 339
>gi|218515000|ref|ZP_03511840.1| putative DNA methylase protein [Rhizobium etli 8C-3]
Length = 76
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
P AL+S +L TKPGD + DPF G GT+ V ++ R GIE +
Sbjct: 28 FPGALVSALLDRFTKPGDAVFDPFVGLGTTFFVCEQRGRLPYGIEADRQ 76
>gi|300769877|ref|ZP_07079757.1| probable DNA modification methylase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300763328|gb|EFK60144.1| probable DNA modification methylase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 376
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ T P + R+L TK D++ DPF G GT+ A+ L + GI+ +A
Sbjct: 24 YFTMFPLSFPYRVLQ-KTKKTDVVYDPFCGRGTTNFAARLLGLNSYGIDSNPIAHAVAQS 82
Query: 264 RIA 266
++
Sbjct: 83 KLQ 85
>gi|86142911|ref|ZP_01061333.1| type II R/M system [Leeuwenhoekiella blandensis MED217]
gi|85830356|gb|EAQ48815.1| type II R/M system [Leeuwenhoekiella blandensis MED217]
Length = 415
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
P +L + T D++ DPF G GT+ ++ L R IG ++ + ++
Sbjct: 30 FPPSLAKYFIKYFTDENDLVFDPFSGRGTTILESRILNRKSIGSDLNPIALALS 83
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 23 IIKGNSISV-----LEKLPAKSVDLIFADPPYNLQLNGQLYRPD------HSLVDAVTDS 71
I + ++ + L+K VDLI PPY L + + S +++
Sbjct: 228 IFECDAKEISKSEKLKKYQ-GKVDLILTSPPY-LGIVNYAKQNWIRSWFLDSDPIEISEK 285
Query: 72 WDKFSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGS 107
D + + F++ L +++LKPNG ++VIG
Sbjct: 286 LDDDLNINQWVQFSKKTLFEFKKMLKPNGVAVFVIGD 322
>gi|21241447|ref|NP_641029.1| hypothetical protein XAC0676 [Xanthomonas axonopodis pv. citri str.
306]
gi|21106786|gb|AAM35565.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 354
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + ++PG+ + DPF G G+S A R+ G+E+ +A R+
Sbjct: 42 IRPFVRHFSRPGEQVFDPFCGFGSSLLAAALEGRNAHGMEIDPARAQLARARLQRHA 98
>gi|295106973|emb|CBL04516.1| DNA methylase. [Gordonibacter pamelaeae 7-10-1-b]
Length = 115
Score = 49.7 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
++H ++ R++ + PG+++ DPF G T A KL R G+E+ Y
Sbjct: 31 RQMHVCPLQFDIVDRLVERYSNPGELVYDPFAGLMTVPLRALKLGRRGRGVELNAGYW 88
>gi|294666882|ref|ZP_06732113.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603330|gb|EFF46750.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 354
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + + PG+ + DPF G G+S A R+ G+E+ +A R+
Sbjct: 42 MRPFVRHFSLPGEQVFDPFCGFGSSLLAAALEGRNAHGMEIDPARAQLARARLQRHA 98
>gi|218666381|ref|YP_002425657.1| modification methylase, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|218518594|gb|ACK79180.1| modification methylase, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 204
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R G H +P + + T+P D+++DPF G+ +G A++L R ++ E
Sbjct: 118 RHAKAMGLPTHGAMQPTTIPDFFIRLLTQPDDLVVDPFGGTVKTGLAAERLGRRWLVTEW 177
Query: 254 KQDYIDIA 261
+Y+ A
Sbjct: 178 MLEYLRGA 185
>gi|124004584|ref|ZP_01689429.1| DNA methylase domain protein [Microscilla marina ATCC 23134]
gi|123990156|gb|EAY29670.1| DNA methylase domain protein [Microscilla marina ATCC 23134]
Length = 522
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 35/225 (15%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFAD-PPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+++I G++ +VL L ++S+DL++ D PP + D + V +
Sbjct: 1 MNQLILGDTQNVLAVLESQSIDLVYIDLPP---------HIVDPATVTSSNKQ------A 45
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILND-IVWRKSNP 136
+ Y + + + +LK +++V I S + + T L + K
Sbjct: 46 KNYQKWLKNTIKHTLPLLKSTASVFVNIPSSLKEWAVNTALPKHFEEAHYKGEIKWKPTQ 105
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
+ T+++ + ++ YT NY + + D S
Sbjct: 106 NTGNLSVHTSLQYTTILYYAR---SEQYTCNYPYNEHYLNQIYRYEDSKGRYRLDSLNSV 162
Query: 197 NKDG----EKLHPTQ-----KPEA-LLSR----ILVSSTKPGDII 227
+ DG K H PE L+ +L D I
Sbjct: 163 HADGFFYSYKGHEAPTSGWAFPEETLIEWEHLGLLNIPANNDDPI 207
>gi|237814033|ref|YP_002898484.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
MSHR346]
gi|237505089|gb|ACQ97407.1| DNA (cytosine-5-)-methyltransferase [Burkholderia pseudomallei
MSHR346]
Length = 138
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K H T+KP + ++ G ++ D F GSGT A A++ ++G E Q Y I+
Sbjct: 62 KQHVTEKPLDIAREVVRLM-PAGVVVCDLFAGSGTFLAAAREAGLHWVGSESNQAYHAIS 120
Query: 262 TKRIASVQ 269
+ R+ +
Sbjct: 121 SARLDATA 128
>gi|158335560|ref|YP_001516732.1| DNA modification methylase [Acaryochloris marina MBIC11017]
gi|158305801|gb|ABW27418.1| DNA modification methylase, putative [Acaryochloris marina
MBIC11017]
Length = 368
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+G + T P IL G+ +LDPF G GT+ ++ L IGI+
Sbjct: 12 NGICPYFTMFPLDFPYSILEEHGSRGEWVLDPFCGRGTTIYASRLLGMPSIGIDSSPVAT 71
Query: 259 DIATKRIASVQPLG--NIELTVLTGKRTEPRVAFNLLVERGL 298
I+ ++ +++P + + +L + E
Sbjct: 72 AISEAKLVNIKPGHIVSTAIKILKNAEEPSDIPTGEFWELAF 113
>gi|307273968|ref|ZP_07555178.1| hypothetical protein HMPREF9514_02710 [Enterococcus faecalis
TX0855]
gi|306509276|gb|EFM78336.1| hypothetical protein HMPREF9514_02710 [Enterococcus faecalis
TX0855]
Length = 77
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
D + KP L+ RI+ + P I+LD F GS T+ ++
Sbjct: 24 DDKAYFSYPKPVPLIKRIVELYSNPDSIVLDFFSGSATTAEAVMRMN 70
>gi|153870329|ref|ZP_01999753.1| DNA methylase [Beggiatoa sp. PS]
gi|152073202|gb|EDN70244.1| DNA methylase [Beggiatoa sp. PS]
Length = 725
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 35/212 (16%)
Query: 7 LAINENQNSIFEWKD--KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
L + + + + K+ I+ G+S + L LP SVD I DPPY ++ + S
Sbjct: 446 LKMVDTYEAFLKEKNAALIMNGDS-ATLP-LPNNSVDAIVTDPPYF----DLIHYSELSD 499
Query: 65 VD------AVTDSWDKFS-------------SFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
A+ D++D F+ + + + A C RVLK NG ++
Sbjct: 500 FFYAWLQLALKDTYDYFNQETSSHSGEVQNRNPDKFMAQLTRVFSECFRVLKENG--LMV 557
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHET------LIWASPSP 159
S+H++ + ++ G + + +T ++ P
Sbjct: 558 FSFHHLLPQAWLSIYQALTQSQFVIVAAYPVKAEMLGNKVKPNVKTAIYIDAIMVCKKQP 617
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSG 191
++ ++ + G
Sbjct: 618 QSDKPKYSELDDLWLQAKKTYHTYCKRFGTVG 649
>gi|254478002|ref|ZP_05091386.1| DNA methylase domain protein [Carboxydibrachium pacificum DSM
12653]
gi|214036006|gb|EEB76696.1| DNA methylase domain protein [Carboxydibrachium pacificum DSM
12653]
Length = 862
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYD 82
L +P+ S+D IF DPP+ L L ++ +AV + K Y
Sbjct: 465 LTNIPSNSIDYIFTDPPFGDNLMYSELNFIWEAWLRVFTNNKTEAVINKTQK-KGLYEYQ 523
Query: 83 AFTRAWLLACRRVLKPNGTLWV 104
R+LKP + V
Sbjct: 524 ELMEKCFREMYRILKPGRWMTV 545
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
+ ++ D + + P + +N H T+ P + R +
Sbjct: 37 CPNPFIKDFIEKYGKKYDEETDDYEVEPFAADVSEGKNDPIYNAHSYHTKVPPKAIMRYI 96
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ TKPGDI+ D F G+G +G A
Sbjct: 97 LHYTKPGDIVFDGFCGTGMTGVAAAMC 123
>gi|326204499|ref|ZP_08194356.1| DNA methylase N-4/N-6 domain protein [Clostridium papyrosolvens DSM
2782]
gi|325985292|gb|EGD46131.1| DNA methylase N-4/N-6 domain protein [Clostridium papyrosolvens DSM
2782]
Length = 850
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 9 INENQNSIFEWKDKI-IKGNSI------SVLEKLPAKSVDLIFADPPYNLQLNG------ 55
+ + + +K + I + + + S+D IF DPP+ L
Sbjct: 424 LKSRVADVENYINKTNYNDDCIISCQSTTSMSNINDNSIDYIFTDPPFGENLMYSELNFL 483
Query: 56 ---QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
L ++ +A+ + + + Y + R+LKP + V
Sbjct: 484 WEAWLKVFTNNRHEAIMNKV-QNKTLNEYQDLMEKCFMENYRILKPGRWMTV 534
Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGS 234
D + + + P + +N H T+ P + R ++ TKPGDI+ D F G+
Sbjct: 54 DEENDNYNVEPYTADVSEGKNDPIYNAHSYHTKVPHKAIMRYILHYTKPGDIVFDGFCGT 113
Query: 235 GTSGAVAKKLR 245
G +G ++
Sbjct: 114 GMTGVASQMCG 124
>gi|308189844|ref|YP_003922775.1| DNA methylase - type II R/M system [Mycoplasma fermentans JER]
gi|307624586|gb|ADN68891.1| putative DNA methylase - type II R/M system [Mycoplasma fermentans
JER]
Length = 396
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 35/82 (42%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ P L + TK D ++D G GT+ ++KL R F+G ++ ++
Sbjct: 37 YLAMFPVELPLYFIKKYTKENDTVMDNLSGRGTTAYASRKLNRKFVGNDLNPYAFVLSKS 96
Query: 264 RIASVQPLGNIELTVLTGKRTE 285
++ ++ + IE + K
Sbjct: 97 KLINISNIEKIEKRIKELKNKY 118
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ K + +++N SIF++ + S++ L L SVDL+ PPY ++
Sbjct: 228 LKIKWEIFLSKNYESIFKYWN------SLNSLNFLKNNSVDLVITSPPYLSLVDYTKSNW 281
Query: 61 DHSLVDAVTDSWDKFS-------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ + K + Y F + +L+ LKP + ++ F
Sbjct: 282 LRLWLLGFEKNNLKKEIKLSDSLDLKEYTNFIKKYLINISNKLKPKAKVCLVIGDVYDFE 341
Query: 114 IGTMLQ 119
+ +
Sbjct: 342 LVENIW 347
>gi|257467076|ref|ZP_05631387.1| hypothetical protein FgonA2_06514 [Fusobacterium gonidiaformans
ATCC 25563]
gi|315918209|ref|ZP_07914449.1| chromosome partitioning protein parB [Fusobacterium gonidiaformans
ATCC 25563]
gi|313692084|gb|EFS28919.1| chromosome partitioning protein parB [Fusobacterium gonidiaformans
ATCC 25563]
Length = 151
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 13/149 (8%)
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
++ G +V + + L+ +VW K++ N + + HE ++
Sbjct: 1 MEEGGAFYVFYAESEVIAFRDALEKSGLKYSQTLVWVKNSF--NLSRQDYNWKHEPCLYG 58
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG-----------EKLH 204
KA + ++ + ++ + L K +H
Sbjct: 59 WKLGKAHYFIKDFTQDTELQTEEILKKMSKKELIQHILELEEKVYTTVIRENKPLKNDVH 118
Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFG 233
PT KP LL+R++ +S+K G ++D F G
Sbjct: 119 PTMKPIKLLARLIANSSKKGWKVIDLFGG 147
>gi|167037340|ref|YP_001664918.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115756|ref|YP_004185915.1| DNA methylase N-4/N-6 domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856174|gb|ABY94582.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928847|gb|ADV79532.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 845
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYD 82
L++ S+D IF DPP+ L L ++ +A+ + + Y
Sbjct: 448 LKQFSDNSIDYIFTDPPFGDNLMYSELNFLWEAWLKVFTNNKTEAIINKV-QRKGLHEYQ 506
Query: 83 AFTRAWLLACRRVLKPNGTLWV 104
R+LKP + V
Sbjct: 507 ELMEKAFSEMYRILKPGRWMTV 528
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 181 RSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
P + +N H T+ P + R ++ TKPGDI+ D F G+G +G
Sbjct: 58 DDYNCEPYTADVSEGKNDPIYNAHSYHTKVPHKAIMRYILHYTKPGDIVFDGFCGTGMTG 117
Query: 239 AVAKKLR 245
A+
Sbjct: 118 VAAQMCG 124
>gi|166365488|ref|YP_001657761.1| hypothetical protein MAE_27470 [Microcystis aeruginosa NIES-843]
gi|166087861|dbj|BAG02569.1| hypothetical protein MAE_27470 [Microcystis aeruginosa NIES-843]
Length = 57
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNL 51
GNS++++ +LP +SVDLI PP+ L
Sbjct: 27 YLGNSLTLMGELPDESVDLICTSPPFAL 54
>gi|331640361|ref|ZP_08341509.1| putative methylation subunit, type III restriction-modification
system [Escherichia coli H736]
gi|331040107|gb|EGI12314.1| putative methylation subunit, type III restriction-modification
system [Escherichia coli H736]
Length = 556
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVL 96
VD I+ DPPYN + LY+ + D ++ + + L + +L
Sbjct: 10 NNKVDGIYIDPPYNTNASEILYK------NGYKD--------SSWCSLMSSRLEISKSLL 55
Query: 97 KPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
K N + + + +L+ V + N RGR N
Sbjct: 56 KENAATCTTIDEYEVANLELLLKETFTGYQIRPVVIEY----NHRGRVKSN 102
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 9/122 (7%)
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL- 213
+ K + A K L GSE L + P+++
Sbjct: 217 WAKRIKGEIQIHYRQAGKPKMRKSVWIGPKLDASTYGSELLNSLFNVTQINFSFPKSIYA 276
Query: 214 -SRILVSSTK-PGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRI 265
L S + LD F GSGT+G + R F +E + + + R+
Sbjct: 277 VKECLESLSNSKYAHFLDYFAGSGTTGHAVVDMNRDDNGFRKFSLVEQGEYFYSVTLPRV 336
Query: 266 AS 267
Sbjct: 337 KK 338
>gi|189218335|ref|YP_001938977.1| adenine-specific DNA methylase containing a Zn-ribbon
[Methylacidiphilum infernorum V4]
gi|189185193|gb|ACD82378.1| Adenine-specific DNA methylase containing a Zn-ribbon
[Methylacidiphilum infernorum V4]
Length = 731
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 22/109 (20%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQ--------LYRPDHSLVDAVTD----------- 70
L ++P ++DLI DPPY L+ ++ D
Sbjct: 498 EDLSEIPDGTIDLILTDPPYFDNLSYSELSDFYLAWHQSLGEAEPPFDDPHLAAPIGENL 557
Query: 71 --SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ S Y R C+RVLK NG +V +H
Sbjct: 558 ALTSRDDESIAVYRERLRRIFSECQRVLKRNGV-FVFTYHHKHIAAWNA 605
Score = 39.3 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
G ++LDPF G GTS A + IG ++ I + + E
Sbjct: 103 GAVVLDPFVGGGTSLVEAMRCGAHVIGYDIDPIATFITRFELEAATYDPESE 154
>gi|266618972|ref|ZP_06111909.1| ferrichrome transport ATP-binding protein FhuC [Clostridium
botulinum Bf]
gi|263529020|gb|EEZ28444.1| ferrichrome transport ATP-binding protein FhuC [Clostridium
botulinum Bf]
Length = 123
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 27/138 (19%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I GN + +++K+ KS+D++ +D P+ + + WDK FE
Sbjct: 5 NNIYLGNCLEIMKKIDDKSIDMVLSDLPFGM----------------TNNEWDKAIPFE- 47
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
R+ K N ++ ++ + ++ + + +W+
Sbjct: 48 ------PMWQEINRIAKDNASIALMAAG---VFTSELVVSNKKYYRYSWIWKPKEKSNFL 98
Query: 141 RGRRFQ-NAHETLIWASP 157
R H +
Sbjct: 99 NANRMPLRQHIDIPIFYK 116
>gi|188997491|ref|YP_001931742.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932558|gb|ACD67188.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 385
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 16/178 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
II+ ++ ++ L SVD++F D PY + + + + A S E +
Sbjct: 223 IIQADARNI--PLEDNSVDMVFIDSPYGDNIRYNDHPLNIGHIPA---------SEERFY 271
Query: 83 AFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
++ C R+LK L W+IG + + F + +V
Sbjct: 272 DELEKVMIECHRILKDGKILAWLIGD----QWAKGVYIPVGFKVYERLVKHFEPVDVICV 327
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKD 199
R+ Q ++ + + D + L ER + KD
Sbjct: 328 ARKNQYSNTPFWHSKALQHNFYLRGFKHLIIVRKSDKKRIPKDLKVNWKYYERAKKKD 385
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 13/173 (7%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER--LRNKDGEKLHPTQKPEALLSRIL 217
K YT + ++ + + ++ G + P ++ ++
Sbjct: 121 DGKQYTLDPCKKSELIDEFYRPPIFSTTLWDYPKQSYGDTPKGNNKYAGVTPAFIIYNLI 180
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
T PGD++ DP GSGT+ V K+ RR + ++ DI A + + + +
Sbjct: 181 YRYTYPGDLVCDPMAGSGTTIDVCKEERRRVVAFDIVPTRSDIIQ---ADARNIPLEDNS 237
Query: 278 VLTGKRTEPRVAFNLL----VERGLIQPGQI-LTNAQGNISA---TVCADGTL 322
V P + G I + + + + DG +
Sbjct: 238 VDMVFIDSPYGDNIRYNDHPLNIGHIPASEERFYDELEKVMIECHRILKDGKI 290
>gi|312875573|ref|ZP_07735574.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
2053A-b]
gi|311088827|gb|EFQ47270.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
2053A-b]
Length = 417
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 46 DPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVI 105
DPPYN +Y D S VD S + +F L + +L G +++
Sbjct: 90 DPPYNTGNKDFIY--DDSFVDKTD-----GYSHSKWLSFMSERLEIAKLLLSEEGVIFIS 142
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
H ++ + ++ ++ HE L+ + +
Sbjct: 143 IDDHEQAQLKLLCDSVFGADNFIAESIDASNSSKNNSNYIAVNHEYLLCYAKN 195
>gi|254516160|ref|ZP_05128220.1| modification methylase, type III R/M system [gamma proteobacterium
NOR5-3]
gi|219675882|gb|EED32248.1| modification methylase, type III R/M system [gamma proteobacterium
NOR5-3]
Length = 1134
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 21/155 (13%)
Query: 15 SIFEWKDK----IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
SI + ++ ++ + + L A + V ++ DPPYN + +Y+ +
Sbjct: 496 SIEDLDNQCDGLLVNSENFQAINLLTARYREEVTCVYIDPPYNTDASSIMYK------NG 549
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
++ + + + A + +LK +G L + +L++ L
Sbjct: 550 YK--------SSSWASLMKDRVDASKHLLKASGILVAAIDDEQQTELSYILRDSFNSDLL 601
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ +SNP + +HE ++A S +
Sbjct: 602 GVFSIRSNPSGRPTKTGYSVSHEYNLFAGKSSDSC 636
Score = 36.2 bits (82), Expect = 9.2, Method: Composition-based stats.
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 5/157 (3%)
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW 154
++ + + + + L +R +
Sbjct: 684 YIRDGKVRIPALEWDDAKKAWSTLDKPGENEKVVWPVNDDGREKTWRWEADTVSSAGDSV 743
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC---SGSERLRNKDGEKLHPTQKPEA 211
A ++ + V + S + GS ++ GE + K
Sbjct: 744 AVRPDRSGKDYIYLKRRPNDDGVVSVSSWFDAKYSSVEHGSALIKQLFGEMVFSYPKSLN 803
Query: 212 LLSRILVSS--TKPGDIILDPFFGSGTSGAVAKKLRR 246
+ + + ++LD F GSGT+ + R
Sbjct: 804 TVEDTIHIAGAHSKKAVVLDYFAGSGTTAHAVVEKNR 840
>gi|330836523|ref|YP_004411164.1| DNA methylase N-4/N-6 domain-containing protein [Spirochaeta
coccoides DSM 17374]
gi|329748426|gb|AEC01782.1| DNA methylase N-4/N-6 domain protein [Spirochaeta coccoides DSM
17374]
Length = 245
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
+ IL+ + GD +LD F G GT+ AK L R+ IGI++ D ++ +I P
Sbjct: 42 IPRNILLRYSGEGDWVLDQFVGGGTTLVEAKLLNRNIIGIDVNPDALNRCKAKIDFECPN 101
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 38/135 (28%), Gaps = 18/135 (13%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
L + A S+DLI PPY D + S + +
Sbjct: 115 LSFIEANSIDLICTHPPY----------ADIIHYSEDIEGDLSLMSVRDFLGAMKPVAEE 164
Query: 92 CRRVLKPNGTLWV-IGSYHN-------IFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
C RVLK V +G F + + + F I+ + N +
Sbjct: 165 CYRVLKKGKFCAVLMGDTRKKGCVIPMSFDVMKIFEAAGFVTKEIIIKEQHNCKATGYWK 224
Query: 144 RFQNAHETLIWASPS 158
H L+ A
Sbjct: 225 TNSIKHNFLLLAHEY 239
>gi|310830654|ref|YP_003965755.1| hypothetical protein PPSC2_p0296 [Paenibacillus polymyxa SC2]
gi|309250121|gb|ADO59687.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 328
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + E D +++ L++ P +SVD++ DPPY+ + + Y D+
Sbjct: 192 NDLNEKYDTNYHMDALEFLKQFPDESVDVVLFDPPYSARQIKEAYESVGL------DTQG 245
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ +Y + + R+L+ G G
Sbjct: 246 GVLTRASYWSNMK---KEIARILRVGGKAISFG 275
>gi|256393229|ref|YP_003114793.1| RNA methylase [Catenulispora acidiphila DSM 44928]
gi|256359455|gb|ACU72952.1| putative RNA methylase [Catenulispora acidiphila DSM 44928]
Length = 329
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HP + + + + + T+P D+++DP G GT+ A L R +G+E + + A
Sbjct: 47 AHPAKMLPDIAAYAISTYTQPDDLVVDPMCGIGTTLVEALHLGRRALGVEYEARWAKYAE 106
Query: 263 KRIASVQPLG 272
IA + G
Sbjct: 107 ANIALARAQG 116
>gi|330723413|gb|AEC45783.1| Putative type III restriction-modification system: methylase
[Mycoplasma hyorhinis MCLD]
Length = 369
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 30/243 (12%)
Query: 51 LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL---------LACRRVLKPNGT 101
+L R +D + K +FE Y + L + P+GT
Sbjct: 48 TKLRFDYVRHSQEKLD--KEYKLKDDNFEQYGYYRLERLAYKGLDYQASLDYELEAPDGT 105
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN--AHETLIWASPSP 159
+ I Y NI + T W + S + + + N A++ + +
Sbjct: 106 KFRI--YQNIKKPQT---MRYIWSKELFDYANSLNLVEIKKTQQGNWVAYKKVYQYAKFD 160
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPIC---SGSERLRNKDGEKLHPTQKPEALLSRI 216
+ + + L GS+ + + +K+ KP L+ +
Sbjct: 161 ARTKQFILVEKGVPFTNMIIANQNNLHLNILTEQGSKEMTSIFKDKMFDYPKPVELVKYL 220
Query: 217 LVSSTKPGDI-ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIAS 267
+ ++ DI ILD F GSGT+ +L RSF+ + ++ I ++ +R+
Sbjct: 221 IKMASSKKDIRILDFFAGSGTTAQAVLELNKEDGGRRSFVLVTNNENNIGQNVTYQRLYR 280
Query: 268 VQP 270
+
Sbjct: 281 INK 283
>gi|237751006|ref|ZP_04581486.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
gi|229373451|gb|EEO23842.1| type II DNA modification enzyme [Helicobacter bilis ATCC 43879]
Length = 142
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+PT+K A+L RI+ S+ ++D F G G A L R IGI+ +
Sbjct: 36 KDSQNPAYPTEKNRAILRRIIAMSSNTESKVMDCFCGGGGFLQEALNLGRKIIGIDESIE 95
Query: 257 YIDIATKRIASVQPL 271
I + + I +
Sbjct: 96 AIKLNQQWIKESENH 110
>gi|166368462|ref|YP_001660735.1| hypothetical protein MAE_57210 [Microcystis aeruginosa NIES-843]
gi|166090835|dbj|BAG05543.1| hypothetical protein MAE_57210 [Microcystis aeruginosa NIES-843]
Length = 744
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 192 SERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
++ + G + T++ +++ + + ++PGD+ILDPF GSG + A R I I
Sbjct: 191 KQQAKRHFGVHGYFTKQAWNVVAEYIKNFSQPGDVILDPFGGSGVTAIEALMNNRKAISI 250
Query: 252 EMKQDYI 258
++ I
Sbjct: 251 DINPLAI 257
Score = 39.3 bits (90), Expect = 0.98, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 12/108 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-----------QLYRPDHSLVDAVTD 70
KI+KG + L + +SVD I+ DPPY ++ L + +
Sbjct: 428 KIVKGTATD-LSFIENESVDYIYTDPPYGKKIPYLDLSIMWNAWLDLEVTEKDYQLEAIE 486
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
S + Y+ + RVLK L + ++ + +L
Sbjct: 487 GGTIQKSKQEYNQLIAQSIREMYRVLKFERWLSFVFAHKDPEFWHLIL 534
>gi|306818333|ref|ZP_07452059.1| type III restriction-modification system StyLTI enzyme mod
[Mobiluncus mulieris ATCC 35239]
gi|304648842|gb|EFM46141.1| type III restriction-modification system StyLTI enzyme mod
[Mobiluncus mulieris ATCC 35239]
Length = 487
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 37/133 (27%), Gaps = 1/133 (0%)
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN-LNFWILNDIVWRKSNP 136
+ + L R +L +G +++ + + + + +
Sbjct: 32 HSDWCSMMYPRLKLARELLSDDGVIFISIDDNENRNLRIICDEVFGEANFVSQLIWERAY 91
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
P + N+H+ ++ + S + +A +D ++
Sbjct: 92 SPKNDAKYVSNSHDYVLVYAKSIEHFVIGRLPRTAEANARYKNPDNDPRGVWKPSDLSVK 151
Query: 197 NKDGEKLHPTQKP 209
E +P P
Sbjct: 152 TYSAESDYPITTP 164
Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 176 EDVQMRSDWLIPICSGSERLRNK-----DGEKLHPTQKPEALLSRIL-VSSTKPGDIILD 229
+ + S S+ + DG+ KP LL R++ +++ GD++LD
Sbjct: 215 DGMAPTSIMFYKEVGHSQEGAKELVTLFDGKGYFDGPKPTKLLQRLITLANLADGDVVLD 274
Query: 230 PFFGSGTSGAV 240
F GS ++
Sbjct: 275 FFSGSASTAHA 285
>gi|88604279|ref|YP_504457.1| methyltransferase DNA modification enzyme [Methanospirillum
hungatei JF-1]
gi|88189741|gb|ABD42738.1| methyltransferase DNA modification enzyme [Methanospirillum
hungatei JF-1]
Length = 421
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH---- 204
HE L S + T D + + + D + R + KLH
Sbjct: 9 HEYLRMFSLPDQDGQTTLQLD-QTTRCDTLCINDDEYCRYTNEFWTARQRQASKLHEISY 67
Query: 205 -PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
KP L + T+PG+ + DPF G GT+ A L R I ++ +
Sbjct: 68 RACFKP-QLPRFFISLLTEPGERVYDPFTGRGTTPLEAALLGRQIISNDINPLSRILTEP 126
Query: 264 RI 265
R+
Sbjct: 127 RL 128
>gi|134300088|ref|YP_001113584.1| DNA methylase N-4/N-6 domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134052788|gb|ABO50759.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum reducens
MI-1]
Length = 396
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 192 SERLRNKDGEK-LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK-------K 243
+R+ + K + KP LL ++++ +TK DI+LD F GS ++ K
Sbjct: 148 KKRIDDILEHKGIFEYTKPIKLLQKLMLIATKKNDIVLDFFSGSASTADALLSLSAEENK 207
Query: 244 LRRSFIGIEM 253
R FI +++
Sbjct: 208 GNRKFIMVQL 217
>gi|62179778|ref|YP_216195.1| hypothetical protein SC1208 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62127411|gb|AAX65114.1| hypothetical protein SCH_1208 [Phage Gifsy-1]
gi|322714245|gb|EFZ05816.1| DNA methylase N-4/N-6 [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 60
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
I+ +S+KPGD++ D F GSG++ A R I +E++ +
Sbjct: 5 IINASSKPGDLVADFFMGSGSTVKAALLSGRRAISVELETERF 47
>gi|304372978|ref|YP_003856187.1| Putative type III restriction-modification system: methylase
[Mycoplasma hyorhinis HUB-1]
gi|304309169|gb|ADM21649.1| Putative type III restriction-modification system: methylase
[Mycoplasma hyorhinis HUB-1]
Length = 367
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 30/243 (12%)
Query: 51 LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL---------LACRRVLKPNGT 101
+L R +D + K +FE Y + L + P+GT
Sbjct: 50 TKLRFDYVRHSQEKLD--KEYKLKDDNFEQYGYYRLERLAYKGLDYQASLDYELEAPDGT 107
Query: 102 LWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN--AHETLIWASPSP 159
+ I Y NI + T W + S + + + N A++ + +
Sbjct: 108 KFRI--YQNIKKPQT---MCYIWSKELFDYANSLNLVEIKKTQQGNWVAYKKVYQYAKFD 162
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPIC---SGSERLRNKDGEKLHPTQKPEALLSRI 216
+ + + L GS+ + + +K+ KP L+ +
Sbjct: 163 ARTKQFILVEKGVPFTNMIIANQNNLHLNILTEQGSKEMTSIFKDKMFDYPKPVELVKYL 222
Query: 217 LVSSTKPGDI-ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIAS 267
+ ++ DI ILD F GSGT+ +L RS+I + ++ I ++ +R+
Sbjct: 223 IKMASSKKDIRILDFFAGSGTTAQAVLELNKEDGGTRSYILVTNNENNIGQNVTYERLYR 282
Query: 268 VQP 270
+
Sbjct: 283 INK 285
>gi|317474030|ref|ZP_07933309.1| hypothetical protein HMPREF1016_00287 [Bacteroides eggerthii
1_2_48FAA]
gi|316909872|gb|EFV31547.1| hypothetical protein HMPREF1016_00287 [Bacteroides eggerthii
1_2_48FAA]
Length = 608
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 21/181 (11%)
Query: 36 PAKSVDLIFADPPYNLQLNG----QLYRPDHS---------LVDAVTDSWDKF---SSFE 79
P SVD I DPPY + + P + ++AV + F S
Sbjct: 381 PESSVDAIITDPPYGSNVQYLELSHFWYPWNQDLYERYPIFELEAVANRKKGFNGAKSQY 440
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ RVLKP L + + +I +L ++ + + N
Sbjct: 441 DYENNLYEVFKNAYRVLKPMRYLSLTFNNKDICSWLALLFSILKSGFTFDRMYFQDGVKN 500
Query: 140 FRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+R A + + + + + D D + +E
Sbjct: 501 YRQTAHTKAKGSPYGDFIYTFKKVDSIPVKVYTTEEDFIYDIDNIFLKDISCSDENRNEM 560
Query: 195 L 195
+
Sbjct: 561 I 561
Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ ++P + ++++ + T PG+IILDPF G G + R IG ++
Sbjct: 23 YFARRPHNVFNQLIENFTSPGEIILDPFCGGGVTIYEGVTQDRRVIGCDLNP 74
>gi|218130523|ref|ZP_03459327.1| hypothetical protein BACEGG_02112 [Bacteroides eggerthii DSM 20697]
gi|217987309|gb|EEC53639.1| hypothetical protein BACEGG_02112 [Bacteroides eggerthii DSM 20697]
Length = 608
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 21/181 (11%)
Query: 36 PAKSVDLIFADPPYNLQLNG----QLYRPDHS---------LVDAVTDSWDKF---SSFE 79
P SVD I DPPY + + P + ++AV + F S
Sbjct: 381 PESSVDAIITDPPYGSNVQYLELSHFWYPWNQDLYERYPIFELEAVANRKKGFNGAKSQY 440
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
Y+ RVLKP L + + +I +L ++ + + N
Sbjct: 441 DYENNLYEVFKNAYRVLKPMRYLSLTFNNKDICSWLALLFSILKSGFTFDRMYFQDGVKN 500
Query: 140 FRGRRFQNAH-----ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSER 194
+R A + + + + + D D + +E
Sbjct: 501 YRQTAHTKAKGSPYGDFIYTFKKVDSIPVKVYTTEEDFIYDIDNIFLKDISCSDENRNEM 560
Query: 195 L 195
+
Sbjct: 561 I 561
Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ ++P + ++++ + T PG+IILDPF G G + R IG ++
Sbjct: 23 YFARRPHNVFNQLIENFTSPGEIILDPFCGGGVTIYEGVTQDRRVIGCDLNP 74
>gi|209884695|ref|YP_002288552.1| DNA methylase N-4/N-6 domain protein [Oligotropha carboxidovorans
OM5]
gi|209872891|gb|ACI92687.1| DNA methylase N-4/N-6 domain protein [Oligotropha carboxidovorans
OM5]
Length = 856
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
L++ G +LH ++ R + T PG+ + DPF G T A L+R IG+E+
Sbjct: 763 LQHAKGRELHLCPLQFDIVDRAITQYTMPGETVFDPFGGLMTVPYRAIALKRRGIGVELS 822
Query: 255 QDYI 258
Y
Sbjct: 823 PSYF 826
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+ + + + SVDLI P++ Q D D F +
Sbjct: 496 VNNDCVEETRSMAGDSVDLIVTSIPFSTQYEYTPSYND---FGHTDDDVHFFRQMD---- 548
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYH 109
F R+LKP +
Sbjct: 549 FLTP---ELLRILKPGRIAMIHCKDR 571
>gi|20385053|gb|AAM21167.1|AF254788_2 BssSI DNA modification methyltransferase [Geobacillus
stearothermophilus]
Length = 1127
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 8/114 (7%)
Query: 196 RNKDGEKLHPTQKPE-----ALLSRILVSS---TKPGDIILDPFFGSGTSGAVAKKLRRS 247
+NK+G +H K L+ +L + DPF GSGT+ K L
Sbjct: 722 KNKEGIPIHNWYKYTQGFSADLIEYLLDEMGIKRNKEIKVFDPFVGSGTTLLSCKYLGIH 781
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP 301
G+++ I +I + + +L K ++ L+ ++
Sbjct: 782 SFGVDISPLMTWITNIKIQNWKVNELEDLLNDLSKAQITPISDPTLLFNDYLKK 835
>gi|258508021|ref|YP_003170772.1| type III restriction-modification system methylation subunit
[Lactobacillus rhamnosus GG]
gi|257147948|emb|CAR86921.1| Type III restriction-modification system methylation subunit
[Lactobacillus rhamnosus GG]
Length = 273
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 13/134 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG T KP L+ R L +LD F GS T+ +L +
Sbjct: 6 DGVSPFGTPKPVELIKRFLELQNDDDATVLDFFAGSSTTAEAVMQLN------------V 53
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ R + L + + P E G ++ + +
Sbjct: 54 EDGGHRKFIMAQLPEKTYHINKNGKEVPTKGGKAAYESGFKSIDEVSRERIRRAAKKIRE 113
Query: 319 DGTLIS-GTELGSI 331
D L GS
Sbjct: 114 DNELTLPEDFDGSF 127
>gi|319902498|ref|YP_004162226.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacteroides
helcogenes P 36-108]
gi|319417529|gb|ADV44640.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacteroides
helcogenes P 36-108]
Length = 1038
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKS---VDLIFADPPYNLQLNGQLYRPDHSL 64
I+EN N + I G++ + L K + I+ DPPYN + + LY+ +
Sbjct: 458 NIDENTNGLM------INGDNYHAINLLQEKCKKRISCIYGDPPYNAKSSEILYKNNFK- 510
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
++ A + L + G + + F + +L L +
Sbjct: 511 -------------HSSWIAMMNSRLELVSPLKTERGAIVTAIDENEGFNLMKLLDTLFPY 557
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKA 161
V NP +G F +HE I+ + K
Sbjct: 558 WSKTAVSVLHNP-AGVQGDNFSYSHEYAIFLFENFKH 593
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 14/165 (8%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGT 236
GS+ L N G K K +S +++ + II+D F GSGT
Sbjct: 712 WDDKKYYANVYGSKLLNNIMGTKKFDFPKSLYTISDCILAVNEVQKGHSIIMDYFAGSGT 771
Query: 237 SGAVAK------KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
+G K R +I IEM + + + R+ V + + T +
Sbjct: 772 TGHAVINLNRKDKGNRKYILIEMGEYFDSVTKPRMTKVIYSPDWKDGKPTIRNKGISQIM 831
Query: 291 NLLVERGLIQPGQILT-NAQGNISATVCAD----GTLISGTELGS 330
+ ++ + +G+ + D G ++ GS
Sbjct: 832 KYMRLESYEDALSNISLDEKGSFFGSNLGDEYLIGYMLDMESKGS 876
>gi|156741917|ref|YP_001432046.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156233245|gb|ABU58028.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 375
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 46/109 (42%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
N + + + R + + + +++ TK GD +LD
Sbjct: 118 NDINLNRWKEYDDIYTDSLWLIDRRDSSGVHTAGYWGNFVPQIPYQMMRRYTKKGDWVLD 177
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
F GSGT+ ++L R+ IG+E++ ++ A + I+S N+ + V
Sbjct: 178 TFAGSGTTLIEGQRLGRNTIGVELQPQMVEHARRLISSEPNRYNVVIDV 226
>gi|16082511|ref|NP_393798.1| adenine-specific DNA methylase [Thermoplasma acidophilum DSM 1728]
Length = 346
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ + P+ Y+ + DV S + ER + +
Sbjct: 77 EIYRMAFRPRKLPYSDMDLSRWREYGDVITDS-----LWIFKERDYSGSKLGWYWGNFVP 131
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ ++++ TK + ++DPF GSGT+ AKKL R+ IGIE+ +
Sbjct: 132 QIPRQMMMRYTKRNEWVIDPFSGSGTTLIEAKKLGRNAIGIEINPE 177
>gi|37525858|ref|NP_929202.1| hypothetical protein plu1935 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785287|emb|CAE14228.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 695
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 35/151 (23%)
Query: 5 NSLAINENQNSIFEWKD-----KIIKGNSISVLEKLPAKSVDLIFADPPYN--------- 50
+ + +N Q S +K+ I+ +S S+ +P SVD + DPPY
Sbjct: 443 DPIRVNPTQ-SWETFKNASQGALILNADSSSL--PIPNSSVDAVITDPPYFDFVHYSELS 499
Query: 51 -----------LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
L R D S + V D E++ + C RVLK +
Sbjct: 500 DFFYAWLSNALSGEYEYLNRKDSSHENEVQD-----RDNESFTRKICSIFKECNRVLKED 554
Query: 100 GTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
G + SYH+ G M + +
Sbjct: 555 G--LLCFSYHHSTIDGWMAIYDSVTKAGFDI 583
>gi|332797437|ref|YP_004458937.1| Cytosine methylase [Acidianus hospitalis W1]
gi|332695172|gb|AEE94639.1| Cytosine methylase [Acidianus hospitalis W1]
Length = 403
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+P + ++ + + TKPG+ + DPF GSGT A+ R++I ++
Sbjct: 36 YPAKFIPNVVRYFIEAYTKPGETLFDPFAGSGTVAIEAEITGRNYILWDLNP 87
>gi|172040052|ref|YP_001799766.1| hypothetical protein cur_0372 [Corynebacterium urealyticum DSM
7109]
gi|171851356|emb|CAQ04332.1| hypothetical protein cu0372 [Corynebacterium urealyticum DSM 7109]
Length = 261
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
A++ ++ + + PGD++ DPF G GT+ A +L R GIE+ + +A R
Sbjct: 63 AIVDHVIRAYSAPGDLVFDPFAGFGTTLIRAVRLDRRAGGIELLPE--RVAQIR 114
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 20/108 (18%)
Query: 26 GNSISVLEKLPAKS-----------VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
G++ +L L + S VDL+ PPY G+ +
Sbjct: 125 GDARRILPMLASSSEHRQENEPRPVVDLVLTSPPYMAATEGEADPLEAYECGG------- 177
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGT-LWVIGSYHNIFRIGTMLQNL 121
+ Y A C R++ P G +W +G + + ++ +
Sbjct: 178 -GDYRRYLAELGGVAAECARLVVPGGHVVWNVGDIRHAGALTPLIADC 224
>gi|189501357|ref|YP_001960827.1| hypothetical protein Cphamn1_2452 [Chlorobium phaeobacteroides BS1]
gi|189496798|gb|ACE05346.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
Length = 402
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADP 47
+I G+S+ LE P +S DLIF DP
Sbjct: 143 TVIHGDSVKTLETFPDESFDLIFIDP 168
>gi|229582793|ref|YP_002841192.1| hypothetical protein YN1551_2288 [Sulfolobus islandicus Y.N.15.51]
gi|228013509|gb|ACP49270.1| conserved hypothetical protein [Sulfolobus islandicus Y.N.15.51]
Length = 403
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+P + ++ + + TKPG+ + DPF GSGT A+ R++I ++
Sbjct: 36 YPAKFIPNVIRYFIEAYTKPGETLFDPFAGSGTVAIEAEITGRNYILWDLNP 87
>gi|145629606|ref|ZP_01785403.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae 22.1-21]
gi|144978117|gb|EDJ87890.1| putative type III restriction-modification system methyltransferase
[Haemophilus influenzae 22.1-21]
Length = 298
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 29/127 (22%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKK----- 243
+G+ L + K K L+ +++ + P D+ILD F GSGT+ +
Sbjct: 43 NGTAELEDLFEAKYFDFPKSIQLIKQLIEQAILNPNDLILDFFAGSGTTAHAVMQLNAED 102
Query: 244 ---LRRSFIGIEM-------KQDY-------IDIATKRIASVQPLGNIELTV------LT 280
R FI +++ + Y DI RI +
Sbjct: 103 EDNGNRKFICVQLPEPTDEKSEAYKAGYKTIFDITKARIEKSAVKIRQDFKETTADLGFK 162
Query: 281 GKRTEPR 287
+TEP
Sbjct: 163 IFKTEPH 169
>gi|284165691|ref|YP_003403970.1| hypothetical protein Htur_2419 [Haloterrigena turkmenica DSM 5511]
gi|284015346|gb|ADB61297.1| hypothetical protein Htur_2419 [Haloterrigena turkmenica DSM 5511]
Length = 361
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDY 257
H QKP L + ++ +K GD +LDPF G G + A R IG E + +
Sbjct: 96 HGGQKPPRLCAELIGRFSKAGDTVLDPFAGVGGTLLGASLCEHEGTGLREAIGFERNRRW 155
Query: 258 IDI 260
I++
Sbjct: 156 IEL 158
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 27/111 (24%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH----SLVDAVT-----DSWDKF 75
G+ +++++ SVDL+ D PY + R + S + A D D
Sbjct: 185 HGDCADLIDEIDDGSVDLLLTDVPYWHMDELEQTRNERATRESKLGAFDAAAAPDEGDGE 244
Query: 76 S------------------SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ + A + P+G L V
Sbjct: 245 ETAADEGTATETDAETETGTKAEWLEDMAAKFERFTDAVAPDGHLVVFIGD 295
>gi|10639461|emb|CAC11463.1| probable type II DNA modification enzyme (methyltransferase)
[Thermoplasma acidophilum]
Length = 323
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
+ + P+ Y+ + DV S + ER + +
Sbjct: 54 EIYRMAFRPRKLPYSDMDLSRWREYGDVITDS-----LWIFKERDYSGSKLGWYWGNFVP 108
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ ++++ TK + ++DPF GSGT+ AKKL R+ IGIE+ +
Sbjct: 109 QIPRQMMMRYTKRNEWVIDPFSGSGTTLIEAKKLGRNAIGIEINPE 154
>gi|258512351|ref|YP_003185785.1| putative DNA modification methylase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257479077|gb|ACV59396.1| putative DNA modification methylase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 369
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ T P A R+L + +LDPF G GT+ A+ +G+++ + IA
Sbjct: 22 YYTMFPLAFPLRVLAGA--ERGWVLDPFCGRGTTNFAARLAGFPTVGVDINPIAVAIAQA 79
Query: 264 RIASVQPLGNIELTVLTGKRTEP 286
++AS G +E + P
Sbjct: 80 KLASTTVHGVVERCQQILESEAP 102
>gi|163796548|ref|ZP_02190507.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
gi|159178108|gb|EDP62653.1| DNA methylase N-4/N-6 [alpha proteobacterium BAL199]
Length = 625
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDSW-------DK 74
+I G+S +V LP+ S+D +F DPP+ + +L + + + TD D+
Sbjct: 399 VIHGSSCNV--GLPSGSIDYVFTDPPFGANIPYAELSFINEAWLKIFTDRTDEAIVSPDQ 456
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNG 100
+ + Y RR+LKP+G
Sbjct: 457 GKAIDEYRELLTRSFSEARRILKPSG 482
Score = 43.1 bits (100), Expect = 0.079, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+R G +PT+ ++ + + TKPGD + D F GSGT+G A R
Sbjct: 31 KRTGPLFGAFPYPTKISPEAIALYIAAHTKPGDTVFDGFGGSGTTGLAALLCER 84
>gi|210620629|ref|ZP_03292153.1| hypothetical protein CLOHIR_00096 [Clostridium hiranonis DSM 13275]
gi|210155238|gb|EEA86244.1| hypothetical protein CLOHIR_00096 [Clostridium hiranonis DSM 13275]
Length = 243
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%)
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
N + + ER + + +++ +K GD+ILD F
Sbjct: 1 MINWEPSNFKLETGTVWIFPERGSWATHTPKYRGNFSPYVPRNLILRYSKKGDMILDQFA 60
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
G GT+ AK L R+ IG+++ + + + R +
Sbjct: 61 GGGTTLIEAKLLGRNIIGVDVNIQALALCRSSTNFEYKNSSKVYLRRGDARNLNFIP 117
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 12 NQNSIFEWKD--KIIK--GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
++ FE+K+ K+ G++ + L +P + +D I PPY + + +
Sbjct: 90 RSSTNFEYKNSSKVYLRRGDARN-LNFIPDEKIDFICTHPPYADAIKYSKDIVEDISL-- 146
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
++++ RVLK ++
Sbjct: 147 --------LDYKSFLKEMEKVAKESYRVLKKGKYCAILMGD 179
>gi|54020181|ref|YP_115910.1| hypothetical protein mhp400 [Mycoplasma hyopneumoniae 232]
gi|53987354|gb|AAV27555.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
Length = 420
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 12/152 (7%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------R 246
++ ++ EK+ K AL+ ++ +LD F GSGT+G +L R
Sbjct: 253 NKIFSESSEKVFNFPKSTALIEYLINLHPNKNARVLDFFAGSGTTGQAVLELNSQDGGTR 312
Query: 247 SFIGIEMKQDYI--DIATKRIASVQP--LGNIELTVLTGKRTEPRVAFNLLVERGLIQPG 302
SF I Q+ I ++ +R+ + E K+ +P +
Sbjct: 313 SFTLITNNQNKIAENVTYERLFRINHGFGTKKEQNFDWIKKNQPYKTNLDVFRINYF--N 370
Query: 303 QILTNAQGNISATVCADGTLISGTELGSIHRV 334
+ N + +++ V +++ + S + +
Sbjct: 371 TEIFNKENDVNLLVKKLEKMLTNFGISSKNSI 402
>gi|317055383|ref|YP_004103850.1| DNA methylase N-4/N-6 domain-containing protein [Ruminococcus albus
7]
gi|315447652|gb|ADU21216.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
Length = 247
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
+ I++ ++ GD++LD F G GT+ AK L R IG++ + + ++I P
Sbjct: 43 IPRNIILRYSQEGDLVLDQFAGGGTTLVEAKLLNRDIIGVDCNDEALTRCREKIDFDYPP 102
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 11/106 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ KG++ L +SVDLI PPY + P+ V D +
Sbjct: 109 LYKGDARD-LYFQSDESVDLICTHPPYADIIKYSDGIPEDLSQLKVKD----------FL 157
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ C RVLK V+ + I +
Sbjct: 158 EAMKPVAAECYRVLKKGKFCAVLMGDTRQKGCMIPMSFDVMKIFQE 203
>gi|225551621|ref|ZP_03772567.1| DNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|225379436|gb|EEH01801.1| DNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
Length = 368
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 10/147 (6%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + + G++ L + KP+ L+ +L +LD F GSGT+
Sbjct: 184 LYLEKYFKSTTEHGTKELNDILENNNFSYPKPKELICYLLEIIQNKNARVLDFFAGSGTT 243
Query: 238 GAVAKK------LRRSFIGIEMKQDYI--DIATKRIASVQ--PLGNIELTVLTGKRTEPR 287
G + R+F + ++ I ++ +R+ + E + E
Sbjct: 244 GHAVLELNKEDGGNRTFTLVTNNENQIGTNVCYERLYRINNGVGTKNEADFDWINKNEAY 303
Query: 288 VAFNLLVERGLIQPGQILTNAQGNISA 314
+ + + I + A
Sbjct: 304 LNNLNVYDLKYFDTNPIKIDNNEIKEA 330
>gi|225075555|ref|ZP_03718754.1| hypothetical protein NEIFLAOT_00568 [Neisseria flavescens
NRL30031/H210]
gi|224953100|gb|EEG34309.1| hypothetical protein NEIFLAOT_00568 [Neisseria flavescens
NRL30031/H210]
Length = 452
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR---- 245
+G++ + KL KP +L+ +L +ILD F GSGT+ +L
Sbjct: 204 NGTKEITELFEGKLFDFPKPSSLIKYLLQILHVSDGLILDFFSGSGTTAHAVMQLNAEDG 263
Query: 246 --RSFIGIEMKQDYIDIATKRIASVQ 269
R FI ++ ++ + + R A
Sbjct: 264 GSRRFICAQLPEETDEKSEARKAGFN 289
>gi|330942085|gb|EGH44750.1| site-specific DNA methyltransferase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 262
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ HPT KP L+ +L T G LDPF GSG++G A
Sbjct: 215 KTDTKGNNHPTVKPTDLMGYLLRLVTPLGGKTLDPFMGSGSTGKAA 260
>gi|150006231|ref|YP_001300975.1| putative N6-adeinine specific methyltransferase [Bacteroides
vulgatus ATCC 8482]
gi|149934655|gb|ABR41353.1| putative N6-adeinine specific methyltransferase [Bacteroides
vulgatus ATCC 8482]
Length = 881
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 35 LPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
LP SVD IF DPP+ N G L ++ +A+ + K S Y +
Sbjct: 484 LPNSSVDYIFIDPPFGANIMYSELNSIWEGWLKVTTNNKEEAIINKEQK-KSLFDYQSLM 542
Query: 86 RAWLLACRRVLKPNGTLWVIGS 107
RVLKP + + S
Sbjct: 543 YKSFKEFYRVLKPGKWITIEFS 564
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ T+ P + R ++ T+PGDI+ D F G+G +G A+
Sbjct: 132 AYHTKVPHPAIMRYILHYTQPGDIVFDGFCGTGMTGVAAQLCG 174
>gi|300871155|ref|YP_003786027.1| hypothetical protein BP951000_1543 [Brachyspira pilosicoli 95/1000]
gi|300688855|gb|ADK31526.1| hypothetical protein BP951000_1543 [Brachyspira pilosicoli 95/1000]
Length = 246
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 14/160 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I + ++ + + + VD +F DPPY+ +N + + A TD Y
Sbjct: 90 IFRADARKI--PIEDEKVDFVFIDPPYSTHINYSDEKNCIGKLTAKTD---------EYY 138
Query: 83 AFTRAWLLACRRVLKPNGTL--WVIGSYHNIFRIGTM-LQNLNFWILNDIVWRKSNPMPN 139
+ R++K + + +V SY + + + + + + +
Sbjct: 139 NAMEKVISEIFRIMKKDRYMALYVSDSYEKDYPFMPIGFKLFEIMSKYFMPIDIVSVVRH 198
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ 179
+ N H + I + + Y F D
Sbjct: 199 NKSLSKGNYHLSAIEYNYYLRGFNYLFIMYKQGNKTIDKN 238
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 193 ERLRNKDGEKLHP-TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ L++++ + H P ++ +L TK D+++DP GSGT+ VA++L R +G
Sbjct: 19 QYLKSEEEKHKHYIGATPSYIIWNLLNRYTKEKDLVVDPMAGSGTTVDVARELGRRALGY 78
Query: 252 EMKQDYID 259
++ ++
Sbjct: 79 DINPKALE 86
>gi|309791210|ref|ZP_07685742.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
trichoides DG6]
gi|308226772|gb|EFO80468.1| DNA methylase N-4/N-6 domain-containing protein [Oscillochloris
trichoides DG6]
Length = 365
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 36/91 (39%)
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
N + + R + + + ++L TK GD +LD F
Sbjct: 111 NLNRWKEYEDILTDSLWMIDRRDSSGVHTAGYWGNFIPQIPYQMLRRYTKRGDWVLDTFA 170
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
GSGT+ ++L R +GIE++ + A +
Sbjct: 171 GSGTTLIEGQRLGRHTLGIELQPRMVAHAKQ 201
>gi|110636124|ref|YP_676332.1| putative RNA methylase [Mesorhizobium sp. BNC1]
gi|110287108|gb|ABG65167.1| putative RNA methylase [Chelativorans sp. BNC1]
Length = 393
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 189 CSGSERLRNKDGEKLHPTQ--KPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR 245
R+ + + E +HP L +L +PG +LDPF GSGT+ +++
Sbjct: 34 WDFPNRIAHSEIEGVHPYPAKFVAELPRAVLECLPVQPGTAVLDPFCGSGTTLVESQRRG 93
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
+GI++ ++ ++++
Sbjct: 94 FRSVGIDLNPIACLMSRVKVSTAPETLEEA 123
>gi|166364448|ref|YP_001656721.1| putative methyltransferase [Microcystis aeruginosa NIES-843]
gi|166086821|dbj|BAG01529.1| putative methyltransferase [Microcystis aeruginosa NIES-843]
Length = 181
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 17 FEWKD--------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
W++ ++I+G+ ++ L L KS DLI+ DPPY L
Sbjct: 78 ENWRNLATSPQQFQVIRGDVLTKLATLAGKSFDLIYFDPPYESGL 122
>gi|302870553|ref|YP_003839190.1| DNA methylase N-4/N-6 domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302573412|gb|ADL49614.1| DNA methylase N-4/N-6 domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 334
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R R HP + A+ + + + T+PGD++LDP G GT+ A R GIE
Sbjct: 66 RGRYVPESVKHPARMLPAIAAHAIAAYTQPGDLVLDPMCGIGTTLVEAVHAGRDAFGIEY 125
Query: 254 KQDYIDIATKRIASVQ 269
+ + +IA I
Sbjct: 126 EPQWSNIADANIRHAH 141
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 23 IIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS-- 77
+I+G++ ++ +P V L+ PPY L RP V D ++
Sbjct: 151 VIRGDATRLMSLVPKALTGQVALVVTSPPYG-PTVHGLVRPGEHGVVKYDDRYNDGEDRG 209
Query: 78 FEAYDAFTR------AWLLACRRVLKPNGTLWV 104
AY T L C +L+P G + V
Sbjct: 210 NLAYRDLTGLADGFAQILAGCAALLRPGGVVVV 242
>gi|257059386|ref|YP_003137274.1| methyltransferase [Cyanothece sp. PCC 8802]
gi|256589552|gb|ACV00439.1| methyltransferase [Cyanothece sp. PCC 8802]
Length = 179
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
KII+G+ I+VL+ L +S D I+ DPPYN QL
Sbjct: 91 KIIRGDVINVLKTLAGQSFDRIYFDPPYNSQL 122
>gi|52550413|gb|AAU84262.1| modification methylase type II R/M system [uncultured archaeon
GZfos9C4]
Length = 410
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG 224
T ++ +D+ S RL G+ L+ L G
Sbjct: 23 TDTQRNIEILGDDLTFISVREFQRTKHVHRLHPYLGK------FIPQLVEVFLKRYFTEG 76
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
D +LDPF GSGT+ A L + +GIE+ + I + KR
Sbjct: 77 DTVLDPFAGSGTALIEANVLGMNSVGIELSPFNVLIQEVKAKKYNISEVEREIKDALKR 135
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 22 KIIKGNSISVLEKLPAK-SVDLIFADPPYNLQLNGQ---------LYRPDHSLVD-AVTD 70
KII+G++ + KLP +D IF PPY ++ P ++
Sbjct: 268 KIIQGDARKI--KLPEDFKIDGIFTSPPYVGIIDYHEQHRYAYELFGFPRQDELEIGPAA 325
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
S + Y L + ++++ +
Sbjct: 326 KGQNGKSKKEYQRGITEVFKNVSEYLIDDAKIFIVANDK 364
>gi|26553930|ref|NP_757864.1| ATP/GTP-binding protein [Mycoplasma penetrans HF-2]
gi|26453938|dbj|BAC44268.1| hypothetical ATP/GTP-binding protein [Mycoplasma penetrans HF-2]
Length = 407
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK--------KLRRSFIGIEMK 254
P KP L+ ++ + IILD F GSGT+G K R FI +
Sbjct: 243 FPNPKPVELIKFLINKHSNENAIILDFFAGSGTTGHAVMELNSDPKTKGNRKFILCTNE 301
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 8/86 (9%), Positives = 28/86 (32%)
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
L +++LK +G +++ + + ++ ++ +
Sbjct: 1 MMSERLKKAKQLLKDDGIIFISIDDNEQAYLKVLMDDIFGEDNFISNIVWDKRNAQNDNK 60
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYD 169
+ HE ++ S + K ++
Sbjct: 61 YIEKNHEYILAYSKNWKNFKINQVFE 86
>gi|325107710|ref|YP_004268778.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
5305]
gi|324967978|gb|ADY58756.1| DNA methylase N-4/N-6 domain protein [Planctomyces brasiliensis DSM
5305]
Length = 950
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 34 KLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
++P SVD +F DPP+ N+ + +A+ D K S Y
Sbjct: 520 RIPDNSVDYVFTDPPFGENIYYSDLNILIESWHGVQTAPEQEAIVDRV-KEKSLLDYQRM 578
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
+ R+LKP W+ +HN +V
Sbjct: 579 MSDCFVNYYRMLKPG--RWMTVEFHNSQNRVWNAIQEGLQHAGFVVADVR 626
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ T+ P + R L+ T PGDI+LD F G+G +G A+
Sbjct: 141 AYHTKVPHKAIMRYLLHYTMPGDIVLDGFCGTGMTGVAAQMCG 183
>gi|148655107|ref|YP_001275312.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus sp.
RS-1]
gi|148567217|gb|ABQ89362.1| DNA methylase N-4/N-6 domain protein [Roseiflexus sp. RS-1]
Length = 372
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
Q P L+ R T+ GD+++DPF GSGT+ ++L R IG+E+ ++ +
Sbjct: 156 QIPYQLMRR----YTRRGDLVIDPFAGSGTTLIEGRRLGRHTIGVELNPAVVEQTRATLM 211
Query: 267 SV 268
Sbjct: 212 HE 213
>gi|307637373|gb|ADN79823.1| putative type II DNA modification enzyme/methyl transferase
[Helicobacter pylori 908]
gi|325995966|gb|ADZ51371.1| putative type II DNA modification enzyme [Helicobacter pylori 2018]
gi|325997561|gb|ADZ49769.1| putative type II DNA modification enzyme/ methyl transferase
[Helicobacter pylori 2017]
Length = 322
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 26/186 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ G++ L K+ SV+LIF PPY Y+ +++ Y
Sbjct: 146 LLVGDNAQTLNKIAPSSVNLIFTSPPYYNARIYSDYK-----------------NYKDYL 188
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY-------HNIFRIGTMLQNLNFWILNDIVWRKSN 135
+ L AC RVL+ + + S + + IL D + +
Sbjct: 189 SAMSQSLKACFRVLEEGRFIIINVSPVITKRAGREFESVRYPIHFDFHQILIDNGFYFVD 248
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
+ + + + K GY N + + I +RL
Sbjct: 249 EILWIKPDFSVPN--RIGGYLQNKKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRL 306
Query: 196 RNKDGE 201
+
Sbjct: 307 KPIKQN 312
>gi|321311651|ref|YP_004203938.1| putative methyltransferase [Bacillus subtilis BSn5]
gi|320017925|gb|ADV92911.1| putative methyltransferase [Bacillus subtilis BSn5]
Length = 257
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
G+ + +++LP SVD+++ DP
Sbjct: 160 NGDCLEYIKQLPDNSVDVVYFDP 182
>gi|315651943|ref|ZP_07904945.1| type III restriction-modification system [Eubacterium saburreum DSM
3986]
gi|315485772|gb|EFU76152.1| type III restriction-modification system [Eubacterium saburreum DSM
3986]
Length = 254
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RS 247
L+ + + KP + + +++ +T+ I++D F GS T+ +L R
Sbjct: 8 ELKKIFEKNVFSYPKPVSFIEKVVRYTTEKDAIVMDFFSGSATTAHAVMQLNAEDGGHRK 67
Query: 248 FIGIEM 253
FI +++
Sbjct: 68 FIMVQL 73
>gi|291484603|dbj|BAI85678.1| hypothetical protein BSNT_03256 [Bacillus subtilis subsp. natto
BEST195]
Length = 257
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
G+ + +++LP SVD+++ DP
Sbjct: 160 NGDCLEYIKQLPDNSVDVVYFDP 182
>gi|169832321|ref|YP_001718303.1| DNA methylase N-4/N-6 domain-containing protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169639165|gb|ACA60671.1| DNA methylase N-4/N-6 domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 371
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 43/96 (44%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ + + + R + + + ++++ TK G++++DPF GSGT+
Sbjct: 122 KDYDEVFTDSLWNINRRDSSGAHLGWYWGNFIPQIPHQLMLRYTKKGELVVDPFLGSGTT 181
Query: 238 GAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
++L R +G+E+ + A + + + + N
Sbjct: 182 LIECRRLGRHGLGVELNPKTLHKARELVEAEENRHN 217
>gi|239831939|ref|ZP_04680268.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
intermedium LMG 3301]
gi|239824206|gb|EEQ95774.1| DNA methylase N-4/N-6 domain-containing protein [Ochrobactrum
intermedium LMG 3301]
Length = 399
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ P + + +K GD ++DPF G GT VA R +G+++ A
Sbjct: 22 YYAMFPTDFVRDAIARFSKVGDGVIDPFCGRGTVPFVASSTGRFAVGMDVNPVAWVYA 79
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 19/103 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY----NLQLN--------GQLYRPDHSLVDAVTD 70
I G++ L +L+ PPY N +L+ G L PD+ + D
Sbjct: 217 IELGDARQKLSSWKGSKFNLLVTSPPYCGVTNYRLDNWIRLWLLGDLPLPDNKSSEKYAD 276
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFR 113
E+Y + + + + + T+ V R
Sbjct: 277 R-------ESYRSMLMDVFSSAKMSMTESATVLVRTDSRLFTR 312
>gi|303252376|ref|ZP_07338542.1| hypothetical protein APP2_1352 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302648835|gb|EFL79025.1| hypothetical protein APP2_1352 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
Length = 315
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 14/111 (12%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAK------ 242
+G++ L+N GE KP L+SR L + +LD F GSGT+
Sbjct: 16 NGTQLLKNLFGEHRFTNPKPVGLISRFLQLGLYKNNQTVLDYFAGSGTTAHAVINLNRED 75
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
R +I +E +Y D ++P + K +P+V
Sbjct: 76 NGNRKYILVEQG-EYFDT------VLKPRVQKVIFAKEWKDGKPQVDNGAF 119
>gi|169838646|ref|ZP_02871834.1| Site-specific DNA-methyltransferase (adenine-specific) [candidate
division TM7 single-cell isolate TM7a]
Length = 284
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 192 SERLRNK-DGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKK----- 243
+ L+N E L KP L+ R++ ST GD+ILD F GSGT+ +
Sbjct: 34 NTELKNILKMESLFDYPKPTQLIKRLMQISTDTNNGDVILDFFAGSGTTAHAVDELNAED 93
Query: 244 -LRRSFIGIEM 253
R +I +++
Sbjct: 94 GGNRRWICVQL 104
>gi|67922819|ref|ZP_00516318.1| Conserved hypothetical protein 95 [Crocosphaera watsonii WH 8501]
gi|67855312|gb|EAM50572.1| Conserved hypothetical protein 95 [Crocosphaera watsonii WH 8501]
Length = 194
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
++IKG+ + VL+ L + DLI+ DPPY L
Sbjct: 91 RLIKGDILKVLKNLEGQQFDLIYFDPPYQSGL 122
>gi|253579249|ref|ZP_04856519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849347|gb|EES77307.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 203
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
+K D ILD F GSGT+ AK L R+ IG+++ + + ++ + + T
Sbjct: 3 YSKKKDWILDQFLGSGTTLIEAKLLGRNAIGVDINSEAVKLSNTNLNFTCQEKSKIFTKQ 62
Query: 280 TG 281
Sbjct: 63 GN 64
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 38/145 (26%), Gaps = 12/145 (8%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
L + +S+DLI PPY + P D +
Sbjct: 68 LSFIKDESIDLICTHPPYADIIRYSKEIPGDISHLKYKD----------FLQELEQVAKE 117
Query: 92 CRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
RVLK G ++IG + L + D ++ + + +
Sbjct: 118 SYRVLKKQGICAFMIGDIRKKGYVLP-LGMNSMQKFVDTGFKFKEIVIKEQHNCRSTDYW 176
Query: 151 TLIWASPSPKAKGYTFNYDALKAAN 175
A Y F + N
Sbjct: 177 EGKERKFLMLAHEYIFILEKADDHN 201
>gi|254167440|ref|ZP_04874292.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
gi|197623703|gb|EDY36266.1| DNA methylase domain protein [Aciduliprofundum boonei T469]
Length = 811
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 196 RNKDGEKLHP------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+ G K H KP A+ ++ TK DIILDPF G GT AK L RS
Sbjct: 449 KRNWGHKYHSLCSYQSKLKP-AIAHFLVKIFTKKDDIILDPFGGVGTIPLEAKLLNRSSY 507
Query: 250 GIEMKQDYIDIATKRIA 266
+++ +A ++
Sbjct: 508 MVDLSPTAYIVAKAKLE 524
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY--------NLQLNGQLYRPDHSLVD 66
S KII G++ + L + +D+I PP+ N + + S
Sbjct: 658 STKNVLSKIIYGDAFKI-SYLINRKIDVIITSPPFIHSTRFHTNNWIRNWFCGWEPSDFA 716
Query: 67 AVTDSW---DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
+ + + Y + W VLKPNG + + +
Sbjct: 717 KEKKKFVEVLQEKNLNIYTQLLKEWAK----VLKPNGLIIMHLGSTKECDM 763
>gi|190895421|ref|YP_001985713.1| hypothetical protein RHECIAT_PA0000104 [Rhizobium etli CIAT 652]
gi|190699366|gb|ACE93450.1| hypothetical protein RHECIAT_PA0000104 [Rhizobium etli CIAT 652]
Length = 419
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ +P L ++ + GD I DPF G G++ A A R I ++
Sbjct: 24 DISAIHWYPGSFAPGLPGVLVDLLSSEGDTIFDPFCGIGSTAAAAILRGRHSISCDINP 82
>gi|295108151|emb|CBL22104.1| DNA methylase./Putative RNA methylase family UPF0020. [Ruminococcus
obeum A2-162]
Length = 387
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 3/148 (2%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSG 235
D Q I E+ +P + E++ ++ + KPG I+DPF GSG
Sbjct: 8 DSQYNHLKEIDWDFLDEKQDEISSLHPYPARFIESIPRSLIDALGVKPGTSIMDPFCGSG 67
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
T+ AKK +G+++ I+ + Q +E+ R E + +
Sbjct: 68 TTLLEAKKRGIDSVGVDLNPIACLISKVKTQQAQVNL-VEVGNEICDRAETYCLKHGMEI 126
Query: 296 RGLIQPGQIL-TNAQGNISATVCADGTL 322
+ ++ Q +I A V +
Sbjct: 127 PNIPNLDHWFKSDIQKSIYALVTEINNI 154
>gi|269793097|ref|YP_003318001.1| DNA methylase N-4/N-6 domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100732|gb|ACZ19719.1| DNA methylase N-4/N-6 domain protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 1068
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 38 KSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
+SVD IF DPP+ L L ++ +A+T+ + Y
Sbjct: 606 ESVDYIFTDPPFGGNLMYSELNFLWEAWLKVFTNNKPEAITNET-QGKGLPEYQRLMTEC 664
Query: 89 LLACRRVLKPNGTLWVIGSYHNI 111
RVLKP W+ +HN
Sbjct: 665 FKEYYRVLKPG--RWMTVEFHNS 685
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 196 RNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+N H T+ P + R ++ T+PGD++ D F G+G +G A+
Sbjct: 164 KNDPIYNAHSYHTKVPHKAIMRYILHYTEPGDVVFDGFCGTGMTGVAAQLCG 215
>gi|118575798|ref|YP_875541.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
gi|118194319|gb|ABK77237.1| adenine specific DNA methylase [Cenarchaeum symbiosum A]
Length = 585
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADP------PYNLQLNGQLYRPDHSLVDA-----VTD 70
++ + L +P SVD I DP PY ++L+ S DA ++D
Sbjct: 358 LLLNADCYRTLSSMPGGSVDYIITDPPHGDRLPY-MELSAMWNGWMGSSADAEEELVISD 416
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
S ++ + AY+A L RVL+P L ++ +
Sbjct: 417 SPERDKTPAAYNAQMARILSEAERVLRPGRHLTIMFN 453
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+KP ++ + ++PG+I+LDPF GSG S + L R IGI++ + I
Sbjct: 73 KKPFNVVRSYIKEYSRPGEIVLDPFCGSGISNTESLVLGRRTIGIDINPMAVFIT 127
>gi|188997625|ref|YP_001931876.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932692|gb|ACD67322.1| DNA methylase N-4/N-6 domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 524
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 11/137 (8%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSST- 221
YD N+ + +W + SE R K ++HP + L+ L S T
Sbjct: 56 KEYYDKTYKINQQKEENINWSLSFAEYSEAERTKHVHRIHPYKGKFIPQLVEYFLDSHTD 115
Query: 222 --------KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
K GDI+LDPF GSGT+ A +L +G+++ Q + ++ ++
Sbjct: 116 SFKKEVYFKAGDIVLDPFCGSGTTLVQANELGIHAVGVDISQFNVMLSNVKVRKHDLTSI 175
Query: 274 IELTVLTGKRTEPRVAF 290
+ + E
Sbjct: 176 AKTIKELTLKLENYQNN 192
>gi|153874051|ref|ZP_02002414.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152069485|gb|EDN67586.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 395
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++ L Q L+ ++ KP ++ DPF GSGT K +G E+
Sbjct: 12 KSISNPFLWRGQFTPELIDYLIDIHAKPHFLVGDPFSGSGTVLLECSKRGIDAMGCEINP 71
Query: 256 ------DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFN-------LLVERGLIQPG 302
+ +I + L L++ + K+ E + L + LI+
Sbjct: 72 SAYAMSKFFEIGILSFSEKWQLCQEILSLTSLKKLETSQVYQKEFASNYALAYQNLIRLA 131
Query: 303 QILTN 307
+ + +
Sbjct: 132 EKILD 136
>gi|288575100|ref|ZP_06393457.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570841|gb|EFC92398.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 948
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPE 210
+ + P F + E P + +N H T+ P
Sbjct: 86 PYYTACPNPWIGQFIEEWESQKPEKPADYHYHREPFAADVSEGKNDPIYNAHSYHTKVPH 145
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ R ++ T+PGDI+ D F G+G +G A+
Sbjct: 146 KAIMRYILHYTEPGDIVFDGFCGTGMTGVAAQMCG 180
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 37 AKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
SVD IF DPP+ LN L ++ +A+ +S + Y
Sbjct: 519 NNSVDYIFTDPPFGANLNYSELSFIWESWLKVWTNNKPEAIENSV-QGKGATEYRNLMAG 577
Query: 88 WLLACRRVLKPNGTLWVIGS 107
RVLKP + V S
Sbjct: 578 CFKEAYRVLKPGRWMTVEFS 597
>gi|117928022|ref|YP_872573.1| hypothetical protein Acel_0814 [Acidothermus cellulolyticus 11B]
gi|117648485|gb|ABK52587.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B]
Length = 992
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 35 LPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
LP S+D IF DPP+ N + ++ +A+ D K Y
Sbjct: 546 LPDNSIDYIFTDPPFGENIYYADLNFLVESWHRVLTNATPEAIVDKAKK-KGLPEYQHLM 604
Query: 86 RAWLLACRRVLKPNGTLWVIG 106
R RVLKP + V+
Sbjct: 605 RQCFAEYCRVLKPGRWMTVVF 625
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 196 RNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ K H T+ P + ++ T+PGD++LD F GSG + A
Sbjct: 163 KTDPLYKAHSYHTKVPHLAIVPSILHYTEPGDVVLDGFCGSGMTSVAA 210
>gi|256752456|ref|ZP_05493314.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|256748658|gb|EEU61704.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
ethanolicus CCSD1]
Length = 849
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDA 67
+ +I S + L +P+ +D IF DPP+ N L ++ +A
Sbjct: 437 INISNCLIMTQSTNELSNIPSNFIDYIFTDPPFGDNLMYSELNFLWESWLKVFTNNRTEA 496
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ + + Y R+LKP + V+
Sbjct: 497 IINKT-QRKGLNEYQELMEKAFSEMYRILKPGRWMTVVF 534
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPE 210
+ P F K E+ + P + +N H T+ P
Sbjct: 32 PHYTACPNPFISEFIEKYGKPYEEEKDDYNCE--PYTADVSEGKNDPIYNAHSYHTKVPH 89
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ R ++ TKPGDI+ D F G+G +G A+
Sbjct: 90 KAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQMCG 124
>gi|119509095|ref|ZP_01628246.1| hypothetical protein N9414_04820 [Nodularia spumigena CCY9414]
gi|119466261|gb|EAW47147.1| hypothetical protein N9414_04820 [Nodularia spumigena CCY9414]
Length = 423
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 3/130 (2%)
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPT--QKPEALLSRILVSSTKPGDIILDPFFGSGT 236
Q SD+ + + + NK + Q L+ +L+ ILDPF GSGT
Sbjct: 18 QHLSDFNVVLPQNHLNIENKTRSNIFSWRGQFSPQLIENLLLYYCPKQAKILDPFAGSGT 77
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIAT-KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
+ A + G E+ ++ ++ +++ L + ++ E L +
Sbjct: 78 TLYEAACFGLTVSGCEVNPSAWILSRTYQLMNLELSTRERLVISITEKLETYFPKPNLFD 137
Query: 296 RGLIQPGQIL 305
+ ++
Sbjct: 138 NSHPRKLSVI 147
>gi|282890359|ref|ZP_06298887.1| hypothetical protein pah_c016o076 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499741|gb|EFB42032.1| hypothetical protein pah_c016o076 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 475
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-QLYRPDHSLVDAVTDS 71
QN E K+I+ ++ L +P S+DL+ PPY + R + + V
Sbjct: 265 QNQSKESLAKLIQSDAR-TLAGVPDNSIDLVITSPPYANNYDYADATRLEMTFWGEVASW 323
Query: 72 WDKFSSFEAYD 82
D + Y
Sbjct: 324 GDLHETVRQYL 334
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
++LDPF GSGT VA KL GIE + +++ + + N E+ + KR
Sbjct: 103 VVLDPFVGSGTVCVVADKLGIHSYGIESHPFVYRLGNGKLSWDENIENFEVAINDLKRLA 162
Query: 286 PRV 288
+
Sbjct: 163 IEL 165
>gi|313667099|gb|ADR72995.1| M2.BsrI [Geobacillus stearothermophilus]
Length = 389
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
+ K+ + FE++ KII ++ +++ + ++S+D+I PPY + LY
Sbjct: 201 FAIKDKILSFSQMVKDFEYETKIISNDARNLI-DIRSESIDIIITSPPYANTYDYYLYHK 259
Query: 61 DHSLVDAVTDSWDKF-------------SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
+ E + L RV+K + ++I
Sbjct: 260 HRMNWLGYNFKETQNIEIGSRNEYSSKKQKPEKWKHDLMLVLQEMYRVMKKDRLCFIIIG 319
Query: 108 YHNIFR 113
I +
Sbjct: 320 DSVINK 325
Score = 42.7 bits (99), Expect = 0.090, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 33/80 (41%)
Query: 198 KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G +P + P + ++L K ++LDPF GSGT+ A +G ++
Sbjct: 24 NHGIHSYPAKFPPQIPGKLLDKFAKDNYVVLDPFCGSGTTLVEASLRNLDSVGNDINPIA 83
Query: 258 IDIATKRIASVQPLGNIELT 277
+ I+T + EL
Sbjct: 84 LLISTVKTTKYFDTDFEELE 103
>gi|330467160|ref|YP_004404903.1| DNA methylase n-4/n-6 domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328810131|gb|AEB44303.1| DNA methylase n-4/n-6 domain protein [Verrucosispora maris
AB-18-032]
Length = 247
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
L + + S T PGD++ DP GSGT+ A L R +GI+++ +
Sbjct: 5 LAAHAISSYTAPGDLVFDPMCGSGTTLIEAMHLGRHGLGIDIEPRF 50
>gi|148927652|ref|ZP_01811108.1| type III restriction-modification system methylation subunit
[candidate division TM7 genomosp. GTL1]
gi|147887001|gb|EDK72513.1| type III restriction-modification system methylation subunit
[candidate division TM7 genomosp. GTL1]
Length = 299
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------L 244
G++ + L K L+ +L ++LD F GSGT+ +
Sbjct: 51 GTKEVMELFEGALFDNPKSVRLMKYLLEFGCDEDGLVLDFFSGSGTTAHAVSQLNAEDGG 110
Query: 245 RRSFIGIEM------KQDYI--------DIATKRIASVQPLGNIELTVLTGKRTEP 286
R +I +++ K + D+ +RI + +R P
Sbjct: 111 NRRWICVQLPELTSEKTEAYKAGYTVISDLTRERIRRASNKIKEDFADQLAERKVP 166
>gi|323704525|ref|ZP_08116103.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535987|gb|EGB25760.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 854
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWD 73
+ G++I+ L + SVD IF DPP+ N L ++ +A+ +
Sbjct: 450 LYLGSTINTL--IKPNSVDYIFTDPPFGDNLMYSELNFLWESWLKVFTNNKTEAIINKTQ 507
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
K Y R+LKP + V
Sbjct: 508 K-KGLHEYQELMEKCFSEMYRILKPGRWMTV 537
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGS 234
D + P + +N H T+ P + R ++ TKPGDI+ D F G+
Sbjct: 54 DEETDDYKCEPYAADVSEGKNDPIYNAHSYHTKVPHKAIMRYILHYTKPGDIVFDGFCGT 113
Query: 235 GTSGAVAKKLR 245
G +G A+
Sbjct: 114 GMTGVAAQMCG 124
>gi|77163606|ref|YP_342131.1| hypothetical protein Noc_0059 [Nitrosococcus oceani ATCC 19707]
gi|254435024|ref|ZP_05048531.1| hypothetical protein NOC27_2087 [Nitrosococcus oceani AFC27]
gi|76881920|gb|ABA56601.1| hypothetical protein Noc_0059 [Nitrosococcus oceani ATCC 19707]
gi|207088135|gb|EDZ65407.1| hypothetical protein NOC27_2087 [Nitrosococcus oceani AFC27]
Length = 947
Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPE 210
+ + P F + E + P + +N H T+ P
Sbjct: 87 PYYTACPNPWIADFITEWEAQKPEQPEGYHYHREPFAADVSEGKNDPIYNAHSYHTKVPH 146
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ R ++ T+PGDI+ D F G+G +G A+
Sbjct: 147 KAIMRYILHYTEPGDIVFDGFCGTGMTGVAAQMCG 181
Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 32/138 (23%)
Query: 2 SQKNSLAINENQ-NSIFEW------KDKI-IKGNSISVLEKLPAKSV----DLIFADPPY 49
S+ N + + + + N + ++ ++++ I I + S+ D +F DPP+
Sbjct: 475 SEGNMIPVYKKKLNQLVQFYKVKSHRNRVAI----IQTMSSTVESSIEAGLDYVFIDPPF 530
Query: 50 NLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
LN L ++ +A+ + + + Y + LKP
Sbjct: 531 GANLNYSELNSIWEAWLKVSTNNAEEAIENR-SQNKGIDEYRSLMTQCFRQAYNQLKPGR 589
Query: 101 TLWVIGS------YHNIF 112
+ V S ++NI
Sbjct: 590 WMTVEFSNTSAGIWNNIQ 607
>gi|330892363|gb|EGH25024.1| site-specific DNA-methyltransferase (adenine-specific) [Pseudomonas
syringae pv. mori str. 301020]
Length = 358
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 191 GSERLR-NKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAV 240
G + L+ DGE T KP L+ R++ S GDI+LD F GSGT+GA
Sbjct: 109 GVKELKATFDGEVPFDTVKPTELIKRMMKVSGVNEGDIVLDFFAGSGTTGAA 160
>gi|199598291|ref|ZP_03211711.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus HN001]
gi|199590744|gb|EDY98830.1| Adenine specific DNA methylase Mod [Lactobacillus rhamnosus HN001]
Length = 391
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 13/134 (9%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
DG T KP L+ R L +LD F GS T+ +L +
Sbjct: 124 DGVSPFGTPKPVELIKRFLELQNDDDATVLDFFAGSSTTAEAVMQLN------------V 171
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ R + L + + P E G ++ + +
Sbjct: 172 EDGGHRKFIMAQLPEKTYHINKNGKEVPTKGGKAAYESGFKSIDEVSRERIRRAAKKIRE 231
Query: 319 DGTLIS-GTELGSI 331
D L GS
Sbjct: 232 DNELTLPEDFDGSF 245
>gi|240139364|ref|YP_002963839.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Methylobacterium extorquens AM1]
gi|240009336|gb|ACS40562.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Methylobacterium extorquens AM1]
Length = 709
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYN 50
I G++ L +P S+DL+ DPPY
Sbjct: 466 IRCGDAAD-LSHIPEGSIDLVLTDPPYF 492
>gi|78044466|ref|YP_361025.1| putative DNA methylase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996581|gb|ABB15480.1| putative DNA methylase [Carboxydothermus hydrogenoformans Z-2901]
Length = 329
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ I++ +K G+++LD F GSGT+ AK L+R IG+++ + + + K
Sbjct: 126 IPRNIILRYSKEGEVVLDQFVGSGTTLVEAKLLKRKGIGVDINPEAVSLTLKNTNF 181
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 41/148 (27%), Gaps = 28/148 (18%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
G++ + L L +S+DLI PPY N+ D S D +
Sbjct: 194 GDARN-LYFLKDESIDLICTHPPYSNIIKYSDNIEGDLSHFDVND-----------FLLE 241
Query: 85 TRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILN-----DIVWRKSNPMP 138
C RVLK +IG I + ++ + K
Sbjct: 242 MEKVAKECYRVLKKGKFCAILIGDTRRKGYIIPIGFSVMEIFRKIGFKLKEIIIKEQHNC 301
Query: 139 NFRGRRFQN---------AHETLIWASP 157
+ G AHE L
Sbjct: 302 SSTGYWRNQSIKYNFLLIAHEYLFVFKK 329
>gi|145633548|ref|ZP_01789276.1| predicted methyltransferase [Haemophilus influenzae 3655]
gi|145635332|ref|ZP_01791035.1| predicted methyltransferase [Haemophilus influenzae PittAA]
gi|229845728|ref|ZP_04465849.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
6P18H1]
gi|144985754|gb|EDJ92368.1| predicted methyltransferase [Haemophilus influenzae 3655]
gi|145267476|gb|EDK07477.1| predicted methyltransferase [Haemophilus influenzae PittAA]
gi|229811341|gb|EEP47049.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
6P18H1]
Length = 711
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIFADPP S + DSWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFADPP------------TFSNSKRMEDSWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELGLSAIE--ISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|110004866|emb|CAK99199.1| hypothetical adenine-specific dna methyltransferase c-terminal
truncated protein [Spiroplasma citri]
Length = 196
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 39/226 (17%)
Query: 39 SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
D+I A PPYN+ + + + Y +T+ W+ C L
Sbjct: 6 KFDVIIAGPPYNIGKDFGNNI--------------DYMELKKYINWTKKWIKLCLNFLSD 51
Query: 99 NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPS 158
NG L++ G + RI L K++P N +Q +HE ++
Sbjct: 52 NGLLYIYGFSEILARIVAQFPIEKQRFLIWHYTNKTSPSSN----FWQRSHEAILCLWKD 107
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILV 218
+ + ++ +G ER+ K T + ++
Sbjct: 108 QRPNLEI----------DQIREPYTDSYMKLNGKERMNTKGRFGTKTT------IYKVNE 151
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
P D+I P +GT +R F+ + + KR
Sbjct: 152 KGALPRDVIKIPALAAGTGMV-----KRHFMCKDCNNKLYYSSEKR 192
>gi|302391685|ref|YP_003827505.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
5501]
gi|302203762|gb|ADL12440.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
5501]
Length = 369
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ P ++++ + ++ GD ILDPF G GTS L R +GIE+
Sbjct: 24 YYAMFPLEFAAKVITNHSEKGDWILDPFLGRGTSVYAGSILERKGLGIEINP 75
>gi|254169106|ref|ZP_04875943.1| hypothetical protein ABOONEI_48 [Aciduliprofundum boonei T469]
gi|197621945|gb|EDY34523.1| hypothetical protein ABOONEI_48 [Aciduliprofundum boonei T469]
Length = 273
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K H P + + ++ TK G+ +LD F G GT+ AK+L R+ IGIE+ ++ ++A
Sbjct: 53 KYHGNFIP-QIPRQAMLRFTKRGEWVLDTFAGLGTTLIEAKRLGRNAIGIEIDENTANMA 111
Query: 262 TKRIASVQPLGNIE--LTVLTGKRTEPRVAF 290
+ I + N+ + + + E
Sbjct: 112 KELIEQEENPYNVYTDIIIGDSTKEEIYEDL 142
>gi|297617451|ref|YP_003702610.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
DSM 12680]
gi|297145288|gb|ADI02045.1| DNA methylase N-4/N-6 domain protein [Syntrophothermus lipocalidus
DSM 12680]
Length = 879
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 34 KLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+P +D IF DPP+ L L ++ +AV + + Y
Sbjct: 484 SIPKNYIDYIFTDPPFGGNLMYSELNFLWEAWLRVFTNNKPEAVENK-AQGKGPREYQEL 542
Query: 85 TRAWLLACRRVLKPNGTLWVIG 106
RVLKP + V+
Sbjct: 543 MEKCFAEYYRVLKPGRWMTVVF 564
Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
+ ++ D P + +N H T+ P + R +
Sbjct: 63 CPNPFIEDFIKEHGKPYDPDNDDYRRQPFAADVSEGKNDPIYNAHSYHTKVPHRAIMRYI 122
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ T+PGDI+ D F G+G +G A
Sbjct: 123 LHYTEPGDIVFDGFCGTGMTGVAASLCG 150
>gi|319936303|ref|ZP_08010720.1| modification methylase [Coprobacillus sp. 29_1]
gi|319808629|gb|EFW05177.1| modification methylase [Coprobacillus sp. 29_1]
Length = 489
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 15/142 (10%)
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ T+ +++ D+ A + SD L R +
Sbjct: 53 HKRITGTIEDYKKI-ESRYNVIYPDSPNATYTSLLNYSDDLNKPFQRWYRYKE------- 104
Query: 205 PTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
L+ +++ K +ILDPF GSG++ AK++ S +G E+ +A
Sbjct: 105 --GYSVELVEQLINEYCCKKKGVILDPFSGSGSTLLAAKEMGYSSVGFEVNPFSFFLAQC 162
Query: 264 RIASVQPLGNIELTVLTGKRTE 285
++ + + EL K E
Sbjct: 163 KLDTY----DKELIDQFKKSYE 180
>gi|257438353|ref|ZP_05614108.1| adenine specific DNA methylase [Faecalibacterium prausnitzii
A2-165]
gi|257199184|gb|EEU97468.1| adenine specific DNA methylase [Faecalibacterium prausnitzii
A2-165]
Length = 162
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLP---AKSVDLIFA 45
+ ++ S ++ II G+++ L+ L V I+
Sbjct: 72 LERQYSFDEQGQHTENNGSENMIIHGDNLEALKALLPQYEGKVKCIYI 119
>gi|91200064|emb|CAJ73107.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 266
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
LR ++ + + P ++ +L T+PGD+++DP G+GT+ VAK+L R +G ++
Sbjct: 21 LREQEHAQNYKGATPSYIIWNLLQRYTRPGDVVIDPMCGAGTTLDVAKELNREALGFDLN 80
Query: 255 QDYIDI--ATKRIASVQPLGNIELTVLTGKRTE 285
DI A R ++ + + T
Sbjct: 81 PTRKDIKQADARKIPIEKATADFVFIDPPYSTH 113
>gi|207094033|ref|ZP_03241820.1| putative type III restriction enzyme M protein [Helicobacter pylori
HPKX_438_AG0C1]
Length = 37
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ST D++LD F SGT+ AVA K++R +IGIE
Sbjct: 3 KNSTNENDLVLDFFARSGTTCAVAHKMKRHYIGIE 37
>gi|78188310|ref|YP_378648.1| type II DNA modification methyltransferase M.TdeIII [Chlorobium
chlorochromatii CaD3]
gi|78170509|gb|ABB27605.1| type II DNA modification methyltransferase M.TdeIII [Chlorobium
chlorochromatii CaD3]
Length = 530
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 56/179 (31%), Gaps = 12/179 (6%)
Query: 106 GSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY- 164
S N L V + GR + H S Y
Sbjct: 3 MSMRNDLLTIAEASQWASNYLGKQVTTSNIAYLIQYGRVKKFGHNGSTKISKEHLCNYYA 62
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSSTK 222
T N + E + +W + E K +LHP + L+ L T
Sbjct: 63 TINRQREHSWKEQLGSDLNWSLSFDQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDDHTD 122
Query: 223 ---------PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
GDI+LDPF GSGT+ + +L IGI++ I +I+S
Sbjct: 123 DFKQQMYFTKGDIVLDPFSGSGTTIVQSNELDIHAIGIDVSAFNTLIGNCKISSYNLKD 181
>gi|42526421|ref|NP_971519.1| type II DNA modification methyltransferase M.TdeIII [Treponema
denticola ATCC 35405]
gi|41816614|gb|AAS11400.1| type II DNA modification methyltransferase M.TdeIII [Treponema
denticola ATCC 35405]
Length = 535
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 120 NLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY-DALKAANEDV 178
+ +L V + GR + H S + Y E +
Sbjct: 22 HWATVLLGKHVTNSNITYLIQYGRINKFFHNGAPAVSKTELLHYYQSRSGKRQTDWEETL 81
Query: 179 QMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSSTK---------PGDII 227
+ +W + E K +LHP + L+ L T GD++
Sbjct: 82 GEKLNWTLSFEQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDEHTDSFKQNVFFHKGDVV 141
Query: 228 LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
LDPF GSGT+ A +L IG+++ + IA +I +
Sbjct: 142 LDPFCGSGTTLVQANELGIHAIGVDISEFNTVIANAKIQNCDLQMLE 188
>gi|254168572|ref|ZP_04875415.1| hypothetical protein ABOONEI_1264 [Aciduliprofundum boonei T469]
gi|197622406|gb|EDY34978.1| hypothetical protein ABOONEI_1264 [Aciduliprofundum boonei T469]
Length = 273
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K H P + + ++ TK G+ +LD F G GT+ AK+L R+ IGIE+ ++ ++A
Sbjct: 53 KYHGNFIP-QIPRQAMLRFTKRGEWVLDTFAGLGTTLIEAKRLGRNAIGIEIDENTANMA 111
Query: 262 TKRIASVQPLGNIE--LTVLTGKRTEPRVAF 290
+ I + N+ + + + E
Sbjct: 112 RELIEQEENPYNVYTDIIIGDSTKEETYEDL 142
>gi|156740418|ref|YP_001430547.1| DNA methylase N-4/N-6 domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156231746|gb|ABU56529.1| DNA methylase N-4/N-6 domain protein [Roseiflexus castenholzii DSM
13941]
Length = 1028
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 22 KIIKGNSISVLEKLPA---KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
++ + L L + V I+ DPPYN + LY+ +
Sbjct: 470 LLVHSENWQALNLLQEKYRERVKCIYIDPPYNTGNDEFLYKDSYQ--------------H 515
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ + L L+ G L++ + MLQ+
Sbjct: 516 SCWLSMMSQRLSLSSSYLESQGCLFISIDDIEFPALRYMLQH 557
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKKLR------RS 247
L N G+++ KP L+ + + D++LD F GSGT+G L R
Sbjct: 729 LDNILGQRVLLYPKPVELIESLARQTLMNEADVVLDYFAGSGTTGHAVINLNRKDGGRRK 788
Query: 248 FIGIEMKQDYIDIATKRIAS 267
FI +EM Q + + RI
Sbjct: 789 FILVEMAQYFDTVLLPRIKK 808
>gi|326336166|ref|ZP_08202338.1| type I restriction enzyme R protein [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691675|gb|EGD33642.1| type I restriction enzyme R protein [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 745
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ G + T++ ++ + + TKP D+ILDPF GSG + A L R I I++
Sbjct: 194 TKRHFGVHGYFTKQSWDVVQQYIKHFTKPNDVILDPFGGSGVTAIEAIMLGRKGINIDIN 253
Query: 255 QDYI 258
I
Sbjct: 254 PLAI 257
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 12 NQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG-----------QLYRP 60
N+++I +IIKG S + L + S+D I+ DPPY ++ L
Sbjct: 420 NESTINNL--QIIKG-SATHLSTIEDLSIDYIYTDPPYGDKIPYLDLSVMWNAWLDLPIT 476
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ + + + + Y + RVLK + L + S+ + +
Sbjct: 477 EEDRKEEAIEGGSLHKTKDEYSDLLSQSIKEMYRVLKFDRWLSFVFSHKDPHYWHII 533
>gi|39841595|gb|AAR31202.1| unknown [Burkholderia pseudomallei 1026b]
Length = 70
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ G+S L + S LI PPY + + + + ++ A+
Sbjct: 8 QVVHGDSRD-LSFMEDGSASLIVTSPPYWDKADYGDIHSN----------IGRRDTYVAF 56
Query: 82 DAFTRAWLLACRR 94
R C R
Sbjct: 57 LDNMRDVFRECLR 69
>gi|332827400|gb|EGK00152.1| hypothetical protein HMPREF9455_03484 [Dysgonomonas gadei ATCC
BAA-286]
Length = 377
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ T P + ++L K D++ DPF G GT+ A+ L S G++ IA
Sbjct: 25 YFTMFPLSFPYKVLR-YAKKTDLVYDPFCGRGTTNFAARLLGMSSYGVDSNPIAQAIAQA 83
Query: 264 RIASVQPLG 272
++ P+
Sbjct: 84 KLIHANPID 92
>gi|145637602|ref|ZP_01793258.1| Adenine specific DNA methylase Mod [Haemophilus influenzae PittHH]
gi|145269199|gb|EDK09146.1| Adenine specific DNA methylase Mod [Haemophilus influenzae PittHH]
Length = 523
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
+ S ++ L + G +KP L+ ++ T+ D+ILD F GSGT+
Sbjct: 242 KKEMIGTYWDFVSETKNLTKEGGVPYPNGKKPMKLIKQLAYMVTEENDLILDFFAGSGTT 301
Query: 238 GAVAK------KLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
G R FI +++ + +D A R+ L + + P
Sbjct: 302 GHSIMHLNTEDLGNRQFILVQIN-ENLDSALSRMTGEAKKALENLLNILDEVGRPH 356
>gi|17546630|ref|NP_520032.1| DNA-methyltransferase [Ralstonia solanacearum GMI1000]
gi|17428929|emb|CAD15613.1| putative dna-methyltransferase protein [Ralstonia solanacearum
GMI1000]
Length = 119
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
G+ + + K +KP L ++ T G ++ DPF GS AK+ R +
Sbjct: 11 WWGNGQTDRRCLPKRDMAEKPIGLAREVMYLVTT-GSVVCDPFAGSRALLVAAKEARHQW 69
Query: 249 IGIEMKQDYIDIATKRIA 266
+G E+ +DIA R+
Sbjct: 70 MGCELWLVNLDIAMARVE 87
>gi|269928743|ref|YP_003321064.1| hypothetical protein Sthe_2829 [Sphaerobacter thermophilus DSM
20745]
gi|269788100|gb|ACZ40242.1| protein of unknown function DUF1156 [Sphaerobacter thermophilus DSM
20745]
Length = 984
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 34/180 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY--NLQL----NGQLYRPDHSLVDAV-------- 68
I +G++ L + SV L+ DPPY N+Q + ++ D
Sbjct: 537 ITQGDAAD-LSTVATGSVHLVCIDPPYYDNVQYSELSDFFYVWLKRTVGDLYPDWFRAEL 595
Query: 69 TDSWD-------KFSSF---------EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
TD D +F+ F + Y+ A C RVL+P+G L V+ ++ +
Sbjct: 596 TDKDDEAVANPARFADFGRKRRDLARQDYERKMAAIFRECHRVLRPDGVLTVMFTHKQVE 655
Query: 113 RIGTM---LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
T+ L F I + + ++ A L+ + D
Sbjct: 656 AWDTLAMALIAAGFRIEASWPIHTESEHSLHQAKKNAAASTILLVCRKRQAVGEPVWWED 715
>gi|21232872|ref|NP_638789.1| hypothetical protein XCC3443 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767057|ref|YP_241819.1| hypothetical protein XC_0721 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21114702|gb|AAM42713.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572389|gb|AAY47799.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 354
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + + PG + DPF G G++ A R G+E+ +A +R+
Sbjct: 42 MRPFVRHFSAPGQQVFDPFCGFGSTLLAAALEGRQAHGMEVDPARAVVARERLRRHA 98
>gi|218960512|ref|YP_001740287.1| DNA adenine modification methylase [Candidatus Cloacamonas
acidaminovorans]
gi|167729169|emb|CAO80080.1| DNA adenine modification methylase [Candidatus Cloacamonas
acidaminovorans]
Length = 382
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 40/100 (40%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
+ + + +R + + + ++++ TK D +LD
Sbjct: 124 NDINLHRWKEYDDILTDSLWLFDKRNTSGAHLGWYWGNFIPQIPHQMMLRYTKKDDWVLD 183
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
F GSGT+ +K+L R+ IGIE+ + + A K I
Sbjct: 184 TFLGSGTTLIESKRLGRNGIGIELNAEVANKAEKLIQMEA 223
>gi|152978566|ref|YP_001344195.1| 23S rRNA m(2)G2445 methyltransferase [Actinobacillus succinogenes
130Z]
gi|229560163|sp|A6VMR3|RLML_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|150840289|gb|ABR74260.1| putative RNA methylase [Actinobacillus succinogenes 130Z]
Length = 676
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + K+I+ + + L + K DLIF DPP S + DSWD
Sbjct: 557 NDVDGKRHKLIQADCLQWLMRC-DKQFDLIFVDPP------------TFSNSKRMEDSWD 603
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+PNGT+ +
Sbjct: 604 VQRDH-------IKLMKNLKRILRPNGTIVFSNNKR 632
>gi|315924272|ref|ZP_07920496.1| protein-(glutamine-N5) methyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622433|gb|EFV02390.1| protein-(glutamine-N5) methyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 283
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 6/124 (4%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K +LAI ++ + ++I G+ L LP + D+I +PPY + +
Sbjct: 151 SKEALAIAKSNAQKHHIEAQLILGDLFEGL--LPGQRFDMIVTNPPY-IPTDEIADLSPD 207
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ D YD F + + LK G L + ++ + M + +
Sbjct: 208 IKNYEPRVALDGGED--GYD-FYKRLFASVHDHLKEQGYLVLECGWNQADTLIDMAHSFS 264
Query: 123 FWIL 126
Sbjct: 265 HIER 268
>gi|116327816|ref|YP_797536.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116331372|ref|YP_801090.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116120560|gb|ABJ78603.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116125061|gb|ABJ76332.1| DNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 383
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 4/138 (2%)
Query: 32 LEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LE + DL+ PP+ N + + L + FS+ +A+ F R
Sbjct: 240 LESMEDGIADLVVTSPPFLDKVNYEEDNWLRYWFLDIELPDHKKPSIFSTLDAWMEFIRE 299
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L RVLK NG + L + N + +
Sbjct: 300 TLKELSRVLKSNGVCVMEVGDIKKGSAVFNLDEYVIQAASASGLEWETTFINDQKFTKLS 359
Query: 148 AHETLIWASPSPKAKGYT 165
+ +
Sbjct: 360 NCWNVSNNEKGTNSNRCV 377
>gi|118575884|ref|YP_875627.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194405|gb|ABK77323.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 464
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
KI G+S +L+ +P S DL+ PPY + + + SW
Sbjct: 258 KIHAGDSRKLLDYVPRGSADLVITSPPYLNNYDYADRTRLETYFLGLYGSW 308
>gi|114320695|ref|YP_742378.1| DNA methylase N-4/N-6 domain-containing protein [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227089|gb|ABI56888.1| DNA methylase N-4/N-6 domain protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 1077
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 15/173 (8%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
SV + + DPPYN +L+ S D++ + + + L + L+
Sbjct: 504 GSVHVSYIDPPYNTELD------RQSGKFIYKDNYAR----STWASLMADRLQSGASFLR 553
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+GT + + +L ++ + + H + +
Sbjct: 554 EDGTFICSIDDNEYPTLREILNSVYGGDNFIGTIAWKSRDSVSSDHKISLNHNYHVAYAK 613
Query: 158 SPKAKGYTFNY-DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
A + + +N D R W ++ GE +P + P
Sbjct: 614 DLVANKFGGFPLNPGDYSNPDNDPRGPWKPVPIDANK----PGGETKYPIENP 662
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLR---- 245
G+ ++ + G K+ KP L+ ++ S ++ D F GSGT+G L
Sbjct: 733 GTRQVMSLFGNKVFSYPKPVGLMRDLIRISHLNSNCVVADYFAGSGTTGHAIVNLNRADG 792
Query: 246 --RSFIGIEMKQDYIDIATKRIAS 267
R F+ +EM + + R+
Sbjct: 793 SRRKFLLMEMGDYFDAVLLPRLKK 816
>gi|289595716|ref|YP_003482412.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
gi|289533503|gb|ADD07850.1| DNA methylase N-4/N-6 domain protein [Aciduliprofundum boonei T469]
Length = 257
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K H P + + ++ TK G+ +LD F G GT+ AK+L R+ IGIE+ ++ ++A
Sbjct: 37 KYHGNFIP-QIPRQAMLRFTKRGEWVLDTFAGLGTTLIEAKRLGRNAIGIEIDENTANMA 95
Query: 262 TKRIASVQ 269
+ I +
Sbjct: 96 RELIEQEE 103
>gi|146329329|ref|YP_001209109.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
VrlL [Dichelobacter nodosus VCS1703A]
gi|2317805|gb|AAC33381.1| putative N6-adeinine specific methyltransferase [Dichelobacter
nodosus]
gi|146232799|gb|ABQ13777.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
VrlL [Dichelobacter nodosus VCS1703A]
Length = 929
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPE 210
+ + P F + + + + P + +N H T+ P
Sbjct: 72 PYYTACPNPWIADFIAEWDEQKPKQPEGHHYHREPFAADVSEGKNDPIYNAHSYHTKVPH 131
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ R ++ T+PGDI+ D F G+G +G A+
Sbjct: 132 KAIMRYILHYTQPGDIVFDGFCGTGMTGVAAQMCG 166
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 38 KSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAW 88
S+D IF DPP+ +N L +AV + + S Y
Sbjct: 502 NSLDYIFIDPPFGANINYSELNSLWESWLSVKTDQKPEAVENDV-QNKSLNDYRDLMLGC 560
Query: 89 LLACRRVLKPNGTLWVIGS------YHNIF 112
+LKP + V S ++NI
Sbjct: 561 FRKAYELLKPGRWMTVEFSNTRAAVWNNIQ 590
>gi|325168969|ref|YP_004285716.1| hypothetical protein ACMV_P2_00380 [Acidiphilium multivorum AIU301]
gi|325052782|dbj|BAJ83118.1| hypothetical protein ACMV_P2_00380 [Acidiphilium multivorum AIU301]
Length = 722
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 19/111 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDHSLVD 66
I+ G+S + +PA SVD + DPPY L + P + D
Sbjct: 480 LILNGDSSEL--PMPAGSVDAVVTDPPYFDFVHYSELSDFFFAWLSPVLRGRYPWMARED 537
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ + + A RVLK +G + S+H+ G
Sbjct: 538 SSDQGEVQHKDPRVFARQLAAVFTEACRVLKDDGV--LAFSFHHSRAEGWA 586
Score = 39.6 bits (91), Expect = 0.85, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ + G ++LDPF GSGT+ A KL IG ++
Sbjct: 76 WAHFYKTHDLAGKVVLDPFMGSGTTLGEAIKLGAKAIGCDINP 118
>gi|284929200|ref|YP_003421722.1| RNA methyltransferase, RsmD family [cyanobacterium UCYN-A]
gi|284809644|gb|ADB95341.1| RNA methyltransferase, RsmD family [cyanobacterium UCYN-A]
Length = 181
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
N L I+ ++ S K+IKG+++ +L L + D I+ DPPY
Sbjct: 79 NWLKISSSEKSF-----KVIKGDALRILNSLEEQQFDFIYFDPPY 118
>gi|209527568|ref|ZP_03276069.1| site-specific DNA-methyltransferase (cytosine-specific)
[Arthrospira maxima CS-328]
gi|209491991|gb|EDZ92345.1| site-specific DNA-methyltransferase (cytosine-specific)
[Arthrospira maxima CS-328]
Length = 486
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
+ KG+ + V+ LP S D + PPY + +
Sbjct: 275 LYKGSCLEVMPCLPNGSYDAMITSPPYCNRYDYTRTY 311
>gi|261867502|ref|YP_003255424.1| 23S rRNA m(2)G2445 methyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412834|gb|ACX82205.1| 23S rRNA m(2)G2445 methyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 715
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + DSWD
Sbjct: 597 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 643
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+PNGT+ +
Sbjct: 644 VQRDH-------IKLMTNLKRILRPNGTIVFSNNKR 672
>gi|325527107|gb|EGD04521.1| DNA methylase n-4/n-6 domain protein [Burkholderia sp. TJI49]
Length = 100
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ S PG I+DPF G GT+ A + +G+E+ + A +R+A
Sbjct: 43 FIGSHATPGGWIVDPFCGFGTTLVAAARCGVPALGVEVDAQRVRFARERLAR 94
>gi|207093480|ref|ZP_03241267.1| type II restriction enzyme M protein (hsdM) [Helicobacter pylori
HPKX_438_AG0C1]
Length = 103
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
W+K+NP PNF R ++ E +IWA S K + FNY+ LK N D QMR W P +
Sbjct: 8 WQKTNPPPNFSCRYLTHSAEQIIWARKSRK-HKHVFNYEVLKKINNDKQMRDVWNFPAIA 66
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
E+ K HPTQKP ALL R+L+ ++ +I DPF
Sbjct: 67 PWEKANGK-----HPTQKPLALLVRLLLMASDENSLIGDPF 102
>gi|218960644|ref|YP_001740419.1| Modification methylase MjaII (N-4 cytosine-specific
methyltransferase MjaII) (M.MjaII) [Candidatus
Cloacamonas acidaminovorans]
gi|167729301|emb|CAO80212.1| Modification methylase MjaII (N-4 cytosine-specific
methyltransferase MjaII) (M.MjaII) [Candidatus
Cloacamonas acidaminovorans]
Length = 529
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
+ +N ++ + + N + + +E ++
Sbjct: 41 KKYGENGQCYVLKEELAEYYHNISHNKKEEWTQQLGEDLNWVLAFDKYTEAETTKHVHRL 100
Query: 202 KLHPTQKPEALLSRILVSSTK---------PGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
+ + L+ L + T PGDI+LDPF GSGT+ A +L + IGI+
Sbjct: 101 HPYKGKFIPQLVEYFLDTHTDNFKQEVFFHPGDIVLDPFVGSGTTLVQANELGINAIGID 160
Query: 253 MKQDYIDIATKRIASV 268
+ + I++ +I
Sbjct: 161 VSAFNVLISSTKIMGY 176
>gi|332798183|ref|YP_004459682.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
sp. Re1]
gi|332695918|gb|AEE90375.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
Length = 400
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 196 RNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
++ K+H KP +++ + T+ G+I+LDPF GSG G A RR + ++
Sbjct: 15 KDCARYKMHKYWAAKPWYVVAEYIKHFTREGEIVLDPFCGSGVVGCEALIHRRKAVLNDL 74
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
+ IA S L + + K ++
Sbjct: 75 NPMAVFIAGNTCRSPVDLKKFDAEFIKIKTKLKSNIMDMY 114
Score = 36.9 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNG 55
L +P +S+D F DPPY +
Sbjct: 327 LSDIPDESIDYCFTDPPYGGSIQY 350
>gi|317061082|ref|ZP_07925567.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. D12]
gi|313686758|gb|EFS23593.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. D12]
Length = 313
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
G HPT +L ++ K G+ +LD GSG VA+KL F G+++ + +
Sbjct: 155 GTGSHPT---TSLCVDLMEEKIKVGETVLDVGTGSGILMIVAEKLGARFVCGVDIDELAV 211
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
++A + + + + +V ++ +L +IS+ V
Sbjct: 212 EVAHENLELNAVPKEKYEVLHGNLIEKIEAKSYDVVVANILA--DVLLLLLKDISSVVKK 269
Query: 319 DGTLISGTELGS-IHRVGAKVSGS 341
G +I + ++ V A V G+
Sbjct: 270 GGKIIFSGIIEDKVNEVIAAVEGA 293
>gi|257463526|ref|ZP_05627919.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. D12]
Length = 309
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
G HPT +L ++ K G+ +LD GSG VA+KL F G+++ + +
Sbjct: 151 GTGSHPT---TSLCVDLMEEKIKVGETVLDVGTGSGILMIVAEKLGARFVCGVDIDELAV 207
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
++A + + + + +V ++ +L +IS+ V
Sbjct: 208 EVAHENLELNAVPKEKYEVLHGNLIEKIEAKSYDVVVANILA--DVLLLLLKDISSVVKK 265
Query: 319 DGTLISGTELGS-IHRVGAKVSGS 341
G +I + ++ V A V G+
Sbjct: 266 GGKIIFSGIIEDKVNEVIAAVEGA 289
>gi|218246340|ref|YP_002371711.1| methyltransferase [Cyanothece sp. PCC 8801]
gi|218166818|gb|ACK65555.1| methyltransferase [Cyanothece sp. PCC 8801]
Length = 179
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
++I+G+ I+VL+ L +S D I+ DPPYN QL
Sbjct: 91 QVIRGDVINVLKTLAGQSFDRIYFDPPYNSQL 122
>gi|301155963|emb|CBW15433.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
Length = 711
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + DSWD
Sbjct: 592 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 638
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+PNGT+ +
Sbjct: 639 VQRDH-------IKLMRNLKRILRPNGTVVFSNNKR 667
>gi|289432020|ref|YP_003461893.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. GT]
gi|288945740|gb|ADC73437.1| DNA methylase N-4/N-6 domain protein [Dehalococcoides sp. GT]
Length = 797
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+ + T GD+ILDPF GSG + VA L R+ IGI++
Sbjct: 86 IETYIKEFTSTGDLILDPFCGSGATLIVAATLGRNSIGIDLSPSA 130
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-EAYDAF 84
G+ L +P+ S+D +F DPPY+ ++ W + ++A
Sbjct: 383 GD----LSAIPSNSIDYVFTDPPYSDKMPYGALNTVWEAWLGFERLWLAEEVIGDRWEAG 438
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYH 109
RA + RVLKP W+ YH
Sbjct: 439 IRAAMKEVFRVLKPG--HWISLCYH 461
>gi|144574983|gb|AAZ43581.2| putative type III restriction-modification system: methylase
[Mycoplasma synoviae 53]
Length = 392
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 31/233 (13%), Positives = 66/233 (28%), Gaps = 19/233 (8%)
Query: 49 YN--LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD--AFTRAWLLACRRVLKPNGTLWV 104
YN Q+ +++ + T+ + F Y R K L
Sbjct: 80 YNEDTQIGYKIHDLEKLKKLGYTNKDEFFEERGFYKLADLHHPSSSGAFRYSKSLDYLIE 139
Query: 105 IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR--FQNAHETLIWASPSPKAK 162
+L+ + S + N G +N +
Sbjct: 140 APDGTKFELYSNILKPESACYTW---SEDSFNVGNKLGFIEIKKNPKGYWQAYRKQYQFV 196
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICS--GSERLRNKDGEKLHPTQKPEALLSRILVSS 220
+ ++ + + G E + + + + KP L+ +L S
Sbjct: 197 KFDPKEKSIVKVVAGQEFENYIENIYSQNGGKEIIEIFENKNVFDFPKPPDLIKYLLSFS 256
Query: 221 TKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRI 265
+LD F G GT+G + R++ + ++ I + +R+
Sbjct: 257 NNKNARVLDFFAGGGTTGHAVEDLNKQDGGNRTYTLVTNNENNIGYSVTYERL 309
>gi|154148728|ref|YP_001406581.1| adenine specific DNA methyltransferase [Campylobacter hominis ATCC
BAA-381]
gi|153804737|gb|ABS51744.1| adenine specific DNA methyltransferase [Campylobacter hominis ATCC
BAA-381]
Length = 227
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 25/141 (17%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKK------LRRSFIG 250
+ + + KP L+ +++ T D IILD F GSGT+ + R FI
Sbjct: 3 NKKVVFDYPKPVKLIKQMINLYTNSNDNDIILDFFAGSGTTVHAVMELNAEDGGNRKFIL 62
Query: 251 IEMKQD--------YIDIATKRIASVQPLGNIELTVLTGKRT------EPRVAFNLLVER 296
+++ + D + S P+ + +TV KR E F +
Sbjct: 63 MQINEKIDEQKSKTAYDFCKNELKSKIPVISD-ITVKRVKRAAAKIKTEKNTDFGFKIFS 121
Query: 297 GLIQPGQILTNAQGNISATVC 317
I+ L + ++ TV
Sbjct: 122 --IENRVKLQKRKEELNLTVR 140
>gi|293391379|ref|ZP_06635713.1| N6-adenine-specific DNA methytransferase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951913|gb|EFE02032.1| N6-adenine-specific DNA methytransferase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 712
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + DSWD
Sbjct: 594 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 640
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+PNGT+ +
Sbjct: 641 VQRDH-------IKLMTNLKRILRPNGTIVFSNNKR 669
>gi|320190185|gb|EFW64835.1| DNA methylase [Escherichia coli O157:H7 str. EC1212]
Length = 40
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+L +I+ +S++PGD++ D F G G++ A L R +G+
Sbjct: 1 MLRQIINASSRPGDLVADFFMGFGSTIKAAMALGRRALGV 40
>gi|326778616|ref|ZP_08237881.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
gi|326658949|gb|EGE43795.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
Length = 867
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 287 RVAFNLLVERGLIQPGQILTNAQG--NISATVCADGTL--ISGTELGSIHRVGAKVSGSE 342
RV L++ GLI G LT + SA V A G L + G + S +R A G
Sbjct: 479 RVTMADLLDAGLITEGTQLTFERAGARYSARVTAAGRLELVGGQQFPSPNRAAAAAVGEG 538
Query: 343 TCNGWNFWYFEKLGELHSINTLRILV 368
T +GW W E L + LR
Sbjct: 539 TVDGWQSWALEDGTTL---DRLRQRF 561
>gi|320659557|gb|EFX27120.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
USDA 5905]
Length = 702
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLREGGTIMFSNNKR 659
>gi|300863900|ref|ZP_07108818.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300338086|emb|CBN53964.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 240
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 3/119 (2%)
Query: 204 HPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+P L+ ++ +++DPF G GT+ AK+ + IGIE +A
Sbjct: 49 YPAGFSYKLVEELISDFNLNSKSLVIDPFAGCGTTAVTAKQNGINSIGIEAHPFVYWVAQ 108
Query: 263 KRI--ASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCAD 319
+ +T L P V + + + + D
Sbjct: 109 AKCFWEYDMKKLRQSITNLLAYLQSPPPFPGSDVLKNFPELLGKCYSDENLWVLKFIRD 167
>gi|255598579|ref|XP_002537039.1| conserved hypothetical protein [Ricinus communis]
gi|223517714|gb|EEF25342.1| conserved hypothetical protein [Ricinus communis]
Length = 58
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 232 FGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
GSG++G A + FIGI++ +Y++IA KRI E+ T +R
Sbjct: 1 MGSGSTGKAAMREGFRFIGIDLTAEYVEIARKRIEWELARVEAEIRYATAQRD 53
>gi|325578742|ref|ZP_08148789.1| N6-adenine-specific DNA methytransferase [Haemophilus
parainfluenzae ATCC 33392]
gi|325159566|gb|EGC71698.1| N6-adenine-specific DNA methytransferase [Haemophilus
parainfluenzae ATCC 33392]
Length = 711
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + DSWD
Sbjct: 592 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 638
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+PNGT+ +
Sbjct: 639 VQRDH-------IKLMRNLKRILRPNGTIVFSNNKR 667
>gi|291320736|ref|YP_003516001.1| protoporphirogen oxidase HEMK [Mycoplasma agalactiae]
gi|290753072|emb|CBH41048.1| Protoporphirogen oxidase HEMK [Mycoplasma agalactiae]
Length = 240
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 5 NSLAINENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
N + N+N + +K+ I++ + + ++ DLI ++PPY L+
Sbjct: 109 NEAIMQANENVVLNFKNTTGIQIVQSDCFNDIK----GKFDLIVSNPPY---LDYDDKDV 161
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
D S V F+ + F L + L G L + +I R +
Sbjct: 162 DES-VKKFEPEIALFAKDSGWY-FYEKILNEAKHYLNEGGILAFEINPKHIDRWKQI 216
>gi|323144448|ref|ZP_08079051.1| ribosomal RNA large subunit methyltransferase L [Succinatimonas
hippei YIT 12066]
gi|322415763|gb|EFY06494.1| ribosomal RNA large subunit methyltransferase L [Succinatimonas
hippei YIT 12066]
Length = 818
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 57/195 (29%), Gaps = 30/195 (15%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
++ +N ++ I+ + ++ L +S DLI+ DPP S
Sbjct: 591 DNFKLNNISLKGHDF----IQADCLAWLSSDHNESFDLIYIDPP------------TFSN 634
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
++ ++D L R LK G + + N + ++
Sbjct: 635 SKRMSKTFDVQRDH-------LMLLANLTRHLKDGGNVIFCTNRRNFKLDENI---KDYG 684
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLI-WASPSPKAKGYTFNYDALKAANEDVQMRSD 183
+ + + P R + N+H + + + T +
Sbjct: 685 FTVKDITKFTIPRDFMRSK---NSHSCFMLSFTKAECKGEVTPLVTVTNVPRWSKTLSDK 741
Query: 184 WLIPICSGSERLRNK 198
S L+++
Sbjct: 742 ENRFSYKKSRELKDE 756
>gi|188591462|ref|YP_001796061.1| putative DNA methyltransferase, Modification methylase [Cupriavidus
taiwanensis]
gi|170938857|emb|CAP63858.1| putative DNA methyltransferase, Modification methylase [Cupriavidus
taiwanensis LMG 19424]
Length = 414
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
R G H +P + ++PGD+++DPF G+ +G A++
Sbjct: 314 HNCADTRAYRRAAQSLGLPTHGAMQPTDIPDFFTRFLSRPGDLVVDPFGGTIRTGLAAER 373
Query: 244 LRRSFIGIEMKQDYIDIA 261
L R +I E Y+ A
Sbjct: 374 LGRRWIATEWILQYVRGA 391
>gi|251794328|ref|YP_003009059.1| hypothetical protein Pjdr2_0292 [Paenibacillus sp. JDR-2]
gi|247541954|gb|ACS98972.1| conserved hypothetical protein [Paenibacillus sp. JDR-2]
Length = 436
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
N ++ I G+ ++ +L +DL+ PPY +
Sbjct: 237 NKQINNQNYFINGDCRDLVGELNDNELDLVITSPPYLNSRDYT 279
>gi|317495341|ref|ZP_07953711.1| DNA methylase [Gemella moribillum M424]
gi|316914763|gb|EFV36239.1| DNA methylase [Gemella moribillum M424]
Length = 352
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 7/133 (5%)
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIP 187
++ +KS + + + E + A+ GY K + +
Sbjct: 35 ELFPKKSQGISTVWRWGKEKSLENINIAAKKMIDGGYMIVEKYRKNETMARSVWNGKEDN 94
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK--- 243
G+ ++ +G K+ K ++ +I + P DIILD F GS T+ K
Sbjct: 95 SEKGTLLVKELFNGNKVFDFPKSNDMIKKIFEIGSCPNDIILDFFSGSATTAHAVMKLNA 154
Query: 244 ---LRRSFIGIEM 253
R +I +++
Sbjct: 155 EDGGNRKYILVQL 167
>gi|99034327|ref|ZP_01314363.1| hypothetical protein Wendoof_01000839 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 218
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 15/165 (9%)
Query: 21 DKIIKGNS--ISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
+I G+S + + + D+ DPPYN+ R D +++
Sbjct: 62 HRIYCGDSCVVESFKAVLDDKMADITVCDPPYNVDYGSSQEREDKKILNDNQG------- 114
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
E Y+ F K G +++ S + + I+W K++
Sbjct: 115 -EKYELFLYDICSNILAYTK--GAIYICISSSEFSTLQKAFEEAGGKWSTFIIWAKNHFT 171
Query: 138 PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
+Q +E +++ S + + + D + +
Sbjct: 172 LG--RSDYQRQYEAMLYGWKSGNKREWHGGRNQSDLWFYDKPIHN 214
>gi|296329491|ref|ZP_06871978.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674815|ref|YP_003866487.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296153373|gb|EFG94235.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305413059|gb|ADM38178.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 261
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
G+ +++LP SVD+++ DP
Sbjct: 160 NGDCFEYIKQLPDNSVDVVYFDP 182
>gi|289578544|ref|YP_003477171.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
Ab9]
gi|289528257|gb|ADD02609.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter italicus
Ab9]
Length = 853
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 35 LPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
+ + S+D IF DPP+ L L ++ +A+ + + Y
Sbjct: 459 IKSNSIDYIFTDPPFGDNLMYSELNFLWEAWLKVFTNNKTEAIINKV-QRKGLHEYQELM 517
Query: 86 RAWLLACRRVLKPNGTLWV 104
R+LKP + V
Sbjct: 518 EKAFSEMYRILKPGRWMTV 536
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPE 210
+ P F K E+ + P + +N H T+ P
Sbjct: 32 PHYTACPNPFISEFIEKYGKPYEEEKDDYNCE--PYTADVSEGKNDPIYNAHSYHTKVPH 89
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ R ++ TKPGDI+ D F G+G +G A+
Sbjct: 90 KAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQMCG 124
>gi|326389941|ref|ZP_08211504.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
ethanolicus JW 200]
gi|325994001|gb|EGD52430.1| DNA methylase N-4/N-6 domain protein [Thermoanaerobacter
ethanolicus JW 200]
Length = 853
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 35 LPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
+ + S+D IF DPP+ L L ++ +AV + K Y
Sbjct: 459 INSNSIDYIFTDPPFGDNLMYSELNFLWEAWLRVFTNNKTEAVINKIQK-KGLHEYQELM 517
Query: 86 RAWLLACRRVLKPNGTLWVIG 106
R+LKP + V+
Sbjct: 518 EKAFSEMYRILKPGRWMTVVF 538
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPE 210
+ + P F K E+ + P + +N H T+ P
Sbjct: 32 PYYTACPNPFINEFIEKYGKPYVEEKDDYNCE--PYTADVSEGKNDPIYNAHSYHTKVPH 89
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ R ++ TKPGDI+ D F G+G +G A+
Sbjct: 90 KAIMRYILHYTKPGDIVFDGFCGTGMTGVAAQMCG 124
>gi|288957690|ref|YP_003448031.1| hypothetical protein AZL_008490 [Azospirillum sp. B510]
gi|288958869|ref|YP_003449210.1| hypothetical protein AZL_020280 [Azospirillum sp. B510]
gi|288909998|dbj|BAI71487.1| hypothetical protein AZL_008490 [Azospirillum sp. B510]
gi|288911177|dbj|BAI72666.1| hypothetical protein AZL_020280 [Azospirillum sp. B510]
Length = 469
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 24 IKGNSISVLEKLPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+G+S + LPA DL+F PPY D S F S++ +
Sbjct: 303 IEGDSAKIDSLLPAGRLYDLVFTSPPYYDLEIYSKGEKDGSA----------FESYDRFI 352
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY 108
++ R LKPN V
Sbjct: 353 SWYRDIFRQACGRLKPNRFAVVKIGD 378
>gi|24215368|ref|NP_712849.1| methyltransferase DNA modification enzyme [Leptospira interrogans
serovar Lai str. 56601]
gi|24196481|gb|AAN49867.1| methyltransferase DNA modification enzyme [Leptospira interrogans
serovar Lai str. 56601]
Length = 383
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 4/138 (2%)
Query: 32 LEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
LE L +VD++ PP+ N + + L + FS+ A+ F
Sbjct: 240 LESLQDGTVDIVITSPPFLDKVNYEEDNWLRYWFLDIKLPDHKKPSIFSTLNAWTDFIHD 299
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L RVLK G + L + N + +
Sbjct: 300 TLKELSRVLKSEGICVMEVGDIKKGPTVFNLDEYVIQAASGSGLEWETTFINDQKFTKLS 359
Query: 148 AHETLIWASPSPKAKGYT 165
+ +
Sbjct: 360 NCWNVSNNEKGTNSNRCV 377
>gi|49420963|gb|AAT65822.1| M.EsaWC2II [uncultured bacterium]
Length = 428
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+++ Q L+ +L + PG ++LDPF GSGT + +L G E+
Sbjct: 44 KSRSNLFSWRGQFSPQLVEALLRAYAAPGSVVLDPFMGSGTVLIESARLGLPVYGYEVNP 103
Query: 256 DYIDIATKRIASVQPLGNIE 275
A RI + L E
Sbjct: 104 AAYLRA--RIYELCSLTKSE 121
>gi|329297974|ref|ZP_08255310.1| 23S rRNA m(2)G2445 methyltransferase [Plautia stali symbiont]
Length = 705
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + +S L + + DLIF DPP D F
Sbjct: 591 HRLMQADCLSWLRE-SDEQFDLIFIDPP---------------TFSNSKRMEDDFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ L +R+L+ GT+ +
Sbjct: 635 HLML----LQNLKRMLRRGGTIMFSNNKR 659
>gi|261881201|ref|ZP_06007628.1| methyltransferase [Prevotella bergensis DSM 17361]
gi|270332070|gb|EFA42856.1| methyltransferase [Prevotella bergensis DSM 17361]
Length = 132
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 21 DKIIKGNSISVLEKLP---AKSVDLIFADPPYNLQL 53
+I+G+++ L L A +D+ + DPPYN
Sbjct: 76 HILIEGDNLHALTALSYTHAGKIDVFYIDPPYNTGN 111
>gi|188996130|ref|YP_001930381.1| Protein of unknown function methylase putative
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931197|gb|ACD65827.1| Protein of unknown function methylase putative
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 157
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 9 INENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
IN+ + + ++ K + + + L+ P +S D++FADPPY+ + +L +
Sbjct: 59 INQIKEKLKNVENVKFVSKDVLKYLKDQPDESFDIVFADPPYDYKYYDKLIKG 111
>gi|315633836|ref|ZP_07889125.1| N6-adenine-specific DNA methytransferase [Aggregatibacter segnis
ATCC 33393]
gi|315477086|gb|EFU67829.1| N6-adenine-specific DNA methytransferase [Aggregatibacter segnis
ATCC 33393]
Length = 715
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + DSWD
Sbjct: 597 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 643
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +R+L+PNGT+ + L+ L + + K
Sbjct: 644 VQRDH-------IKLMTNLKRILRPNGTIVFSNNKRGFKMDFAKLEELG--LSAVEISHK 694
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 695 TLPLDFERNKQIHNCW 710
>gi|221310099|ref|ZP_03591946.1| YpiP [Bacillus subtilis subsp. subtilis str. 168]
gi|221314420|ref|ZP_03596225.1| YpiP [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221319343|ref|ZP_03600637.1| YpiP [Bacillus subtilis subsp. subtilis str. JH642]
gi|221323618|ref|ZP_03604912.1| YpiP [Bacillus subtilis subsp. subtilis str. SMY]
gi|255767478|ref|NP_390068.2| methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
gi|226693591|sp|P54171|YPIP_BACSU RecName: Full=Uncharacterized protein ypiP
gi|225185105|emb|CAB14103.2| putative methyltransferase [Bacillus subtilis subsp. subtilis str.
168]
Length = 257
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
G+ +++LP SVD+++ DP
Sbjct: 160 NGDCFEHIKQLPDNSVDVVYFDP 182
>gi|150445935|dbj|BAF68988.1| AvaI methyltransferase-homolog [Microcystis aeruginosa]
Length = 470
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
++ +G+ + +L ++ ++ D I PPY + +
Sbjct: 265 QLYQGSCLEILPEISSEKYDSIITSPPYCNRYDYTRIY 302
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
L+ +L ILDPF GSGT+ A S GIE+ ++ R
Sbjct: 61 FSVDLIVYLLEKYGIKQGKILDPFAGSGTTLFAAAARGLSADGIELLPIGQELIITRQIL 120
Query: 268 VQPLGNIEL 276
L + ++
Sbjct: 121 ENGLNSDDI 129
>gi|1256637|gb|AAA96631.1| putative [Bacillus subtilis subsp. subtilis str. 168]
Length = 172
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
G+ +++LP SVD+++ DP
Sbjct: 75 NGDCFEHIKQLPDNSVDVVYFDP 97
>gi|237740907|ref|ZP_04571388.1| sensor protein fixL [Fusobacterium sp. 4_1_13]
gi|256846849|ref|ZP_05552304.1| sensor protein fixL [Fusobacterium sp. 3_1_36A2]
gi|229431204|gb|EEO41416.1| sensor protein fixL [Fusobacterium sp. 4_1_13]
gi|256717815|gb|EEU31373.1| sensor protein fixL [Fusobacterium sp. 3_1_36A2]
Length = 244
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + + +++ T D+ILD F G GT+ AK L R+
Sbjct: 18 WSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEEDLILDQFIGGGTTLVEAKLLNRNI 77
Query: 249 IGIEMKQDYIDIATKRIASV 268
IGI++ I+ ++I
Sbjct: 78 IGIDVNDVAIERCKEKIDFE 97
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 32/166 (19%)
Query: 12 NQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVD 66
+ FE+++ I KG++ L+ + +++D I PPY N+ + D S +
Sbjct: 91 KEKIDFEFENSGKVYIHKGDARR-LDFIKDETIDFICTHPPYANIIEYSEDIEEDLSHLK 149
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF--- 123
+ + RVLK + ++ I L
Sbjct: 150 -----------IPEFLKEMKKVASESYRVLKKDKFCAILMGDTRIKGHIQPLGFEVMKVF 198
Query: 124 ---WILNDIVWRKSNPMPNFRGRRFQN---------AHETLIWASP 157
+ K G N AHE L
Sbjct: 199 EAEGFKLKEIIIKEQHNCKATGYWKTNSIKYNFFLIAHEYLFVFKK 244
>gi|166368013|ref|YP_001660286.1| AvaI methyltransferase-homolog [Microcystis aeruginosa NIES-843]
gi|166090386|dbj|BAG05094.1| AvaI methyltransferase-homolog [Microcystis aeruginosa NIES-843]
Length = 470
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
++ +G+ + +L ++ ++ D I PPY + +
Sbjct: 265 QLYQGSCLEILPEISSEKYDSIITSPPYCNRYDYTRIY 302
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
L+ +L ILDPF GSGT+ A S GIE+ ++ R
Sbjct: 61 FSVDLIVYLLEKYGIKQGKILDPFAGSGTTLFAAAARGLSADGIELLPIGQELIITRQIL 120
Query: 268 VQPLGNIEL 276
L + ++
Sbjct: 121 ENGLNSDDI 129
>gi|251792044|ref|YP_003006764.1| 23S rRNA m(2)G2445 methyltransferase [Aggregatibacter aphrophilus
NJ8700]
gi|247533431|gb|ACS96677.1| hypothetical protein NT05HA_0239 [Aggregatibacter aphrophilus
NJ8700]
Length = 718
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + DSWD
Sbjct: 597 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 643
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +R+L+PNGT+ + L+ L + + K
Sbjct: 644 VQRDH-------IKLMTNLKRILRPNGTIVFSNNKRGFKMDFAKLEELG--LSAVEISHK 694
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 695 TLPLDFERNKQIHNCW 710
>gi|219848032|ref|YP_002462465.1| hypothetical protein Cagg_1119 [Chloroflexus aggregans DSM 9485]
gi|219542291|gb|ACL24029.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
Length = 1030
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
+ ++ D Q P + +N H T+ P + R +
Sbjct: 130 CPNPFIGDFIRSYGKPYDPQTDDYRREPFAADVSEGKNDPIYNAHSYHTKVPHKAIMRYI 189
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ T+PGD++ D F G+G +G A+
Sbjct: 190 LHYTEPGDVVFDGFCGTGMTGVAAQLCG 217
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 40 VDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
VD IF DPP+ L L ++ +A+ + + Y A
Sbjct: 587 VDYIFTDPPFGGNLMYSELNFLWEAWLKVFTNNKPEAIENQT-QGKGLAEYQRLMTACFK 645
Query: 91 ACRRVLKPNGTLWVIGSYHNI 111
RVLKP W+ +HN
Sbjct: 646 EYYRVLKPG--RWMTVEFHNS 664
>gi|167751319|ref|ZP_02423446.1| hypothetical protein EUBSIR_02305 [Eubacterium siraeum DSM 15702]
gi|167655826|gb|EDR99955.1| hypothetical protein EUBSIR_02305 [Eubacterium siraeum DSM 15702]
Length = 249
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
+ I++ ++ GD++LD F G GT+ AK L R IGI++ D+A +R +
Sbjct: 45 IPRNIILRYSQEGDLVLDQFAGGGTTLVEAKLLNRDIIGIDIN----DVALERCSEKTAF 100
Query: 272 G 272
Sbjct: 101 D 101
Score = 43.5 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 14/110 (12%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ +K G++ L+ +P S+DLI PPY + D + +
Sbjct: 110 YINK---GDAR-CLDSIPDDSIDLICTHPPYADIIKYS---------DGIDGDLSQLK-V 155
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ + + RVLK ++ + I D
Sbjct: 156 KDFLEQMKPVAEESYRVLKKGKFCAILMGDTRQKGCMIPMSFDVMKIFQD 205
>gi|148270888|ref|YP_001245348.1| adenine-specific DNA methylase [Thermotoga petrophila RKU-1]
gi|147736432|gb|ABQ47772.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Thermotoga petrophila RKU-1]
Length = 916
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 26/119 (21%)
Query: 23 IIKGNS--ISVLEKLPAKSVDLIFADPPYN-------------------LQLNGQLYRPD 61
I G+S + +P KSVD + DPPY L+ + +R +
Sbjct: 532 ITCGDSSYLD----IPDKSVDAVITDPPYYGNVMYSELSEFYYAWLRLALKDKYEYFRSE 587
Query: 62 HS-LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
H + + + + + A R LK +G + + G +LQ
Sbjct: 588 HVPNATEIIVNKVQGKDEKDFIEGLTAVFKEANRKLKDDGLMVFTFHHQEEKAWGAVLQ 646
>gi|238021678|ref|ZP_04602104.1| hypothetical protein GCWU000324_01581 [Kingella oralis ATCC 51147]
gi|237866292|gb|EEP67334.1| hypothetical protein GCWU000324_01581 [Kingella oralis ATCC 51147]
Length = 479
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 11/196 (5%)
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVL-KPNGTLWV--IGSYHNIFRIGTMLQNLNFWI 125
D + + W + L K + ++ G Y + + +
Sbjct: 98 KDILSHSDNLAEAQSKYTKWFRENKLQLGKLDRYKYIDEKGIYTGSQSVHNPGKEGYRYD 157
Query: 126 LNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE-DVQMRSDW 184
+ + S P R + + L+ + + + E + ++ S
Sbjct: 158 VIHPKTKMSCKQPLMGYRFKEETMKRLLSENKVLFGTDHNKIIELKVYVEEFEEKLSSII 217
Query: 185 LIPICSGSERLRNKDGE-KLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ G+ L++ + ++ KP +L+ +L GDI LD F GSGT+ +
Sbjct: 218 ELDGRIGAYDLKDIFDKSQIFTNPKPVSLIQNLLPFILNDGDIFLDFFAGSGTTAQAIMQ 277
Query: 244 LR------RSFIGIEM 253
+ R I I++
Sbjct: 278 MNTQDEKKRRCICIQL 293
>gi|108804625|ref|YP_644562.1| adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Rubrobacter xylanophilus DSM 9941]
gi|108765868|gb|ABG04750.1| adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Rubrobacter xylanophilus DSM 9941]
Length = 703
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+I++ +S L LP SVDL+ DPPY
Sbjct: 459 RILRADSRD-LGALPDASVDLVLTDPPY 485
>gi|294786033|ref|ZP_06751320.1| DNA methylase [Fusobacterium sp. 3_1_27]
gi|294486370|gb|EFG33733.1| DNA methylase [Fusobacterium sp. 3_1_27]
Length = 247
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + + +++ T D+ILD F G GT+ AK L R+
Sbjct: 21 WSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEEDLILDQFIGGGTTLVEAKLLNRNI 80
Query: 249 IGIEMKQDYIDIATKRIASV 268
IGI++ I+ ++I
Sbjct: 81 IGIDVNDVAIERCKEKIDFE 100
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 32/166 (19%)
Query: 12 NQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVD 66
+ FE+++ I KG++ L+ + +++D I PPY N+ + D S +
Sbjct: 94 KEKIDFEFENSGKVYIHKGDARR-LDFIKDETIDFICTHPPYANIIEYSEEIEEDLSHLK 152
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF--- 123
+ + RVLK + ++ I L
Sbjct: 153 -----------IPEFLKEMKKVASESYRVLKKDKFCVILMGDTRIKGHIQPLGFEVMKVF 201
Query: 124 ---WILNDIVWRKSNPMPNFRGRRFQN---------AHETLIWASP 157
+ K G N AHE L
Sbjct: 202 EAEGFKLKEIIIKEQHNCKATGYWKTNSIKYNFFLIAHEYLFVFKK 247
>gi|188990148|ref|YP_001902158.1| putative methyltransferase [Xanthomonas campestris pv. campestris
str. B100]
gi|167731908|emb|CAP50092.1| putative methyltransferase [Xanthomonas campestris pv. campestris]
Length = 354
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ + + G + DPF G G++ A R G+E+ +A +R+
Sbjct: 42 MRPFVRHFSARGQQVFDPFCGFGSTLLAAALEGRQAHGMEIDPARAVVARERLRRHA 98
>gi|256004416|ref|ZP_05429396.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360]
gi|255991557|gb|EEU01659.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360]
gi|316941351|gb|ADU75385.1| DNA methylase N-4/N-6 domain protein [Clostridium thermocellum DSM
1313]
Length = 851
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
+ ++ D P + +N H T+ P + R +
Sbjct: 38 CPNPFIEDFIKEHGKPYDEATDDYHREPFAADVSEGKNDPIYNAHSYHTKVPHKAIMRYI 97
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ T+PGDI+ D F G+G +G A+
Sbjct: 98 LHYTEPGDIVFDGFCGTGMTGVAAQMCG 125
>gi|301061026|ref|ZP_07201823.1| conserved hypothetical protein [delta proteobacterium NaphS2]
gi|300444820|gb|EFK08788.1| conserved hypothetical protein [delta proteobacterium NaphS2]
Length = 950
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
+ ++ + P + +N +H T+ P + R +
Sbjct: 94 CPNPFIADFIKYYGKPYNPATDDYRRGPFAADVSEGKNDPIYNVHSYHTKVPHKAIMRYI 153
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ T PGD++ D F G+G +G A+
Sbjct: 154 LHFTNPGDLVFDGFCGTGMTGVAARMCG 181
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 13/152 (8%)
Query: 32 LEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ + SVD +F DPP+ N+ L ++ +A+ + + + Y
Sbjct: 516 IPHIADNSVDYLFIDPPFGSNIMYSELNILWESWLRIKTNTTPEAIENMT-QNKRLDDYR 574
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM---LQNLNFWILNDIVWRKSNPMPN 139
+ + RVLKP + V S ++ L F I N K N
Sbjct: 575 QLMLSCFVEAYRVLKPGHWMTVEFSNTKASVWNSIQTSLSEAGFIIANVSALDKKQGSFN 634
Query: 140 FRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ +I A F+ +A
Sbjct: 635 AVTNTTSVKQDLVISAYKPNGGFENRFHQEAQ 666
>gi|237808179|ref|YP_002892619.1| 23S rRNA m(2)G2445 methyltransferase [Tolumonas auensis DSM 9187]
gi|237500440|gb|ACQ93033.1| putative RNA methylase [Tolumonas auensis DSM 9187]
Length = 712
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 23/153 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + W+ K + + + L ++ DLIF DPP S +
Sbjct: 580 NMRHNGLTSWQHKFEQADCLDWLRHC-EQTFDLIFIDPP------------TFSNSKRMD 626
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
D++D + +++L P+G + + L L ++ +
Sbjct: 627 DTFDVQRDH-------IDVMAMLKKILNPDGLIVFSNNKRQFKMDFNGLAELG--LVAEN 677
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAK 162
+ K+ P R N+ + A + ++
Sbjct: 678 ISAKTLPKDFARNPHIHNSWL-IRHAPKTDVSQ 709
>gi|319787225|ref|YP_004146700.1| DNA methylase N-4/N-6 domain protein [Pseudoxanthomonas suwonensis
11-1]
gi|317465737|gb|ADV27469.1| DNA methylase N-4/N-6 domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 425
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTK-PGDIILDPFFGSGTSG 238
M+S +I ++ D + P S I+ S G ++LDP+ GSGT+
Sbjct: 1 MKSFEVISPKQDAKNRTVWDEFFPYYAGYPVKFASTIIESIDLARGSVVLDPWSGSGTTP 60
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRI 265
A + +G ++ + +A R+
Sbjct: 61 YAAARAGVDSLGFDINPAMVVVAKARL 87
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLY 58
LP +VD + PPY +++
Sbjct: 242 LPDSTVDAVITSPPYCTRIDYATT 265
>gi|68248729|ref|YP_247841.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
86-028NP]
gi|81336856|sp|Q4QP66|RLML_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|68056928|gb|AAX87181.1| possible SAM-dependent methyltransferase [Haemophilus influenzae
86-028NP]
Length = 711
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + DSWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|34762959|ref|ZP_00143938.1| Sensor protein fixL [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27887382|gb|EAA24473.1| Sensor protein fixL [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 247
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + + +++ T D+ILD F G GT+ AK L R+
Sbjct: 21 WSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEEDLILDQFIGGGTTLVEAKLLNRNI 80
Query: 249 IGIEMKQDYIDIATKRIAS 267
IG+++ I+ ++I
Sbjct: 81 IGVDVNNVAIERCKEKINF 99
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 51/174 (29%), Gaps = 33/174 (18%)
Query: 5 NSLAINENQNSIF-EWKDK----IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLY 58
N++AI + I +++ I KG++ L+ + +++D I PPY N+ +
Sbjct: 86 NNVAIERCKEKINFNFENSGKVYIHKGDARK-LDFIKDETIDFICTHPPYANIIEYSEDI 144
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
D S + + + RVLK + ++ I L
Sbjct: 145 EEDLSHLK-----------IPEFLKEMKKVASESYRVLKKDKFCAILMGDTRIKGHIQPL 193
Query: 119 QNLNF------WILNDIVWRKSNPMPNFRGRRFQN---------AHETLIWASP 157
+ K G N AHE L
Sbjct: 194 GFEVMKVFEAEGFKLKEIIIKEQHNCKATGYWKTNSIKYNFFLIAHEYLFVFKK 247
>gi|288560696|ref|YP_003424182.1| RNA methylase [Methanobrevibacter ruminantium M1]
gi|288543406|gb|ADC47290.1| RNA methylase [Methanobrevibacter ruminantium M1]
Length = 344
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGE 201
G + + + +PK+ Y + E ++
Sbjct: 117 GGYILTSTDNISVNLSNPKSFIRVVAYKNTIYLCYGKYQLNKKYF------EEMKPHKRP 170
Query: 202 KLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
HP L +R +V+ + K GD++LDPF G+G A + +G ++
Sbjct: 171 FFHPGCMSPKL-ARCMVNLSRVKEGDLVLDPFCGTGGILIEAGLIGAKVVGCDIDW 225
>gi|237745376|ref|ZP_04575857.1| sensor protein fixL [Fusobacterium sp. 7_1]
gi|229432605|gb|EEO42817.1| sensor protein fixL [Fusobacterium sp. 7_1]
Length = 247
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 37/105 (35%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + + +++ T D+ILD F G GT+ AK L R+
Sbjct: 21 WSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEKDLILDQFIGGGTTLVEAKLLNRNI 80
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
IGI++ I+ ++I R + +
Sbjct: 81 IGIDVNDVAIERCKEKIDFEFGNSGKVYIHKGDARKLNFIKNETI 125
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 40/151 (26%), Gaps = 28/151 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I KG++ L + +++D I PPY N+ + D S + +
Sbjct: 109 IHKGDARK-LNFIKNETIDFICTHPPYANIIKYSEDVEEDLSHLK-----------IPEF 156
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF------WILNDIVWRKSN 135
+ RVLK + ++ I L + K
Sbjct: 157 LKEMKKVASESYRVLKKDKFCAILMGDTRIKGHIQPLGFEVMKVFEKVGFKLKEIIIKEQ 216
Query: 136 PMPNFRGRRFQN---------AHETLIWASP 157
G N AHE L
Sbjct: 217 HNCKATGYWKTNSIKYNFFLIAHEYLFIFKK 247
>gi|149914056|ref|ZP_01902588.1| putative modification methylase [Roseobacter sp. AzwK-3b]
gi|149812340|gb|EDM72171.1| putative modification methylase [Roseobacter sp. AzwK-3b]
Length = 100
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+LDP GSG + VA++ R +I I+ + + +A RI +
Sbjct: 1 MLDPTCGSGATAYVAEQWGRRWITIDTSRVALALARARIMGAK 43
>gi|257126973|ref|YP_003165087.1| RNA methylase [Leptotrichia buccalis C-1013-b]
gi|257050912|gb|ACV40096.1| putative RNA methylase [Leptotrichia buccalis C-1013-b]
Length = 247
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ + S +R + + + + +L+ + GD+ILD F G GT+ AK L
Sbjct: 17 MNTVWSFPDRGKWATHDAKYRGNWSPYIPRNLLLRYSNEGDLILDQFAGGGTTLVEAKLL 76
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
R+ IG+++ + + R L
Sbjct: 77 NRNIIGVDINSNALK----RCKEKCDFEYENL 104
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 48/166 (28%), Gaps = 32/166 (19%)
Query: 12 NQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVD 66
+ FE+++ + ++ + L +P +++D I PPY N+ + D S +
Sbjct: 94 KEKCDFEYENLGKVYFYEADARN-LNFIPDENIDFICTHPPYANIIKYSEDIENDLSHLK 152
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNF-- 123
+ + RVLK + ++G I M +
Sbjct: 153 V-----------KDFLIEMEKVASESYRVLKKDKFCAILMGDTRQKGHIIPMSFEVMKIF 201
Query: 124 ---WILNDIVWRKSNPMPNFRGRRFQN---------AHETLIWASP 157
+ K G N AHE L
Sbjct: 202 EKVGFKTKEIIIKEQHNCKATGFWKTNSVKYNFLLIAHEYLFVFKK 247
>gi|323701235|ref|ZP_08112910.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum nigrificans
DSM 574]
gi|323533837|gb|EGB23701.1| DNA methylase N-4/N-6 domain protein [Desulfotomaculum nigrificans
DSM 574]
Length = 939
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 34 KLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+LP S+D IF DPP+ NL L +S +A+ + + Y
Sbjct: 505 ELPPNSIDYIFTDPPFGANLMYSELNLIWEAWLGILTNSKPEAIINE-AQEKMLPDYQKL 563
Query: 85 TRAWLLACRRVLKPNGTLWVIGS 107
RVLKP + V S
Sbjct: 564 IEECFREYFRVLKPGRWMTVEFS 586
Score = 42.7 bits (99), Expect = 0.090, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP-- 205
+ A P+P + ++ K + P + + H
Sbjct: 61 SDPPYYTACPNPFIPEFIKQWEKEKRELYGDEEEEYHREPFAADVSEGKGDPIYNAHSYH 120
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
T+ P + R ++ TKPGDII D F G+G +G A
Sbjct: 121 TKVPHKAIMRYILHYTKPGDIIYDGFSGTGMTGVAAGNCG 160
>gi|183220734|ref|YP_001838730.1| putative methyltransferase DNA modification enzyme [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910835|ref|YP_001962390.1| DNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167775511|gb|ABZ93812.1| DNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167779156|gb|ABZ97454.1| Putative methyltransferase DNA modification enzyme [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 385
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPY----NLQLNGQLYRPDHSLVDAVTDSWDKF 75
K+ I NS + + + ++SVDLI PP+ + + + L + + F
Sbjct: 230 KNNIYSLNSANSVPNVDSESVDLIVTSPPFLDKVDYEGDNWLRHWFLDIQKSKDRKLSIF 289
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
S+ ++ F R+ L RVLK + +
Sbjct: 290 SNINDWNEFIRSTLKESARVLKKGAYMVM 318
>gi|113476662|ref|YP_722723.1| hypothetical protein Tery_3117 [Trichodesmium erythraeum IMS101]
gi|110167710|gb|ABG52250.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 936
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 55/184 (29%), Gaps = 35/184 (19%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVDLIFADPPYNLQLNG----------------------- 55
+K I+ +S L +P SVD I DPPY +
Sbjct: 502 NKTIQIDSTSADTLYHIPNNSVDAIITDPPYYATIQYAELSDFFYVWQRRVLGDIFPDLY 561
Query: 56 --QLYRPDHSLVDAVTDSWDKFSSFEA-----YDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+L D V + + +S + Y+A RVL+ +G + V ++
Sbjct: 562 LTELTDKDREAVANPSRFRNMGTSPDELANQDYEAKMALAFAEHYRVLRDDGVMTVQFNH 621
Query: 109 HNIFRIGTM---LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ L + F I NP + ++ + L+
Sbjct: 622 KESGAWDVLAKSLIDAGFEITASWAVSTENPQNLHQAKKNSVSSTVLLVCRKRDPNAPQA 681
Query: 166 FNYD 169
+ D
Sbjct: 682 WWDD 685
>gi|313673190|ref|YP_004051301.1| methyltransferase [Calditerrivibrio nitroreducens DSM 19672]
gi|312939946|gb|ADR19138.1| methyltransferase [Calditerrivibrio nitroreducens DSM 19672]
Length = 168
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-------------- 49
+++ + +N I + +IKG+ + + L KS D+IF DPPY
Sbjct: 65 RDTSNLLKNLQLIDGYNYTVIKGDFLKKMVTLTEKSFDIIFIDPPYLKYSLKDILEISSN 124
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+L+ +G L D S V + K Y
Sbjct: 125 SLRDDGILIVEDSSKVLPYENETFKIIDQRIY 156
>gi|254412907|ref|ZP_05026679.1| hypothetical protein MC7420_2067 [Microcoleus chthonoplastes PCC
7420]
gi|196180071|gb|EDX75063.1| hypothetical protein MC7420_2067 [Microcoleus chthonoplastes PCC
7420]
Length = 466
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
KG+ + ++ LP S I PPY + +
Sbjct: 264 KGSCLDLMPTLPDSSYHAIVTSPPYCNRYDYTRTY 298
Score = 40.0 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
AL+ +L ILDPF GSGT+ VA ++ + GIE+ +I T R
Sbjct: 57 FSAALVDYLLQRYGITNSTILDPFAGSGTALFVASEIGINAQGIELLPIGQEIITIR 113
>gi|86757495|gb|ABD15134.1| M1.BsrDI [Geobacillus stearothermophilus]
Length = 633
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 15/158 (9%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPYN--------- 50
K L E SI + I K +++S ++KL K + DL+F DPPY
Sbjct: 308 KFKKGLLFLEANPSIGDVS--IQKMDAVSGIKKLKEKGIKSDLLFLDPPYGDSVPYLEFS 365
Query: 51 -LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
L + PD + +V+D +K S+ Y + + + +L +G + V + +
Sbjct: 366 SLWNSFLSDFPDINQDISVSDRKNKNDSWNFYSSKLMELMKEAKDLLNKDGRVLVTFNNN 425
Query: 110 NIFRIGTMLQ-NLNFWILNDIVWRKSNPMPNFRGRRFQ 146
++ ++L+ + + V + + + + +
Sbjct: 426 DLKAWESLLRAFQSNGFRCEYVIYQIPAVISSKAQFSP 463
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+KP ++S L S T II+DPF GSG +L R G ++ + I+
Sbjct: 24 ARKPHNVISHFLESLTPDNGIIVDPFCGSGVVLREGSRLGRKVFGFDINPIALLIS 79
>gi|260581280|ref|ZP_05849097.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|2507512|sp|P44524|RLML_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|260092029|gb|EEW75975.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 711
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIFADPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFADPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELGLSAIE--ISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|325973677|ref|YP_004250741.1| DNA methylase N-4/N-6 domain-containing protein [Mycoplasma suis
str. Illinois]
gi|323652279|gb|ADX98361.1| DNA methylase N-4/N-6 domain-containing protein [Mycoplasma suis
str. Illinois]
Length = 245
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ R + + + + IL+ + GD++LD F G GT+ AK L R+
Sbjct: 16 WNFPNRGKWATHDAKYRGNWSPYIPRNILLRYSSEGDLVLDQFAGGGTTLVEAKLLNRNI 75
Query: 249 IGIEMKQDYID 259
IG+++ ++ +
Sbjct: 76 IGVDVNEESLK 86
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+KG++ L + ++S+DLI PPY ++ + V + +
Sbjct: 105 IVKGDARD-LNFIKSESIDLICTHPPY----ANIIHYSEGQ----VIEEDLSNLKVSEFL 155
Query: 83 AFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRI-------GTMLQNLNFWILNDIVWRKS 134
+ C RVLK N + ++G + + +++ F + I+ +
Sbjct: 156 EEMKKVAQECYRVLKKNKYCVILMGDTRKNGHMIPLSFDVMKLFEDVGFKLKELIIKAQH 215
Query: 135 NPMPNFRGRRFQNAHETLIWASPS 158
N + H L+ A
Sbjct: 216 NCKATGFWKTNSVKHNFLLIAHEY 239
>gi|257885935|ref|ZP_05665588.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257821791|gb|EEV48921.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
Length = 906
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 33 EKLPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
+L SVD IF DPP+ ++ L +S +A+ + + Y
Sbjct: 471 NELQENSVDYIFTDPPFGENIDYSELNFLWESWLKVFTNSSSEAIIND-SQNKGLFEYKQ 529
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+VLKPN + V S +
Sbjct: 530 LMEESFRNYFKVLKPNHWITVEFSNSKSSVWNAI 563
>gi|168212711|ref|ZP_02638336.1| type III restriction-modification system EcoPI enzyme mod
[Clostridium perfringens CPE str. F4969]
gi|170715893|gb|EDT28075.1| type III restriction-modification system EcoPI enzyme mod
[Clostridium perfringens CPE str. F4969]
Length = 526
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGY--TFNYDALKAANEDVQMRSDWLIP 187
+ + +F N + +I K Y T D + + + +
Sbjct: 187 ITDGKEMSWRWSKNKFINEYYNIIINENDGKFSIYKKTRPLDGERPSQKPKTLFYKPEYS 246
Query: 188 ICSGSERLRN-KDGEKLHPTQKPEALLSRI--LVSSTKPGDIILDPFFGSGTSGAVAKK- 243
+G+ ++ +GEKL KP L+ +VS + DIILD F GSGT+ +
Sbjct: 247 SGNGTNEIKQLFEGEKLFSNPKPTNLIIDFLRIVSFNEKEDIILDFFSGSGTTAHATMQL 306
Query: 244 -----LRRSFIGIEM 253
R FI +++
Sbjct: 307 NSEDNGNRKFIMVQL 321
Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 7/142 (4%)
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
+ L + +LK +G +++ + + + + + D + +
Sbjct: 31 HSDWMNMMYPRLKVAKDLLKDDGVIFISIDDNEVDNLKKICDEILG---EDNIVAILPTV 87
Query: 138 PNFRGRR----FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSE 193
N +G F HE + S + + + NE +
Sbjct: 88 MNLKGNNDQFGFAGTHEYTLVYCKSKNICEFGYLPIDDEKMNEWEYDEYGAFKKGANLKA 147
Query: 194 RLRNKDGEKLHPTQKPEALLSR 215
N EK P +
Sbjct: 148 TGVNAPREKRPNLFFPLYISKD 169
>gi|12232628|sp|P70986|MTB1_BACST RecName: Full=Modification methylase BsoBI; Short=M.BsoBI; AltName:
Full=N(4)- cytosine-specific methyltransferase BsoBI
gi|2113827|emb|CAA66933.1| BsoBI methylase [Geobacillus stearothermophilus]
Length = 509
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 28/71 (39%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
++ K + + + E ++IK ++++ L K+ + D + PPY + +
Sbjct: 275 LTIKEDIKEIQQKCLPNESVHELIKDSALNALPKINDNTFDAVITSPPYCNRYDYTRTYA 334
Query: 61 DHSLVDAVTDS 71
V +
Sbjct: 335 LELAYLGVDEK 345
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 17/136 (12%)
Query: 163 GYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST- 221
Y + + N + R + L+ ++
Sbjct: 48 KYIHIVEETETFNRKLVSYQANKNQSIHNWIRYKE---------GFSSELVQNLIEEFGL 98
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIE---MKQDYID----IATKRIASVQPLGNI 274
GD ILDPF GSGT+ AK L + IGI+ + + I + +
Sbjct: 99 SKGDTILDPFLGSGTTSLTAKMLGINSIGIDILPISHIAFEPKSFIFEYNLEELDRAYKE 158
Query: 275 ELTVLTGKRTEPRVAF 290
+ K +
Sbjct: 159 IYEISPTKIEQKFNHL 174
>gi|167933084|ref|ZP_02520171.1| DNA methylase N-4/N-6 domain protein [candidate division TM7
single-cell isolate TM7b]
Length = 176
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGS----ERLRNK-DGEKLHPTQKPEAL 212
K Y L + + ++ + + L+N E L KP L
Sbjct: 67 WGKRGSYPMVKRYLSDVQDGLVPQTIFTREFAGDNALANTELKNILKMESLFDYPKPTQL 126
Query: 213 LSRILVSST--KPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMK 254
+ R++ ST GD+ILD F GSGT+ + R +I +++
Sbjct: 127 IKRLMQISTDTNNGDVILDFFAGSGTTAHAVDELNAEDGGNRRWICVQLS 176
>gi|256028240|ref|ZP_05442074.1| DNA methylase N-4/N-6 [Fusobacterium sp. D11]
gi|289766172|ref|ZP_06525550.1| sensor protein fixL [Fusobacterium sp. D11]
gi|289717727|gb|EFD81739.1| sensor protein fixL [Fusobacterium sp. D11]
Length = 247
Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + + +++ T D+ILD F G GT+ AK L R+
Sbjct: 21 WSFKERGDWATHDAKWRGNWSPYIPRNLILRYTNEKDLILDQFIGGGTTLVEAKLLNRNI 80
Query: 249 IGIEMKQDYIDIATKRIASV 268
IGI++ I+ ++I
Sbjct: 81 IGIDVNDVAIERCKEKIDFE 100
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 32/166 (19%)
Query: 12 NQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVD 66
+ FE+++ I KG++ L + +++D I PPY N+ + D S +
Sbjct: 94 KEKIDFEFENSGKVYIHKGDARK-LNFIKNETIDFICTHPPYANIIKYSEDIEEDLSHLK 152
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF--- 123
+ + RVLK + ++ I L
Sbjct: 153 -----------IPEFLKEMKKVASESYRVLKKDKFCAILMGDTRIKGHIQPLGFEVMKVF 201
Query: 124 ---WILNDIVWRKSNPMPNFRGRRFQN---------AHETLIWASP 157
+ K G N AHE L
Sbjct: 202 EKVGFKLKEIIIKEQHNCKATGYWKTNSIKYNFFLIAHEYLFIFKK 247
>gi|289580852|ref|YP_003479318.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
gi|289530405|gb|ADD04756.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
Length = 366
Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
H QKP L + ++ +K GD +LDPF G G + A G+ + + +
Sbjct: 98 HGGQKPPRLCAELIGRFSKAGDTVLDPFAGVGGTLLGASFCEHEGTGL-REAIGFERTER 156
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
+ E R EP +A +
Sbjct: 157 WTEIYAEVLECE-NAERRDRGEPELAAQDM 185
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYN 50
G+ ++E++ SVDL+ D PY
Sbjct: 187 HGDCADLIEEVDDDSVDLLLTDVPYW 212
>gi|121608912|ref|YP_996719.1| hypothetical protein Veis_1948 [Verminephrobacter eiseniae EF01-2]
gi|121553552|gb|ABM57701.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
Length = 731
Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 19/110 (17%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDHSLVDA 67
I+ G+S + +P SVD + DPPY L + P + ++
Sbjct: 481 ILNGDSSKL--PIPDSSVDAVVTDPPYFDFVHYSELSDFFFAWLSPALRDRYPWFARENS 538
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ A+ + RVLK G + S+H+ G
Sbjct: 539 SDQGEVQHKDPRAFARQLASVFTEACRVLKDEGV--LAFSFHHSRAEGWA 586
Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
G ++LDPF GSGT+ A KL +G ++
Sbjct: 87 GMVVLDPFMGSGTTLGEAVKLGAKAVGSDINP 118
>gi|56550600|ref|YP_161666.1| putative DNA methyltransferase [Cupriavidus metallidurans CH34]
gi|56410306|emb|CAI30188.1| putative DNA methyltransferase [Cupriavidus metallidurans CH34]
Length = 86
Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
H +P + ++PGD+++DPF G+ +G A++L R + IAT+
Sbjct: 4 HGAMQPTDIPDFFTRFLSQPGDLVVDPFGGTIRTGLAAERLGRRW-----------IATE 52
Query: 264 RIASVQPLGNIELTVLTGKRTEP 286
I G + P
Sbjct: 53 WILQYARGAAELFRQFDGFQMHP 75
>gi|332798819|ref|YP_004460318.1| DNA methylase N-4/N-6 domain-containing protein [Tepidanaerobacter
sp. Re1]
gi|332696554|gb|AEE91011.1| DNA methylase N-4/N-6 domain protein [Tepidanaerobacter sp. Re1]
Length = 419
Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 4/143 (2%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ ++ + +R + E + L + T+ D + DPF G GT
Sbjct: 39 NKMKIPRFINEFWTSRQRQASPLHEVSYRACFKPQLPRFFINLLTEEKDTVYDPFSGRGT 98
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIATKRI----ASVQPLGNIELTVLTGKRTEPRVAFNL 292
+ A L R+ I ++ + R E+ R + ++
Sbjct: 99 TVIEAGILGRNIISNDINPLSRILTMPRFFVPDIDAVIERLAEIPYDKSARADIDLSMFY 158
Query: 293 LVERGLIQPGQILTNAQGNISAT 315
++ Q +
Sbjct: 159 HIDTETEIVSLKNYLKQRSFEGK 181
Score = 39.6 bits (91), Expect = 0.83, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 33 EKLPAKSVDLIFADPPYN--LQLNGQLY---RPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
++P +SV L PP+ +Q + + + + + ++ + E + +
Sbjct: 278 SEIPDESVSLTVTSPPFLDVVQYDKDNWLRCWFNDIDAEEIANNITMSRTIEEWSSVMLD 337
Query: 88 WLLACRRVLKPNGT 101
R+ K G
Sbjct: 338 VFKELYRITKKGGW 351
>gi|189485044|ref|YP_001955985.1| type II DNA modification methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287003|dbj|BAG13524.1| type II DNA modification methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 528
Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 15/163 (9%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ G E + + +++ + + N + +
Sbjct: 34 IQYGRIHKIGHNGSTQILKSELIKYYHSLNQSRENAWKNKLGQDLNWKLSFDNLKESDTT 93
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL---------VSSTKPGDIILDPFFGSGTSGAV 240
RL G+ L L DIILDPF GSGT+ A
Sbjct: 94 KHIHRLHPYKGK------FIPQLAEYFLDDHIDEFKKEKYFNKNDIILDPFCGSGTTLAQ 147
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
A +L IG+++ I +I + + + + +R
Sbjct: 148 ADELGMHAIGVDVSYFNSFITNCKINTYDVVSLEKNINIITER 190
>gi|126656565|ref|ZP_01727826.1| hypothetical protein CY0110_22717 [Cyanothece sp. CCY0110]
gi|126622251|gb|EAZ92958.1| hypothetical protein CY0110_22717 [Cyanothece sp. CCY0110]
Length = 182
Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
K+IKG+ + VL+ L K DLI+ DPPY L
Sbjct: 91 KVIKGDILKVLKTLNMKKFDLIYFDPPYQSGL 122
>gi|291531628|emb|CBK97213.1| DNA methylase [Eubacterium siraeum 70/3]
Length = 249
Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
+ I++ ++ GD++LD F G GT+ AK L R IGI++ D+A +R
Sbjct: 45 IPRNIILRYSQEGDLVLDQFAGGGTTLVEAKLLNRDIIGIDIN----DVALERCREKTDF 100
Query: 272 G 272
Sbjct: 101 D 101
Score = 44.3 bits (103), Expect = 0.034, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 14/110 (12%)
Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+ +K G++ L+ +P S+DLI PPY + D + +
Sbjct: 110 YINK---GDARH-LDSIPDDSIDLICTHPPYADIIKYS---------DGIDGDLSQLK-V 155
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ + + RVLK ++ + I D
Sbjct: 156 KEFLEQMKPVAEESYRVLKKGKFCAILMGDTRQKGCMIPMSFDVMKIFQD 205
>gi|7474394|pir||S72474 site-specific DNA-methyltransferase (cytosine-specific) (EC
2.1.1.73) BsoBI - Bacillus stearothermophilus
Length = 542
Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 28/71 (39%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
++ K + + + E ++IK ++++ L K+ + D + PPY + +
Sbjct: 275 LTIKEDIKEIQQKCLPNESVHELIKDSALNALPKINDNTFDAVITSPPYCNRYDYTRTYA 334
Query: 61 DHSLVDAVTDS 71
V +
Sbjct: 335 LELAYLGVDEK 345
>gi|325990121|ref|YP_004249820.1| DNA methylase [Mycoplasma suis KI3806]
gi|323575206|emb|CBZ40871.1| DNA methylase [Mycoplasma suis]
Length = 253
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
+ R + + + + IL+ + GD++LD F G GT+ AK L R+
Sbjct: 24 WNFPNRGKWATHDAKYRGNWSPYIPRNILLRYSSEGDLVLDQFAGGGTTLVEAKLLNRNI 83
Query: 249 IGIEMKQDYID 259
IG+++ ++ +
Sbjct: 84 IGVDVNEESLK 94
Score = 43.5 bits (101), Expect = 0.057, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+KG++ L + ++S+DLI PPY ++ + V + +
Sbjct: 113 IVKGDARD-LNFIKSESIDLICTHPPY----ANIIHYSEGQ----VIEEDLSNLKVSEFL 163
Query: 83 AFTRAWLLACRRVLKPN-GTLWVIGSYHNIFRI-------GTMLQNLNFWILNDIVWRKS 134
+ C RVLK N + ++G + + +++ F + I+ +
Sbjct: 164 EEMKKVAQECCRVLKKNKYCVILMGDTRKNGHMIPLSFDVMKLFEDVGFKLKELIIKAQH 223
Query: 135 NPMPNFRGRRFQNAHETLIWASPS 158
N + H L+ A
Sbjct: 224 NCKATGFWKTNSVKHNFLLIAHEY 247
>gi|188534239|ref|YP_001908036.1| 23S rRNA m(2)G2445 methyltransferase [Erwinia tasmaniensis Et1/99]
gi|229560154|sp|B2VDF6|RLML_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|188029281|emb|CAO97158.1| Conserved hypothetical protein YcbY [Erwinia tasmaniensis Et1/99]
Length = 705
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++++ + +S L + DLIF DPP R D S D
Sbjct: 580 NMRLNGLSGRQHRLMQADCLSWLRD-ADEQFDLIFIDPP----TFSNSKRMDES-FDVQR 633
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
D D +R+L+ NGT+ +
Sbjct: 634 DHLDLMKDL--------------KRLLRKNGTVMFSNNKR 659
>gi|119490747|ref|ZP_01623079.1| hypothetical protein L8106_03874 [Lyngbya sp. PCC 8106]
gi|119453731|gb|EAW34889.1| hypothetical protein L8106_03874 [Lyngbya sp. PCC 8106]
Length = 114
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 27/114 (23%)
Query: 32 LEKLPAKSVDLIFADPPYN------------LQLNGQLYRPDHSL------------VDA 67
++ LP + DPPYN +Q S
Sbjct: 1 MKSLPTNYISASITDPPYNYEFIGHKWNNPEIQRRLDKINTKESKTLVKNIPYGSGLAGG 60
Query: 68 VTDS---WDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
V + + Y+ + W R+ KP T+ V S + I L
Sbjct: 61 VRNKRWYERNRENILDYEKWCFEWGQELFRICKPGATVLVFNSTRTVAHIQVAL 114
>gi|330723415|gb|AEC45785.1| Site-specific DNA-methyltransferase, Adenine-specific [Mycoplasma
hyorhinis MCLD]
Length = 374
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 21/242 (8%)
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF----------TRAWLLAC-RRVLKP 98
N + L + S D+ D D+F Y T +L + + P
Sbjct: 47 NKKTFNYLKHNEQSFSDSGFDLKDEFFDERGYYRLVDLHRGSSASTFKYLESLDYEIEAP 106
Query: 99 NGTLW-VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+GT + + + + + + + ++ + +
Sbjct: 107 DGTFFKLFTNIKKPKSACYTWSYKTYLEGKKQGFIQVIKNNEEFWVAKRKQYQFVKFNPK 166
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
+ + + +++ S+ S +E + KP L+ ++
Sbjct: 167 TFEIETQVAGRRFNNVIDKNYNRLSNGFYTTKSANEITEVLFDKTAFNFAKPVGLMKYLI 226
Query: 218 VSSTKPGDI-ILDPFFGSGTSGAVAKK------LRRSFIGIEMKQDYI--DIATKRIASV 268
+ D+ +LD F GSGT+G + RSF+ + ++ I ++ +R+ +
Sbjct: 227 NLFSDKKDMRVLDFFAGSGTTGQAVLELNKEDGGNRSFVLVTNNENNIGQNVTYERLYRI 286
Query: 269 QP 270
Sbjct: 287 NK 288
>gi|227548167|ref|ZP_03978216.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Corynebacterium lipophiloflavum DSM 44291]
gi|227079728|gb|EEI17691.1| possible site-specific DNA-methyltransferase (adenine-specific)
[Corynebacterium lipophiloflavum DSM 44291]
Length = 386
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 197 NKDGEKLHPT-QKPEALLSRILVSSTKPGD--IILDPFFGSGTSGAVAKKLR------RS 247
++ G H T KP L+ ++ S T GD +++D F GS T+ +L R
Sbjct: 134 DELGLSRHFTYPKPVELVKTLIRSVTPKGDRPLVMDFFSGSATTADAVMQLNSEDDGDRR 193
Query: 248 FIGIEM 253
I +++
Sbjct: 194 CISVQI 199
>gi|281422927|ref|ZP_06253926.1| modification methylase MunI [Prevotella copri DSM 18205]
gi|281403019|gb|EFB33699.1| modification methylase MunI [Prevotella copri DSM 18205]
Length = 241
Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 59/189 (31%), Gaps = 14/189 (7%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW--DKFSSFEAYDAFTRA 87
+LP + D+I+ DPP++ G + D S + + W D F S + T
Sbjct: 43 EFYPELPEEKFDIIYCDPPWDY---GGKMQFDKSSIKSENKDWKRDIFISAANFKYPTVK 99
Query: 88 WLLACRRVLKP-NGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
+ ++ ++ + + +Q W N ++
Sbjct: 100 TKDLMKIPIQNICAEDCLLFMWVTNPHLAQGIQLGQAWGFEYKTVGFVWDKCNHNPGQYT 159
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPT 206
++ L + + + S E L+N EK+ PT
Sbjct: 160 LSNCELCLIFKKGRIPKPRGARNVQQLVRVPRTEHS------VKPIEVLKNI--EKMFPT 211
Query: 207 QKPEALLSR 215
QK L +R
Sbjct: 212 QKKIELFAR 220
>gi|15602169|ref|NP_245241.1| 23S rRNA m(2)G2445 methyltransferase [Pasteurella multocida subsp.
multocida str. Pm70]
gi|81856764|sp|Q9CNW9|RLML_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|12720539|gb|AAK02388.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 719
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + K+I+ + + L + + DLIF DPP S + DSWD
Sbjct: 598 NDLEGKQHKLIQADCLQWLARC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 644
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+PNGT+ +
Sbjct: 645 VQRDH-------IKLMTQLKRILRPNGTIVFSNNKR 673
>gi|260854240|ref|YP_003228131.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|260867120|ref|YP_003233522.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|257752889|dbj|BAI24391.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|257763476|dbj|BAI34971.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
gi|323157158|gb|EFZ43281.1| hypothetical protein ECEPECA14_0949 [Escherichia coli EPECa14]
gi|323175424|gb|EFZ61019.1| hypothetical protein ECOK1180_5708 [Escherichia coli 1180]
Length = 702
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|298380031|ref|ZP_06989636.1| RNA methylase [Escherichia coli FVEC1302]
gi|298279729|gb|EFI21237.1| RNA methylase [Escherichia coli FVEC1302]
Length = 689
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|292487860|ref|YP_003530735.1| hypothetical protein EAMY_1377 [Erwinia amylovora CFBP1430]
gi|292899086|ref|YP_003538455.1| RNA methylase [Erwinia amylovora ATCC 49946]
gi|291198934|emb|CBJ46044.1| putative RNA methylase [Erwinia amylovora ATCC 49946]
gi|291553282|emb|CBA20327.1| UPF0020/UPF0064 protein ycbY [Erwinia amylovora CFBP1430]
Length = 705
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++++ + +S L + + DLIF DPP
Sbjct: 580 NMRLNGLSGRQHRLMQADCLSWLRE-ADEQFDLIFIDPP---------------TFSNSK 623
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + +R+L+ NGT+ +
Sbjct: 624 RMEESFDVQRDHLELM----KDLKRLLRKNGTVMFSNNKR 659
>gi|218553535|ref|YP_002386448.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli IAI1]
gi|218360303|emb|CAQ97853.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli IAI1]
gi|323947262|gb|EGB43270.1| THUMP domain-containing protein [Escherichia coli H120]
Length = 702
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|157155561|ref|YP_001462181.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli E24377A]
gi|218694423|ref|YP_002402090.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 55989]
gi|300925371|ref|ZP_07141257.1| THUMP domain protein [Escherichia coli MS 182-1]
gi|301327224|ref|ZP_07220484.1| THUMP domain protein [Escherichia coli MS 78-1]
gi|229560149|sp|A7ZK52|RLML_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|157077591|gb|ABV17299.1| putative RNA methylase family UPF0020 [Escherichia coli E24377A]
gi|218351155|emb|CAU96859.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli 55989]
gi|300418500|gb|EFK01811.1| THUMP domain protein [Escherichia coli MS 182-1]
gi|300846175|gb|EFK73935.1| THUMP domain protein [Escherichia coli MS 78-1]
gi|324117187|gb|EGC11095.1| THUMP domain-containing protein [Escherichia coli E1167]
gi|332342392|gb|AEE55726.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 702
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|325978517|ref|YP_004288233.1| hypothetical protein SGGBAA2069_c13170 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|325178445|emb|CBZ48489.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 249
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADP 47
K ++I+ ++ LP KS D+++ DP
Sbjct: 151 KTYCADNITYMKSLPDKSFDVVYCDP 176
>gi|306831613|ref|ZP_07464771.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426398|gb|EFM29512.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 249
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADP 47
K ++I+ ++ LP KS D+++ DP
Sbjct: 151 KTYCADNITYMKSLPDKSFDVVYCDP 176
>gi|312171982|emb|CBX80239.1| UPF0020/UPF0064 protein ycbY [Erwinia amylovora ATCC BAA-2158]
Length = 705
Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++++ + +S L + + DLIF DPP
Sbjct: 580 NMRLNGLSGRQHRLMQADCLSWLRE-ADEQFDLIFIDPP---------------TFSNSK 623
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + +R+L+ NGT+ +
Sbjct: 624 RMEESFDVQRDHLELM----KDLKRLLRKNGTVMFSNNKR 659
>gi|295109966|emb|CBL23919.1| RNA methyltransferase, RsmD family [Ruminococcus obeum A2-162]
Length = 184
Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 22 KIIKGNSISVLEKLP-AKSVDLIFADPPYN 50
K++ + + L L ++ D IF DPPYN
Sbjct: 94 KLLNMDVLQALRSLEGEEAFDCIFMDPPYN 123
>gi|289581292|ref|YP_003479758.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
gi|289530845|gb|ADD05196.1| DNA methylase N-4/N-6 domain protein [Natrialba magadii ATCC 43099]
Length = 414
Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ S P G+E + + P AL + +L T P +LDPF G GT
Sbjct: 21 ETLPHSWREAPRAWGNELHKLAP----YVGGFPPALANYLLQQYTDPEMTVLDPFSGGGT 76
Query: 237 SGAVAKKLRRSFIGIEMKQDYIDIA 261
+ A L R + ++ +
Sbjct: 77 TALEASLLDRDVLASDVFSYACTLT 101
>gi|153810847|ref|ZP_01963515.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
gi|149833243|gb|EDM88325.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
Length = 184
Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 22 KIIKGNSISVLEKLP-AKSVDLIFADPPYN 50
K++ + + L L ++ D IF DPPYN
Sbjct: 94 KLLNMDVLQALRSLEGEEAFDCIFMDPPYN 123
>gi|312111959|ref|YP_003990275.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
gi|311217060|gb|ADP75664.1| DNA methylase N-4/N-6 domain protein [Geobacillus sp. Y4.1MC1]
Length = 595
Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSW 72
K+I G+S +++L +SV+ +F DPP+ N L + ++ +A+ +
Sbjct: 383 KVINGSSTK-MDELSDESVNYVFTDPPFGDYIPYSELNFLNEVWLGKKTNTEQEAIISN- 440
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ + Y RVL P+G + V+
Sbjct: 441 SQKKTVNDYQHLMEQVFKEISRVLTPDGKVTVVF 474
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+PT+ +++ + S TKPGD++LD F GSGT+G A
Sbjct: 27 YPTKISPEVIAVFIASHTKPGDVVLDTFGGSGTTGLAALLC 67
>gi|156934565|ref|YP_001438481.1| 23S rRNA m(2)G2445 methyltransferase [Cronobacter sakazakii ATCC
BAA-894]
gi|229560153|sp|A7MEX5|RLML_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|156532819|gb|ABU77645.1| hypothetical protein ESA_02399 [Cronobacter sakazakii ATCC BAA-894]
Length = 705
Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + +S L + + DLIF DPP + F
Sbjct: 591 HRLIQADCLSWLAE-SDEQFDLIFIDPP---------------TFSNSKRMEETFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ +GT+ + L L + + +K+
Sbjct: 635 HLRLM----KDLKRLLRRDGTIMFSNNKRGFKMDHEGLAALG--LKAQDITQKTLSQDFA 688
Query: 141 RGRRFQNAH 149
R R+ N
Sbjct: 689 RNRQIHNCW 697
>gi|191166960|ref|ZP_03028783.1| putative RNA methylase family UPF0020 [Escherichia coli B7A]
gi|193071757|ref|ZP_03052654.1| putative RNA methylase family UPF0020 [Escherichia coli E110019]
gi|209918200|ref|YP_002292284.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SE11]
gi|256018793|ref|ZP_05432658.1| 23S rRNA m(2)G2445 methyltransferase [Shigella sp. D9]
gi|260843197|ref|YP_003220975.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|293433245|ref|ZP_06661673.1| oxidoreductase [Escherichia coli B088]
gi|309795062|ref|ZP_07689482.1| THUMP domain protein [Escherichia coli MS 145-7]
gi|332279871|ref|ZP_08392284.1| 23S rRNA m(2) methyltransferase [Shigella sp. D9]
gi|190902954|gb|EDV62680.1| putative RNA methylase family UPF0020 [Escherichia coli B7A]
gi|192954931|gb|EDV85437.1| putative RNA methylase family UPF0020 [Escherichia coli E110019]
gi|209911459|dbj|BAG76533.1| putative oxidoreductase [Escherichia coli SE11]
gi|257758344|dbj|BAI29841.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|291324064|gb|EFE63486.1| oxidoreductase [Escherichia coli B088]
gi|308121366|gb|EFO58628.1| THUMP domain protein [Escherichia coli MS 145-7]
gi|323159579|gb|EFZ45559.1| hypothetical protein ECE128010_4195 [Escherichia coli E128010]
gi|323174945|gb|EFZ60560.1| hypothetical protein ECLT68_0502 [Escherichia coli LT-68]
gi|323185341|gb|EFZ70705.1| hypothetical protein ECOK1357_1294 [Escherichia coli 1357]
gi|324019040|gb|EGB88259.1| THUMP domain protein [Escherichia coli MS 117-3]
gi|332102223|gb|EGJ05569.1| 23S rRNA m(2) methyltransferase [Shigella sp. D9]
Length = 702
Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|304372977|ref|YP_003856186.1| Site-specific DNA-methyltransferase, Adenine-specific [Mycoplasma
hyorhinis HUB-1]
gi|304309168|gb|ADM21648.1| Site-specific DNA-methyltransferase, Adenine-specific [Mycoplasma
hyorhinis HUB-1]
Length = 370
Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 24/186 (12%), Positives = 63/186 (33%), Gaps = 10/186 (5%)
Query: 98 PNGTLW-VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWAS 156
P+GT + + + + + + + ++ + +
Sbjct: 106 PDGTFFKLFTNIKKPKSARYTWSYKTYLEGKKQGFIQVIKNNKGFWVAKRKQYQFVKFNP 165
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
+ + + +++ S+ S +E + KP L+ +
Sbjct: 166 KTFEIETQVAGRRFNNVIDKNYNRLSNGFYTTKSANEITEVLFDKTAFNFAKPVGLMKYL 225
Query: 217 LVSSTKPGDI-ILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYI--DIATKRIAS 267
+ + D+ +LD F GSGT+G +L RSF+ + ++ I ++ +R+
Sbjct: 226 INLFSDKKDMRVLDFFAGSGTTGQAVLELNKEDGGSRSFVLVTNNENNIGQNVTYERLYR 285
Query: 268 VQPLGN 273
+ +
Sbjct: 286 INKGQS 291
>gi|218548457|ref|YP_002382248.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia fergusonii ATCC
35469]
gi|218355998|emb|CAQ88614.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia fergusonii ATCC 35469]
Length = 702
Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|206889492|ref|YP_002248294.1| modification methylase MjaII [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741430|gb|ACI20487.1| modification methylase MjaII [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 538
Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 164 YTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSST 221
Y ++ + +W + E R K +LHP + L+ L S T
Sbjct: 69 YYDSFRNELYQKSSIFKDINWHLSFSEYKESERTKHVHRLHPYKGKFIPQLVEYFLDSHT 128
Query: 222 ---------KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
K DI+LDPF GSGT+ A +L +GI++ I+ +I +
Sbjct: 129 DEFKKEVYFKKDDIVLDPFCGSGTTLVQANELGIHAVGIDVSYFNSLISNIKIKKHE 185
>gi|193064614|ref|ZP_03045693.1| putative RNA methylase family UPF0020 [Escherichia coli E22]
gi|192927671|gb|EDV82286.1| putative RNA methylase family UPF0020 [Escherichia coli E22]
Length = 702
Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|288905527|ref|YP_003430749.1| hypothetical protein GALLO_1328 [Streptococcus gallolyticus UCN34]
gi|288732253|emb|CBI13820.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
Length = 253
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADP 47
K ++I+ ++ LP KS D+++ DP
Sbjct: 151 KTYCADNITYMKSLPDKSFDVVYCDP 176
>gi|260913816|ref|ZP_05920291.1| N6-adenine-specific DNA methytransferase [Pasteurella dagmatis ATCC
43325]
gi|260632129|gb|EEX50305.1| N6-adenine-specific DNA methytransferase [Pasteurella dagmatis ATCC
43325]
Length = 718
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + K+I+ + + LE+ + DLIF DPP S + DSWD
Sbjct: 599 NDLEGKQHKLIQADCLQWLERC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 645
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+PNGT+ +
Sbjct: 646 VQRDH-------IKLMTNLKRILRPNGTIVFSNNKR 674
>gi|302384742|ref|YP_003820564.1| modification methylase [Clostridium saccharolyticum WM1]
gi|302195370|gb|ADL02941.1| modification methylase [Clostridium saccharolyticum WM1]
Length = 420
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 18/65 (27%)
Query: 4 KNSLAINENQNS-IFEWKDKI-----------------IKGNSISVLEKLPAKSVDLIFA 45
K S I+E QN+ + ++ +KI G+SI +++ S D+I
Sbjct: 186 KESEKISEMQNNVLEDFFNKIKETYKLIGYPKLGPFHLTCGDSIEIMKTYKPNSFDIICT 245
Query: 46 DPPYN 50
PPY
Sbjct: 246 SPPYG 250
>gi|319776006|ref|YP_004138494.1| methyltransferase [Haemophilus influenzae F3047]
gi|317450597|emb|CBY86814.1| predicted methyltransferase [Haemophilus influenzae F3047]
Length = 711
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I + K+I+ + + LEK + DLIF DPP S + DSWD
Sbjct: 593 NNIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + K
Sbjct: 640 VQRDH-------VKLMRNLKRVLLNNGTIVFSNNKRGFKMNLVALEELG--FSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFKRNKQIHNCW 706
>gi|88811247|ref|ZP_01126503.1| hypothetical protein NB231_10603 [Nitrococcus mobilis Nb-231]
gi|88791786|gb|EAR22897.1| hypothetical protein NB231_10603 [Nitrococcus mobilis Nb-231]
Length = 921
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 35 LPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
LP S+D +F DPP+ N + + +A+ D + K + Y
Sbjct: 489 LPDASIDYVFTDPPFGENIYYADLNFLVESWHGVTTDAQPEAIIDRFKK-KALPEYQHLM 547
Query: 86 RAWLLACRRVLKPNGTLWVIGS 107
+ RVLKP + V+ S
Sbjct: 548 QRCFAEYHRVLKPGRWMTVVFS 569
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 196 RNKDGEKLHP--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ K H T+ P + ++ TKPGDI+LD F GSG +G A+
Sbjct: 106 KTDPIYKAHSYHTKVPHLAIVPSILHYTKPGDIVLDGFAGSGMTGVAAQWCG 157
>gi|260597346|ref|YP_003209917.1| 23S rRNA m(2)G2445 methyltransferase [Cronobacter turicensis z3032]
gi|260216523|emb|CBA29716.1| Ribosomal RNA large subunit methyltransferase L [Cronobacter
turicensis z3032]
Length = 705
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + +S L + + DLIF DPP + F
Sbjct: 591 HRLIQADCLSWLAE-SDEQFDLIFIDPP---------------TFSNSKRMEETFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ +GT+ + L L + + +K+
Sbjct: 635 HLRLM----KDLKRLLRRDGTIMFSNNKRGFKMDHEGLAALG--LKAQDITQKTLSQDFA 688
Query: 141 RGRRFQNAH 149
R R+ N
Sbjct: 689 RNRQIHNCW 697
>gi|253774023|ref|YP_003036854.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161062|ref|YP_003044170.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli B str.
REL606]
gi|242376763|emb|CAQ31476.1| 23S rRNA m[2]G2445 methyltransferase [Escherichia coli BL21(DE3)]
gi|253325067|gb|ACT29669.1| putative RNA methylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972963|gb|ACT38634.1| predicted methyltransferase [Escherichia coli B str. REL606]
gi|253977177|gb|ACT42847.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|332095880|gb|EGJ00887.1| hypothetical protein SD15574_1293 [Shigella dysenteriae 155-74]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|323967195|gb|EGB62619.1| THUMP domain-containing protein [Escherichia coli M863]
gi|324113728|gb|EGC07703.1| THUMP domain-containing protein [Escherichia fergusonii B253]
gi|327253740|gb|EGE65369.1| hypothetical protein ECSTEC7V_1165 [Escherichia coli STEC_7v]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|207111602|ref|ZP_03245764.1| type II DNA modification (methyltransferase [Helicobacter pylori
HPKX_438_CA4C1]
Length = 43
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ + D I DPF GSGT+ A L R +G+E++++Y
Sbjct: 1 CIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYC 43
>gi|82544728|ref|YP_408675.1| 23S rRNA m(2)G2445 methyltransferase [Shigella boydii Sb227]
gi|123559168|sp|Q31YL1|RLML_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|81246139|gb|ABB66847.1| putative oxidoreductase [Shigella boydii Sb227]
gi|320187159|gb|EFW61860.1| putative RNA methylase family UPF0020 [Shigella flexneri CDC
796-83]
gi|332093430|gb|EGI98488.1| hypothetical protein SB359474_2639 [Shigella boydii 3594-74]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|187734195|ref|YP_001880855.1| 23S rRNA m(2)G2445 methyltransferase [Shigella boydii CDC 3083-94]
gi|238691686|sp|B2TUD1|RLML_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|187431187|gb|ACD10461.1| putative RNA methylase family UPF0020 [Shigella boydii CDC 3083-94]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|320176238|gb|EFW51299.1| putative RNA methylase [Shigella dysenteriae CDC 74-1112]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|212224040|ref|YP_002307276.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
onnurineus NA1]
gi|212008997|gb|ACJ16379.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
onnurineus NA1]
Length = 331
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 196 RNKDGEKLHPTQK--PEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
++ + K H P +L RI LV+ TK + ILDPF G+G A + G
Sbjct: 147 KDFERRKAHHRPFFRPISLHPRISRALVNLTKAREEILDPFMGAGGILMEAGLIGLKVYG 206
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
+++K + ++ A + K E
Sbjct: 207 VDIKPEMVEGARLNLEHFGVKDYELRLGDATKLEELFPDKKF 248
>gi|148656408|ref|YP_001276613.1| hypothetical protein RoseRS_2284 [Roseiflexus sp. RS-1]
gi|148568518|gb|ABQ90663.1| hypothetical protein RoseRS_2284 [Roseiflexus sp. RS-1]
Length = 450
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 208 KPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
P L+ L +LDPF G+GT+ KKL +GIE +A +I
Sbjct: 47 FPPHLVREYLKRFGINSRHRVLDPFCGAGTTIVECKKLGIPAVGIEANPLAHFVAQVKID 106
Query: 267 SVQPLGNIELT 277
P + +
Sbjct: 107 -WSPDPDELIQ 116
>gi|82776239|ref|YP_402588.1| 23S rRNA m(2)G2445 methyltransferase [Shigella dysenteriae Sd197]
gi|309786680|ref|ZP_07681300.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|123563027|sp|Q32HV8|RLML_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|81240387|gb|ABB61097.1| putative oxidoreductase [Shigella dysenteriae Sd197]
gi|308925373|gb|EFP70860.1| conserved hypothetical protein [Shigella dysenteriae 1617]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|323976672|gb|EGB71760.1| THUMP domain-containing protein [Escherichia coli TW10509]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|293409326|ref|ZP_06652902.1| conserved hypothetical protein [Escherichia coli B354]
gi|300824163|ref|ZP_07104282.1| THUMP domain protein [Escherichia coli MS 119-7]
gi|300902889|ref|ZP_07120834.1| THUMP domain protein [Escherichia coli MS 84-1]
gi|300921012|ref|ZP_07137399.1| THUMP domain protein [Escherichia coli MS 115-1]
gi|301023076|ref|ZP_07186883.1| THUMP domain protein [Escherichia coli MS 69-1]
gi|301302436|ref|ZP_07208567.1| THUMP domain protein [Escherichia coli MS 124-1]
gi|331651970|ref|ZP_08352989.1| putative oxidoreductase [Escherichia coli M718]
gi|331662359|ref|ZP_08363282.1| putative oxidoreductase [Escherichia coli TA143]
gi|331667330|ref|ZP_08368195.1| putative oxidoreductase [Escherichia coli TA271]
gi|331676738|ref|ZP_08377434.1| putative oxidoreductase [Escherichia coli H591]
gi|331682452|ref|ZP_08383071.1| putative oxidoreductase [Escherichia coli H299]
gi|284920792|emb|CBG33855.1| putative RNA methylase [Escherichia coli 042]
gi|291469794|gb|EFF12278.1| conserved hypothetical protein [Escherichia coli B354]
gi|300397197|gb|EFJ80735.1| THUMP domain protein [Escherichia coli MS 69-1]
gi|300405031|gb|EFJ88569.1| THUMP domain protein [Escherichia coli MS 84-1]
gi|300412003|gb|EFJ95313.1| THUMP domain protein [Escherichia coli MS 115-1]
gi|300523339|gb|EFK44408.1| THUMP domain protein [Escherichia coli MS 119-7]
gi|300842275|gb|EFK70035.1| THUMP domain protein [Escherichia coli MS 124-1]
gi|315257995|gb|EFU37963.1| THUMP domain protein [Escherichia coli MS 85-1]
gi|325496879|gb|EGC94738.1| hypothetical protein ECD227_0976 [Escherichia fergusonii ECD227]
gi|331050248|gb|EGI22306.1| putative oxidoreductase [Escherichia coli M718]
gi|331060781|gb|EGI32745.1| putative oxidoreductase [Escherichia coli TA143]
gi|331065686|gb|EGI37579.1| putative oxidoreductase [Escherichia coli TA271]
gi|331075427|gb|EGI46725.1| putative oxidoreductase [Escherichia coli H591]
gi|331080083|gb|EGI51262.1| putative oxidoreductase [Escherichia coli H299]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|229818719|ref|YP_002880245.1| RNA methylase [Beutenbergia cavernae DSM 12333]
gi|229564632|gb|ACQ78483.1| putative RNA methylase [Beutenbergia cavernae DSM 12333]
Length = 348
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 24/93 (25%)
Query: 31 VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD-AFTRAWL 89
VL +P SVD++ DPP W +F S A D F A L
Sbjct: 241 VLASVPDGSVDVVVTDPP-----------------------WGEFESGPAPDEEFFAATL 277
Query: 90 LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
+ RRVL+P G L ++ S + + +
Sbjct: 278 TSMRRVLRPRGRLAMLLSRRLVRDVRAQWIDHG 310
>gi|330959487|gb|EGH59747.1| putative restriction-modification methylase [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 87
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
H +P ++ ++ T+ GD+++DP+ G +G A+ L R++I E Y+ A
Sbjct: 4 HGAGQPFSVAEFLIKYLTEEGDLVVDPWGGRSMTGLAAEMLNRTWITGERALQYVRGA 61
>gi|306812605|ref|ZP_07446798.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli NC101]
gi|305853368|gb|EFM53807.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli NC101]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|222032672|emb|CAP75411.1| UPF0020/UPF0064 protein ycbY [Escherichia coli LF82]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|146343968|ref|YP_001201824.1| putative restriction-modification methylase [Pseudomonas
fluorescens SBW25]
gi|146187780|emb|CAM96108.1| putative restriction-modification methylase [Pseudomonas
fluorescens SBW25]
Length = 426
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
H +P ++ ++ T+ GD+++DP+ G +G A+ L R++I E Y+ A
Sbjct: 343 HGAGQPFSVAEFLIKYLTEEGDLVVDPWGGRSMTGLAAEMLNRTWITGERALQYVRGA 400
>gi|91210043|ref|YP_540029.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UTI89]
gi|117623159|ref|YP_852072.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli APEC O1]
gi|218557846|ref|YP_002390759.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli S88]
gi|237707069|ref|ZP_04537550.1| YcbY [Escherichia sp. 3_2_53FAA]
gi|122424335|sp|Q1RDR6|RLML_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|229560151|sp|A1A9L8|RLML_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|91071617|gb|ABE06498.1| hypothetical protein YcbY [Escherichia coli UTI89]
gi|115512283|gb|ABJ00358.1| YcbY [Escherichia coli APEC O1]
gi|218364615|emb|CAR02301.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli S88]
gi|226898279|gb|EEH84538.1| YcbY [Escherichia sp. 3_2_53FAA]
gi|294489485|gb|ADE88241.1| putative RNA methylase family UPF0020 [Escherichia coli IHE3034]
gi|307627632|gb|ADN71936.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UM146]
gi|315287572|gb|EFU46978.1| THUMP domain protein [Escherichia coli MS 110-3]
gi|323953350|gb|EGB49216.1| THUMP domain-containing protein [Escherichia coli H252]
gi|323958247|gb|EGB53956.1| THUMP domain-containing protein [Escherichia coli H263]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|15800807|ref|NP_286823.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7
EDL933]
gi|15830286|ref|NP_309059.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
Sakai]
gi|168762913|ref|ZP_02787920.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4501]
gi|168776197|ref|ZP_02801204.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4196]
gi|168783959|ref|ZP_02808966.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4076]
gi|168787379|ref|ZP_02812386.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC869]
gi|168802930|ref|ZP_02827937.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC508]
gi|195939638|ref|ZP_03085020.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
EC4024]
gi|208809391|ref|ZP_03251728.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4206]
gi|208816186|ref|ZP_03257365.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4045]
gi|209398993|ref|YP_002269617.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4115]
gi|217324956|ref|ZP_03441040.1| UPF0020, RNA methylase family [Escherichia coli O157:H7 str.
TW14588]
gi|254792148|ref|YP_003076985.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|261227451|ref|ZP_05941732.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256126|ref|ZP_05948659.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
FRIK966]
gi|291281948|ref|YP_003498766.1| putative RNA methylase family UPF0020 [Escherichia coli O55:H7 str.
CB9615]
gi|81849038|sp|Q8XDB2|RLML_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238056566|sp|B5YT79|RLML_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|12514130|gb|AAG55434.1|AE005285_1 putative oxidoreductase [Escherichia coli O157:H7 str. EDL933]
gi|13360492|dbj|BAB34455.1| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai]
gi|187768361|gb|EDU32205.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4196]
gi|188998771|gb|EDU67757.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4076]
gi|189366794|gb|EDU85210.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4501]
gi|189372718|gb|EDU91134.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC869]
gi|189375248|gb|EDU93664.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC508]
gi|208729192|gb|EDZ78793.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4206]
gi|208732834|gb|EDZ81522.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4045]
gi|209160393|gb|ACI37826.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4115]
gi|209774528|gb|ACI85576.1| putative oxidoreductase [Escherichia coli]
gi|209774530|gb|ACI85577.1| putative oxidoreductase [Escherichia coli]
gi|209774532|gb|ACI85578.1| putative oxidoreductase [Escherichia coli]
gi|209774534|gb|ACI85579.1| putative oxidoreductase [Escherichia coli]
gi|209774536|gb|ACI85580.1| putative oxidoreductase [Escherichia coli]
gi|217321177|gb|EEC29601.1| UPF0020, RNA methylase family [Escherichia coli O157:H7 str.
TW14588]
gi|254591548|gb|ACT70909.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|290761821|gb|ADD55782.1| Putative RNA methylase family UPF0020 [Escherichia coli O55:H7 str.
CB9615]
gi|320192563|gb|EFW67204.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. EC1212]
gi|320637816|gb|EFX07608.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
G5101]
gi|320642941|gb|EFX12142.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H- str.
493-89]
gi|320648398|gb|EFX17053.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H- str.
H 2687]
gi|320653714|gb|EFX21788.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320664328|gb|EFX31479.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
LSU-61]
gi|326338155|gb|EGD61984.1| putative RNA methylase [Escherichia coli O157:H7 str. 1125]
gi|326346132|gb|EGD69870.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. 1044]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|16128915|ref|NP_415468.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Escherichia coli
str. K-12 substr. MG1655]
gi|89107798|ref|AP_001578.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
W3110]
gi|157160469|ref|YP_001457787.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli HS]
gi|170020651|ref|YP_001725605.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli ATCC 8739]
gi|170080606|ref|YP_001729926.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli str. K-12
substr. DH10B]
gi|188492332|ref|ZP_02999602.1| putative methyltransferase [Escherichia coli 53638]
gi|194440185|ref|ZP_03072229.1| putative RNA methylase family UPF0020 [Escherichia coli 101-1]
gi|238900206|ref|YP_002926002.1| putative methyltransferase [Escherichia coli BW2952]
gi|256023350|ref|ZP_05437215.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia sp. 4_1_40B]
gi|300929647|ref|ZP_07145108.1| THUMP domain protein [Escherichia coli MS 187-1]
gi|300955398|ref|ZP_07167774.1| THUMP domain protein [Escherichia coli MS 175-1]
gi|301022470|ref|ZP_07186349.1| THUMP domain protein [Escherichia coli MS 196-1]
gi|301643471|ref|ZP_07243519.1| THUMP domain protein [Escherichia coli MS 146-1]
gi|312971081|ref|ZP_07785260.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|2501582|sp|P75864|RLML_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|229560150|sp|B1X8Q2|RLML_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238686818|sp|A7ZYQ0|RLML_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238688381|sp|B1IVY4|RLML_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|1787181|gb|AAC74034.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Escherichia coli
str. K-12 substr. MG1655]
gi|4062515|dbj|BAA35703.1| predicted methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|157066149|gb|ABV05404.1| putative RNA methylase family UPF0020 [Escherichia coli HS]
gi|169755579|gb|ACA78278.1| putative RNA methylase [Escherichia coli ATCC 8739]
gi|169888441|gb|ACB02148.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli str. K-12
substr. DH10B]
gi|188487531|gb|EDU62634.1| putative methyltransferase [Escherichia coli 53638]
gi|194420882|gb|EDX36925.1| putative RNA methylase family UPF0020 [Escherichia coli 101-1]
gi|238862667|gb|ACR64665.1| predicted methyltransferase [Escherichia coli BW2952]
gi|260449906|gb|ACX40328.1| putative RNA methylase [Escherichia coli DH1]
gi|299881233|gb|EFI89444.1| THUMP domain protein [Escherichia coli MS 196-1]
gi|300317687|gb|EFJ67471.1| THUMP domain protein [Escherichia coli MS 175-1]
gi|300462424|gb|EFK25917.1| THUMP domain protein [Escherichia coli MS 187-1]
gi|301078185|gb|EFK92991.1| THUMP domain protein [Escherichia coli MS 146-1]
gi|309701227|emb|CBJ00527.1| putative RNA methylase [Escherichia coli ETEC H10407]
gi|310336842|gb|EFQ02009.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|315135596|dbj|BAJ42755.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli DH1]
gi|315619145|gb|EFU99725.1| conserved hypothetical protein [Escherichia coli 3431]
gi|323938054|gb|EGB34316.1| THUMP domain-containing protein [Escherichia coli E1520]
gi|323942864|gb|EGB39029.1| THUMP domain-containing protein [Escherichia coli E482]
gi|323962835|gb|EGB58410.1| THUMP domain-containing protein [Escherichia coli H489]
gi|323973175|gb|EGB68367.1| THUMP domain-containing protein [Escherichia coli TA007]
Length = 702
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|328953049|ref|YP_004370383.1| protein of unknown function DUF1156 [Desulfobacca acetoxidans DSM
11109]
gi|328453373|gb|AEB09202.1| protein of unknown function DUF1156 [Desulfobacca acetoxidans DSM
11109]
Length = 1074
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 26/122 (21%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY--NLQL----NGQLYRPDHSLVDAVTDSWDKF 75
I+ G + + + ++P +SVDL+ DPPY N+Q + +L D + +++
Sbjct: 646 TILHGTA-AHMPQVPDRSVDLVCMDPPYYNNVQYAELSDYFYVWQKRTLKDLYPELFNRR 704
Query: 76 SSFE-------------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
+ + AY+ CRRVLK G L ++ ++ +
Sbjct: 705 LTNKQEEAVANPARDGSAKGAKTAYERMMGEIFAECRRVLKDEGLLTLMFTHKSQDAWEA 764
Query: 117 ML 118
++
Sbjct: 765 LI 766
>gi|333001212|gb|EGK20780.1| hypothetical protein SFVA6_2930 [Shigella flexneri VA-6]
gi|333008933|gb|EGK28393.1| hypothetical protein SFK272_1451 [Shigella flexneri K-272]
gi|333020245|gb|EGK39515.1| hypothetical protein SFK227_1180 [Shigella flexneri K-227]
Length = 702
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|312945461|gb|ADR26288.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O83:H1 str.
NRG 857C]
Length = 702
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|331657013|ref|ZP_08357975.1| putative oxidoreductase [Escherichia coli TA206]
gi|315296242|gb|EFU55549.1| THUMP domain protein [Escherichia coli MS 16-3]
gi|331055261|gb|EGI27270.1| putative oxidoreductase [Escherichia coli TA206]
Length = 702
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|300819191|ref|ZP_07099392.1| THUMP domain protein [Escherichia coli MS 107-1]
gi|300528210|gb|EFK49272.1| THUMP domain protein [Escherichia coli MS 107-1]
Length = 702
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|300937703|ref|ZP_07152505.1| THUMP domain protein [Escherichia coli MS 21-1]
gi|300457264|gb|EFK20757.1| THUMP domain protein [Escherichia coli MS 21-1]
Length = 702
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|218704371|ref|YP_002411890.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UMN026]
gi|293404247|ref|ZP_06648241.1| rlmL [Escherichia coli FVEC1412]
gi|300896327|ref|ZP_07114870.1| THUMP domain protein [Escherichia coli MS 198-1]
gi|218431468|emb|CAR12346.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli UMN026]
gi|291428833|gb|EFF01858.1| rlmL [Escherichia coli FVEC1412]
gi|300359792|gb|EFJ75662.1| THUMP domain protein [Escherichia coli MS 198-1]
Length = 702
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|26246969|ref|NP_753009.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli CFT073]
gi|215486066|ref|YP_002328497.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|218688784|ref|YP_002396996.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli ED1a]
gi|227884093|ref|ZP_04001898.1| N6-adenine-specific DNA methytransferase [Escherichia coli 83972]
gi|300978391|ref|ZP_07174242.1| THUMP domain protein [Escherichia coli MS 45-1]
gi|301047795|ref|ZP_07194848.1| THUMP domain protein [Escherichia coli MS 185-1]
gi|312968993|ref|ZP_07783200.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|81846697|sp|Q8FJ88|RLML_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|26107369|gb|AAN79552.1|AE016758_156 Hypothetical protein ycbY [Escherichia coli CFT073]
gi|215264138|emb|CAS08482.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|218426348|emb|CAR07173.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli ED1a]
gi|227838845|gb|EEJ49311.1| N6-adenine-specific DNA methytransferase [Escherichia coli 83972]
gi|300300327|gb|EFJ56712.1| THUMP domain protein [Escherichia coli MS 185-1]
gi|300409679|gb|EFJ93217.1| THUMP domain protein [Escherichia coli MS 45-1]
gi|307552780|gb|ADN45555.1| putative oxidoreductase [Escherichia coli ABU 83972]
gi|312286395|gb|EFR14308.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|315291202|gb|EFU50562.1| THUMP domain protein [Escherichia coli MS 153-1]
Length = 702
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|300949682|ref|ZP_07163664.1| THUMP domain protein [Escherichia coli MS 116-1]
gi|300450922|gb|EFK14542.1| THUMP domain protein [Escherichia coli MS 116-1]
Length = 702
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|207110521|ref|ZP_03244683.1| putative type III restriction enzyme M protein [Helicobacter
pylori HPKX_438_CA4C1]
Length = 76
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 21 DKIIKGNSISVLEKLPAK---SVDLIFADPPYNLQLNGQLYRPD 61
+ +IKGN++ L L K V I+ DPPYN + Y +
Sbjct: 22 NYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDN 65
>gi|323190762|gb|EFZ76031.1| hypothetical protein ECRN5871_1001 [Escherichia coli RN587/1]
Length = 702
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|157369986|ref|YP_001477975.1| 23S rRNA m(2)G2445 methyltransferase [Serratia proteamaculans 568]
gi|229560171|sp|A8GCK7|RLML_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|157321750|gb|ABV40847.1| putative RNA methylase [Serratia proteamaculans 568]
Length = 706
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 22/140 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++I + +S ++ + D+IF DPP R +++
Sbjct: 580 NLRVNGLTGKQHRLIHADCLSWMQN-ADEQFDVIFIDPP----TFSNSKRMENT------ 628
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F + A + +R+L+ NGT+ + L L
Sbjct: 629 -----FDVQRDHLALMQD----LKRLLRRNGTIMFSNNKRGFQMDMAGLSALGLEAKE-- 677
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
+ ++ R R+ N
Sbjct: 678 ITAQTQSQDFARNRQIHNCW 697
>gi|300813394|ref|ZP_07093745.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300512537|gb|EFK39686.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 422
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 9/81 (11%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYR 59
++++ I + + ++ + +S + +++ S+DL+ PPY +
Sbjct: 209 INKEIKKDIQSIKKTAQNNQNILFNEDSRVGIEKEVENNSIDLVITSPPYLNSRDYTDTY 268
Query: 60 PDHSLVDAVTDSWDKFSSFEA 80
+T+++++ +
Sbjct: 269 MLELKTLGLTNTYEEVRNLRE 289
Score = 35.8 bits (81), Expect = 9.9, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 16/119 (13%)
Query: 158 SPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL 217
K Y Y + N++ + P G + + I+
Sbjct: 1 MFKYVDYYQEYGRIMQFNKNKKEPIHRWYPFVEGYSK----------------EFIKSII 44
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
K + L+PF GSGT+ + E+ IA ++ + L +EL
Sbjct: 45 DEVNKKDLVCLEPFSGSGTTSLELQHNNIPCYSFEINPLMYIIAKVKLENDYDLNKVEL 103
>gi|281178072|dbj|BAI54402.1| putative oxidoreductase [Escherichia coli SE15]
Length = 702
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|320181982|gb|EFW56887.1| putative RNA methylase family UPF0020 [Shigella boydii ATCC 9905]
Length = 702
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|307311665|ref|ZP_07591305.1| putative RNA methylase [Escherichia coli W]
gi|306908220|gb|EFN38719.1| putative RNA methylase [Escherichia coli W]
gi|315060233|gb|ADT74560.1| predicted methyltransferase [Escherichia coli W]
gi|323379207|gb|ADX51475.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli KO11]
Length = 702
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFEVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|224502231|ref|ZP_03670538.1| hypothetical protein LmonFR_06874 [Listeria monocytogenes FSL
R2-561]
gi|255030197|ref|ZP_05302148.1| hypothetical protein LmonL_15936 [Listeria monocytogenes LO28]
Length = 37
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
++KI+ + ++ + K+ S+D+I D PY
Sbjct: 2 ENKILNEDCLTGMLKIKDNSIDMILCDLPY 31
>gi|24112361|ref|NP_706871.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 2a str.
301]
gi|30062485|ref|NP_836656.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 2a str.
2457T]
gi|110804964|ref|YP_688484.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 5 str.
8401]
gi|81839435|sp|Q83RX5|RLML_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|123048306|sp|Q0T686|RLML_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|24051228|gb|AAN42578.1| putative oxidoreductase [Shigella flexneri 2a str. 301]
gi|30040731|gb|AAP16462.1| putative oxidoreductase [Shigella flexneri 2a str. 2457T]
gi|110614512|gb|ABF03179.1| putative oxidoreductase [Shigella flexneri 5 str. 8401]
gi|281600310|gb|ADA73294.1| putative oxidoreductase [Shigella flexneri 2002017]
gi|313650804|gb|EFS15205.1| RNA methylase family UPF0020 family protein [Shigella flexneri 2a
str. 2457T]
gi|332759043|gb|EGJ89353.1| hypothetical protein SF434370_1210 [Shigella flexneri 4343-70]
gi|332759960|gb|EGJ90261.1| hypothetical protein SF274771_1235 [Shigella flexneri 2747-71]
gi|332762730|gb|EGJ92993.1| hypothetical protein SFK671_1125 [Shigella flexneri K-671]
gi|332767742|gb|EGJ97933.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|333006323|gb|EGK25832.1| hypothetical protein SFK218_1429 [Shigella flexneri K-218]
gi|333019962|gb|EGK39233.1| hypothetical protein SFK304_1289 [Shigella flexneri K-304]
Length = 702
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|329766161|ref|ZP_08257720.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137432|gb|EGG41709.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 315
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 202 KLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HP + L ++ + K G+++ DPF G+GT+ A+ + IG++ + I
Sbjct: 156 KKHPHELDWKLTRSMINLIGLKEGEVVCDPFCGTGTTLLEAESMGIHAIGLDFDEKMFKI 215
Query: 261 ATKRIA 266
+ + +
Sbjct: 216 SKENLD 221
>gi|159027576|emb|CAO86949.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 181
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 17 FEWKD--------KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
W++ + I+G+ ++ L L KS DLI+ DPPY L
Sbjct: 78 ENWRNLATSHQQFQAIRGDVLTKLATLAGKSFDLIYFDPPYESGL 122
>gi|86757496|gb|ABD15135.1| M2.BsrDI [Geobacillus stearothermophilus]
Length = 425
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 32/97 (32%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G + + P + S ++ T D++ D GSGT+G A L R ++
Sbjct: 66 HGAFRYFGKFPPPIASYLIQEYTLKDDLVWDLMCGSGTTGVEAILLNRFCNLNDVNPLSR 125
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
I+ + + +P VE
Sbjct: 126 LISRVKTRYIDKEVLENAMQRIINNYKPLTKEQYWVE 162
>gi|331672477|ref|ZP_08373267.1| putative oxidoreductase [Escherichia coli TA280]
gi|331070383|gb|EGI41748.1| putative oxidoreductase [Escherichia coli TA280]
Length = 705
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|331646207|ref|ZP_08347310.1| putative oxidoreductase [Escherichia coli M605]
gi|330910721|gb|EGH39231.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Escherichia coli
AA86]
gi|331044959|gb|EGI17086.1| putative oxidoreductase [Escherichia coli M605]
Length = 702
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|225620140|ref|YP_002721397.1| hypothetical protein BHWA1_01213 [Brachyspira hyodysenteriae WA1]
gi|225214959|gb|ACN83693.1| hypothetical protein BHWA1_01213 [Brachyspira hyodysenteriae WA1]
Length = 246
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 13/130 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I K ++ + + + VD +F DPPY+ +N + + A + Y
Sbjct: 90 IFKADARKI--PIEDEKVDFVFIDPPYSTHINYSDEKNCIGKLTAREN---------EYY 138
Query: 83 AFTRAWLLACRRVLKPNGTL--WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ R++K + + +V SY F + L + + +
Sbjct: 139 EAMEKVINEIFRIMKKDRYMALYVSDSYEKGFPFMPIGFKLFEIMSKYFMPIDIVSVIRH 198
Query: 141 RGRRFQNAHE 150
+ +
Sbjct: 199 NKTLNKGNYH 208
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 193 ERLRNKDGEKLHP-TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ L++++ + H P ++ +L TK D+++DP GSGT+ VA++L R +G
Sbjct: 19 QYLKSEEEKHKHYIGATPSYIIWNLLNRYTKEKDLVVDPMAGSGTTIDVARELGRRALGY 78
Query: 252 EMKQDYID 259
++ +
Sbjct: 79 DINPKALQ 86
>gi|268324659|emb|CBH38247.1| hypothetical protein BSM_17240 [uncultured archaeon]
Length = 436
Score = 44.7 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 8/140 (5%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEKLH--PTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
+ ++ + D K H P + ++ T P I+ DPF G G
Sbjct: 35 KNINWNFYQRSTLSPHEVHPFDCRKHHWFPATFVPEIPFTLIEVLTLPNAIVYDPFAGIG 94
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
T+ A L R I E+ + I+ P E+T + K + +
Sbjct: 95 TTYFQALLLNRKPITTEICRVSIEYMRSLFILFNP----EITFDSLKEDLKEMLKDFNQH 150
Query: 296 RGLIQPGQI--LTNAQGNIS 313
+ G L +
Sbjct: 151 KDYTPNGSENALIDKLRPWY 170
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 18/107 (16%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD-------- 73
I ++ E +P VDL+ PPY + + +
Sbjct: 272 TIFYEDARKY-ETIPDNFVDLVVTSPPYPNMTDYVTSQRLSYYFLGCDVTDKNRLIDPNL 330
Query: 74 ---------KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
+ S + Y + + +K G + N+
Sbjct: 331 EIGARSRRRRKDSIDRYLEDMQRANEVISQKIKSGGYACYVMPVFNV 377
>gi|147677050|ref|YP_001211265.1| hypothetical protein PTH_0715 [Pelotomaculum thermopropionicum SI]
gi|146273147|dbj|BAF58896.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 885
Score = 44.7 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPEALLSRIL 217
+ ++ D + P + +N H T+ P + R +
Sbjct: 63 CPNPFIRDFIKEHGKPYDPDNDAYRRQPFAADVSEGKNDPIYNAHSYHTKVPHRAIMRYI 122
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ T+PGDI+ D F G+G +G A
Sbjct: 123 LHYTEPGDIVFDGFCGTGMTGVAASLCG 150
Score = 43.5 bits (101), Expect = 0.050, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 32 LEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
L ++ + S D IF DPP+ N L ++ +AV + + Y
Sbjct: 488 LHQIKSSSTDYIFTDPPFGGNIMYSEMNFLWEAWLRVFTNNKPEAVENK-AQGKGPREYQ 546
Query: 83 AFTRAWLLACRRVLKPNGTLWVIG 106
C R+LKP + V+
Sbjct: 547 ELMEKCFAECYRILKPGRWMTVVF 570
>gi|116072527|ref|ZP_01469794.1| hypothetical protein BL107_12086 [Synechococcus sp. BL107]
gi|116065049|gb|EAU70808.1| hypothetical protein BL107_12086 [Synechococcus sp. BL107]
Length = 1003
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 32/113 (28%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDHSLVDAVTD 70
G+S+ L +VD + DPPY L+ L P+ +
Sbjct: 548 GDSLD---HLDDGTVDAVVMDPPYYDNVMYAELSDFFYVWLKRTAGLLYPELFMAPLTDK 604
Query: 71 SWDKFSSFE--------------AYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ ++ Y CRRVLK +G + ++ ++
Sbjct: 605 DNEAVANPALHKGKKGAKALAGLDYQQKMAEIFAECRRVLKDDGVMTLMFTHK 657
>gi|311068696|ref|YP_003973619.1| putative methyltransferase [Bacillus atrophaeus 1942]
gi|310869213|gb|ADP32688.1| putative methyltransferase [Bacillus atrophaeus 1942]
Length = 257
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
+ L++LP SVD+I+ DP
Sbjct: 160 HADCFDYLKQLPDDSVDVIYFDP 182
>gi|34451623|gb|AAQ72369.1| BseRI methylase fusion protein [Bacillus sp. R]
Length = 1309
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY---------NLQLNG 55
+ AI EN +S ++ G S + +P KSVD +F DPP+ N
Sbjct: 386 KAFAILENSDSNV----TVVNGTSTDL--DIPDKSVDYVFTDPPFGDYIPYAELNFLNEV 439
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
L + + + + S + S Y R LK +G V+
Sbjct: 440 WLGKTTN-RTNEIIISPKQEKSVTTYAELMAGVFKEISRTLKNDGAATVVF 489
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+PT+ ++ + S TKPGD++LD F GSGT+G A
Sbjct: 43 YPTKISPESIAVFIASHTKPGDVVLDTFGGSGTTGIAAHLC 83
>gi|197336311|ref|YP_002156084.1| methyltransferase [Vibrio fischeri MJ11]
gi|229560196|sp|B5FE19|RLML_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|197317801|gb|ACH67248.1| methyltransferase [Vibrio fischeri MJ11]
Length = 705
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 22/140 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N N + + ++ + + L++ DLIF DPP R + +
Sbjct: 581 NMNTNGQTGTQHQFLQADCLQWLQQ-ADGEFDLIFIDPP----TFSNSKRMEQT------ 629
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F + L +R+L+ NGT+ + N L+ +
Sbjct: 630 -----FDVQRDHIML----LENLKRMLRENGTIVFSNNKRNFKMDDAALEKAG--LKAKN 678
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
+ +++ P+ R + N
Sbjct: 679 ISKQTLPLDFARNKHIHNCW 698
>gi|42525745|ref|NP_970843.1| adenine-specific DNA modification methyltransferase [Treponema
denticola ATCC 35405]
gi|41815756|gb|AAS10724.1| adenine-specific DNA modification methyltransferase [Treponema
denticola ATCC 35405]
Length = 877
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 9/224 (4%)
Query: 50 NLQLNGQLYRPDHSLVDAVTDSWDKFSSF--EAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
N L G D ++ + ++S+D E Y L+ R LKPNG + +
Sbjct: 379 NKNLKGISKLLDKTINNLKSNSYDNRIPVMAEHYFYDMYKTFLSIREYLKPNGKIAIDIG 438
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
+ + IL + ++ + + R I + +K
Sbjct: 439 DSIFGGVHIPTDLILIEILLTLEYKLIDSVKLRERRSRSGETIKQILLIFTNNSKQDIKK 498
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP------TQKPEALLSRILVSST 221
+ + + + + G KLH KP ++ ++ +
Sbjct: 499 KEDVYVPKWEEKWSFFKNNIPYQKIPYSKKNWGNKLHSLCSYQGKLKP-SIAHFLVNTFV 557
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
ILDPF G GT A+ + ++ I+ ++
Sbjct: 558 PENGSILDPFSGVGTIPFEARLNNKYSFSFDISLPAYYISAAKL 601
>gi|283956745|ref|ZP_06374221.1| hypothetical protein C1336_000290020 [Campylobacter jejuni subsp.
jejuni 1336]
gi|283791720|gb|EFC30513.1| hypothetical protein C1336_000290020 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 337
Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN--LQLNGQLYRPDHSLVDAVTDS 71
N + + K+ + I +L+K+ VDLI+ DPPY + Y P + T
Sbjct: 197 NGLKNFSHKL---DCIKMLDKIA--KVDLIYIDPPYPSTMNNYFNFYGPYDKIFKEETKQ 251
Query: 72 WDKFSSFEAYDAFTRAWLLAC 92
F++ + +
Sbjct: 252 CTDFTNKNTFLQNLKLIFEKA 272
>gi|217969387|ref|YP_002354621.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
gi|217506714|gb|ACK53725.1| DNA methylase N-4/N-6 domain protein [Thauera sp. MZ1T]
Length = 1039
Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 40/139 (28%), Gaps = 21/139 (15%)
Query: 23 IIKGNSISVLEKLPA----KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
+I G++ L L S+D + DPPYN ++ SW S
Sbjct: 469 VINGDNFQALN-LAKYRYRASIDFTYIDPPYNT-----VHSKIAYKNQFEHSSWLALISN 522
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
FTR + I Y + D+ N P
Sbjct: 523 T--LPFTRDLFGEIYSF------GFAIDDYE---YNNAFHCLRGHFTECDVSTIVINHHP 571
Query: 139 NFRGRRFQNAHETLIWASP 157
G R HE I ASP
Sbjct: 572 QGSGGRLSRTHEYYIVASP 590
>gi|197303930|ref|ZP_03168962.1| hypothetical protein RUMLAC_02667 [Ruminococcus lactaris ATCC
29176]
gi|197296898|gb|EDY31466.1| hypothetical protein RUMLAC_02667 [Ruminococcus lactaris ATCC
29176]
Length = 176
Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 34/139 (24%), Gaps = 23/139 (16%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
L + +S+DLI PPY + P D +
Sbjct: 48 LSFIKDESIDLICTHPPYADIIRYSKEIPGDISHLKYED----------FLKELEKVAKE 97
Query: 92 CRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWI------------LNDIVWRKSNPMP 138
RVLK G ++IG + + N + +
Sbjct: 98 SYRVLKKQGICTFMIGDIRKKGYVLPLGMNSMQKFVDAGFKLKEIIIKEQHNCKTTEYWD 157
Query: 139 NFRGRRFQNAHETLIWASP 157
N AHE +
Sbjct: 158 NIEKTFLMLAHEYIFVLEK 176
>gi|308182750|ref|YP_003926877.1| modification methylase MjaII [Helicobacter pylori PeCan4]
gi|308064935|gb|ADO06827.1| modification methylase MjaII [Helicobacter pylori PeCan4]
Length = 522
Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 17/186 (9%)
Query: 148 AHETLIWASPSPKAKGYTFNYDALKA---ANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ + + +PK N +E ++ ++ ++ +
Sbjct: 38 NYGKIANYAKNPKENLINKNELKAYYDTILSEKEELAHPLSFSQFKEAQTTKHIHRLHPY 97
Query: 205 PTQKPEALLSRILVSST---------KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ L+ L S T K GDI+LD F GSGT+ AVA +L + +G+E+
Sbjct: 98 KGKFIPQLVEYFLDSHTDTLKEQVFFKKGDIVLDLFCGSGTTLAVANELGLNAVGLELSI 157
Query: 256 DYIDIATKRIASV-----QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
+ +I S + + + VL T+ +A V +
Sbjct: 158 FNTMLCNAKIKSYDLKALKNELSRLIGVLENFSTQNNIAEFEQVLSQKLSKFNQTHFPNK 217
Query: 311 NISATV 316
V
Sbjct: 218 EFKRKV 223
>gi|37525699|ref|NP_929043.1| 23S rRNA m(2)G2445 methyltransferase [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|81834008|sp|Q7N612|RLML_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|36785128|emb|CAE14057.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 705
Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + ++I+ + ++ L + + DLIF DPP D
Sbjct: 583 NELTGRQHRLIQADCLAWLAR-ANEQFDLIFIDPP---------------TFSNSKRMED 626
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
F + +R+L+ GTL +
Sbjct: 627 TFDVQRDHIMLM----RQLKRLLRRGGTLMFSNNKR 658
>gi|283784768|ref|YP_003364633.1| RNA methylase [Citrobacter rodentium ICC168]
gi|282948222|emb|CBG87789.1| putative RNA methylase [Citrobacter rodentium ICC168]
Length = 702
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + + L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ + +R+L+ GT+ +
Sbjct: 635 HLRLMQD----LKRLLRQGGTIMFSNNKR 659
>gi|298206673|ref|YP_003714852.1| adenine-specific DNA modification methyltransferase [Croceibacter
atlanticus HTCC2559]
gi|83849304|gb|EAP87172.1| adenine-specific DNA modification methyltransferase [Croceibacter
atlanticus HTCC2559]
Length = 374
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 196 RNKDGEKLHP------TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
+ G K H KP A+ ++ + + GD + D F GSGT A R
Sbjct: 23 KRNWGNKQHSLCSFYGKLKP-AISHHLVDTFSSEGDNVFDCFTGSGTIPFEASLNNRKSY 81
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIELTVL 279
+++ I + T +I + G ++
Sbjct: 82 ALDINPISITLTTAKIQNQSKEGCTKIFDE 111
>gi|1074267|pir||B64143 hypothetical protein HI0115 - Haemophilus influenzae (strain Rd
KW20)
Length = 545
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIFADPP S + +SWD
Sbjct: 427 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFADPP------------TFSNSKRMEESWD 473
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 474 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELGLSAIE--ISHK 524
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 525 TLPLDFERNKQIHNCW 540
>gi|295695068|ref|YP_003588306.1| DNA methylase N-4/N-6 domain protein [Bacillus tusciae DSM 2912]
gi|295410670|gb|ADG05162.1| DNA methylase N-4/N-6 domain protein [Bacillus tusciae DSM 2912]
Length = 938
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 35 LPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
+ + S+D IF DPP+ L L ++ +AV + + Y
Sbjct: 505 IKSHSIDYIFTDPPFGANLMYSELNFLWEAWLKVFTNNRTEAVVNQT-QGKGLVEYQRLM 563
Query: 86 RAWLLACRRVLKPNGTLWVIGS 107
A RVLKP + V S
Sbjct: 564 EACFKEYYRVLKPGRWMTVEFS 585
Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP--TQKPE 210
+ + P + + E P + +N H T+ P
Sbjct: 70 PYYTVCPNPFLPEILKEWEEMKEEPDAEEPYRREPFAADVSEGKNDPIYNAHSYHTKVPH 129
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
+ R ++ T+PGDI+ D F G+G +G A+
Sbjct: 130 KAIMRYILHYTRPGDIVFDGFAGTGMTGVAAQLCG 164
>gi|237739340|ref|ZP_04569821.1| sensor protein fixL [Fusobacterium sp. 2_1_31]
gi|229422948|gb|EEO37995.1| sensor protein fixL [Fusobacterium sp. 2_1_31]
Length = 247
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
S ER + + +++ T+ D+ILD F G GT+ AK L R+
Sbjct: 21 WSFKERGDWATHDAKWRGNWSPYIPRNLILRYTQEKDLILDQFAGGGTTLVEAKLLNRNI 80
Query: 249 IGIEMKQDYIDIATKRIASV 268
IGI++ I+ ++I
Sbjct: 81 IGIDVNDIAIERCREKIDFE 100
>gi|222481228|ref|YP_002567464.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
49239]
gi|222454604|gb|ACM58867.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
49239]
Length = 878
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PEAL L +LDPF G GT+ A ++ + IG ++ K I SV
Sbjct: 85 PEALWDYYLEDVDFGDKTVLDPFMGGGTTIVEALRMGCNVIGSDLNPVAWFTVKKEIESV 144
Query: 269 QPLGNIE 275
E
Sbjct: 145 DIDDLQE 151
Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 28/153 (18%)
Query: 35 LPAKSVDLIFADPPYN-------------------LQLNGQLYRPDHS------LVDAVT 69
+ KSVD I DPPY L ++ + + +VD
Sbjct: 500 IEDKSVDAIITDPPYYDNEMYAELSDFYYVWLHEVLSDTYDHFQGERTPKKSEAVVDPAK 559
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN--LNFWILN 127
D DK + E Y RR L +G + + G+ LQ+ + ++
Sbjct: 560 DVEDK-RTEEHYIETLTNVFNESRRKLADDGIMAFTFHHKETEAWGSTLQSVLDADFYIS 618
Query: 128 DIVWRKSNPMPNFRGRRFQNAHETLIWASPSPK 160
+ S R R ++T+I +
Sbjct: 619 ALYPVNSETRGGTRHGRATVDYDTIIVCRKRQE 651
>gi|170683350|ref|YP_001744221.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SMS-3-5]
gi|238688762|sp|B1LJR4|RLML_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|170521068|gb|ACB19246.1| putative RNA methylase family UPF0020 [Escherichia coli SMS-3-5]
Length = 702
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+ GT+ +
Sbjct: 635 HLVLM----KDLKRLLRAGGTIMFSNNKR 659
>gi|218700533|ref|YP_002408162.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli IAI39]
gi|218370519|emb|CAR18326.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli IAI39]
Length = 702
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+ GT+ +
Sbjct: 635 HLVLM----KDLKRLLRAGGTIMFSNNKR 659
>gi|257459310|ref|ZP_05624424.1| DNA methylase [Campylobacter gracilis RM3268]
gi|257443323|gb|EEV18452.1| DNA methylase [Campylobacter gracilis RM3268]
Length = 225
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 57/199 (28%), Gaps = 27/199 (13%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL G + L D+ + F
Sbjct: 18 KAQLVIADIPYNLGNNAYASNPVWYVGGDNANGESKLAGKSFFDTDENFKVAEFMHFCSK 77
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ + + V ++ + + F ++V+RK + +
Sbjct: 78 MLIKEPKEAGRAPAMIVFCAFEQQAPLIELAARYGFAHYINLVFRKKSSSQVLKANMR-- 135
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ 207
F D L N +MR + + + K+HPTQ
Sbjct: 136 --------IVGNCEYALIFYRDKLPKFNGGGRMRMNCI------DWVSDDASVPKIHPTQ 181
Query: 208 KPEALLSRILVSSTKPGDI 226
KP LL ++ T G
Sbjct: 182 KPVKLLEYLISLFTDVGGC 200
>gi|227485749|ref|ZP_03916065.1| DNA methylase [Anaerococcus lactolyticus ATCC 51172]
gi|227236304|gb|EEI86319.1| DNA methylase [Anaerococcus lactolyticus ATCC 51172]
Length = 248
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILD 229
++ + G+ + P I++ ++ GD++LD
Sbjct: 5 KKWEPDDFELEMTTHWSFPQRGNWATHDAKWRGNWSPYIP----RNIILRYSEEGDLVLD 60
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
F G GT+ AK L R+ IG+++ D+A R + + K
Sbjct: 61 QFAGGGTTLVEAKLLNRNIIGLDVN----DVALNRCKEKIDFNLTDRPLGKVK 109
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K++KG++ + L+ L +S+DL+ PPY + + + + D +
Sbjct: 109 KLLKGDARN-LDFLTDESIDLVCTHPPYADIIKYSDGIENDLSLLKIND----------F 157
Query: 82 DAFTRAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTM 117
RVLK + ++G + +
Sbjct: 158 LKEMNKVAAEAYRVLKKDKFCAILMGDTRKNKHMIHL 194
>gi|110641137|ref|YP_668867.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 536]
gi|191172055|ref|ZP_03033599.1| putative RNA methylase family UPF0020 [Escherichia coli F11]
gi|300983000|ref|ZP_07176404.1| THUMP domain protein [Escherichia coli MS 200-1]
gi|122958441|sp|Q0TJB3|RLML_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|110342729|gb|ABG68966.1| hypothetical protein YcbY [Escherichia coli 536]
gi|190907582|gb|EDV67177.1| putative RNA methylase family UPF0020 [Escherichia coli F11]
gi|300307017|gb|EFJ61537.1| THUMP domain protein [Escherichia coli MS 200-1]
gi|324009878|gb|EGB79097.1| THUMP domain protein [Escherichia coli MS 57-2]
gi|324012930|gb|EGB82149.1| THUMP domain protein [Escherichia coli MS 60-1]
Length = 702
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+ GT+ +
Sbjct: 635 HLVLM----KDLKRLLRAGGTIMFSNNKR 659
>gi|196044173|ref|ZP_03111409.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
VrlL [Bacillus cereus 03BB108]
gi|196024812|gb|EDX63483.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
VrlL [Bacillus cereus 03BB108]
Length = 931
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 35 LPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
+ S+D IF DPP+ +N L ++ +A+ ++ + Y
Sbjct: 498 IADNSIDYIFTDPPFGANINYSELNFIWESWLKVVTNNNSEAIINAT-QEKGITQYQDLM 556
Query: 86 RAWLLACRRVLKPNGTLWVIGS 107
RVLKP + V S
Sbjct: 557 EDSFKNYYRVLKPGRWMTVEFS 578
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 148 AHETLIWASPSPKAKGYTFNYDALKAANEDVQ-MRSDWLIPICSGSERLRNKDGEKLHP- 205
+ A P+P + ++ K P S +N H
Sbjct: 68 SDPPYYTACPNPWINEFIREWEREKVEKYGRDANEEYHKEPFASDVSEGKNDPIYNAHSY 127
Query: 206 -TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
T+ P + + L+ T+PGD+ILD F G+G +G A +
Sbjct: 128 HTKVPYKAIIKFLLHYTEPGDVILDAFCGTGMTGVAAARC 167
>gi|329942454|ref|ZP_08291264.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
gi|332287094|ref|YP_004421995.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
gi|313847690|emb|CBY16678.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|325507367|gb|ADZ19005.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
gi|328815364|gb|EGF85352.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
gi|328914329|gb|AEB55162.1| Methylase [Chlamydophila psittaci 6BC]
Length = 187
Score = 44.3 bits (103), Expect = 0.034, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 22 KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
IIK + S +++L K S DLI+ DPPYNL+ + +V + D
Sbjct: 94 TIIKQEARSAIQRLAKKHMSFDLIYIDPPYNLEDSYIAAVLRDIVVGGILDK 145
>gi|170717749|ref|YP_001784818.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus somnus 2336]
gi|229560187|sp|B0UUM5|RLML_HAES2 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|168825878|gb|ACA31249.1| putative RNA methylase [Haemophilus somnus 2336]
Length = 718
Score = 44.3 bits (103), Expect = 0.034, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + L K + DLIF DPP S + DSWD
Sbjct: 599 NDIEGKQHKLIQADCLQWLNKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 645
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+ NGT+ +
Sbjct: 646 VQRDH-------IKLMANLKRILRTNGTIVFSNNKR 674
>gi|113461163|ref|YP_719232.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus somnus 129PT]
gi|123327369|sp|Q0I4C6|RLML_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|112823206|gb|ABI25295.1| 23S rRNA m(2)G-2445 methyltransferase [Haemophilus somnus 129PT]
Length = 718
Score = 44.3 bits (103), Expect = 0.034, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + L K + DLIF DPP S + DSWD
Sbjct: 599 NDIEGKQHKLIQADCLQWLNKC-DRQFDLIFVDPP------------TFSNSKRMEDSWD 645
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+ NGT+ +
Sbjct: 646 VQRDH-------IKLMANLKRILRTNGTIVFSNNKR 674
>gi|312136740|ref|YP_004004077.1| RNA methylase [Methanothermus fervidus DSM 2088]
gi|311224459|gb|ADP77315.1| putative RNA methylase [Methanothermus fervidus DSM 2088]
Length = 343
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 7/130 (5%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQK--PEAL---LSRIL-- 217
N + ++ V S I G ++ + K H P +L ++R +
Sbjct: 122 KVNLENPESFVRVVFNDSKVFFGIRIGKINKKHFNIAKPHKRPFFHPSSLDPKIARCMVN 181
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
++ K G+ ILDPF G+G A + IG ++ + + A + +
Sbjct: 182 LARVKKGEKILDPFCGAGGVLIEAGMIGIKVIGCDIDKKMVKGAIENLKYFGIKDFKVFQ 241
Query: 278 VLTGKRTEPR 287
K
Sbjct: 242 EDARKIKLKE 251
Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 24/83 (28%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K+ + ++ + KL + VD I DPPY + + + E
Sbjct: 238 KVFQEDARKI--KL-KEKVDAIVTDPPYGISTSTKG---------------------EEL 273
Query: 82 DAFTRAWLLACRRVLKPNGTLWV 104
+LL+ + LK NG L +
Sbjct: 274 SKLYYEFLLSAKDNLKDNGILCM 296
>gi|293414228|ref|ZP_06656877.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
B185]
gi|291434286|gb|EFF07259.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
B185]
Length = 702
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQCD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|187931616|ref|YP_001891600.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|229560157|sp|B2SGG3|RLML_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|187712525|gb|ACD30822.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 717
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NNINAKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|317047590|ref|YP_004115238.1| rRNA (guanine-N(2)-)-methyltransferase [Pantoea sp. At-9b]
gi|316949207|gb|ADU68682.1| rRNA (guanine-N(2)-)-methyltransferase [Pantoea sp. At-9b]
Length = 716
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + +S L + + DLIF DPP D F
Sbjct: 602 HRLMQADCLSWLRE-SNEQFDLIFIDPP---------------TFSNSKRMEDDFDVQRD 645
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ + +R+L+ GT+ + LQ L + + +K+
Sbjct: 646 HLMLMQN----LKRLLRRGGTIMFSNNKRGFKMDLDGLQRLG--LQAQEITQKTQSQDFA 699
Query: 141 RGRRFQNAH 149
R N
Sbjct: 700 RNHHIHNCW 708
>gi|332286876|ref|YP_004418787.1| hypothetical protein PT7_3623 [Pusillimonas sp. T7-7]
gi|330430829|gb|AEC22163.1| hypothetical protein PT7_3623 [Pusillimonas sp. T7-7]
Length = 199
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+I G++ L+++ S DLI DPP+
Sbjct: 102 RIHAGDAQEALKRMTENSFDLIMLDPPFG 130
>gi|148658099|ref|YP_001278304.1| hypothetical protein RoseRS_4009 [Roseiflexus sp. RS-1]
gi|148570209|gb|ABQ92354.1| hypothetical protein RoseRS_4009 [Roseiflexus sp. RS-1]
Length = 512
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
K+I +S V LP S+D++ PPY
Sbjct: 256 KVINDDSRQVRHILPDSSIDIVITSPPY 283
Score = 39.6 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 28/93 (30%)
Query: 176 EDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSG 235
EDV + D R L R L +LDPF G G
Sbjct: 12 EDVVIFRDPAFEQNKRHAIHRWVPWIAGFSADFVVDALRRYLPDGAGRNTCVLDPFAGVG 71
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
T+ + + + IG E+ A + +
Sbjct: 72 TTLVESIRHGHNAIGFEINPFAALAARVKCTAF 104
>gi|259908891|ref|YP_002649247.1| 23S rRNA m(2)G2445 methyltransferase [Erwinia pyrifoliae Ep1/96]
gi|224964513|emb|CAX56023.1| Putative RNA methylase [Erwinia pyrifoliae Ep1/96]
Length = 705
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++++ + +S L + DLIF DPP
Sbjct: 580 NMRLNGLSGRQHRLMQADCLSWLRD-ADEQFDLIFIDPP---------------TFSNSK 623
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + +R+L+ NGT+ +
Sbjct: 624 RMEESFDVQRDHLELM----KDLKRLLRKNGTVMFSNNKR 659
>gi|307719841|ref|YP_003875373.1| hypothetical protein STHERM_c21710 [Spirochaeta thermophila DSM
6192]
gi|306533566|gb|ADN03100.1| hypothetical protein STHERM_c21710 [Spirochaeta thermophila DSM
6192]
Length = 353
Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ G++ + P +S I DPP+ ++L +L D D FS+F
Sbjct: 252 RLVLGDARRLSSYFPPESFQYIVTDPPFGVKLGRRL------------DFEDLFSAF--- 296
Query: 82 DAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRI 114
L VLKP GT+ ++ + I R+
Sbjct: 297 -------LEEASLVLKPGGTMVFLTMHWRIISRL 323
>gi|257868440|ref|ZP_05648093.1| predicted protein [Enterococcus gallinarum EG2]
gi|257802604|gb|EEV31426.1| predicted protein [Enterococcus gallinarum EG2]
Length = 216
Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 149 HETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNK-----DGEKL 203
HE ++ S SPK + + + + ++ R + E +
Sbjct: 45 HEYILCYSKSPKYNVNYKFSTWIDTISTNSEREDEFYELESMYQNEARKYINDLFNKEVV 104
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
KP LL + + GD ILD F GSGT+G KL
Sbjct: 105 TNYPKPVTLLEEVFSIFLRDGDKILDIFGGSGTTGEACMKLN 146
>gi|313889261|ref|ZP_07822915.1| methyltransferase domain protein [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312844815|gb|EFR32222.1| methyltransferase domain protein [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 248
Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
+ I++ + D+ILD F G GT+ AK L R+ GI++ D+A R
Sbjct: 44 IPRNIILRYSNEKDLILDQFAGGGTTLVEAKLLNRNIFGIDVN----DVALNRCKEK 96
Score = 43.5 bits (101), Expect = 0.051, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 19/131 (14%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
KG++ + L+ +P S+DLI PPY N+ + D S + + + A
Sbjct: 112 KGDARN-LDFIPDNSIDLICTHPPYANIIEYSEDIEEDLSRLK-----------IKDFLA 159
Query: 84 FTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNF-----WILNDIVWRKSNPM 137
+ RVLK + V IG + + + + K
Sbjct: 160 EMKKVAAESYRVLKKDKFCAVLIGDTRQKGHMIPLSFYVMQIFEEAGFKMKEMIIKEQHN 219
Query: 138 PNFRGRRFQNA 148
G N+
Sbjct: 220 CKATGFWKTNS 230
>gi|218438804|ref|YP_002377133.1| hypothetical protein PCC7424_1833 [Cyanothece sp. PCC 7424]
gi|218171532|gb|ACK70265.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
Length = 444
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT------KRIASVQPL 271
+++ ILDPF G+GT+ VAKK+ + +GIE +A + ++
Sbjct: 57 LNNFNEKSYILDPFVGTGTTNIVAKKMGINSVGIEAHPFVYWVANIKCFWEYNLKELKNK 116
Query: 272 GNIELTVLTGKRTEP 286
++ L R P
Sbjct: 117 IQSLISQLENIRPYP 131
>gi|146295007|ref|YP_001185431.1| putative DNA modification methylase [Shewanella putrefaciens CN-32]
gi|145566697|gb|ABP77632.1| putative DNA modification methylase [Shewanella putrefaciens CN-32]
Length = 345
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
R L K +I+DPF G GTS A+KL GI+ IA ++AS +
Sbjct: 2 RHLAKFKKEDPVIIDPFCGRGTSMFAARKLGLKAWGIDSSPVATAIARAKLASCSKEDIL 61
Query: 275 EL 276
+L
Sbjct: 62 DL 63
>gi|283478884|emb|CAY74800.1| UPF0020/UPF0064 protein ycbY [Erwinia pyrifoliae DSM 12163]
Length = 717
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++++ + +S L + DLIF DPP
Sbjct: 592 NMRLNGLSGRQHRLMQADCLSWLRD-ADEQFDLIFIDPP---------------TFSNSK 635
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + +R+L+ NGT+ +
Sbjct: 636 RMEESFDVQRDHLELM----KDLKRLLRKNGTVMFSNNKR 671
>gi|209554388|ref|YP_002284918.1| DNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|209541889|gb|ACI60118.1| DNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
Length = 360
Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMK 254
KP L+ +L + +LD F GSGT+G + R+F I
Sbjct: 199 NIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVLELNKEDGGNRTFTLITNN 258
Query: 255 QDYI--DIATKRIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
++ I ++ +R+ + E + +P + + + I +
Sbjct: 259 ENQIGTNVCYERLYRINNGVGTKNEADFDWINKNKPYLNNLNVYDLKYFNTNPIEIDNNE 318
Query: 311 NISA 314
A
Sbjct: 319 IKEA 322
Score = 39.6 bits (91), Expect = 0.77, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 8/154 (5%)
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
L + +LK +G ++V + + ++ + + +
Sbjct: 1 MMNERLKLAKNLLKNDGVIFVSIDDNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNK 60
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRSDWLIPICSGSERLRNKDGE 201
HE ++ S + + + +D S ++ + + KD +
Sbjct: 61 LIYEGHEYILCYSKNNYNFCLSEKNKKMSGFIKYKDKNNNSFFINSDIIRNNFGK-KDNK 119
Query: 202 KLHPTQKPEALL----SRILVSSTKPGDIILDPF 231
H + E L + + IL PF
Sbjct: 120 FEHRNKAYEDLSKEDKEKWNLKLDNKN-YILVPF 152
>gi|310767209|gb|ADP12159.1| UPF0020/UPF0064 protein ycbY [Erwinia sp. Ejp617]
Length = 717
Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++++ + +S L + DLIF DPP
Sbjct: 592 NMRLNGLSGRQHRLMQADCLSWLRD-ADEQFDLIFIDPP---------------TFSNSK 635
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + +R+L+ NGT+ +
Sbjct: 636 RMEESFDVQRDHLELM----KDLKRLLRKNGTVMFSNNKR 671
>gi|149922447|ref|ZP_01910880.1| putative RNA methylase [Plesiocystis pacifica SIR-1]
gi|149816727|gb|EDM76218.1| putative RNA methylase [Plesiocystis pacifica SIR-1]
Length = 465
Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G +P + AL +L PG +LDPF G GT A +G ++
Sbjct: 89 HGFHTYPARMHPALARVVLREFDLGPGSEVLDPFCGGGTVAVEAMVAGWRCLGSDLDPLA 148
Query: 258 IDIATKRIASVQPLGN 273
+ ++ ++ +
Sbjct: 149 LRLSRVKVERRREPQR 164
>gi|190573824|ref|YP_001971669.1| putative modification methylase [Stenotrophomonas maltophilia
K279a]
gi|190011746|emb|CAQ45366.1| putative modification methylase [Stenotrophomonas maltophilia
K279a]
Length = 474
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 34/110 (30%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G P + + + + ++ DPF GSGT+ A + G ++
Sbjct: 68 HGLHRFPAKYIPQVPQWAIRNFAGEDSVVWDPFMGSGTTLVEALCAVKQSYGTDIDPLAR 127
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNA 308
I+ + + P L+ P V L G+ +
Sbjct: 128 LISGAKTTPLSPSRLAALSEKLSSSCLPSVDDCFLPMAGVKNVTHWFPDK 177
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
I++GN++SV L SVDLI PPY
Sbjct: 264 TILEGNALSV--PLKDASVDLIVTSPPY 289
>gi|148825609|ref|YP_001290362.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
PittEE]
gi|229560165|sp|A5UB28|RLML_HAEIE RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|148715769|gb|ABQ97979.1| possible SAM-dependent methyltransferase [Haemophilus influenzae
PittEE]
Length = 711
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELGLSAIE--ISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|62261639|gb|AAX78004.1| unknown protein [synthetic construct]
Length = 752
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 20/138 (14%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I K I+ + IS L+ D+IF DPP S + D D
Sbjct: 627 NNIDAKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 673
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N ++ I +
Sbjct: 674 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKICLSR 726
Query: 134 SNPMPNFRGRRFQNAHET 151
++ ++
Sbjct: 727 DFLSNKNIHNCWEIKYKY 744
>gi|301168774|emb|CBW28365.1| predicted methyltransferase [Haemophilus influenzae 10810]
Length = 711
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLISNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|166365955|ref|YP_001658228.1| hypothetical protein MAE_32140 [Microcystis aeruginosa NIES-843]
gi|166088328|dbj|BAG03036.1| unknown protein [Microcystis aeruginosa NIES-843]
Length = 770
Score = 43.9 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNG-----------QLYRPDHSLVDAVTDSWDKFSSFEA 80
L + ++SVD I+ DPPY + D++ + D S E
Sbjct: 263 LTGISSESVDYIYTDPPYGQHIAYLDLSTMWNAWLGFEVSDNARELEAIEGGDLKKSKET 322
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
Y + RVLK + + ++ ++ + +
Sbjct: 323 YINLLSNSIREMFRVLKFDRWMSIVFAHKDPAYWDAI 359
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY------IDIATKRIASVQP 270
+ ++ GD++LDPF GSG + A L+R I ++ I ++ I +
Sbjct: 38 IKRFSQVGDVVLDPFGGSGVTAVEALVLKRKAIYSDINPMAGFICRNIAVSPVNIDDFRS 97
Query: 271 LGNIELTVLTGKRTEPR 287
+ K E
Sbjct: 98 AFDDIARNCQEKIEEVY 114
>gi|307137579|ref|ZP_07496935.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli H736]
Length = 407
Score = 43.9 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 296 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 339
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 340 HLALM----KDLKRLLRAGGTIMFSNNKR 364
>gi|309972755|gb|ADO95956.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Haemophilus
influenzae R2846]
Length = 711
Score = 43.9 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELGLSAIE--ISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|323165428|gb|EFZ51215.1| hypothetical protein SS53G_4112 [Shigella sonnei 53G]
Length = 702
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HMALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|296125875|ref|YP_003633127.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
12563]
gi|296017691|gb|ADG70928.1| DNA methylase N-4/N-6 domain protein [Brachyspira murdochii DSM
12563]
Length = 246
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 193 ERLRNKDGEKLHP-TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+ L++++ + H P ++ +L TK D+++DP GSGT+ VA++L R +G
Sbjct: 19 QYLKSEEEKHKHYIGATPSYIIWNLLNRYTKEKDLVVDPMAGSGTTIDVARELNRRALGY 78
Query: 252 EMKQDYID 259
++ +
Sbjct: 79 DINPKALQ 86
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 13/130 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I K ++ + + + D +F DPPY+ +N + + A + Y
Sbjct: 90 IFKADARKI--PIEDEKADFVFIDPPYSTHINYSDEKNCIGKLTAKEN---------EYY 138
Query: 83 AFTRAWLLACRRVLKPNGTL--WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ R+++ + + +V SY F + L + + +
Sbjct: 139 EAMEKVISEIFRIMRKDRYMALYVSDSYEKGFPFMPIGFKLFEIMSKYFMPIDIVSVVRH 198
Query: 141 RGRRFQNAHE 150
+ +
Sbjct: 199 NKTLNKGNYH 208
>gi|307151064|ref|YP_003886448.1| methyltransferase [Cyanothece sp. PCC 7822]
gi|306981292|gb|ADN13173.1| methyltransferase [Cyanothece sp. PCC 7822]
Length = 179
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
NS E+ +II+G+ +S L L K D I+ DPPYN L
Sbjct: 85 NSAQEF--QIIRGDVVSKLSTLSEKKFDRIYFDPPYNSGL 122
>gi|294635636|ref|ZP_06714112.1| putative methylase [Edwardsiella tarda ATCC 23685]
gi|291091019|gb|EFE23580.1| putative methylase [Edwardsiella tarda ATCC 23685]
Length = 705
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + ++ L DLIF DPP R + + D D D +
Sbjct: 590 HRLVQADCLAYLRHCED-KFDLIFIDPP----TFSNSKRMEGT-FDVQRDHLDLMADLA- 642
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
R+L+P G + + + L + + ++
Sbjct: 643 -------------RILRPGGAIMFSNNKRGFKMDQAGMTRLG--LQAQEITERTLSADFV 687
Query: 141 RGRRFQNAH 149
R R+ N
Sbjct: 688 RNRQIHNCW 696
>gi|126661447|ref|ZP_01732504.1| hypothetical protein CY0110_31960 [Cyanothece sp. CCY0110]
gi|126617260|gb|EAZ88072.1| hypothetical protein CY0110_31960 [Cyanothece sp. CCY0110]
Length = 547
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 36/213 (16%), Positives = 62/213 (29%), Gaps = 45/213 (21%)
Query: 2 SQKNSLAI--NENQNSIFEWKDKIIKG----------NSISVLEKLPAKSVDLIFADPPY 49
SQ N L I N+ N E ++K+ S L +P ++D I DPPY
Sbjct: 96 SQNNDLTITHNKQNNKDVEIENKLHNNYAPEIVNINLESADSLYHIPDNTLDAIITDPPY 155
Query: 50 NLQLNG-------------------------QLYRPDHSLVDAVTDSWDKFSSFE----- 79
+ +L D V + + S +
Sbjct: 156 YGTIQYAELSDFFYVWQRRTLGDIFPDLFYQELTDKDREAVANPSRFRNMGESPDILAKR 215
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI---FRIGTMLQNLNFWILNDIVWRKSNP 136
Y+A RVL+ G L V ++ + + L + F I NP
Sbjct: 216 DYEAKMALAWSEAYRVLRDEGVLTVQFNHKDSGAWDTLAKALIDAGFEITASWAVSTENP 275
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
+ ++ + ++ + D
Sbjct: 276 QNLHQAKKNSVSSTVILVCRKRDPKAQQAWWDD 308
>gi|74311505|ref|YP_309924.1| 23S rRNA m(2)G2445 methyltransferase [Shigella sonnei Ss046]
gi|123617569|sp|Q3Z3H3|RLML_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|73854982|gb|AAZ87689.1| putative oxidoreductase [Shigella sonnei Ss046]
Length = 702
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HMALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|62184779|ref|YP_219564.1| hypothetical protein CAB134 [Chlamydophila abortus S26/3]
gi|62147846|emb|CAH63592.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
Length = 187
Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 22 KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
IIK + S +++L K S DLI+ DPPYNL+ + +V + D
Sbjct: 94 TIIKQEARSAIQRLAKKNMSFDLIYIDPPYNLEDSYLAAVLRDIVVGGILDK 145
>gi|229847239|ref|ZP_04467342.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
7P49H1]
gi|229809782|gb|EEP45505.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
7P49H1]
Length = 711
Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|329123876|ref|ZP_08252431.1| N6-adenine-specific DNA methytransferase [Haemophilus aegyptius
ATCC 11116]
gi|327468717|gb|EGF14195.1| N6-adenine-specific DNA methytransferase [Haemophilus aegyptius
ATCC 11116]
Length = 711
Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIKGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|237730904|ref|ZP_04561385.1| 23S rRNA m(2) methyltransferase [Citrobacter sp. 30_2]
gi|226906443|gb|EEH92361.1| 23S rRNA m(2) methyltransferase [Citrobacter sp. 30_2]
Length = 702
Score = 43.9 bits (102), Expect = 0.045, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + + L + DLIF DPP D F
Sbjct: 591 HRLIQADCLGWLRD-ANEQFDLIFIDPP---------------TFSNSKRMEDSFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ +GT+ +
Sbjct: 635 HLALM----KDLKRLLRKDGTIMFSNNKR 659
>gi|167044429|gb|ABZ09105.1| hypothetical protein ALOHA_HF4000APKG6D9ctg2g10 [uncultured marine
crenarchaeote HF4000_APKG6D9]
Length = 415
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 4/144 (2%)
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRIL- 217
+ YTF+ + + D+ + R + + L+ +L
Sbjct: 3 FNKEAYTFSKKQFGHLTNKISYKPDFSSLVTFSPNRKLPRHRWFYYKESFSADLVKFLLT 62
Query: 218 VSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE- 275
T D ILDPF G GT+ +K L + IGI++ I ++A+ E
Sbjct: 63 KLKTNSNEDYILDPFCGVGTTSLTSKILGYNHIGIDILPLCTFITNTKLANYNTKKIEEI 122
Query: 276 -LTVLTGKRTEPRVAFNLLVERGL 298
L + +++P+ + +++
Sbjct: 123 LLGIRGKPKSKPKKFGSYYIDKSF 146
>gi|145636405|ref|ZP_01792073.1| predicted methyltransferase [Haemophilus influenzae PittHH]
gi|145270230|gb|EDK10165.1| predicted methyltransferase [Haemophilus influenzae PittHH]
Length = 711
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|145639994|ref|ZP_01795592.1| predicted methyltransferase [Haemophilus influenzae PittII]
gi|145270881|gb|EDK10800.1| predicted methyltransferase [Haemophilus influenzae PittII]
gi|309750465|gb|ADO80449.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Haemophilus
influenzae R2866]
Length = 711
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|170769246|ref|ZP_02903699.1| putative RNA methylase family UPF0020 [Escherichia albertii
TW07627]
gi|170121898|gb|EDS90829.1| putative RNA methylase family UPF0020 [Escherichia albertii
TW07627]
Length = 702
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + DLIF DPP D F
Sbjct: 591 HRLIQADCLAWLRD-AKEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|148827258|ref|YP_001292011.1| 23S rRNA m(2)G2445 methyltransferase [Haemophilus influenzae
PittGG]
gi|229560166|sp|A5UFS2|RLML_HAEIG RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|148718500|gb|ABQ99627.1| predicted methyltransferase [Haemophilus influenzae PittGG]
Length = 711
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|21675036|ref|NP_663101.1| hypothetical protein CT2227 [Chlorobium tepidum TLS]
gi|21648272|gb|AAM73443.1| hypothetical protein CT2227 [Chlorobium tepidum TLS]
Length = 55
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADP 47
+ II G+S + LP +SV L+ P
Sbjct: 1 MKTTHTIIHGDSRQ-MNLLPDRSVHLVVTSP 30
>gi|260583261|ref|ZP_05851037.1| 23S rRNA m(2) methyltransferase [Haemophilus influenzae NT127]
gi|260093668|gb|EEW77580.1| 23S rRNA m(2) methyltransferase [Haemophilus influenzae NT127]
Length = 711
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIKGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|326778430|ref|ZP_08237695.1| adenine-specific DNA modification methyltransferase [Streptomyces
cf. griseus XylebKG-1]
gi|326658763|gb|EGE43609.1| adenine-specific DNA modification methyltransferase [Streptomyces
cf. griseus XylebKG-1]
Length = 375
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 200 GEKLHP-----TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
G KLH + A+ ++ S + G +LDP G GT A L R I
Sbjct: 30 GHKLHSLCSYQGKFKPAMAHWLVKSFSPEGGRVLDPLGGVGTVPFEAALLGRR--AITND 87
Query: 255 QDYIDIATKRIASVQPLGNIELTVLT 280
+ + P + L ++
Sbjct: 88 KSPLAATVGAAKMTPPTIDRALEQIS 113
>gi|229889503|sp|B6ELD3|RLML_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
Length = 705
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N N + + ++ + + L++ DLIF DPP R D +
Sbjct: 581 NMNTNDQTGTQHQFLQADCLQWLQQ-AEGEFDLIFIDPP----TFSNSKRMDQT------ 629
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F + L +R+L+ +GT+ + N L N
Sbjct: 630 -----FDVQRDHIML----LENLKRMLRQDGTVVFSNNKRNFKMDEEALDKAGLQAKN-- 678
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
+ +++ P+ R + N
Sbjct: 679 ISKQTLPLDFARNKHIHNCW 698
>gi|145628992|ref|ZP_01784791.1| possible SAM-dependent methyltransferase [Haemophilus influenzae
22.1-21]
gi|144978495|gb|EDJ88218.1| possible SAM-dependent methyltransferase [Haemophilus influenzae
22.1-21]
Length = 711
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|51980187|ref|YP_077254.1| Cytosine methylase, similar to PspGI methylase [Sulfolobus virus
STSV1]
gi|51890320|emb|CAH04244.1| Cytosine methylase, similar to PspGI methylase [Sulfolobus virus
STSV1]
Length = 412
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+P + +++ IL + KPG + DPF G GT G V++ S++ E+ I++
Sbjct: 38 YPAKFIPQVVAYILKTYCKPGMKVFDPFAGYGTVGVVSRVYGHSYVLWELNPI-INVTHN 96
Query: 264 RIASVQPLGNIELTVLT 280
+ ++E +
Sbjct: 97 TAIMTRAEADVEKIMKD 113
>gi|3789861|gb|AAC67523.1| PspGI methylase [Pyrococcus sp. GI-H]
Length = 433
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 29/73 (39%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G +P + + + K +ILDPF GSGT AK + G ++ I
Sbjct: 39 HGMHSYPAMMIPQVARKSIKLWGKNAKVILDPFCGSGTVLVEAKIKNINSYGFDINPLAI 98
Query: 259 DIATKRIASVQPL 271
++ + + P
Sbjct: 99 LLSKVKTTPIDPR 111
>gi|255524750|ref|ZP_05391701.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
P7]
gi|255511523|gb|EET87812.1| DNA methylase N-4/N-6 domain protein [Clostridium carboxidivorans
P7]
Length = 317
Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 50/178 (28%), Gaps = 22/178 (12%)
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN--- 197
+ + + I + + + + S + + R+
Sbjct: 9 KKTYDKLKKDGFILWKKTKRGDVEIWWPYVKYYLEGRTKRPSPLWNDLDGNKKATRDVRL 68
Query: 198 -KDGEKLHPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLR------RSF 248
DG K+ KP + R++ S DIILD F GS ++ + R F
Sbjct: 69 LFDGIKVFDYSKPIDFIQRLICISPNANNEDIILDFFSGSASTANAVMSINADDLGKRRF 128
Query: 249 IGIEM------KQDYIDIATKRI----ASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
I I++ + K I ++ K + V +
Sbjct: 129 IMIQLPEQTDENSEACKAGYKNICEIGKERIRRAGEKIVQNKDKEGIENLDIGFKVFK 186
>gi|320202346|gb|EFW76917.1| putative RNA methylase family UPF0020 [Escherichia coli EC4100B]
Length = 370
Score = 43.5 bits (101), Expect = 0.049, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 259 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 302
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 303 HLALM----KDLKRLLRAGGTIMFSNNKR 327
>gi|154151745|ref|YP_001405363.1| methyltransferase DNA modification enzyme [Candidatus Methanoregula
boonei 6A8]
gi|154000297|gb|ABS56720.1| methyltransferase DNA modification enzyme [Methanoregula boonei
6A8]
Length = 414
Score = 43.5 bits (101), Expect = 0.049, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 28/82 (34%)
Query: 184 WLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK 243
+ + +R + E + L + T+ DII DPF G GT+ A
Sbjct: 42 YTGEFWTSRQRQASSLHEISYRACFKPQLPGFFIDLLTRKCDIIYDPFSGRGTTAIEAGL 101
Query: 244 LRRSFIGIEMKQDYIDIATKRI 265
R I + +A R
Sbjct: 102 RGRKVIANDANPLSRVLAEPRF 123
>gi|134301838|ref|YP_001121806.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|229560159|sp|A4IXN4|RLML_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|134049615|gb|ABO46686.1| Putative RNA methylase family [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 717
Score = 43.5 bits (101), Expect = 0.050, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NNIDAKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|290953767|ref|ZP_06558388.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
holarctica URFT1]
gi|295312872|ref|ZP_06803601.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
holarctica URFT1]
Length = 708
Score = 43.5 bits (101), Expect = 0.051, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NNIDAKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
E + LK +G L+ +Y +L+ N ++ I
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENIDKIC 697
>gi|88855497|ref|ZP_01130161.1| hypothetical protein A20C1_01701 [marine actinobacterium PHSC20C1]
gi|88815404|gb|EAR25262.1| hypothetical protein A20C1_01701 [marine actinobacterium PHSC20C1]
Length = 699
Score = 43.5 bits (101), Expect = 0.051, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 11/123 (8%)
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
R I ++ Y ++ + L + +EP + L+E+ L++PG L
Sbjct: 578 RRMIATVIRDGYRKLS----KNEVVEPTDALQADVPEVSEP--SLAELIEQFLLKPGDFL 631
Query: 306 --TNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSETCN--GWNFWYFEKLGELHSI 361
+ + A + DGTL+ + + E N G++FW + L +
Sbjct: 632 DPVDPNWEVDAAITDDGTLLIDG-VHEFDSLDEAAHHLEVTNMSGYDFWALQTDKGLIPL 690
Query: 362 NTL 364
+ L
Sbjct: 691 SDL 693
>gi|307250041|ref|ZP_07532006.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857926|gb|EFM90017.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 320
Score = 43.5 bits (101), Expect = 0.051, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 200 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 250
>gi|315925087|ref|ZP_07921304.1| conserved hypothetical protein [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315621986|gb|EFV01950.1| conserved hypothetical protein [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 43
Score = 43.5 bits (101), Expect = 0.052, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 21 DKIIKGNSISVLEKLPA---KSVDLIFADPPYN 50
+ II+G+++ L L VD I+ DPPYN
Sbjct: 6 NFIIEGDNLQALYLLEKTHRGKVDYIYIDPPYN 38
>gi|284007562|emb|CBA73091.1| RNA methylase [Arsenophonus nasoniae]
Length = 705
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + ++I+ + ++ L + DLIF DPP R + +
Sbjct: 583 NQLTGQQHRLIQADCLAWLAQTSD-KFDLIFIDPP----TFSNSKRMNTT---------- 627
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F + +R+L+P+GT+ + + L + ++
Sbjct: 628 -FDVQRDHINLMM----QIKRLLRPDGTVVFSNNKRGFKMDMAGITQLGLTAKE--ITQQ 680
Query: 134 SNPMPNFRGRRFQNAH 149
+ + R R+ N
Sbjct: 681 TISLDFTRNRQIHNCW 696
>gi|220907136|ref|YP_002482447.1| DNA methylase N-4/N-6 domain-containing protein [Cyanothece sp. PCC
7425]
gi|219863747|gb|ACL44086.1| DNA methylase N-4/N-6 domain protein [Cyanothece sp. PCC 7425]
Length = 739
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ G + T++ ++ + + ++ GD +LDPF GSG + + R I I++
Sbjct: 190 KRHFGVHGYFTKQTWNVVQEYIRNFSQIGDTVLDPFGGSGVTAIESLMTNRKAIHIDINP 249
Score = 39.6 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 49/326 (15%), Positives = 96/326 (29%), Gaps = 34/326 (10%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG----- 55
++ K ++I N +I +++KG + L + +++VD I+ DPPY ++
Sbjct: 403 IAAKKEISIKINNQTIQNA--QVLKGTATD-LSFIRSETVDYIYTDPPYGKKIPYLDLSI 459
Query: 56 ------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK-PNGTLWVIGSY 108
L + + ++ + + Y+ + RVLK +V
Sbjct: 460 MWNSWLDLEVTEEDYEQEAIEGGERNKTKDEYNQLIAKSIQEMYRVLKFERWMSFVFAHK 519
Query: 109 HNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNY 168
F + ++ N P+F+ R+ + K +
Sbjct: 520 DPEFWHLIVETAEKCGFEYAGAVKQGNGQPSFKKRQNPFTVLSGQLIINFKKVRKPRSIM 579
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII- 227
A N + + K L L T+ I
Sbjct: 580 KAALGMN--ITEIIIQTCEGIIAKNSGATLEQINDELIIKGLELG--FLDLLTEEYSDIT 635
Query: 228 ---LDPFFGSGTSGAVAKKLRRSFI-GIEMK--QDYIDIATKRIASVQPLGNIELTVLTG 281
LD F + + + F I++ Y I+ R EL
Sbjct: 636 PFLLDTFDYDHQTKLFTIRHNQKFKSHIDLNLRVKYYLISYLR--------RQELENKIS 687
Query: 282 KRTEPRVAFNLLVERGLIQPGQILTN 307
E + L+ G+ Q +T+
Sbjct: 688 TFDEIILHIMPLLRNGITPEEQTITS 713
>gi|171464205|ref|YP_001798318.1| methyltransferase [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171193743|gb|ACB44704.1| methyltransferase [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 198
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I++ +S+ L++ S +LIF DPP+ D +++ A D S Y
Sbjct: 106 ILQRDSLEFLKQQANGSTNLIFIDPPF-----RDSSLLDQAVIGA-GRICDDASGGGIYV 159
Query: 83 AFTRAWLLACRRVLKPNGTL 102
F + L L P
Sbjct: 160 EFPSSRLREEIEALLPGWHC 179
>gi|254369417|ref|ZP_04985429.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122367|gb|EDO66507.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 717
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NNIDAKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|145641446|ref|ZP_01797024.1| predicted methyltransferase [Haemophilus influenzae R3021]
gi|145273737|gb|EDK13605.1| predicted methyltransferase [Haemophilus influenzae 22.4-21]
Length = 711
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DLIF DPP S + +SWD
Sbjct: 593 NDIKGKQHKLIQADCLQWLEKC-DRQFDLIFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + +L+ L + + K
Sbjct: 640 VQRDH-------VKLMSNLKRVLSNNGTIVFSNNKRGFKMNLVVLEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|78773895|gb|ABB51240.1| methyltransferase [Arthrospira platensis]
Length = 391
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ + Q L+ IL P +ILDPF GSGT A L+ G ++
Sbjct: 18 KTRSNLFSWRGQFSPQLIEIILTQYCPPDAVILDPFAGSGTVLLEAGNLQLPAYGFDINP 77
Query: 256 DYIDI--ATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
+ + I + I++ R P F
Sbjct: 78 AAYILSQTYQLINKPRKQELIKILRELVDREFPYRIFQN 116
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 14/89 (15%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--------------DSWDKFSSFEA 80
LP S+D I PPY N + + + ++F +
Sbjct: 193 LPNNSIDFIITSPPYINVFNYHQNYRKSAELLGWDLLTIARSEIGSNRANRSNRFYTVVQ 252
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
Y L RV K N + ++ +
Sbjct: 253 YCLDMAETLRELSRVSKKNARIILVIGHQ 281
>gi|89256596|ref|YP_513958.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
holarctica LVS]
gi|115315025|ref|YP_763748.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
holarctica OSU18]
gi|156502726|ref|YP_001428791.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010623|ref|ZP_02275554.1| ribosomal L29e protein family, putative [Francisella tularensis
subsp. holarctica FSC200]
gi|254367914|ref|ZP_04983934.1| hypothetical protein FTHG_01213 [Francisella tularensis subsp.
holarctica 257]
gi|122324964|sp|Q0BLC3|RLML_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|122500563|sp|Q2A2U4|RLML_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|229560156|sp|A7NCY2|RLML_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|89144427|emb|CAJ79726.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129924|gb|ABI83111.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gi|134253724|gb|EBA52818.1| hypothetical protein FTHG_01213 [Francisella tularensis subsp.
holarctica 257]
gi|156253329|gb|ABU61835.1| RNA methylase family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 717
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NNIDAKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|56708023|ref|YP_169919.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670494|ref|YP_667051.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
tularensis FSC198]
gi|224457106|ref|ZP_03665579.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370506|ref|ZP_04986511.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254874823|ref|ZP_05247533.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|81597544|sp|Q5NGC3|RLML_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|122970958|sp|Q14HS5|RLML_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|56604515|emb|CAG45556.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320827|emb|CAL08939.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568749|gb|EDN34403.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254840822|gb|EET19258.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159213|gb|ADA78604.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
tularensis NE061598]
Length = 717
Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NNIDAKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|319790156|ref|YP_004151789.1| methyltransferase [Thermovibrio ammonificans HB-1]
gi|317114658|gb|ADU97148.1| methyltransferase [Thermovibrio ammonificans HB-1]
Length = 191
Score = 43.5 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 23 IIKGNSISVLEKLPA--KSVDLIFADPPY 49
II G+ L++L + D I+ADPPY
Sbjct: 100 IICGDYTEALKRLAKRGEKFDFIYADPPY 128
>gi|307253729|ref|ZP_07535591.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306858795|gb|EFM90846.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 324
Score = 43.5 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 206 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 256
>gi|209695054|ref|YP_002262983.1| 23S rRNA m(2)G2445 methyltransferase [Aliivibrio salmonicida
LFI1238]
gi|208009006|emb|CAQ79236.1| putative RNA methylase [Aliivibrio salmonicida LFI1238]
Length = 718
Score = 43.5 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 22/140 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N N + + ++ + + L++ DLIF DPP R D +
Sbjct: 594 NMNTNDQTGTQHQFLQADCLQWLQQ-AEGEFDLIFIDPP----TFSNSKRMDQT------ 642
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F + L +R+L+ +GT+ + N L N
Sbjct: 643 -----FDVQRDHIML----LENLKRMLRQDGTVVFSNNKRNFKMDEEALDKAGLQAKN-- 691
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
+ +++ P+ R + N
Sbjct: 692 ISKQTLPLDFARNKHIHNCW 711
>gi|169825524|ref|YP_001695699.1| hypothetical protein Bsph_p110 [Lysinibacillus sphaericus C3-41]
gi|168994801|gb|ACA42340.1| hypothetical protein Bsph_p110 [Lysinibacillus sphaericus C3-41]
Length = 350
Score = 43.5 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 12 NQNSIFEWKDKI-------IKGNSISVLEKLPAKSVDLIFADPPY 49
N NS+ + + +++ L+ +SVD++ DPPY
Sbjct: 195 NNNSLAHMTNDLNTKYETDFHMDALEFLKLFADESVDVVLFDPPY 239
>gi|90407351|ref|ZP_01215536.1| hypothetical protein PCNPT3_03917 [Psychromonas sp. CNPT3]
gi|90311502|gb|EAS39602.1| hypothetical protein PCNPT3_03917 [Psychromonas sp. CNPT3]
Length = 165
Score = 43.5 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 3 QKNSLAINENQNSIFEWK--D-KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+++ L + + ++ K + +I+ +SIS L+++ KS ++IF DPP+N
Sbjct: 57 ERDKLVCQQLKQNLQNLKVENALVIETDSISYLQQIAKKSFNIIFIDPPFN 107
>gi|307566477|ref|ZP_07628909.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
gi|307344821|gb|EFN90226.1| DNA (cytosine-5-)-methyltransferase [Prevotella amnii CRIS 21A-A]
Length = 565
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 36/215 (16%), Positives = 59/215 (27%), Gaps = 24/215 (11%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ G + + + + + N + +
Sbjct: 71 IQYGRVSKIEEYGITKVSQQNLIEYYKSYHGVRETKWKEKLGSDLNWALSFDTLTEAETT 130
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL---------VSSTKPGDIILDPFFGSGTSGAV 240
RL G+ L+ L S GD ILDPF GSGT+
Sbjct: 131 KHVHRLHPYKGK------FIPQLVEYFLDSHVDKFKQRSYFSEGDNILDPFAGSGTTLVQ 184
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE---LTVLTGKRTEPRVAFNLLVERG 297
A +L + IGI++ + I ++ K E N E+
Sbjct: 185 ANELNMNAIGIDISEFNTLINNCKLMRYDYDNLDYEIKRITSVLKNIEIHDNTNKF-EQK 243
Query: 298 LIQPGQIL---TNAQGNISATVCADGTLISGTELG 329
L++ I + V LI G + G
Sbjct: 244 LLEELAIFNNKYFPVPDYKYKVR--NKLIDGKKYG 276
>gi|284051869|ref|ZP_06382079.1| hypothetical protein AplaP_10401 [Arthrospira platensis str.
Paraca]
gi|291566633|dbj|BAI88905.1| methyltransferase [Arthrospira platensis NIES-39]
Length = 391
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ + Q L+ IL P +ILDPF GSGT A L+ G ++
Sbjct: 18 KTRSNLFSWRGQFSPQLIEIILTQYCPPDAVILDPFAGSGTVLLEAGNLQLPAYGFDINP 77
Query: 256 DYIDI--ATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
+ + I + I++ R P F
Sbjct: 78 AAYILSQTYQLINKPRKQELIKILRELVDREFPYRIFQN 116
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 14/89 (15%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT--------------DSWDKFSSFEA 80
LP S+D I PPY N + + + ++F +
Sbjct: 193 LPNNSIDFIITSPPYINVFNYHQNYRKSAELLGWDLLTIARSEIGSNRANRSNRFYTVVQ 252
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
Y L RV K N + ++ +
Sbjct: 253 YCLDMAETLRELSRVSKKNARIILVIGHQ 281
>gi|91784566|ref|YP_559772.1| hypothetical protein Bxe_A1233 [Burkholderia xenovorans LB400]
gi|91688520|gb|ABE31720.1| hypothetical protein Bxe_A1233 [Burkholderia xenovorans LB400]
Length = 438
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
+ + + Q + + K+++ ++ L+ +P VDL+ PPY +
Sbjct: 221 AYDMRDMQKGQTKSRAKLLQSDAR-TLKGIPDARVDLVITSPPYANNYDY 269
Score = 39.6 bits (91), Expect = 0.69, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
++LDPF GSGT A K G+E +A ++A E + ++
Sbjct: 67 VVLDPFVGSGTVCVEADKAGIKSYGVESHPFVYRLARGKLAWASSPEAFEAAIAAVEK 124
>gi|218261571|ref|ZP_03476331.1| hypothetical protein PRABACTJOHN_01999 [Parabacteroides johnsonii
DSM 18315]
gi|218223950|gb|EEC96600.1| hypothetical protein PRABACTJOHN_01999 [Parabacteroides johnsonii
DSM 18315]
Length = 911
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 38 KSVDLIFADPPYNLQLNGQ--------LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
SVD IF DPP+ +N R + V ++ + S Y +
Sbjct: 511 NSVDYIFTDPPFGANINYSELNSLPEAWLRVTTNNETEVIENSAQGKSPAFYHNEMQKCF 570
Query: 90 LACRRVLKPNGTLWVIGS 107
R+LKP + V S
Sbjct: 571 SEYYRILKPGRWMTVEFS 588
Score = 39.3 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVA 241
+ T+ P + R ++ T+PGDII D F G+G +G A
Sbjct: 136 YHTKVPHPAIMRYILHYTQPGDIIFDGFCGTGMTGVAA 173
>gi|218780078|ref|YP_002431396.1| hypothetical protein Dalk_2235 [Desulfatibacillum alkenivorans
AK-01]
gi|218761462|gb|ACL03928.1| hypothetical protein Dalk_2235 [Desulfatibacillum alkenivorans
AK-01]
Length = 407
Score = 43.5 bits (101), Expect = 0.056, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
G+K + P ++ +L T P D+++DP GSGT+ VA+ + R +G +++ D
Sbjct: 27 GDKNYIGATPSWIIWNLLQRYTNPKDLVVDPMAGSGTTLDVARDISRRALGYDLQPTRKD 86
Query: 260 I 260
I
Sbjct: 87 I 87
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 15/131 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE-AY 81
I + ++ + L + D +F DPPY+ H + D + S+ E Y
Sbjct: 87 IFRSDARKL--PLENEKADFVFIDPPYST----------HVKYSGLPDCIGELSANEPDY 134
Query: 82 DAFTRAWLLACRRVLKPNGTL--WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ R+L+P+ + +V S+ + L + +
Sbjct: 135 YKAMEIVIKEINRILRPDRYMALYVSDSFEKDKAFNAIGFELFKRMQKYFDPVDIICVVR 194
Query: 140 FRGRRFQNAHE 150
+ +N
Sbjct: 195 HNAKLKKNNWH 205
>gi|163813862|ref|ZP_02205256.1| hypothetical protein COPEUT_00015 [Coprococcus eutactus ATCC 27759]
gi|158450732|gb|EDP27727.1| hypothetical protein COPEUT_00015 [Coprococcus eutactus ATCC 27759]
Length = 183
Score = 43.5 bits (101), Expect = 0.056, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 39/145 (26%), Gaps = 12/145 (8%)
Query: 32 LEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
L + +S+DLI PPY + P E +
Sbjct: 48 LSFIKDESIDLICTHPPYADIIQYSKETPGDISHLKY----------EVFLKELEQVAKE 97
Query: 92 CRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
RVLK G ++IG + L + D +R + + + +
Sbjct: 98 SYRVLKKQGICTFMIGDIRKKGYVLP-LGMNSMQKFVDTGFRLKEIIIKEQHNCRSSDYW 156
Query: 151 TLIWASPSPKAKGYTFNYDALKAAN 175
A Y F + N
Sbjct: 157 EGRERKFLMLAHEYIFILEKANDHN 181
>gi|256425855|ref|YP_003126508.1| methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
gi|256040763|gb|ACU64307.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
Length = 315
Score = 43.5 bits (101), Expect = 0.057, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 3 QKNSLAINENQNSIFEW---KDKIIKGNSISVLEKLPAKSVDLIFADPP 48
K LA E + ++ K + + + + L+ LPA++ DL+ DPP
Sbjct: 186 SKTYLAWAEENMKLNDFDVSKHQFVHADVLQYLDTLPAETFDLVVLDPP 234
>gi|332184033|gb|AEE26287.1| Methyltransferase [Francisella cf. novicida 3523]
Length = 717
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+I K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NNIDAKKHNFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGVLYFSNNYRRFKISPQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKSIHNCW 712
>gi|325564055|gb|ADZ31413.1| M.StuI [Streptomyces tubercidicus]
Length = 681
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 35 LPAKSVDLIFADPPY--NLQLN-----GQLYRPDHSLVDAVTDS-------WDKFSSFEA 80
+P SVDL+ DPPY N+ + +D+ + +
Sbjct: 455 IPDGSVDLVVTDPPYMDNVHYAELADFFHAWLQHMQPYIGYSDATTTRRVGEVQHADPAE 514
Query: 81 YDAFTRAWLLACRRVLKPNG 100
+ A RVLKP G
Sbjct: 515 FGKAIEAVWTESARVLKPGG 534
Score = 36.6 bits (83), Expect = 7.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G I+LDPF GSG +G A KL + ++
Sbjct: 61 GAIVLDPFSGSGVTGVEALKLGAKAVCFDINPVA 94
>gi|241668604|ref|ZP_04756182.1| 23S rRNA m(2)G2445 methyltransferase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254877138|ref|ZP_05249848.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843159|gb|EET21573.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 718
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N++ K I+ + IS L+ ++ D+IF DPP S + D D
Sbjct: 601 NNLDIKKHNFIQADCISWLKS-NSEKFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y ++ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGVLYFSNNYRRFKMSQEIIAKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|189500401|ref|YP_001959871.1| hypothetical protein Cphamn1_1464 [Chlorobium phaeobacteroides BS1]
gi|189495842|gb|ACE04390.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
Length = 394
Score = 43.5 bits (101), Expect = 0.059, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 3 QKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLY 58
N+L E + + +I+G++ VL +L ++ S DL+ DPP + L
Sbjct: 250 SHNALLRAEKNAKLNNLSNYDMIEGDAFEVLHRLISEKRSYDLVILDPPSFTKSRKNLS 308
>gi|320105183|ref|YP_004180774.1| ParB domain-containing protein nuclease [Isosphaera pallida ATCC
43644]
gi|319752465|gb|ADV64225.1| ParB domain protein nuclease [Isosphaera pallida ATCC 43644]
Length = 518
Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 8/104 (7%)
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEA 211
L S + A N W ++ HP P
Sbjct: 240 LDQGSKTIHAAHKDLRRRDRLTLNFQPTPYDVWHFRH--------DRAYGVHHPGSIPPG 291
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
++++ L T PGD+++DP G G + VA + R + +++
Sbjct: 292 IVAQTLHYYTAPGDLVVDPLAGGGVTLDVADAMGRRCLAYDIEP 335
>gi|290967976|ref|ZP_06559525.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
28L]
gi|290781882|gb|EFD94461.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
28L]
Length = 248
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
+ IL+ ++ D++LD F G GT+ AK L R+ IG+++ + + ++I
Sbjct: 44 IPRNILLRYSEENDLVLDQFAGGGTTLVEAKLLNRNIIGVDVNETALARCREKINFEH 101
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
+ KG++ L+ + S+DLI PPY D ++ + +
Sbjct: 110 LYKGDAR-TLDFIKDNSIDLICTHPPY----------ADIIKYSEDIEADLSHLKVKDFL 158
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSY 108
R RVLK + V+
Sbjct: 159 IAMRDVAAESYRVLKKDKFCAVLMGD 184
>gi|242239087|ref|YP_002987268.1| 23S rRNA m(2)G2445 methyltransferase [Dickeya dadantii Ech703]
gi|242131144|gb|ACS85446.1| putative RNA methylase [Dickeya dadantii Ech703]
Length = 705
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I + ++ + + DLIF DPP R D + F
Sbjct: 590 HRLIHADCLAWMRD-TREQFDLIFIDPP----TFSNSKRMDAT-----------FDVQRD 633
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+P GT+ +
Sbjct: 634 HLALM----KDLKRILRPGGTIMFSNNKR 658
>gi|270261226|ref|ZP_06189499.1| hypothetical protein SOD_a04510 [Serratia odorifera 4Rx13]
gi|270044710|gb|EFA17801.1| hypothetical protein SOD_a04510 [Serratia odorifera 4Rx13]
Length = 706
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 22/140 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++I + +S L + D+IF DPP R +++
Sbjct: 580 NLRVNGLTGKQHRLIHADCLSWLHN-ADEQFDVIFIDPP----TFSNSKRMENT------ 628
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F + + +R+L+ NGT+ + L L
Sbjct: 629 -----FDVQRDHLVLMQD----LKRLLRRNGTIMFSNNKRGFQMDMAGLSELGLEAKE-- 677
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
+ ++ R R+ N
Sbjct: 678 ITAQTQSQDFARNRQIHNCW 697
>gi|228873813|ref|YP_204670.2| 23S rRNA m(2)G2445 methyltransferase [Vibrio fischeri ES114]
gi|229889498|sp|Q5E5B4|RLML_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
Length = 705
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 22/140 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N N + + ++ + + L++ DLIF DPP R + +
Sbjct: 581 NMNTNGQTGTQHQFLQADCLQWLQQ-ADGEFDLIFIDPP----TFSNSKRMEQT------ 629
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F + L +R+L+ NGT+ + N L+ +
Sbjct: 630 -----FDVQRDHIML----LENLKRMLRENGTIVFSNNKRNFKMDEAGLEKAG--LKAKN 678
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
+ +++ P+ R + N
Sbjct: 679 ISKQTLPLDFARNKHIHNCW 698
>gi|88601443|ref|YP_501621.1| putative RNA methylase [Methanospirillum hungatei JF-1]
gi|88186905|gb|ABD39902.1| N2-methylguanosine tRNA methyltransferase [Methanospirillum
hungatei JF-1]
Length = 317
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 205 PTQKPEALLSRILVSSTK-----PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
P P ++ R++ + PG+ ILDPF G+G + A + + G + ++ I
Sbjct: 153 PFFHPGVMMPRMIRALINMSGALPGEWILDPFCGTGGTLIEASLIGCNAAGTDADREMI 211
>gi|13358040|ref|NP_078314.1| adenine specific DNA methyltransferase [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|170762184|ref|YP_001752561.1| DNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|11356738|pir||A82886 adenine specific DNA methyltransferase UU477 [imported] -
Ureaplasma urealyticum
gi|6899472|gb|AAF30889.1|AE002144_3 adenine specific DNA methyltransferase [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|168827761|gb|ACA33023.1| DNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
Length = 360
Score = 43.1 bits (100), Expect = 0.062, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 12/131 (9%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEMK 254
KP L+ +L + +LD F GSGT+G + R+F I
Sbjct: 199 NIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVLELNKEDGGNRTFTLITNN 258
Query: 255 QDYI--DIATKRIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ- 309
++ I ++ +R+ + E+ + +P + + + I +
Sbjct: 259 ENQIGTNVCYERLYRINNGIGTKNEIDFDWVSKNKPYLNKLNVYDLKYFDTNPIEVDNSK 318
Query: 310 -GNISATVCAD 319
+ A + D
Sbjct: 319 IKKVFAKMLVD 329
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 8/154 (5%)
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
L + +LK +G ++V + + ++ + + +
Sbjct: 1 MMNERLKLAKNLLKNDGVIFVSIDDNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNK 60
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAA--NEDVQMRSDWLIPICSGSERLRNKDGE 201
HE ++ S + + + +D S ++ + + KD +
Sbjct: 61 LIYEGHEYILCYSKNNYNFCLSEKNKKMSGFIKYKDKNNNSFFINSDIIRNNFGK-KDNK 119
Query: 202 KLHPTQKPEALL----SRILVSSTKPGDIILDPF 231
H + E L + + IL PF
Sbjct: 120 FEHRNKAYEDLSKEDKEKWNLKLDNKN-YILVPF 152
>gi|331641478|ref|ZP_08342613.1| putative oxidoreductase [Escherichia coli H736]
gi|331038276|gb|EGI10496.1| putative oxidoreductase [Escherichia coli H736]
Length = 370
Score = 43.1 bits (100), Expect = 0.063, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + + DLIF DPP D F
Sbjct: 259 HRLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 302
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 303 HLALM----KDLKRLLRAGGTIMFSNNKR 327
>gi|331695069|ref|YP_004331308.1| DNA methylase N-4/N-6 domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326949758|gb|AEA23455.1| DNA methylase N-4/N-6 domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 297
Score = 43.1 bits (100), Expect = 0.063, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
P A+ + + ++PGD++LDP G+GT+ A + R +G+ + + + +
Sbjct: 35 PPAVAAHAIALYSRPGDLVLDPDCGAGTALVEALRAGRHALGLTARTRWWTLTRANV 91
>gi|326407996|gb|ADZ65064.1| adenine-specific DNA methylase [Lactococcus lactis subsp. lactis
CV56]
Length = 728
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 15/222 (6%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS-SFEAYD 82
+++ ++ SVD + DPPY+ + + Y V +WD SF
Sbjct: 123 YHLDALDFMKMFDTASVDGVLYDPPYSPRQVSECYNNIGLNV-----TWDTTKASFWGNH 177
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRG 142
+ + + G Y F I +L + ND +
Sbjct: 178 KREISRITKIGGKVITFGWNSGGIGYKYGFEISRILLVPHGGWHNDTICTVEIKTHEGVY 237
Query: 143 RRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
+ + + + + E + + R G
Sbjct: 238 STMEQKESEVQI------DGVNSSLTETDRILIEKLSALPENYWDFKEDDTR-EYTHGLH 290
Query: 203 LHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAK 242
+P + I+ P +LDPF GSGT K
Sbjct: 291 NYPAMMVCPISRNIIRMMKDIMPISSLLDPFSGSGTVLVEGK 332
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
I K ++ ++L+ +P S DLI PPY
Sbjct: 533 TIYKNDA-ALLDDVPNNSFDLIVTSPPYG 560
>gi|159027068|emb|CAO89253.1| avaIM [Microcystis aeruginosa PCC 7806]
Length = 459
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 6/38 (15%), Positives = 19/38 (50%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
++ +G+ + +L ++ ++ + I PPY + +
Sbjct: 254 QLYQGSCLEILPEISSEKYNSIITSPPYCNRYDYTRIY 291
Score = 40.0 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
L+ +L ILDPF GSGT+ A S GIE+ ++ R
Sbjct: 50 FSVDLIVYLLEKYGIKRGKILDPFAGSGTTLFAAAARGLSADGIELLPIGQELIITRQIL 109
Query: 268 VQPLGNIEL 276
L + ++
Sbjct: 110 ENGLNSDDI 118
>gi|73661338|ref|YP_300119.1| modification methylase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72493853|dbj|BAE17174.1| putative modification methylase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 347
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ + E++ + + ++ + ILDPF GSGT+ + KL R+ IGI++ I
Sbjct: 7 YHAKFHESIPNEYINKYSQEFETILDPFCGSGTTLKESLKLGRNAIGIDVSPIAI 61
>gi|159028688|emb|CAO88159.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 357
Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 141 RGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDG 200
+ AH L A + K + + N D Q S + G
Sbjct: 102 MRKAPTEAHYWLNQA---LEKKWNSTDIRLAITGNGDPQKFSWLRCGTFWYFSHCDPRFG 158
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
K +P + P + + ++ T+P D+++D G G++ A+ L R +G ++
Sbjct: 159 IK-YPGRIPGQIAANLIHYFTEPDDLVVDLMAGGGSTLDAAQFLDRRCLGYDL 210
>gi|88800046|ref|ZP_01115616.1| hypothetical protein MED297_16594 [Reinekea sp. MED297]
gi|88777172|gb|EAR08377.1| hypothetical protein MED297_16594 [Reinekea sp. MED297]
Length = 713
Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 23/109 (21%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K++L +N + + I + + L + + DLI DPP S
Sbjct: 589 KDNLQLNGGKAGPN---HRFIHSDCLQWLSE-SKDTFDLIIMDPP------------TFS 632
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
+ D+ D E F ++L P+G L +Y +
Sbjct: 633 NSARMKDTLDVQRDHE----FLVD---HAMKLLSPDGVLIFSNNYRKFY 674
>gi|119715341|ref|YP_922306.1| protein of unknown function DUF1524 RloF [Nocardioides sp. JS614]
gi|119536002|gb|ABL80619.1| protein of unknown function DUF1524 RloF [Nocardioides sp. JS614]
Length = 726
Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 247 SFIGIEMKQDYIDIATKRIASVQ-PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
+ ++ Q + + P G+ V + + + LV+ GLI PG L
Sbjct: 578 DWSEAQIDQRTAALIDVLLEVWPVPEGHNGQVVDPQAKAQDWIELKHLVDAGLIAPGDKL 637
Query: 306 TNAQGNI---SATVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSIN 362
+ A + D + + S + + NGW FW L
Sbjct: 638 IATHRDFAGREAEIGDDLRIHLDGKAFSTPSGAGQHLRKKATNGWYFWALADGRRLR--- 694
Query: 363 TLRILV 368
+R
Sbjct: 695 DVRAEF 700
>gi|303251189|ref|ZP_07337368.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302649923|gb|EFL80100.1| type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 448
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 200 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 250
>gi|85058998|ref|YP_454700.1| 23S rRNA m(2)G2445 methyltransferase [Sodalis glossinidius str.
'morsitans']
gi|123519637|sp|Q2NU80|RLML_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|84779518|dbj|BAE74295.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 713
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++I+ + ++ L + ++ D+IF DPP
Sbjct: 582 NLRSNGLVGRQHRLIQADCLAWLA-MAQETFDVIFIDPP---------------TFSNSK 625
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
D F + A +R+L+P GTL +
Sbjct: 626 RMADTFDVQRDHLALM----AQLKRLLRPGGTLMFSNNKR 661
>gi|14521158|ref|NP_126633.1| hypothetical protein PAB1736 [Pyrococcus abyssi GE5]
gi|5458376|emb|CAB49864.1| Predicted archaeal methyltransferase [Pyrococcus abyssi GE5]
Length = 285
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 8 AINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPP 48
IN +FEW + K+I G+S +++ +S D+I DPP
Sbjct: 165 KINPWSRELFEWPNIKVIHGDSYELVKNFDNESFDVIIHDPP 206
>gi|14590866|ref|NP_142938.1| hypothetical protein PH1028 [Pyrococcus horikoshii OT3]
gi|3257442|dbj|BAA30125.1| 281aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 281
Score = 43.1 bits (100), Expect = 0.069, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
KI++G+S +++K +S D+I DPP
Sbjct: 179 KILQGDSFDLIKKFEDESFDVIIHDPP 205
>gi|167628048|ref|YP_001678548.1| 23S rRNA m(2)G2445 methyltransferase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|229560155|sp|B0U0U4|RLML_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|167598049|gb|ABZ88047.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 718
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 20/136 (14%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N++ K I+ + IS L+ ++ D+IF DPP S + D D
Sbjct: 601 NNLDIKKHNFIQADCISWLKS-NSEKFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y ++ N ++ + +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGVLYFSNNYRRFKMSQEIIAKFNCENIDKVCLSR 700
Query: 134 SNPMPNFRGRRFQNAH 149
++ +
Sbjct: 701 DFLSNKNIHNCWEIKY 716
>gi|59479995|gb|AAW85782.1| predicted methyltransferase [Vibrio fischeri ES114]
Length = 718
Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 22/140 (15%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N N + + ++ + + L++ DLIF DPP R + +
Sbjct: 594 NMNTNGQTGTQHQFLQADCLQWLQQ-ADGEFDLIFIDPP----TFSNSKRMEQT------ 642
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F + L +R+L+ NGT+ + N L+ +
Sbjct: 643 -----FDVQRDHIML----LENLKRMLRENGTIVFSNNKRNFKMDEAGLEKAG--LKAKN 691
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
+ +++ P+ R + N
Sbjct: 692 ISKQTLPLDFARNKHIHNCW 711
>gi|238919293|ref|YP_002932808.1| 23S rRNA m(2)G2445 methyltransferase [Edwardsiella ictaluri 93-146]
gi|238868862|gb|ACR68573.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 705
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + ++ L DLIF DPP R + + D D D
Sbjct: 590 HRLVQADCLNYLHHCED-KFDLIFIDPP----TFSNSKRMEGT-FDVQRDHLDLMRDLA- 642
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
R+L+P GT+ + L + + ++
Sbjct: 643 -------------RILRPGGTIMFSNNKRGFKMDLAGLAQRG--LQAQEITDRTLSADFA 687
Query: 141 RGRRFQNAH 149
R R+ N
Sbjct: 688 RNRQIHNCW 696
>gi|327461993|gb|EGF08322.1| hypothetical protein HMPREF9394_0656 [Streptococcus sanguinis
SK1057]
gi|327490059|gb|EGF21847.1| hypothetical protein HMPREF9395_0586 [Streptococcus sanguinis
SK1058]
Length = 440
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 4 KNSLAINENQNSIFEWKD--KIIKGNSISVL-EKLPAKSVDLIFADPPYNLQLNGQLYR 59
N + + + I + + + G++ ++ E + SVDLI PPY +
Sbjct: 228 NNVIIEDLEKIGIDNFSNHNLLYLGDTRKLIFENVDDNSVDLIITSPPYLNSRDYTDSY 286
>gi|307131473|ref|YP_003883489.1| 23S rRNA m2G2445 methyltransferase [Dickeya dadantii 3937]
gi|306529002|gb|ADM98932.1| 23S rRNA m2G2445 methyltransferase [Dickeya dadantii 3937]
Length = 707
Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I + ++ + + + DLIF DPP R D S F
Sbjct: 592 HRLIHADCLAWMRE-THEQFDLIFIDPP----TFSNSKRMDES-----------FDVQRD 635
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+P G + +
Sbjct: 636 HLMLM----TQLKRILRPGGIIMFSNNKR 660
>gi|157826175|ref|YP_001493895.1| DNA modification methylase-like protein [Rickettsia akari str.
Hartford]
gi|157800133|gb|ABV75387.1| DNA modification methylase-like protein [Rickettsia akari str.
Hartford]
Length = 44
Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
HP P AL+ RI+ S+ I+LDPF GS T+ A+KL
Sbjct: 2 NNDHPRPFPNALIKRIISSTNAK--IVLDPFIGSVTTAIAAQKLN 44
>gi|77461575|ref|YP_351082.1| SAM-dependent methyltransferase [Pseudomonas fluorescens Pf0-1]
gi|77385578|gb|ABA77091.1| SAM-dependent methyltransferase [Pseudomonas fluorescens Pf0-1]
Length = 398
Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 11 ENQNSIFEWKDKI--IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
E ++ + DK+ I+G+ L++L + D+I ADPP ++ L +
Sbjct: 260 ERNAALNGFADKMTCIEGDVFEALKELKASEERFDVIVADPPAFIKRKKDLKNGEG 315
>gi|225377660|ref|ZP_03754881.1| hypothetical protein ROSEINA2194_03311 [Roseburia inulinivorans DSM
16841]
gi|225210524|gb|EEG92878.1| hypothetical protein ROSEINA2194_03311 [Roseburia inulinivorans DSM
16841]
Length = 232
Score = 42.7 bits (99), Expect = 0.083, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
+ L KP ++ +++ + DIILD F GS T+ + R FI +++
Sbjct: 58 NKYLFDFPKPVEVIKQLVSQVSNTDDIILDFFSGSATTAHAVMQLNAEDGGNRRFILVQL 117
>gi|118575763|ref|YP_875506.1| transcriptional activator, adenine-specific DNA methyltransferase
[Cenarchaeum symbiosum A]
gi|118194284|gb|ABK77202.1| transcriptional activator, adenine-specific DNA methyltransferase
[Cenarchaeum symbiosum A]
Length = 216
Score = 42.7 bits (99), Expect = 0.085, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 26/191 (13%)
Query: 29 ISVL-EKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
+L +KLP + D+I+ADPP YN +L D D + S ++ T
Sbjct: 25 REILYQKLPNRKFDIIYADPPWDYNGKLQY--------------DKTDLYVSTSSFKYPT 70
Query: 86 RAWLLACRRVLKPNGTLW-VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
+K + ++ + + +Q W N +
Sbjct: 71 MKTEKMMEIPIKKIASSNSLLFLWATSPHLEQAIQLGKAWGFEYRTVAFVWDKMNHNPGK 130
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLH 204
+ ++ L K + + S + G ER+
Sbjct: 131 YTLSNCELCLLFKHGKIPTPRGARNVRQLITVPRSEHSRKPVQAMQGIERM--------F 182
Query: 205 PTQKPEALLSR 215
P QK L +R
Sbjct: 183 PFQKKIELFAR 193
>gi|3211755|gb|AAC23743.1| unknown [Streptococcus pneumoniae]
Length = 92
Score = 42.7 bits (99), Expect = 0.087, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 33/91 (36%)
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
L C+RVLK +G+++V I +L N+ + + + +
Sbjct: 1 MSVRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNSKKG 60
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDALKAAN 175
N H+ + + S S K T + N
Sbjct: 61 LLNNHQNIYFYSKSKDFKFNTIFTEYSSTTN 91
>gi|319896777|ref|YP_004134971.1| methyltransferase [Haemophilus influenzae F3031]
gi|317432280|emb|CBY80632.1| predicted methyltransferase [Haemophilus influenzae F3031]
Length = 711
Score = 42.7 bits (99), Expect = 0.088, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N I + K+I+ + + LEK + DL+F DPP S + +SWD
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLVFVDPP------------TFSNSKRMEESWD 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +RVL NGT+ + L+ L + + K
Sbjct: 640 VQRDH-------VKLMRNLKRVLSNNGTIVFSNNKRGFKMNLVALEELG--LSAVEISHK 690
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 691 TLPLDFERNKQIHNCW 706
>gi|150399897|ref|YP_001323664.1| putative RNA methylase [Methanococcus vannielii SB]
gi|150012600|gb|ABR55052.1| putative RNA methylase [Methanococcus vannielii SB]
Length = 364
Score = 42.7 bits (99), Expect = 0.088, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ 56
N+ +++ SI +W K I + L+ L + +D + DPPY + + +
Sbjct: 262 NTYDLSKKTISIKKWNAKNI----LDYLKSLNIEKIDAVVTDPPYGISTSKK 309
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 204 HPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP L +R +V+ + DI+LDPF G+G A + + IG ++ + ++ A
Sbjct: 199 HPGCIMPKL-ARCMVNLSRINENDILLDPFCGTGGFLIEAGLIGCNVIGSDIDEQMVNGA 257
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
+ + ++ ++ K+ + + L + + ++T+
Sbjct: 258 ILNLNTY----DLSKKTISIKKWNAKNILDYLKSLNIEKIDAVVTDPP 301
>gi|307254640|ref|ZP_07536470.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306862405|gb|EFM94369.1| Type III restriction-modification system methyltransferase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
Length = 480
Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
L+ + KP +LS + T DIILD F GSG++ +
Sbjct: 233 LKELMNATVFNNPKPLPMLSDFIRWFTGRADIILDFFSGSGSTAHAILETN 283
>gi|115955266|ref|XP_001190641.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 540
Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 57/202 (28%), Gaps = 13/202 (6%)
Query: 84 FTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R+ L + +G+ + V + R V + +
Sbjct: 113 MNRSVLSRSAIEVWAHGSTYSEVCAGLDAVPRDEMEKYCKEDVSFCFKVHTFGKQLSSAA 172
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE---DVQMRSDWLIPICSGSERLRNK 198
H L + ++ D R I G +RL ++
Sbjct: 173 KLDTMKDHLPLKGPVKMRDPDQVFYIFEDYGVQPNQAPDKPHRIFVGRWISDGQKRLAHR 232
Query: 199 DGEKLHPTQKPEALLSRILVSSTK-----PGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
K ++ + + + T GD++LDPF G+G+ A G ++
Sbjct: 233 YSVKTRHFIGNTSMDALLSLVMTNQAGVREGDLVLDPFVGTGSLLVAAAHFGGYVSGCDI 292
Query: 254 KQDYIDIATKRIASVQPLGNIE 275
+I R S + E
Sbjct: 293 N---YNIIHGRGKSSRAQPKTE 311
>gi|304558626|gb|ADM41290.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Edwardsiella tarda
FL6-60]
Length = 663
Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + +S L DLIF DPP R + + D D D
Sbjct: 548 HRLVQADCLSYLHHCED-KFDLIFIDPP----TFSNSKRMEGT-FDVQRDHLDLMRDLA- 600
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
R+L+P GT+ +
Sbjct: 601 -------------RILRPGGTIMFSNNKR 616
>gi|269138613|ref|YP_003295313.1| putative RNA methylase [Edwardsiella tarda EIB202]
gi|267984273|gb|ACY84102.1| putative RNA methylase [Edwardsiella tarda EIB202]
Length = 705
Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + +S L DLIF DPP R + + D D D
Sbjct: 590 HRLVQADCLSYLHHCED-KFDLIFIDPP----TFSNSKRMEGT-FDVQRDHLDLMRDLA- 642
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
R+L+P GT+ +
Sbjct: 643 -------------RILRPGGTIMFSNNKR 658
>gi|255316512|ref|ZP_05358095.1| restriction modification system DNA specificity subunit
[Clostridium difficile QCD-76w55]
Length = 282
Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 35/196 (17%)
Query: 14 NSIFEWKDKI-------IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
N+ + +KI I G+ + L++ DL+ +PP+ G+ + D
Sbjct: 104 NNELHYLNKICYPNVNTINGDCLEYLKEF-EGKFDLVIGNPPF-----GKSCKRDGFEFG 157
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
SS E+Y R LK G+L ++ +
Sbjct: 158 K--------SSLESYF------FELSLRALKEGGSLIMVLPDSILSSKKYFNLRKFTVDN 203
Query: 127 NDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN--------YDALKAANEDV 178
I+ S P F L K Y+ +D+ NE+
Sbjct: 204 FRIIQSISLPTTTFYFYGTSVKTSILHLKKKDCNNKDYSIFMGIVDKIGWDSKGNKNENE 263
Query: 179 QMRSDWLIPICSGSER 194
+ + E+
Sbjct: 264 LISAYHEFKEFCKIEK 279
>gi|121603803|ref|YP_981132.1| putative methyltransferase [Polaromonas naphthalenivorans CJ2]
gi|120592772|gb|ABM36211.1| putative methyltransferase [Polaromonas naphthalenivorans CJ2]
Length = 224
Score = 42.7 bits (99), Expect = 0.090, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
+I +G+ +S L++L A S+ L+ DPP++
Sbjct: 129 RIERGDGLSALKRLEAGSMQLVLIDPPFDSG 159
>gi|260888179|ref|ZP_05899442.1| putative DNA methylase [Selenomonas sputigena ATCC 35185]
gi|330838478|ref|YP_004413058.1| RNA methylase [Selenomonas sputigena ATCC 35185]
gi|260862013|gb|EEX76513.1| putative DNA methylase [Selenomonas sputigena ATCC 35185]
gi|329746242|gb|AEB99598.1| RNA methylase [Selenomonas sputigena ATCC 35185]
Length = 248
Score = 42.7 bits (99), Expect = 0.092, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 37/89 (41%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ S +R + + IL+ ++ D++LD F G GT+ AK L
Sbjct: 17 MTTHWSFPKRGNWATHDAKWRGNWSPYIPRNILLRYSEEKDLVLDQFAGGGTTLVEAKLL 76
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R+ IG+++ ++ ++I +
Sbjct: 77 NRNIIGVDVNDTALERCKEKIDFEHDGAD 105
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I KG++ + L+ +P S+DLI PPY D ++ + +
Sbjct: 110 IHKGDARN-LDFIPDGSIDLICTHPPY----------ADIIKYSEDIEADLSHLKVKDFL 158
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
A RV+K V+ + I D
Sbjct: 159 EEMNAVAAESYRVMKKGKFCVVLMGDTRQKGHMIPMSFQVMRIFED 204
>gi|297527192|ref|YP_003669216.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
gi|297256108|gb|ADI32317.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
Length = 337
Score = 42.7 bits (99), Expect = 0.093, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 209 PEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P L ++ ++ K G+++LDPF G+G+ A ++ IGIE+ I A + +
Sbjct: 171 PVRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWKLIHGARENLLH 230
Query: 268 V 268
Sbjct: 231 Y 231
>gi|229035116|ref|ZP_04189062.1| Modification methylase [Bacillus cereus AH1271]
gi|228728182|gb|EEL79212.1| Modification methylase [Bacillus cereus AH1271]
Length = 199
Score = 42.7 bits (99), Expect = 0.093, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 208 KPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
L+ R++ K ILDPF GSG++ A +L +G E+ ++ ++
Sbjct: 47 FSVELVKRLIKEQAKRSTGTILDPFSGSGSTLIGANELGYKGLGFEVNPFSYFLSKVKLE 106
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
+ L +T ++ + +L E I P L+ A + V
Sbjct: 107 NY------TLGEITLFKS---LFEQVLNEENGIFPMPNLSFADKVFNKEV--------QD 149
Query: 327 ELGSIHR 333
+L SI +
Sbjct: 150 KLMSIKK 156
>gi|218130522|ref|ZP_03459326.1| hypothetical protein BACEGG_02111 [Bacteroides eggerthii DSM 20697]
gi|217987308|gb|EEC53638.1| hypothetical protein BACEGG_02111 [Bacteroides eggerthii DSM 20697]
Length = 441
Score = 42.7 bits (99), Expect = 0.093, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 9/144 (6%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
P + + + + + D ++ + E L+ I
Sbjct: 18 KLPDYQRIIERLVSKYNVVDGSYYEGLVNFKTNLVVPKHKWYDYKQGYS----ELLVKHI 73
Query: 217 L-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG--- 272
+ + ILDPF G GT+ + IG ++ I A + P
Sbjct: 74 IDEAKPLKEHYILDPFCGVGTTNLTSVNRGYKTIGFDINPMAILTAKAKTHHYTPKEIAL 133
Query: 273 -NIELTVLTGKRTEPRVAFNLLVE 295
L T ++ + ++E
Sbjct: 134 IKKYLESFTLPDSKVEIEGGRVIE 157
>gi|75910556|ref|YP_324852.1| hypothetical protein Ava_4359 [Anabaena variabilis ATCC 29413]
gi|75704281|gb|ABA23957.1| hypothetical protein Ava_4359 [Anabaena variabilis ATCC 29413]
gi|311977232|gb|ADQ20491.1| M.AvrII [Anabaena variabilis UW]
Length = 425
Score = 42.7 bits (99), Expect = 0.093, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ PGD +LDPF G GT+ + S I E + DIA
Sbjct: 47 EACLSPGDAVLDPFGGLGTTPVQSLLDGFSCIVCEANPYFADIA 90
>gi|332796925|ref|YP_004458425.1| putative RNA methylase [Acidianus hospitalis W1]
gi|332694660|gb|AEE94127.1| putative RNA methylase [Acidianus hospitalis W1]
Length = 310
Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG-- 272
R+LV+ P ILDPF G G+ A L + IG ++ I+ +
Sbjct: 152 RLLVNLANPEKTILDPFAGVGSILIEASWLGYNCIGGDIDSKMIEKTKYNLKHFNYECQI 211
Query: 273 -NIELTVLTGKR 283
+++ L K
Sbjct: 212 IQEDISNLPIKE 223
Score = 39.6 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 5 NSLAINENQNSI--FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+S I + + ++ F ++ +II+ + IS L + SVD I DPPY
Sbjct: 191 DSKMIEKTKYNLKHFNYECQIIQED-ISNLP-IKENSVDAIVTDPPYG 236
>gi|219853285|ref|YP_002467717.1| methyltransferase DNA modification enzyme [Methanosphaerula
palustris E1-9c]
gi|219547544|gb|ACL17994.1| methyltransferase DNA modification enzyme [Methanosphaerula
palustris E1-9c]
Length = 410
Score = 42.7 bits (99), Expect = 0.095, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 30/83 (36%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
++ + +R + E + L + T+ G+ + DPF G GT+ A
Sbjct: 38 HYINEFWTSRQRQASTLHELSYRACFKPQLPGFFIRLLTREGETVYDPFSGRGTTAIEAG 97
Query: 243 KLRRSFIGIEMKQDYIDIATKRI 265
L R I ++ + R
Sbjct: 98 LLGRQVIANDINPLSAILTAPRF 120
>gi|302520723|ref|ZP_07273065.1| DNA methylase [Streptomyces sp. SPB78]
gi|302429618|gb|EFL01434.1| DNA methylase [Streptomyces sp. SPB78]
Length = 701
Score = 42.7 bits (99), Expect = 0.100, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 35 LPAKSVDLIFADPPY--NLQLN-----GQLYRPDHSLVDAVTDS-------WDKFSSFEA 80
LP +S+DLI DPPY N+ + +A + + +
Sbjct: 474 LPNESIDLIVTDPPYMDNVHYAELADFFHAWLRGMRPYEAYAATATTRRTGEVQHADPME 533
Query: 81 YDAFTRAWLLACRRVLKPNG 100
+ A C RVLKP G
Sbjct: 534 FGKAIEAVWSECARVLKPGG 553
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
G ++LDPF GSG +G A KL + ++ + + +
Sbjct: 78 KGAVVLDPFSGSGVTGVEALKLGARAVCFDINPVATLVQRQAMQPWN 124
>gi|332092513|gb|EGI97586.1| hypothetical protein SB521682_1270 [Shigella boydii 5216-82]
Length = 702
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+I+ + ++ L + + DLIF DPP D F
Sbjct: 591 HSLIQADCLAWLRE-ANEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ GT+ +
Sbjct: 635 HLALM----KDLKRLLRAGGTIMFSNNKR 659
>gi|156740428|ref|YP_001430557.1| cytosine-specific DNA-methyltransferase [Roseiflexus castenholzii
DSM 13941]
gi|156231756|gb|ABU56539.1| site-specific DNA-methyltransferase (cytosine-specific)
[Roseiflexus castenholzii DSM 13941]
Length = 476
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
+ G+ + VL +L + D I PPY + +
Sbjct: 272 LYDGSCLQVLPRLSDNAYDAIMTSPPYCNRYDYTRTY 308
>gi|237755447|ref|ZP_04584071.1| modification methylase MjaII [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692379|gb|EEP61363.1| modification methylase MjaII [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 152
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSST- 221
YD N+ + +W + SE R K ++HP + L+ L S T
Sbjct: 56 KEYYDKTYKINQQKEENINWSLSFAEYSEAERTKHVHRIHPYKGKFIPQLVEYFLDSHTD 115
Query: 222 --------KPGDIILDPFFGSGTSGAVAKKLRRSF 248
K GDI+LDPF GSGT+ A +L
Sbjct: 116 SFKKEVYFKAGDIVLDPFCGSGTTLVQANELGIHA 150
>gi|119511076|ref|ZP_01630195.1| ParB-like nuclease [Nodularia spumigena CCY9414]
gi|119464247|gb|EAW45165.1| ParB-like nuclease [Nodularia spumigena CCY9414]
Length = 442
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 24/67 (35%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E +++ ++ T + ++ PF G+G +++ R + + R
Sbjct: 372 EGIVNYLIHLYTNQNNFVIAPFMGNGEILIACERMGRICFIGDENPQLVHRGIMRWQKWT 431
Query: 270 PLGNIEL 276
++
Sbjct: 432 GKLPQKI 438
>gi|323140969|ref|ZP_08075881.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
12067]
gi|322414572|gb|EFY05379.1| DNA (cytosine-5-)-methyltransferase [Phascolarctobacterium sp. YIT
12067]
Length = 418
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 15/187 (8%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
D F L + G V S R + + + + N
Sbjct: 53 DLFLMTALRYKKENSSKKGRWDVFWSNADRPTMRYDILGFTPETGQWRNSKEKAYIAISN 112
Query: 140 FRGRRFQNAHE-TLIWASPSPKAKGYTFNYDALKAANEDVQM-----RSDWLIPICSGSE 193
++ + + + T+ + + N VQ + + E
Sbjct: 113 YQTYVEEYSDKMTIEEYAEKYGITEFVRRIPNGTGKNGGVQHWVAPSDTALRTNNWTDIE 172
Query: 194 RLRNKDGEKL-HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------R 246
+ +L K + L++ ++ DIILD F GS T+ +L R
Sbjct: 173 VSQIGKEIQLPFDNPKSKQLIAELIRLCGCKNDIILDFFSGSATTAHAVMQLNAEDGGKR 232
Query: 247 SFIGIEM 253
FI +++
Sbjct: 233 KFIMVQL 239
>gi|118575789|ref|YP_875532.1| transcriptional activator, adenine-specific DNA methyltransferase
[Cenarchaeum symbiosum A]
gi|118194310|gb|ABK77228.1| transcriptional activator, adenine-specific DNA methyltransferase
[Cenarchaeum symbiosum A]
Length = 216
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 26/190 (13%)
Query: 30 SVL-EKLPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+L +KLP + D+I+ADPP YN +L D D + S ++ T
Sbjct: 26 EILYQKLPNRKFDIIYADPPWDYNGKLQY--------------DKTDLYVSTSSFKYPTM 71
Query: 87 AWLLACRRVLKPNGTLW-VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRF 145
+K + ++ + + +Q W N ++
Sbjct: 72 KTKKMMEIPIKKIASSNSLLFLWATSPHLEQAIQLGKAWGFEYRTVAFVWDKMNHNPGKY 131
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHP 205
++ L K + + S + G ER+ P
Sbjct: 132 TLSNCELCLLFKHGKIPTPRGARNVRQLITIPRTEHSRKPVQAMQGIERM--------FP 183
Query: 206 TQKPEALLSR 215
QK L +R
Sbjct: 184 FQKKIELFAR 193
>gi|156095713|ref|XP_001613891.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148802765|gb|EDL44164.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 576
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 20/187 (10%)
Query: 39 SVDLIFADPP---------YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL 89
D+I DPP YNL L ++ ++ L + + DKF S E + +
Sbjct: 320 KFDVILIDPPWKEYYDRKIYNLDLLSSMHIENYDLNGDINNDRDKFWSLEDLASLEIEKI 379
Query: 90 LACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH 149
L ++ ++ +L + DI W K+N + ++ N
Sbjct: 380 ADVPSFL------FLWCGITHLEDARVLLNKWGYRRCEDICWLKTNIKETNKKVKYLNET 433
Query: 150 ETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP 209
A++ + + + ++ + + + E ++ KP
Sbjct: 434 NNENSFLQRTTEHCLVGIKGAVRRSYDIHFIHANLDTDVI-----IAEETDENIYNNNKP 488
Query: 210 EALLSRI 216
E L I
Sbjct: 489 EELYKII 495
>gi|28571505|ref|NP_649471.3| CG1074 [Drosophila melanogaster]
gi|15292467|gb|AAK93502.1| SD03208p [Drosophila melanogaster]
gi|28381132|gb|AAF52125.2| CG1074 [Drosophila melanogaster]
gi|220956194|gb|ACL90640.1| CG1074-PA [synthetic construct]
Length = 488
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 39 SVDLIFADPPYNLQLNGQLYRPDHS-LVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
S D I DPPY ++ + S + +DS + S Y + L R
Sbjct: 300 SFDCIITDPPYGIREATEKVEKKASVKANTRSDSMVHYPSTSHYSLQSLYGDLLEFSARH 359
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
LK G L +H+ ML
Sbjct: 360 LKLGGRLVCWIPFHSEDYDPKMLPQHQH 387
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+ + GD++ DPF G+G+ A K +G ++ + A R
Sbjct: 209 QAMVRNGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVH-ARCR 254
>gi|157273385|gb|ABV27284.1| DNA methyltransferase [Candidatus Chloracidobacterium thermophilum]
Length = 412
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++ ++ + ILDPF G+GT+ A R ++ + + +IA
Sbjct: 38 LKIVEELIANHPNAQ-RILDPFCGTGTTALCAACYGRESTTADINPFLVWLTQTKIARYP 96
Query: 270 PLGNIELTVLTGK 282
+ +
Sbjct: 97 AETIEAVQSACQE 109
>gi|111219757|ref|YP_710551.1| hypothetical protein FRAAL0261 [Frankia alni ACN14a]
gi|111147289|emb|CAJ58938.1| hypothetical protein; putative HSDR_N domain [Frankia alni ACN14a]
Length = 417
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 292 LLVERGLIQPGQILT-NAQG-NISATVCADGTLISGTELGSIH------RVGAKVSGSET 343
LV+ G+++PG LT + +G +A V DG +I G + S+ +V G
Sbjct: 317 DLVKAGMVRPGSTLTGDYRGGRRTAEVLPDGKVIFGGDELSLSAAGAAAKVDIAGPGLPE 376
Query: 344 CN----GWNFWYFEK--LGELHSINTLRILV 368
GW FW G+L S+ LR +
Sbjct: 377 TARQTDGWEFWKAPDPVNGQLVSLKKLRRDL 407
>gi|94152672|ref|YP_582074.1| hypothetical protein Rmet_6265 [Cupriavidus metallidurans CH34]
Length = 80
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P + ++PGD+++DPF G+ +G A++L R + IAT+ I
Sbjct: 3 PTDIPDFFTRFLSQPGDLVVDPFGGTIRTGLAAERLGRRW-----------IATEWILQY 51
Query: 269 QPLGNIELTVLTGKRTEP 286
G + P
Sbjct: 52 ARGAAELFRQFDGFQMHP 69
>gi|167622227|ref|YP_001672521.1| putative methyltransferase [Shewanella halifaxensis HAW-EB4]
gi|167352249|gb|ABZ74862.1| putative methyltransferase [Shewanella halifaxensis HAW-EB4]
Length = 206
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+IKG+S+++L P++ DL+F DPP+
Sbjct: 104 VIKGDSLALLANKPSEGFDLVFIDPPF 130
>gi|157963792|ref|YP_001503826.1| putative methyltransferase [Shewanella pealeana ATCC 700345]
gi|157848792|gb|ABV89291.1| putative methyltransferase [Shewanella pealeana ATCC 700345]
Length = 209
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+IKG+S+++L P++ DL+F DPP+
Sbjct: 104 VIKGDSLALLANKPSEGFDLVFIDPPF 130
>gi|330445996|ref|ZP_08309648.1| 23S rRNA m2G2445 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490187|dbj|GAA04145.1| 23S rRNA m2G2445 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 712
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+ + + I+ + + L+++ + DLIF DPP R S
Sbjct: 592 NNQVGSQHEFIQADCLQWLQEV-DDTFDLIFIDPP----TFSNSKRMKQS---------- 636
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F + +R+L+P G + + + L L N + K
Sbjct: 637 -FDIQRDHIMLM----ENLKRMLRPEGQIVFSNNKRHFKMDLDKLNELGLHAKN--ISDK 689
Query: 134 SNPMPNFRGRRFQNAH 149
+ PM + ++ N
Sbjct: 690 TLPMDFAKNKQIHNCW 705
>gi|10798461|emb|CAC12781.1| DNA methyltransferase C1 [Bacillus firmus]
Length = 380
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 3/121 (2%)
Query: 170 ALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST-KPGDIIL 228
+ AN+ + + +GS + +P + + IL + G +L
Sbjct: 5 NMNIANDIKEKLHEIDWDF-TGSSATKGIHSIHPYPAKFIPEIPRTILDTLPLPEGTAVL 63
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
DPF GSGT+ A+ +G+++ I+ + ++ P + + R +
Sbjct: 64 DPFCGSGTTLVEAQSKGYPTVGVDLNPIACLISKVKTNTL-PSDFVNIAEECIGRAKKNN 122
Query: 289 A 289
Sbjct: 123 N 123
>gi|169786877|ref|YP_001705690.1| putative methyltransferase cytosine (N4) specific (C2-like)
[Acinetobacter baumannii SDF]
gi|169150794|emb|CAP02988.1| putative methyltransferase Cytosine (N4) specific (C2-like)
[Acinetobacter baumannii]
Length = 494
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
K GD +LDPF GSGTS + L G ++ + IA ++ +++
Sbjct: 115 KKGDHVLDPFCGSGTSLIESAHLGIHANGTDINPLAVYIANAKLEALK 162
>gi|289626534|ref|ZP_06459488.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|330869771|gb|EGH04480.1| DNA methylase N-4/N-6 [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 621
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 35 LPAKSVDLIFADPPYN-------LQLNGQLYRPDHS-LVDAVTDSWDKFSSFEAYDAFTR 86
L SVD IF DPP+ L +L+ + V S + Y +
Sbjct: 416 LEEGSVDYIFTDPPFGDYIPYAELNQINELWLGRTTDRAREVIVSPSQSKGVAKYGSMMG 475
Query: 87 AWLLACRRVLKPNGTLWV--IGSYHNIFR 113
RVLK +G V ++ N++R
Sbjct: 476 DVFQEMARVLKTDGMATVVFHSAHTNVWR 504
>gi|145631205|ref|ZP_01786979.1| predicted methyltransferase [Haemophilus influenzae R3021]
gi|144983303|gb|EDJ90794.1| predicted methyltransferase [Haemophilus influenzae R3021]
Length = 657
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N I + K+I+ + + LEK + DLIFADPP
Sbjct: 593 NDIEGKQHKLIQADCLQWLEKC-DRQFDLIFADPP 626
>gi|167760230|ref|ZP_02432357.1| hypothetical protein CLOSCI_02603 [Clostridium scindens ATCC 35704]
gi|167662113|gb|EDS06243.1| hypothetical protein CLOSCI_02603 [Clostridium scindens ATCC 35704]
Length = 783
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR--SFIGIEMKQDYIDIATKR 264
K + ++ + T +++DPF GSGT A R F E + A R
Sbjct: 43 KSRTIARTLIENLTDENGLVVDPFGGSGTFAYAALDAGRHVRFNEWEPYAYKLSTAPFR 101
>gi|148656375|ref|YP_001276580.1| hypothetical protein RoseRS_2251 [Roseiflexus sp. RS-1]
gi|148568485|gb|ABQ90630.1| hypothetical protein RoseRS_2251 [Roseiflexus sp. RS-1]
Length = 393
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 198 KDGEKLHPTQKPEALLSRI----LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
K +HP P + I + + T PG +LDP GSGT VA + IG ++
Sbjct: 2 KPPRPIHP--FPARMAPHIALKAIEALT-PGSTVLDPMMGSGTVVRVAAEAGHRAIGRDV 58
Query: 254 KQDYIDIATKRIASVQPLG 272
+ + A + P
Sbjct: 59 DPLAVLMTRVWTAPINPQQ 77
>gi|222869694|gb|EEF06825.1| ABC transporter family protein [Populus trichocarpa]
Length = 425
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + ++ L + + DLIF DPP
Sbjct: 23 HRLIQADCLAWLRE-ANEQFDLIFIDPP 49
>gi|212224690|ref|YP_002307926.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
gi|212009647|gb|ACJ17029.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
Length = 282
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
+II G++ V+++ S D+I DPP
Sbjct: 180 QIIHGDAFEVVKRFNDGSFDVIIHDPP 206
>gi|197116728|ref|YP_002137155.1| hypothetical protein Gbem_0328 [Geobacter bemidjiensis Bem]
gi|197086088|gb|ACH37359.1| hypothetical protein Gbem_0328 [Geobacter bemidjiensis Bem]
Length = 383
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR------------PDHSLVDAVT 69
K+I+ ++ ++ +L +SVDL+ PPY ++ + +
Sbjct: 234 KVIQQDARNM--ELEDESVDLVVTSPPYAGVIDYTHANRLLYLWMGWPMGEERADEIGAR 291
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
++ ++ E Y + R RVLK +
Sbjct: 292 YRRNRKNAVEEYLSDMRLCRDQIHRVLKKGSYCAI 326
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
++ ++ G+++ DPF GSGT+ A KL R + + + I +++
Sbjct: 44 LIQVLSRTGEVVFDPFGGSGTTAIEALKLGRFAVVSDRISACVQITEAKLS 94
>gi|301162992|emb|CBW22540.1| putative modification methylase [Bacteroides fragilis 638R]
Length = 424
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD---IILDPFFGSGTSGA 239
+GSE+ +P + P + ++ + + G +I D F G GT
Sbjct: 16 PVDEYWNTGSEKECRMHKIHAYPAKFPAFITTKAIEFVKRRGGEVNLIADIFCGCGTVAY 75
Query: 240 VAKKLRRSFIGIEMKQDYIDIA 261
KK F G ++ IA
Sbjct: 76 ETKKNGIDFWGCDINPVATLIA 97
>gi|282882842|ref|ZP_06291447.1| DNA methylase N-4/N-6 [Peptoniphilus lacrimalis 315-B]
gi|300814098|ref|ZP_07094381.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|281297253|gb|EFA89744.1| DNA methylase N-4/N-6 [Peptoniphilus lacrimalis 315-B]
gi|300511755|gb|EFK38972.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 248
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 38/89 (42%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ S ER + + I++ +K D+ILD F G GT+ AK L
Sbjct: 17 MTTHWSFPERGDWATHDAKWRGNWSPYIPRNIILRYSKEKDLILDQFAGGGTTLVEAKLL 76
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQPLGN 273
+R+ IG+++ ++ ++I +
Sbjct: 77 KRNIIGLDVNDVALNRCREKIDFEHEGAD 105
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 19/131 (14%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
KG++ + L+ + S+DLI PPY N+ + + D S + +
Sbjct: 112 KGDARN-LDFISDNSIDLICTHPPYANIIKYSENIKEDLSQLK-----------INDFLD 159
Query: 84 FTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNF-----WILNDIVWRKSNPM 137
+ RVLK + V +G + + + + K
Sbjct: 160 EMKKVASESYRVLKKDKFCAVLMGDTRKNGHMIPLSFYVMQVFENAGFKMKEMIIKEQHN 219
Query: 138 PNFRGRRFQNA 148
G N+
Sbjct: 220 CRATGFWKTNS 230
>gi|115727536|ref|XP_782141.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
purpuratus]
Length = 468
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 10/186 (5%)
Query: 84 FTRAWLLACRRVLKPNGTLW--VIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
R+ L + +G+ + V + R V + +
Sbjct: 41 MNRSVLSRSAIEVWAHGSTYSEVCAGLDAVPRDEMEKYCKEDVSFCFKVHTFGKQLSSAA 100
Query: 142 GRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE---DVQMRSDWLIPICSGSERLRNK 198
H L + ++ D R I G +RL ++
Sbjct: 101 KLDTMKDHLPLKGPVKMRDPDQVFYIFEDYGVQPNQAPDKPHRIFVGRWISDGQKRLAHR 160
Query: 199 DGEKLHPTQKPEALLSRILVSSTK-----PGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
K ++ + + + T GD++LDPF G+G+ A G ++
Sbjct: 161 YSVKTRHFIGNTSMDALLSLVMTNQAGVREGDLVLDPFVGTGSLLVAAAHFGGYVSGCDI 220
Query: 254 KQDYID 259
+ I
Sbjct: 221 NYNIIH 226
>gi|327482706|gb|AEA86016.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
Length = 398
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
++G++ +++L + D++ DPP ++ L +
Sbjct: 275 VEGDAFEAMKELKNAEERFDVVITDPPAFIKRKKDLKNGE 314
>gi|157692688|ref|YP_001487150.1| hypothetical protein BPUM_1920 [Bacillus pumilus SAFR-032]
gi|157681446|gb|ABV62590.1| hypothetical protein BPUM_1920 [Bacillus pumilus SAFR-032]
Length = 262
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADP 47
+I G+SI L+K P S D+++ DP
Sbjct: 158 VISGDSIEQLKKYPDGSFDVVYFDP 182
>gi|146284322|ref|YP_001174475.1| hypothetical protein PST_4010 [Pseudomonas stutzeri A1501]
gi|145572527|gb|ABP81633.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
Length = 398
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
++G++ +++L + D++ DPP ++ L +
Sbjct: 275 VEGDAFEAMKELKNAEERFDVVITDPPAFIKRKKDLKNGE 314
>gi|163848981|ref|YP_001637025.1| hypothetical protein Caur_3451 [Chloroflexus aurantiacus J-10-fl]
gi|222526938|ref|YP_002571409.1| hypothetical protein Chy400_3716 [Chloroflexus sp. Y-400-fl]
gi|163670270|gb|ABY36636.1| hypothetical protein Caur_3451 [Chloroflexus aurantiacus J-10-fl]
gi|222450817|gb|ACM55083.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
Length = 413
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
Q L+ +L S G +LDP GSGT A L GI++ +A R+
Sbjct: 42 QFSPQLVEVLLQSYAPQGGTVLDPCMGSGTVLYEAAHLGSPVYGIDVNPAAYVLA--RLY 99
Query: 267 SVQ 269
Sbjct: 100 ECC 102
>gi|329934859|ref|ZP_08284900.1| hypothetical protein SGM_0612 [Streptomyces griseoaurantiacus M045]
gi|329305681|gb|EGG49537.1| hypothetical protein SGM_0612 [Streptomyces griseoaurantiacus M045]
Length = 699
Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 287 RVAFNLLVERGLIQPGQILTNAQGNIS--ATVCADGTLISGTELGSIHRVGAKVSGSETC 344
R+ + L++ GLI G +LT A A V G + ++ A G+
Sbjct: 613 RIKLSELLDAGLISAGTVLTPAWEEYEQAAVVDEQGRIRLDEQIHDTPSGAANAVGA-GT 671
Query: 345 NGWNFWYFEKLGELHSINTLRILV 368
NGW FW + ++ LR +
Sbjct: 672 NGWTFWLADTPDGQVTLADLRAAL 695
>gi|109900242|ref|YP_663497.1| putative methyltransferase [Pseudoalteromonas atlantica T6c]
gi|109702523|gb|ABG42443.1| 16S rRNA m(2)G-966 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 194
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+++ G+S+ L +L DLIF DPP+N
Sbjct: 109 QVLCGDSLGYLSQLND-KFDLIFLDPPFN 136
>gi|330812398|ref|YP_004356860.1| hypothetical protein PSEBR_a5353 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380506|gb|AEA71856.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 398
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ L +
Sbjct: 275 IEGDVFEALKELKASEERFDVIVADPPAFIKRKKDLKNGEG 315
>gi|75675011|ref|YP_317432.1| hypothetical protein Nwi_0815 [Nitrobacter winogradskyi Nb-255]
gi|74419881|gb|ABA04080.1| hypothetical protein Nwi_0815 [Nitrobacter winogradskyi Nb-255]
Length = 308
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
L G +LDPF G G VA +L R ++GIE++ + ++
Sbjct: 83 LCEIAYRWFCPQGGTVLDPFAGGSVRGIVASRLGRRYVGIELRHEQVEA 131
>gi|70733157|ref|YP_262930.1| hypothetical protein PFL_5872 [Pseudomonas fluorescens Pf-5]
gi|68347456|gb|AAY95062.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length = 398
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ L +
Sbjct: 275 IEGDVFEALKELKASEERFDVIVADPPAFIKRKKDLKNGEG 315
>gi|282163635|ref|YP_003356020.1| hypothetical protein MCP_0965 [Methanocella paludicola SANAE]
gi|282155949|dbj|BAI61037.1| hypothetical protein [Methanocella paludicola SANAE]
Length = 508
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+KP +++++ +++K DI++D F GSG + + R+FIG ++ I I I
Sbjct: 18 ARKPWRPINKLITTNSKERDIVVDLFVGSGVTALESISQNRNFIGYDLNPIAIFITENTI 77
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 18/125 (14%)
Query: 35 LPAKSVDLIFADPPY-------------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
L +SVD I DPPY N L + +++ V D K +
Sbjct: 300 LEDESVDYIITDPPYGEAIQYSELSLVWNSWLGLNYDNREEVIINPVQDKGKK-----EF 354
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
L RR+LK + +L I + + N
Sbjct: 355 IKLLEMSLKEGRRILKNGKKFTICFHNKEFDIWQDVLSVFKRNGFKLININIESTVSNSY 414
Query: 142 GRRFQ 146
+
Sbjct: 415 NINWS 419
>gi|126466128|ref|YP_001041237.1| RNA methylase [Staphylothermus marinus F1]
gi|126014951|gb|ABN70329.1| putative RNA methylase [Staphylothermus marinus F1]
Length = 337
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 209 PEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P L ++ ++ K G+++LDPF G+G+ A ++ IGIE+ + + A + +
Sbjct: 171 PIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENLLH 230
Query: 268 V 268
Sbjct: 231 Y 231
>gi|330965059|gb|EGH65319.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|330957099|gb|EGH57359.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|330954994|gb|EGH55254.1| SAM-dependent methyltransferase [Pseudomonas syringae Cit 7]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAAEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|330944165|gb|EGH46282.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. pisi str.
1704B]
Length = 344
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAAEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|330883391|gb|EGH17540.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 190
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 78 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 118
>gi|330874682|gb|EGH08831.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|330872375|gb|EGH06524.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 366
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|312963653|ref|ZP_07778134.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
gi|311282162|gb|EFQ60762.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKASEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|289648508|ref|ZP_06479851.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
str. 2250]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|271500188|ref|YP_003333213.1| putative RNA methylase [Dickeya dadantii Ech586]
gi|270343743|gb|ACZ76508.1| putative RNA methylase [Dickeya dadantii Ech586]
Length = 707
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I + ++ + + + DLIF DPP
Sbjct: 592 HRLIHADCLAWMRE-THEQFDLIFIDPP 618
>gi|257482977|ref|ZP_05637018.1| hypothetical protein PsyrptA_06961 [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|330891351|gb|EGH24012.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. mori str.
301020]
gi|330985922|gb|EGH84025.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011782|gb|EGH91838.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|251789291|ref|YP_003004012.1| 23S rRNA m(2)G2445 methyltransferase [Dickeya zeae Ech1591]
gi|247537912|gb|ACT06533.1| putative RNA methylase [Dickeya zeae Ech1591]
Length = 707
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I + ++ + + + DLIF DPP
Sbjct: 592 HRLIHADCLAWMRE-THEQFDLIFIDPP 618
>gi|237802338|ref|ZP_04590799.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331025195|gb|EGI05251.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|229593165|ref|YP_002875284.1| hypothetical protein PFLU5795 [Pseudomonas fluorescens SBW25]
gi|229365031|emb|CAY53198.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKASEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|213967814|ref|ZP_03395961.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|301382451|ref|ZP_07230869.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
Max13]
gi|302061157|ref|ZP_07252698.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
K40]
gi|302132050|ref|ZP_07258040.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213927590|gb|EEB61138.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|28867642|ref|NP_790261.1| hypothetical protein PSPTO_0412 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28850877|gb|AAO53956.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|331014955|gb|EGH95011.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|71736452|ref|YP_276895.1| hypothetical protein PSPPH_4795 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557005|gb|AAZ36216.1| conserved hypothetical protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326358|gb|EFW82411.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320331651|gb|EFW87589.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|66047988|ref|YP_237829.1| hypothetical protein Psyr_4764 [Pseudomonas syringae pv. syringae
B728a]
gi|289672466|ref|ZP_06493356.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae
FF5]
gi|302188128|ref|ZP_07264801.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae
642]
gi|63258695|gb|AAY39791.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
B728a]
gi|330970967|gb|EGH71033.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aceris
str. M302273PT]
gi|330980022|gb|EGH78288.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 398
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 275 IEGDVFEALKELKAAEERFDVIVADPPAFIKRKKDMKNGEG 315
>gi|303388946|ref|XP_003072706.1| putative methyltransferase [Encephalitozoon intestinalis ATCC
50506]
gi|303301848|gb|ADM11346.1| putative methyltransferase [Encephalitozoon intestinalis ATCC
50506]
Length = 363
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 214 SRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
R+++ GD++ DPF G G A K ++ I+
Sbjct: 196 ERMILVKKFQVGDVVCDPFCGVGPVSLAALKKGCRVYSNDLNSHAIE 242
>gi|283833768|ref|ZP_06353509.1| putative methylase [Citrobacter youngae ATCC 29220]
gi|291070429|gb|EFE08538.1| putative methylase [Citrobacter youngae ATCC 29220]
Length = 702
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + + L + DLIF DPP D F
Sbjct: 591 HRLIQADCLGWLRD-ANEQFDLIFIDPP---------------TFSNSKRMEDSFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A R +R+L+ GT+ +
Sbjct: 635 HLALMRD----LKRLLRKEGTIMFSNNKR 659
>gi|330902934|gb|EGH33877.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 177
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ + +
Sbjct: 70 IEGDVFEALKELKAAEERFDVIVADPPAFIKRKKDMKNGEG 110
>gi|57505835|ref|ZP_00371760.1| type IIS restriction enzyme M2 protein (mod) [Campylobacter
upsaliensis RM3195]
gi|57015865|gb|EAL52654.1| type IIS restriction enzyme M2 protein (mod) [Campylobacter
upsaliensis RM3195]
Length = 118
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
+ I S + ++ SVDLI PPY + + AV F
Sbjct: 17 MNTIFYK-SSQNMSEVSECSVDLIITSPPYFNIKDYSKDGYQNVKHSAVAGGGGGFR 72
>gi|313667114|gb|ADR73006.1| M.BspHI [Bacillus sp. H(2010)]
Length = 411
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 204 HPTQKPEALLSRILVSS--TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY---- 257
+ + P L +I+ ILD F GSGT+ AK + +G+++
Sbjct: 52 YYGKFPSVLAGKIIDLFPPKDKNSYILDNFCGSGTTLVEAKLRGINSVGLDINWISALAS 111
Query: 258 -IDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
+ I ++ L + L + ++P +
Sbjct: 112 NVKTKHININKIRNLHDSILFLYKQYVSKPFDSN 145
>gi|289624668|ref|ZP_06457622.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|330871120|gb|EGH05829.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 398
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPDH 62
I+G+ L++L + D+I ADPP ++ +
Sbjct: 275 IEGDVFEALKELKAGEERFDVIVADPPAFIKRKKDMKNGKG 315
>gi|219121879|ref|XP_002181285.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407271|gb|EEC47208.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 460
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 21/103 (20%)
Query: 23 IIKGNSISVL------EKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFS 76
++ G+S + L + + + DLI DPPY ++ + S + +T + + F
Sbjct: 338 LLHGDSTNELMREEAKKAIGNDAFDLIITDPPYGIR--------ESSNYNTLTPAEELFQ 389
Query: 77 SFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
S RR+LK G L + + +L
Sbjct: 390 SIAKDRD-------LGRRLLKKGGRLVCFVPCNEDENLEDVLP 425
>gi|161529283|ref|YP_001583109.1| RNA methylase [Nitrosopumilus maritimus SCM1]
gi|160340584|gb|ABX13671.1| putative RNA methylase [Nitrosopumilus maritimus SCM1]
Length = 315
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 209 PEALLSRILVSSTK-----PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
P L ++ + G+ + DPF G+GT+ A+ + IG++ + ++I K
Sbjct: 159 PHELDWKLTRAMINLVGLKKGETVCDPFCGTGTTLLEAESMGIHGIGLDFDEKMVEITKK 218
Query: 264 RIAS 267
+
Sbjct: 219 NLKE 222
>gi|317474029|ref|ZP_07933308.1| hypothetical protein HMPREF1016_00286 [Bacteroides eggerthii
1_2_48FAA]
gi|316909871|gb|EFV31546.1| hypothetical protein HMPREF1016_00286 [Bacteroides eggerthii
1_2_48FAA]
Length = 441
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 9/144 (6%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
P + + + + + D ++ + E L+ I
Sbjct: 18 KLPDYQRIIERLVSKYNVVDGSYYEGLVNFKANLVVPKHKWYDYKQGYS----ELLVKHI 73
Query: 217 L-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG--- 272
+ + ILDPF G GT+ + IG ++ I A + P
Sbjct: 74 IDEAKPLKEHYILDPFCGVGTTNLTSVNRGYKTIGFDVNPMAILTAKAKTHHYTPKEIAL 133
Query: 273 -NIELTVLTGKRTEPRVAFNLLVE 295
L T ++ + ++E
Sbjct: 134 IKKYLESFTLPDSKVEIEGGRVIE 157
>gi|313898499|ref|ZP_07832036.1| restriction endonuclease [Clostridium sp. HGF2]
gi|312956881|gb|EFR38512.1| restriction endonuclease [Clostridium sp. HGF2]
Length = 783
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
K A+ ++ + T +I+DPF GSGT A R I E + +++
Sbjct: 43 KSRAIARTLIENLTDENAVIVDPFGGSGTFAYAALDAGRHVIFNEWEPYAYEMS 96
>gi|75760811|ref|ZP_00740828.1| Cytosine (N4) specific methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228905390|ref|ZP_04069345.1| Modification methylase [Bacillus thuringiensis IBL 4222]
gi|74491697|gb|EAO54896.1| Cytosine (N4) specific methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228854210|gb|EEM98913.1| Modification methylase [Bacillus thuringiensis IBL 4222]
Length = 430
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 18/127 (14%)
Query: 208 KPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
L+ R++ K ILDPF GSG++ A +L +G E+ ++ ++
Sbjct: 47 FSVELVKRLIKEQAKRSTGTILDPFSGSGSTLIGANELGYKGLGFEVNPFSYFLSKVKLE 106
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
+ L K +L E I P L+ A + V
Sbjct: 107 NYTLGEITLFKSLFEK---------VLNEENGIFPMPNLSFADKVFNKEV--------QD 149
Query: 327 ELGSIHR 333
+L SI +
Sbjct: 150 KLMSIKK 156
>gi|297572116|ref|YP_003697890.1| site-specific DNA-methyltransferase (adenine-specific)
[Arcanobacterium haemolyticum DSM 20595]
gi|296932463|gb|ADH93271.1| site-specific DNA-methyltransferase (adenine-specific)
[Arcanobacterium haemolyticum DSM 20595]
Length = 134
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 8 AINENQNSIFEW---KDKIIKGNSISVLEKLPA---KSVDLIFADP 47
+ ++ + +W ++ I+G+++ VL+ L + +I+ +P
Sbjct: 77 TLMPDKENSVDWDATQNVFIEGDNLEVLKVLQKHYYGQIKMIYIEP 122
>gi|254372755|ref|ZP_04988244.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570482|gb|EDN36136.1| conserved hypothetical protein [Francisella novicida GA99-3549]
Length = 717
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NKLDIKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSTQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|116334202|ref|YP_795729.1| adenine specific DNA methylase Mod [Lactobacillus brevis ATCC 367]
gi|116099549|gb|ABJ64698.1| Adenine specific DNA methylase Mod [Lactobacillus brevis ATCC 367]
Length = 283
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKK 243
+ G++RL D + + KP +L+ ++ P ILD F GS T+ +
Sbjct: 1 MTNEDGAKRLVELDLKDMFTNPKPTSLIKYLINIVGHEHPDITILDFFAGSSTTADAVMQ 60
Query: 244 ------LRRSFIGIEM 253
R FI +++
Sbjct: 61 LNAEDGGNRKFIMVQL 76
>gi|328676888|gb|AEB27758.1| hypothetical protein FNFX1_0810 [Francisella cf. novicida Fx1]
Length = 717
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NKLDIKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|238897866|ref|YP_002923545.1| 23S rRNA m(2)G2445 methyltransferase, UPF0020 domain protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465623|gb|ACQ67397.1| 23S rRNA m(2)G2445 methyltransferase, UPF0020 domain protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 715
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N N + + + I+ + + L+ + D IF DPP
Sbjct: 583 NLNTNGLTGSRHRFIQEDCFTWLQHQKDEQFDFIFLDPP 621
>gi|28210764|ref|NP_781708.1| caffeoyl-CoA O-methyltransferase [Clostridium tetani E88]
gi|28203202|gb|AAO35645.1| caffeoyl-coA O-methyltransferase [Clostridium tetani E88]
Length = 215
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
+LA + S +E K KI++G+ + VL K+ + DLIF D
Sbjct: 94 ALANENIKKSGYEEKIKIVEGDCLEVLSKI-DEKFDLIFMD 133
>gi|91791677|ref|YP_561328.1| DNA methylase N-4/N-6 [Shewanella denitrificans OS217]
gi|91713679|gb|ABE53605.1| DNA methylase N-4/N-6 [Shewanella denitrificans OS217]
Length = 599
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYN-------------LQLNGQLYRPDHSLVDAVT 69
+I +S L LP +D +F DPP+ L L R +V
Sbjct: 387 VINNSSSEKL-SLPDGCIDYVFTDPPFGDYIPYAELNQINELWLGSTTNRTQEIIVSKA- 444
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ E Y + RVLKP G + V+ +
Sbjct: 445 ----QGKGVEQYSQMMASVFSEIERVLKPEGLVTVVFHSAKSNIWQAL 488
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+PT+ ++ + S TKPG +LD F GSGT+G A + G+
Sbjct: 31 YPTKISPEAIAVFIASHTKPGGTVLDTFGGSGTTGLAALLCDKPTEGM 78
>gi|193214865|ref|YP_001996064.1| DNA methylase N-4/N-6 domain-containing protein [Chloroherpeton
thalassium ATCC 35110]
gi|193088342|gb|ACF13617.1| DNA methylase N-4/N-6 domain protein [Chloroherpeton thalassium
ATCC 35110]
Length = 525
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 16/190 (8%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ G + E + + + + N +
Sbjct: 31 IQYGRVKQYKNNGNNLVSKEELIRYYKSINGRRENDWKERLGDDLNWALSFDWLKETDTT 90
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRIL---------VSSTKPGDIILDPFFGSGTSGAV 240
RL G+ L+ L GDI+LDPF GSGT+
Sbjct: 91 KHVHRLHPYKGK------FIPQLVEYFLDSHVDDFKKEIYFNAGDIVLDPFSGSGTTMVQ 144
Query: 241 AKKLRRSFIGIEMKQDYIDIATKRIASVQPLG-NIELTVLTGKRTEPRVAFNLLVERGLI 299
A +L +G+++ I+ ++ V EL +T + N L +
Sbjct: 145 AGELGLHAVGVDISAFNALISNVKVKDVDFEDLQAELRKITQSLRKFISESNHLQFENEL 204
Query: 300 QPGQILTNAQ 309
+ N +
Sbjct: 205 LTELNIFNKK 214
>gi|157146361|ref|YP_001453680.1| 23S rRNA m(2)G2445 methyltransferase [Citrobacter koseri ATCC
BAA-895]
gi|238686820|sp|A8AID1|RLML_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|157083566|gb|ABV13244.1| hypothetical protein CKO_02120 [Citrobacter koseri ATCC BAA-895]
Length = 702
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + + L + + DLIF DPP R D S F
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP----TFSNSKRMDES-----------FDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+ GT+ +
Sbjct: 635 HLVLM----KDLKRLLRKGGTIMFSNNKR 659
>gi|254374212|ref|ZP_04989694.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151571932|gb|EDN37586.1| conserved hypothetical protein [Francisella novicida GA99-3548]
Length = 718
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NKLDIKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSTQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|302392143|ref|YP_003827963.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
5501]
gi|302204220|gb|ADL12898.1| DNA methylase N-4/N-6 domain protein [Acetohalobium arabaticum DSM
5501]
Length = 868
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 32 LEKLPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
L +P S D ++ DPP+ N + L +++ +A+ +S + Y+
Sbjct: 471 LSMIPENSFDYMYIDPPFGSNLMYSELNFLTDSWLQVIENNNSEAIINSV-QNKDLVDYN 529
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
R+LKPN W+ ++N
Sbjct: 530 NLMEQSFKEFYRILKPN--RWITIEFNNS 556
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ T+ P + ++ TKPGDI+ D F GSG +G A+
Sbjct: 88 YVTKVPYKAIMYFIMHYTKPGDIVFDGFAGSGMTGIAAQMC 128
>gi|118497390|ref|YP_898440.1| 23S rRNA m(2)G2445 methyltransferase [Francisella tularensis subsp.
novicida U112]
gi|195536081|ref|ZP_03079088.1| ribosomal L29e protein family protein, putative [Francisella
tularensis subsp. novicida FTE]
gi|208779185|ref|ZP_03246531.1| ribosomal L29e protein family, putative [Francisella novicida FTG]
gi|229560158|sp|A0Q621|RLML_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|118423296|gb|ABK89686.1| conserved protein of unknown function [Francisella novicida U112]
gi|194372558|gb|EDX27269.1| ribosomal L29e protein family protein, putative [Francisella
tularensis subsp. novicida FTE]
gi|208744985|gb|EDZ91283.1| ribosomal L29e protein family, putative [Francisella novicida FTG]
Length = 718
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 21/133 (15%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + K I+ + IS L+ D+IF DPP S + D D
Sbjct: 601 NKLDIKKHSFIQADCISWLKTNKD-KFDVIFLDPP------------TFSNSKRMDDILD 647
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
E + LK +G L+ +Y +L+ N + D +
Sbjct: 648 IQRDHE-------LLINLAMDSLKKDGILYFSNNYRRFKMSPQILEKFNCENI-DKICLS 699
Query: 134 SNPMPNFRGRRFQ 146
+ + N
Sbjct: 700 RDFLSNKNIHNCW 712
>gi|52424802|ref|YP_087939.1| 23S rRNA m(2)G2445 methyltransferase [Mannheimia succiniciproducens
MBEL55E]
gi|81825561|sp|Q65UK6|RLML_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|52306854|gb|AAU37354.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 715
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + K+I+ + + L A+ DLIF DPP S + DSWD
Sbjct: 597 NEADGKQHKLIQADCLQWLANC-AQQFDLIFVDPP------------TFSNSKRMEDSWD 643
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ +R+L+PNGT+ + L L + + + K
Sbjct: 644 VQRDH-------IKLMGNLKRILRPNGTIVFSNNKRGFKMDFEGLTRLG--LKAEEISAK 694
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ R ++ N
Sbjct: 695 TLPLDFERNKQIHNCW 710
>gi|332980762|ref|YP_004462203.1| DNA methylase N-4/N-6 domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332698440|gb|AEE95381.1| DNA methylase N-4/N-6 domain protein [Mahella australiensis 50-1
BON]
Length = 534
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 15/134 (11%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ + G + +E + K + + N +
Sbjct: 39 IQYGKIKKISQNGSVLVSRYELENYYESYYGRKEVDWKNKLGEDLNWALSFEHVKEAETT 98
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTK---------PGDIILDPFFGSGTSGAV 240
RL G+ L+ L T GDI+LDPF GSGT+
Sbjct: 99 KHVHRLHPYKGK------FIPQLVEYFLDDHTDDFKKETYFRKGDIVLDPFCGSGTTLVQ 152
Query: 241 AKKLRRSFIGIEMK 254
+L IGI++
Sbjct: 153 CNELDMHAIGIDVS 166
>gi|78044003|ref|YP_360292.1| putative methyltransferase [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996118|gb|ABB15017.1| putative methyltransferase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 184
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLN 54
I G+ +L + + DLIF DPPY
Sbjct: 96 ILGDIFKILPHI-NEKFDLIFLDPPYGYGFE 125
>gi|198454454|ref|XP_001359596.2| GA10534 [Drosophila pseudoobscura pseudoobscura]
gi|198132801|gb|EAL28746.2| GA10534 [Drosophila pseudoobscura pseudoobscura]
Length = 460
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIASVQPLGNIE 275
+ + GD++ DPF G+G+ A K +G ++ + + RI+ +
Sbjct: 181 QAMVREGDLVFDPFVGTGSLLVSAAKFGGYVLGADIDYMMVHAQCRPSRISQRVRERDES 240
Query: 276 LTVL 279
+
Sbjct: 241 IRAN 244
>gi|118576019|ref|YP_875762.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194540|gb|ABK77458.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 422
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDP 230
+ + W ER++ + + L+ L K +I DP
Sbjct: 35 CMSLTKKYDEELCWKEDSLPQKERMKYTHTIHPYFGKFVPHLVRYFLERHLKNAKLICDP 94
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
F GSGT+ + +G+++ + ++ R+ + +
Sbjct: 95 FMGSGTTLIESNLAGIPSVGMDISR--FNVMMCRVKTRKYDM 134
>gi|237738446|ref|ZP_04568927.1| LOW QUALITY PROTEIN: type III restriction-modification system
methylation subunit [Fusobacterium mortiferum ATCC 9817]
gi|229420326|gb|EEO35373.1| LOW QUALITY PROTEIN: type III restriction-modification system
methylation subunit [Fusobacterium mortiferum ATCC 9817]
Length = 487
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 43/167 (25%), Gaps = 11/167 (6%)
Query: 98 PNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIW--- 154
P+GT + + + N G + L
Sbjct: 135 PHGTKTARPNLFYPIYYDKNKNEFFLEAKENTIQLFPKKHKNDDGTWMWSKPRFLKDSKD 194
Query: 155 -ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN-KDGEKLHPTQKPEAL 212
K + + +G++ L + + + KP
Sbjct: 195 LYLKDEKIYIKHYFNEEEDQNRYQRNKSFLDEFQNSTGTKVLNSLFEYSGIFDNPKPIKF 254
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
L L T IILD F GS T+ + R +I +++
Sbjct: 255 LEWCLNLCTSSSSIILDFFSGSATTAHAVMQLNAEDGGNRKYIMVQL 301
>gi|150009100|ref|YP_001303843.1| putative methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|255015721|ref|ZP_05287847.1| putative methyltransferase [Bacteroides sp. 2_1_7]
gi|149937524|gb|ABR44221.1| putative methyltransferase [Parabacteroides distasonis ATCC 8503]
Length = 185
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNL 51
+I+G+ L P +S D IFADPPY L
Sbjct: 96 LIRGDVFRYLNSAPKQSFDFIFADPPYAL 124
>gi|256841660|ref|ZP_05547166.1| RsmD family RNA methyltransferase [Parabacteroides sp. D13]
gi|262384000|ref|ZP_06077136.1| RsmD family RNA methyltransferase [Bacteroides sp. 2_1_33B]
gi|298377145|ref|ZP_06987099.1| RNA methyltransferase, RsmD family [Bacteroides sp. 3_1_19]
gi|301310878|ref|ZP_07216807.1| RNA methyltransferase, RsmD family [Bacteroides sp. 20_3]
gi|256736554|gb|EEU49882.1| RsmD family RNA methyltransferase [Parabacteroides sp. D13]
gi|262294898|gb|EEY82830.1| RsmD family RNA methyltransferase [Bacteroides sp. 2_1_33B]
gi|298266129|gb|EFI07788.1| RNA methyltransferase, RsmD family [Bacteroides sp. 3_1_19]
gi|300830941|gb|EFK61582.1| RNA methyltransferase, RsmD family [Bacteroides sp. 20_3]
Length = 185
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNL 51
+I+G+ L P +S D IFADPPY L
Sbjct: 96 LIRGDVFRYLNSAPKQSFDFIFADPPYAL 124
>gi|145630147|ref|ZP_01785929.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae R3021]
gi|144984428|gb|EDJ91851.1| putative type III restriction/modification system modification
methylase [Haemophilus influenzae R3021]
Length = 108
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 42 LIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+I+ DPPY +P + ++ F + L R +L PNGT
Sbjct: 1 MIYIDPPYY----FNETKPTDTFNYNSNFK------LSSWLLFMKNRLEVARELLAPNGT 50
Query: 102 LWVIGSYHNIFRIGTMLQNLNFW--ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
+ V + + ++ + + +W+ ++ + + + + +
Sbjct: 51 ILVSINESGNAYLKILMNEIFNKENFVETFIWKNTDNPDSLSKKSRASVEYIIAFEKK 108
>gi|2865603|gb|AAC97183.1| SapI M1 methyltransferase [Saccharopolyspora sp.]
Length = 376
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
KP +L ++ + + G +LDP G GT A R I + + ++A
Sbjct: 45 KP-SLAHWLVKTFSPEGGTVLDPMGGVGTIAFEAALTGRVGITNDKSPLAATVTAGKLAP 103
Query: 268 VQPLGNIE 275
L E
Sbjct: 104 SSILEAEE 111
>gi|57640916|ref|YP_183394.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
kodakarensis KOD1]
gi|57159240|dbj|BAD85170.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
kodakarensis KOD1]
Length = 331
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 196 RNKDGEKLHPTQK--PEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
++ + K H P +L R+ LV+ TK ILDPF G+G A L G
Sbjct: 147 KDFEKRKAHHRPFFRPISLHPRVSRALVNLTKATREILDPFMGAGGILIEAGLLGLRVYG 206
Query: 251 IEMKQDYIDIATKRIASV 268
++++ + ++ A +
Sbjct: 207 VDIRPEMVEGAETNLKHY 224
>gi|172038696|ref|YP_001805197.1| hypothetical protein cce_3783 [Cyanothece sp. ATCC 51142]
gi|171700150|gb|ACB53131.1| hypothetical protein cce_3783 [Cyanothece sp. ATCC 51142]
Length = 355
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS 234
+ D + S + G K +P + P + + ++ T+P D+++D G
Sbjct: 133 DGDPKKFSWLRCGTFWYFSHCDPRFGIK-YPGRIPGQIPANLIHYFTEPNDLVVDLMAGG 191
Query: 235 GTSGAVAKKLRRSFIGIEM 253
G++ AK L R +G ++
Sbjct: 192 GSTLDAAKFLDRKCLGYDL 210
>gi|158520955|ref|YP_001528825.1| putative RNA methylase [Desulfococcus oleovorans Hxd3]
gi|158509781|gb|ABW66748.1| putative RNA methylase [Desulfococcus oleovorans Hxd3]
Length = 461
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 202 KLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HP ++ ++ KPGD +LDP GSGT A + + IGI+ +
Sbjct: 116 KFHP-----QMIKGLINIMGLKPGDTVLDPMMGSGTVLVEASLMGINSIGIDASPFCRFM 170
Query: 261 ATKRIASVQPLGNIELTVLTGKRT 284
A +I ++ + L +
Sbjct: 171 AQTKIDALTVPLSRAQKTLNNYKE 194
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS------ 77
++G++ + L K+VD I PPY+ ++ D ++ + D +
Sbjct: 308 MEGDARDL--PLDNKTVDGIIFSPPYSFAIDY--LGNDAFHLNYLGVEMDNLRNSMIGLR 363
Query: 78 -------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
FE Y L C RVL+P +I +N
Sbjct: 364 GKKLSEKFELYREDMEQVLSECSRVLRPARLCTIIVGTNN 403
>gi|261344264|ref|ZP_05971908.1| putative methylase [Providencia rustigianii DSM 4541]
gi|282567866|gb|EFB73401.1| putative methylase [Providencia rustigianii DSM 4541]
Length = 702
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + ++++ + +S L + DLIF DPP R D +
Sbjct: 583 NQLTGRQHRLMQADCLSWLAN-SDEQFDLIFIDPP----TFSNSKRMDGT---------- 627
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F + + +R+L+ GT+ + L L + + K
Sbjct: 628 -FDVQRDHVQL----ITHLKRMLRRGGTVMFSNNKRGFKMDMDALNELG--LKAQEITAK 680
Query: 134 SNPMPNFRGRRFQNAH 149
+ R R+ N
Sbjct: 681 TRSEDFARNRQIHNCW 696
>gi|327393365|dbj|BAK10787.1| N6-Adenine-specific DNA methylase YcbY [Pantoea ananatis AJ13355]
Length = 704
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
+++ + +S L + ++ DLIF DPP
Sbjct: 590 HRLLHADCLSWLNE-SDENFDLIFIDPP 616
>gi|15221909|ref|NP_175293.1| phosphoethanolamine N-methyltransferase 2, putative (NMT2)
[Arabidopsis thaliana]
gi|24212079|sp|Q944H0|PEAM2_ARATH RecName: Full=Phosphoethanolamine N-methyltransferase 2
gi|16226649|gb|AAL16223.1|AF428454_1 At1g48600/T1N15_20 [Arabidopsis thaliana]
gi|17380784|gb|AAL36222.1| putative phosphoethanolamine N-methyltransferase [Arabidopsis
thaliana]
gi|22136802|gb|AAM91745.1| putative phosphoethanolamine N-methyltransferase [Arabidopsis
thaliana]
gi|332194203|gb|AEE32324.1| putative phosphoethanolamine N-methyltransferase 2 [Arabidopsis
thaliana]
Length = 475
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 46/301 (15%), Positives = 89/301 (29%), Gaps = 38/301 (12%)
Query: 8 AINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
AI +N++ +K+ K + + S K+ S+DLIF
Sbjct: 71 AIQKNESVNGHYKNIKFMCADVTSPDLKIKDGSIDLIF---------------------- 108
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV--IGSYHNIFRIGTMLQNLNFW 124
+W + +KP G ++ + +
Sbjct: 109 ---SNWLLMYLSDKEVELMAER---MIGWVKPGGYIFFRESCFHQSGDSKRKSNPTHYRE 162
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAH---ETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ + G F+ + + + + K + + D +
Sbjct: 163 PRFYTKVFQECQTRDASGNSFELSMVGCKCIGAYVKNKKNQNQICWIWQKVSVENDKDFQ 222
Query: 182 S--DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS-GTSG 238
D + SG R GE T E + KPG +LD G G
Sbjct: 223 RFLDNVQYKSSGILRYERVFGEGYVSTGGFETTKEFVAKMDLKPGQKVLDVGCGIGGGDF 282
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
+A+ +GI++ + I A +R ++ +T P +F+++ R
Sbjct: 283 YMAENFDVHVVGIDLSVNMISFALERAIGLK-CSVEFEVADCTTKTYPDNSFDVIYSRDT 341
Query: 299 I 299
I
Sbjct: 342 I 342
>gi|269214105|ref|ZP_06158356.1| type III restriction-modification system EcoPI, modification
subunit [Neisseria cinerea ATCC 14685]
gi|269144487|gb|EEZ70905.1| type III restriction-modification system EcoPI, modification
subunit [Neisseria cinerea ATCC 14685]
Length = 455
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 193 ERLRN--KDGEKLHPTQKPEALLSRILVSSTKPGD------IILDPFFGSGTSGAVAKK- 243
E L+ + + KP L++ ++ S D +ILD F GSGT+ +
Sbjct: 202 EELKRLFEKERAIFDFSKPYNLVADLIQISESETDKDSKDYLILDFFSGSGTTAHAVMQL 261
Query: 244 -----LRRSFIGIEMKQDYIDIATKRIASVQ 269
R FI +++ ++ + + R A
Sbjct: 262 NAEDGGNRRFICVQLPEETDEKSEARKAGFN 292
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 11/145 (7%), Positives = 41/145 (28%), Gaps = 2/145 (1%)
Query: 84 FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGR 143
L + +L+ +G +++ + ++ + + + + + +
Sbjct: 1 MMLPRLHLAKTLLREDGVIFISIDDNEQAQLKLLCDEVFGAENFVAQFSREAIKGGSQSK 60
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAAN--EDVQMRSDWLIPICSGSERLRNKDGE 201
+ H+ ++ + + + +T N ++ + G+ R
Sbjct: 61 FVRETHDYILCYAKNIQYVEFTGFEKEELTLNLEDEKGKYAKGRELNKWGAGSRREDSPS 120
Query: 202 KLHPTQKPEALLSRILVSSTKPGDI 226
P P + + G
Sbjct: 121 MWFPIYSPYGDEIYPIRNDGSEGRW 145
>gi|22299487|ref|NP_682734.1| DNA modification methyltransferase [Thermosynechococcus elongatus
BP-1]
gi|22295670|dbj|BAC09496.1| DNA modification methyltransferase [Thermosynechococcus elongatus
BP-1]
Length = 416
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 209 PEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P L+ + G +ILDPF G+GT+ +K+ +G+E + +
Sbjct: 5 PPHLVRGYIEDFGLNEGSVILDPFCGTGTTLVESKRQGIPSLGMEANPFAHFATSVKTDW 64
Query: 268 VQPLG 272
Sbjct: 65 RVDPD 69
>gi|291616937|ref|YP_003519679.1| YcbY [Pantoea ananatis LMG 20103]
gi|291151967|gb|ADD76551.1| YcbY [Pantoea ananatis LMG 20103]
Length = 704
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
+++ + +S L + ++ DLIF DPP
Sbjct: 590 HRLLHADCLSWLNE-SDENFDLIFIDPP 616
>gi|195153234|ref|XP_002017534.1| GL21470 [Drosophila persimilis]
gi|194112591|gb|EDW34634.1| GL21470 [Drosophila persimilis]
Length = 486
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK--RIASVQPLGNIE 275
+ + GD++ DPF G+G+ A K +G ++ + + RI+ +
Sbjct: 207 QAMVREGDLVFDPFVGTGSLLVSAAKFGGYVLGADIDYMMVHAQCRPSRISQRVRERDES 266
Query: 276 LTVL 279
+
Sbjct: 267 IRAN 270
>gi|170079575|ref|YP_001736208.1| DNA methylase containing a Zn-ribbon module [Synechococcus sp. PCC
7002]
gi|169887244|gb|ACB00953.1| Predicted DNA methylase containing a Zn-ribbon module
[Synechococcus sp. PCC 7002]
Length = 1057
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 32/119 (26%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNG-------------------------QLYRPDH-- 62
L LP +S+D + DPPY + +L D
Sbjct: 609 DSLYHLPDQSIDAVVTDPPYYSTIQYAELSDFFYVWQKRILSDIFPELYYSELTDKDREA 668
Query: 63 ----SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
S A+ S + + Y+A + RVLK NG + V ++ + +
Sbjct: 669 VANPSRFRAMGISPKDLAD-QDYEAKMQMAFSEYYRVLKDNGVMTVQFNHKDSGAWDVL 726
>gi|42784652|ref|NP_981899.1| modification methylase, putative [Bacillus cereus ATCC 10987]
gi|42740584|gb|AAS44507.1| modification methylase, putative [Bacillus cereus ATCC 10987]
Length = 430
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 208 KPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
L+ R++ K ILDPF GSG++ A +L +G E+ ++ ++
Sbjct: 47 FSVELVKRLIKEQAKRSTGTILDPFSGSGSTLIGANELGYKGLGFEVNPFSYFLSKVKLE 106
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGT 326
+ L +T ++ + +L E I P L+ A + V
Sbjct: 107 NY------TLGEITLFKS---LFEQVLNEENGIFPMPNLSFADKVFNKEV--------QD 149
Query: 327 ELGSIHR 333
+L SI +
Sbjct: 150 KLMSIKK 156
>gi|159905188|ref|YP_001548850.1| putative RNA methylase [Methanococcus maripaludis C6]
gi|159886681|gb|ABX01618.1| putative RNA methylase [Methanococcus maripaludis C6]
Length = 351
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 204 HPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP L +R LV+ + K G+I+LDPF G+G A L IG ++ + + A
Sbjct: 185 HPGCIMPKL-ARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVKGA 243
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
+ + ++ V++ K+ + + L E G+ + I+T+
Sbjct: 244 ILNLNTY----DLSKQVISIKQNDAKNVSKYLEELGIEKIDGIVTDPP 287
>gi|306833755|ref|ZP_07466881.1| conserved hypothetical protein [Streptococcus bovis ATCC 700338]
gi|304424092|gb|EFM27232.1| conserved hypothetical protein [Streptococcus bovis ATCC 700338]
Length = 249
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADP 47
K ++I+ ++ L KS D+++ DP
Sbjct: 151 KTYCADNITYMKSLSDKSFDVVYCDP 176
>gi|289192930|ref|YP_003458871.1| putative RNA methylase [Methanocaldococcus sp. FS406-22]
gi|288939380|gb|ADC70135.1| putative RNA methylase [Methanocaldococcus sp. FS406-22]
Length = 351
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 5/137 (3%)
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHP-TQKPEALLSRILVSSTKPGDIILDPFF 232
+ + + + ++ R + HP P+ + + ++ K GDI+LDPF
Sbjct: 155 LEDSFFISNVLEMRDREYFQKNRPHLRKYFHPGCMLPKLARAMVNLARVKEGDIVLDPFC 214
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
G+G A + IG ++ + L V+ KR + +
Sbjct: 215 GTGGFLIEAGLIGAKLIGCDIDWRMASGTLINLEEYNLLDK----VIKVKRLDAKYVKKF 270
Query: 293 LVERGLIQPGQILTNAQ 309
L E + + I+T+
Sbjct: 271 LNELNIEKVDAIVTDPP 287
>gi|212709822|ref|ZP_03317950.1| hypothetical protein PROVALCAL_00870 [Providencia alcalifaciens DSM
30120]
gi|212687633|gb|EEB47161.1| hypothetical protein PROVALCAL_00870 [Providencia alcalifaciens DSM
30120]
Length = 702
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N + + ++++ + ++ L + DLIF DPP
Sbjct: 583 NQLTGRQHRLMQADCLNWLAN-ADEQFDLIFIDPP 616
>gi|38637986|ref|NP_942960.1| putative DNA methyltransferase [Ralstonia eutropha H16]
gi|32527324|gb|AAP86074.1| putative DNA methyltransferase [Ralstonia eutropha H16]
Length = 413
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
+P A+ T+PGD+++DPF G+ +G A++L R +I E Y
Sbjct: 335 AMQPTAIPDFFTRFLTEPGDLVVDPFGGTIRTGLAAERLGRRWIVTEWILQY 386
>gi|161614745|ref|YP_001588710.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|238687234|sp|A9N6Y0|RLML_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|161364109|gb|ABX67877.1| hypothetical protein SPAB_02497 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 702
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|222481471|ref|YP_002567707.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
49239]
gi|222454847|gb|ACM59110.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
49239]
Length = 453
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L + + GD+I DPF GSGT+ A+ + ++ + ++ A PL
Sbjct: 57 LSYYLDEGVIEEGDLIYDPFSGSGTTSVEARLHGLNAEANDINPFAVMLSE---AKATPL 113
Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQI 304
+L+ + + V G++
Sbjct: 114 ERNDLSDSRDFILQNLSSDLRDVREEYESEGEV 146
>gi|148377996|ref|YP_001256872.1| protoporphirogen oxidase HEMK [Mycoplasma agalactiae PG2]
gi|148292042|emb|CAL59434.1| Protoporphirogen oxidase HEMK [Mycoplasma agalactiae PG2]
Length = 240
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 5 NSLAINENQNSIFEWKD----KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
N + N+N +KD K+++ + ++ DLI ++PPY L+
Sbjct: 109 NEAIMQANENVALNFKDTEGIKVVQSDCFKDIK----GKFDLIVSNPPY---LDYDDKDV 161
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
D S V F+ + F L + L G L + +I R +
Sbjct: 162 DES-VKKFEPEIALFAKDSGWY-FYEKILNEAKIYLNVGGVLAFEINPKHIDRWKQI 216
>gi|109947284|ref|YP_664512.1| methyltransferase fragment 2 [Helicobacter acinonychis str. Sheeba]
gi|109714505|emb|CAJ99513.1| methyltransferase fragment 2 [Helicobacter acinonychis str. Sheeba]
Length = 186
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 204 HPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
KP L+ +L T DIILD F GSGT+G +L R G + +I
Sbjct: 28 FKNPKPVTLIINLLKMIKTDENDIILDFFAGSGTTGHAVLELNRQDGG---NRQFILATN 84
Query: 263 KRIASVQPLG 272
I + P G
Sbjct: 85 NEITEMNPNG 94
>gi|296242508|ref|YP_003649995.1| hypothetical protein Tagg_0770 [Thermosphaera aggregans DSM 11486]
gi|296095092|gb|ADG91043.1| protein of unknown function DUF1156 [Thermosphaera aggregans DSM
11486]
Length = 1003
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 32/123 (26%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+++ ++ S L KL + DLI DPPY D ++D
Sbjct: 535 RVLLDDATS-LSKLGDEKFDLIVTDPPY----------KDDVAYSELSD----------- 572
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
F WL +R L + + + +H+ + W S +
Sbjct: 573 --FYYVWL---KRALSDSSAVSLHPRFHS-----DAFFPGGVEVRTQWEWFSSREVSMNV 622
Query: 142 GRR 144
GR
Sbjct: 623 GRC 625
>gi|295099216|emb|CBK88305.1| Predicted O-methyltransferase [Eubacterium cylindroides T2-87]
Length = 193
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 3 QKNSLAINENQNSIFE--WKDKI--IKGNSISVLEKLPAKSVDLIFAD 46
++N I + + +I + ++++I I+G+++ V +LP + D IF D
Sbjct: 66 ERNPEMIEQAKINIKQSGYQNQITLIEGDALEV--ELPDQKFDCIFID 111
>gi|260890630|ref|ZP_05901893.1| putative type II R/M system [Leptotrichia hofstadii F0254]
gi|260859675|gb|EEX74175.1| putative type II R/M system [Leptotrichia hofstadii F0254]
Length = 126
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
+KP L +I+ +K GD++LDPF G G+ + A R+ I ++ I +
Sbjct: 33 KKPAKELRKIIKEYSKEGDLLLDPFSGYGSFASEAVLENRNVISNDLNPVSNFITECLLE 92
Query: 267 S 267
Sbjct: 93 E 93
>gi|293396737|ref|ZP_06641013.1| N6-adenine-specific DNA methytransferase [Serratia odorifera DSM
4582]
gi|291421001|gb|EFE94254.1| N6-adenine-specific DNA methytransferase [Serratia odorifera DSM
4582]
Length = 718
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + +S L + D+IF DPP R +++ F
Sbjct: 603 HRLIQADCLSWLHN-ADEQFDVIFIDPP----TFSNSKRMENT-----------FDVQRD 646
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ A +R+L+ NGT+ +
Sbjct: 647 HLALM----KDLKRLLRRNGTIMFSNNKR 671
>gi|204929971|ref|ZP_03220992.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204320965|gb|EDZ06166.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 702
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|161503860|ref|YP_001570972.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|229560170|sp|A9MHU0|RLML_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|160865207|gb|ABX21830.1| hypothetical protein SARI_01948 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 702
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|326622747|gb|EGE29092.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 702
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|168237113|ref|ZP_02662171.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194737689|ref|YP_002114061.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|238693667|sp|B4TRX1|RLML_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|194713191|gb|ACF92412.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197289800|gb|EDY29161.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 702
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|62179584|ref|YP_216001.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224584432|ref|YP_002638230.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|81309723|sp|Q57QU1|RLML_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|62127217|gb|AAX64920.1| putative N6-adenine-specific DNA methylase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|224468959|gb|ACN46789.1| hypothetical protein SPC_2688 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714052|gb|EFZ05623.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
Length = 702
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|16764420|ref|NP_460035.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56413942|ref|YP_151017.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|167993433|ref|ZP_02574527.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168243849|ref|ZP_02668781.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168264749|ref|ZP_02686722.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168467500|ref|ZP_02701337.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168821988|ref|ZP_02833988.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444574|ref|YP_002040264.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451155|ref|YP_002045063.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197248600|ref|YP_002145931.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197264036|ref|ZP_03164110.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362865|ref|YP_002142502.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198242133|ref|YP_002214994.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207856406|ref|YP_002243057.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|81821429|sp|Q5PGE3|RLML_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|81853742|sp|Q8ZQ73|RLML_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238689924|sp|B5BBL9|RLML_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238690029|sp|B5F1U5|RLML_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238690358|sp|B5FQZ1|RLML_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238690430|sp|B5QZF1|RLML_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238690621|sp|B4TDY8|RLML_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|238693591|sp|B4T1Z1|RLML_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|16419576|gb|AAL19994.1| putative N6-adenine-specific DNA methylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56128199|gb|AAV77705.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|194403237|gb|ACF63459.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409459|gb|ACF69678.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|195630073|gb|EDX48725.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197094342|emb|CAR59854.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197212303|gb|ACH49700.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197242291|gb|EDY24911.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197936649|gb|ACH73982.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205328551|gb|EDZ15315.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205337189|gb|EDZ23953.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205341529|gb|EDZ28293.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205346845|gb|EDZ33476.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206708209|emb|CAR32509.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|267992812|gb|ACY87697.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157605|emb|CBW17097.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312912052|dbj|BAJ36026.1| 23S rRNA methyltransferase L [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320085275|emb|CBY95059.1| UPF0020/UPF0064 protein ycbY [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321223678|gb|EFX48741.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129329|gb|ADX16759.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|332987955|gb|AEF06938.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 702
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|322806761|emb|CBZ04330.1| ribosomal RNA small subunit methyltransferase D [Clostridium
botulinum H04402 065]
Length = 185
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
+ L +N FE K ++ S LE+ +KS+ DLIF DPPY
Sbjct: 74 PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFASKSIVFDLIFIDPPY 123
>gi|261246278|emb|CBG24086.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 702
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|200389518|ref|ZP_03216129.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199601963|gb|EDZ00509.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 702
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|213646710|ref|ZP_03376763.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 702
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|196035235|ref|ZP_03102641.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
VrlL [Bacillus cereus W]
gi|195992299|gb|EDX56261.1| S-adenosyl-L-methionine-dependent methyltransferases family protein
VrlL [Bacillus cereus W]
Length = 931
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 146 QNAHETLIWASPSPKAKGYTFNYDALKAANEDVQ-MRSDWLIPICSGSERLRNKDGEKLH 204
+ A P+P ++ K N + P S +N H
Sbjct: 66 TLSDPPYYTACPNPWINKCIEEWEQDKVKNYNRNSNEEYHREPFASDVSEGKNDAVYNAH 125
Query: 205 P--TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
T+ P + L+ T PGDIILD F G+G +G +++
Sbjct: 126 SYHTKVPYKAIMHYLLHYTNPGDIILDGFSGTGMTGVASRRCG 168
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 35 LPAKSVDLIFADPPYNLQLNG---------QLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
+ SVD IF DPP+ L L + +A+ ++ + Y
Sbjct: 498 INENSVDYIFTDPPFGKNLMYSELNFLWECWLQLITDNKGEAIINNT-QLKGLGEYQRLM 556
Query: 86 RAWLLACRRVLKPNGTLWVIGS 107
+VLKP + V S
Sbjct: 557 EESFENYFKVLKPGRWMTVEFS 578
>gi|322616436|gb|EFY13345.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619686|gb|EFY16561.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622618|gb|EFY19463.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629767|gb|EFY26542.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632511|gb|EFY29257.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636994|gb|EFY33697.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641467|gb|EFY38105.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646067|gb|EFY42583.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649631|gb|EFY46062.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654068|gb|EFY50391.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658600|gb|EFY54862.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663457|gb|EFY59659.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670193|gb|EFY66333.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671429|gb|EFY67551.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676785|gb|EFY72852.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682709|gb|EFY78728.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686389|gb|EFY82371.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195118|gb|EFZ80300.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199800|gb|EFZ84889.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202793|gb|EFZ87829.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323209064|gb|EFZ94001.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323217976|gb|EGA02691.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222008|gb|EGA06395.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226581|gb|EGA10786.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229777|gb|EGA13900.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233002|gb|EGA17098.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240737|gb|EGA24779.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243053|gb|EGA27074.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249784|gb|EGA33686.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252744|gb|EGA36582.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323259157|gb|EGA42801.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259980|gb|EGA43608.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323268019|gb|EGA51498.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269867|gb|EGA53316.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 702
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|205352216|ref|YP_002226017.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|238690475|sp|B5R6B4|RLML_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|205271997|emb|CAR36841.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326627261|gb|EGE33604.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
Length = 702
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|170761383|ref|YP_001787809.1| putative methyltransferase [Clostridium botulinum A3 str. Loch
Maree]
gi|169408372|gb|ACA56783.1| RNA methyltransferase, RsmD family [Clostridium botulinum A3 str.
Loch Maree]
Length = 185
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
+ L +N FE K ++ + LE+ +KS+ DLIF DPPY
Sbjct: 74 PETYPLLRENIKNLKFEDLCKSFNMDAYTALEEFASKSIVFDLIFIDPPY 123
>gi|168233434|ref|ZP_02658492.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194469802|ref|ZP_03075786.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194456166|gb|EDX45005.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205332462|gb|EDZ19226.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 702
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|32263452|gb|AAP78480.1| M.AhdI [Aeromonas hydrophila]
Length = 532
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 209 PEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P+ ++ I+ + ++++DPF GSG A R+ G + + + + A R+
Sbjct: 270 PKEVIDFIICMMSPNVRELVVDPFCGSGHFLTSALDYVRNSHG-KADKLFHEFAFTRLHG 328
Query: 268 VQPLGNIELTVLTGKR 283
++ + +T R
Sbjct: 329 IEKSDRMVRIAMTDMR 344
>gi|327399468|ref|YP_004340337.1| hypothetical protein Hipma_1321 [Hippea maritima DSM 10411]
gi|327182097|gb|AEA34278.1| protein of unknown function Met10 [Hippea maritima DSM 10411]
Length = 380
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 5 NSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPP 48
++ + E S+ K+ KII G+ L+ ++ D+I DPP
Sbjct: 242 DACSKIETNCSLNGIKNYKIINGDVFDFLKN-ETETYDMIIIDPP 285
>gi|213615947|ref|ZP_03371773.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 461
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 350 HRLIQADCLGWLRE-ANEQFDLIFIDPP 376
>gi|16759942|ref|NP_455559.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142286|ref|NP_805628.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213162294|ref|ZP_03348004.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213857603|ref|ZP_03384574.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289826800|ref|ZP_06545735.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|81853307|sp|Q8Z7S6|RLML_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|25513135|pir||AH0625 conserved hypothetical protein STY1082 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502236|emb|CAD08187.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137916|gb|AAO69477.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 702
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 591 HRLIQADCLGWLRE-ANEQFDLIFIDPP 617
>gi|42571805|ref|NP_973993.1| phosphoethanolamine N-methyltransferase 2, putative (NMT2)
[Arabidopsis thaliana]
gi|332194202|gb|AEE32323.1| putative phosphoethanolamine N-methyltransferase 2 [Arabidopsis
thaliana]
Length = 491
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 46/301 (15%), Positives = 89/301 (29%), Gaps = 38/301 (12%)
Query: 8 AINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
AI +N++ +K+ K + + S K+ S+DLIF
Sbjct: 87 AIQKNESVNGHYKNIKFMCADVTSPDLKIKDGSIDLIF---------------------- 124
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV--IGSYHNIFRIGTMLQNLNFW 124
+W + +KP G ++ + +
Sbjct: 125 ---SNWLLMYLSDKEVELMAER---MIGWVKPGGYIFFRESCFHQSGDSKRKSNPTHYRE 178
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAH---ETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
+ + G F+ + + + + K + + D +
Sbjct: 179 PRFYTKVFQECQTRDASGNSFELSMVGCKCIGAYVKNKKNQNQICWIWQKVSVENDKDFQ 238
Query: 182 S--DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS-GTSG 238
D + SG R GE T E + KPG +LD G G
Sbjct: 239 RFLDNVQYKSSGILRYERVFGEGYVSTGGFETTKEFVAKMDLKPGQKVLDVGCGIGGGDF 298
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
+A+ +GI++ + I A +R ++ +T P +F+++ R
Sbjct: 299 YMAENFDVHVVGIDLSVNMISFALERAIGLK-CSVEFEVADCTTKTYPDNSFDVIYSRDT 357
Query: 299 I 299
I
Sbjct: 358 I 358
>gi|224436931|ref|ZP_03657912.1| adenine-specific methyltransferase [Helicobacter cinaedi CCUG
18818]
Length = 352
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTD--SWD 73
G+S+ +L+ +S+D+++ DPPYN Q L R D+ + V W
Sbjct: 211 FCGDSVKLLQSF-KESIDILYLDPPYN-QRQYAPNYHLLETLARYDNPSIKGVAGMREWG 268
Query: 74 KFSSF 78
K S
Sbjct: 269 KQKSL 273
>gi|124004762|ref|ZP_01689606.1| DNA methylase, putative [Microscilla marina ATCC 23134]
gi|123989885|gb|EAY29414.1| DNA methylase, putative [Microscilla marina ATCC 23134]
Length = 371
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ P ++ +K GD ILDPF G TS L R +GIE+
Sbjct: 26 YYAMFPVDFAFDVINKYSKRGDHILDPFAGRSTSIYAGGALGRHGLGIEINP 77
>gi|229889502|sp|A0KKK7|RLML_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
Length = 717
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N NS+ + K ++ + + L + DLIF DPP
Sbjct: 591 NMRLNSLVGREHKFVQADCLKWLSE-ADDQYDLIFIDPP 628
>gi|225390610|ref|ZP_03760334.1| hypothetical protein CLOSTASPAR_04365 [Clostridium asparagiforme
DSM 15981]
gi|225043328|gb|EEG53574.1| hypothetical protein CLOSTASPAR_04365 [Clostridium asparagiforme
DSM 15981]
Length = 425
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-------RPDHSLVDAVTDSWD 73
+ ++ +++K+ A DL++ DPPYN + Y R + V V D
Sbjct: 259 NVCYNEDTNELMKKIEA---DLVYIDPPYNSRQYCDAYHLLENVARWEKPQVHGVARKMD 315
Query: 74 KFSSFEAYDAFTRAWLLACRRVL-KPNGTLWVIGSYHNI 111
+ + Y L + +++ SY+N+
Sbjct: 316 RSALKSDY---CTTRAADAFEDLIRNTKARFILLSYNNM 351
>gi|117618670|ref|YP_856808.1| 23S rRNA m(2)G2445 methyltransferase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560077|gb|ABK37025.1| methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 720
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N NS+ + K ++ + + L + DLIF DPP
Sbjct: 594 NMRLNSLVGREHKFVQADCLKWLSE-ADDQYDLIFIDPP 631
>gi|110834940|ref|YP_693799.1| hypothetical protein ABO_2079 [Alcanivorax borkumensis SK2]
gi|110648051|emb|CAL17527.1| hypothetical protein ABO_2079 [Alcanivorax borkumensis SK2]
Length = 704
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 19/111 (17%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDHSLVD 66
++ G+S + +P KS+D + DPPY L + S D
Sbjct: 480 LVLNGDSSKL--SVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRAD 537
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
+ + + + + RVLK G + S+H+ G
Sbjct: 538 SSGEGEVQHKDPLVFSRQLSSVFSEACRVLKDTGV--LAFSFHHSRPEGWA 586
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
G ++LDPF GSGT+ A KL +G ++
Sbjct: 87 GKVVLDPFMGSGTTLGEAVKLGAKAVGCDINP 118
>gi|258545973|ref|ZP_05706207.1| probable methylation subunit, type III restriction-modification
system [Cardiobacterium hominis ATCC 15826]
gi|258518778|gb|EEV87637.1| probable methylation subunit, type III restriction-modification
system [Cardiobacterium hominis ATCC 15826]
Length = 393
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 1/118 (0%)
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPK-AKGYTFNYDALKAANEDVQMRSDWLIPI 188
++ + + + E + K G I
Sbjct: 29 IYPIDGNGIERKWTYARQSVENISHLLKVEKLKNGNYEIKKTRDKERYKTVWDDSKYIAG 88
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
GS+ L N G K K + ++ S+K D ILD F GSGT+ L R
Sbjct: 89 DYGSKILNNIIGSKKFDFPKSLYTVLDSILLSSKKYDTILDYFAGSGTTAHAVINLNR 146
>gi|240147217|ref|ZP_04745818.1| modification methylase XcyI [Roseburia intestinalis L1-82]
gi|257200594|gb|EEU98878.1| modification methylase XcyI [Roseburia intestinalis L1-82]
Length = 38
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
GSGT+G AK L R +IGIE+ +Y +A RI
Sbjct: 1 GSGTTGLAAKSLDRRYIGIELNAEYCALAGARI 33
>gi|220907289|ref|YP_002482600.1| hypothetical protein Cyan7425_1872 [Cyanothece sp. PCC 7425]
gi|219863900|gb|ACL44239.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
Length = 433
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 209 PEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
P L+ L +LDPF G+GT+ +K +GIE ++ ++
Sbjct: 34 PPHLVQDYLHKFGIGEDQQVLDPFCGTGTTVVECQKQGIPAVGIEANPMAHFASSTKLDW 93
Query: 268 VQPLGN 273
P N
Sbjct: 94 TPPPEN 99
Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
++ ++ +L L +++D + PPY + +
Sbjct: 223 RMYPNDARQILPILAPQTIDAVITSPPYPNEKDYTRT 259
>gi|159030020|emb|CAO90401.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 397
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ + + Q L+ IL +ILDPF GSGT A L G E+
Sbjct: 18 KTRANLFVWRGQFSPQLIETILSFYCPSNSVILDPFVGSGTVLLEASYLSLEAYGFEINP 77
Query: 256 DYIDIA 261
++
Sbjct: 78 AAYIMS 83
>gi|119501757|ref|XP_001267635.1| O-methyltransferase, putative [Neosartorya fischeri NRRL 181]
gi|119415801|gb|EAW25738.1| O-methyltransferase, putative [Neosartorya fischeri NRRL 181]
Length = 236
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFAD 46
++IKG+ + VL +L DLI+ D
Sbjct: 123 RVIKGDCLKVLHEL-EGQFDLIYID 146
>gi|297847128|ref|XP_002891445.1| hypothetical protein ARALYDRAFT_473996 [Arabidopsis lyrata subsp.
lyrata]
gi|297337287|gb|EFH67704.1| hypothetical protein ARALYDRAFT_473996 [Arabidopsis lyrata subsp.
lyrata]
Length = 491
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 46/301 (15%), Positives = 89/301 (29%), Gaps = 38/301 (12%)
Query: 8 AINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
AI +N++ +K+ K + + S K+ S+DLIF
Sbjct: 87 AIKKNESVNGHYKNIKFMCADVTSPDLKIADGSIDLIF---------------------- 124
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV--IGSYHNIFRIGTMLQNLNFW 124
+W + +KP G ++ + +
Sbjct: 125 ---SNWLLMYLSDKEVELMAER---MIGWIKPGGYIFFRESCFHQSGDSKRKSNPTHYRE 178
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAH---ETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181
K + G ++ + + + + K + + D +
Sbjct: 179 PRFYTKVFKECQTRDASGNSYELSMVGCKCIGAYVKNKKNQNQICWIWQKVSLENDKDFQ 238
Query: 182 S--DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS-GTSG 238
D + SG R GE T E + KPG +LD G G
Sbjct: 239 RFLDNVQYKSSGILRYERVFGEGYVSTGGFETTKEFVAKMDLKPGQKVLDVGCGIGGGDF 298
Query: 239 AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
+A+ +GI++ + I A +R ++ +T P +F+++ R
Sbjct: 299 YMAENFDVHVVGIDLSVNMISFALERAIGLK-CSVEFEVADCTTKTYPDNSFDVIYSRDT 357
Query: 299 I 299
I
Sbjct: 358 I 358
>gi|123187375|gb|ABM69264.1| M1.BmrI [Bacillus megaterium]
Length = 379
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R +P + + ++ + G ILDPF GSGT+ A+ S +G+++
Sbjct: 28 TRGIHSIHPYPAKFIPEIPRTLIETLPLPEGTSILDPFCGSGTTLVEAQNRGISTVGVDL 87
Query: 254 KQDYIDIA 261
I+
Sbjct: 88 NPIACLIS 95
>gi|158333917|ref|YP_001515089.1| DNA modification methyltransferase [Acaryochloris marina MBIC11017]
gi|158304158|gb|ABW25775.1| DNA modification methyltransferase, putative [Acaryochloris marina
MBIC11017]
Length = 426
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
++ + L +S+D + PPY + +
Sbjct: 224 YHQDARDLTRILQPESIDAVITSPPYPNEKDYTRT 258
Score = 36.2 bits (82), Expect = 7.9, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 17/96 (17%)
Query: 208 KPEALLS-RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG---------------- 250
P L+ I +LDPF G+GT+ AKK +G
Sbjct: 31 FPPHLVRTYINKFGLTEKSTLLDPFCGTGTTIVEAKKQGIPAVGTEATPMSWFASRTKTT 90
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEP 286
+ D + A +RI K+ P
Sbjct: 91 WTVDPDQVRRAAERICDRLATDITPKNTTHLKKLAP 126
>gi|168180623|ref|ZP_02615287.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
gi|226949847|ref|YP_002804938.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
gi|182668549|gb|EDT80528.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
gi|226841020|gb|ACO83686.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
Length = 185
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
+ L +N FE K ++ S LE+ +KS+ DLIF DPPY
Sbjct: 74 PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFASKSIVFDLIFIDPPY 123
>gi|73540043|ref|YP_294563.1| hypothetical protein Reut_A0337 [Ralstonia eutropha JMP134]
gi|72117456|gb|AAZ59719.1| Conserved hypothetical protein 95 [Ralstonia eutropha JMP134]
Length = 214
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 31/86 (36%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++++G++ ++ ++P S D+IF DPP+
Sbjct: 120 RVVQGDAFAIAAQMPDASFDVIFLDPPFA------------------------------- 148
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGS 107
+ + R L R+L+P G ++V
Sbjct: 149 EDWLRPALEHAARLLRPGGAVYVETD 174
>gi|213426921|ref|ZP_03359671.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
Length = 443
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 332 HRLIQADCLGWLRE-ANEQFDLIFIDPP 358
>gi|168182571|ref|ZP_02617235.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
gi|237795933|ref|YP_002863485.1| RsmD family RNA methyltransferase [Clostridium botulinum Ba4 str.
657]
gi|182674241|gb|EDT86202.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
gi|229261371|gb|ACQ52404.1| RNA methyltransferase, RsmD family [Clostridium botulinum Ba4 str.
657]
Length = 185
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
+ L +N FE K ++ S LE+ +KS+ DLIF DPPY
Sbjct: 74 PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFASKSIVFDLIFIDPPY 123
>gi|145590104|ref|YP_001156701.1| putative methyltransferase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145048510|gb|ABP35137.1| putative methyltransferase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 196
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
I+ +S+ L++ S LIF DPP+ G + D ++++A D Y
Sbjct: 104 ILHRDSLEYLKQQTDYSSHLIFIDPPF-----GDAHLLDLAVIEAAR-VCDDSEGGGIYV 157
Query: 83 AFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
F + L P W G Y ++ L
Sbjct: 158 EFPSSRPRQEIEALLPG---WDCGKYLEAGQVKACLFRSGRG 196
>gi|295099932|emb|CBK89021.1| RNA methyltransferase, RsmD family [Eubacterium cylindroides T2-87]
Length = 182
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 1 MSQKNSLAIN---ENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
M +K+ +A+N EN S+ E +II G+ SV+ +L DL++ DPPY
Sbjct: 69 MVEKDRMALNVICENVKSLQEKNCEIISGSIFSVMNRLKEAY-DLVYIDPPY 119
>gi|297199774|ref|ZP_06917171.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197717070|gb|EDY61104.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 728
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 35 LPAKSVDLIFADPPY--NLQLNG--QLYRPDHSLVDAVTD-----------SWDKFSSFE 79
LP SVDL+ DPP+ N+ + + + D + +
Sbjct: 496 LPNNSVDLVITDPPFMDNVHYSELADFFHAWLRQIQPFDDYPTDVGTTRHTEEVQSADPG 555
Query: 80 AYDAFTRAWLLACRRVLKPNG 100
+ A C R+LKP+G
Sbjct: 556 EFGHAIAAVWKECARILKPSG 576
>gi|171778740|ref|ZP_02919836.1| hypothetical protein STRINF_00688 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282697|gb|EDT48121.1| hypothetical protein STRINF_00688 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 182
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-F 248
G L+ DG+ PT ++ G +LD F GSG+ A
Sbjct: 11 FGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDEA 70
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ +E I T+ I + L + +
Sbjct: 71 VLVERNHQAQAIITENIKMTKAEKQFHLMKMDANKA 106
>gi|253577772|ref|ZP_04855044.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850090|gb|EES78048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 189
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 22 KIIKGNSISVLEKLP-AKSVDLIFADPPYN 50
K++ + + L L D+IF DPPYN
Sbjct: 100 KLLNMDVLQALRSLEGKGVFDIIFMDPPYN 129
>gi|228925013|ref|ZP_04088143.1| Modification methylase MvaI [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228834676|gb|EEM80185.1| Modification methylase MvaI [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 557
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLRRSFIGIE 252
L + +P + ++ +L + + + +LDPF GSGT+ AK + F G +
Sbjct: 30 LSSTSNVHSYPAKAVPNMIFDLLENISNQYKVNSVLDPFVGSGTTAVEAKYMGIDFYGSD 89
Query: 253 MKQDYIDIATKRI 265
+ I ++ ++
Sbjct: 90 LNPLAILLSRTKV 102
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 19 WKDKI---IKGNSISVLEKLPAKSVDLIFADPPYN 50
+K+ + I+ ++ L+ L K VD I PPY
Sbjct: 236 YKNNVHSTIELDNAKHLKFLKDKKVDFILTSPPYG 270
>gi|149912153|ref|ZP_01900738.1| putative oxidoreductase [Moritella sp. PE36]
gi|149804774|gb|EDM64818.1| putative oxidoreductase [Moritella sp. PE36]
Length = 710
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N+I K ++++ + ++ L + DLIF DPP
Sbjct: 591 NNISMRKHEVVQADCLAWLARCED-KFDLIFIDPP 624
>gi|150403072|ref|YP_001330366.1| putative RNA methylase [Methanococcus maripaludis C7]
gi|150034102|gb|ABR66215.1| putative RNA methylase [Methanococcus maripaludis C7]
Length = 350
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 204 HPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP L +R LV+ + K G+I+LDPF G+G A L IG ++ + + A
Sbjct: 184 HPGCIMPKL-ARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVKGA 242
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
+ + ++ V++ K+ + + L E G+ + I+T+
Sbjct: 243 ILNLNTY----DLSKQVISIKQNDAKNVSKYLGELGIEKIDGIVTDPP 286
>gi|15921183|ref|NP_376852.1| hypothetical protein ST0947 [Sulfolobus tokodaii str. 7]
gi|15621968|dbj|BAB65961.1| 306aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 306
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 8/151 (5%)
Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICS 190
+ + N +G F + S Y + +K + + +M + +
Sbjct: 62 HDVNEIVKNIKGECFSVDPTVITKEYKSEFLSIYDRIINNIKVSKKCKKMDLIFTEGLII 121
Query: 191 GSERLRNKDGEKLH-PTQKPEAL-------LSRILVSSTKPGDIILDPFFGSGTSGAVAK 242
R+ KD E L ++KP + + R++V+ +K ILDPF G+GT AK
Sbjct: 122 AGLRVEEKDNESLFKHSKKPYSQSGTLSPDIGRLMVNLSKSRKTILDPFVGTGTILIEAK 181
Query: 243 KLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
L + IG+++ I+ + + +
Sbjct: 182 WLGLNCIGLDVDSKMIEKSLVNLRYFGYECD 212
>gi|330829662|ref|YP_004392614.1| ribosomal RNA large subunit methyltransferase L [Aeromonas veronii
B565]
gi|328804798|gb|AEB49997.1| Ribosomal RNA large subunit methyltransferase L [Aeromonas veronii
B565]
Length = 719
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N NS+ + K ++ + + L + + DLIF DPP
Sbjct: 591 NMRLNSLVGRQHKFVQADCLKWLSE-ADEQYDLIFIDPP 628
>gi|183598388|ref|ZP_02959881.1| hypothetical protein PROSTU_01781 [Providencia stuartii ATCC 25827]
gi|188020565|gb|EDU58605.1| hypothetical protein PROSTU_01781 [Providencia stuartii ATCC 25827]
Length = 702
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 22/135 (16%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + ++ L + DLIF DPP R D + F
Sbjct: 590 HRLIQADCLNWLAN-SPEQFDLIFIDPP----TFSNSKRMDGT-----------FDVQRD 633
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ + +R+L+ GT+ + L L + + + K+
Sbjct: 634 HVQL----ITHLKRMLRRGGTIMFSNNKRGFKMDIEALNALG--LQAEEITAKTRSEDFA 687
Query: 141 RGRRFQNAHETLIWA 155
R R+ N A
Sbjct: 688 RNRQIHNCWLIRHAA 702
>gi|317154233|ref|YP_004122281.1| hypothetical protein Daes_2533 [Desulfovibrio aespoeensis Aspo-2]
gi|316944484|gb|ADU63535.1| hypothetical protein Daes_2533 [Desulfovibrio aespoeensis Aspo-2]
Length = 420
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 13/170 (7%)
Query: 173 AANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFF 232
E Q R I +G++ L ++ + PE L+S+ +V S + + LDPF
Sbjct: 4 TFEEWTQGREVPFIGTNAGAQELPFQNWRRFKEAFAPE-LISKAIVESERTVERCLDPFG 62
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
GSGT+ + L +E+ D+ +++ L + + F
Sbjct: 63 GSGTTALACQFLGVYPTTVEVNPFLADLIEAKLSKYDCDKLANLFGRVVRSARSKSNFKR 122
Query: 293 LVER---GLIQP---GQILTNAQ--GNISATVCADGTLISGTELGSIHRV 334
+ E+ ++P G+ + + I+A + A + G E HR+
Sbjct: 123 IFEKTPPTFVEPGVAGRWIFDRPVAERIAAYLTAIDKIAEGKE----HRL 168
Score = 39.6 bits (91), Expect = 0.78, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
G+ VL S DL PPY + V
Sbjct: 237 GDCREVLR--DTNSFDLAVFSPPYPNSFDYTDVYNVELWVLGY 277
>gi|153941224|ref|YP_001391790.1| putative methyltransferase [Clostridium botulinum F str. Langeland]
gi|152937120|gb|ABS42618.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
Langeland]
gi|295319816|gb|ADG00194.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
230613]
Length = 185
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
S+ L +N FE K ++ S LE+ KS+ DLIF DPPY
Sbjct: 74 SETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFARKSIVFDLIFIDPPY 123
>gi|254173370|ref|ZP_04880043.1| SAM-dependent methyltransferase [Thermococcus sp. AM4]
gi|214032779|gb|EEB73608.1| SAM-dependent methyltransferase [Thermococcus sp. AM4]
Length = 285
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
++I G++ V+++ +S D++ DPP
Sbjct: 179 QVIHGDAFEVVKRFKDESFDVVIHDPP 205
>gi|148380448|ref|YP_001254989.1| putative methyltransferase [Clostridium botulinum A str. ATCC 3502]
gi|153934015|ref|YP_001384671.1| putative methyltransferase [Clostridium botulinum A str. ATCC
19397]
gi|153937379|ref|YP_001388192.1| putative methyltransferase [Clostridium botulinum A str. Hall]
gi|148289932|emb|CAL84045.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152930059|gb|ABS35559.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
ATCC 19397]
gi|152933293|gb|ABS38792.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
Hall]
Length = 185
Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
+ L +N FE K ++ S LE+ +KS+ DLIF DPPY
Sbjct: 74 PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFASKSIVFDLIFIDPPY 123
>gi|229843906|ref|ZP_04464047.1| type III restriction/modification system modification methylase
[Haemophilus influenzae 6P18H1]
gi|229812900|gb|EEP48588.1| type III restriction/modification system modification methylase
[Haemophilus influenzae 6P18H1]
Length = 405
Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 11/126 (8%), Positives = 37/126 (29%), Gaps = 1/126 (0%)
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL-NFWILNDIVWRKSNPMPNFRGR 143
+ L + +L +G++W+ + + + + + S + +
Sbjct: 1 MKNRLEIAKTLLADDGSIWISLNDDEVHYAKVLCDEILGRDNFIANIIWHSKYTTSNDAK 60
Query: 144 RFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKL 203
HE +++ + K + +D + ++ D +
Sbjct: 61 FISYQHENILFYAKDKSKFKIGGFSRTEKHNSSYKNPDNDPKGAWKATPLHAKSGDEKNN 120
Query: 204 HPTQKP 209
+ + P
Sbjct: 121 YVIEFP 126
>gi|323144389|ref|ZP_08078997.1| RNA methyltransferase, RsmD family [Succinatimonas hippei YIT
12066]
gi|322415842|gb|EFY06568.1| RNA methyltransferase, RsmD family [Succinatimonas hippei YIT
12066]
Length = 192
Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
N L++ + N++ +++ ++++ L K DLIF DPPY
Sbjct: 83 NYLSLKDTINTLNSKNIQVLNLDALNFLNK-TDNKFDLIFLDPPY 126
>gi|149191332|ref|ZP_01869585.1| predicted methyltransferase [Vibrio shilonii AK1]
gi|148834811|gb|EDL51795.1| predicted methyltransferase [Vibrio shilonii AK1]
Length = 710
Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ + + LEK S DLIF DPP R + S F
Sbjct: 598 HQYIQADCLQWLEK-ANGSYDLIFIDPP----TFSNSKRMEQS-----------FDVQRD 641
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + + L+ L + + + K+ P+
Sbjct: 642 HVTLMTN----LKRLLREEGTIVFSNNKRHFKMDLKALEELG--LKAENISDKTLPLDFA 695
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 696 RNKHIHNCW 704
>gi|110803308|ref|YP_699057.1| O-methyltransferase family protein [Clostridium perfringens SM101]
gi|110683809|gb|ABG87179.1| O-methyltransferase family protein [Clostridium perfringens SM101]
Length = 214
Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
N N + + E + I++G+ + VLE L + D+IF D
Sbjct: 94 NYAKENIKKFGLEEKIN-ILQGDCLEVLESLQDE-FDMIFMD 133
>gi|307595922|ref|YP_003902239.1| putative RNA methylase [Vulcanisaeta distributa DSM 14429]
gi|307551123|gb|ADN51188.1| putative RNA methylase [Vulcanisaeta distributa DSM 14429]
Length = 256
Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
++ T+ G++ LDPF GSG A + IG+++ Y+
Sbjct: 108 LARTEEGEVFLDPFVGSGIIAQEAMLIGARVIGMDINPKYL 148
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I +S+ L + +S+ I DPPYN L SL + + Y A
Sbjct: 159 INSDSL--LSPIRNESIHSIATDPPYNRLSISDLDL--DSLYRGFAEEAFRVLRSGGYVA 214
Query: 84 FTR-------AWLLACRRVLKPNGTLWVIGSYHNIFRI 114
F+ W L L NG +V G + +
Sbjct: 215 FSHPTYVNSLDWFLNAGFELIINGLQYVHGGLTRLIYV 252
>gi|291296860|ref|YP_003508258.1| hypothetical protein Mrub_2487 [Meiothermus ruber DSM 1279]
gi|290471819|gb|ADD29238.1| hypothetical protein Mrub_2487 [Meiothermus ruber DSM 1279]
Length = 328
Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
A+ ++ ++PG +++DP G GT A +L R G ++ D
Sbjct: 148 PAIAEVLIQRYSEPGGLVVDPMAGRGTVVQKALELGRKAWGSDINGD 194
>gi|269123803|ref|YP_003306380.1| putative RNA methylase [Streptobacillus moniliformis DSM 12112]
gi|268315129|gb|ACZ01503.1| putative RNA methylase [Streptobacillus moniliformis DSM 12112]
Length = 249
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 36/85 (42%)
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL 244
+ S +R + + +L+ +K D++LD F G GT+ AK L
Sbjct: 18 MNTHWSFPKRGDWATHDAKWRGNWSPYIPRNLLLRYSKENDLVLDQFAGGGTTLVEAKLL 77
Query: 245 RRSFIGIEMKQDYIDIATKRIASVQ 269
R IG+++ + ++ +++
Sbjct: 78 NRDIIGVDINEVSLERCREKVNFEH 102
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 41/151 (27%), Gaps = 28/151 (18%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I KG++ + L+ + +S+D I PPY N+ D S + +
Sbjct: 111 IHKGDARN-LDFISDESIDFICTHPPYANIIQYSDNIEEDLSHLK-----------IPQF 158
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF------WILNDIVWRKSN 135
+ RVLK + V+ I + + K
Sbjct: 159 LEEMKKVAFESYRVLKNDKFCAVLMGDTRIKGYMQPMSFEVMKIFESEGFKLKEIIIKEQ 218
Query: 136 PMPNFRGRRFQN---------AHETLIWASP 157
G N AHE L
Sbjct: 219 HNCRATGYWKTNSIKYNFLLIAHEYLFIFKK 249
>gi|213025989|ref|ZP_03340436.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 121
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 58 HRLIQADCLGWLRE-ANEQFDLIFIDPP 84
>gi|281420491|ref|ZP_06251490.1| putative methyltransferase [Prevotella copri DSM 18205]
gi|281405264|gb|EFB35944.1| putative methyltransferase [Prevotella copri DSM 18205]
Length = 176
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
+ E KD +I+G+ L+ + D IFADPPY L PD L +
Sbjct: 87 QKLGEDKDILIRGDVFRFLKTC-KQKFDFIFADPPYAL--KELPQIPDLVLNGDYLNEGG 143
Query: 74 K--FSSFEAYDAFTRAWLLACRRVLKPNGTLW 103
F + YD L R N +++
Sbjct: 144 IFVFEHGKDYDFSEHPRFLEHRSYGSVNFSIF 175
>gi|84394217|ref|ZP_00992946.1| putative N6-adenine-specific DNA methylase [Vibrio splendidus
12B01]
gi|84375166|gb|EAP92084.1| putative N6-adenine-specific DNA methylase [Vibrio splendidus
12B01]
Length = 706
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++ + + L K S DLIF DPP R D S F
Sbjct: 595 HQFVQADCLQWLAK-EQGSYDLIFIDPP----TFSNSKRMDQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + + L+ L + + K+ P+
Sbjct: 639 HIQLMED----LKRLLREEGTIVFSNNKRHFKMDMEGLEELG--LKAQNISSKTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|229550589|ref|ZP_04439314.1| cytosine (N4) specific methyltransferase [Enterococcus faecalis
ATCC 29200]
gi|229304308|gb|EEN70304.1| cytosine (N4) specific methyltransferase [Enterococcus faecalis
ATCC 29200]
Length = 432
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 199 DGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G +P + + + + + ++LDPF GSGT+ + GI++
Sbjct: 31 HGFHKYPGKFIPQIPEWAIKNYLSDREQVVLDPFVGSGTTLVESTVFGYDSFGIDIDPLS 90
Query: 258 IDIA 261
I+
Sbjct: 91 CLIS 94
>gi|192359493|ref|YP_001982621.1| 23S rRNA m(2)G2445 methyltransferase [Cellvibrio japonicus Ueda107]
gi|238692446|sp|B3PIL6|RLML_CELJU RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|190685658|gb|ACE83336.1| Putative RNA methylase family UPF0020 family [Cellvibrio japonicus
Ueda107]
Length = 751
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 20/136 (14%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + E ++++ + + + LE + DLI DPP S + D D
Sbjct: 636 NGLSEARNRLEQADCLKWLEN-NDQQFDLILLDPP------------SFSNSKRMEDILD 682
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
+ R L GTL + N L N ++ +
Sbjct: 683 IQRDH-------VEMIHNAMRSLSEEGTLIFSNNLRNFKLDLEALGAYNIEDISARTIDE 735
Query: 134 SNPMPNFRGRRFQNAH 149
+ + H
Sbjct: 736 DFKRNPKIHQCWLIRH 751
>gi|154251631|ref|YP_001412455.1| hypothetical protein Plav_1177 [Parvibaculum lavamentivorans DS-1]
gi|154253989|ref|YP_001414813.1| hypothetical protein Plav_3558 [Parvibaculum lavamentivorans DS-1]
gi|154155581|gb|ABS62798.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
gi|154157939|gb|ABS65156.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
Length = 920
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 35 LPAKSVDLIFADPPY---------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
L +S+D IF DPP+ N+ + + +A+ D + Y
Sbjct: 487 LNNESIDYIFTDPPFGENIYYADLNILVESWHRVLTDASPEAIVDRV-REKGIPEYQHLM 545
Query: 86 RAWLLACRRVLKPNGTLWVIGS 107
RA RVLKP + V+ S
Sbjct: 546 RACFSEYHRVLKPGRWMTVVFS 567
Score = 36.9 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
++ T+PGD++LD F GSG +G A+
Sbjct: 130 ILHYTQPGDVVLDGFAGSGMTGVAAQWCG 158
>gi|18977399|ref|NP_578756.1| hypothetical protein PF1027 [Pyrococcus furiosus DSM 3638]
gi|18893086|gb|AAL81151.1| hypothetical protein PF1027 [Pyrococcus furiosus DSM 3638]
Length = 373
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P L ++ S +LDPF G+GT G ++ Q+ I+ A K I +
Sbjct: 185 PPRLARIMINLSEVRKGNVLDPFCGTGTILVELLLQGLIAYGSDISQERINDARKNIEWI 244
Query: 269 QP 270
+
Sbjct: 245 RK 246
>gi|118576025|ref|YP_875768.1| DNA modification methylase [Cenarchaeum symbiosum A]
gi|118194546|gb|ABK77464.1| DNA modification methylase [Cenarchaeum symbiosum A]
Length = 444
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
S+ L K+ +S+D + PPY + +
Sbjct: 243 SLKALRKMKPRSIDAVVTSPPYANRYDYTRTY 274
>gi|29839903|ref|NP_829009.1| hypothetical protein CCA00135 [Chlamydophila caviae GPIC]
gi|29834250|gb|AAP04887.1| conserved hypothetical protein TIGR00095 [Chlamydophila caviae
GPIC]
Length = 189
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 22 KIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNG 55
I+K + S +++L K S DLI+ DPPYNL+
Sbjct: 94 TIMKQEARSAIQRLTKKGMSFDLIYIDPPYNLENRY 129
>gi|300692636|ref|YP_003753631.1| hypothetical protein RPSI07_3018 [Ralstonia solanacearum PSI07]
gi|299079696|emb|CBJ52373.1| conserved protein of unknown function, methylase putative
[Ralstonia solanacearum PSI07]
Length = 215
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
I++G++ + L + + DL+F DPP+
Sbjct: 117 IVQGDAFAWLARQADGAFDLVFIDPPF 143
>gi|119489594|ref|ZP_01622354.1| hypothetical protein L8106_08296 [Lyngbya sp. PCC 8106]
gi|119454506|gb|EAW35654.1| hypothetical protein L8106_08296 [Lyngbya sp. PCC 8106]
Length = 420
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
PE + + ++ ILDPF G GT+ A K G E + I ++
Sbjct: 34 PEFVWNCCEKANLDDDSKILDPFAGCGTTLVEACKHGLRCFGYEPNPFFCRITQGKL 90
>gi|325967781|ref|YP_004243973.1| RNA methylase [Vulcanisaeta moutnovskia 768-28]
gi|323706984|gb|ADY00471.1| putative RNA methylase [Vulcanisaeta moutnovskia 768-28]
Length = 198
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPY------NLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
I +S+ L + S+ I DPPY N+ L+ + + S
Sbjct: 101 INSDSL--LSPIKDNSIHSIATDPPYNRLSISNIDLDSFYRKFAEESFRILRRGGYIAFS 158
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
Y + W L L +G +V G + +
Sbjct: 159 HPTYVD-SLDWFLNLGFELVISGLQYVHGGLTRLIYV 194
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
++ T ++ LDPF GSG A + IGI+ Y+ +
Sbjct: 49 LARTNENEVFLDPFVGSGIIAQEAMLVGAHVIGIDTNPRYLSM 91
>gi|289811979|ref|ZP_06542608.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 380
Score = 40.8 bits (94), Expect = 0.36, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 269 HRLIQADCLGWLRE-ANEQFDLIFIDPP 295
>gi|218439953|ref|YP_002378282.1| site-specific DNA-methyltransferase (cytosine-specific) [Cyanothece
sp. PCC 7424]
gi|218172681|gb|ACK71414.1| site-specific DNA-methyltransferase (cytosine-specific) [Cyanothece
sp. PCC 7424]
Length = 477
Score = 40.8 bits (94), Expect = 0.36, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM--KQDYIDIATKRI 265
+L+ +L ILDPF GSGT+ A + + GIE+ I A + +
Sbjct: 68 FSASLVEYLLKKYGVDQGKILDPFAGSGTALFAASQSGLNADGIELLSIGQQIIHAKQIL 127
Query: 266 ASVQPLGNIELTVLTGK 282
+ + E K
Sbjct: 128 DTQFTPEDFERLKNWSK 144
>gi|320450210|ref|YP_004202306.1| hypothetical protein TSC_c11370 [Thermus scotoductus SA-01]
gi|320150379|gb|ADW21757.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length = 317
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY--IDIATKRIA 266
P+ + ++ T+ G++++DP G GT A+ L R G ++ ++ A R
Sbjct: 136 PQGVARALVGLYTERGELVVDPMAGYGTVVEAARALGRRAWGGDIDPKGPLVERADIRTL 195
Query: 267 SVQPLGNIELTV-----------LTGKRTEPRVAFNLLVE 295
+ G L V G R P + +E
Sbjct: 196 PERFQGEAALLVLHPPTFASWLASEGHREPPEDRYAGYIE 235
>gi|254430054|ref|ZP_05043761.1| putative methyltransferase [Alcanivorax sp. DG881]
gi|196196223|gb|EDX91182.1| putative methyltransferase [Alcanivorax sp. DG881]
Length = 205
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+ +++S L ++ DL+F DPPY+L L
Sbjct: 115 TVHCADALSWLPA-QREAFDLVFIDPPYDLGL 145
>gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
11664]
gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
11664]
Length = 308
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSIS---VLEKLPAKSVDLIFADPPYNLQLNGQLY 58
S+ N ++ + + ++ G++ + L V+L+ D PYN+ G+
Sbjct: 185 SELNKPTFSKVGDLWHLGRHALLCGDATKKESYQKLLDDHQVNLVLTDLPYNVDYQGKAG 244
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + D + Y F A + + +++++ +
Sbjct: 245 KIKN----------DHQDDDKFY-QFLLAAFQNMNTAMANDASIYILHADTEELNFWRAF 293
Query: 119 QNLNFWILNDIVWR 132
Q+ F++ +W+
Sbjct: 294 QDAGFYLSGCCIWK 307
>gi|157373359|ref|YP_001471959.1| putative methyltransferase [Shewanella sediminis HAW-EB3]
gi|157315733|gb|ABV34831.1| putative methyltransferase [Shewanella sediminis HAW-EB3]
Length = 193
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+IKG+++ +L P++ D+I+ DPP+
Sbjct: 106 VIKGDTLKLLATKPSEGFDIIYIDPPF 132
>gi|113477648|ref|YP_723709.1| hypothetical protein Tery_4236 [Trichodesmium erythraeum IMS101]
gi|110168696|gb|ABG53236.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 934
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 35/184 (19%)
Query: 21 DKIIKGNSI--SVLEKLPAKSVDLIFADPPYNLQLNG----------------------- 55
+K I+ +S L + SVD I DPPY +
Sbjct: 500 NKTIQIDSASADTLYHISDNSVDAIITDPPYYATIQYAELSDFFYVWQRRVLGDIFPDLY 559
Query: 56 --QLYRPDHSLVDAVTDSWDKFSSFEA-----YDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+L D V + + +S + Y+A RVL+ +G + V ++
Sbjct: 560 LTELTDKDREAVANPSRFRNMGTSPDELANQDYEAKIALAFAEHYRVLRDDGVMTVQFNH 619
Query: 109 HNIFRIGTM---LQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYT 165
+ L + F I NP + ++ + L+
Sbjct: 620 KESGAWDVLAKSLIDAGFEITASWAVSTENPQNLHQAKKNSVSSTVLLVCRKRDPNAPQA 679
Query: 166 FNYD 169
+ D
Sbjct: 680 WWDD 683
>gi|194743660|ref|XP_001954318.1| GF18217 [Drosophila ananassae]
gi|190627355|gb|EDV42879.1| GF18217 [Drosophila ananassae]
Length = 486
Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK---RIASVQPLGNI 274
+ + GD++ DPF G+G+ A K +G ++ + A RI+ +
Sbjct: 210 QAMVQEGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVH-ARCRPSRISQKIREKDE 268
Query: 275 ELTVL 279
+
Sbjct: 269 SIRAN 273
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 39 SVDLIFADPPYNLQ-LNGQLYRPDHSLVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
S D I DPPY ++ ++ +S TD + S Y + L +
Sbjct: 301 SFDCIITDPPYGIREATEKVDAKANSKDSTRTDDMVHYPSTSHYSLQSLYGDLLEFAAKH 360
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
L+ G L +H M+ + N
Sbjct: 361 LRLGGRLVCWLPFHREDYNPEMVPHHNN 388
>gi|156744304|ref|YP_001434433.1| hypothetical protein Rcas_4397 [Roseiflexus castenholzii DSM 13941]
gi|156235632|gb|ABU60415.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
Length = 475
Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 208 KPEALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
P L+ L D +LDPF G+GT+ KKL IG+E + T +
Sbjct: 50 FPPHLVRDYLQRFGIGRDHTVLDPFCGTGTTIVECKKLGIPSIGVEAMPWAYFVTTVKTD 109
Query: 267 SVQPLG 272
Sbjct: 110 WTPDPD 115
>gi|320156383|ref|YP_004188762.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Vibrio vulnificus
MO6-24/O]
gi|319931695|gb|ADV86559.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Vibrio vulnificus
MO6-24/O]
Length = 707
Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
K + + + LEK DLIF DPP D F
Sbjct: 595 HKFEQADCLQWLEK-AQGQYDLIFIDPP---------------TFSNSKRMEDSFDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ NGT+ + + ++ L N + ++ P+
Sbjct: 639 HIKLM----KNLKRLLRENGTIVFSNNKRHFKMDMEAMEELGLDAKN--ISSQTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|238852607|ref|ZP_04643017.1| methyltransferase domain protein [Lactobacillus gasseri 202-4]
gi|238834753|gb|EEQ26980.1| methyltransferase domain protein [Lactobacillus gasseri 202-4]
Length = 338
Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 11 ENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+ +++++I N++ +KL D++ +PPY G + PD A
Sbjct: 86 SRSIKLNKFENRIEVHCLNALEAPKKLGKDKYDMVVVNPPYFKVPKGHVINPDEKKALA- 144
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ +LK G ++++ H R+G ++ L+
Sbjct: 145 ---------RHELAINLEQIIKVSSDMLKMKGKMFMV---HRPERLGEIMHYCLENHLSV 192
Query: 129 IVWRKSNPMPN 139
+ N
Sbjct: 193 KWVQPFVSKRN 203
>gi|163783066|ref|ZP_02178061.1| hypothetical protein HG1285_00785 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881746|gb|EDP75255.1| hypothetical protein HG1285_00785 [Hydrogenivirga sp. 128-5-R1-1]
Length = 150
Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 5/34 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVD--LIFADPPYNLQL 53
++I+G+S+ VLE+L V +IFADPPYN +L
Sbjct: 74 RVIRGDSLKVLEQL---KVQPEVIFADPPYNFEL 104
>gi|332878300|ref|ZP_08446026.1| type II DNA modification methyltransferase M.TdeIII [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332683751|gb|EGJ56622.1| type II DNA modification methyltransferase M.TdeIII [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 534
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRIL 217
KA T + + E + +W + E K +LHP + L+ L
Sbjct: 56 KAYYDTLSGNRASEWKEKLGDDLNWSLSFEQYKEAETTKHVHRLHPYKGKFIPQLVEYFL 115
Query: 218 VSST---------KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
S T K GDIILDPF GSGT+ A +L IG+++
Sbjct: 116 DSHTDAFKKEVFFKAGDIILDPFSGSGTTMVQASELGMHAIGVDVS 161
>gi|257467012|ref|ZP_05631323.1| ribosomal protein L11 methyltransferase [Fusobacterium
gonidiaformans ATCC 25563]
Length = 309
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
G HPT +L ++ + G+ +LD GSG VA+KL F G+++ + +
Sbjct: 151 GTGSHPT---TSLCVDLMEEGIQEGETVLDVGTGSGILMIVAEKLGAGFVCGVDIDELAV 207
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
++A + + + + + +V ++ +L +IS+ V
Sbjct: 208 EVANENLELNKVSKEKYKVLHGNLIEKIEKQSYDVVVANILA--DVLLLLLKDISSVVKT 265
Query: 319 DGTLISGTEL 328
G +I +
Sbjct: 266 GGKIIFSGII 275
>gi|315230046|ref|YP_004070482.1| tRNA-(G10-N2) methyltransferase, tRNA-(G10-N2) dimethyltransferase
[Thermococcus barophilus MP]
gi|315183074|gb|ADT83259.1| tRNA-(G10-N2) methyltransferase, tRNA-(G10-N2) dimethyltransferase
[Thermococcus barophilus MP]
Length = 333
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 194 RLRNKDGEKL--HPTQKPEALLSRILVSSTK---PGDIILDPFFGSGTSGAVAKKLRRSF 248
+ + D K P KP AL RI + ILDPF G+G A +
Sbjct: 149 KAKTFDERKADKRPFYKPIALPPRIARAMVNLARAKMEILDPFMGTGGILIEAGLMGLKV 208
Query: 249 IGIEMKQDYIDIATKRIA 266
G+++++D ++ A +
Sbjct: 209 YGVDLRRDMVEGARINLE 226
>gi|254421609|ref|ZP_05035327.1| putative methyltransferase [Synechococcus sp. PCC 7335]
gi|196189098|gb|EDX84062.1| putative methyltransferase [Synechococcus sp. PCC 7335]
Length = 187
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+IIKG+ + ++KL DLI+ DPPY
Sbjct: 93 QIIKGDVVRQIKKL-TGKFDLIYFDPPY 119
>gi|304373117|ref|YP_003856326.1| Protein-(Glutamine-N5) methyltransferase, release factor-specific
[Mycoplasma hyorhinis HUB-1]
gi|304309308|gb|ADM21788.1| Protein-(Glutamine-N5) methyltransferase, release factor-specific
[Mycoplasma hyorhinis HUB-1]
Length = 243
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 1 MSQKNSLAINENQ--NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
+S +S AI +++ + + K KII+ + L+K D+I +PPY L+ +
Sbjct: 111 LSDIDSQAILQSKINAKLNKLKVKIIQSDLFDNLKKY---KFDVIICNPPY---LDFEKS 164
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ D S++D + W+ + + + F + L + LKP G + N+
Sbjct: 165 KLDSSVLDY--EPWNALFAKQKGNYFYQKILKQYKNFLKPKGVILFEIDQTNLEFFNKYY 222
Query: 119 QNL 121
Sbjct: 223 PEF 225
>gi|330723257|gb|AEC45627.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
[Mycoplasma hyorhinis MCLD]
Length = 243
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 1 MSQKNSLAINENQ--NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
+S +S AI +++ + + K KII+ + L+K D+I +PPY L+ +
Sbjct: 111 LSDIDSQAILQSKINAKLNKLKVKIIQSDLFDNLKKY---KFDVIICNPPY---LDFEKS 164
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ D S++D + W+ + + + F + L + LKP G + N+
Sbjct: 165 KLDSSVLDY--EPWNALFAKQKGNYFYQKILKQYKSFLKPKGVILFEIDQTNLEFFNKYY 222
Query: 119 QNL 121
Sbjct: 223 PEF 225
>gi|296133000|ref|YP_003640247.1| protein of unknown function DUF548 [Thermincola sp. JR]
gi|296031578|gb|ADG82346.1| protein of unknown function DUF548 [Thermincola potens JR]
Length = 270
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 10 NENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADP 47
+ I E +I I + ++ L+ LP S D+++ DP
Sbjct: 149 RDKNEKINEAMRRIEVINADYLNYLKTLPDNSFDIVYFDP 188
>gi|320540476|ref|ZP_08040126.1| putative 23S rRNA mG2445 methyltransferase, SAM-dependent [Serratia
symbiotica str. Tucson]
gi|320029407|gb|EFW11436.1| putative 23S rRNA mG2445 methyltransferase, SAM-dependent [Serratia
symbiotica str. Tucson]
Length = 718
Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S + ++ D+IF DPP
Sbjct: 603 HRLIQADCLSWMNN-ASEQFDVIFIDPP 629
>gi|37679840|ref|NP_934449.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio vulnificus YJ016]
gi|81859891|sp|Q7MKX1|RLML_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|37198585|dbj|BAC94420.1| predicted N6-adenine-specific DNA methylase [Vibrio vulnificus
YJ016]
Length = 707
Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
K + + + LEK DLIF DPP D F
Sbjct: 595 HKFEQADCLQWLEK-AQGQYDLIFIDPP---------------TFSNSKRMEDSFDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ NGT+ + + ++ L N + ++ P+
Sbjct: 639 HIKLM----KNLKRLLRENGTIVFSNNKRHFKMDMEAMEELGLDAKN--ISSQTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|57505936|ref|ZP_00371860.1| hypothetical protein CUPA0072 [Campylobacter upsaliensis RM3195]
gi|57015736|gb|EAL52526.1| hypothetical protein CUPA0072 [Campylobacter upsaliensis RM3195]
Length = 788
Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 18/150 (12%)
Query: 35 LPAKSVDLIFADPPY-------------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
L KS+D I DPPY N+ L R + + + +K + + Y
Sbjct: 331 LNEKSIDFIMTDPPYGGLVRYLDLSYIWNIWLKSYDKRFANIDFNG-EITINKKVNLKNY 389
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG---TMLQNLNFWILNDIVWRKSNPMP 138
+ L +VLK +G + + I L+N NF I I + +
Sbjct: 390 ETRFTTALKQIHKVLKDDGVMVITFHNKEIKIWNIFIKALKNANFVIEKVIHQKNARSGE 449
Query: 139 NFRGRRF-QNAHETLIWASPSPKAKGYTFN 167
+ + + + I + N
Sbjct: 450 SVVANPYGTSGTDFYIRCKKDFNSNKKIHN 479
>gi|167855190|ref|ZP_02477960.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Haemophilus parasuis 29755]
gi|167853643|gb|EDS24887.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Haemophilus parasuis 29755]
Length = 799
Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 207 QKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+KP + S + + T I LDPF GSG S A KL IG ++
Sbjct: 27 KKPHNIWSEYIKNYTPSNGIYLDPFCGSGISIIEALKLGIKAIGFDLNP 75
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY------------N 50
+K S + + +++ F+ K ++ NSI L S+D I DPPY
Sbjct: 304 KKVSESDKKKKDNSFDIKYGVVDINSID--NYLDKSSIDFIITDPPYGGLVQYLDLSYIW 361
Query: 51 LQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
L + +A + E Y +LK +G
Sbjct: 362 LSWLKEYDENYSPNFNAEITIKENIFDNEVYKKRLIGAFKKLHYLLKDDG 411
>gi|225849233|ref|YP_002729397.1| hypothetical protein SULAZ_1430 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643761|gb|ACN98811.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 170
Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 9 INENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
+ + +++ K + +++ L+ A S D+IFADPPY+ + +L
Sbjct: 74 VENIKKKAKNYQNAKFVVSDALKFLKT--ANSFDIIFADPPYDYKFYDKLI 122
>gi|328708016|ref|XP_003243572.1| PREDICTED: hypothetical protein LOC100573483 isoform 2
[Acyrthosiphon pisum]
Length = 407
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 3/196 (1%)
Query: 93 RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ K N L +G N ++ T + ++ + ++ + +N H+
Sbjct: 121 KPSAKINAVLKDLGFVCNNDKMYTFYPSQIYYFKDAQKHITRYGQKSYIAPKLKNPHQKS 180
Query: 153 IWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL 212
I N + L + + + +R D E + PE L
Sbjct: 181 IIKKTHSNQLNCQINTNNLHQNKQLPTKYWSMRHLLFTNFDRGILLDTESFYSVC-PEVL 239
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
I +I+LDPF G+G + K + + ++ + I +A
Sbjct: 240 SYHIAKRC--KNNIVLDPFCGAGGNIIQLAKTCKRVLACDIDPNKIRLARHNAEIYGVAH 297
Query: 273 NIELTVLTGKRTEPRV 288
I+ V + P++
Sbjct: 298 KIDFVVGDIFQIYPKL 313
>gi|313143402|ref|ZP_07805595.1| ulcer associated adenine specific DNA methyltransferase
[Helicobacter cinaedi CCUG 18818]
gi|313128433|gb|EFR46050.1| ulcer associated adenine specific DNA methyltransferase
[Helicobacter cinaedi CCUG 18818]
Length = 390
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTD--SWD 73
G+S+ +L+ +S+D+++ DPPYN Q L R D+ + V W
Sbjct: 249 FCGDSVKLLQSF-KESIDILYLDPPYN-QRQYAPNYHLLETLARYDNPSIKGVAGMREWG 306
Query: 74 KFSSF 78
K S
Sbjct: 307 KQKSL 311
>gi|256819524|ref|YP_003140803.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
ochracea DSM 7271]
gi|256581107|gb|ACU92242.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
7271]
Length = 528
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSST---------K 222
E + +W + E K +LHP + L+ L T K
Sbjct: 70 WKEKLGDDLNWSLSFEQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDGHTDAFKKEVFFK 129
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
GDI+LDPF GSGT+ A +L IGI++
Sbjct: 130 AGDIVLDPFSGSGTTMVQASELGMHAIGIDVS 161
>gi|213423692|ref|ZP_03356672.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 316
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 205 HRLIQADCLGWLRE-ANEQFDLIFIDPP 231
>gi|256811021|ref|YP_003128390.1| putative RNA methylase [Methanocaldococcus fervens AG86]
gi|256794221|gb|ACV24890.1| putative RNA methylase [Methanocaldococcus fervens AG86]
Length = 351
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
++ K GD++LDPF G+G A + IG ++ + L N
Sbjct: 200 LARVKEGDVVLDPFCGTGGFLIEAGLIGAKLIGCDIDWRMASGTLINLEEYNLLDN---- 255
Query: 278 VLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
V+ K+ + + L E + + ++T+
Sbjct: 256 VIKVKKLDAKYVKEFLNELNIEKVDAVVTDPP 287
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQ 56
L +L + VD + DPPY + +
Sbjct: 269 EFLNELNIEKVDAVVTDPPYGISTAKK 295
>gi|325290540|ref|YP_004266721.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
[Syntrophobotulus glycolicus DSM 8271]
gi|324965941|gb|ADY56720.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
[Syntrophobotulus glycolicus DSM 8271]
Length = 312
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 44/258 (17%), Positives = 74/258 (28%), Gaps = 18/258 (6%)
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
++P G + G + RI +L + + V + + G +
Sbjct: 55 MEPTGCCLIKGYFPEDERILDILSGIREGLARLKVLFPEWILRSETGTVRERDWA--DEW 112
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
K + + +D LI I G G HPT +L
Sbjct: 113 KKFFKPVRIGRRWLIEPTWEKAEVQENDILIRIDPGM-----AFGTGTHPT---TSLCLE 164
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN-- 273
+ KPG + D GSG A KL ++ + IA + Q G
Sbjct: 165 AIEDLVKPGMTVFDIGTGSGILAVAAAKLGGKVQAGDIDALAVRIAKENAELNQVEGKVT 224
Query: 274 -IELTVLTGKRTEPRVAFNLLVER---GLIQPGQILTNAQGNISATVCADGTLISGTELG 329
+ + V +V L+ + L G A+ D +
Sbjct: 225 VEAGNLGDIFKGRADVVIANIVADVIIELLPQLENLMAEDGVFVASGIIDTRV--QDLET 282
Query: 330 SIHRVGAKVSGSETCNGW 347
I + G ++ GW
Sbjct: 283 EIQKAGMRMIRKREDAGW 300
>gi|255089364|ref|XP_002506604.1| DNA methyltransferase [Micromonas sp. RCC299]
gi|226521876|gb|ACO67862.1| DNA methyltransferase [Micromonas sp. RCC299]
Length = 563
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R G +P A RIL PG+ +LDPF G GTS V R G+++
Sbjct: 98 RTTHGFHEYPAGMQAAAADRIL--DVLPGNSLLDPFAGGGTSLVVGMSKGRETFGVDVSP 155
Query: 256 DYIDIATKRIASVQPLGNIE 275
+AT R P E
Sbjct: 156 LAAFVATHRTWRPAPGAEEE 175
>gi|89093754|ref|ZP_01166700.1| hypothetical protein MED92_04629 [Oceanospirillum sp. MED92]
gi|89081884|gb|EAR61110.1| hypothetical protein MED92_04629 [Oceanospirillum sp. MED92]
Length = 398
Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 2 SQKNSLAINENQNSIFEWKDKI--IKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQL 57
+ +L + I +D+ G++ + + L + D++ DPP +Q +
Sbjct: 251 ASHFALEVAAENARINNAEDRFEGFHGDAFDICKSLIADKEKFDVVVLDPPAFIQKKKDV 310
Query: 58 YRPDH 62
+
Sbjct: 311 RNGER 315
>gi|296536606|ref|ZP_06898684.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
gi|296263065|gb|EFH09612.1| DNA methylase N-4/N-6 [Roseomonas cervicalis ATCC 49957]
Length = 630
Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR 246
+PT+ ++ L TKPGD +LD F GSGT+G A R
Sbjct: 57 YPTKISPEAIALFLAVHTKPGDTVLDTFGGSGTTGLAALLCDR 99
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 22/87 (25%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW-----DK----------FSSFE 79
LP SV +F DPP+ ++ V+ ++++W D+ S E
Sbjct: 424 LPDASVSYVFTDPPFG-------DYIPYAEVNQISEAWLGKLTDRSEEIVISPSGGKSVE 476
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIG 106
Y RVLKP G V+
Sbjct: 477 TYGRMMADVFAEIARVLKPEGKATVVF 503
>gi|253999626|ref|YP_003051689.1| methyltransferase [Methylovorus sp. SIP3-4]
gi|253986305|gb|ACT51162.1| methyltransferase [Methylovorus sp. SIP3-4]
Length = 214
Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 23 IIKGNSISVLE----KLPAKSVDLIFADPPYNLQ 52
++ ++ +L KL A S D+IF DPPYN
Sbjct: 125 LLNADAAQLLNAPSAKLEAGSFDVIFLDPPYNQG 158
>gi|308273415|emb|CBX30017.1| hypothetical protein N47_D28260 [uncultured Desulfobacterium sp.]
Length = 1002
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 206 TQKP--EALLSRILVSSTKPGDI----ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
KP +++ T D ILDPF G GT+ A +L GI++
Sbjct: 62 AMKPSGTDIMAEFYKDHTNDPDTNDIRILDPFMGGGTTVVEALRLGCRVTGIDLNP---- 117
Query: 260 IATKRIASV-QPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
+A + + +P+ EL + E V+ L+
Sbjct: 118 VAWFIVKTEAEPVDIDELKAAFKRLEERPTHSGKTVKEELL 158
>gi|15668892|ref|NP_247695.1| hypothetical protein MJ_0710 [Methanocaldococcus jannaschii DSM
2661]
gi|2501585|sp|Q58120|TMG10_METJA RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
Trm-G10; AltName: Full=tRNA:G10 dimethyltransferase
gi|1591426|gb|AAB98704.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 351
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 201 EKLHP-TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ HP P+ + + ++ K GDI+LDPF G+G A + IG ++
Sbjct: 182 KYFHPGCMLPKLARAMVNLARVKEGDIVLDPFCGTGGFLIEAGLIGAKLIGCDIDWRMAS 241
Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
+ L V+ KR + + L E + + I+T+
Sbjct: 242 GTLINLEEYNLLDK----VIKVKRLDAKYVKEFLNELNIEKVDAIVTDPP 287
Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQ 56
L +L + VD I DPPY + +
Sbjct: 269 EFLNELNIEKVDAIVTDPPYGISTAKK 295
>gi|41615225|ref|NP_963723.1| hypothetical protein NEQ440 [Nanoarchaeum equitans Kin4-M]
gi|40068949|gb|AAR39284.1| NEQ440 [Nanoarchaeum equitans Kin4-M]
Length = 295
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 1/106 (0%)
Query: 160 KAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVS 219
F + D L ERL + HP+ L ++
Sbjct: 86 NRIKMDFKGEKWVIVKSDKVYAGPLLKINRIPKERLPHNKP-CFHPSSIIPTLAKVLINL 144
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
+ I DPF G G A + G ++ + ++ A + +
Sbjct: 145 TGLKEGTIYDPFCGIGGILIEAALMGFQVKGSDIDEKMLECAKQNL 190
>gi|315918150|ref|ZP_07914390.1| ribosomal protein L11 methyltransferase [Fusobacterium
gonidiaformans ATCC 25563]
gi|313692025|gb|EFS28860.1| ribosomal protein L11 methyltransferase [Fusobacterium
gonidiaformans ATCC 25563]
Length = 313
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
G HPT +L ++ + G+ +LD GSG VA+KL F G+++ + +
Sbjct: 155 GTGSHPT---TSLCVDLMEEGIQEGETVLDVGTGSGILMIVAEKLGAGFVCGVDIDELAV 211
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
++A + + + + + +V ++ +L +IS+ V
Sbjct: 212 EVANENLELNKVSKEKYKVLHGNLIEKIEKQSYDVVVANILA--DVLLLLLKDISSVVKT 269
Query: 319 DGTLISGTEL 328
G +I +
Sbjct: 270 GGKIIFSGII 279
>gi|227356872|ref|ZP_03841251.1| N6-adenine-specific DNA methytransferase [Proteus mirabilis ATCC
29906]
gi|227162942|gb|EEI47887.1| N6-adenine-specific DNA methytransferase [Proteus mirabilis ATCC
29906]
Length = 716
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + ++++ + + L + + D+IF DPP R +++
Sbjct: 595 NGLSGRQHRLMQADCLQWLSQ-SNEQFDVIFIDPP----TFSNSKRMENT---------- 639
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F + +R+L+ +GT+ + L N+ + +K
Sbjct: 640 -FDVQRDHIELM----KHLKRLLRKDGTIMFSNNKRGFKMDHEALANIGLTAKE--ITQK 692
Query: 134 SNPMPNFRGRRFQNAH 149
+ R R+ N
Sbjct: 693 TLSQDFARNRQIHNCW 708
>gi|197284666|ref|YP_002150538.1| 23S rRNA m(2)G2445 methyltransferase [Proteus mirabilis HI4320]
gi|229560193|sp|B4EVC6|RLML_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|194682153|emb|CAR41773.1| putative RNA methylase [Proteus mirabilis HI4320]
Length = 704
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + ++++ + + L + + D+IF DPP R +++
Sbjct: 583 NGLSGRQHRLMQADCLQWLSQ-SNEQFDVIFIDPP----TFSNSKRMENT---------- 627
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F + +R+L+ GT+ + L N+ + +K
Sbjct: 628 -FDVQRDHIELM----KHLKRLLRKGGTIMFSNNKRGFKMDHEALANIGLTAKE--ITQK 680
Query: 134 SNPMPNFRGRRFQNAH 149
+ R R+ N
Sbjct: 681 TLSQDFARNRQIHNCW 696
>gi|213582643|ref|ZP_03364469.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 150
Score = 40.4 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + + L + + DLIF DPP
Sbjct: 88 HRLIQADCLGWLRE-ANEQFDLIFIDPP 114
>gi|195497083|ref|XP_002095951.1| GE25419 [Drosophila yakuba]
gi|194182052|gb|EDW95663.1| GE25419 [Drosophila yakuba]
Length = 488
Score = 40.4 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+ + GD++ DPF GSG+ A K +G ++ + A R
Sbjct: 209 QAMVRKGDLVFDPFVGSGSLLVSAAKWGGYVLGADIDYMMVH-ARCR 254
>gi|188591103|ref|YP_001795703.1| hypothetical protein RALTA_A0311 [Cupriavidus taiwanensis LMG
19424]
gi|170937997|emb|CAP62981.1| conserved hypothetical protein, putative methyltransferase
[Cupriavidus taiwanensis LMG 19424]
Length = 215
Score = 40.4 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
++++G++ ++ +LP S D++F DPP+
Sbjct: 121 RVMQGDAFAIAAQLPDASFDVVFLDPPF 148
>gi|113866396|ref|YP_724885.1| methyltransferase [Ralstonia eutropha H16]
gi|113525172|emb|CAJ91517.1| Methyltransferase [Ralstonia eutropha H16]
Length = 230
Score = 40.4 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
++++G++ ++ +LP S D++F DPP+
Sbjct: 136 RVMQGDAFAIAAQLPDASFDVVFLDPPF 163
>gi|315453957|ref|YP_004074227.1| DNA methylase N-4/N-6 domain-containing protein [Helicobacter felis
ATCC 49179]
gi|315133009|emb|CBY83637.1| DNA methylase N-4/N-6 domain protein [Helicobacter felis ATCC
49179]
Length = 69
Score = 40.4 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
++LD F G G++G ++ FIG+E DY IA + + +
Sbjct: 1 MVLDYFAGGGSTGVACAQMGLDFIGVEKSADYARIAQENLQKAFENKGSLFEEIES 56
>gi|55978368|ref|YP_145424.1| hypothetical protein TTHB185 [Thermus thermophilus HB8]
gi|55773541|dbj|BAD71981.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 314
Score = 40.4 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
P A+ ++ T+ G+++LDP G GT A+ L R G ++
Sbjct: 135 PMAVARALVQLYTREGELVLDPMAGRGTVVEAARALDRRAWGGDI 179
>gi|317058263|ref|ZP_07922748.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313683939|gb|EFS20774.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 313
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
G HPT +L ++ + G+ +LD GSG VA+KL F G+++ + +
Sbjct: 155 GTGSHPT---TSLCVDLMEEGIQEGETVLDVGTGSGILMIVAEKLGAGFVCGVDIDELAV 211
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
++A + + + + + +V ++ +L +IS+ V
Sbjct: 212 EVANENLELNKVSKEKYKVLHGNLIEKIEKQSYDVVVANILA--DVLLLLLKDISSVVKT 269
Query: 319 DGTLISGTEL 328
G +I +
Sbjct: 270 GGKIIFSGII 279
>gi|149921487|ref|ZP_01909939.1| putative RNA methylase [Plesiocystis pacifica SIR-1]
gi|149817690|gb|EDM77157.1| putative RNA methylase [Plesiocystis pacifica SIR-1]
Length = 399
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 26/111 (23%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWD------- 73
++ G++ + + ++SVDLI PPY N+ ++ V+++ WD
Sbjct: 189 RVRLGDARAT--GVESRSVDLIVTSPPYVNV---YNYHQKYRGSVESMG--WDVLAAARS 241
Query: 74 KFSSFEAY--------DAFTR---AWLLACRRVLKPNGTLWVIGSYHNIFR 113
+ S + F RVLKP G+ V+ ++ R
Sbjct: 242 EIGSNRKHRGNRVLTVIQFCMDMADVFAEMERVLKPGGSAVVVVGRESMVR 292
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 26/68 (38%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
R + + Q L+ IL + +LDPF GSGT + +G+E+
Sbjct: 11 RDKERSNPLEWKGQFSPQLVEAILGFYSDGATTVLDPFVGSGTVLLETARRGLVPLGVEV 70
Query: 254 KQDYIDIA 261
+A
Sbjct: 71 NPAAYHLA 78
>gi|257451704|ref|ZP_05617003.1| ribosomal protein L11 methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 309
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYI 258
G HPT +L ++ + G+ +LD GSG VA+KL F G+++ + +
Sbjct: 151 GTGSHPT---TSLCVDLMEEGIQEGETVLDVGTGSGILMIVAEKLGAGFVCGVDIDELAV 207
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
++A + + + + + +V ++ +L +IS+ V
Sbjct: 208 EVANENLELNKVSKEKYKVLHGNLIEKIEKQSYDVVVANILA--DVLLLLLKDISSVVKT 265
Query: 319 DGTLISGTEL 328
G +I +
Sbjct: 266 GGKIIFSGII 275
>gi|325273728|ref|ZP_08139928.1| SAM-dependent methyltransferase [Pseudomonas sp. TJI-51]
gi|324101148|gb|EGB98794.1| SAM-dependent methyltransferase [Pseudomonas sp. TJI-51]
Length = 398
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
I+G+ L +L + D+I ADPP ++ L +
Sbjct: 275 IEGDVFEALRELKAAEERFDVIIADPPAFIKRKKDLKNGE 314
>gi|170761314|ref|YP_001787874.1| O-methyltransferase family protein [Clostridium botulinum A3 str.
Loch Maree]
gi|169408303|gb|ACA56714.1| O-methyltransferase family protein [Clostridium botulinum A3 str.
Loch Maree]
Length = 218
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ I +N+I ++ K KII+G+ + +L+ L D+IF D
Sbjct: 87 ERDDKMIEIAKNNIEKYSFKDKIKIIQGDCLEILKNLED-KYDMIFMD 133
>gi|167036166|ref|YP_001671397.1| hypothetical protein PputGB1_5177 [Pseudomonas putida GB-1]
gi|166862654|gb|ABZ01062.1| conserved hypothetical protein [Pseudomonas putida GB-1]
Length = 398
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
I+G+ L +L + D+I ADPP ++ L +
Sbjct: 275 IEGDVFEALRELKAAEERFDVIIADPPAFIKRKKDLKNGE 314
>gi|170719525|ref|YP_001747213.1| hypothetical protein PputW619_0338 [Pseudomonas putida W619]
gi|169757528|gb|ACA70844.1| conserved hypothetical protein [Pseudomonas putida W619]
Length = 398
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
I+G+ L +L + D+I ADPP ++ L +
Sbjct: 275 IEGDVFEALRELKAAEERFDVIIADPPAFIKRKKDLKNGE 314
>gi|104779566|ref|YP_606064.1| hypothetical protein PSEEN0284 [Pseudomonas entomophila L48]
gi|95108553|emb|CAK13247.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 398
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
I+G+ L +L + D+I ADPP ++ L +
Sbjct: 275 IEGDVFEALRELKAAEERFDVIIADPPAFIKRKKDLKNGE 314
>gi|26991803|ref|NP_747228.1| hypothetical protein PP_5127 [Pseudomonas putida KT2440]
gi|24986915|gb|AAN70692.1|AE016712_10 conserved hypothetical protein [Pseudomonas putida KT2440]
Length = 398
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
I+G+ L +L + D+I ADPP ++ L +
Sbjct: 275 IEGDVFEALRELKAAEERFDVIIADPPAFIKRKKDLKNGE 314
>gi|148550203|ref|YP_001270305.1| hypothetical protein Pput_5001 [Pseudomonas putida F1]
gi|148514261|gb|ABQ81121.1| SAM-dependent methyltransferase [Pseudomonas putida F1]
gi|313501103|gb|ADR62469.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
Length = 398
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
I+G+ L +L + D+I ADPP ++ L +
Sbjct: 275 IEGDVFEALRELKAAEERFDVIIADPPAFIKRKKDLKNGE 314
>gi|297192052|ref|ZP_06909450.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
gi|197719498|gb|EDY63406.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
Length = 281
Score = 40.4 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ G++++ L +L VDL+ ++PPY
Sbjct: 161 TVHHGDALTALPEL-DGQVDLVISNPPY 187
>gi|323474512|gb|ADX85118.1| putative RNA methylase [Sulfolobus islandicus REY15A]
gi|323477248|gb|ADX82486.1| putative RNA methylase [Sulfolobus islandicus HVE10/4]
Length = 312
Score = 40.4 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 198 KDGEKLHP---TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ +K T PE SR+LV+ ++P +LDPF G+G+ A+ L IG ++
Sbjct: 138 EHEKKPFSQSGTMSPE--TSRLLVNLSRPKKEVLDPFVGTGSILIEARWLNYDCIGSDLD 195
Query: 255 QDYIDIATKRIASVQPLGN 273
+ + + N
Sbjct: 196 KTMLQKTKTNLNYFNYDCN 214
>gi|255524278|ref|ZP_05391237.1| methyltransferase [Clostridium carboxidivorans P7]
gi|296185397|ref|ZP_06853807.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
gi|255512103|gb|EET88384.1| methyltransferase [Clostridium carboxidivorans P7]
gi|296050231|gb|EFG89655.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
Length = 186
Score = 40.4 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
+ S + +N F+ K I +S LE+ K + DLIF DPPY
Sbjct: 75 PETYSFLVKNVENLKFQQICKCINMDSYKALEEFARKKIVFDLIFIDPPY 124
>gi|148978841|ref|ZP_01815194.1| predicted methyltransferase [Vibrionales bacterium SWAT-3]
gi|145962152|gb|EDK27437.1| predicted methyltransferase [Vibrionales bacterium SWAT-3]
Length = 706
Score = 40.4 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++ + + L K S DLIF DPP R D S F
Sbjct: 595 HQFVQADCLQWLVK-EQGSYDLIFIDPP----TFSNSKRMDQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + + L L + + K+ P+
Sbjct: 639 HIQLM----ENLKRLLRDEGTIVFSNNKRHFKMDLEALDELG--LKAQNISAKTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|15897911|ref|NP_342516.1| hypothetical protein SSO1044 [Sulfolobus solfataricus P2]
gi|13814228|gb|AAK41306.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602620|gb|ACX92223.1| putative RNA methylase [Sulfolobus solfataricus 98/2]
Length = 314
Score = 40.4 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 197 NKDGEKLHP---TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
++ +K T PE SR+LV+ ++P +LDPF G+G+ A+ L IG ++
Sbjct: 139 HEHEKKPFSQSGTMNPE--TSRLLVNLSRPKKEVLDPFVGTGSILIEARWLNYECIGSDL 196
Query: 254 KQDYIDIATKRIASVQPLGN 273
+ + + +
Sbjct: 197 DKAMLQKTKINLNYFNYYCS 216
>gi|89894032|ref|YP_517519.1| hypothetical protein DSY1286 [Desulfitobacterium hafniense Y51]
gi|219668416|ref|YP_002458851.1| methyltransferase type 11 [Desulfitobacterium hafniense DCB-2]
gi|89333480|dbj|BAE83075.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538676|gb|ACL20415.1| Methyltransferase type 11 [Desulfitobacterium hafniense DCB-2]
Length = 301
Score = 40.4 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSG-TSGAVAKKLRRSFIGIEMKQDYIDIAT 262
HP P + + V GD ILD GSG T+ +AK IG+++ I+ A
Sbjct: 33 HPGGFPATV-KNLEVMDVNDGDFILDAGCGSGLTACYLAKNKGCKIIGVDINSQMIEKAR 91
Query: 263 KRIASVQPLGNIELTVLTGKRTE-PRVAFNLLV 294
+R +E V R P F+ ++
Sbjct: 92 QRAEHEGVAHLVEFRVADVNRLPFPDDHFDWIM 124
>gi|328553098|gb|AEB23590.1| methyltransferase [Bacillus amyloliquefaciens TA208]
gi|328912130|gb|AEB63726.1| putative methyltransferase [Bacillus amyloliquefaciens LL3]
Length = 256
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
+ L LP SVD+I+ DP
Sbjct: 160 HADCSDYLRNLPDSSVDVIYFDP 182
>gi|308173976|ref|YP_003920681.1| methyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|307606840|emb|CBI43211.1| putative methyltransferase [Bacillus amyloliquefaciens DSM 7]
Length = 256
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
+ L LP SVD+I+ DP
Sbjct: 160 HADCSDYLRNLPDSSVDVIYFDP 182
>gi|306836194|ref|ZP_07469178.1| type III restriction-modification system methyltransferase
[Corynebacterium accolens ATCC 49726]
gi|304567915|gb|EFM43496.1| type III restriction-modification system methyltransferase
[Corynebacterium accolens ATCC 49726]
Length = 285
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 203 LHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
K + +L K DI+LD F GSGT+G A +Y
Sbjct: 33 GFDFPKSVDFIRWLLAFGLKDDDIVLDFFAGSGTTGQAA-------------FEYAKAHQ 79
Query: 263 KRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILT 306
R + +G+ + + L + G L
Sbjct: 80 IRANFILVQLPEPFKNKSGETSIMTPTISSFARERLQRAGSKLI 123
>gi|262361448|gb|ACY58169.1| hypothetical protein YPD4_1261 [Yersinia pestis D106004]
Length = 663
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 537 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 574
>gi|238792370|ref|ZP_04636004.1| hypothetical protein yinte0001_12980 [Yersinia intermedia ATCC
29909]
gi|238728296|gb|EEQ19816.1| hypothetical protein yinte0001_12980 [Yersinia intermedia ATCC
29909]
Length = 663
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 537 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 574
>gi|167044428|gb|ABZ09104.1| putative DNA methylase [uncultured marine crenarchaeote
HF4000_APKG6D9]
Length = 463
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 26/72 (36%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
R + + L+ L + K + DPF G GT+ + GI++
Sbjct: 71 RPVHNWFNYTQGFSKNLIDFCLDLTIKKPRFVFDPFSGVGTTSLSCLEHGIKSTGIDISP 130
Query: 256 DYIDIATKRIAS 267
+ I+ ++
Sbjct: 131 LAVFISNVKLDW 142
>gi|186894863|ref|YP_001871975.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
PB1/+]
gi|229560199|sp|B2JYS1|RLML_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|186697889|gb|ACC88518.1| putative RNA methylase [Yersinia pseudotuberculosis PB1/+]
Length = 706
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|145599549|ref|YP_001163625.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Pestoides F]
gi|229560201|sp|A4TMZ0|RLML_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|145211245|gb|ABP40652.1| hypothetical protein YPDSF_2277 [Yersinia pestis Pestoides F]
Length = 706
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|238789288|ref|ZP_04633075.1| hypothetical protein yfred0001_40970 [Yersinia frederiksenii ATCC
33641]
gi|238722620|gb|EEQ14273.1| hypothetical protein yfred0001_40970 [Yersinia frederiksenii ATCC
33641]
Length = 706
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|238795880|ref|ZP_04639393.1| hypothetical protein ymoll0001_25520 [Yersinia mollaretii ATCC
43969]
gi|238720343|gb|EEQ12146.1| hypothetical protein ymoll0001_25520 [Yersinia mollaretii ATCC
43969]
Length = 706
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|22126629|ref|NP_670052.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis KIM 10]
gi|45441002|ref|NP_992541.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis biovar
Microtus str. 91001]
gi|108806710|ref|YP_650626.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Antiqua]
gi|108812720|ref|YP_648487.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Nepal516]
gi|149366675|ref|ZP_01888709.1| hypothetical protein YPE_1910 [Yersinia pestis CA88-4125]
gi|162420288|ref|YP_001606460.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Angola]
gi|165924470|ref|ZP_02220302.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165938952|ref|ZP_02227505.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
IP275]
gi|166010221|ref|ZP_02231119.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211676|ref|ZP_02237711.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399732|ref|ZP_02305250.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167419556|ref|ZP_02311309.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423963|ref|ZP_02315716.1| putative methyltransferase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170024866|ref|YP_001721371.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
YPIII]
gi|218928566|ref|YP_002346441.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis CO92]
gi|229841394|ref|ZP_04461553.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229843499|ref|ZP_04463645.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229895874|ref|ZP_04511044.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Pestoides A]
gi|229903120|ref|ZP_04518233.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Nepal516]
gi|270486917|ref|ZP_06203991.1| THUMP domain protein [Yersinia pestis KIM D27]
gi|294503405|ref|YP_003567467.1| hypothetical protein YPZ3_1295 [Yersinia pestis Z176003]
gi|122979748|sp|Q1CA41|RLML_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|123246336|sp|Q1CGJ3|RLML_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|123777462|sp|Q7CHK7|RLML_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|229560200|sp|A9R7L5|RLML_YERPG RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|229560202|sp|B1JQR7|RLML_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|21959639|gb|AAM86303.1|AE013877_11 putative oxidoreductase [Yersinia pestis KIM 10]
gi|45435861|gb|AAS61418.1| Predicted N6-adenine-specific DNA methylases [Yersinia pestis
biovar Microtus str. 91001]
gi|108776368|gb|ABG18887.1| hypothetical protein YPN_2559 [Yersinia pestis Nepal516]
gi|108778623|gb|ABG12681.1| hypothetical protein YPA_0713 [Yersinia pestis Antiqua]
gi|115347177|emb|CAL20070.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|149291049|gb|EDM41124.1| hypothetical protein YPE_1910 [Yersinia pestis CA88-4125]
gi|162353103|gb|ABX87051.1| putative methyltransferase [Yersinia pestis Angola]
gi|165913099|gb|EDR31723.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
IP275]
gi|165923530|gb|EDR40662.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990707|gb|EDR43008.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207447|gb|EDR51927.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962297|gb|EDR58318.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050440|gb|EDR61848.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056812|gb|EDR66575.1| putative methyltransferase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169751400|gb|ACA68918.1| putative RNA methylase [Yersinia pseudotuberculosis YPIII]
gi|229678890|gb|EEO74993.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Nepal516]
gi|229689846|gb|EEO81907.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697760|gb|EEO87807.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700797|gb|EEO88826.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Pestoides A]
gi|262365018|gb|ACY61575.1| hypothetical protein YPD8_0887 [Yersinia pestis D182038]
gi|270335421|gb|EFA46198.1| THUMP domain protein [Yersinia pestis KIM D27]
gi|294353864|gb|ADE64205.1| hypothetical protein YPZ3_1295 [Yersinia pestis Z176003]
gi|320015715|gb|ADV99286.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 706
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|319936304|ref|ZP_08010721.1| hypothetical protein HMPREF9488_01554 [Coprobacillus sp. 29_1]
gi|319808630|gb|EFW05178.1| hypothetical protein HMPREF9488_01554 [Coprobacillus sp. 29_1]
Length = 419
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTK-PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY 257
G +P + + + +K I+ DPF GSGT+ A + G E+
Sbjct: 35 HGMFKYPCKFIPEIPRWGIKKYSKKENTIVFDPFSGSGTTLLEANINGLNAYGTEIDDIA 94
Query: 258 ---IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
I + T R+ + Q ++ A +
Sbjct: 95 KLIIKVKTTRLDNNQINELDKIFEEIISIIYKEDAIAYI 133
>gi|229073309|ref|ZP_04206459.1| Modification methylase [Bacillus cereus F65185]
gi|228709816|gb|EEL61840.1| Modification methylase [Bacillus cereus F65185]
Length = 419
Score = 40.4 bits (93), Expect = 0.49, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYN 50
G+S+ +L+ + DLI PPY
Sbjct: 226 LGDSVEILKDYEKEQFDLICTSPPYG 251
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 204 HPTQKPEALLSRILVSSTKPGDI---ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+P + ++ + +LDPF GSG + +K L GI++ I
Sbjct: 33 YPATMVPDMQYELIKIIAEYDGNIINVLDPFHGSGVTLVESKSLGLRPYGIDINPLAHLI 92
Query: 261 ATKRIASVQP 270
++ V
Sbjct: 93 TKVKLEGVNK 102
>gi|183221205|ref|YP_001839201.1| hypothetical protein LEPBI_I1819 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911296|ref|YP_001962851.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775972|gb|ABZ94273.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167779627|gb|ABZ97925.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 393
Score = 40.4 bits (93), Expect = 0.49, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
+ +L +N + K K + + L+K+ + D I DPP
Sbjct: 252 EKNLELNGFSQELLAVKHKSLVMDCFDYLKKMDSGIYDCIILDPP 296
>gi|284173567|ref|ZP_06387536.1| hypothetical protein Ssol98_02775 [Sulfolobus solfataricus 98/2]
Length = 299
Score = 40.4 bits (93), Expect = 0.49, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 197 NKDGEKLHP---TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
++ +K T PE SR+LV+ ++P +LDPF G+G+ A+ L IG ++
Sbjct: 124 HEHEKKPFSQSGTMNPE--TSRLLVNLSRPKKEVLDPFVGTGSILIEARWLNYECIGSDL 181
Query: 254 KQDYIDIATKRIASVQPLGN 273
+ + + +
Sbjct: 182 DKAMLQKTKINLNYFNYYCS 201
>gi|326790887|ref|YP_004308708.1| methyltransferase [Clostridium lentocellum DSM 5427]
gi|326541651|gb|ADZ83510.1| methyltransferase [Clostridium lentocellum DSM 5427]
Length = 184
Score = 40.4 bits (93), Expect = 0.50, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY---NLQL 53
K++ + L++L + D+IF DPPY N+Q
Sbjct: 94 KVVASDVFEALKRLEGEQFDIIFMDPPYALENIQT 128
>gi|145298973|ref|YP_001141814.1| 23S rRNA m(2)G2445 methyltransferase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|229560164|sp|A4SME4|RLML_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|142851745|gb|ABO90066.1| putative RNA methylase [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 719
Score = 40.4 bits (93), Expect = 0.50, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N NS+ + K ++ + + L + DLIF DPP
Sbjct: 591 NMRLNSLVGRQHKFVQADCLKWLSE-ADDQYDLIFIDPP 628
>gi|18977247|ref|NP_578604.1| hypothetical protein PF0875 [Pyrococcus furiosus DSM 3638]
gi|18892912|gb|AAL80999.1| hypothetical protein PF0875 [Pyrococcus furiosus DSM 3638]
Length = 287
Score = 40.4 bits (93), Expect = 0.50, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 9 INENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPP 48
IN +F K+ KII+G++ V+++ +S +I DPP
Sbjct: 168 INPWSRELFTNKNIKIIQGDAFFVIKEFEDESFHVIIHDPP 208
>gi|326334708|ref|ZP_08200915.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325693158|gb|EGD35090.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 528
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 174 ANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQ--KPEALLSRILVSST---------K 222
E + +W + E K +LHP + L+ L T K
Sbjct: 70 WKEKLGDDLNWSLSFEQYKEAETTKHVHRLHPYKGKFIPQLVEYFLDGHTDAFKKEVFFK 129
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
GDI+LDPF GSGT+ A +L IG+++ + I
Sbjct: 130 AGDIVLDPFSGSGTTMVQASELGMHAIGVDVSAFNVLI 167
>gi|310287877|ref|YP_003939135.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bifidobacterium
bifidum S17]
gi|309251813|gb|ADO53561.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bifidobacterium
bifidum S17]
Length = 434
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
KPGD +LD G G A K +G+ + + I+ + I EL V+
Sbjct: 199 KPGDRMLDIGCGWGALVIAAAKRGIKALGVSLSHEQIEYGQEWIRREGLEDLAELRVMD- 257
Query: 282 KRTEPRVAFNLLVERGLIQ-PGQILT 306
R P F+ + G+++ G
Sbjct: 258 YREVPERDFDGITSVGMMEHVGAKNY 283
>gi|195542254|gb|ACF98330.1| hypothetical protein [Escherichia coli]
Length = 707
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ G ++LDPF GSGT+ A KL IG ++
Sbjct: 74 DIWESFYKIHDLAGKVVLDPFMGSGTTLGEAVKLGAKAIGCDINP 118
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 23/113 (20%)
Query: 22 KIIKGNSISVLEKLP--AKSVDLIFADPPY---------------NLQLNGQLYRPDHSL 64
I+ G+S KLP A +VD + DPPY L + +
Sbjct: 480 LIMNGDS----SKLPVPAGTVDAVVTDPPYFDFVHYSELSDFFFAWLSPALRNRYSWMAR 535
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
D+ + + + RVLK +G + S+H+ G
Sbjct: 536 EDSSDPGEVQHKDPLVFARQLASVFTEACRVLKDDGV--LAFSFHHSRAEGWA 586
>gi|75908409|ref|YP_322705.1| hypothetical protein Ava_2190 [Anabaena variabilis ATCC 29413]
gi|75702134|gb|ABA21810.1| Protein of unknown function DUF1156 [Anabaena variabilis ATCC
29413]
Length = 792
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E + IL S+ +LDPF G G+ A++L G ++ + I I +
Sbjct: 99 EKAKAEILKSTNNNPPPVLDPFCGGGSIPLEAQRLGLEAHGSDINPVAVLITKALIE-IP 157
Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGL 298
P + V R + +GL
Sbjct: 158 PKFANQPPVNPESRKKSLKTQKWFGAQGL 186
>gi|82703344|ref|YP_412910.1| hypothetical protein Nmul_A2226 [Nitrosospira multiformis ATCC
25196]
gi|82411409|gb|ABB75518.1| hypothetical protein Nmul_A2226 [Nitrosospira multiformis ATCC
25196]
Length = 467
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 34 KLPAKSVDLIFADPPYNLQLNG 55
KL VDL+ PPY
Sbjct: 286 KLQDNCVDLVITSPPYGSAQKY 307
>gi|113475788|ref|YP_721849.1| putative methyltransferase [Trichodesmium erythraeum IMS101]
gi|110166836|gb|ABG51376.1| putative methyltransferase [Trichodesmium erythraeum IMS101]
Length = 182
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
++++G+ + L+ L + DLI+ DPPY
Sbjct: 93 QVLRGDVLKRLKVLVGQKFDLIYFDPPY 120
>gi|295696240|ref|YP_003589478.1| protein of unknown function DUF548 [Bacillus tusciae DSM 2912]
gi|295411842|gb|ADG06334.1| protein of unknown function DUF548 [Bacillus tusciae DSM 2912]
Length = 267
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADP 47
++ G+ + L +LP +SVDL++ DP
Sbjct: 166 VVWGDHVDYLRRLPDRSVDLVYFDP 190
>gi|288574648|ref|ZP_06393005.1| methyltransferase small [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570389|gb|EFC91946.1| methyltransferase small [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 248
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 3 QKNSLAINENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYN------LQLN 54
Q+N + + E + E D++ I G+ + + LP + D++ A+PPY
Sbjct: 75 QENLVHMAEKNRELNELSDRVSFIHGDLREIHKILPPQGFDVVVANPPYGDPTRHRTGNR 134
Query: 55 GQLYRPDHSLVDAVTD-----SWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
+ H +V +V D + AY F L+ L+ G
Sbjct: 135 SENVLAKHGVVCSVEDVAEACRYLLGDKGRAYFVFAAERLVDLLCALRYRGV 186
>gi|168182634|ref|ZP_02617298.1| O-methyltransferase family protein [Clostridium botulinum Bf]
gi|237795994|ref|YP_002863546.1| O-methyltransferase family protein [Clostridium botulinum Ba4 str.
657]
gi|182674214|gb|EDT86175.1| O-methyltransferase family protein [Clostridium botulinum Bf]
gi|229261153|gb|ACQ52186.1| O-methyltransferase family protein [Clostridium botulinum Ba4 str.
657]
Length = 218
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ I +N+I ++ K KII+G+ + +L+ L D+IF D
Sbjct: 87 ERDDKMIEIAKNNIEKYSFKDKIKIIQGDCLEILKDLED-KYDMIFMD 133
>gi|15678751|ref|NP_275867.1| methyltransferase related protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3183225|sp|O26820|TMG10_METTH RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
Trm-G10; AltName: Full=tRNA:G10 dimethyltransferase
gi|2621813|gb|AAB85229.1| methyltransferase related protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 336
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 204 HPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+P L +R +V+ + K GD ILDPF G+G A + +G ++ ++
Sbjct: 167 YPGSMSPKL-ARCMVNLSGVKAGDRILDPFCGTGGILIEAGLMGVRVVGADIDWRMVEGT 225
Query: 262 TKRIASVQPLGNIELTVL 279
+ + +
Sbjct: 226 RENLQHYGITDFEVIRSD 243
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 26/89 (29%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
I +++ +I+ ++ L + VD I DPPY + +
Sbjct: 234 ITDFE--VIRSDARD-LR--LDEKVDAIVTDPPYGISASTA-----------------GE 271
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
S + Y F L + L G + +
Sbjct: 272 KSEKLYREF----LDSAHSNLAEGGMICM 296
>gi|297157198|gb|ADI06910.1| putative methyltransferase [Streptomyces bingchenggensis BCW-1]
Length = 281
Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+ G++++ L +L VDL+ ++PPY
Sbjct: 162 LHHGDALTALPEL-DGQVDLVISNPPY 187
>gi|205372118|ref|ZP_03224934.1| adenine specific DNA methylase [Bacillus coahuilensis m4-4]
Length = 230
Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEM------KQDYIDI 260
+ +I+ ++LDP+ GSGT+G +L R FI IE + +
Sbjct: 1 MKKIIQLWCPSEGLVLDPYAGSGTTGHAVLELNQETEAKRKFILIEQGNSEKGDKYARSL 60
Query: 261 ATKRIAS-VQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATV 316
+RI + + VL KR F + I +LT + + V
Sbjct: 61 TQERIRRVITGERPNQNGVLVQKRKPINSGFEFRILTKQIDASTVLTMKKDELVDLV 117
>gi|218667536|ref|YP_002425370.1| hypothetical protein AFE_0892 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218519749|gb|ACK80335.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 407
Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 23/108 (21%)
Query: 24 IKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I G+++ L L + DLI DPP + D AY
Sbjct: 278 IHGDAMETLHNLRDRGEQFDLIVLDPP-----------------ALIKSKKDFKEGSIAY 320
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F R+L P G L+ H++ R + Q D
Sbjct: 321 RRFN----DMAMRLLTPGGILFSASCSHHLSRETLLSQIAFAPQRGDY 364
>gi|89076235|ref|ZP_01162583.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium sp.
SKA34]
gi|89048064|gb|EAR53651.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium sp.
SKA34]
Length = 712
Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 28/139 (20%)
Query: 17 FEWKDKI------IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
E ++I ++ + + L+++ + DLIF DPP R +
Sbjct: 589 MELNNQIGPQHEYVQADCLQWLQEV-DDTFDLIFIDPP----TFSNSKRMKQT------- 636
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
F + +R+L+P+G ++ S + + + + +
Sbjct: 637 ----FDIQRDHIMLM----ENLKRMLRPDG--QIVFSNNKRQFKMDLDKINELGLQAKNI 686
Query: 131 WRKSNPMPNFRGRRFQNAH 149
K+ PM + ++ N
Sbjct: 687 SNKTLPMDFAKNKQIHNCW 705
>gi|269102658|ref|ZP_06155355.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268162556|gb|EEZ41052.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 680
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 26/146 (17%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K+++ +N + I+ + + L++ +S DLIF DPP R +
Sbjct: 554 KDNMKLNGQVGRQHNY----IQADCLQWLQE-SNESFDLIFIDPP----TFSNSKRMKQT 604
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
F + +R+L+P G + + L L
Sbjct: 605 -----------FDVQRDHIMLM----ENLKRMLRPEGQIVFSNNKRQFKMDLEALAELGL 649
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAH 149
N + K+ PM + ++ N
Sbjct: 650 QAKN--ISDKTLPMDFAKNKQIHNCW 673
>gi|168186822|ref|ZP_02621457.1| O-methyltransferase family protein [Clostridium botulinum C str.
Eklund]
gi|169295121|gb|EDS77254.1| O-methyltransferase family protein [Clostridium botulinum C str.
Eklund]
Length = 218
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFE--WKDKI--IKGNSISVLEKLPAKSVDLIFAD 46
+++ I+ +N+I + + +KI ++G+ + +L + + DLIF D
Sbjct: 87 ERDEKMIDIAKNNIKKYGFDNKINILQGDCLEILPSIEDE-FDLIFMD 133
>gi|153938794|ref|YP_001391853.1| O-methyltransferase family protein [Clostridium botulinum F str.
Langeland]
gi|152934690|gb|ABS40188.1| O-methyltransferase family protein [Clostridium botulinum F str.
Langeland]
gi|295319879|gb|ADG00257.1| O-methyltransferase family protein [Clostridium botulinum F str.
230613]
Length = 218
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ I +N+I ++ K KII+G+ + +L+ L D+IF D
Sbjct: 87 ERDDKMIEIAKNNIEKYSFKDKIKIIQGDCLEILKNLED-KYDMIFMD 133
>gi|148927504|ref|ZP_01810999.1| ParB domain protein nuclease [candidate division TM7 genomosp.
GTL1]
gi|147887151|gb|EDK72624.1| ParB domain protein nuclease [candidate division TM7 genomosp.
GTL1]
Length = 386
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 26/206 (12%), Positives = 54/206 (26%), Gaps = 16/206 (7%)
Query: 22 KIIKGNSI---SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA------VTDSW 72
+++ G+S + + K D+ DPPY L + ++
Sbjct: 169 RLMCGDSTIEADFAKLMNGKKADMCMTDPPYILDYLHAKRHGKPTTGFGAKRDRRYLEAD 228
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS--YHNIFRIGTMLQNLNFWILNDIV 130
+ F +F + ++LKP GTL I S + + + +
Sbjct: 229 EHFETFARTGDIYCLFYERGFQLLKPRGTLSFITSNKWMRSAYGEKLRSYFVNEVNPLWL 288
Query: 131 WRKSNPMPNFRGRRFQN-----AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWL 185
N +K ++ N ++ S
Sbjct: 289 IDFGGHQVFDSATVDTNILIAERASFQNKVKTCVVSKNFSRNNMSVYFRQHYSVATSLTA 348
Query: 186 IPICSGSERLRNKDGEKLHPTQKPEA 211
+ + +K+ KP
Sbjct: 349 KKGWVILNGVEDNIKKKIESAGKPLK 374
>gi|71893972|ref|YP_279418.1| DNA adenine methylase [Mycoplasma hyopneumoniae J]
gi|71852099|gb|AAZ44707.1| DNA adenine methylase [Mycoplasma hyopneumoniae J]
Length = 549
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 13/124 (10%)
Query: 11 ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+N N+I + ++ I N + +L D +F DPPY+ + + D
Sbjct: 148 KNLNNISSFLNENSIEIYNKNYLEILSLAKEN--DFVFIDPPYDSENDNSFTNYDR---- 201
Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWIL 126
+ W K + E D + + + + T V+ + +
Sbjct: 202 ---NGWKKQDTLELIDTLKKLNAKKVKWMFTNHSTSLVLNNLKEFSIFQIPVNRFINSNS 258
Query: 127 NDIV 130
D +
Sbjct: 259 QDRI 262
>gi|307317586|ref|ZP_07597025.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
gi|306896744|gb|EFN27491.1| DNA methylase N-4/N-6 domain protein [Sinorhizobium meliloti AK83]
Length = 270
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
L PG +ILDPF G G VA KL RS++GI++ I
Sbjct: 38 LCELAYRWFCPPGGLILDPFSGGSVRGIVASKLGRSYLGIDLSARQIAA 86
>gi|148657791|ref|YP_001277996.1| hypothetical protein RoseRS_3691 [Roseiflexus sp. RS-1]
gi|148569901|gb|ABQ92046.1| hypothetical protein RoseRS_3691 [Roseiflexus sp. RS-1]
Length = 313
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L+ IL I+LDPF G+GT+ V + + ++ + + + A
Sbjct: 36 LVQEILSHIAPQDAIVLDPFCGTGTTALVCAEKGITVDTTDINPFLLWLTKVKTAPYSSE 95
Query: 272 GNIELT 277
EL
Sbjct: 96 DIAELQ 101
>gi|314055178|ref|YP_004063516.1| site-specific DNA-methyltransferase [Ostreococcus tauri virus 2]
gi|313575069|emb|CBI70082.1| site-specific DNA-methyltransferase [Ostreococcus tauri virus 2]
Length = 341
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYN---LQLNG---QLYRPDH-----SLVDAVTDSWDKF 75
++ L +LP VDLI+ DPPYN N L + S V + W+K
Sbjct: 201 DACDFLRELP--KVDLIYLDPPYNQHPYGSNYFMLNLICTNERPHTVSKVSGIPGDWNKS 258
Query: 76 S 76
Sbjct: 259 Q 259
>gi|217967528|ref|YP_002353034.1| methyltransferase [Dictyoglomus turgidum DSM 6724]
gi|217336627|gb|ACK42420.1| methyltransferase [Dictyoglomus turgidum DSM 6724]
Length = 185
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
L +N + K K+I + L K P + D+IFADPPY
Sbjct: 82 KLLRENLKNLGIQEKTKVIYKDVFEFLNKTPEEKYDIIFADPPY 125
>gi|54308958|ref|YP_129978.1| 23S rRNA m(2)G2445 methyltransferase [Photobacterium profundum SS9]
gi|81828763|sp|Q6LRA0|RLML_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|46913388|emb|CAG20176.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
profundum SS9]
Length = 712
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+ + + I+ + + L+++ + DLIF DPP R +
Sbjct: 592 NNQVGDQHEFIQADCLQWLQEV-DDTFDLIFIDPP----TFSNSKRMKQT---------- 636
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F + +R+L+ +G + + L L N + K
Sbjct: 637 -FDIQRDHIMLM----ENLKRMLRTDGKIVFSNNKRQFKMDLEKLNELGLDAKN--ISDK 689
Query: 134 SNPMPNFRGRRFQNAH 149
+ PM + + N+
Sbjct: 690 TLPMDFAKNKHIHNSW 705
>gi|313201666|ref|YP_004040324.1| methyltransferase [Methylovorus sp. MP688]
gi|312440982|gb|ADQ85088.1| methyltransferase [Methylovorus sp. MP688]
Length = 197
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 23 IIKGNSISVLE----KLPAKSVDLIFADPPYNLQ 52
++ ++ +L KL A S D+IF DPPYN
Sbjct: 108 LLNADAAQLLSAPSAKLEAGSFDVIFLDPPYNQG 141
>gi|291460837|ref|ZP_06600217.1| type III restriction-modification system, methylase subunit
[Fusobacterium periodonticum ATCC 33693]
gi|291380429|gb|EFE87947.1| type III restriction-modification system, methylase subunit
[Fusobacterium periodonticum ATCC 33693]
Length = 272
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
+ E + D +K+ K L ++ K DIILD F GS T
Sbjct: 4 GFLPPKNIQNYSVGTIELKKIFDDKKIFEYPKSTEYLKYLVAIGVKIDDIILDFFSGSAT 63
Query: 237 SGAVAKK------LRRSFIGIEM 253
+ + R +I +++
Sbjct: 64 TAHSVMQLNAEDGGNRKYIMVQL 86
>gi|332162178|ref|YP_004298755.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|318606231|emb|CBY27729.1| 23s rRNA (guanine-N-2-)-methyltransferase rlmL [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325666408|gb|ADZ43052.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330860157|emb|CBX70478.1| ribosomal RNA large subunit methyltransferase L [Yersinia
enterocolitica W22703]
Length = 706
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S L + D+IF DPP
Sbjct: 591 HRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|238749740|ref|ZP_04611245.1| hypothetical protein yrohd0001_30600 [Yersinia rohdei ATCC 43380]
gi|238712395|gb|EEQ04608.1| hypothetical protein yrohd0001_30600 [Yersinia rohdei ATCC 43380]
Length = 631
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S L + D+IF DPP
Sbjct: 516 HRLIQADCLSWLSN-TDEQFDVIFIDPP 542
>gi|238757648|ref|ZP_04618832.1| hypothetical protein yaldo0001_19690 [Yersinia aldovae ATCC 35236]
gi|238704153|gb|EEP96686.1| hypothetical protein yaldo0001_19690 [Yersinia aldovae ATCC 35236]
Length = 706
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S L + D+IF DPP
Sbjct: 591 HRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|238763367|ref|ZP_04624331.1| hypothetical protein ykris0001_3230 [Yersinia kristensenii ATCC
33638]
gi|238698466|gb|EEP91219.1| hypothetical protein ykris0001_3230 [Yersinia kristensenii ATCC
33638]
Length = 706
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S L + D+IF DPP
Sbjct: 591 HRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|195568199|ref|XP_002102105.1| GD19733 [Drosophila simulans]
gi|194198032|gb|EDX11608.1| GD19733 [Drosophila simulans]
Length = 488
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+ + GD++ DPF G+G+ A K +G ++ + A R
Sbjct: 209 QAMVREGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVH-ARCR 254
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 39 SVDLIFADPPYNLQLNGQLYRPDHS-LVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
S D I DPPY ++ + S + ++S + S Y + L +
Sbjct: 300 SFDCIITDPPYGIREATEKVEKKASVKANTRSESMVHYPSTSHYSLQSLYGDLLEFSAKH 359
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
L+ G L +H+ ML
Sbjct: 360 LRLGGRLVCWIPFHSEDYDPKMLPQHKH 387
>gi|148380511|ref|YP_001255052.1| O-methyltransferase family protein [Clostridium botulinum A str.
ATCC 3502]
gi|153933640|ref|YP_001384798.1| O-methyltransferase family protein [Clostridium botulinum A str.
ATCC 19397]
gi|153937820|ref|YP_001388268.1| O-methyltransferase family protein [Clostridium botulinum A str.
Hall]
gi|148289995|emb|CAL84114.1| putative O-methyltransferase [Clostridium botulinum A str. ATCC
3502]
gi|152929684|gb|ABS35184.1| O-methyltransferase family protein [Clostridium botulinum A str.
ATCC 19397]
gi|152933734|gb|ABS39233.1| O-methyltransferase family protein [Clostridium botulinum A str.
Hall]
Length = 218
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ I +N+I ++ K KII+G+ + +L+ L D+IF D
Sbjct: 87 ERDDKMIEIAKNNIEKYSFKDKIKIIQGDCLEILKDLED-KYDMIFMD 133
>gi|238785947|ref|ZP_04629911.1| hypothetical protein yberc0001_25120 [Yersinia bercovieri ATCC
43970]
gi|238713137|gb|EEQ05185.1| hypothetical protein yberc0001_25120 [Yersinia bercovieri ATCC
43970]
Length = 706
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S L + D+IF DPP
Sbjct: 591 HRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|51595782|ref|YP_069973.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
IP 32953]
gi|153950189|ref|YP_001401517.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
IP 31758]
gi|81825864|sp|Q66CG1|RLML_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|229560198|sp|A7FJT9|RLML_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|51589064|emb|CAH20682.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|152961684|gb|ABS49145.1| putative methyltransferase [Yersinia pseudotuberculosis IP 31758]
Length = 706
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S L + D+IF DPP
Sbjct: 591 HRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|308186290|ref|YP_003930421.1| UPF0020/UPF0064 protein ycbY [Pantoea vagans C9-1]
gi|308056800|gb|ADO08972.1| UPF0020/UPF0064 protein ycbY [Pantoea vagans C9-1]
Length = 704
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++++ + +S L + ++ DLIF DPP
Sbjct: 590 HRLMQADCLSWLNE-SDENFDLIFIDPP 616
>gi|304372979|ref|YP_003856188.1| adenine DNA methyltransferase subunit [Mycoplasma hyorhinis HUB-1]
gi|304309170|gb|ADM21650.1| adenine DNA methyltransferase subunit [Mycoplasma hyorhinis HUB-1]
Length = 403
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIE 252
+ + KP L+ I+ +LD F GSGT+G + RSF+ +
Sbjct: 242 NFDSFFDFPKPVNLIKYIIDLFPSKNTRVLDFFAGSGTTGQAVLELNKEDGGNRSFVLVT 301
Query: 253 MKQDYI--DIATKRIASVQP 270
++ I ++ +R+ +
Sbjct: 302 NNENNIGQNVTYERLYRINK 321
>gi|326424050|ref|NP_761456.2| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Vibrio vulnificus
CMCP6]
gi|319999428|gb|AAO10983.2| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Vibrio vulnificus
CMCP6]
Length = 707
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
K + + + LEK DLIF DPP D F
Sbjct: 595 HKFEQADCLQWLEK-AQGQYDLIFIDPP---------------TFSNSKRMEDSFDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ NGT+ + + ++ L N + ++ P+
Sbjct: 639 HIKLM----KNLKRLLRENGTIVFSNNKRHFKMDMEEMEELGLDAKN--ISSQTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|268590130|ref|ZP_06124351.1| putative methylase [Providencia rettgeri DSM 1131]
gi|291314399|gb|EFE54852.1| putative methylase [Providencia rettgeri DSM 1131]
Length = 702
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + +S L + DLIF DPP R D + F
Sbjct: 590 HRLIQADCLSWLAN-SREQFDLIFIDPP----TFSNSKRMDGT-----------FDVQRD 633
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ + +R+L+ GT+ +
Sbjct: 634 HIQL----ITHLKRLLRRGGTVMFSNNKR 658
>gi|196229719|ref|ZP_03128583.1| D12 class N6 adenine-specific DNA methyltransferase [Chthoniobacter
flavus Ellin428]
gi|196226045|gb|EDY20551.1| D12 class N6 adenine-specific DNA methyltransferase [Chthoniobacter
flavus Ellin428]
Length = 396
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
+ +G+ VL ++ A DL + DPPY N + P A W
Sbjct: 226 HTVHRGDIFEVLPRIEA---DLAYFDPPY--GSNNEKMPPSRVRYAAYYHLW 272
>gi|168180555|ref|ZP_02615219.1| O-methyltransferase family protein [Clostridium botulinum NCTC
2916]
gi|182668563|gb|EDT80542.1| O-methyltransferase family protein [Clostridium botulinum NCTC
2916]
Length = 218
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ I +N+I ++ K KII+G+ + +L+ L D+IF D
Sbjct: 87 ERDDKMIEIAKNNIEKYSFKDKIKIIQGDCLEILKDLED-KYDMIFMD 133
>gi|312197427|ref|YP_004017488.1| DNA methylase N-4/N-6 domain protein [Frankia sp. EuI1c]
gi|311228763|gb|ADP81618.1| DNA methylase N-4/N-6 domain protein [Frankia sp. EuI1c]
Length = 376
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
K+ G+ L L + DL+ PPY
Sbjct: 218 KVYLGDCAETLSGL-RQRFDLVVTSPPY 244
Score = 39.6 bits (91), Expect = 0.69, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 204 HPTQKPEALLSRILVSSTKPG-DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+ T P + L + +PG +LDPF G GT+ A+ +GI++ IA
Sbjct: 25 YYTMFPLDFPLQHLAA--RPGISRVLDPFCGRGTTLYAARLAGVPAVGIDISPVAAAIAQ 82
Query: 263 KRIASVQPL 271
++ + P
Sbjct: 83 AKLIEITPR 91
>gi|225851286|ref|YP_002731520.1| hypothetical protein PERMA_1756 [Persephonella marina EX-H1]
gi|225645830|gb|ACO04016.1| conserved hypothetical protein [Persephonella marina EX-H1]
Length = 152
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 3 QKNSLAINENQNSIFEWK-D-KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+K+ + + + ++ + K+I ++I L+ ++ D+IFADPPY+
Sbjct: 53 EKDRKRAEQIKKKVSKYTQNFKVITADAIKFLKNYKKEAFDIIFADPPYD 102
>gi|94499138|ref|ZP_01305676.1| hypothetical protein RED65_10129 [Oceanobacter sp. RED65]
gi|94428770|gb|EAT13742.1| hypothetical protein RED65_10129 [Oceanobacter sp. RED65]
Length = 738
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPP 48
N I E I+ + + L+ + ++S DLIF DPP
Sbjct: 619 NGIAEKYHHFIQADCMQWLKDVQSESKRFDLIFMDPP 655
>gi|307273976|ref|ZP_07555186.1| hypothetical protein HMPREF9514_02718 [Enterococcus faecalis
TX0855]
gi|306509284|gb|EFM78344.1| hypothetical protein HMPREF9514_02718 [Enterococcus faecalis
TX0855]
Length = 248
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 11 ENQNSIFEWKD--KIIKGNSISVLEKLPAK---SVDLIFAD 46
EN N+ F+ + IIKGN++ L L V LI+ D
Sbjct: 167 ENVNTAFDIDNDNLIIKGNNLLALHSLLDNYAGKVKLIYID 207
>gi|296241883|ref|YP_003649370.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
gi|296094467|gb|ADG90418.1| putative RNA methylase [Thermosphaera aggregans DSM 11486]
Length = 355
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
I ++ + GD+I DPF G+GT +A + S IGIE+ + K + +
Sbjct: 198 INLARVREGDVIADPFAGTGTIPIIASAIGISSIGIELDWGLVHGMEKNLRYYKANAIPV 257
Query: 276 LTVLT 280
L T
Sbjct: 258 LGDST 262
>gi|224369619|ref|YP_002603783.1| hypothetical protein HRM2_25250 [Desulfobacterium autotrophicum
HRM2]
gi|223692336|gb|ACN15619.1| hypothetical protein HRM2_25250 [Desulfobacterium autotrophicum
HRM2]
Length = 479
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM-------KQD 256
P + P L++ L TKPGD++LDP G G V R ++ + +
Sbjct: 267 WPGRIPAQLVAHTLFYYTKPGDLVLDPMAGGGVVPDVCLIFERKCQAFDLATQENRPEIE 326
Query: 257 YIDIATKRIASVQPLGNIELTVLT 280
Y ++ +
Sbjct: 327 YHHWNPQKKKWPATKKPDLIFFDP 350
Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNG 100
DLIF DPPY + +++ K Y+ F RA+ L R K
Sbjct: 344 DLIFFDPPYFTKKKKAYKEKATRQTPSISSYKKK-----DYEQFFRAFFLLARENTKQTR 398
Query: 101 TLWVIGSYH 109
++ ++
Sbjct: 399 MAFLNADWY 407
>gi|196228304|ref|ZP_03127171.1| SAM-dependent methyltransferase-like protein [Chthoniobacter flavus
Ellin428]
gi|196227707|gb|EDY22210.1| SAM-dependent methyltransferase-like protein [Chthoniobacter flavus
Ellin428]
Length = 326
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
N + + K + + + VL +L + D+I DPP
Sbjct: 201 NGLDDSKHRFFADDVLDVLPRLARKNEKFDIIILDPP 237
>gi|260439323|ref|ZP_05793139.1| hypothetical protein BUTYVIB_02405 [Butyrivibrio crossotus DSM
2876]
gi|292808333|gb|EFF67538.1| hypothetical protein BUTYVIB_02405 [Butyrivibrio crossotus DSM
2876]
Length = 422
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNK---DGEKLHPTQKPEALLSRILVSSTKPG--- 224
+ N+ + D + ++ + + +P + P + S+ + G
Sbjct: 1 MITLNDGYDIDYDMINVDAEWNDSEKTELTMHTIHAYPAKFPAFIASKAFEYAKNEGVEI 60
Query: 225 DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
+ + D F G GT +K F G ++ IA + E
Sbjct: 61 NKVADIFCGCGTVALESKIHNYDFWGCDINPVATLIAKTKSCDYNIEKLEE 111
>gi|149918461|ref|ZP_01906951.1| hypothetical protein PPSIR1_36012 [Plesiocystis pacifica SIR-1]
gi|149820761|gb|EDM80171.1| hypothetical protein PPSIR1_36012 [Plesiocystis pacifica SIR-1]
Length = 358
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 27 NSISVLEKLP--AKSVDLIFADPPYNLQ--LNGQLYRPDHSLVDAVTDSWDKFSSFEA-- 80
+ LP S+D + DPPY Q +R A D++ +++A
Sbjct: 87 DCRE----LPYEDDSLDCVVLDPPYMEGFFRRSQTHRAGSGTHAAFRDAYADGRTYQADE 142
Query: 81 -----YDAFTRAWLL---ACRRVLKPNGTLWV 104
+DA T +L RRVLKP G L V
Sbjct: 143 GAPKWHDAVTDLYLRAGLEARRVLKPGGKLIV 174
>gi|123441881|ref|YP_001005864.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|229560197|sp|A1JMQ6|RLML_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|122088842|emb|CAL11648.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 706
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S L + D+IF DPP
Sbjct: 591 HRLIQADCLSWLSN-TDEQFDVIFIDPP 617
>gi|320533403|ref|ZP_08034091.1| hypothetical protein HMPREF9057_01975 [Actinomyces sp. oral taxon
171 str. F0337]
gi|320134381|gb|EFW26641.1| hypothetical protein HMPREF9057_01975 [Actinomyces sp. oral taxon
171 str. F0337]
Length = 454
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
L + + ++ DPF GSGT + F G ++ I +
Sbjct: 68 LRAVSPGSGLVYDPFAGSGTVMLESLYRGMDFHGSDINPLAILLCQ 113
>gi|198283142|ref|YP_002219463.1| methyltransferase small [Acidithiobacillus ferrooxidans ATCC 53993]
gi|198247663|gb|ACH83256.1| methyltransferase small [Acidithiobacillus ferrooxidans ATCC 53993]
Length = 407
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 23/108 (21%)
Query: 24 IKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
I G+++ L L + DLI DPP + D AY
Sbjct: 278 IHGDAMETLHNLRDRGEQFDLIVLDPP-----------------ALIKSKKDFKEGSIAY 320
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F R+L P G L+ H++ R + Q D
Sbjct: 321 RRFN----DMAMRLLTPGGILFSASCSHHLSRETLLSQIAFAAQRGDY 364
>gi|195343429|ref|XP_002038300.1| GM10758 [Drosophila sechellia]
gi|194133321|gb|EDW54837.1| GM10758 [Drosophila sechellia]
Length = 488
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+ + GD++ DPF G+G+ A K +G ++ + A R
Sbjct: 209 QAMVRKGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVH-ARCR 254
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 39 SVDLIFADPPYNLQLNGQLYRPDHS-LVDAVTDSWDKFSSFEAY--DAFTRAWLLACRRV 95
S D I DPPY ++ + S + ++S + S Y + L +
Sbjct: 300 SFDCIITDPPYGIREATEKVEKKASAKANTRSESMVHYPSTSHYSLQSLYGDLLEFSAKH 359
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
L+ G L +H+ ML
Sbjct: 360 LRLGGRLVCWIPFHSEDYDPKMLPQHQH 387
>gi|227830150|ref|YP_002831929.1| RNA methylase [Sulfolobus islandicus L.S.2.15]
gi|229578964|ref|YP_002837362.1| RNA methylase [Sulfolobus islandicus Y.G.57.14]
gi|229582283|ref|YP_002840682.1| putative RNA methylase [Sulfolobus islandicus Y.N.15.51]
gi|284997567|ref|YP_003419334.1| putative RNA methylase [Sulfolobus islandicus L.D.8.5]
gi|227456597|gb|ACP35284.1| putative RNA methylase [Sulfolobus islandicus L.S.2.15]
gi|228009678|gb|ACP45440.1| putative RNA methylase [Sulfolobus islandicus Y.G.57.14]
gi|228012999|gb|ACP48760.1| putative RNA methylase [Sulfolobus islandicus Y.N.15.51]
gi|284445462|gb|ADB86964.1| putative RNA methylase [Sulfolobus islandicus L.D.8.5]
Length = 312
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 198 KDGEKLHP---TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ +K T PE SR+LV+ +P +LDPF G+G+ A+ L IG ++
Sbjct: 138 EHEKKPFSQSGTMSPE--TSRLLVNLCRPKKEVLDPFVGTGSILIEARWLNYDCIGSDLD 195
Query: 255 QDYIDIATKRIASVQPLGN 273
+ + + N
Sbjct: 196 KTMLQKTKTNLNYFHYDCN 214
>gi|154149936|ref|YP_001403554.1| methyltransferase type 11 [Candidatus Methanoregula boonei 6A8]
gi|153998488|gb|ABS54911.1| Methyltransferase type 11 [Methanoregula boonei 6A8]
Length = 278
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 21/159 (13%)
Query: 211 ALLSRILV-SSTKPGDIILDPFFGSGTSGAV-AKKLRR--SFIGIEMKQDYIDIATKRIA 266
+ R+LV + PG +LD GSG + AK + + IGI+ ++IA RI
Sbjct: 31 DMTKRMLVDAGIGPGMHVLDVGCGSGDVSHLLAKLVGKEGHVIGIDRDGPSLEIARDRIR 90
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA-------- 318
+ + + + F+ V R +I +A ISAT+
Sbjct: 91 KLDLPNITFIQRDICELSPEPGQFDAAVARRVIMYLPEPVDAIRRISATLRPGGVVAFLE 150
Query: 319 -DGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
D T++ G + E NGW EK G
Sbjct: 151 HDNTMVPGRLK--------PLPLQEKVNGWIRKTIEKEG 181
>gi|87122427|ref|ZP_01078307.1| hypothetical protein MED121_19861 [Marinomonas sp. MED121]
gi|86162220|gb|EAQ63505.1| hypothetical protein MED121_19861 [Marinomonas sp. MED121]
Length = 401
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPD 61
+++L +N+ + + +++G++ ++ L D++ DPP + +
Sbjct: 261 ESNLTMNQYEGNAN-----LMQGDAFESMQSLIDDKQRFDVVVIDPPAFITRRKDTKAGE 315
Query: 62 HSLVDA 67
+ A
Sbjct: 316 SAYYRA 321
>gi|227508919|ref|ZP_03938968.1| possible type III modification methyltransferase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227191596|gb|EEI71663.1| possible type III modification methyltransferase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 256
Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRI 265
++S ++ ++LD F GSGT+ L R FI IEM+ + +R+
Sbjct: 1 MISYLIDLIKNKNAVVLDSFAGSGTTAEAVLNLNKRDGGERRFILIEMEDYAESVTAERV 60
Query: 266 AS 267
Sbjct: 61 KK 62
>gi|15605998|ref|NP_213375.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
gi|2983178|gb|AAC06779.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
Length = 380
Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 31/80 (38%)
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIEL 276
+ + K GD +LD F SG +G+++ + +++A + + L
Sbjct: 204 VRNLVKEGDRVLDLFCYSGGFSVYCANRGAKVVGVDINKRAVELARENAKLNSVKADFVL 263
Query: 277 TVLTGKRTEPRVAFNLLVER 296
E + ++L++
Sbjct: 264 GNAFDFIQESKEEWDLIIAD 283
>gi|170076656|ref|YP_001733294.1| methyltransferase, putative [Synechococcus sp. PCC 7002]
gi|169884325|gb|ACA98038.1| methyltransferase, putative [Synechococcus sp. PCC 7002]
Length = 179
Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+I+KG+ + LE L ++ DLI+ DPPY
Sbjct: 91 QILKGDLLKRLENLGGETFDLIYFDPPY 118
>gi|226949911|ref|YP_002805002.1| O-methyltransferase family protein [Clostridium botulinum A2 str.
Kyoto]
gi|226842590|gb|ACO85256.1| O-methyltransferase family protein [Clostridium botulinum A2 str.
Kyoto]
Length = 218
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ I +N+I ++ K KII+G+ + +L+ L D+IF D
Sbjct: 87 ERDDKMIEIAKNNIEKYSFKDKIKIIQGDCLEILKDLED-KYDMIFMD 133
>gi|148642412|ref|YP_001272925.1| DNA modification methylase [Methanobrevibacter smithii ATCC 35061]
gi|148551429|gb|ABQ86557.1| predicted DNA modification methylase [Methanobrevibacter smithii
ATCC 35061]
Length = 345
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
E ++ +P L +R +V+ + GD++LDPF G+G A + G
Sbjct: 162 EEIKPHKRPFFYPGSMSPKL-ARCMVNLSRVNSGDLVLDPFCGTGGILIEAGLIGCKVAG 220
Query: 251 IEMKQ----------DYIDIATKR 264
++ DY I R
Sbjct: 221 SDVNWKMKNGSAINLDYCGITDYR 244
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ VD + DPPY + + D + +D +AY
Sbjct: 257 EKVDSVVTDPPYGISTSTGDIEGDEIFNEFFHSIYDNMKD-DAYLCM 302
>gi|50084454|ref|YP_045964.1| 23S rRNA m(2)G2445 methyltransferase [Acinetobacter sp. ADP1]
gi|81613248|sp|Q6FCR7|RLML_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|49530430|emb|CAG68142.1| putative N-6 Adenine-specific DNA methylase [Acinetobacter sp.
ADP1]
Length = 734
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 20/151 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + L++ + DLIF DPP +
Sbjct: 604 SKENFVLNGLTVDHADEQHMFFASDCFEWLKE-GHEQYDLIFIDPP---------TFSNS 653
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S L L GTL+ +Y +
Sbjct: 654 KKFYGTFDIQRDHVSL----------LKRAMNRLSAEGTLYFSNNYRGFELDEEIDAIFY 703
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLI 153
+ + R ++ H +
Sbjct: 704 AQEITNDTIGPDFKRNQKIHRAWKIQHPHMN 734
>gi|300790092|ref|YP_003770383.1| CBS domain-containing protein [Amycolatopsis mediterranei U32]
gi|299799606|gb|ADJ49981.1| CBS domain-containing protein [Amycolatopsis mediterranei U32]
Length = 450
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 287 RVAFNLLVERGLIQPGQILTNAQGN----ISATVCADGTLI---SGTELGSIHRVGAKVS 339
RV L++ GL++ G L + ATV G + G E S R +
Sbjct: 15 RVTVPDLLDAGLLKAGAKLRFKRKRIGATFDATVTGTGRIRLEPDGEEFRSPSRAAMVAA 74
Query: 340 GSETCNGWNFWYFEKLGELHSINTLRILV 368
G +GW W L ++++R
Sbjct: 75 GMRAVDGWRAWVVVDEKRL--LDSVRQEF 101
>gi|289433164|ref|YP_003463037.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Dehalococcoides sp. GT]
gi|288946884|gb|ADC74581.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Dehalococcoides sp. GT]
Length = 418
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+P + + ++L + G ++ DP+ G+GTS A +G ++ IA
Sbjct: 30 YPARMIPQIAQQLLKLYSN-GGLLFDPYCGTGTSLVEAMTYGIDAVGTDINPLACLIARA 88
Query: 264 RIAS 267
+
Sbjct: 89 KTKM 92
>gi|270308672|ref|YP_003330730.1| adenine-specific DNA methylase [Dehalococcoides sp. VS]
gi|270154564|gb|ACZ62402.1| adenine-specific DNA methylase [Dehalococcoides sp. VS]
Length = 418
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+P + + ++L + G ++ DP+ G+GTS A +G ++ IA
Sbjct: 30 YPARMIPQIAQQLLKLYSN-GGLLFDPYCGTGTSLVEAMTYGIDAVGTDINPLACLIARA 88
Query: 264 RIAS 267
+
Sbjct: 89 KTKM 92
>gi|28210920|ref|NP_781864.1| methyltransferase [Clostridium tetani E88]
gi|28203359|gb|AAO35801.1| methyltransferase [Clostridium tetani E88]
Length = 185
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPY 49
+ SL +N FE K K + +S L L + DLIF DPPY
Sbjct: 73 FPKTYSLLETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEEFDLIFIDPPY 123
>gi|322806893|emb|CBZ04463.1| O-methyltransferase family protein [Clostridium botulinum H04402
065]
Length = 218
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ I +N+I ++ K KII+G+ + +L+ L D+IF D
Sbjct: 87 ERDDKMIEIAKNNIEKYSFKDKIKIIQGDCLEILKDL-DDKYDMIFMD 133
>gi|308229527|gb|ADO24178.1| M.AflIII [Anabaena flos-aquae CCAP 1403/13F]
Length = 440
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVL-EKLPAKSVDLIFADPPY 49
+++ + +N+ Q + + II GNS + L + +S+D + PPY
Sbjct: 238 KEDLIKLNQKQILFSNF-NSIIVGNSTNNLQNTIINRSIDFVITSPPY 284
Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
D ++DPF G GT+ +K +GIE+
Sbjct: 74 KDDFVVDPFSGRGTTVIECQKHGIKAMGIEINP 106
>gi|304397103|ref|ZP_07378982.1| putative RNA methylase [Pantoea sp. aB]
gi|304355252|gb|EFM19620.1| putative RNA methylase [Pantoea sp. aB]
Length = 704
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++++ + +S L + ++ DLIF DPP
Sbjct: 590 HRLMQADCLSWLNE-SDENFDLIFIDPP 616
>gi|160886781|ref|ZP_02067784.1| hypothetical protein BACOVA_04794 [Bacteroides ovatus ATCC 8483]
gi|156107192|gb|EDO08937.1| hypothetical protein BACOVA_04794 [Bacteroides ovatus ATCC 8483]
Length = 424
Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 187 PICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKK 243
+ER R +P + P + ++ + + + + D F G GT +
Sbjct: 21 EWNMPAERERRMHSIHAYPAKFPAFITTKAIHKAEEYNISVKTVADIFCGCGTVAFETVR 80
Query: 244 LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
+ F G ++ IA + Q ++
Sbjct: 81 SGKHFWGCDINPVATLIAETKSNVYQDKQLKDIFDQ 116
>gi|260578138|ref|ZP_05846059.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
gi|258603777|gb|EEW17033.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
Length = 695
Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 285 EPRVAFNLLVERGLIQPGQIL--TNAQGNISATVCADGTLISGTELGSIHRV-------- 334
+ VE GL++ G +L + + A V ADG ++ I+ V
Sbjct: 609 PKGRSLQEFVEAGLLREGDLLDPVDPDWVVDAVVTADGQVL-------INGVNTYESLDA 661
Query: 335 GAKVSGSETCNGWNFWYFEKLGELHSINTL 364
A+ G +G +FW + L ++ L
Sbjct: 662 AARALGVSNLSGEDFWALQDGNNLIPLSKL 691
>gi|222446090|ref|ZP_03608605.1| hypothetical protein METSMIALI_01739 [Methanobrevibacter smithii
DSM 2375]
gi|222435655|gb|EEE42820.1| hypothetical protein METSMIALI_01739 [Methanobrevibacter smithii
DSM 2375]
Length = 345
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
E ++ +P L +R +V+ + GD++LDPF G+G A + G
Sbjct: 162 EEIKPHKRPFFYPGSMSPKL-ARCMVNLSRVNSGDLVLDPFCGTGGILIEAGLIGCKVAG 220
Query: 251 IEMKQ----------DYIDIATKR 264
++ DY I R
Sbjct: 221 SDVNWKMKNGSAINLDYCGITDYR 244
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 38 KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLK 97
+ VD + DPPY + + D + +D +AY + ++K
Sbjct: 257 EKVDSVVTDPPYGISTSTGDIEGDEIFNEFFHSIYDNMKD-DAYLCMASPHYVDLNPMIK 315
Query: 98 PNGTLWV 104
G V
Sbjct: 316 EVGFELV 322
>gi|332141433|ref|YP_004427171.1| 23S rRNA m(2)G2445 methyltransferase [Alteromonas macleodii str.
'Deep ecotype']
gi|229560147|sp|B4RZ48|RLML_ALTMD RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|327551455|gb|AEA98173.1| 23S rRNA m(2)G2445 methyltransferase [Alteromonas macleodii str.
'Deep ecotype']
Length = 699
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 32/121 (26%)
Query: 1 MSQKNSLAINENQNSIFEW------KDKI------IKGNSISVLEKLPAKSVDLIFADPP 48
M S+ + N+ +W +K+ I+ + + L DLIF DPP
Sbjct: 557 MGGAKSVTTVDMSNTYLDWAKKNVALNKLSGPHAFIQADCTTWLGT-HKGKYDLIFIDPP 615
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
S + ++WD L + LK GT+ +
Sbjct: 616 ------------SFSNSKRMQNTWDVQRDH-------VKMLTDAKACLKEQGTIIFSNNK 656
Query: 109 H 109
Sbjct: 657 R 657
>gi|322832264|ref|YP_004212291.1| rRNA (guanine-N(2)-)-methyltransferase [Rahnella sp. Y9602]
gi|321167465|gb|ADW73164.1| rRNA (guanine-N(2)-)-methyltransferase [Rahnella sp. Y9602]
Length = 706
Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + + D+IF DPP
Sbjct: 580 NLRANDLTGRQHRLIQADCLSYL-GMCDEQFDVIFIDPP 617
>gi|313159329|gb|EFR58693.1| modification methylase BsoBI family protein [Alistipes sp. HGB5]
Length = 499
Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 208 KPEALLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM--KQDYIDIATKR 264
L+ +L + GDI+ DPF GSGT+ V+ + +G ++ A
Sbjct: 74 FSAELVRTLLKDFHLQKGDIVADPFMGSGTTALVSMFNGYNSLGFDILPMSKIAIHAKTA 133
Query: 265 IASVQPLGNIELTVLTGKRTEPRVAFNL 292
I + L EL P
Sbjct: 134 IYTYNTLELKELLKEIINLNVPEEYDGR 161
>gi|253688178|ref|YP_003017368.1| putative RNA methylase [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754756|gb|ACT12832.1| putative RNA methylase [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 705
Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 579 NLRVNGLTGRQHRLIQADCLSWLHN-ANEQFDVIFIDPP---------------TFSNSK 622
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + A +R+L+ GT+ +
Sbjct: 623 RMEESFDVQRDHLALM----KDLKRLLRRGGTIMFSNNKR 658
>gi|227111932|ref|ZP_03825588.1| 23S rRNA m(2)G2445 methyltransferase [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 705
Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 579 NLRVNGLTGRQHRLIQADCLSWLHN-ANEQFDVIFIDPP---------------TFSNSK 622
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + A +R+L+ GT+ +
Sbjct: 623 RMEESFDVQRDHLALM----KDLKRLLRRGGTIMFSNNKR 658
>gi|229819002|ref|YP_002880528.1| hypothetical protein Bcav_0503 [Beutenbergia cavernae DSM 12333]
gi|229564915|gb|ACQ78766.1| hypothetical protein Bcav_0503 [Beutenbergia cavernae DSM 12333]
Length = 277
Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 260 IATKRIASVQPLGNIELTVLTGKR-------TEPRVAFNLLVERGLIQPGQILTNAQGNI 312
+A R+A V + T R R L+ GL++ G + +QG
Sbjct: 151 LAALRLAGVDTHKEADELERTSPRGTRRKSPIAKRGTVADLLAAGLLRAGAEVHLSQGGR 210
Query: 313 SA--TVCADGTLI-SGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELH--SINTLRIL 367
+A TV G +I +G S + G + NGW W ++G+L +++ LR
Sbjct: 211 AASGTVTTSGEIIVAGVAYASPSTAAQQALGLRSSNGWTTW---RVGDLRGPTLDALRDR 267
Query: 368 V 368
+
Sbjct: 268 L 268
>gi|260798202|ref|XP_002594089.1| hypothetical protein BRAFLDRAFT_118790 [Branchiostoma floridae]
gi|229279322|gb|EEN50100.1| hypothetical protein BRAFLDRAFT_118790 [Branchiostoma floridae]
Length = 577
Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 65/222 (29%), Gaps = 17/222 (7%)
Query: 95 VLKPNGTLWV----IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ---- 146
LK +G + N R + ++ P+P G
Sbjct: 151 WLKDDGIFFFRESCFHRSGNRKRSFNPTNYRKPSDYDSLIQSAGIPIPGENGGVMHFGFE 210
Query: 147 ----NAHETLIWASPSPKAKGYTFNYDA--LKAANEDVQMRS--DWLIPICSGSERLRNK 198
+ ET I A + + A N + D +G R
Sbjct: 211 IQLAKSVETYIKAKKNVNQFCWVIKKRRLQGMAHNGYKTFQQFLDAQQYTRNGILRYEKI 270
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIEMKQDY 257
G T PE + +P +LD G G +AKK +++ +
Sbjct: 271 FGYGYVSTGGPETTEEFVARLDLQPDQHVLDVGCGIGGGDFYMAKKFGAVVTAMDLSTNM 330
Query: 258 IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
I+IAT+R + KR P F+++ R I
Sbjct: 331 IEIATERASQENITKVRFEISDCTKREYPAETFDVVYSRDTI 372
>gi|170757382|ref|YP_001782037.1| putative methyltransferase [Clostridium botulinum B1 str. Okra]
gi|169122594|gb|ACA46430.1| RNA methyltransferase, RsmD family [Clostridium botulinum B1 str.
Okra]
Length = 185
Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
+ L +N FE K ++ S LE+ KS+ DLIF DPPY
Sbjct: 74 PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFARKSIVFDLIFIDPPY 123
>gi|168212719|ref|ZP_02638344.1| type III restriction-modification system, Mod subunit [Clostridium
perfringens CPE str. F4969]
gi|170715804|gb|EDT27986.1| type III restriction-modification system, Mod subunit [Clostridium
perfringens CPE str. F4969]
Length = 145
Score = 40.0 bits (92), Expect = 0.68, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 11 ENQNSIFEWKDKIIKGNSISVLEKLPA---KSVDLIFA 45
E+ + ++ I+G+++ VL+ L + +I+
Sbjct: 92 EDSKNPETTQNLYIEGDNLEVLKLLKNSYYGKIKMIYI 129
>gi|330812165|ref|YP_004356627.1| methylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|327380273|gb|AEA71623.1| putative methylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 426
Score = 39.6 bits (91), Expect = 0.69, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 26 GNSISVLEKLP--AKSVDLIFADPPYNLQLNG 55
G+S +KLP +S+D + PPY +L+
Sbjct: 235 GDS----KKLPLDDESIDAVLTSPPYCTRLDY 262
>gi|300690399|ref|YP_003751394.1| ribosomal protein L11 methyltransferase [Ralstonia solanacearum
PSI07]
gi|299077459|emb|CBJ50084.1| Ribosomal protein L11 methyltransferase [Ralstonia solanacearum
PSI07]
Length = 298
Score = 39.6 bits (91), Expect = 0.69, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L +PG+ LD GSG VAKKL +G+++ + +
Sbjct: 145 GTGSHPT---TRLCMEWLEQHVQPGERTLDYGCGSGILAIVAKKLGTGETVGVDIDPNAV 201
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ + + + L P F+L+V L P L + A V
Sbjct: 202 EASRYNAERNRVEASFSLPD-----DAPEGPFDLVVANILSNP---LKLMAAMLCARVRP 253
Query: 319 DGTLI-SGTELGSIHRVGAKVSGS 341
G L+ SG V A +G+
Sbjct: 254 GGRLVLSGVLERQAEEVAAAYAGA 277
>gi|194016870|ref|ZP_03055483.1| YpiP [Bacillus pumilus ATCC 7061]
gi|194011476|gb|EDW21045.1| YpiP [Bacillus pumilus ATCC 7061]
Length = 262
Score = 39.6 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADP 47
+I G+SI L+K P S D+++ DP
Sbjct: 158 VISGDSIEQLKKYPDCSFDIVYFDP 182
>gi|116329264|ref|YP_798984.1| methylase of polypeptide chain release factors [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116122008|gb|ABJ80051.1| Methylase of polypeptide chain release factors [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
Length = 286
Score = 39.6 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 22 KII-KGNSISVLEK-----LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+II +GN+I LE +P +S DLI +PPY P + + D D
Sbjct: 163 QIIGEGNNIQFLESNLFLSIPKESEFDLIVTNPPY---------IPISDKTEMMKDVVDY 213
Query: 75 FSSFEAYD----AFTRAWLLACRRVLKPNGTLWV 104
+ F + R LK G ++
Sbjct: 214 EPHLALFLEDPKEFLSKLIEDARIHLKEGGKFYM 247
>gi|303287789|ref|XP_003063183.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
gi|226455015|gb|EEH52319.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
Length = 580
Score = 39.6 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
PG +LDPF G GT+ V R+ G+++ +A R
Sbjct: 167 PGRALLDPFAGGGTTLVVGMADGRATKGVDVSPLACAVAAHR 208
>gi|90410324|ref|ZP_01218340.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
profundum 3TCK]
gi|90328565|gb|EAS44849.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
profundum 3TCK]
Length = 712
Score = 39.6 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N+ + + I+ + + L+++ + DLIF DPP
Sbjct: 592 NNQVGDQHEFIQADCLQWLQEV-DDTFDLIFIDPP 625
>gi|326381662|ref|ZP_08203356.1| hypothetical protein SCNU_01905 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199909|gb|EGD57089.1| hypothetical protein SCNU_01905 [Gordonia neofelifaecis NRRL
B-59395]
Length = 698
Score = 39.6 bits (91), Expect = 0.72, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI---SATVCADGTLISGT 326
P G+ + + + V L++ GL+ PG+++ ++ A V A GTL
Sbjct: 595 PDGHTGTVLDPQSKPQEWVELKHLIDAGLLAPGEVVQPVSQDLAGTRAIVTAHGTLALDG 654
Query: 327 ELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
S NGW+FW + +L N LR
Sbjct: 655 REFSTPSGAGHHVRKRATNGWHFWVLDDGRKL---NDLRADF 693
>gi|217077465|ref|YP_002335183.1| putative methyltransferase [Thermosipho africanus TCF52B]
gi|217037320|gb|ACJ75842.1| putative methyltransferase [Thermosipho africanus TCF52B]
Length = 179
Score = 39.6 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 6 SLAINENQNSIFEWKD--KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
S+ E KD K+IK ++ L+ + D++F DPP+NL + +L
Sbjct: 75 SIKTIEKNAKNLNVKDNIKVIKKDARIFLKS-AKEKFDIVFMDPPFNLGIVNEL 127
>gi|332799408|ref|YP_004460907.1| methyltransferase [Tepidanaerobacter sp. Re1]
gi|332697143|gb|AEE91600.1| methyltransferase [Tepidanaerobacter sp. Re1]
Length = 179
Score = 39.6 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 3 QKNSLAINENQNSIFEWK----DKIIKGNSISVLEKL--PAKSVDLIFADPPY---NLQL 53
+KN +A + + ++ + K ++I+ + IS L+KL + D+IF DPPY N+
Sbjct: 71 EKNPIACSIIKQNLLDLKLIGKGRVIQSDVISALKKLILEGNNFDIIFMDPPYFKNNIGA 130
Query: 54 NGQLYRPDHS-----LVDAVTDSWDKFSSFE 79
+ + + ++ D KF F
Sbjct: 131 TLDVLKDFNVAESIIIIQHPKDELLKFDGFA 161
>gi|207092704|ref|ZP_03240491.1| putative RNA methylase [Helicobacter pylori HPKX_438_AG0C1]
Length = 379
Score = 39.6 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLE--KLPAKSVD-----LIFADPPYN--- 50
+S + + S+ + K I G+S+ +L+ L LI DPPY
Sbjct: 194 LSDRYKNIYMKANKSLDLKEQKFICGDSLELLKNNSLMQNLFKNELASLILIDPPYGDML 253
Query: 51 --LQLNGQLYRPDHSLVDAVTDSWDK--FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG 106
+ L + + T+ + +++ + + + + LK G L V
Sbjct: 254 SRPKTGETLKQKKDTSPTPFTNLKNDLGNMNWQEFLEKFKQSVEYSIKYLKKGGHLIVFI 313
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 7/126 (5%)
Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
K HP+ KP L+ I+ K ++ L G + + R IG ++ Y +I
Sbjct: 142 RKEHPSPKPPQLMRDIISFLQKRTNLCLIILLEWGGTLLGSSLCNRKAIGFDLSDRYKNI 201
Query: 261 ---ATKR--IASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNIS 313
A K + + + L +L + N L LI P G +L+ + +
Sbjct: 202 YMKANKSLDLKEQKFICGDSLELLKNNSLMQNLFKNELASLILIDPPYGDMLSRPKTGET 261
Query: 314 ATVCAD 319
D
Sbjct: 262 LKQKKD 267
>gi|331269721|ref|YP_004396213.1| O-methyltransferase, family 3 [Clostridium botulinum BKT015925]
gi|329126271|gb|AEB76216.1| O-methyltransferase, family 3 [Clostridium botulinum BKT015925]
Length = 218
Score = 39.6 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ I+ +N+I ++ K KI++G+ + +L + + DLIF D
Sbjct: 87 ERDENMISIAKNNIVKYGFNDKIKILQGDCLEILPTI-DEQFDLIFMD 133
>gi|242398459|ref|YP_002993883.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
sibiricus MM 739]
gi|242264852|gb|ACS89534.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
sibiricus MM 739]
Length = 338
Score = 39.6 bits (91), Expect = 0.75, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 205 PTQKPEALLSRILVSSTK---PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
P KP AL R+ + +LDPF G+G A L G+++++D +D A
Sbjct: 167 PFFKPIALPPRLARAMINLARAKKEVLDPFMGTGGILIEAGLLGLKVYGVDLRKDMVDGA 226
Query: 262 TKRIASV 268
+ +
Sbjct: 227 KQNLEHY 233
>gi|320546974|ref|ZP_08041275.1| hypothetical protein HMPREF0819_0681 [Streptococcus equinus ATCC
9812]
gi|320448376|gb|EFW89118.1| hypothetical protein HMPREF0819_0681 [Streptococcus equinus ATCC
9812]
Length = 249
Score = 39.6 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADP 47
Q NS ++N+ SI K I S++ L+KLP S D+++ DP
Sbjct: 137 QSNSESLNQAMRSI-----KTICAESLAYLKKLPNDSFDIVYCDP 176
>gi|242399628|ref|YP_002995053.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
gi|242266022|gb|ACS90704.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
Length = 363
Score = 39.6 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P L ++ + LDPF G GT + G + I A + + +
Sbjct: 174 PPRLARIMINLTEIRQGNFLDPFCGIGTIVQEFVLQGLNAYGSDSNPRAIHGAKENLKWL 233
Query: 269 QP 270
+
Sbjct: 234 KK 235
>gi|91786284|ref|YP_547236.1| hypothetical protein Bpro_0374 [Polaromonas sp. JS666]
gi|91695509|gb|ABE42338.1| hypothetical protein Bpro_0374 [Polaromonas sp. JS666]
Length = 146
Score = 39.6 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILV------SSTKPGDIILDPFFGSGTSGAVAKKLRRS 247
RL N+ ++HP P LL I + T ILDPF GSGT A
Sbjct: 19 RLGNQLTHQIHPY--PAKLLPHIAHFFARASTYTGKQGRILDPFCGSGTVALEASLAGHK 76
Query: 248 FIGIEMKQDY-----IDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
+ + + + ++ + L + RT P ++
Sbjct: 77 PLVADANPLALLITRVKTTPYNLEELRASLDSLLKRVVRYRTAPNISV 124
>gi|194337160|ref|YP_002018954.1| hypothetical protein Ppha_2132 [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309637|gb|ACF44337.1| conserved hypothetical protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 1118
Score = 39.6 bits (91), Expect = 0.77, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 25/128 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDH---- 62
KI+ +S L + + S+DL+ DPP+ L+L + PD+
Sbjct: 702 KILCSSSTD-LALVTSGSIDLVITDPPFGGLLHYSELSDFFYVWLRLALKDRYPDYFGTE 760
Query: 63 ---SLVDAVTDSWDKFSSFE-AYDAFTRAWLLACRRVLKPNGTL-WVIGSYHNIFRIGTM 117
++AV + + + Y R+LKP GTL + N + +
Sbjct: 761 YTPKSLEAVANKAREPEDSDGYYQRLLTQCWREAYRILKPGGTLAFTFHHSENNPWVAVL 820
Query: 118 LQNLNFWI 125
Sbjct: 821 ESLFGAGF 828
>gi|116492914|ref|YP_804649.1| N6-adenine-specific methylase [Pediococcus pentosaceus ATCC 25745]
gi|116103064|gb|ABJ68207.1| N6-adenine-specific methylase [Pediococcus pentosaceus ATCC 25745]
Length = 183
Score = 39.6 bits (91), Expect = 0.77, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G RL+ G K PT ++ G ++LD + GSG A
Sbjct: 8 FGGRRLKPVPGMKTRPTTDKIKENIFNIIGPYFDGGLVLDMYAGSGGLSIEAVSRGMDSA 67
Query: 250 G-IEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
I+ + I + + + E+ K+
Sbjct: 68 TLIDKQFAAIKTIKENVEVTKAKDRFEVIKGDSKK 102
>gi|168188108|ref|ZP_02622743.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
gi|169294056|gb|EDS76189.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
Length = 185
Score = 39.6 bits (91), Expect = 0.78, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 9 INENQNSIFEWKDKIIK--GNSISVLEKLPAKS--VDLIFADPPY---------NLQLNG 55
+ EN S+ ++++ I +S + L+ K DLIF DPPY ++
Sbjct: 80 LQENVKSL-RFENECICLNMDSYNALKSFANKKKIFDLIFIDPPYAKEMIPPAIDIVGKE 138
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEA 80
+L D +V + S + F +
Sbjct: 139 RLLYEDGLIVTKIDSSEEIFEGNDD 163
>gi|297196470|ref|ZP_06913868.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
gi|297153226|gb|EFH32221.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
gi|302607841|emb|CBW45752.1| N-methylase [Streptomyces pristinaespiralis]
Length = 292
Score = 39.6 bits (91), Expect = 0.79, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+I++G++ +L + +VDL+ +PPY
Sbjct: 170 RIVQGDARDAFPEL-SGTVDLVVTNPPY 196
>gi|294676500|ref|YP_003577115.1| cytosine-N(4)-specific DNA-methyltransferase [Rhodobacter
capsulatus SB 1003]
gi|294475320|gb|ADE84708.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Rhodobacter capsulatus SB 1003]
Length = 324
Score = 39.6 bits (91), Expect = 0.79, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
L PG +LDPF G G VA +L R ++GIE++ + +
Sbjct: 91 LCEIAYRWFCPPGGTVLDPFAGGSVRGIVAARLGRPYVGIELRAEQVAA 139
>gi|1575339|gb|AAC44869.1| PapM [Streptomyces pristinaespiralis]
Length = 292
Score = 39.6 bits (91), Expect = 0.79, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+I++G++ +L + +VDL+ +PPY
Sbjct: 170 RIVQGDARDAFPEL-SGTVDLVVTNPPY 196
>gi|326506428|dbj|BAJ86532.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 259
Score = 39.6 bits (91), Expect = 0.80, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVA-KKLRRSFIGIEMKQDYIDIATKRIASVQ 269
L I + K G +LD G G+ A K+ + G+ + A RI
Sbjct: 21 KLSLLINKAKVKRGHHVLDIGCGWGSLAIQAVKQTGCKYTGVTLSAQQHKYAE-RIVREA 79
Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTN 307
L + +L R P + ++ G+I+ G +
Sbjct: 80 GLEDHITFLLCDYRQIPPCKYGAIISCGMIEHVGHEYMD 118
>gi|168207690|ref|ZP_02633695.1| modification methylase StsI [Clostridium perfringens E str.
JGS1987]
gi|170660986|gb|EDT13669.1| modification methylase StsI [Clostridium perfringens E str.
JGS1987]
Length = 405
Score = 39.6 bits (91), Expect = 0.80, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
+ N ++I + ++I ++ ++ ++ A DL++ D PYN + G Y
Sbjct: 241 LLIPNVSTINDKDNRIYNMDANKLVREIEA---DLVYIDTPYNSRQYGDTY 288
>gi|298491107|ref|YP_003721284.1| methyltransferase ['Nostoc azollae' 0708]
gi|298233025|gb|ADI64161.1| methyltransferase ['Nostoc azollae' 0708]
Length = 195
Score = 39.6 bits (91), Expect = 0.81, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+I++GN + L+KL ++ D I+ DPPY + L
Sbjct: 93 QILRGNLLQQLKKLSSQKFDRIYFDPPYAIGL 124
>gi|291523886|emb|CBK89473.1| Putative RNA methylase family UPF0020 [Eubacterium rectale DSM
17629]
Length = 182
Score = 39.6 bits (91), Expect = 0.81, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 41/151 (27%), Gaps = 26/151 (17%)
Query: 22 KII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
KI GN+ L + +D I PPY + + AV D
Sbjct: 43 KIFTRNGNATD-LHFIKDSRIDFICTHPPYANIIKYSKGIEGDISLLAVDD--------- 92
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNI-------FRIGTMLQNLNFWILNDIVW 131
+ + + RVLK V IG FR+ F I+
Sbjct: 93 -FLSEMKKVAEESFRVLKKGKMCAVMIGDVRKYGKVIPLGFRMMECFLQAGFMNKEIIIK 151
Query: 132 RKSNPMPNFRGRRFQN-----AHETLIWASP 157
+ N N AHE +
Sbjct: 152 EQHNCCSTEYWETKNNNFLLLAHEYIFVFQK 182
>gi|187778911|ref|ZP_02995384.1| hypothetical protein CLOSPO_02506 [Clostridium sporogenes ATCC
15579]
gi|187772536|gb|EDU36338.1| hypothetical protein CLOSPO_02506 [Clostridium sporogenes ATCC
15579]
Length = 185
Score = 39.6 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSV--DLIFADPPY 49
+ L +N FE K ++ S LE+ KS+ DLIF DPPY
Sbjct: 74 PETYPLLRENIKNLKFEDLCKSFNMDAYSALEEFARKSIVFDLIFIDPPY 123
>gi|300870591|ref|YP_003785462.1| adenine-specific DNA methylase [Brachyspira pilosicoli 95/1000]
gi|300688290|gb|ADK30961.1| adenine-specific DNA methylase [Brachyspira pilosicoli 95/1000]
Length = 478
Score = 39.6 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+N+ K KI N I + +P S+DL+ PPY
Sbjct: 273 KNNNSNSKVKIFNNNVIDLFC-IPDSSIDLVITSPPYG 309
>gi|332159158|ref|YP_004424437.1| hypothetical protein PNA2_1518 [Pyrococcus sp. NA2]
gi|331034621|gb|AEC52433.1| hypothetical protein PNA2_1518 [Pyrococcus sp. NA2]
Length = 373
Score = 39.6 bits (91), Expect = 0.83, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P L ++ S +LDPF G+GT + G ++ ++ I + I +
Sbjct: 183 PPRLARIMVNLSEIRKGNVLDPFCGTGTILMELTLQGLNAYGSDINEERIRETRRNIEWL 242
Query: 269 Q 269
+
Sbjct: 243 K 243
>gi|325280573|ref|YP_004253115.1| hypothetical protein Odosp_1927 [Odoribacter splanchnicus DSM
20712]
gi|324312382|gb|ADY32935.1| Conserved hypothetical protein CHP00095 [Odoribacter splanchnicus
DSM 20712]
Length = 177
Score = 39.6 bits (91), Expect = 0.83, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
KI K + +KL + DLIFADPPY
Sbjct: 95 KIYKTDVFIACKKLKGRKFDLIFADPPY 122
>gi|326335108|ref|ZP_08201305.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692638|gb|EGD34580.1| modification methylase HindIII [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 63
Score = 39.6 bits (91), Expect = 0.84, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
KI + L +L +S+D + DPPY + + D + D+
Sbjct: 7 KIYNKSCY-GLSELENESIDALITDPPYGISYQNHYWDKDLPKREIWEDT 55
>gi|332521886|ref|ZP_08398334.1| DNA methylase N-4/N-6 domain protein [Lacinutrix algicola 5H-3-7-4]
gi|332042488|gb|EGI78691.1| DNA methylase N-4/N-6 domain protein [Lacinutrix algicola 5H-3-7-4]
Length = 415
Score = 39.6 bits (91), Expect = 0.85, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 204 HPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY---- 257
+P + +++ G + ILDP+ GSGT+ AK + IG ++
Sbjct: 31 YPAMMIPQIARKLIQDYKPKGKLENILDPYMGSGTTLVEAKIQGINAIGTDLNPLARFIS 90
Query: 258 -IDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
+ ++ + + + + V + +
Sbjct: 91 SVKTTNFNEGLIEKYFSKTINAIENYKRPQNVDLDHI 127
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ S+DL+ PPY + + W KF + + D
Sbjct: 239 IKEGSIDLVVTSPPY----GDSKTTVAYGQFSRWANEWFKFENAKKIDNLLM 286
>gi|170721460|ref|YP_001749148.1| adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Pseudomonas putida W619]
gi|169759463|gb|ACA72779.1| adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Pseudomonas putida W619]
Length = 651
Score = 39.6 bits (91), Expect = 0.86, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN------------------LQLNGQLYRPDHS 63
+I G++ L L + SVD++ DPPY L + G L R DH
Sbjct: 423 RIHLGSAR-ALSFLKSGSVDVVMTDPPYFDNIAYSELAQFFTPWLKALGVIGSLPR-DHV 480
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ +++ + S + + RVL+P G V SY +
Sbjct: 481 MSESLVARKHQPQSVQHFITGLGEAFAEIERVLRPKGV--VAFSYRH 525
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA-SVQPLGNIELT 277
++ G +LDPF G GTS A +L + G ++ ++ + + P L
Sbjct: 47 AADLQGLTVLDPFVGGGTSVFEAFRLGANVHGCDVDPVACAVSQLELDAADMPDLQPALE 106
Query: 278 VLTGKRTEPRVAF 290
L + + + F
Sbjct: 107 QLKARVGQKVLEF 119
>gi|47205450|emb|CAF93621.1| unnamed protein product [Tetraodon nigroviridis]
Length = 321
Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 61/185 (32%), Gaps = 16/185 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
K + G+ + + V + PP+ + ++ + D D + + Y
Sbjct: 91 KFVLGDGGVRIRAILVGKVKM----PPFPIPPAEKVVHQKQYRIPGGHD--DIGKTIKEY 144
Query: 82 DA------FTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSN 135
T W V KP+G+ + Y + + L + + + + +
Sbjct: 145 VEAGVLRSTTMQWNNPIWPVKKPDGSWRMTVDYRELNKHTPPLTSAVPDAIPIVEQVQHH 204
Query: 136 PMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERL 195
P + NA T+ P P+ + ++ ++ + C+ SER+
Sbjct: 205 PGTWYGVFDLANAFFTI----PIPRDRRTDGVWENGYLTPKNRTNAHPTIFGHCNPSERM 260
Query: 196 RNKDG 200
+G
Sbjct: 261 DPGNG 265
>gi|187778858|ref|ZP_02995331.1| hypothetical protein CLOSPO_02453 [Clostridium sporogenes ATCC
15579]
gi|187772483|gb|EDU36285.1| hypothetical protein CLOSPO_02453 [Clostridium sporogenes ATCC
15579]
Length = 218
Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFAD 46
KII G+ + +L+ L D+IF D
Sbjct: 110 KIIHGDCLEILKDL-DDKYDMIFMD 133
>gi|89900458|ref|YP_522929.1| hypothetical protein Rfer_1668 [Rhodoferax ferrireducens T118]
gi|89345195|gb|ABD69398.1| conserved hypothetical protein 95 [Rhodoferax ferrireducens T118]
Length = 220
Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
+I++G+ ++ L+ L S+D +F DPP++
Sbjct: 130 QIVRGDGLAALKHLDPASMDAVFLDPPFDS 159
>gi|94984393|ref|YP_603757.1| hypothetical protein Dgeo_0285 [Deinococcus geothermalis DSM 11300]
gi|94554674|gb|ABF44588.1| SAM-dependent methyltransferase, rRNA adenine N-6-methyltransferase
family [Deinococcus geothermalis DSM 11300]
Length = 191
Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+I++G+++ +L +L S D++F+DPPY
Sbjct: 104 RILRGDALGLLPRL--GSFDVVFSDPPY 129
>gi|17232840|ref|NP_489388.1| hypothetical protein alr5348 [Nostoc sp. PCC 7120]
gi|17134487|dbj|BAB77047.1| alr5348 [Nostoc sp. PCC 7120]
Length = 447
Score = 39.3 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E +++ ++ T P ++ PF G G +++ R + + + R
Sbjct: 371 EGIVNYLINLYTNPNHFVIAPFIGHGEILVTCERMGRICFIGDSNAELVSRGIGRWQKWT 430
Query: 270 PLGNIELTVLTGKRTE 285
I+ K +
Sbjct: 431 SKKAIKSVASETKIKK 446
>gi|163756357|ref|ZP_02163471.1| hypothetical protein KAOT1_01874 [Kordia algicida OT-1]
gi|161323709|gb|EDP95044.1| hypothetical protein KAOT1_01874 [Kordia algicida OT-1]
Length = 430
Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 6 SLAINENQNSIFEW--KDKIIKGNSISVLEKLPA--KSVDLIFADPP 48
+L I ++ + E+ K II G++ L L + D++ DPP
Sbjct: 292 ALEIAKSNAKLNEFSGKHNIIVGDAFEELNHLAKAKQKFDIVVIDPP 338
>gi|227827457|ref|YP_002829236.1| RNA methylase [Sulfolobus islandicus M.14.25]
gi|229584672|ref|YP_002843173.1| RNA methylase [Sulfolobus islandicus M.16.27]
gi|238619613|ref|YP_002914438.1| putative RNA methylase [Sulfolobus islandicus M.16.4]
gi|227459252|gb|ACP37938.1| putative RNA methylase [Sulfolobus islandicus M.14.25]
gi|228019721|gb|ACP55128.1| putative RNA methylase [Sulfolobus islandicus M.16.27]
gi|238380682|gb|ACR41770.1| putative RNA methylase [Sulfolobus islandicus M.16.4]
Length = 312
Score = 39.3 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 198 KDGEKLHP---TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
+ +K T PE SR+LV+ ++P +LDPF G+G+ A+ L+ IG ++
Sbjct: 138 EHEKKPFSQSGTMSPE--TSRLLVNLSRPKKEVLDPFVGTGSILIEARWLKYDCIGSDLD 195
Query: 255 QDYIDIATKRIASVQPLGN 273
+ + + N
Sbjct: 196 KTMLQKTKTNLNYFNYDCN 214
>gi|160933338|ref|ZP_02080726.1| hypothetical protein CLOLEP_02183 [Clostridium leptum DSM 753]
gi|156867215|gb|EDO60587.1| hypothetical protein CLOLEP_02183 [Clostridium leptum DSM 753]
Length = 210
Score = 39.3 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+++ +S++ L + P DL F DPPY L
Sbjct: 121 RVVNMDSLAFLSQ-PNGKFDLAFLDPPYRTGL 151
>gi|70607048|ref|YP_255918.1| RNA methylase [Sulfolobus acidocaldarius DSM 639]
gi|68567696|gb|AAY80625.1| RNA methylase [Sulfolobus acidocaldarius DSM 639]
Length = 301
Score = 39.3 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
R++++ ++ +LDPF G+GT A L IGI++ + I +
Sbjct: 151 RLMINLSRSRSNVLDPFVGTGTILIEANWLGLKCIGIDIDEQMIKNTKINLDYFHYECE 209
>gi|225572198|ref|ZP_03781062.1| hypothetical protein RUMHYD_00492 [Blautia hydrogenotrophica DSM
10507]
gi|225040370|gb|EEG50616.1| hypothetical protein RUMHYD_00492 [Blautia hydrogenotrophica DSM
10507]
Length = 183
Score = 39.3 bits (90), Expect = 0.94, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 22 KIIKGNSISVLEKLPAKS-VDLIFADPPYNLQLN 54
++IK + L +L + D IF DPPY L
Sbjct: 94 RVIKTDVFQGLRQLEGEKPFDCIFMDPPYGKGLE 127
>gi|254483404|ref|ZP_05096634.1| Putative RNA methylase family UPF0020 [marine gamma proteobacterium
HTCC2148]
gi|214036388|gb|EEB77065.1| Putative RNA methylase family UPF0020 [marine gamma proteobacterium
HTCC2148]
Length = 579
Score = 39.3 bits (90), Expect = 0.94, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 20/137 (14%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
N + E +I++ N + LEK S DLI DPP S + +S+
Sbjct: 462 HNGLGESHHEIVRANCLQWLEK-DEGSYDLILLDPP------------SFSNSKNMDESF 508
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
D A L+P G L+ + ++ Q + + +
Sbjct: 509 DVQRDHAELV-------RAAMSHLRPGGVLYFSNNRRGFKLDESLQQVFSCKDITNATLD 561
Query: 133 KSNPMPNFRGRRFQNAH 149
+ ++ AH
Sbjct: 562 QDFQRNRKVHCCWEIAH 578
>gi|307331758|ref|ZP_07610861.1| DNA methylase N-4/N-6 [Streptomyces violaceusniger Tu 4113]
gi|306882571|gb|EFN13654.1| DNA methylase N-4/N-6 [Streptomyces violaceusniger Tu 4113]
Length = 60
Score = 39.3 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 200 GEKLHPTQKPEALLSRI-LVSSTKPGDIILDPFFGSGTSGAV 240
+ H PE L + ++ P I+LDPF G+GT+ A+
Sbjct: 16 EDARHFAAMPETLTQHLPILGYAPPLGIVLDPFGGTGTTTAM 57
>gi|113869127|ref|YP_727616.1| ribosomal protein L11 methyltransferase [Ralstonia eutropha H16]
gi|123032690|sp|Q0K6X3|PRMA_RALEH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|113527903|emb|CAJ94248.1| Ribosomal protein L11 methyltransferase [Ralstonia eutropha H16]
Length = 300
Score = 39.3 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 12/125 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L + L + KPG+ +LD GSG VA+KL +GI++ + +
Sbjct: 145 GTGSHPT---TRLCMQWLEQNLKPGETVLDYGCGSGILAIVARKLGAGDTVGIDIDPNAV 201
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ + R + + + + ++ + +SA V A
Sbjct: 202 EAS--RYNAERNRVEASFALPESVSEASYDLVVANILSNPLKLMAAM------LSARVRA 253
Query: 319 DGTLI 323
G L+
Sbjct: 254 GGRLV 258
>gi|73542072|ref|YP_296592.1| hypothetical protein Reut_A2386 [Ralstonia eutropha JMP134]
gi|72119485|gb|AAZ61748.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
Length = 459
Score = 39.3 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL 271
L ++LDPF G G VA +L R ++G+E++ + ++ ++ VQ
Sbjct: 228 LCELAYRWFCPADGLVLDPFAGGSVRGIVAARLGRPYVGMELRPEQVEANRGQLHLVQTH 287
Query: 272 GN 273
Sbjct: 288 DP 289
>gi|328885060|emb|CCA58299.1| Methylase of polypeptide chain release factors [Streptomyces
venezuelae ATCC 10712]
Length = 281
Score = 39.3 bits (90), Expect = 0.96, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ +G+++S L +L VDL+ ++PPY
Sbjct: 161 TVHQGDALSALPEL-DGQVDLVISNPPY 187
>gi|256826049|ref|YP_003150009.1| hypothetical protein Ksed_22640 [Kytococcus sedentarius DSM 20547]
gi|256689442|gb|ACV07244.1| uncharacterized conserved protein [Kytococcus sedentarius DSM
20547]
Length = 695
Score = 39.3 bits (90), Expect = 0.96, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 5/104 (4%)
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNI--SATVCADGTLIS 324
P G+ R + LV GL+QPG LT + + +A V +G L
Sbjct: 594 WPAPEGHEPTVGGEVTREHNSASVRDLVAAGLLQPGTRLTFRRRSDLPAAVVTEEGKLHV 653
Query: 325 GTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILV 368
+ + + + CNGW W LH +R +
Sbjct: 654 NGQDHTAPSAAGRAASGRGCNGWWEWRLPDGRRLH---EVRDQL 694
>gi|254382316|ref|ZP_04997676.1| methyltransferase [Streptomyces sp. Mg1]
gi|194341221|gb|EDX22187.1| methyltransferase [Streptomyces sp. Mg1]
Length = 281
Score = 39.3 bits (90), Expect = 0.96, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ +G+++S L +L VDL+ ++PPY
Sbjct: 161 TVHQGDALSALPEL-DGQVDLVISNPPY 187
>gi|302536944|ref|ZP_07289286.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces sp. C]
gi|302445839|gb|EFL17655.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces sp. C]
Length = 281
Score = 39.3 bits (90), Expect = 0.99, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ +G++++ L +L VDL+ ++PPY
Sbjct: 161 TVHQGDALTALPEL-DGQVDLVISNPPY 187
>gi|305662452|ref|YP_003858740.1| putative RNA methylase [Ignisphaera aggregans DSM 17230]
gi|304377021|gb|ADM26860.1| putative RNA methylase [Ignisphaera aggregans DSM 17230]
Length = 343
Score = 39.3 bits (90), Expect = 1.00, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 206 TQKPE--ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
T KP LL + ST+ D ILDPF G G A + ++ +
Sbjct: 170 TMKPVLARLLINLAKISTERHDTILDPFCGVGGIAIEACLMGFRVYCSDIDMRMV 224
>gi|17548791|ref|NP_522131.1| hypothetical protein RS06032 [Ralstonia solanacearum GMI1000]
gi|17431040|emb|CAD17721.1| hypothetical protein RSp0570 [Ralstonia solanacearum GMI1000]
Length = 222
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 20 KDKIIKGNSISVL---EKLPAKSVDLIFADPPYNLQ 52
+ +++ G++ L + D++F DPPYN+
Sbjct: 187 RHRLLCGDATVAENYGRLLQGEPADMVFTDPPYNVN 222
>gi|311693351|gb|ADP96224.1| SAM-dependent methyltransferase [marine bacterium HP15]
Length = 401
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 24 IKGNSISVLEKLPA--KSVDLIFADPP 48
I+G++ L+ L + D++ DPP
Sbjct: 277 IEGDAFEALKALADEKEKFDVVVLDPP 303
>gi|73542552|ref|YP_297072.1| ribosomal protein L11 methyltransferase [Ralstonia eutropha JMP134]
gi|123624111|sp|Q46XA5|PRMA_RALEJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|72119965|gb|AAZ62228.1| LSU ribosomal protein L11P methyltransferase [Ralstonia eutropha
JMP134]
Length = 297
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L + L + K G+ +LD GSG VAKKL +GI++ + +
Sbjct: 145 GTGSHPT---TRLCMQWLEQNLKAGETVLDYGCGSGILAIVAKKLGAGDTLGIDIDPNAV 201
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ + Q + L + T LV ++ L +SA V A
Sbjct: 202 EASRYNAERNQVQADFALPESVSEATY------DLVVANILS--NPLKLMAAMLSARVRA 253
Query: 319 DGTLI 323
G LI
Sbjct: 254 GGRLI 258
>gi|156740095|ref|YP_001430224.1| hypothetical protein Rcas_0068 [Roseiflexus castenholzii DSM 13941]
gi|156231423|gb|ABU56206.1| hypothetical protein Rcas_0068 [Roseiflexus castenholzii DSM 13941]
Length = 464
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
+LDPF G GT+ + + GIE+ + + ++ + L+ + E
Sbjct: 66 HVLDPFAGIGTTLVESLRRGYHVTGIEINPFAALASRVKCSAFTIEPDTLLSAIRTFERE 125
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 22 KIIKGNSISVLEKL-PAKSVDLIFADPPY 49
++I+G+S ++ ++ SVD++ PPY
Sbjct: 260 RVIEGDSR-LMPQMVKESSVDIVITSPPY 287
>gi|71278744|ref|YP_269961.1| 23S rRNA m(2)G2445 methyltransferase [Colwellia psychrerythraea
34H]
gi|123631813|sp|Q47Z09|RLML_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|71144484|gb|AAZ24957.1| putative RNA methylase, family UPF0020 [Colwellia psychrerythraea
34H]
Length = 715
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 42/165 (25%), Gaps = 40/165 (24%)
Query: 6 SLAINENQNSIFEW------KDKI-------IKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
S+ + N+ W +K+ I+ + + L+K D+IF DPP
Sbjct: 574 SITTVDMSNTYLNWAEDNFALNKLNGHKYQFIQADCLDWLKK-NVNKFDVIFIDPP---- 628
Query: 53 LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
D F + L L G ++ + N
Sbjct: 629 -----------TFSNSKRMEDSFDVQRDHVDLITDALK----SLNRGGEIFFTNNKRNFK 673
Query: 113 RIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
L L ++ +N H W+
Sbjct: 674 IDFEALDELGL-------TAEAMSDVTRDKDFARNKHIHNSWSIK 711
>gi|301165961|emb|CBW25535.1| putative methyltransferase [Bacteriovorax marinus SJ]
Length = 299
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
+ L + LI ++PPY + + + VD + ++YD + R
Sbjct: 186 CTDRMNDLDQEKFHLIVSNPPYIKKREDRDFVHHQ--VDNYEPHLALYLEDDSYDEWFRT 243
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
L G + G ++ + + + F
Sbjct: 244 LFKQVLNSLYEEGIFIMEGHEDHLEDLCEVCNMIGF 279
>gi|110798639|ref|YP_696458.1| O-methyltransferase family protein [Clostridium perfringens ATCC
13124]
gi|168207860|ref|ZP_02633865.1| O-methyltransferase family protein [Clostridium perfringens E str.
JGS1987]
gi|168211397|ref|ZP_02637022.1| O-methyltransferase family protein [Clostridium perfringens B str.
ATCC 3626]
gi|168214249|ref|ZP_02639874.1| O-methyltransferase family protein [Clostridium perfringens CPE
str. F4969]
gi|168218249|ref|ZP_02643874.1| O-methyltransferase family protein [Clostridium perfringens NCTC
8239]
gi|182625696|ref|ZP_02953465.1| O-methyltransferase family protein [Clostridium perfringens D str.
JGS1721]
gi|110673286|gb|ABG82273.1| O-methyltransferase family protein [Clostridium perfringens ATCC
13124]
gi|170660821|gb|EDT13504.1| O-methyltransferase family protein [Clostridium perfringens E str.
JGS1987]
gi|170710659|gb|EDT22841.1| O-methyltransferase family protein [Clostridium perfringens B str.
ATCC 3626]
gi|170714328|gb|EDT26510.1| O-methyltransferase family protein [Clostridium perfringens CPE
str. F4969]
gi|177909098|gb|EDT71573.1| O-methyltransferase family protein [Clostridium perfringens D str.
JGS1721]
gi|182379734|gb|EDT77213.1| O-methyltransferase family protein [Clostridium perfringens NCTC
8239]
Length = 214
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
N N + + E + I++G+ + VLE L + D+IF D
Sbjct: 94 NYAKENIKKFGLEEKIN-ILQGDCLEVLESLHDE-FDMIFMD 133
>gi|320100787|ref|YP_004176379.1| RNA methylase [Desulfurococcus mucosus DSM 2162]
gi|319753139|gb|ADV64897.1| RNA methylase [Desulfurococcus mucosus DSM 2162]
Length = 336
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
I ++ + G I+LDPF G+GT A + +GIE+
Sbjct: 177 INLARVREGGILLDPFAGTGTILMEAWSMNIRAVGIEVDW 216
>gi|327488511|sp|Q9UY84|TMG10_PYRAB RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
Trm-G10; AltName: Full=(Pab)Trm-G10; AltName:
Full=tRNA:G10 dimethyltransferase
Length = 329
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 194 RLRNKDGEKL--HPTQKPEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
R + D K P +P AL RI +V+ T+ ILDPF G+G A +
Sbjct: 145 RGKEFDERKADRRPFSRPIALPPRIARAMVNLTRATREILDPFMGTGGMLIEAGLMGLKV 204
Query: 249 IGIEMKQDYIDIATKRIASV 268
GI++++D ++ A +
Sbjct: 205 YGIDIREDMVEGAKINLEYY 224
>gi|313844064|ref|YP_004061727.1| hypothetical protein OlV1_094 [Ostreococcus lucimarinus virus OlV1]
gi|312599449|gb|ADQ91471.1| hypothetical protein OlV1_094 [Ostreococcus lucimarinus virus OlV1]
Length = 341
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH-----------SLVDAVTDS 71
+ + ++ L LP VDLI+ DPPYN G Y + S V +
Sbjct: 197 VYRQDACDFLRDLP--KVDLIYLDPPYNQHPYGSNYFMLNLICTNERPHTLSKVSGIPGD 254
Query: 72 WDKFS 76
W+K
Sbjct: 255 WNKSQ 259
>gi|311064757|ref|YP_003971482.1| cyclopropane-fatty-acyl-phospholipid synthase [Bifidobacterium
bifidum PRL2010]
gi|313141015|ref|ZP_07803208.1| cyclopropane-fatty-acyl-phospholipid synthase [Bifidobacterium
bifidum NCIMB 41171]
gi|310867076|gb|ADP36445.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bifidobacterium
bifidum PRL2010]
gi|313133525|gb|EFR51142.1| cyclopropane-fatty-acyl-phospholipid synthase [Bifidobacterium
bifidum NCIMB 41171]
Length = 434
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
KPGD +LD G G A K +G+ + + I+ + I EL V+
Sbjct: 199 KPGDRMLDIGCGWGALVIAAAKRGIKALGVSLSHEQIEYGQEWIRREGLENLAELRVMD- 257
Query: 282 KRTEPRVAFNLLVERGLIQ-PGQILT 306
R P F+ + G+++ G
Sbjct: 258 YREVPERDFDGITSVGMMEHVGAKNY 283
>gi|192362123|ref|YP_001982061.1| type III restriction-modification system methyltransferase
[Cellvibrio japonicus Ueda107]
gi|190688288|gb|ACE85966.1| type III restriction-modification system methyltransferase
[Cellvibrio japonicus Ueda107]
Length = 278
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 15/132 (11%)
Query: 201 EKLHPTQKPEALLSRILV-SSTKPGDIILDPFFGSGTSGAVAKK------LRRSFIGIEM 253
KP L+ ++ S + DIILD F GS T+ + R FI +++
Sbjct: 29 NIPFDYSKPSTLIKYLMEVSKVRNNDIILDFFAGSATTAHAVMQLNAEDNGNRRFIMVQL 88
Query: 254 ------KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
+ IA + IEL K P + L + L
Sbjct: 89 PEPTPEDSEARKAGFNTIADIS-RKRIELAGAKIKADSPLITQALDTGFRAYKLADTLF- 146
Query: 308 AQGNISATVCAD 319
A+ +S+ + D
Sbjct: 147 AKWRVSSDIEPD 158
>gi|95930410|ref|ZP_01313146.1| methyltransferase small [Desulfuromonas acetoxidans DSM 684]
gi|95133450|gb|EAT15113.1| methyltransferase small [Desulfuromonas acetoxidans DSM 684]
Length = 402
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPP 48
N I + I G+ VL L A + D++ DPP
Sbjct: 272 NRINAKRHAFICGDCFDVLPDLLAQGERFDIVIMDPP 308
>gi|14521822|ref|NP_127298.1| hypothetical protein PAB1283 [Pyrococcus abyssi GE5]
gi|5459042|emb|CAB50528.1| Methylase, puative RNA modification protein [Pyrococcus abyssi GE5]
Length = 332
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 194 RLRNKDGEKL--HPTQKPEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSF 248
R + D K P +P AL RI +V+ T+ ILDPF G+G A +
Sbjct: 148 RGKEFDERKADRRPFSRPIALPPRIARAMVNLTRATREILDPFMGTGGMLIEAGLMGLKV 207
Query: 249 IGIEMKQDYIDIATKRIASV 268
GI++++D ++ A +
Sbjct: 208 YGIDIREDMVEGAKINLEYY 227
>gi|116629457|ref|YP_814629.1| O-methyltransferase [Lactobacillus gasseri ATCC 33323]
gi|311110895|ref|ZP_07712292.1| putative GIY-YIG catalytic domain protein [Lactobacillus gasseri
MV-22]
gi|116095039|gb|ABJ60191.1| Predicted O-methyltransferase [Lactobacillus gasseri ATCC 33323]
gi|311066049|gb|EFQ46389.1| putative GIY-YIG catalytic domain protein [Lactobacillus gasseri
MV-22]
Length = 338
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 15/131 (11%)
Query: 11 ENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+ + +++I N++ +KL D++ +PPY G + PD A
Sbjct: 86 SRSIKLNKLENRIEVHCLNALEAPKKLGKDKYDMVVVNPPYFKVPKGHVINPDEKKALA- 144
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ +LK G ++++ H R+G ++ L+
Sbjct: 145 ---------RHELAINLEQIIKVSSDMLKMKGKMFMV---HRPERLGEIMHYCLENHLSV 192
Query: 129 IVWRKSNPMPN 139
+ N
Sbjct: 193 KWVQPFVSKRN 203
>gi|253579247|ref|ZP_04856517.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849345|gb|EES77305.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 645
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 1 MSQKNSLAINENQNSIFEW--KDKIIKGNSISVLEKLPAKSV---DLIFADPPYNLQLNG 55
+ Q+ A+ N+IF+ ++K G+++ V + DL++ DPPY L+
Sbjct: 460 LEQQFLEAVESINNAIFDNGCENKSKHGDAMEV-------KIKHPDLVYIDPPYYSPLSD 512
Query: 56 QLYRPDHSLVDAVTDSWD 73
Y + V+ + W
Sbjct: 513 NEYVRRYHFVEGLARDWK 530
>gi|255527847|ref|ZP_05394695.1| O-methyltransferase family 3 [Clostridium carboxidivorans P7]
gi|296185448|ref|ZP_06853858.1| O-methyltransferase [Clostridium carboxidivorans P7]
gi|255508458|gb|EET84850.1| O-methyltransferase family 3 [Clostridium carboxidivorans P7]
gi|296050282|gb|EFG89706.1| O-methyltransferase [Clostridium carboxidivorans P7]
Length = 215
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFAD 46
KII+G+ + VL++L DLIF D
Sbjct: 110 KIIQGDCLEVLKQLND-KYDLIFMD 133
>gi|18310754|ref|NP_562688.1| O-methyltransferase family protein [Clostridium perfringens str.
13]
gi|18145435|dbj|BAB81478.1| probable O-methyltransferase [Clostridium perfringens str. 13]
Length = 214
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
N N + + E + I++G+ + VLE L + D+IF D
Sbjct: 94 NYAKENIKKFGLEEKIN-ILQGDCLEVLESLHDE-FDMIFMD 133
>gi|304360713|ref|YP_003856844.1| hypothetical protein phiCTP1_gp51 [Clostridium phage phiCTP1]
gi|302495572|gb|ADL40352.1| hypothetical phage protein [Clostridium phage phiCTP1]
Length = 299
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 30/169 (17%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I G+S ++ + + + D+IF PPY L D ++E +
Sbjct: 145 ICGDSNNIEDLIKDRDFDMIFTSPPY-----YDLEVYS-------KDDMSALGTYEEFMK 192
Query: 84 FTRAWLLACRRVLKPNGTLWVIGS---------YHN-IFRIGTMLQNLNFWILNDIVWRK 133
+ C +L + L + Y N I ++++++ F N+ +
Sbjct: 193 QYKNIFAHCFNMLADDRFLVIKIGEIRDKKTGIYRNFIGDNISIMKDIGFKYYNEAILIN 252
Query: 134 SNPM------PNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
S R R+ H+ ++ + N NE
Sbjct: 253 SFGTAPIRARGQMRNRKMVKVHQNILVFYKGNE--KNISNLKFWGNKNE 299
>gi|262068282|ref|ZP_06027894.1| ribosomal protein L11 methyltransferase [Fusobacterium
periodonticum ATCC 33693]
gi|291378020|gb|EFE85538.1| ribosomal protein L11 methyltransferase [Fusobacterium
periodonticum ATCC 33693]
Length = 382
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKG-NSISVLE-----KLPAK-SVDLIFADPPYNLQLN 54
S + INE + ++KI+ +I+ ++ KL DLI ++PPY +
Sbjct: 220 SSVTGVDINEEAIKLAN-ENKILNKVENINFMKSDLFEKLDEDFKYDLIVSNPPYITKEE 278
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
+ P+ + D F R LK +G L Y +
Sbjct: 279 YESLMPEVKNFEPKNALTDLGDG----LHFYREISKKAGSYLKESGYLAFEIGYKQAKDV 334
Query: 115 GTMLQNLNF 123
+L++ F
Sbjct: 335 SKILEDNGF 343
>gi|242238749|ref|YP_002986930.1| hypothetical protein Dd703_1306 [Dickeya dadantii Ech703]
gi|242130806|gb|ACS85108.1| hypothetical protein Dd703_1306 [Dickeya dadantii Ech703]
Length = 414
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
L+ +++ T+ G ILDPF G+ T+G + + + ++ I ++A+ +
Sbjct: 34 VKLVEELIL-HTEKGKKILDPFSGTATTGLCSLEQGYDALLCDINPFLIWFGNTKLATFE 92
>gi|225456147|ref|XP_002282182.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297734321|emb|CBI15568.3| unnamed protein product [Vitis vinifera]
Length = 491
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 9/226 (3%)
Query: 82 DAFTRAWLLACRRVLKPNGTLWV--IGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
D + + LK G ++ + + + K +
Sbjct: 134 DKEVEELVERMVKWLKVGGFIFFRESCFHQSGDSKRKVNPTHYREPRFYTKVFKECQTHD 193
Query: 140 FRGRRFQNA---HETLIWASPSPKAKGYTFNYDALKAANEDVQMRS--DWLIPICSGSER 194
G ++ + + + + K + ++ +D + D + C+G R
Sbjct: 194 CSGNLYELSLVGCKCIGAYVRNKKNQNQICWLWQKVSSQDDKGFQKFLDNVQYKCNGILR 253
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS-GTSGAVAKKLRRSFIGIEM 253
GE T E + KPG +LD G G +A+ +GI++
Sbjct: 254 YERVFGEGFVSTGGIETTKEFVGKLDLKPGQKVLDVGCGIGGGDFYMAENFDVEVVGIDL 313
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
+ + A +R ++ K++ P F+++ R I
Sbjct: 314 SINMVSFALERAIGLK-CSVEFEVADCTKKSYPDNTFDVIYSRDTI 358
>gi|14521186|ref|NP_126661.1| hypothetical protein PAB1719 [Pyrococcus abyssi GE5]
gi|5458404|emb|CAB49892.1| Methyltransferase, putative, DUF248 family [Pyrococcus abyssi GE5]
Length = 373
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P L ++ S +LDPF G+GT + G ++ Q+ I A + + +
Sbjct: 183 PPRLARIMVNLSEIRRGNVLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVEWL 242
Query: 269 QPLGNIE 275
+ +E
Sbjct: 243 RREFKVE 249
>gi|328708014|ref|XP_003243571.1| PREDICTED: hypothetical protein LOC100573483 isoform 1
[Acyrthosiphon pisum]
Length = 445
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PE L I +I+LDPF G+G + K + + ++ + I +A
Sbjct: 274 PEVLSYHIAKRC--KNNIVLDPFCGAGGNIIQLAKTCKRVLACDIDPNKIRLARHNAEIY 331
Query: 269 QPLGNIELTVLTGKRTEPRV 288
I+ V + P++
Sbjct: 332 GVAHKIDFVVGDIFQIYPKL 351
>gi|312377087|gb|EFR24004.1| hypothetical protein AND_11734 [Anopheles darlingi]
Length = 1490
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI--DIATKRIASVQPLGNIE 275
+ + GD++LDPF G+G+ A K IG ++ + R+ +
Sbjct: 1390 QALVRKGDLVLDPFAGTGSLLVAAAKFGAYVIGADIDYMIVHGKSKPTRVNQKVREKDES 1449
Query: 276 L 276
+
Sbjct: 1450 I 1450
>gi|282901556|ref|ZP_06309477.1| DNA-methyltransferase protein [Cylindrospermopsis raciborskii
CS-505]
gi|281193561|gb|EFA68537.1| DNA-methyltransferase protein [Cylindrospermopsis raciborskii
CS-505]
Length = 87
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTV 278
F SG+ A K R IGIE+ +Y++IA +++ +++ ++
Sbjct: 28 FFIRSGSIAEAAIKTGRKAIGIEINPNYVNIAVQKVKNIRYEEENQVKQ 76
>gi|156742688|ref|YP_001432817.1| hypothetical protein Rcas_2728 [Roseiflexus castenholzii DSM 13941]
gi|156234016|gb|ABU58799.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
Length = 157
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 21/140 (15%)
Query: 27 NSISVLEKLP--AKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKFSS----- 77
+ LP + S+D + DPPY L + + A ++
Sbjct: 10 DC----RNLPYDSGSIDCVVLDPPYMEGLFRRSERHLAGAGTYAAFRSTYSNGEPTVEGP 65
Query: 78 --FEAYDAFTRAWLLACRRVLKPNGTLWVIGSY------HNIFRIGTMLQNLNFWILNDI 129
EA RVL+P G L V ++ + ++ +
Sbjct: 66 KYHEAVLDLYCKAGNEAHRVLRPYGILIVKCQDEVSANIQHLTHVEIIINYQSLGFYTKD 125
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
++ P R + H
Sbjct: 126 LFVLVRPNKPAVSRMKKQEH 145
>gi|116330130|ref|YP_799848.1| methylase of polypeptide chain release factors [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|116123819|gb|ABJ75090.1| Methylase of polypeptide chain release factors [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 286
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 22 KII-KGNSISVLEK-----LPAKS-VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+II +GN+I LE +P +S DLI +PPY + D V
Sbjct: 163 QIIGEGNNIQFLESNLFLSIPKESEFDLIVTNPPYIPISDKTAMMKD-----VVDYEPHL 217
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
E F + R LK G ++
Sbjct: 218 ALFLEDPKEFLSKLIEDARIHLKEGGKFYM 247
>gi|308809742|ref|XP_003082180.1| unnamed protein product [Ostreococcus tauri]
gi|116060648|emb|CAL57126.1| unnamed protein product [Ostreococcus tauri]
Length = 486
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 215 RILVSSTKPGDI-ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI-ASVQPLG 272
+++ G +LDPF G GT+ A L +G ++ ++ R +
Sbjct: 118 DLILRDVLSGSTSVLDPFAGGGTTLVCAATLGMRAVGTDVSPLACFVSAHRCWRPDETTI 177
Query: 273 NIELTVLTGKRTEPRVAFNLLVERGLIQPGQ 303
+ + + R + A VE + G
Sbjct: 178 DEMVHRASAARDLAKSAEEQSVESDAEEAGD 208
>gi|70729260|ref|YP_258997.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas fluorescens Pf-5]
gi|123656894|sp|Q4KFI6|RLML_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|68343559|gb|AAY91165.1| methylase, putative [Pseudomonas fluorescens Pf-5]
Length = 754
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 20/93 (21%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+++ +G+ ++ L+ + DLIF DPP + ++ V D
Sbjct: 644 KNRLEQGDVMAWLDSCRDE-FDLIFIDPP---------TFSNSKRMEGVFD--------- 684
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
L L P G L+ ++
Sbjct: 685 -VQRDQVQLLDLAMARLAPGGVLYFSNNFRKFQ 716
>gi|224283860|ref|ZP_03647182.1| Cyclopropane-fatty-acyl-phospholipid synthase [Bifidobacterium
bifidum NCIMB 41171]
Length = 423
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
KPGD +LD G G A K +G+ + + I+ + I EL V+
Sbjct: 188 KPGDRMLDIGCGWGALVIAAAKRGIKALGVSLSHEQIEYGQEWIRREGLENLAELRVMD- 246
Query: 282 KRTEPRVAFNLLVERGLIQ-PGQILT 306
R P F+ + G+++ G
Sbjct: 247 YREVPERDFDGITSVGMMEHVGAKNY 272
>gi|163813860|ref|ZP_02205254.1| hypothetical protein COPEUT_00013 [Coprococcus eutactus ATCC 27759]
gi|158450730|gb|EDP27725.1| hypothetical protein COPEUT_00013 [Coprococcus eutactus ATCC 27759]
Length = 639
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 1 MSQKNSLAINENQNSIFEW--KDKIIKGNSISVLEKLPAKSV---DLIFADPPYNLQLNG 55
+ Q+ A+ N+IF+ ++K G+++ V + DL++ DPPY L+
Sbjct: 460 LEQQFLEAVESINNAIFDNGCENKSKHGDAMEV-------KIKHPDLVYIDPPYYSPLSD 512
Query: 56 QLYRPDHSLVDAVTDSWD 73
Y + V+ + W
Sbjct: 513 NEYVRRYHFVEGLARDWK 530
>gi|77164866|ref|YP_343391.1| hypothetical protein Noc_1367 [Nitrosococcus oceani ATCC 19707]
gi|254433780|ref|ZP_05047288.1| hypothetical protein NOC27_711 [Nitrosococcus oceani AFC27]
gi|76883180|gb|ABA57861.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
gi|207090113|gb|EDZ67384.1| hypothetical protein NOC27_711 [Nitrosococcus oceani AFC27]
Length = 746
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 24/161 (14%)
Query: 35 LPAKSVDLIFADPPYN-----LQLNGQLYRPDHSLV--DAVTDSWD-------KFSSFEA 80
LP SVD + DPP+ QL + ++ + + + + A
Sbjct: 512 LPEHSVDAVLTDPPFFDNVHYSQLADFFHVWQRHILGSNGYRQDYTTRSRNEVQSAEVNA 571
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT-------MLQNLNFWILNDIVWRK 133
+ A + R+LK +G + +YH+ G M + +
Sbjct: 572 FTDRLTAVWIEVHRILKDDG--ILAFTYHHSRPEGWRSVLHALMAAGFGITAAHPMKAEM 629
Query: 134 SNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAA 174
S MP + + N + +I + + + +N D + A
Sbjct: 630 SVAMPKHQAKEPINL-DIIIVCRKRSQLQRHCWNGDLWETA 669
Score = 36.9 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
I+ DPF GSGT+ A KL IG ++ + ++
Sbjct: 108 KDAIVFDPFMGSGTTIGEALKLGARGIGRDINPVAYFLVKNALSIH 153
>gi|187734834|ref|YP_001876946.1| hypothetical protein Amuc_0325 [Akkermansia muciniphila ATCC
BAA-835]
gi|187424886|gb|ACD04165.1| conserved hypothetical protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 431
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
G+ ++++P + VDLI PPY +
Sbjct: 243 YLGDVRKNIQQVPDREVDLIITSPPYLNSRDYTDIY 278
>gi|297242726|ref|ZP_06926664.1| hypothetical protein GVAMD_0738 [Gardnerella vaginalis AMD]
gi|296888937|gb|EFH27671.1| hypothetical protein GVAMD_0738 [Gardnerella vaginalis AMD]
Length = 406
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+N+ Q + L I+LDPF GSGT+ + + GIE+
Sbjct: 33 KNRSNLFTWNGQFSPQFVEAELTKYADKNYIVLDPFAGSGTTLYESARKNLLAYGIELNP 92
Query: 256 DYIDIA 261
+A
Sbjct: 93 SAYYMA 98
Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 40/173 (23%)
Query: 4 KNSLAINENQNSIFEWKDKII------------KGNSISVLEKLPAKSVDLIFADPPYNL 51
KN + N E K+ I+ G++ L VDL+ PPY
Sbjct: 162 KNEVTFELVVNKWGELKNTILELPFSNRPICVSNGDARKT--SLKTDLVDLVLTSPPYIN 219
Query: 52 QLNGQLYRPDHSLVDAVT--------------DSWDKFSSFEAYDAFTRAWLLACRRVLK 97
N ++F + Y L R+ K
Sbjct: 220 VFNYHQNYRKSVEALGYNVLEIAKSEFGANRKHRGNRFLTVIQYCIDIALSLKEASRICK 279
Query: 98 PNGTL------------WVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138
+ + + I+RIGT + F I + V++
Sbjct: 280 DKARMIYVVGRESTVLGYSFCNSELIYRIGTEILGFEFDIRQERVFKNRYGHM 332
>gi|170754291|ref|YP_001782171.1| O-methyltransferase family protein [Clostridium botulinum B1 str.
Okra]
gi|169119503|gb|ACA43339.1| O-methyltransferase family protein [Clostridium botulinum B1 str.
Okra]
Length = 218
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFAD 46
KII+G+ + +L+ L D+IF D
Sbjct: 110 KIIQGDCLEILKNLED-KYDMIFMD 133
>gi|15669845|ref|NP_248659.1| hypothetical protein MJ_1649 [Methanocaldococcus jannaschii DSM
2661]
gi|3334438|sp|Q59043|Y1649_METJA RecName: Full=Putative ribosomal RNA large subunit
methyltransferase MJ1649
gi|1592232|gb|AAB99670.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 387
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 3 QKNSLAINENQ---NSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQL 57
K +L + E N+I + + + I+GN+ V++++ + D++ DPP Q +
Sbjct: 244 SKKALKLAEENIELNNIPKDRYEFIEGNAFEVMKEMIEDKEKFDVVILDPPAFTQTEDDI 303
Query: 58 Y 58
Sbjct: 304 K 304
>gi|330834308|ref|YP_004409036.1| putative RNA methylase [Metallosphaera cuprina Ar-4]
gi|329566447|gb|AEB94552.1| putative RNA methylase [Metallosphaera cuprina Ar-4]
Length = 305
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 20/132 (15%)
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNI 274
R++V+ ++P +LDPF G G+ A+ L +G++ I+ A + + +
Sbjct: 152 RLMVNLSRPKGKVLDPFLGLGSILIEARWLGNQCVGLDADVKMINKAKINLDYFNYVCEV 211
Query: 275 E------LTVLTGKRTEPRVAFNL----------LVERGLIQPGQILTNAQGNISATVCA 318
L + + + +G + + + + +A
Sbjct: 212 AQGSATSLPIEGKFTIVTDPPYGRSSNAKGVKLLDLYQGFLSEVAEILDGRLVFAA---- 267
Query: 319 DGTLISGTELGS 330
D ++ + S
Sbjct: 268 DSSVDWRDTIRS 279
>gi|218709415|ref|YP_002417036.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio splendidus LGP32]
gi|218322434|emb|CAV18587.1| predicted N6-adenine-specific DNA methylase [Vibrio splendidus
LGP32]
Length = 706
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++ + + L K S DLIF DPP R D S F
Sbjct: 595 HQFVQADCLQWLVK-EQGSYDLIFIDPP----TFSNSKRMDQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + + L+ L + + K+ P+
Sbjct: 639 HIQLM----ENLKRLLREEGTIVFSNNKRHFKMDVEGLEELG--LKAQNISAKTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|254173067|ref|ZP_04879741.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
gi|214033223|gb|EEB74051.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
Length = 418
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 74/236 (31%), Gaps = 36/236 (15%)
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
T +L R LK G L+ + V F G
Sbjct: 149 TPEYLRVLRNFLKETG-----------------LRPWSLTRKTGDVHYLQVREGKFTGEV 191
Query: 145 FQN--AHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK 202
N AH + ++F + D + G+ +R + G+
Sbjct: 192 MANLIAHRRPSEETAEAFRDYFSFADSLYWSLKADEGDDPRGEPELVDGNPFIRERIGDV 251
Query: 203 ---LHPTQK------PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+HP LL R + + T G+ +LD + G GT G K GIE+
Sbjct: 252 TYLIHPNSFFQTNSYALELLLRAVENFTD-GERVLDLYSGVGTFGVYLAKRGFRVEGIEI 310
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV----ERGLIQPGQIL 305
+++A + G + P ++ ++ +GL + G++L
Sbjct: 311 NPFAVEMANRNAKL---NGVNAQFRVGRAEETPIGDYDTVIVDPPRKGLKEAGELL 363
>gi|322369667|ref|ZP_08044231.1| hypothetical protein ZOD2009_09268 [Haladaptatus paucihalophilus
DX253]
gi|320550837|gb|EFW92487.1| hypothetical protein ZOD2009_09268 [Haladaptatus paucihalophilus
DX253]
Length = 91
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTS 237
E+ E H + PE+ + + +K GD +LDPF G GT+
Sbjct: 10 EKPDELPSEFGHDIRTPESFVEEFVTEFSKDGDTVLDPFAGFGTT 54
>gi|304311577|ref|YP_003811175.1| hypothetical protein HDN1F_19470 [gamma proteobacterium HdN1]
gi|301797310|emb|CBL45530.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 230
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 3 QKNSLAINENQNSIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+KN AI + + E +D KI++G+++ +L + P++ D++F DPP+
Sbjct: 106 EKNPRAITTIKAFLHEVEDTHAKILEGDALRILARPPSEPFDVVFLDPPF 155
>gi|254387522|ref|ZP_05002761.1| methylase [Streptomyces clavuligerus ATCC 27064]
gi|294815091|ref|ZP_06773734.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|326443453|ref|ZP_08218187.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
[Streptomyces clavuligerus ATCC 27064]
gi|197701248|gb|EDY47060.1| methylase [Streptomyces clavuligerus ATCC 27064]
gi|294327690|gb|EFG09333.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 281
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 11 ENQNSIFEW--KD------KIIKGNSISVLEKLPAKSVDLIFADPPY 49
E + +W K+ + GN+++ L +L VDL+ ++PPY
Sbjct: 142 ELSENALDWARKNAEGSRVTVHHGNALTALPEL-DGQVDLVISNPPY 187
>gi|167582761|ref|ZP_02375635.1| site-specific DNA methyltransferase [Burkholderia thailandensis
TXDOH]
Length = 70
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQ 52
+ +++ LP S+D++F D PY+
Sbjct: 2 DVLTLARMLPDASIDMVFTDLPYSSG 27
>gi|311693164|gb|ADP96037.1| spermidine synthase [marine bacterium HP15]
Length = 293
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFAD 46
G+ I + + SVDLI D
Sbjct: 138 FFFGDGIQWMRDIEPNSVDLIIID 161
>gi|145530654|ref|XP_001451099.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418743|emb|CAK83702.1| unnamed protein product [Paramecium tetraurelia]
Length = 414
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 209 PEALLSRI-----LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
P +L + + K D + DPF G+G+S G E+ Y+
Sbjct: 208 PVSLAHDLAFLMANQAQVKENDFVFDPFAGTGSSLVACSHFGAICFGSEIDG-YLMKGHC 266
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
+ L K+ +P + + L P I T+
Sbjct: 267 I--GYINSKSTYLKDPNYKQVKPYINL-NFQQYNLPPPNLIQTD 307
>gi|17231124|ref|NP_487672.1| site-specific DNA-methyltransferase (cytosine-specific) [Nostoc sp.
PCC 7120]
gi|61228218|sp|P0A461|MTA1_ANASP RecName: Full=Modification methylase AvaI; Short=M.AvaI; AltName:
Full=N(4) cytosine-specific methyltransferase AvaI
gi|61228220|sp|P0A462|MTA1_ANAVA RecName: Full=Modification methylase AvaI; Short=M.AvaI; AltName:
Full=N(4)- cytosine-specific methyltransferase AvaI
gi|1523803|emb|CAA66984.1| methylase [Anabaena variabilis]
gi|17132765|dbj|BAB75331.1| site-specific DNA-methyltransferase (cytosine-specific) [Nostoc sp.
PCC 7120]
Length = 482
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
+ + + +L + D I PPY + +
Sbjct: 281 LFNASCLKILPEFEQDFYDCIITSPPYCNRYDYTRTY 317
>gi|226942497|ref|YP_002797570.1| SAM-dependent methyltransferase [Azotobacter vinelandii DJ]
gi|226717424|gb|ACO76595.1| SAM-dependent methyltransferase [Azotobacter vinelandii DJ]
Length = 397
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 24 IKGNSISVLEKLP--AKSVDLIFADPPYNLQLNGQLYRPD 61
++G+ +++L + D++ ADPP ++ L +
Sbjct: 275 VEGDVFEAMKELKAAEERFDVVIADPPAFIKRKKDLKNGE 314
>gi|332159191|ref|YP_004424470.1| hypothetical protein PNA2_1552 [Pyrococcus sp. NA2]
gi|331034654|gb|AEC52466.1| hypothetical protein PNA2_1552 [Pyrococcus sp. NA2]
Length = 279
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
KII G+S ++ K + D I DPP
Sbjct: 178 KIIHGDSYELVRKFEDEIFDAIIHDPP 204
>gi|300361913|ref|ZP_07058090.1| O-methyltransferase [Lactobacillus gasseri JV-V03]
gi|300354532|gb|EFJ70403.1| O-methyltransferase [Lactobacillus gasseri JV-V03]
Length = 342
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 15/127 (11%)
Query: 15 SIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
+ + +++I N++ +KL D++ +PPY G + PD A
Sbjct: 90 ELNKLENRIEVHCLNALEAPKKLGKDKYDMVVVNPPYFKVPKGHVINPDEKKALA----- 144
Query: 73 DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWR 132
+ +LK G ++++ H R+G ++ L+ +
Sbjct: 145 -----RHELAINLEQIIKVSSDMLKMKGKMFMV---HRPERLGEIMHYCLENHLSVKWVQ 196
Query: 133 KSNPMPN 139
N
Sbjct: 197 PFVSKRN 203
>gi|315230569|ref|YP_004071005.1| hypothetical protein TERMP_00805 [Thermococcus barophilus MP]
gi|315183597|gb|ADT83782.1| hypothetical protein TERMP_00805 [Thermococcus barophilus MP]
Length = 364
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P L ++ + LDPF G GT + G + I A + + +
Sbjct: 174 PPRLARIMVNLTEIRQGNFLDPFCGIGTIVQEFLLQGLNAYGSDSDPKAIKGAKENLKWL 233
Query: 269 QP 270
+
Sbjct: 234 KK 235
>gi|320101476|ref|YP_004177068.1| hypothetical protein Desmu_1291 [Desulfurococcus mucosus DSM 2162]
gi|319753828|gb|ADV65586.1| hypothetical protein Desmu_1291 [Desulfurococcus mucosus DSM 2162]
Length = 937
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
L N + + D + ++ + + LP KSVD++ DPPY Q +
Sbjct: 505 RLLCNRLEGLWKDGLDAVYLWDAREIDKHLPEKSVDVVDVDPPYYDQHDY 554
>gi|207109928|ref|ZP_03244090.1| putative RNA methylase [Helicobacter pylori HPKX_438_CA4C1]
Length = 143
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLE--KLPAKSVD-----LIFADPPYN 50
+S + + S+ + K I G+S+ +L+ L LI DPPY
Sbjct: 35 LSDRYKNIYMKANKSLDLKEQKFICGDSLELLKNNSLMQNLFKNELASLILIDPPYG 91
Score = 36.2 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI---ATKR--IASVQPLGNI 274
TK +++ D F G G + + R IG ++ Y +I A K + + +
Sbjct: 2 FTKENELVFDYFAGVGGTLLGSSLCNRKAIGFDLSDRYKNIYMKANKSLDLKEQKFICGD 61
Query: 275 ELTVLTGKRTEPRVAFNLLVERGLIQP--GQILTNAQGNISATVCAD 319
L +L + N L LI P G +L+ + + D
Sbjct: 62 SLELLKNNSLMQNLFKNELASLILIDPPYGDMLSRPKTGETLKQKKD 108
>gi|145355280|ref|XP_001421892.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582131|gb|ABP00186.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 469
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 21/207 (10%)
Query: 23 IIKGNSISVLEKLPAKSVDL------IFADPPYNLQLNGQLYRP------DHSLVDAVTD 70
+ G+ L LP + L I ADPPY ++ G+ D+++ + + +
Sbjct: 265 LFVGD----LHALPTRRFGLEGTLQGIVADPPYGVRAGGRKSGGRKPLPEDYAIPEEMRE 320
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNG--TLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ ++ + + R L G T ++ GS + R L L
Sbjct: 321 THIPSTAPYPFAEMNDDLMELAARFLSIGGRLTFFLPGSTEDAEREIRDLPAHPALRLRW 380
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
N + R ++ H + + + + + D+ R L+
Sbjct: 381 HSLETFNQIWGRRLVTYEKIHPYDVEVARKAREDAVAARAASDEP---DLIERMRALVYD 437
Query: 189 CSGSERLRNKDGEKLHPTQKPEALLSR 215
+E R K EK H P+AL R
Sbjct: 438 QVPAEAKRRKRYEKFHGVPPPDALTER 464
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
+PG +ILDPF G+G+ A +GI++ I
Sbjct: 189 RPGGVILDPFCGTGSMLVAAAHYGAMTMGIDIDIRVIKH 227
>gi|86148557|ref|ZP_01066843.1| putative N6-adenine-specific DNA methylase [Vibrio sp. MED222]
gi|85833660|gb|EAQ51832.1| putative N6-adenine-specific DNA methylase [Vibrio sp. MED222]
Length = 706
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++ + + L K S DLIF DPP R D S F
Sbjct: 595 HQFVQADCLQWLVK-EQGSYDLIFIDPP----TFSNSKRMDQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + + L+ L + + K+ P+
Sbjct: 639 HIQLM----ENLKRLLREEGTIVFSNNKRHFKMDVEGLEELG--LKAQNISAKTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|187477073|ref|YP_785097.1| hypothetical protein BAV0564 [Bordetella avium 197N]
gi|115421659|emb|CAJ48169.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 206
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
+I G++++ LE++ A DL+ DPP+
Sbjct: 107 RIHAGDALAALERMDASRFDLVLLDPPFGQG 137
>gi|195450985|ref|XP_002072718.1| GK13537 [Drosophila willistoni]
gi|194168803|gb|EDW83704.1| GK13537 [Drosophila willistoni]
Length = 488
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK---RIASVQPLGNI 274
+ PGD++ DPF G+G+ A K +G ++ + A RI +
Sbjct: 210 QALVAPGDLVFDPFVGTGSLLVSAAKFGGYVMGADIDYMMLH-ARCRPSRITQKVREKDE 268
Query: 275 ELTVL 279
+
Sbjct: 269 SIRSN 273
>gi|15616566|ref|NP_244872.1| modification methylase [Bacillus halodurans C-125]
gi|10176629|dbj|BAB07723.1| modification methylase [Bacillus halodurans C-125]
Length = 365
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
S K + N +KI K ++ ++ K+ S DLI+ D PYN + G Y
Sbjct: 195 SIKEIKLLMPEFNDGLNNGNKIFKEDANELVRKI---SADLIYIDTPYNSRQYGDAY 248
>gi|222834217|gb|EEE72694.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L + L ++ + G+ +LD GSG VAKKL +GI++ + +
Sbjct: 141 GTGSHPT---TRLCMQWLEANVRAGETVLDYGCGSGILAIVAKKLGAGDTVGIDIDPNAV 197
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D + R + + + + ++ + +SA V
Sbjct: 198 DAS--RYNAERNRVEASFALPESVSEATYDLVVANILSNPLKLMAAM------LSARVRP 249
Query: 319 DGTLI 323
G LI
Sbjct: 250 GGRLI 254
>gi|167760090|ref|ZP_02432217.1| hypothetical protein CLOSCI_02462 [Clostridium scindens ATCC 35704]
gi|167662215|gb|EDS06345.1| hypothetical protein CLOSCI_02462 [Clostridium scindens ATCC 35704]
Length = 639
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 1 MSQKNSLAINENQNSIFEW--KDKIIKGNSISVLEKLPAKSV---DLIFADPPYNLQLNG 55
+ Q+ A+ N+IF+ ++K G+++ V + DL++ DPPY L+
Sbjct: 460 LEQQFLEAVESINNAIFDNGCENKSKHGDAMEV-------KIKHPDLVYIDPPYYSPLSD 512
Query: 56 QLYRPDHSLVDAVTDSWD 73
Y + V+ + W
Sbjct: 513 NEYVRRYHFVEGLARDWK 530
>gi|94311997|ref|YP_585207.1| ribosomal protein L11 methyltransferase [Cupriavidus metallidurans
CH34]
gi|166223434|sp|Q1LIT8|PRMA_RALME RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|93355849|gb|ABF09938.1| methylase for 50S ribosomal subunit protein L11 [Cupriavidus
metallidurans CH34]
Length = 304
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L + L ++ + G+ +LD GSG VAKKL +GI++ + +
Sbjct: 145 GTGSHPT---TRLCMQWLEANVRAGETVLDYGCGSGILAIVAKKLGAGDTVGIDIDPNAV 201
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
D + R + + + + ++ + +SA V
Sbjct: 202 DAS--RYNAERNRVEASFALPESVSEATYDLVVANILSNPLKLMAAM------LSARVRP 253
Query: 319 DGTLI 323
G LI
Sbjct: 254 GGRLI 258
>gi|282850827|ref|ZP_06260201.1| GIY-YIG catalytic domain protein [Lactobacillus gasseri 224-1]
gi|282557779|gb|EFB63367.1| GIY-YIG catalytic domain protein [Lactobacillus gasseri 224-1]
Length = 338
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 15/131 (11%)
Query: 11 ENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAV 68
+ + +++I N++ +KL D++ +PPY G + PD A
Sbjct: 86 SRSIKLNKLENRIEVHCLNALEAPKKLGKDKYDMVVVNPPYFRVPKGHVINPDEKKALA- 144
Query: 69 TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
+ +LK G ++++ H R+G ++ L+
Sbjct: 145 ---------RHELAINLEQIIKVSSDMLKMKGKMFMV---HRPERLGEIMHYCLENHLSV 192
Query: 129 IVWRKSNPMPN 139
+ N
Sbjct: 193 KWVQPFVSKRN 203
>gi|238917691|ref|YP_002931208.1| hypothetical protein EUBELI_01771 [Eubacterium eligens ATCC 27750]
gi|238873051|gb|ACR72761.1| Hypothetical protein EUBELI_01771 [Eubacterium eligens ATCC 27750]
Length = 182
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 43/152 (28%), Gaps = 28/152 (18%)
Query: 22 KII--KGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
KI GN+ L + +D I PPY N+ + D SL++
Sbjct: 43 KIFTRNGNATD-LHFIKDSRIDFICTHPPYANIIKYSKGIEGDISLLNV----------- 90
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWV-IGSYHNIFRIGTMLQNLNFWILN---------- 127
E + + RVLK V IG ++ + + L
Sbjct: 91 EKFLTEMQKVAEESYRVLKKGKMCAVMIGDLRKYGKVIPLGFRMMECFLQAGFANKEIII 150
Query: 128 --DIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
R ++ AHE +
Sbjct: 151 KEQHNCRSTDFWEKRNNNFLLLAHEYIFVFQK 182
>gi|224371956|ref|YP_002606122.1| HsdM3 [Desulfobacterium autotrophicum HRM2]
gi|223694675|gb|ACN17958.1| HsdM3 [Desulfobacterium autotrophicum HRM2]
Length = 672
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL-QLNGQLYRPDHSLVDAVTDSWDKFSS 77
KI ++ L SVDLI +PP+ + + D F S
Sbjct: 432 KIFYTDNSLTTPSLQPNSVDLICTNPPFGTPKFGKGKATQKQHYQKDMDLILDNFRS 488
>gi|68076773|ref|XP_680306.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501220|emb|CAH93995.1| conserved hypothetical protein [Plasmodium berghei]
Length = 480
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 34/260 (13%), Positives = 71/260 (27%), Gaps = 36/260 (13%)
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+ V + W + ++ A +A L + +Y G ++
Sbjct: 79 IKGVIEIWGEGYTYNELLANLKAKNDLFESTLNNKKWCFHFHAY------GKIINQEEKV 132
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDW 184
D+ N K + A + + +
Sbjct: 133 KKMDMFNIYVEKYKNIDILNPHVQLAIFEEYDKESKGILNKIYFGKCIALRNNKKECDNC 192
Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST----------------KPGDIIL 228
+ +++ N + + AL R ++ T K GDI+L
Sbjct: 193 NND-VNEKKKVENNNRKTWWAH---YALNKRRILGPTTTDNELAFIMCNIAKIKKGDIVL 248
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRV 288
DPF GSG + IG ++ I ++ L ++ +
Sbjct: 249 DPFVGSGGLLIASSVFNAICIGNDID----------IRLLKGYKLSYLNPRMKHKSNKKT 298
Query: 289 AFNLLVERGLIQPGQILTNA 308
F + L P ++++
Sbjct: 299 IFENFKQYNLNSPEILVSDN 318
>gi|238754334|ref|ZP_04615690.1| hypothetical protein yruck0001_17360 [Yersinia ruckeri ATCC 29473]
gi|238707367|gb|EEP99728.1| hypothetical protein yruck0001_17360 [Yersinia ruckeri ATCC 29473]
Length = 706
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 580 NLRVNGLTGQQHRLIQADCLSWLSN-TEEQFDVIFIDPP 617
>gi|20095011|ref|NP_614858.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888274|gb|AAM02788.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 431
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 17/140 (12%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE--AY 81
+ ++ ++L DL+ DPP S+ WD+ ++ E +
Sbjct: 295 LCMDARDAPDQLGEGIADLVLVDPP---------CTGTGSVYSKPEKRWDRETTGEPTKW 345
Query: 82 DAFTRAWLLACRRVLKPNG----TLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
L R+LKP G + I N I +++ L D+ ++P
Sbjct: 346 AQLQWELLKVAVRLLKPGGRIVYSTCSITLTENERLIERLVRRYRGLELVDVPLEWASPG 405
Query: 138 PNF--RGRRFQNAHETLIWA 155
R + + H+T +
Sbjct: 406 VRMPEARRIWPHRHDTDGFF 425
>gi|57506161|ref|ZP_00372082.1| ulcer associated adenine specific DNA methyltransferase
[Campylobacter upsaliensis RM3195]
gi|57015556|gb|EAL52349.1| ulcer associated adenine specific DNA methyltransferase
[Campylobacter upsaliensis RM3195]
Length = 351
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNG--------QLYRPDHSLVDAVTD--SWD 73
G+S+ +L+ +S+D+++ DPPYN Q L R D+ + V W
Sbjct: 209 FCGDSVKLLQGF-KESIDILYLDPPYN-QRQYAPNYHLLETLARYDNPNIKGVAGVREWG 266
Query: 74 KFSSF 78
+ S
Sbjct: 267 EQKSL 271
>gi|253990230|ref|YP_003041586.1| 23S rRNA m(2)G2445 methyltransferase [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781680|emb|CAQ84843.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 710
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+ + +S L + + DLIF DPP
Sbjct: 595 HRLIQADCLSWLAQ-THEQFDLIFIDPP 621
>gi|332288168|ref|YP_004419020.1| 23S rRNA methylteansferase [Gallibacterium anatis UMN179]
gi|330431064|gb|AEC16123.1| 23S rRNA methylteansferase [Gallibacterium anatis UMN179]
Length = 711
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
N I + K+I+ + + LEK DLIF DPP
Sbjct: 591 NEIKGRQHKLIQADCLQWLEK-ATGQYDLIFVDPP 624
>gi|255319444|ref|ZP_05360658.1| methylase [Acinetobacter radioresistens SK82]
gi|262378532|ref|ZP_06071689.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255303384|gb|EET82587.1| methylase [Acinetobacter radioresistens SK82]
gi|262299817|gb|EEY87729.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 734
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 37/148 (25%), Gaps = 20/148 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + + L++ + D+IF DPP +
Sbjct: 604 SKENFVLNGLTVDHPDQQHQFFASDCFEWLKE-GHEQYDMIFIDPP---------TFSNS 653
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S L L GTL+ +Y + +
Sbjct: 654 KKFYGTFDVQRDHVSL----------LKRAMNRLTTEGTLYFSNNYRGFEMDEEIEAMFD 703
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+ R ++ H
Sbjct: 704 IEEITQETIGPDFKRNQKIHRAWKIQHY 731
>gi|104780909|ref|YP_607407.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas entomophila L48]
gi|122403957|sp|Q1ICL2|RLML_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|95109896|emb|CAK14601.1| putative methylase [Pseudomonas entomophila L48]
Length = 730
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 24/95 (25%)
Query: 20 KDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
++++ + + V+ L S DLIF DPP + ++ V D
Sbjct: 620 RNRLEQSD---VMAWLQNNQESFDLIFIDPP---------TFSNSKRMEGVFD------- 660
Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIF 112
L L P G L+ ++
Sbjct: 661 ---VQRDHVELLDLAMARLAPGGVLYFSNNFRKFQ 692
>gi|229492094|ref|ZP_04385904.1| putative modification methylase [Rhodococcus erythropolis SK121]
gi|229320991|gb|EEN86802.1| putative modification methylase [Rhodococcus erythropolis SK121]
Length = 454
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 157 PSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
S + + + + A + + G++ L LH K S
Sbjct: 12 KSQPSLAHRHLLERIDQAEDVTYWPELSSLVHWRGNQDLP------LHRWYKYREGYSPA 65
Query: 217 LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
L+ + + G+ ILDPF GSG+ A +L GI++ + + ++
Sbjct: 66 LIDAFQLGENILDPFSGSGSIMVGAAELGLRSTGIDVNPLATFVTSVKL 114
Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
KI G++ ++ KL + S D + PPY + +
Sbjct: 264 KIFTGSANRIMPKLDSGSFDSVVFSPPYANRFDY 297
>gi|325960084|ref|YP_004291550.1| hypothetical protein Metbo_2365 [Methanobacterium sp. AL-21]
gi|325331516|gb|ADZ10578.1| Conserved hypothetical protein CHP01177 [Methanobacterium sp.
AL-21]
Length = 351
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 196 RNKDGEKLHPTQK--PEALL---SRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSF 248
++ + K H P ++ +R +V+ T K D +LDPF G+G A L
Sbjct: 159 KHFNNFKPHKRPFFYPGSMSPKLARCMVNLTEIKEDDTVLDPFCGTGGILIEAGILGAKL 218
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
IG ++ + + N ++ K+ N +V
Sbjct: 219 IGSDLDYKMVQGTKSNLE-YCGFKNYKIFREDAKKIHLETRVNAIV 263
>gi|167585786|ref|ZP_02378174.1| hypothetical protein BuboB_10648 [Burkholderia ubonensis Bu]
Length = 77
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
++ + S PG I+DPF G GT+ A +
Sbjct: 37 VEQMAPFIGSHATPGGWIVDPFCGFGTTLVAAAQCG 72
>gi|150401097|ref|YP_001324863.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
gi|150013800|gb|ABR56251.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
Length = 367
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISV---LEKLPAKSVDLIFADPPYNLQLNGQ 56
+ ++ N SI +W +++ L+ L + VD I DPPY + +
Sbjct: 264 KTYELDNNVISIKQW-------DALDAKNYLKSLNIEKVDTIITDPPYGMSTAKK 311
>gi|75909388|ref|YP_323684.1| cytosine-specific DNA-methyltransferase [Anabaena variabilis ATCC
29413]
gi|75703113|gb|ABA22789.1| site-specific DNA-methyltransferase (cytosine-specific) [Anabaena
variabilis ATCC 29413]
Length = 482
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYR 59
+ + + +L + D I PPY + +
Sbjct: 281 LFNASCLKILPEFEQDFYDCIITSPPYCNRYDYTRTY 317
Score = 36.6 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
+L+ + + L+++++ KP + ILDPF G+GT GI
Sbjct: 61 NKLKPQYRWFKYKEAFSVDLVNQLIFEYEKKPFERILDPFAGAGTMLFACSDAGIQADGI 120
Query: 252 EMKQDYIDIATKR-IASVQPLGNIELTVLTGKRTEPRVAFNL 292
E+ +I R I Q L ++ + +P N
Sbjct: 121 ELLPIGQEIIKVRKIIQRQFRREDFLRLIEWYKQKPWNQHNS 162
>gi|300703018|ref|YP_003744620.1| ribosomal protein l11 methyltransferase [Ralstonia solanacearum
CFBP2957]
gi|299070681|emb|CBJ41976.1| Ribosomal protein L11 methyltransferase [Ralstonia solanacearum
CFBP2957]
Length = 298
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L +PG+ LD GSG VAKKL +GI++ + +
Sbjct: 145 GTGSHPT---TRLCMEWLEQHVQPGERALDYGCGSGILAIVAKKLGAGETVGIDIDPNAV 201
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ + + L P F+L+V L P L + A V
Sbjct: 202 EASRYNAERNRVEAGFSLPD-----DAPEGTFDLVVANILSNP---LKLMAAMLCARVRP 253
Query: 319 DGTLI-SGTELGSIHRVGAKVSGS 341
G L+ SG V A +G+
Sbjct: 254 GGRLVLSGVLERQAEEVAAAYAGA 277
>gi|300716112|ref|YP_003740915.1| conserved uncharacterized protein YcbY [Erwinia billingiae Eb661]
gi|299061948|emb|CAX59064.1| conserved uncharacterized protein YcbY [Erwinia billingiae Eb661]
Length = 705
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + + L + ++ DLIF DPP + F
Sbjct: 591 HRLMQADCLGWLSE-SSEQFDLIFIDPP---------------TFSNSKRMEESFEIQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+ GT+ +
Sbjct: 635 HLTLM----KDLKRLLRKGGTIMFSNNKR 659
>gi|269120866|ref|YP_003309043.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
33386]
gi|268614744|gb|ACZ09112.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
33386]
Length = 456
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 210 EALLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
E L S++L D II D F G+GT G + K R GIE+ ++ ++ A +
Sbjct: 294 ELLYSKVLEFLPDTEDKIIFDLFSGTGTIGQIVSKNARYVYGIELVEEAVEKANENAELN 353
Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQG 310
+ K+ E + I+P ++ +
Sbjct: 354 NIKNCKFIAGDVFKKAEE-------LREADIRPDIVIFDPPR 388
>gi|75910222|ref|YP_324518.1| hypothetical protein Ava_4018 [Anabaena variabilis ATCC 29413]
gi|75703947|gb|ABA23623.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length = 184
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
N+ +W ++++G+ + L+ L + D I+ DPPY L
Sbjct: 87 NNEQKW--RVLRGDVLQQLKNLSGQQFDRIYFDPPYASGL 124
>gi|88807519|ref|ZP_01123031.1| hypothetical protein WH7805_13248 [Synechococcus sp. WH 7805]
gi|88788733|gb|EAR19888.1| hypothetical protein WH7805_13248 [Synechococcus sp. WH 7805]
Length = 206
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 13/123 (10%)
Query: 246 RSFIGIE-------MKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
R F IE ++ ++ T + ++E K R +E G+
Sbjct: 74 REFFDIEPEQAIALLELMALEDMTPALQEEANQVDVEAKAGAEKLKRSRRPPINYLELGI 133
Query: 299 IQPGQILTNAQGNISATVCADGT-LISGTELGSIHRVGAKVSGSET--CNGWNFWYFEKL 355
+L G + TV ADG + E+ SI ++ A + NG +W F
Sbjct: 134 PVGSTLLYIGDGQTTCTV-ADGRKVEFQGEVMSISKLTADLRNIPGRPINGPAYWSF--N 190
Query: 356 GEL 358
G L
Sbjct: 191 GRL 193
>gi|189501455|ref|YP_001960925.1| type I restriction-modification system, M subunit [Chlorobium
phaeobacteroides BS1]
gi|189496896|gb|ACE05444.1| type I restriction-modification system, M subunit [Chlorobium
phaeobacteroides BS1]
Length = 527
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGA-VAKKLR-RSFI 249
ER + G+K P + + ++ +PGD I DP GSG AK++ R+F
Sbjct: 190 ERFASDSGKKAGEFFTPFKVSELVAKLADPRPGDRICDPACGSGGLLIKAAKEVGDRNFA 249
Query: 250 GIEMKQDYIDIATKRIASVQPLGNIE 275
+ + A R+ +
Sbjct: 250 LFGQESNGSTWALCRMNMFLHSFDSA 275
>gi|308049600|ref|YP_003913166.1| 23S rRNA m(2)G-2445 methyltransferase [Ferrimonas balearica DSM
9799]
gi|307631790|gb|ADN76092.1| 23S rRNA m(2)G-2445 methyltransferase [Ferrimonas balearica DSM
9799]
Length = 700
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 22/130 (16%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
+ + I+ + ++ LE P + D IF DPP F
Sbjct: 587 EHRFIQADCLAWLEACP-EQFDFIFIDPP---------------TFSNSKRMEKTFDVQR 630
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPN 139
+ +R+L P G + + + ++ L N + ++
Sbjct: 631 DHLWLM----TQLKRILAPGGEILFSNNKRHFKMDEEGIRELGLVAKN--ITAQTQSPDF 684
Query: 140 FRGRRFQNAH 149
R ++ NA
Sbjct: 685 ARNKQIHNAW 694
>gi|219113215|ref|XP_002186191.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583041|gb|ACI65661.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 305
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEMK 254
RN G +HPT L + + + G+++LD GSG A R IG++++
Sbjct: 97 RNGWGTGVHPT---TRLCLDWICQTVQNGNVVLDYGCGSGILSVAALHNGARRCIGVDVE 153
Query: 255 QDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
+ + + R + + L + P
Sbjct: 154 AEAL-VTASRNVQINGFDDSTFAGLHVREVLPY 185
>gi|298293869|ref|YP_003695808.1| methyltransferase [Starkeya novella DSM 506]
gi|296930380|gb|ADH91189.1| methyltransferase [Starkeya novella DSM 506]
Length = 185
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
+I + ++ + E L + S DL+F DPPY L + +LV A W
Sbjct: 98 RIFRRDATKLGEALASDSFDLVFCDPPYGRGL------AEKALVSARDGKW 142
>gi|237749288|ref|ZP_04579768.1| DNA-methyltransferase [Oxalobacter formigenes OXCC13]
gi|229380650|gb|EEO30741.1| DNA-methyltransferase [Oxalobacter formigenes OXCC13]
Length = 287
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 2 SQKNSLAINENQNSIFEWKDKI--IKGNSISVLEK----LPAKSVDLIFADPPYNLQLNG 55
++ + + I + KI +++ +L+ L KS LI+ DPPY ++ G
Sbjct: 145 ARYKKDVLKKRIEEIAKLSHKISVYNEDALQLLKNCPTFLKEKS--LIYLDPPYYIKGKG 202
>gi|67594709|ref|XP_665844.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656693|gb|EAL35614.1| hypothetical protein Chro.50400 [Cryptosporidium hominis]
Length = 415
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 30/85 (35%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
++ K DI+ DPF G+G A + G ++ I+ + + +
Sbjct: 162 CNIAQVKKNDIVFDPFCGTGGILISASHFGATCFGSDLDLRVINGWFCSYVNPHMIKDKS 221
Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQ 300
+ K + L G+I+
Sbjct: 222 IQEDHSKSIYSNFDYYKLERPGIIR 246
>gi|317497450|ref|ZP_07955770.1| methyltransferase domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
gi|291559334|emb|CBL38134.1| Predicted O-methyltransferase [butyrate-producing bacterium SSC/2]
gi|316895236|gb|EFV17398.1| methyltransferase domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 220
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 13 QNSIFEWKD-------KIIKGNSISVLEKLPAKSVDLIFAD 46
+ + K+ +++G++I +L+ L S DLIF D
Sbjct: 92 KKAKENIKNQGKEEQITLLEGDAIEILKGL-DGSFDLIFVD 131
>gi|282164277|ref|YP_003356662.1| putative DNA methylase [Methanocella paludicola SANAE]
gi|282156591|dbj|BAI61679.1| putative DNA methylase [Methanocella paludicola SANAE]
Length = 204
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 24/151 (15%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
G+ I L + S+DLI PPY + + ++ SS + +
Sbjct: 50 GD-IRNLGDINENSIDLIVTHPPY-----LNIIKYSEGKIEG---DLSNISSLKKFCDEL 100
Query: 86 RAWLLACRRVLKPNG-TLWVIGSYHNIFRIGTMLQNLNFWILNDIV---------WRKSN 135
+ RVLK + +IG + + L++
Sbjct: 101 ELGIKEFYRVLKEDSYCAILIGDTRRAKHYIPLSYYVMQKFLDNNFVLKEDIIKAQHNCE 160
Query: 136 PMPNFRG-----RRFQNAHETLIWASPSPKA 161
P ++G + AHE L +
Sbjct: 161 STPYWKGQAKKLNIYLIAHEHLYVFRKPREH 191
>gi|134046552|ref|YP_001098037.1| putative RNA methylase [Methanococcus maripaludis C5]
gi|132664177|gb|ABO35823.1| putative RNA methylase [Methanococcus maripaludis C5]
Length = 350
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 204 HPTQKPEALLSRILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
HP L +R LV+ + K +I+LDPF G+G A L IG ++ + + A
Sbjct: 184 HPGCIMPKL-ARCLVNLSRVKEREIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVKGA 242
Query: 262 TKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQ 309
+ + ++ V++ K+ + + L E G+ + I+T+
Sbjct: 243 ILNLKTY----DLSKQVISIKQNDAKNVSKYLEELGIEKIDGIVTDPP 286
>gi|309809210|ref|ZP_07703080.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
gi|308170444|gb|EFO72467.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
Length = 395
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
LLS I +LDPF GSGT+ +A++L + +GI++ ++ +
Sbjct: 43 QLLSVISKHLNNKNISLLDPFCGSGTTLVIAQELGINSVGIDINPYATLLSFVKTHQYNR 102
Query: 271 LGNIELTVLTGKRTEPRVAF 290
+ + E F
Sbjct: 103 TDVCDAISIIKNNLEQESNF 122
>gi|289192387|ref|YP_003458328.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
gi|288938837|gb|ADC69592.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
Length = 389
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLY 58
N N+I + K + I+GN+ V++++ + D++ DPP Q +
Sbjct: 256 NMKLNNIPKDKYEFIEGNAFEVMKEMIEDGEKFDVVILDPPAFTQTEEDVK 306
>gi|167767368|ref|ZP_02439421.1| hypothetical protein CLOSS21_01887 [Clostridium sp. SS2/1]
gi|167711343|gb|EDS21922.1| hypothetical protein CLOSS21_01887 [Clostridium sp. SS2/1]
Length = 220
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 13 QNSIFEWKD-------KIIKGNSISVLEKLPAKSVDLIFAD 46
+ + K+ +++G++I +L+ L S DLIF D
Sbjct: 92 KKAKENIKNQGKEEQITLLEGDAIEILKGL-DGSFDLIFVD 131
>gi|315506349|ref|YP_004085236.1| methyltransferase type 12 [Micromonospora sp. L5]
gi|315412968|gb|ADU11085.1| Methyltransferase type 12 [Micromonospora sp. L5]
Length = 201
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 12/118 (10%)
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPL--- 271
R+L + PG +LD G+G A + +G++ ++ A R P
Sbjct: 38 RLLDALVPPGARVLDAGCGTGRVAAALAARGHNVVGVDADPTLVEAA--RADHPGPRFLV 95
Query: 272 -GNIELTVLTGKRTEPRVA---FNLLVERGLIQPGQILTNAQGNISATVCADGTLISG 325
EL + EP A ++ + PG + ++A V DG ++ G
Sbjct: 96 ADLAELDLAAQGEAEPFDAAVLAGNVMV--FVAPGTE-RDVLARVAAHVRPDGLVVVG 150
>gi|225022944|ref|ZP_03712136.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
ATCC 33806]
gi|305681942|ref|ZP_07404746.1| putative site-specific DNA-methyltransferase (adenine-specific)
[Corynebacterium matruchotii ATCC 14266]
gi|224944167|gb|EEG25376.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
ATCC 33806]
gi|305658415|gb|EFM47918.1| putative site-specific DNA-methyltransferase (adenine-specific)
[Corynebacterium matruchotii ATCC 14266]
Length = 571
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
++I+G+ + LP SVD+I +PPY
Sbjct: 99 QVIQGDFLLHQRNLPTHSVDIIITNPPY 126
>gi|254168357|ref|ZP_04875202.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
T469]
gi|289595781|ref|YP_003482477.1| putative RNA methylase [Aciduliprofundum boonei T469]
gi|197622638|gb|EDY35208.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
T469]
gi|289533568|gb|ADD07915.1| putative RNA methylase [Aciduliprofundum boonei T469]
Length = 310
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E R K+ +P L ++ ++ K G ILDPF G+G+ + G
Sbjct: 138 ESRRAKNLPISYPITMHPRLARAMINLARVKKGARILDPFCGTGSILIEGALIGMKMYGS 197
Query: 252 EMKQDYIDIATKRIASV 268
++ + + + +
Sbjct: 198 DIDERMLKASQTNLKRF 214
>gi|261403135|ref|YP_003247359.1| adenine-specific DNA methylase [Methanocaldococcus vulcanius M7]
gi|261370128|gb|ACX72877.1| adenine-specific DNA methylase [Methanocaldococcus vulcanius M7]
Length = 703
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 25/213 (11%), Positives = 55/213 (25%), Gaps = 24/213 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQ------------------LYRPDHSL 64
+ ++ L+K+ VDL+ DPPY +N P
Sbjct: 456 VYCMDAQD-LDKIVKDKVDLVITDPPYFDSINYSEVYEFFYVWLKLALDYECFKNPSAIN 514
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
+ + + E + VLK NG + ML+ +
Sbjct: 515 QNEAIVNEIQNKDKEHFKKILTNIFRKSANVLKDNGMFIFTFHDFSKEAWVDMLEIVKKA 574
Query: 125 ILNDIVWRKSNPMPNFRGRRFQNAHET--LIWASPSPKAKGYTFNYDALKAANEDVQMRS 182
L+ + G + K +++ +++
Sbjct: 575 GLSVKKIHFYHGENVSAGHFGGQKSVFDGIWVCKKEKIEKVSISVEESIDLVWKEIDHLI 634
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
D + +++ K+ K + +
Sbjct: 635 DEIKKSKYFKL---DENDIKIFVYGKCVEIYEK 664
>gi|66356850|ref|XP_625603.1| MJ0710-like (thump + methylase domains). RNA methylase
[Cryptosporidium parvum Iowa II]
gi|46226600|gb|EAK87588.1| MJ0710-like (thump + methylase domains). RNA methylase
[Cryptosporidium parvum Iowa II]
Length = 501
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 30/85 (35%)
Query: 216 ILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE 275
++ K DI+ DPF G+G A + G ++ I+ + + +
Sbjct: 250 CNIAQVKKNDIVFDPFCGTGGILISASHFGATCFGSDLDLRVINGWFCSYVNPHMIKDQS 309
Query: 276 LTVLTGKRTEPRVAFNLLVERGLIQ 300
+ K + L G+I+
Sbjct: 310 IKEDHSKSIYSNFDYYKLERPGIIR 334
>gi|313108343|ref|ZP_07794375.1| hypothetical protein PA39016_001330069 [Pseudomonas aeruginosa
39016]
gi|310880877|gb|EFQ39471.1| hypothetical protein PA39016_001330069 [Pseudomonas aeruginosa
39016]
Length = 725
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 3 QKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
K L S+ + DK ++ G+ + L + +LIF DPP
Sbjct: 596 SKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP---------TFS 645
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ ++ V D L L P G L+ ++
Sbjct: 646 NSKRMEGVFD----------VQRDHVELLDLAMARLAPGGVLYFSNNFRK 685
>gi|307944065|ref|ZP_07659406.1| gp77 [Roseibium sp. TrichSKD4]
gi|307772411|gb|EFO31631.1| gp77 [Roseibium sp. TrichSKD4]
Length = 305
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 41/105 (39%)
Query: 154 WASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL 213
K + ++ K ED+ + + +K + + + L
Sbjct: 23 RWWQDRKRQWLDLGIESGKGRKEDLLKGYAVSMARWHQIQGQDHKPADWMEKSVFDPVLT 82
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
++ + G +LDPF G G V+ L R+++G+++ ++ I
Sbjct: 83 ELLVAWFSPKGGRVLDPFAGGSVRGIVSALLGRTYLGVDISEEQI 127
>gi|296388457|ref|ZP_06877932.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas aeruginosa PAb1]
Length = 464
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 3 QKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
K L S+ + DK ++ G+ + L + +LIF DPP
Sbjct: 335 SKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP---------TFS 384
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ ++ V D L L P G L+ ++
Sbjct: 385 NSKRMEGVFD----------VQRDHVELLDLAMARLAPGGVLYFSNNFRK 424
>gi|256846784|ref|ZP_05552239.1| type III restriction-modification system methylation subunit
[Fusobacterium sp. 3_1_36A2]
gi|256717750|gb|EEU31308.1| type III restriction-modification system methylation subunit
[Fusobacterium sp. 3_1_36A2]
Length = 379
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 197 NKDGEKLHP-TQKPEALLSRILVS--STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+K+G+ +P +KP L++RI+ + + DI++D F GS T+ A+ +
Sbjct: 118 SKEGDVSYPNAKKPLKLMNRIIKAVLFLEKDDIVMDFFSGSATT---AEDGGIRKYIMVQ 174
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQIL 305
+ ++ + + ++ ++ K + + + + + + + G+ +
Sbjct: 175 LPENLEHSLAITTDDKTKKLLKESINFLKNLKKPLFISEIGKERIRRAGEKI 226
>gi|253682310|ref|ZP_04863107.1| O-methyltransferase family protein [Clostridium botulinum D str.
1873]
gi|253562022|gb|EES91474.1| O-methyltransferase family protein [Clostridium botulinum D str.
1873]
Length = 218
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 3 QKNSLAINENQNSIFEW----KDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++ +N +N+I ++ K KI++G+ + +L + + DLIF D
Sbjct: 87 ERDDDMVNIAKNNIVKYGFDDKIKILQGDCLEILPGI-DEQFDLIFMD 133
>gi|209526221|ref|ZP_03274751.1| N-6 DNA methylase [Arthrospira maxima CS-328]
gi|209493318|gb|EDZ93643.1| N-6 DNA methylase [Arthrospira maxima CS-328]
Length = 485
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 21/86 (24%)
Query: 23 IIKGNSISVLEKLPAK----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
++ G+S+S P D+I +PP+ + G RP S ++ +K +F
Sbjct: 240 VMCGDSLS-----PDGESLGKADVILTNPPFGTKKGGG--RPTRSDFSVTAETSNKQLAF 292
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWV 104
+ R LKP G V
Sbjct: 293 VEHI----------YRALKPGGRAAV 308
>gi|218890752|ref|YP_002439616.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas aeruginosa
LESB58]
gi|254241751|ref|ZP_04935073.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195129|gb|EAZ59192.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218770975|emb|CAW26740.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
Length = 725
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 3 QKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
K L S+ + DK ++ G+ + L + +LIF DPP
Sbjct: 596 SKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP---------TFS 645
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ ++ V D L L P G L+ ++
Sbjct: 646 NSKRMEGVFD----------VQRDHVELLDLAMARLAPGGVLYFSNNFRK 685
>gi|116054427|ref|YP_790124.1| hypothetical protein PA14_24675 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115589648|gb|ABJ15663.1| hypothetical protein PA14_24675 [Pseudomonas aeruginosa UCBPP-PA14]
Length = 343
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 3 QKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
K L S+ + DK ++ G+ + L + +LIF DPP
Sbjct: 214 SKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP---------TFS 263
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ ++ V D L L P G L+ ++
Sbjct: 264 NSKRMEGVFD----------VQRDHVELLDLAMARLAPGGVLYFSNNFRK 303
>gi|107102598|ref|ZP_01366516.1| hypothetical protein PaerPA_01003662 [Pseudomonas aeruginosa PACS2]
Length = 719
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 3 QKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
K L S+ + DK ++ G+ + L + +LIF DPP
Sbjct: 590 SKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP---------TFS 639
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ ++ V D L L P G L+ ++
Sbjct: 640 NSKRMEGVFD----------VQRDHVELLDLAMARLAPGGVLYFSNNFRK 679
>gi|77918673|ref|YP_356488.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
gi|77544756|gb|ABA88318.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
Length = 398
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAK--SVDLIFADPP 48
N + + + + G+ +VL+ L + S D+I DPP
Sbjct: 268 NRLNPKRHEFLVGDCRNVLKDLQRQGRSFDVIIMDPP 304
>gi|15598244|ref|NP_251738.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas aeruginosa PAO1]
gi|81857122|sp|Q9HZG0|RLML_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|9949153|gb|AAG06436.1|AE004729_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 725
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 3 QKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
K L S+ + DK ++ G+ + L + +LIF DPP
Sbjct: 596 SKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLRE-DDGQYELIFIDPP---------TFS 645
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ ++ V D L L P G L+ ++
Sbjct: 646 NSKRMEGVFD----------VQRDHVELLDLAMARLAPGGVLYFSNNFRK 685
>gi|300705257|ref|YP_003746860.1| hypothetical protein RCFBP_21099 [Ralstonia solanacearum CFBP2957]
gi|299072921|emb|CBJ44277.1| conserved protein of unknown function, methylase putative
[Ralstonia solanacearum CFBP2957]
Length = 221
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
I+ G++ + L + + DL+F DPP+
Sbjct: 123 IVSGDAFAWLARQADGAFDLVFIDPPF 149
>gi|207742234|ref|YP_002258626.1| hypothetical protein RSIPO_00415 [Ralstonia solanacearum IPO1609]
gi|206593622|emb|CAQ60549.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
Length = 223
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
I+ G++ + L + + DL+F DPP+
Sbjct: 125 IVSGDAFAWLARQADGAFDLVFIDPPF 151
>gi|207727830|ref|YP_002256224.1| hypothetical protein 1177 [Ralstonia solanacearum MolK2]
gi|206591071|emb|CAQ56683.1| conserved hypothetical protein 1177 [Ralstonia solanacearum MolK2]
Length = 192
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
I+ G++ + L + + DL+F DPP+
Sbjct: 94 IVSGDAFAWLARQADGAFDLVFIDPPF 120
>gi|83746834|ref|ZP_00943881.1| Methyltransferase [Ralstonia solanacearum UW551]
gi|83726419|gb|EAP73550.1| Methyltransferase [Ralstonia solanacearum UW551]
Length = 218
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
I+ G++ + L + + DL+F DPP+
Sbjct: 120 IVSGDAFAWLARQADGAFDLVFIDPPF 146
>gi|239944288|ref|ZP_04696225.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
gi|239990743|ref|ZP_04711407.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
gi|291447756|ref|ZP_06587146.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
gi|291350703|gb|EFE77607.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
Length = 281
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ KG+++S L +L VDL+ ++PPY
Sbjct: 161 TVHKGDALSALPEL-DGQVDLVISNPPY 187
>gi|218442045|ref|YP_002380374.1| hypothetical protein PCC7424_5156 [Cyanothece sp. PCC 7424]
gi|218174773|gb|ACK73506.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
Length = 393
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ + Q L+ IL S +ILDPF GSGT A L G E+
Sbjct: 18 KTRSNLFAWRGQFSPQLIEVILNSYCLSNSVILDPFAGSGTVLLEAGILELEAYGFEINP 77
Query: 256 DYIDI--ATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
+ + I + Q +++ R P + F+ V+
Sbjct: 78 AAWILSKIYEFINNYQRKESVKTIRKLIDREFPFIIFDNDVQ 119
>gi|145352834|ref|XP_001420740.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580975|gb|ABO99033.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 411
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 227 ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+LDPF G GT+ A+ L +G ++ ++ R + + +L RT
Sbjct: 51 VLDPFAGGGTTLVCAQTLGWRAVGADVSPLACFVSANR--NWRASEEEVEVMLESART 106
>gi|284054076|ref|ZP_06384286.1| hypothetical protein AplaP_21746 [Arthrospira platensis str.
Paraca]
Length = 543
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 30/118 (25%)
Query: 30 SVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDHSLVDAVTDSWDK 74
L + KSVD+I DPPY L++ PD V+ +
Sbjct: 128 DSLWHIGDKSVDVIVTDPPYYGTIQYAELSDFFYIWLKITLGDIFPDLFYVELTDKDREA 187
Query: 75 FSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
++ + Y+A RVL+ +G + V ++ + +
Sbjct: 188 VANPSRFRNMGISPDELANQDYEAKMALAFGEYHRVLRDDGIMTVQFNHKDSGAWDVL 245
>gi|158335208|ref|YP_001516380.1| methyltransferase [Acaryochloris marina MBIC11017]
gi|158305449|gb|ABW27066.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
Length = 181
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
++++G+ + L KL ++S D I+ DPPY+ L G
Sbjct: 92 QVLRGDVVKRLAKLQSQSFDRIYFDPPYDGGLYG 125
>gi|260880996|ref|ZP_05893281.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
gi|260850142|gb|EEX70149.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
Length = 335
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 166 FNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSS--TKP 223
+N D D G+ L ++ P K + +L
Sbjct: 51 WNDDEEIDKEPKSMWVRDCHDASTYGTNLLSKFLPKRNFPFPKSLYAVEDVLKFYVGENK 110
Query: 224 GDIILDPFFGSGTSGAVAKKLR------RSFIGIEMK 254
+I+D F GSGT+ L R I +
Sbjct: 111 DALIVDFFSGSGTTLHAVNLLNAEDGGHRRCIMVTNN 147
>gi|194290733|ref|YP_002006640.1| ribosomal protein l11 methyltransferase [Cupriavidus taiwanensis
LMG 19424]
gi|226710068|sp|B3R6K3|PRMA_CUPTR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|193224568|emb|CAQ70579.1| Ribosomal protein L11 methyltransferase [Cupriavidus taiwanensis
LMG 19424]
Length = 297
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L + L + PG+ +LD GSG VA+KL +GI++ + +
Sbjct: 145 GTGSHPT---TRLCMQWLEQNLTPGETVLDYGCGSGILAIVARKLGAGDTVGIDIDPNAV 201
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ + R + + + + ++ + +SA V A
Sbjct: 202 EAS--RYNAERNHVEASFALPESVSDASYDLVVANILSNPLKLMAAM------LSARVRA 253
Query: 319 DGTLI 323
G L+
Sbjct: 254 GGRLV 258
>gi|311280150|ref|YP_003942381.1| rRNA (guanine-N(2)-)-methyltransferase [Enterobacter cloacae SCF1]
gi|308749345|gb|ADO49097.1| rRNA (guanine-N(2)-)-methyltransferase [Enterobacter cloacae SCF1]
Length = 701
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 20/89 (22%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + + L + + DLIF DPP D F
Sbjct: 590 HRLLQADVLGWLRE-SDEQFDLIFIDPP---------------TFSNSKRMADTFDVQRD 633
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +R+L+ GT+ +
Sbjct: 634 HLNLMTD----LKRLLRKGGTIMFSNNKR 658
>gi|290473848|ref|YP_003466722.1| putative methyltransferase [Xenorhabdus bovienii SS-2004]
gi|289173155|emb|CBJ79928.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
methyltransferase domain [Xenorhabdus bovienii SS-2004]
Length = 705
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 20/96 (20%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + ++I+ + + L + + DLIF DPP D
Sbjct: 583 NGLSGRQHRLIQADCLGWLAQ-SREQFDLIFIDPP---------------TFSNSKRMED 626
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
F + + +L+ GTL +
Sbjct: 627 SFDVQRDHITLM----KQLKCLLRRGGTLMFSNNKR 658
>gi|262275775|ref|ZP_06053584.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Grimontia hollisae
CIP 101886]
gi|262219583|gb|EEY70899.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Grimontia hollisae
CIP 101886]
Length = 710
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + + L DLIF DPP D F +
Sbjct: 601 QADCLKWLST-AKGQYDLIFIDPP---------------TFSNSKRMLDTFDVQRDHIKL 644
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
+R+L+ +G + + N L+ L + + +S PM R +
Sbjct: 645 MTG----LKRLLRQDGEIVFSNNKRNFKMDTEALEALG--LKAQNITSRSIPMDFERNQH 698
Query: 145 FQNAH 149
N
Sbjct: 699 IHNCW 703
>gi|299065664|emb|CBJ36837.1| Ribosomal protein L11 methyltransferase [Ralstonia solanacearum
CMR15]
Length = 298
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L +PG+ LD GSG VAKKL +G+++ + +
Sbjct: 145 GTGSHPT---TRLCMEWLEQHVQPGERTLDYGCGSGILAIVAKKLGTGETVGVDIDPNAV 201
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ + + L P F+L+V L P L + A V
Sbjct: 202 EASRYNAERNRVEAGFSLPD-----DAPEGTFDLVVANILSNP---LKLMAAMLCARVRP 253
Query: 319 DGTLI-SGTELGSIHRVGAKVSGS 341
G L+ SG V A +G+
Sbjct: 254 GGRLVLSGVLERQAEEVAAAYAGA 277
>gi|308273139|emb|CBX29742.1| hypothetical protein N47_F14370 [uncultured Desulfobacterium sp.]
Length = 187
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 12/130 (9%)
Query: 194 RLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG-IE 252
+L + +G K+ PT ++S G ++LD F G+G G A SF I+
Sbjct: 15 KLFSINGLKIRPTSGRLRESIFNILSDQVVGSVVLDLFAGTGAMGIEALSRGASFAAFID 74
Query: 253 MKQDYIDIATKRIASVQPLGNIELTVL----TGKRTEPRVAFNLLVE------RGLIQPG 302
++ I K I + R ++ LV R LI P
Sbjct: 75 KDKEAISTIIKNINICGLAERSTIAKFDILKDINRYANKLTAANLVFIDPPYNRNLITP- 133
Query: 303 QILTNAQGNI 312
+++ ++ I
Sbjct: 134 ALISLSKSRI 143
>gi|323340650|ref|ZP_08080902.1| methyltransferase [Lactobacillus ruminis ATCC 25644]
gi|323091773|gb|EFZ34393.1| methyltransferase [Lactobacillus ruminis ATCC 25644]
Length = 196
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFI 249
G RL+ G K PT ++ G +LD F GSG A
Sbjct: 8 FGGRRLKAVPGMKTRPTTDKVKESMFNIIGPYLNGGNVLDLFGGSGGLSIEAVSRGADSA 67
Query: 250 G-IEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
I+ + I + I + + +
Sbjct: 68 TLIDRQYQAIKTINENIEVTKSKEKFRIIKGDTNK 102
>gi|158314367|ref|YP_001506875.1| hypothetical protein Franean1_2539 [Frankia sp. EAN1pec]
gi|158109772|gb|ABW11969.1| conserved hypothetical protein [Frankia sp. EAN1pec]
Length = 270
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
++PGD + DP G GT A A RR +GI D + A
Sbjct: 56 YSQPGDTVCDPDCGPGTVVAEAVHARRHAVGITTDPDRWETA 97
>gi|307262525|ref|ZP_07544169.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306867780|gb|EFM99612.1| Type III restriction-modification system methylation subunit
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 365
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
D G+ L+ K + + ++ IILD F GSGT+
Sbjct: 57 WYGDRYDASSKGTNILKAIVPNSGFDYPKSIYQVQDSIHINSLKESIILDYFAGSGTTAH 116
Query: 240 VAKK------LRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLL 293
R +I +E +Y D ++P + K +P+
Sbjct: 117 AVINLNREDGGNRKYILVEQG-EYFDT------VLKPRVQKVIFAKEWKDGKPQADNGAF 169
>gi|284097716|ref|ZP_06385728.1| DNA modification methyltransferase [Candidatus Poribacteria sp.
WGA-A3]
gi|283830773|gb|EFC34871.1| DNA modification methyltransferase [Candidatus Poribacteria sp.
WGA-A3]
Length = 272
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
++ ++ + E L +SVD + PPY + +
Sbjct: 82 QVFLADARQIPEILEPESVDAVITSPPYPNEKDY 115
>gi|227326889|ref|ZP_03830913.1| putative type I restriction-modification system methyltransferase
subunit [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 717
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD---AVTDSWDKFSSF 78
+I ++ + L S DLI +PP+ + +S + + F
Sbjct: 434 QIFYTDNSLTTKALQPNSFDLICTNPPFGTPKFDKGKNGQNSKANYEANMEQVLGGFRPT 493
Query: 79 EAYDAFTRAWLLACRRVLKPNG 100
+ AW + + G
Sbjct: 494 QKVVDSYNAWYDHVKMKWQDIG 515
>gi|21672626|ref|NP_660693.1| 23S rRNA m(2)G2445 methyltransferase [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091599|sp|Q8K9I4|RLML_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|21623259|gb|AAM67904.1| hypothetical 78.9 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 697
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 20/140 (14%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N + N++ K+ I+ + + + DLIF +PP
Sbjct: 577 NMSINNLINSKNIFIQKDCLEWIIS-TKNKFDLIFINPP---------------TFSNSK 620
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDI 129
F Y +++L+ +G + S HN ++ +N +
Sbjct: 621 RMKKSFELKRDYIKLMIN----LKQILRKDGNIIFSSSTHNFEIDLNNIKKINLYAKKIT 676
Query: 130 VWRKSNPMPNFRGRRFQNAH 149
K+ + H
Sbjct: 677 NLVKTKDFLKKNYHSWLIKH 696
>gi|229496524|ref|ZP_04390238.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
gi|229316421|gb|EEN82340.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
Length = 403
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 27 NSISVLEKLPAKSVDLIFADPP 48
++ L+ + S DLI DPP
Sbjct: 288 DAFEYLKGIAKGSFDLIVLDPP 309
>gi|302521936|ref|ZP_07274278.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces sp. SPB78]
gi|318060717|ref|ZP_07979440.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
[Streptomyces sp. SA3_actG]
gi|318075508|ref|ZP_07982840.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
[Streptomyces sp. SA3_actF]
gi|333024404|ref|ZP_08452468.1| putative methyltransferase [Streptomyces sp. Tu6071]
gi|302430831|gb|EFL02647.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces sp. SPB78]
gi|332744256|gb|EGJ74697.1| putative methyltransferase [Streptomyces sp. Tu6071]
Length = 281
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+ G++ + L +L VDL+ ++PPY
Sbjct: 162 LHHGDAFAALPEL-DGQVDLVISNPPY 187
>gi|298208825|ref|YP_003717004.1| hypothetical protein CA2559_11313 [Croceibacter atlanticus
HTCC2559]
gi|83848752|gb|EAP86621.1| hypothetical protein CA2559_11313 [Croceibacter atlanticus
HTCC2559]
Length = 411
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 6 SLAINENQNSIFEWK--DKIIKGNSISVLEKL--PAKSVDLIFADPP 48
+LA+ + ++ + K II+G++ L++L + D++ DPP
Sbjct: 272 ALAVAKENATLNDHKGTHHIIEGDAFEKLQQLIQKNRKFDVVVIDPP 318
>gi|194334013|ref|YP_002015873.1| hypothetical protein Paes_1197 [Prosthecochloris aestuarii DSM 271]
gi|194311831|gb|ACF46226.1| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271]
Length = 394
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 24 IKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQL 57
++G++ V++ L + S DL+ DPP + L
Sbjct: 272 LQGDAFDVMKNLIKEGKSYDLVILDPPSFTKSRKNL 307
>gi|288941338|ref|YP_003443578.1| DNA methylase N-4/N-6 domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288896710|gb|ADC62546.1| DNA methylase N-4/N-6 domain protein [Allochromatium vinosum DSM
180]
Length = 396
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 24/68 (35%)
Query: 196 RNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+++ Q + IL ++DPF GSGT A + GIE+
Sbjct: 14 KSRSNIFNWRGQFTPQFVDYILEEFATNASAVIDPFCGSGTVLLEAASRNIAGFGIELNP 73
Query: 256 DYIDIATK 263
+A
Sbjct: 74 AAYAMAKF 81
>gi|262039996|ref|ZP_06013261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042664|gb|EEW43670.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 701
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 25/132 (18%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++I+ + + L + + DLIF DPP D F
Sbjct: 590 HRLIQADVLGWLRE-STEQFDLIFIDPP---------------TFSNSKRMEDAFDVQRD 633
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + G + + L V S +
Sbjct: 634 HIRLMTD----LKRLLRKGGTIMFSNNKR-----GFRMDHDGLAALGLKVQEISQKTLSQ 684
Query: 141 RGRRFQNAHETL 152
R + H
Sbjct: 685 DFARNRQIHNCW 696
>gi|126666733|ref|ZP_01737710.1| hypothetical protein MELB17_19806 [Marinobacter sp. ELB17]
gi|126628778|gb|EAZ99398.1| hypothetical protein MELB17_19806 [Marinobacter sp. ELB17]
Length = 398
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 24 IKGNSISVLEKLPAK--SVDLIFADPP 48
I+G++ L+ L + D++ DPP
Sbjct: 274 IEGDAFDALKALADEKQKFDIVVLDPP 300
>gi|120553745|ref|YP_958096.1| hypothetical protein Maqu_0812 [Marinobacter aquaeolei VT8]
gi|120323594|gb|ABM17909.1| SAM-dependent methyltransferase [Marinobacter aquaeolei VT8]
Length = 398
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 24 IKGNSISVLEKLPA--KSVDLIFADPP 48
I+G++ L+ L + D++ DPP
Sbjct: 274 IEGDAFDALKALADEKEKFDIVVLDPP 300
>gi|313635311|gb|EFS01601.1| putative methyltransferase [Listeria seeligeri FSL N1-067]
Length = 432
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
L S+D++ PPY +++ + + + D
Sbjct: 243 LDDNSIDVVITSPPYCTRIDYAIATRIELAFLGINEKDD 281
>gi|182418924|ref|ZP_02950181.1| O-methyltransferase family protein [Clostridium butyricum 5521]
gi|237667273|ref|ZP_04527257.1| O-methyltransferase, family 3 [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377207|gb|EDT74775.1| O-methyltransferase family protein [Clostridium butyricum 5521]
gi|237655621|gb|EEP53177.1| O-methyltransferase, family 3 [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 214
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFAD 46
KI +G+ + VLE+L DLIF D
Sbjct: 110 KIEQGDCLEVLERL-DDKFDLIFMD 133
>gi|162458247|ref|NP_001105267.1| LOC542178 [Zea mays]
gi|55925643|gb|AAV67950.1| putative phosphoethanolamine N-methyltransferase [Zea mays]
Length = 495
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 44/294 (14%), Positives = 87/294 (29%), Gaps = 42/294 (14%)
Query: 8 AINENQNSIFE-WKDK-IIKGNSI--SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
++ + SI + + + + + ++ + A S+DLIF
Sbjct: 91 SVIKKNGSINDHYGNTSFMCADVTSPDLM--IEANSIDLIF------------------- 129
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV--IGSYHNIFRIGTMLQNL 121
+W + + LK G ++ + +
Sbjct: 130 ------SNWLLMYLSDEEIDKLVER---MVKWLKVGGYIFFRESCFHQSGDTERKFNPTH 180
Query: 122 NFWILNDIVWRKSNPMPNFRGRRFQNA---HETLIWASPSPKAKGYTFNYDALKAANEDV 178
K N G F+ + + + K + ++ED
Sbjct: 181 YREPRFYTKVFKECQTFNQDGTSFKLSLITFKCIGAYVNIKKDQNQICWLWKKVNSSEDG 240
Query: 179 QMRS--DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGS-G 235
+S D + +G R G+ T E + + KPG +LD G G
Sbjct: 241 GFQSFLDNVQYKATGILRYERIFGDGYVSTGGAETTKEFVEKLNLKPGQKVLDVGCGIGG 300
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVA 289
+A+K +GI++ + I A +R + L E+ T K +
Sbjct: 301 GDFYMAEKYGTHVVGIDLSINMIMFALERSIGCKCLVEFEVADCTTKTYPDHMF 354
>gi|307244230|ref|ZP_07526345.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
17678]
gi|306492380|gb|EFM64418.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
17678]
Length = 186
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 22 KIIKGNSISVLEKLP--AKSVDLIFADPPYNLQL 53
+++ G+ L + + DLIF DPPY L
Sbjct: 94 QLVNGDFKKCLRDMETRKQKFDLIFVDPPYYKGL 127
>gi|87309429|ref|ZP_01091564.1| Putative RNA methylase [Blastopirellula marina DSM 3645]
gi|87287737|gb|EAQ79636.1| Putative RNA methylase [Blastopirellula marina DSM 3645]
Length = 308
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 28/82 (34%)
Query: 213 LSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+ ++ +PGD ++D G+G A + E + +D A + +
Sbjct: 41 FREAIEATVRPGDKVVDLGGGTGVLSFFAARAGAEVWYCERNPELVDAAQRILRDNHVSQ 100
Query: 273 NIELTVLTGKRTEPRVAFNLLV 294
+ + P + ++
Sbjct: 101 QVHIVQADAAEFAPPTPVDFVI 122
>gi|194898525|ref|XP_001978827.1| GG12428 [Drosophila erecta]
gi|190650530|gb|EDV47785.1| GG12428 [Drosophila erecta]
Length = 488
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+ + GD++ DPF G+G+ A K +G ++ + A R
Sbjct: 209 QAMVRDGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVH-ARCR 254
>gi|85720923|gb|ABC75873.1| M1.BtsI [Geobacillus thermoglucosidasius]
Length = 532
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 199 DGEKLHPTQKPEALLSRILVSS-TKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
G + + P L+ +L DI+LDPF GSGT+ + L IGIE+
Sbjct: 115 HGWHRYVGRFPPHLVRALLNYFQADSNDIVLDPFVGSGTTLVECRLLGIPAIGIEI 170
>gi|21674725|ref|NP_662790.1| DNA methylase, putative [Chlorobium tepidum TLS]
gi|21647935|gb|AAM73132.1| DNA methylase, putative [Chlorobium tepidum TLS]
Length = 375
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
+ P ++ +K GD I+DPF G +S L R+ +G+E+ T
Sbjct: 24 YYAMFPLEFAFDVVEKYSKNGDYIIDPFAGRCSSIYAGGVLGRNSLGLEINPVGWLYGTV 83
Query: 264 RIASVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
++ P E+ + R +N +++
Sbjct: 84 KL---HPAEKEEVIDRLLEIYSKRNYYNRAIQK 113
>gi|288870617|ref|ZP_06114719.2| modification methylase FokI [Clostridium hathewayi DSM 13479]
gi|288866521|gb|EFC98819.1| modification methylase FokI [Clostridium hathewayi DSM 13479]
Length = 370
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+ + + + +++ + +L++L DL++ DPPYN
Sbjct: 204 KRYQLFQLEVTTNHKENRCYNEDGAELLKRLQG---DLLYIDPPYN 246
>gi|163790320|ref|ZP_02184752.1| methylase, putative [Carnobacterium sp. AT7]
gi|159874391|gb|EDP68463.1| methylase, putative [Carnobacterium sp. AT7]
Length = 190
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SF 248
G +L+ G PT ++ G + LD F GSG A
Sbjct: 8 YGGRKLKAVPGNNTRPTTDKVKESIFNIIGPYFDGGVCLDLFAGSGGLAIEAVSRGMEKA 67
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ I+ I + I+ + ++ R
Sbjct: 68 VLIDQDPLAIKTIKENISVTKEADKFDVYRNDANRA 103
>gi|157150737|ref|YP_001449943.1| modification methylase [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075531|gb|ABV10214.1| modification methylase [Streptococcus gordonii str. Challis substr.
CH1]
Length = 419
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYN 50
+ G + +L + +VDLI PPY
Sbjct: 222 LYIGKAEEILSEFADGTVDLICTSPPYG 249
>gi|315174009|gb|EFU18026.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX1346]
Length = 217
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + + +I G RL+ DG+ PT ++ G + LD + GSG
Sbjct: 28 DKGVETMRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFEGGMALDLYSGSGG 87
Query: 237 SGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
A I IE + + + IA + E+ + R
Sbjct: 88 LAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA 136
>gi|296138794|ref|YP_003646037.1| O-methyltransferase family 3 [Tsukamurella paurometabola DSM 20162]
gi|296026928|gb|ADG77698.1| O-methyltransferase family 3 [Tsukamurella paurometabola DSM 20162]
Length = 220
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFAD 46
++I G+++ VL +L ++ DLIF D
Sbjct: 114 RLINGHALDVLPRLADEAYDLIFID 138
>gi|171185152|ref|YP_001794071.1| putative RNA methylase [Thermoproteus neutrophilus V24Sta]
gi|170934364|gb|ACB39625.1| putative RNA methylase [Thermoproteus neutrophilus V24Sta]
Length = 224
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELT 277
++ KPG + +PF G+G ++ +G ++ + + IA I L ++ L
Sbjct: 87 LARVKPGHRVWEPFVGTGAIAYEVERAGGYVVGGDVDEKALKIAKLNIRGDVVLSDVLLP 146
Query: 278 VLTGKRTEP-RVAFNLLVERGL 298
++ + L +
Sbjct: 147 PVSKFDAVVGDPPYGRLTASAM 168
>gi|307136521|ref|ZP_07495877.1| putative methylation subunit, type III restriction-modification
system [Escherichia coli H736]
Length = 513
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 9/122 (7%)
Query: 155 ASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALL- 213
+ K + A K L GSE L + P+++
Sbjct: 174 WAKRIKGEIQIHYRQAGKPKMRKSVWIGPKLDASTYGSELLNSLFNVTQINFSFPKSIYA 233
Query: 214 -SRILVSSTK-PGDIILDPFFGSGTSGAVAKKLR------RSFIGIEMKQDYIDIATKRI 265
L S + LD F GSGT+G + R F +E + + + R+
Sbjct: 234 VKECLESLSNSKYAHFLDYFAGSGTTGHAVVDMNRDDNGFRKFSLVEQGEYFYSVTLPRV 293
Query: 266 AS 267
Sbjct: 294 KK 295
>gi|312874678|ref|ZP_07734701.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b]
gi|311089805|gb|EFQ48226.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b]
Length = 416
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
+LDPF GSGT+ +A++L + +GI++ ++ +
Sbjct: 50 KHLNNKNITLLDPFCGSGTTLVIAQELGINSVGIDINPYATLLSFVKTNKYDKAD 104
>gi|109898322|ref|YP_661577.1| 23S rRNA m(2)G2445 methyltransferase [Pseudoalteromonas atlantica
T6c]
gi|123360834|sp|Q15UB5|RLML_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|109700603|gb|ABG40523.1| 23S rRNA m(2)G-2445 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 701
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 32/122 (26%)
Query: 1 MSQKNSLAINENQNSIFEW------KDKI------IKGNSISVLEKLPAKSVDLIFADPP 48
+ + S+ + N+ +W +K+ I+ + ++ LE+ D IF DPP
Sbjct: 557 LGKAKSVTTVDMSNTYVDWAKENFALNKLKGPYEFIQADCLTWLER-HNNQYDFIFIDPP 615
Query: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
S + +WD A L + L+P G + +
Sbjct: 616 ------------SFSNSKRMDTTWDVQRDH-------VALLRNAVKCLRPGGEIMFSNNL 656
Query: 109 HN 110
Sbjct: 657 RQ 658
>gi|220935907|ref|YP_002514806.1| putative RNA methylase [Thioalkalivibrio sp. HL-EbGR7]
gi|219997217|gb|ACL73819.1| putative RNA methylase [Thioalkalivibrio sp. HL-EbGR7]
Length = 426
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 24 IKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRP 60
+KG++ VL++L D++ DPP ++ +
Sbjct: 278 VKGDAFEVLKQLREDQARFDVVITDPPAFIKRRKDVKEG 316
>gi|163955070|ref|YP_001648174.1| hypothetical protein OsV5_097f [Ostreococcus virus OsV5]
gi|163638519|gb|ABY27878.1| hypothetical protein OsV5_097f [Ostreococcus virus OsV5]
Length = 341
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYN---LQLNG---QLYRPDH-----SLVDAVTDSWDKF 75
++ L LP VDLI+ DPPYN N L + S V + W+K
Sbjct: 201 DACDFLRDLP--QVDLIYLDPPYNQHPYGSNYFMLNLICTNERPHTVSKVSGIPGDWNKS 258
Query: 76 S 76
Sbjct: 259 Q 259
>gi|315648197|ref|ZP_07901298.1| methyltransferase [Paenibacillus vortex V453]
gi|315276843|gb|EFU40186.1| methyltransferase [Paenibacillus vortex V453]
Length = 205
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 23 IIKGNSISVLEKLPAKSV--DLIFADPPYNLQLNGQL 57
I + ++ L+ L +S DL+F DPPY + +L
Sbjct: 99 IYRNDAARALKALEKRSFKFDLVFLDPPYRFKNGDEL 135
>gi|226356993|ref|YP_002786733.1| methylase [Deinococcus deserti VCD115]
gi|226318983|gb|ACO46979.1| putative methylase [Deinococcus deserti VCD115]
Length = 207
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 25/32 (78%), Gaps = 2/32 (6%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
++++ +++S+L +L S DL+F+DPPY++ +
Sbjct: 107 RVLRADAMSLLPRL--GSFDLVFSDPPYDVDI 136
>gi|171914465|ref|ZP_02929935.1| Methyltransferase small [Verrucomicrobium spinosum DSM 4136]
Length = 233
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 22 KIIKGNSISVLEKLPA--KSVDLIFADPPY 49
K+ K ++ + L +L DL+FADPPY
Sbjct: 99 KVTKADAFAALRRLADTGAKFDLVFADPPY 128
>gi|126173205|ref|YP_001049354.1| peptidase S10 serine carboxypeptidase [Shewanella baltica OS155]
gi|125996410|gb|ABN60485.1| peptidase S10, serine carboxypeptidase [Shewanella baltica OS155]
Length = 513
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
+ +S DL+F DP + D D WD ++ F R WL+ +
Sbjct: 150 SMLDES-DLVFIDP---VGTGFSRALGDKKGA----DFWDVKEDAQSIAEFIRRWLIEHK 201
Query: 94 RVLKP 98
R P
Sbjct: 202 RWNSP 206
>gi|213855632|ref|ZP_03383872.1| type III restriction-modification system enzyme (StyLTI)
modification methylase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 108
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ-NLNFWILNDIVWRKS 134
S+ A+ +F L R++LK G +++ + + M+ V K
Sbjct: 19 STHSAWLSFMYPRLFLARKLLKDTGFIFISIDDNEYANLKLMMDEIFGEGGFVTNVMWKR 78
Query: 135 NPMPNFRGRRFQNAHETLIWASP 157
+ E ++ +
Sbjct: 79 KKEISNDSDNVSIQGEYILVYAK 101
>gi|229915917|ref|YP_002884563.1| hypothetical protein EAT1b_0185 [Exiguobacterium sp. AT1b]
gi|229467346|gb|ACQ69118.1| conserved hypothetical protein [Exiguobacterium sp. AT1b]
Length = 263
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 11 ENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADP 47
E + E +I + NS+ L+ S D I+ DP
Sbjct: 147 EKDEQVNEAMRRIEVVHSNSLDYLKTCADNSFDCIYFDP 185
>gi|313637000|gb|EFS02576.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL S4-171]
Length = 189
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
L+ G PT ++ GD++LD F GSG G A + I+
Sbjct: 17 LKAVPGNNTRPTTDKVKESLFSIIGPFFDGDVVLDLFAGSGGLGIEALSRGAERAVFIDQ 76
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
Q I + S E+ +R + N
Sbjct: 77 AQAAIKTIRLNLESCHFTDRAEVYRNEAERALKLLHKNE 115
>gi|313632466|gb|EFR99485.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL N1-067]
Length = 189
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
L+ G PT ++ GD++LD F GSG G A + I+
Sbjct: 17 LKAVPGNNTRPTTDKVKESLFSIIGPFFDGDVVLDLFAGSGGLGIEALSRGAERAVFIDQ 76
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
Q I + S E+ +R + N
Sbjct: 77 AQAAIKTIRLNLESCHFTDRAEVYRNEAERALKLLHKNE 115
>gi|291166898|gb|EFE28944.1| RNA methyltransferase, RsmD family [Filifactor alocis ATCC 35896]
Length = 187
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 22 KIIKGNSISVLEKLPA--KSVDLIFADPPY 49
I G+ L K+ D+IF DPPY
Sbjct: 94 TIFCGDYRDFLAKINKTGNKFDIIFVDPPY 123
>gi|289435394|ref|YP_003465266.1| methyltransferase, putative [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171638|emb|CBH28184.1| methyltransferase, putative [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 185
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
L+ G PT ++ GD++LD F GSG G A + I+
Sbjct: 13 LKAVPGNNTRPTTDKVKESLFSIIGPFFDGDVVLDLFAGSGGLGIEALSRGAERAVFIDQ 72
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
Q I + S E+ +R + N
Sbjct: 73 AQAAIKTIRLNLESCHFTDRAEVYRNEAERALKLLHKNE 111
>gi|68249879|ref|YP_248991.1| hypothetical protein NTHI1522 [Haemophilus influenzae 86-028NP]
gi|68058078|gb|AAX88331.1| hypothetical protein NTHI1522 [Haemophilus influenzae 86-028NP]
Length = 319
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
L + + G ILDPF G G VA KL R++IG++++ + I+
Sbjct: 225 LCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEA 273
>gi|241762635|ref|ZP_04760707.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|241372773|gb|EER62485.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 487
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 23/99 (23%)
Query: 20 KDKIIKG-----NSISVLEKLPAK----SVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
+ ++ G +I L P +LI +PP+ + G RP S D
Sbjct: 223 MNLLLHGIEGGVENIDTLS--PDGEALPKANLILTNPPFGTKKGGG--RPTRSDFSITAD 278
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ +K +F + R L P G V+ +
Sbjct: 279 TSNKQLAFVEHIV----------RALSPGGRAAVVIPDN 307
>gi|291568732|dbj|BAI91004.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 965
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 30/118 (25%)
Query: 30 SVLEKLPAKSVDLIFADPPY---------------NLQLNGQLYRPDHSLVDAVTDSWDK 74
L + KSVD+I DPPY L++ PD V+ +
Sbjct: 550 DSLWHIGDKSVDVIVTDPPYYGTIQYAELSDFFYIWLKITLGDIFPDLFYVELTDKDREA 609
Query: 75 FSS---------------FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTM 117
++ + Y+A RVL+ +G + V ++ + +
Sbjct: 610 VANPSRFRNMGISPDELANQDYEAKMALAFGEYHRVLRDDGIMTVQFNHKDSGAWDVL 667
>gi|110636123|ref|YP_676331.1| putative RNA methylase [Mesorhizobium sp. BNC1]
gi|110287107|gb|ABG65166.1| putative RNA methylase [Chelativorans sp. BNC1]
Length = 495
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
PG +LDPF GSGT+ R G ++ + IA ++
Sbjct: 116 PGQRVLDPFCGSGTTLVECAHSRAIGYGTDINPLAVYIAQAKLQ 159
>gi|291286949|ref|YP_003503765.1| putative RNA methylase [Denitrovibrio acetiphilus DSM 12809]
gi|290884109|gb|ADD67809.1| putative RNA methylase [Denitrovibrio acetiphilus DSM 12809]
Length = 398
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPP 48
++I G++ +EKL ++ DPP
Sbjct: 277 HRLICGDAFEEMEKLRKNGEKFGMVIVDPP 306
>gi|221061743|ref|XP_002262441.1| methyltransferase [Plasmodium knowlesi strain H]
gi|193811591|emb|CAQ42319.1| methyltransferase, putative [Plasmodium knowlesi strain H]
Length = 695
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 8/181 (4%)
Query: 39 SVDLIFADPP---YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
D+I DPP Y + L + ++ + D + + Y L ++
Sbjct: 439 KFDVILIDPPWKEYYDRKIHNLDLLNSMHIENYDLNGDINNDKDKYWTVDDLASLEIDKI 498
Query: 96 LKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
L++ ++ +L + DI W K+N + ++ N
Sbjct: 499 ADVPSFLFIWCGVTHLEDARILLSKWGYRRCEDICWLKTNIKETNKKIKYLNEINNENSY 558
Query: 156 SPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSR 215
A++ + + + ++ + + + E ++ KPE L
Sbjct: 559 LQRTTEHCLVGIKGAVRRSYDIHFIHANLDTDVI-----IAEETDENIYNNNKPEELYKI 613
Query: 216 I 216
I
Sbjct: 614 I 614
>gi|188590046|ref|YP_001921146.1| putative modification methylase [Clostridium botulinum E3 str.
Alaska E43]
gi|188500327|gb|ACD53463.1| putative modification methylase [Clostridium botulinum E3 str.
Alaska E43]
Length = 453
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 23 IIKGNSISVLEK-LPAKSVDLIFADPPYN 50
I GNS +++ S+ LI PPY
Sbjct: 245 IYLGNSFDIIKSDFKDNSIGLIITSPPYG 273
>gi|71892128|ref|YP_277860.1| N5-glutamine methyltransferase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71796234|gb|AAZ40985.1| N5-glutamine methyltransferase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 278
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%)
Query: 3 QKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPY------NLQLNG 55
QK +L + + +K+ K I G+ + L K +LI ++PPY LQ
Sbjct: 142 QKKALFLAHKNKLLLNFKNVKFIYGD---WFKYLRNKKFNLIVSNPPYIDKNDSCLQFRD 198
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
++ P ++LV D + L+ NG L + ++ +
Sbjct: 199 MIFEPKNALVSKQKGLED-----------LTVICKYSTQHLRQNGWLVLEHGWNQGNYMR 247
Query: 116 TMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
+ F ++ + + G+ +
Sbjct: 248 ALFFKFGFTHIHT-IRDYHHYERVTYGKWKSH 278
>gi|332667237|ref|YP_004450025.1| peptidase S10 serine carboxypeptidase [Haliscomenobacter hydrossis
DSM 1100]
gi|332336051|gb|AEE53152.1| peptidase S10 serine carboxypeptidase [Haliscomenobacter hydrossis
DSM 1100]
Length = 503
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 41 DLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKP 98
DL+F DP + V D W + F R W+ +R L P
Sbjct: 145 DLVFIDP---VGTGYSRVVGKGK----VEDFWGLNEDAASIAKFMRLWITENKRWLSP 195
>gi|324016950|gb|EGB86169.1| N-6 DNA Methylase [Escherichia coli MS 117-3]
Length = 715
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 11/136 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD----------AVTDS 71
+I ++ L S DLI +PP+ + +S + +
Sbjct: 432 QIFYTDNSLTTNALKPNSFDLICTNPPFGTPKFDKGKNGQNSKANYEANMEQVLGGFRPT 491
Query: 72 WDKFSSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
S+ A YD W L NG G ++ R G + + +
Sbjct: 492 KKVVDSYNAWYDHVKMKWEDIGDLELDENGEPKWAGYRTDLRRTGGTDKKPFYSLQPTTA 551
Query: 131 WRKSNPMPNFRGRRFQ 146
P+ +G
Sbjct: 552 GLALGSKPDSKGNWQP 567
>gi|325680864|ref|ZP_08160402.1| DNA adenine methylase [Ruminococcus albus 8]
gi|324107644|gb|EGC01922.1| DNA adenine methylase [Ruminococcus albus 8]
Length = 626
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 1 MSQKNSLAINENQNSIFEWK--DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
+SQ+ A+ N++F+ +K + G+++ L + DL++ DPPY L+ Y
Sbjct: 456 LSQQFLEAVEAVNNAVFDNHKANKSVNGDAM----ALDVEKPDLVYIDPPYYSPLSDNEY 511
Query: 59 RPDHSLVDAVTDSWD 73
+ ++ + W
Sbjct: 512 VRRYHFIEGLARDWK 526
>gi|290343563|ref|YP_003494930.1| hypothetical protein OTV1_091 [Ostreococcus tauri virus 1]
gi|260160978|emb|CAY39679.1| hypothetical protein OTV1_091 [Ostreococcus tauri virus 1]
Length = 341
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYN---LQLNG---QLYRPDH-----SLVDAVTDSWDKF 75
++ L LP VDLI+ DPPYN N L + S V + W+K
Sbjct: 201 DACDFLRDLP--QVDLIYLDPPYNQHPYGSNYFMLNLICTNERPHTVSKVSGIPGDWNKS 258
Query: 76 S 76
Sbjct: 259 Q 259
>gi|195081752|ref|XP_001997355.1| GH11743 [Drosophila grimshawi]
gi|193905442|gb|EDW04309.1| GH11743 [Drosophila grimshawi]
Length = 486
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK---RIASVQPLGNI 274
+ + GD++ DPF G+G+ A K +G ++ I A RI+ +
Sbjct: 209 QAMVRDGDLVFDPFVGTGSLLVSAAKFGGYVLGADIDFMMIH-ARCRPSRISQKVRDKDE 267
Query: 275 ELTVL 279
+
Sbjct: 268 SIRAN 272
>gi|326520792|dbj|BAJ92759.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 260
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVA-KKLRRSFIGIEMKQDYIDIATKRIASVQ 269
L I + K GD +LD G G+ A K+ + G+ + + A R
Sbjct: 84 KLSLLINKAKIKRGDHVLDIGSGWGSLAIQAVKQTGCKYTGVTLSAEQHKYAE-RKVREA 142
Query: 270 PLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNA 308
L + +L R P ++ ++ G+I+ G +A
Sbjct: 143 GLEDHITFLLCDYRQIPPCKYDAIISCGMIEHVGHEYMDA 182
>gi|307312925|ref|ZP_07592553.1| N-6 DNA methylase [Escherichia coli W]
gi|306907093|gb|EFN37600.1| N-6 DNA methylase [Escherichia coli W]
gi|315063606|gb|ADT77933.1| putative type I restriction-modification system methyltransferase
subunit [Escherichia coli W]
gi|320200586|gb|EFW75172.1| N-6 DNA methylase [Escherichia coli EC4100B]
gi|323380313|gb|ADX52581.1| N-6 DNA methylase [Escherichia coli KO11]
Length = 715
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 11/136 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD----------AVTDS 71
+I ++ L S DLI +PP+ + +S + +
Sbjct: 432 QIFYTDNSLTTNALKPNSFDLICTNPPFGTPKFDKGKNGQNSKANYEANMEQVLGGFRPT 491
Query: 72 WDKFSSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
S+ A YD W L NG G ++ R G + + +
Sbjct: 492 KKVVDSYNAWYDHVKMKWEDIGDLELDENGEPKWAGYRTDLRRTGGTDKKPFYSLQPTTA 551
Query: 131 WRKSNPMPNFRGRRFQ 146
P+ +G
Sbjct: 552 GLALGSKPDSKGNWQP 567
>gi|218550410|ref|YP_002384201.1| type I restriction-modification system methyltransferase subunit
[Escherichia fergusonii ATCC 35469]
gi|218357951|emb|CAQ90595.1| putative type I restriction-modification system methyltransferase
subunit [Escherichia fergusonii ATCC 35469]
Length = 715
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 11/136 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD----------AVTDS 71
+I ++ L S DLI +PP+ + +S + +
Sbjct: 432 QIFYTDNSLTTNALKPNSFDLICTNPPFGTPKFDKGKNGQNSKANYEANMEQVLGGFRPT 491
Query: 72 WDKFSSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
S+ A YD W L NG G ++ R G + + +
Sbjct: 492 KKVVDSYNAWYDHVKMKWEDIGDLELDENGEPKWAGYRTDLRRTGGTDKKPFYSLQPTTA 551
Query: 131 WRKSNPMPNFRGRRFQ 146
P+ +G
Sbjct: 552 GLALGSKPDSKGNWQP 567
>gi|124513594|ref|XP_001350153.1| tRNA guanosine-2'-O-methyltransferase, putative [Plasmodium
falciparum 3D7]
gi|23615570|emb|CAD52562.1| tRNA guanosine-2'-O-methyltransferase, putative [Plasmodium
falciparum 3D7]
Length = 517
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 36/253 (14%), Positives = 75/253 (29%), Gaps = 22/253 (8%)
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN-- 122
+ V + W + +S+ + LK + SY I + +N
Sbjct: 117 IKGVIELWSEGNSYNEILKELLLKKDLFEKTLKDKKWCFCFNSYGKIINQEEKVDKMNFF 176
Query: 123 ------FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANE 176
+ ++ + + + + ++H A + +
Sbjct: 177 KILLEPYTNIDLMNPQVQIGLIEEYEQESNHSHILKRVYFGKCIALRRNQYMNNINKLKN 236
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEAL-LSRILVSSTKPGDIILDPFFGSG 235
D ++ I + + L PT L ++ K GDI+LDPF GSG
Sbjct: 237 DHKIIGKPKIAWWTSYALNKRP---ILGPTTTDNDLAFIMCNIAKIKKGDIVLDPFVGSG 293
Query: 236 TSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
+ IG ++ I ++ L ++ + F +
Sbjct: 294 GLLITSSIFGAICIGNDID----------IRLLKGYKLSYLNPHMKHKSNNKSIFENFLY 343
Query: 296 RGLIQPGQILTNA 308
L P I+++
Sbjct: 344 YNLNIPEIIVSDN 356
>gi|320008548|gb|ADW03398.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces flavogriseus ATCC 33331]
Length = 281
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ +G+++S L +L VDL+ ++PPY
Sbjct: 161 TVHRGDALSALPEL-DGQVDLVISNPPY 187
>gi|182435968|ref|YP_001823687.1| putative methyltransferase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326776592|ref|ZP_08235857.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces cf. griseus XylebKG-1]
gi|178464484|dbj|BAG19004.1| putative methyltransferase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326656925|gb|EGE41771.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces cf. griseus XylebKG-1]
Length = 281
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ +G+++S L +L VDL+ ++PPY
Sbjct: 161 TVHRGDALSALPEL-DGQVDLVISNPPY 187
>gi|150016043|ref|YP_001308297.1| methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149902508|gb|ABR33341.1| putative methyltransferase [Clostridium beijerinckii NCIMB 8052]
Length = 185
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 27 NSISVLEKLPAK--SVDLIFADPPYN---------LQLNGQLYRPDHSLVDAVTDSWDKF 75
++ L+ L K D+IF DPPY + + ++ + D +V + + +
Sbjct: 99 DAYEGLKNLAKKGKKFDIIFIDPPYCKEMIPEAMKIVKDNEILKNDGIIVTKIDTIEEIY 158
Query: 76 SSFEA 80
++
Sbjct: 159 EGYKD 163
>gi|332159394|ref|YP_004424673.1| putative RNA methyltransferase [Pyrococcus sp. NA2]
gi|331034857|gb|AEC52669.1| putative RNA methyltransferase [Pyrococcus sp. NA2]
Length = 408
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 171 LKAANEDVQMRSDWLIPICSGSERLRNKDGEK---LHPTQKPEALLSRILVSSTK----- 222
+ N + S + G E + + + +HP + + + K
Sbjct: 211 YWSINRTMSDVSYGDVEKWWGKEFITERIDDVKYLIHPNSFFQTNSYQAINLVRKVSEFV 270
Query: 223 PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
G+ ILD + G GT G K +G + + I++A + +
Sbjct: 271 EGEKILDMYSGVGTFGIYLAKRGMKVVGFDSNEFAIEMARRNVE 314
>gi|260772847|ref|ZP_05881763.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio
metschnikovii CIP 69.14]
gi|260611986|gb|EEX37189.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio
metschnikovii CIP 69.14]
Length = 624
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 22/125 (17%)
Query: 25 KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAF 84
+ + + L+ DLIF DPP R + S F +
Sbjct: 510 QADCLKWLDN-ANGQYDLIFIDPP----TFSNSKRMEQS-----------FDVQRDHILL 553
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
+R+L+P GT+ + + LQ L +L + ++ PM R ++
Sbjct: 554 M----KNLKRILRPGGTVVFSNNKRHFKMDMDSLQELG--LLAQNISAQTLPMDFERNKQ 607
Query: 145 FQNAH 149
N
Sbjct: 608 IHNCW 612
>gi|254428061|ref|ZP_05041768.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
gi|196194230|gb|EDX89189.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
Length = 398
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 24 IKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRP 60
I+G++ + +++L A + DL+ DPP ++
Sbjct: 275 IQGDAFAAMKQLIADGEKYDLVVLDPPAFIKRKKDFKNG 313
>gi|218441684|ref|YP_002380013.1| hypothetical protein PCC7424_4787 [Cyanothece sp. PCC 7424]
gi|218174412|gb|ACK73145.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
Length = 441
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
+N L F + II G+S L++ +SVD + PPY
Sbjct: 240 RNDLQFISKTELNFSQLNSIILGDSTYNLQEEVHRSVDFVITSPPY 285
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 212 LLSRILVSST-KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
L+ ++ D ILDPF G GT+ +K GIE+
Sbjct: 64 LVRFLIEQLKVTQNDFILDPFSGRGTTIIECQKKGIKSQGIEINP 108
>gi|156308544|ref|XP_001617681.1| hypothetical protein NEMVEDRAFT_v1g225887 [Nematostella vectensis]
gi|156195235|gb|EDO25581.1| predicted protein [Nematostella vectensis]
Length = 336
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 28/108 (25%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAK-------SVDLIFADPPYNLQLNGQ 56
++ +N+ + SI + S+ + + D+IF +PP+
Sbjct: 108 EDPNELNKIKASIKQ---------SLERMADIDNNYTDDARGKFDMIFTNPPF------- 151
Query: 57 LYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
+ V + DK+ + DA ++ AC ++LKP G + +
Sbjct: 152 -----GAKVKVEKEIADKYDLSKYSDAPEVLFIEACYKLLKPGGKMAI 194
>gi|110835389|ref|YP_694248.1| hypothetical protein ABO_2528 [Alcanivorax borkumensis SK2]
gi|110648500|emb|CAL17976.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 401
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 24 IKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRP 60
I+G++ + +++L A + DL+ DPP ++
Sbjct: 278 IQGDAFAAMKQLIADGEKYDLVVLDPPAFIKRKKDFKNG 316
>gi|145219787|ref|YP_001130496.1| SAM-dependent methyltransferase [Prosthecochloris vibrioformis DSM
265]
gi|145205951|gb|ABP36994.1| SAM-dependent methyltransferase [Chlorobium phaeovibrioides DSM
265]
Length = 393
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 2 SQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPA--KSVDLIFADPPYNLQLNGQ 56
+ +++L E+ + + + +I ++ ++L+++ +S DL+ DPP +
Sbjct: 249 ASEDALKRAEHNAKLNGYDNFSLIADDAFNILQQMIDAKESFDLVILDPPSFTKSRKN 306
>gi|222475697|ref|YP_002564218.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
49239]
gi|222454068|gb|ACM58332.1| adenine-specific DNA methylase [Halorubrum lacusprofundi ATCC
49239]
Length = 892
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 24/66 (36%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PE+L ILDPF G GTS A + +G ++ + K + +
Sbjct: 114 PESLWELYPKDVRVEDKKILDPFMGGGTSLVEASRFGAEVVGNDLNPVAWFVTKKELEAG 173
Query: 269 QPLGNI 274
Q
Sbjct: 174 QTDVEE 179
>gi|62182921|ref|YP_219338.1| hypothetical protein SC4351 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62130554|gb|AAX68257.1| hypothetical protein SCH_4351 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322717423|gb|EFZ08994.1| DNA methylase N-4/N-6 [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 423
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ + S D ILDPF GSGT+ ++ + + IE+ D+ ++
Sbjct: 38 FSPKFVHDTIQKSLIKVDKILDPFGGSGTTALTSQLMGINPTTIEVNPFLADLIESKLTE 97
Query: 268 VQ 269
Sbjct: 98 YN 99
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
G+S SVL L DLI PPY +
Sbjct: 235 FFNGDSRSVLSSL-DCKQDLIVFSPPYPNSFDYTDIYN 271
>gi|305663012|ref|YP_003859300.1| methyltransferase-like protein [Ignisphaera aggregans DSM 17230]
gi|304377581|gb|ADM27420.1| methyltransferase-like protein [Ignisphaera aggregans DSM 17230]
Length = 290
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP-YNL 51
++N + + + +II GN+I V++ ++ D I DPP +N+
Sbjct: 178 SMNPWSRGLEDNRIRIILGNAIEVIKLFDEETFDAIVHDPPRFNI 222
>gi|224586319|ref|YP_002640118.1| hypothetical protein SPC_4628 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224470847|gb|ACN48677.1| hypothetical protein SPC_4628 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 423
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
+ + S D ILDPF GSGT+ ++ + + IE+ D+ ++
Sbjct: 38 FSPKFVHDTIQKSLIKVDKILDPFGGSGTTALTSQLMGINPTTIEVNPFLADLIESKLTE 97
Query: 268 VQ 269
Sbjct: 98 YN 99
Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
G+S SVL L DLI PPY +
Sbjct: 235 FFNGDSRSVLSSL-DCKQDLIVFSPPYPNSFDYTDIYN 271
>gi|157961769|ref|YP_001501803.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella pealeana ATCC
700345]
gi|229560178|sp|A8H3Y1|RLML_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|157846769|gb|ABV87268.1| putative RNA methylase [Shewanella pealeana ATCC 700345]
Length = 711
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 24/116 (20%)
Query: 12 NQNSIFEWKD----KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
+N + + ++ N + +++ DLIF DPP
Sbjct: 586 KENFALNGLNSDKYQFVQANCLQWMKRTHD-RFDLIFIDPP---------------TFSN 629
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
D F + A L P G + + L+
Sbjct: 630 SKRMEDSFDVERDHVAMLSDVFKL----LNPGGEIIFSNNKRKFKMEIAALEAQGM 681
>gi|312601565|gb|ADQ90820.1| DNA adenine methylase [Mycoplasma hyopneumoniae 168]
Length = 549
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 11 ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+N N+I + ++ I N + +L D +F DPPY+ + + D
Sbjct: 148 KNLNNISSFLNENSIEIYNKNYLEILSLAKEN--DFVFIDPPYDSENDNSFTNYDR---- 201
Query: 67 AVTDSWDKFSSFE 79
+ W K + E
Sbjct: 202 ---NGWKKQDTLE 211
>gi|212550327|ref|YP_002308645.1| DNA modification methylase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549362|dbj|BAG84029.1| DNA modification methylase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 406
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+P L+ ++ +ILDPF GSG S + G ++ + I+
Sbjct: 28 YPAMLHPLLVDYLIDQYANKNSVILDPFSGSGVSLLQSGLKGYPSYGFDINPFALLIS 85
>gi|114048624|ref|YP_739174.1| peptidase S10, serine carboxypeptidase [Shewanella sp. MR-7]
gi|113890066|gb|ABI44117.1| peptidase S10, serine carboxypeptidase [Shewanella sp. MR-7]
Length = 516
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
L +S DL+F DP + R A D W ++ F R WL+ +
Sbjct: 150 SLLDES-DLVFIDP-----VGTGFSRALGEKKGA--DFWGVKEDAQSIAEFMRRWLIEHK 201
Query: 94 RVLKP 98
R P
Sbjct: 202 RWNSP 206
>gi|304310432|ref|YP_003810030.1| hypothetical protein HDN1F_07880 [gamma proteobacterium HdN1]
gi|301796165|emb|CBL44371.1| conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 267
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
++I G+S + LP S D I DPP
Sbjct: 171 QLINGDSSQEIHSLPDASFDAILHDPP 197
>gi|16801225|ref|NP_471493.1| hypothetical protein lin2159 [Listeria innocua Clip11262]
gi|16414673|emb|CAC97389.1| lin2159 [Listeria innocua Clip11262]
gi|313617949|gb|EFR90118.1| RNA methyltransferase, RsmD family [Listeria innocua FSL S4-378]
Length = 185
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
L+ G PT ++ GDI+LD F GSG G A + I+
Sbjct: 13 LKAVPGNNTRPTTDKVKESLFSIIGPFFDGDIVLDLFAGSGGLGIEALSRGAERAVFIDQ 72
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
I + I E+ +R + N
Sbjct: 73 ATLAIKTIRQNIEGCHFTERAEVYRNDAERALKLLHKNE 111
>gi|315283097|ref|ZP_07871363.1| RNA methyltransferase, RsmD family [Listeria marthii FSL S4-120]
gi|313613256|gb|EFR87134.1| RNA methyltransferase, RsmD family [Listeria marthii FSL S4-120]
Length = 189
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 5/115 (4%)
Query: 183 DWLIPICSGSER----LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG 238
ER L+ G PT ++ GDI+LD F GSG G
Sbjct: 1 MCKNMRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGPFFDGDIVLDLFAGSGGLG 60
Query: 239 AVAKKLR-RSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
A + I+ I + + E+ +R + N
Sbjct: 61 IEALSRGAERAVFIDQATLAIKTIRQNLEGCHFTERAEVYRNDAERALKLLHKNE 115
>gi|331269801|ref|YP_004396293.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
botulinum BKT015925]
gi|329126351|gb|AEB76296.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
botulinum BKT015925]
Length = 391
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 9/145 (6%)
Query: 222 KPGDIILDPFFGSGTSGA-VAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLT 280
GD +LD G G AK+ GI + ++ ++ A +RI +E+ ++
Sbjct: 163 NKGDTLLDIGCGWGELIIDAAKEYGVKATGITLSEEQVEKANQRIKENNLEDLVEIKLMD 222
Query: 281 GKR-TEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVS 339
+ + FN +V G+I+ + NI + L+ + +H + A++
Sbjct: 223 YRELIKEHKKFNRIVSVGMIE-----HVGRKNIPKFIEDVSKLLEDEGVSLLHCITAQIE 277
Query: 340 GSETCNGWNFWYFEKLGELHSINTL 364
G N W + G + SI L
Sbjct: 278 GEA--NEWIKRHVFPGGYIPSIREL 300
>gi|117921663|ref|YP_870855.1| peptidase S10, serine carboxypeptidase [Shewanella sp. ANA-3]
gi|117613995|gb|ABK49449.1| peptidase S10, serine carboxypeptidase [Shewanella sp. ANA-3]
Length = 516
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
L +S DL+F DP + R A D W ++ F R WL+ +
Sbjct: 150 SLLDES-DLVFIDP-----VGTGFSRALGEKKGA--DFWGVKEDAQSIAEFMRRWLIEHK 201
Query: 94 RVLKP 98
R P
Sbjct: 202 RWNSP 206
>gi|315180171|gb|ADT87085.1| predicted N6-adenine-specific DNA methylase [Vibrio furnissii NCTC
11218]
Length = 707
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++ + + LEK DLIF DPP R + S F
Sbjct: 595 HQYVQADCLQWLEK-ATGQYDLIFIDPP----TFSNSKRMEQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + ++ L + ++ P+
Sbjct: 639 HIQLMTN----LKRILRPEGTIVFSNNKRHFKMDMEQMEALGLE--AQNISSQTLPLDFE 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|72080950|ref|YP_288008.1| DNA adenine methylase [Mycoplasma hyopneumoniae 7448]
gi|71914074|gb|AAZ53985.1| DNA adenine methylase [Mycoplasma hyopneumoniae 7448]
Length = 549
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 11 ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+N N+I + ++ I N + +L D +F DPPY+ + + D
Sbjct: 148 KNLNNISSFLNENSIEIYNKNYLEILSLAKEN--DFVFIDPPYDSENDNSFTNYDR---- 201
Query: 67 AVTDSWDKFSSFE 79
+ W K + E
Sbjct: 202 ---NGWKKQDTLE 211
>gi|289422316|ref|ZP_06424166.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
653-L]
gi|289157261|gb|EFD05876.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
653-L]
Length = 186
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPPYNLQLNGQLYR 59
+ FE + +I G+ + + + + +D+IF DPPY L G++ +
Sbjct: 85 SKTKFEARSTVILGDYLKAISNISSKKEKMDIIFIDPPYYKGLFGEVLK 133
>gi|237813872|ref|YP_002898323.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
MSHR346]
gi|237503463|gb|ACQ95781.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
MSHR346]
Length = 302
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK GI++ +
Sbjct: 147 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 203
Query: 259 DIATKRIASVQPLGNIELTVL 279
+ A + L
Sbjct: 204 EAARHNSERNRADVTYSLPDD 224
>gi|229086494|ref|ZP_04218666.1| Methyltransferase [Bacillus cereus Rock3-44]
gi|228696811|gb|EEL49624.1| Methyltransferase [Bacillus cereus Rock3-44]
Length = 188
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 1/106 (0%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEM 253
L+ G PT ++ G I LD F GSG G A I ++
Sbjct: 13 LKAVPGNTTRPTTDKVKESIFNMIGPYFEGGIALDLFGGSGGLGIEALSRGIDKAIFVDR 72
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
+ + + + S + E+ +R + L ++
Sbjct: 73 DNKAVKVIHQNLESCRIQDQAEVYRNDAERAVKALIKRELSFDLIL 118
>gi|15789334|ref|NP_277101.1| modification methylase, putative [Deinococcus radiodurans R1]
Length = 434
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 22 KIIKGNSISVLEK-LPAKSVDLIFADPPY 49
++ +G S + LP SVDL+ PPY
Sbjct: 234 QVYQG---SFMRSELPDSSVDLMVTSPPY 259
>gi|325294970|ref|YP_004281484.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065418|gb|ADY73425.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 193
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 23 IIKGNSISVLEKLPA--KSVDLIFADPPY 49
II + ++ L+KL + D I+ADPPY
Sbjct: 100 IICDDYVNALKKLAKRGEKFDFIYADPPY 128
>gi|323139913|ref|ZP_08074937.1| ParB domain protein nuclease [Methylocystis sp. ATCC 49242]
gi|322394830|gb|EFX97407.1| ParB domain protein nuclease [Methylocystis sp. ATCC 49242]
Length = 273
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 20 KDKIIKGNSIS--VLEKLPAKS-VDLIFADPPYNLQLNG 55
K ++I G++ V E+ A S L DPPYN+++NG
Sbjct: 216 KHRLICGDARDPKVYERAMAGSLAQLAVCDPPYNVKING 254
>gi|229492100|ref|ZP_04385910.1| putative modification methylase [Rhodococcus erythropolis SK121]
gi|229320997|gb|EEN86808.1| putative modification methylase [Rhodococcus erythropolis SK121]
Length = 440
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 199 DGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
G P + + L + ILDPF GSGT+ A L S +E+
Sbjct: 34 HGLHRFPAKYIPQVPRWALDAYATAESRILDPFAGSGTTNVEAASLGYSSAALEINPLSR 93
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVE 295
I R S + + R+ LLV
Sbjct: 94 LIT--RAKSTPLPSDHLSMIAKQIRSAWNPHKGLLVA 128
>gi|90578614|ref|ZP_01234424.1| hypothetical N6-adenine-specific DNA methylase [Vibrio angustum
S14]
gi|90439447|gb|EAS64628.1| hypothetical N6-adenine-specific DNA methylase [Vibrio angustum
S14]
Length = 712
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N+ + + ++ + + L+++ + DLIF DPP R +
Sbjct: 592 NNQVGPQHEYVQADCLQWLQEV-DDTFDLIFIDPP----TFSNSKRMKQT---------- 636
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F + +R+L+P+G ++ S + + + + + K
Sbjct: 637 -FDIQRDHIMLM----ENLKRMLRPDG--QIVFSNNKRQFKMDLDKINELGLQAKNISNK 689
Query: 134 SNPMPNFRGRRFQNAH 149
+ P+ + ++ N
Sbjct: 690 TLPLDFAKNKQIHNCW 705
>gi|257090549|ref|ZP_05584910.1| predicted protein [Enterococcus faecalis CH188]
gi|256999361|gb|EEU85881.1| predicted protein [Enterococcus faecalis CH188]
gi|315578700|gb|EFU90891.1| hypothetical protein HMPREF9511_01122 [Enterococcus faecalis
TX0630]
gi|327535676|gb|AEA94510.1| methyltransferase [Enterococcus faecalis OG1RF]
Length = 424
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPG---DIILDPFFG 233
+ E+ +K +P + P + + L + + + D F G
Sbjct: 13 KNFDYIKTDEYWNFGEKDEDKMHRIHTYPAKFPSFITIKALEYAREKKVNVATVGDIFCG 72
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
GT K F G ++ IA + ++P
Sbjct: 73 CGTVAYEVAKQGYDFWGCDVNPVASLIARVKSKRLEPRK 111
>gi|260583113|ref|ZP_05850894.1| conserved hypothetical protein [Haemophilus influenzae NT127]
gi|260093825|gb|EEW77732.1| conserved hypothetical protein [Haemophilus influenzae NT127]
Length = 452
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
L + + G ILDPF G G VA KL R++IG++++ + I+
Sbjct: 225 LCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEA 273
>gi|217967096|ref|YP_002352602.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
gi|217336195|gb|ACK41988.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
Length = 448
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 26/186 (13%)
Query: 152 LIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI---CSGSERLRNKDGEKLH---- 204
+ A + Y N + + ++ G E +R+K GE +
Sbjct: 217 IDNAKKIARFYRYRLKNLKSFYININPKRTNEIFGEESRLIWGEEVIRDKIGEFIFEISP 276
Query: 205 ------PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
+ + E L ++ L + ++ D + G GT K GIE+++ I
Sbjct: 277 VSFFQINSIQTEKLYNKALEYLSPNSKLVFDAYCGIGTISLFLSKKAEKVYGIEVERSAI 336
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN------I 312
+ A K A + + N+E + PR L+E G I P I+ + +
Sbjct: 337 EDAWKN-ARINKVKNVEFIWGRSEEVIPR-----LIEDGKI-PDAIVLDPPRKGCDQNLL 389
Query: 313 SATVCA 318
A + A
Sbjct: 390 EAIIRA 395
>gi|254429734|ref|ZP_05043441.1| Putative RNA methylase family UPF0020 [Alcanivorax sp. DG881]
gi|196195903|gb|EDX90862.1| Putative RNA methylase family UPF0020 [Alcanivorax sp. DG881]
Length = 704
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 29 ISVLEKLPA--KSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ + L + DL+F DPP + R D + + D
Sbjct: 598 MDAMRWLDECKEQFDLVFCDPP---TFSNNKSRSDFVVEEHHGDL--------------- 639
Query: 87 AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
+ R L+P G L+ +Y ++ + + ++ + +
Sbjct: 640 --IRKIMRCLEPGGVLYFSCNYRRFQMDESISKWFDVEDISRWSIPEDFRRNEKIHYCYA 697
Query: 147 NAHET 151
H
Sbjct: 698 IRHVE 702
>gi|148827547|ref|YP_001292300.1| hypothetical protein CGSHiGG_04860 [Haemophilus influenzae PittGG]
gi|319775724|ref|YP_004138212.1| hypothetical protein HICON_10670 [Haemophilus influenzae F3047]
gi|319896738|ref|YP_004134931.1| hypothetical protein HIBPF03950 [Haemophilus influenzae F3031]
gi|148718789|gb|ABQ99916.1| hypothetical protein CGSHiGG_04860 [Haemophilus influenzae PittGG]
gi|317432240|emb|CBY80592.1| conserved hypothetical protein [Haemophilus influenzae F3031]
gi|317450315|emb|CBY86531.1| conserved hypothetical protein [Haemophilus influenzae F3047]
Length = 451
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
L + + G ILDPF G G VA KL R++IG++++ + I+
Sbjct: 224 LCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEA 272
>gi|76812155|ref|YP_334873.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1710b]
gi|126439278|ref|YP_001060478.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
668]
gi|254258318|ref|ZP_04949372.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1710a]
gi|254299321|ref|ZP_04966771.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
406e]
gi|123597942|sp|Q3JNI0|PRMA_BURP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|166223401|sp|A3NDQ7|PRMA_BURP6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|76581608|gb|ABA51083.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1710b]
gi|126218771|gb|ABN82277.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
668]
gi|157809259|gb|EDO86429.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
406e]
gi|254217007|gb|EET06391.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1710a]
Length = 300
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK GI++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 201
Query: 259 DIATKR 264
+ A
Sbjct: 202 EAARHN 207
>gi|53726117|ref|YP_104049.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
23344]
gi|121601286|ref|YP_991774.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1]
gi|124385858|ref|YP_001027267.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
10229]
gi|126450877|ref|YP_001082797.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
10247]
gi|166998585|ref|ZP_02264443.1| ribosomal protein L11 methyltransferase [Burkholderia mallei
PRL-20]
gi|238561259|ref|ZP_00442332.2| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8
horse 4]
gi|254178904|ref|ZP_04885558.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
10399]
gi|254202768|ref|ZP_04909131.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH]
gi|254208110|ref|ZP_04914460.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU]
gi|60390319|sp|Q62GX2|PRMA_BURMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|166223398|sp|A3MRB1|PRMA_BURM7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|166223399|sp|A2S5P8|PRMA_BURM9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|166223400|sp|A1V0M1|PRMA_BURMS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|52429540|gb|AAU50133.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
23344]
gi|121230096|gb|ABM52614.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1]
gi|124293878|gb|ABN03147.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
10229]
gi|126243747|gb|ABO06840.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
10247]
gi|147747015|gb|EDK54092.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH]
gi|147752004|gb|EDK59071.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU]
gi|160694818|gb|EDP84826.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
10399]
gi|238524959|gb|EEP88389.1| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8
horse 4]
gi|243065269|gb|EES47455.1| ribosomal protein L11 methyltransferase [Burkholderia mallei
PRL-20]
Length = 300
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK GI++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 201
Query: 259 DIATKR 264
+ A
Sbjct: 202 EAARHN 207
>gi|53720593|ref|YP_109579.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
K96243]
gi|167740256|ref|ZP_02413030.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
14]
gi|167817474|ref|ZP_02449154.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
91]
gi|167847363|ref|ZP_02472871.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
B7210]
gi|60390329|sp|Q63QN9|PRMA_BURPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|52211007|emb|CAH36995.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
K96243]
Length = 300
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK GI++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 201
Query: 259 DIATKR 264
+ A
Sbjct: 202 EAARHN 207
>gi|134280036|ref|ZP_01766747.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
305]
gi|134248043|gb|EBA48126.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
305]
Length = 302
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK GI++ +
Sbjct: 147 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAV 203
Query: 259 DIATKR 264
+ A
Sbjct: 204 EAARHN 209
>gi|113969233|ref|YP_733026.1| peptidase S10, serine carboxypeptidase [Shewanella sp. MR-4]
gi|113883917|gb|ABI37969.1| peptidase S10, serine carboxypeptidase [Shewanella sp. MR-4]
Length = 516
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
L +S DL+F DP + R A D W ++ F R WL+ +
Sbjct: 150 SLLDES-DLVFIDP-----VGTGFSRALGEKKGA--DFWGVKEDAQSIAEFMRRWLIEHK 201
Query: 94 RVLKP 98
R P
Sbjct: 202 RWNSP 206
>gi|303257419|ref|ZP_07343432.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
gi|331000630|ref|ZP_08324285.1| hypothetical protein HMPREF9439_01933 [Parasutterella
excrementihominis YIT 11859]
gi|302859776|gb|EFL82854.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
gi|329570902|gb|EGG52610.1| hypothetical protein HMPREF9439_01933 [Parasutterella
excrementihominis YIT 11859]
Length = 561
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KPG LDP GSGT +A+++ G++ + IA +
Sbjct: 155 KPGASFLDPCCGSGTFLILAQEMGLKICGMDSDPIAVMIAKANL 198
>gi|295096315|emb|CBK85405.1| 23S rRNA m(2)G-2445 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 708
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + + L + DLIF DPP D F
Sbjct: 597 HRLLQADVLGWLRD-TDEQFDLIFIDPP---------------TFSNSKRMEDSFDVQRD 640
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + L L + + +K+
Sbjct: 641 HLRLMTD----LKRLLRKGGTIMFSNNKRGFRMDHDGLAELG--LKAQEISQKTLSQDFA 694
Query: 141 RGRRFQNAH 149
R R+ N
Sbjct: 695 RNRQIHNCW 703
>gi|315231617|ref|YP_004072053.1| hypothetical protein TERMP_01855 [Thermococcus barophilus MP]
gi|315184645|gb|ADT84830.1| hypothetical protein TERMP_01855 [Thermococcus barophilus MP]
Length = 1057
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
K+I+G++ S+ LP + D+I DPPY++
Sbjct: 589 KVIQGDATSL--NLP-EKFDVIVTDPPYSI 615
>gi|312903696|ref|ZP_07762870.1| hypothetical protein HMPREF9512_01453 [Enterococcus faecalis
TX0635]
gi|310632888|gb|EFQ16171.1| hypothetical protein HMPREF9512_01453 [Enterococcus faecalis
TX0635]
Length = 420
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Query: 178 VQMRSDWLIPICSGSERLRNKDGEK-LHPTQKPEALLSRILVSSTKPG---DIILDPFFG 233
+ E+ +K +P + P + + L + + + D F G
Sbjct: 9 KNFDYIKTDEYWNFGEKDEDKMHRIHTYPAKFPSFITIKALEYAREKKVNVATVGDIFCG 68
Query: 234 SGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
GT K F G ++ IA + ++P
Sbjct: 69 CGTVAYEVAKQGYDFWGCDVNPVASLIARVKSKRLEPRK 107
>gi|240102214|ref|YP_002958522.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Thermococcus gammatolerans EJ3]
gi|239909767|gb|ACS32658.1| Site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Thermococcus gammatolerans EJ3]
Length = 465
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
I +S + + + S+D IF PPY +
Sbjct: 261 IYNFDSRFLAKIINENSIDFIFTSPPYLNNYDY 293
>gi|167624277|ref|YP_001674571.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella halifaxensis
HAW-EB4]
gi|229560176|sp|B0TIX7|RLML_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|167354299|gb|ABZ76912.1| putative RNA methylase [Shewanella halifaxensis HAW-EB4]
Length = 711
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 24/116 (20%)
Query: 12 NQNSIFEWKD----KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
+N + + ++ N + +++ DLIF DPP
Sbjct: 586 KENFALNGLNSDKYQFVQANCLQWMKRTHD-RFDLIFIDPP---------------TFSN 629
Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
D F + A L P G + + L+ L
Sbjct: 630 SKRMEDSFDVQRDHLAMLTDVFKL----LNPGGEIIFSNNKRKFKMEIAELEALGM 681
>gi|54020632|ref|YP_116149.1| DNA adenine methylase [Mycoplasma hyopneumoniae 232]
gi|53987805|gb|AAV28006.1| putative methylase [Mycoplasma hyopneumoniae 232]
Length = 549
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 11 ENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD 66
+N N+I + ++ I N + +L D +F DPPY+ + + D
Sbjct: 148 KNLNNISSFLNENSIEIYNKNYLEILSLAKEN--DFVFIDPPYDSENDNSFTNYDR---- 201
Query: 67 AVTDSWDKFSSFE 79
+ W K + E
Sbjct: 202 ---NGWKKQDTLE 211
>gi|148263503|ref|YP_001230209.1| SAM-dependent methyltransferase-like protein [Geobacter
uraniireducens Rf4]
gi|146397003|gb|ABQ25636.1| SAM-dependent methyltransferase [Geobacter uraniireducens Rf4]
Length = 401
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPA-KSV-DLIFADPP 48
N + + + I G+ ++V+++L V D+I DPP
Sbjct: 270 NRLNPKRHEFIVGDCLNVMQELARQGKVYDIIIMDPP 306
>gi|302802849|ref|XP_002983178.1| hypothetical protein SELMODRAFT_117965 [Selaginella moellendorffii]
gi|300148863|gb|EFJ15520.1| hypothetical protein SELMODRAFT_117965 [Selaginella moellendorffii]
Length = 188
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT K L + L S + GD ILD GSG A K+ +G+++ +
Sbjct: 39 GTGEHPTTK---LCLKWLHKSVRSGDNILDYGTGSGILAIAALKMGASHAVGVDIDPMAV 95
Query: 259 --DIATKRIASVQPLGNIELTVLTGKRTEPRVA----FNLLVERGLIQPGQIL 305
+ + ++ P + +P F+++V L+ P L
Sbjct: 96 SSSASNATLNALDPHAFEVFIAAADDKDDPVPHGPGVFDVVVANILLNPLLTL 148
>gi|302812046|ref|XP_002987711.1| hypothetical protein SELMODRAFT_126447 [Selaginella moellendorffii]
gi|300144603|gb|EFJ11286.1| hypothetical protein SELMODRAFT_126447 [Selaginella moellendorffii]
Length = 188
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT K L + L S + GD ILD GSG A K+ +G+++ +
Sbjct: 39 GTGEHPTTK---LCLKWLHKSVRSGDNILDYGTGSGILAIAALKMGASHAVGVDIDPMAV 95
Query: 259 --DIATKRIASVQPLGNIELTVLTGKRTEPRVA----FNLLVERGLIQPGQIL 305
+ + ++ P + +P F+++V L+ P L
Sbjct: 96 SSSASNATLNALDPHAFEVFIAAADDKDDPVPHGPGVFDVVVANILLNPLLTL 148
>gi|225620631|ref|YP_002721889.1| PspGI methylase [Brachyspira hyodysenteriae WA1]
gi|225215451|gb|ACN84185.1| PspGI methylase [Brachyspira hyodysenteriae WA1]
Length = 480
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
KI N I + +P SVDL+ PPY
Sbjct: 284 KIFNNNVIDLF-DIPDSSVDLVVTSPPYG 311
>gi|197286958|ref|YP_002152830.1| restriction endonuclease [Proteus mirabilis HI4320]
gi|194684445|emb|CAR46177.1| putative restriction endonuclease [Proteus mirabilis HI4320]
Length = 781
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 1 MSQKNSLAINENQNSIFEWKDKII-------------KGNSISVLEKLPAKSVDLIFADP 47
+ + N L I E Q + I + L K+ +++DL+ DP
Sbjct: 286 LRETNILNIFEKQ--FKNRINTIYGYSLNNFSKIKFGNSDYREFLSKIKPETIDLVITDP 343
Query: 48 P 48
P
Sbjct: 344 P 344
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 196 RNKDGEKLHPTQ--KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
+ ++L P Q K ++ T+ D + DPF GSG+ A + R+ E
Sbjct: 30 KPPHADQLFPFQGRKAINHAKSVIDILTEAEDTVCDPFSGSGSFAYAASLMNRNVYANEY 89
Query: 254 KQDYIDI 260
+ +
Sbjct: 90 EPYTYKM 96
>gi|149377315|ref|ZP_01895061.1| methyltransferase small [Marinobacter algicola DG893]
gi|149358412|gb|EDM46888.1| methyltransferase small [Marinobacter algicola DG893]
Length = 398
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKL--PAKSVDLIFADPP 48
+S+ N N + + I+G++ L+ L + D++ DPP
Sbjct: 257 DSVHHNAKINGLDNIE--TIEGDAFDALKALCDEKEKFDIVVLDPP 300
>gi|47209908|emb|CAG12706.1| unnamed protein product [Tetraodon nigroviridis]
Length = 505
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 27 NSISVLEKLPAKSVDLIFADP 47
+++ ++KL DL+ DP
Sbjct: 114 DNLKFMKKLRDAKFDLMLTDP 134
>gi|332711374|ref|ZP_08431306.1| RNA methyltransferase, RsmD family [Lyngbya majuscula 3L]
gi|332349923|gb|EGJ29531.1| RNA methyltransferase, RsmD family [Lyngbya majuscula 3L]
Length = 179
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
++++G+ + L+ L + D I+ DPPY
Sbjct: 91 RVLQGDVVRRLKTLAPQQFDHIYFDPPY 118
>gi|119509479|ref|ZP_01628627.1| hypothetical protein N9414_17393 [Nodularia spumigena CCY9414]
gi|119465885|gb|EAW46774.1| hypothetical protein N9414_17393 [Nodularia spumigena CCY9414]
Length = 182
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
++++G+ + L+KL K D I+ DPPY L
Sbjct: 93 QLLRGDVMQQLKKLSGKQFDKIYFDPPYASGL 124
>gi|152997751|ref|YP_001342586.1| hypothetical protein Mmwyl1_3750 [Marinomonas sp. MWYL1]
gi|150838675|gb|ABR72651.1| conserved hypothetical protein 95 [Marinomonas sp. MWYL1]
Length = 398
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPD 61
+ +L +N+ + ++ G++ ++ L D++ DPP + + +
Sbjct: 258 EENLKLNQFEGGSN-----LMHGDAFDAMQSLIEDKERFDVVIMDPPAFIARRKDIKAGE 312
Query: 62 H 62
Sbjct: 313 G 313
>gi|331004263|ref|ZP_08327741.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
str. F0167]
gi|330411428|gb|EGG90840.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
str. F0167]
Length = 184
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 28 SISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
++ L+ L K D++F DPPY Q + D + A+ D +
Sbjct: 103 NLEKLKSL-GKKFDIVFIDPPY--QKGFEDKCLDILINSALIDEY 144
>gi|157692175|ref|YP_001486637.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
pumilus SAFR-032]
gi|157680933|gb|ABV62077.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
pumilus SAFR-032]
Length = 185
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGI-EMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
G LD F GSG G A + I + ++ E+ K
Sbjct: 42 GGWALDLFAGSGGLGIEALSRGFDHCIFVDRDMKAIQTIKGNLNQLELSDQSEVFRNEAK 101
Query: 283 RT 284
R
Sbjct: 102 RA 103
>gi|288803258|ref|ZP_06408692.1| methyltransferase [Prevotella melaninogenica D18]
gi|288334299|gb|EFC72740.1| methyltransferase [Prevotella melaninogenica D18]
Length = 176
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
+ +IKG+ L+ + DLIFADPPY L
Sbjct: 93 EHILIKGDVFRFLKSC-HQKFDLIFADPPYAL 123
>gi|145629815|ref|ZP_01785609.1| hypothetical protein CGSHi22121_00882 [Haemophilus influenzae
22.1-21]
gi|144977961|gb|EDJ87749.1| hypothetical protein CGSHi22121_00882 [Haemophilus influenzae
22.1-21]
Length = 376
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDI 260
L + + G ILDPF G G VA KL R++IG++++ + I+
Sbjct: 225 LCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEA 273
>gi|157103468|ref|XP_001647995.1| hypothetical protein AaeL_AAEL003922 [Aedes aegypti]
gi|108880526|gb|EAT44751.1| conserved hypothetical protein [Aedes aegypti]
Length = 493
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
K GD++ DPF GSG+ A K +G ++ +
Sbjct: 215 KKGDVVYDPFVGSGSLLVAAAKFGAYVLGTDIDYMTVH 252
>gi|84488835|ref|YP_447067.1| tRNA(1-methyladenosine) methyltransferase [Methanosphaera
stadtmanae DSM 3091]
gi|84372154|gb|ABC56424.1| predicted tRNA(1-methyladenosine) methyltransferase [Methanosphaera
stadtmanae DSM 3091]
Length = 244
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 3 QKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPP 48
+++ + I + S ++K+ + + ++ S+DL+F D P
Sbjct: 119 REDFVKIIKENISGTDFKNITLYNQDVTEGFKE-EDNSIDLVFLDLP 164
>gi|320546290|ref|ZP_08040610.1| methyltransferase [Streptococcus equinus ATCC 9812]
gi|320449067|gb|EFW89790.1| methyltransferase [Streptococcus equinus ATCC 9812]
Length = 182
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-F 248
G L+ DG+ PT ++ G +LD F GSG+ A
Sbjct: 11 FGGRPLKTLDGKITRPTTDKVKGAIFSMIGPFFDGGRVLDLFSGSGSLAIEAVSRGMDEA 70
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ +E + I T+ I + L + +
Sbjct: 71 VMVERNRQAQAIITENIKMTKSEKQFHLMKMDANKA 106
>gi|282860339|ref|ZP_06269407.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
gi|282586837|gb|EFB92074.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
Length = 811
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ I +G+S+S +KLP + +LI +PP+
Sbjct: 396 NNIYQGDSLSN-KKLPNDTFNLILTNPPF 423
>gi|289192336|ref|YP_003458277.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
gi|288938786|gb|ADC69541.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
Length = 279
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
IN +F+ KII G++ V+++ + D++ DPP
Sbjct: 164 KINPYSEELFKGNIKIILGDAFDVIKRFKDEEFDVVIHDPP 204
>gi|294650712|ref|ZP_06728064.1| methylase [Acinetobacter haemolyticus ATCC 19194]
gi|292823396|gb|EFF82247.1| methylase [Acinetobacter haemolyticus ATCC 19194]
Length = 735
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 20/150 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + L++ + DLIF DPP +
Sbjct: 605 SKENFVLNGLTVDHADEQHMFFASDCFEWLKE-GHEQYDLIFIDPP---------TFSNS 654
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S + L +GTL+ +Y + +
Sbjct: 655 KKFYGTFDVQRDHVSL----------IKRAMNRLTSDGTLYFSNNYRGFELDEEIEAMYD 704
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ + + R ++ H ++
Sbjct: 705 IEEITNETIGLDFKRNHKIHRAWKIMHPSI 734
>gi|217963800|ref|YP_002349478.1| RNA methyltransferase, RsmD family [Listeria monocytogenes HCC23]
gi|217333070|gb|ACK38864.1| RNA methyltransferase, RsmD family [Listeria monocytogenes HCC23]
gi|307571627|emb|CAR84806.1| methyltransferase, putative [Listeria monocytogenes L99]
Length = 185
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
L+ G PT ++ GD++LD F GSG G A + I+
Sbjct: 13 LKAVPGNNTRPTTDKVKESLFSIIGPFFDGDMVLDLFAGSGGLGIEALSRGAERAVFIDQ 72
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
I + + E+ +R + N
Sbjct: 73 ATLAIKTIHQNLEGCHFTERAEVYRNDAERALKLLHKNE 111
>gi|194014447|ref|ZP_03053064.1| RNA methyltransferase, RsmD family [Bacillus pumilus ATCC 7061]
gi|194013473|gb|EDW23038.1| RNA methyltransferase, RsmD family [Bacillus pumilus ATCC 7061]
Length = 185
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGI-EMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
G LD F GSG G A + I + ++ + E+ K
Sbjct: 42 GGWALDLFAGSGGLGIEALSRGFDHCIFVDRDMKAIQTIKGNLNQLELIDQSEVFRNEAK 101
Query: 283 RT 284
R
Sbjct: 102 RA 103
>gi|77165661|ref|YP_344186.1| adenine-specific DNA methylase [Nitrosococcus oceani ATCC 19707]
gi|76883975|gb|ABA58656.1| Adenine-specific DNA methylase containing a Zn-ribbon-like protein
[Nitrosococcus oceani ATCC 19707]
Length = 747
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY--NLQLN 54
I ++ +V KL S+D +F DPPY N+Q
Sbjct: 458 IHCADATTV--KLAPNSLDAVFTDPPYFGNVQYG 489
>gi|208435367|ref|YP_002267033.1| type II methylase [Helicobacter pylori G27]
gi|208433296|gb|ACI28167.1| type II methylase [Helicobacter pylori G27]
Length = 333
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 14 NSIFEWKDKIIK-GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSW 72
N I K+ II+ N+ + + L +DL+F DPPYN + + Y +LV W
Sbjct: 176 NPIKHDKNIIIERKNANELAKTL---KIDLVFIDPPYNSRQYSRFYHLYENLV-----QW 227
Query: 73 DKFSSFEAYDAFTRAWLLACRR 94
K + + R
Sbjct: 228 KKPKLYGTALKPLCENMSEYCR 249
>gi|254434202|ref|ZP_05047710.1| hypothetical protein NOC27_1133 [Nitrosococcus oceani AFC27]
gi|207090535|gb|EDZ67806.1| hypothetical protein NOC27_1133 [Nitrosococcus oceani AFC27]
Length = 736
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY--NLQLN 54
I ++ +V KL S+D +F DPPY N+Q
Sbjct: 447 IHCADATTV--KLAPNSLDAVFTDPPYFGNVQYG 478
>gi|297620377|ref|YP_003708514.1| methyltransferase [Waddlia chondrophila WSU 86-1044]
gi|297375678|gb|ADI37508.1| methyltransferase [Waddlia chondrophila WSU 86-1044]
Length = 185
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 26 GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
G+ I +L KL + D+I+ DPPY + +
Sbjct: 99 GDVIKLLPKL--GTFDVIYVDPPYFEKNRDFSH 129
>gi|226953125|ref|ZP_03823589.1| 23S rRNA m(2)G2445 methyltransferase [Acinetobacter sp. ATCC 27244]
gi|226836123|gb|EEH68506.1| 23S rRNA m(2)G2445 methyltransferase [Acinetobacter sp. ATCC 27244]
Length = 735
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 20/150 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + L++ + DLIF DPP +
Sbjct: 605 SKENFVLNGLTVDHADEQHMFFASDCFEWLKE-GHEQYDLIFIDPP---------TFSNS 654
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S + L +GTL+ +Y + +
Sbjct: 655 KKFYGTFDVQRDHVSL----------IKRAMNRLTSDGTLYFSNNYRGFELDEEIEAMYD 704
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ + + R ++ H ++
Sbjct: 705 IEEITNETIGLDFKRNHKIHRAWKIMHPSI 734
>gi|116873489|ref|YP_850270.1| methyltransferase, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742367|emb|CAK21491.1| methyltransferase, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 185
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
L+ G PT ++ GD +LD F GSG G A + I+
Sbjct: 13 LKAVPGNNTRPTTDKVKESLFSIIGPFFDGDTVLDLFAGSGGLGIEALSRGAERAVFIDQ 72
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
I + + E+ +R + N
Sbjct: 73 ATLAIKTIRQNLEGCHFTDRAEVYRNDAERALKLLHKNE 111
>gi|78358462|ref|YP_389911.1| hypothetical protein Dde_3423 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78220867|gb|ABB40216.1| hypothetical protein Dde_3423 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 256
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDY-----IDIATKRIASVQPLGNI 274
G ++LDPF G GTS + + IG ++ ++A R+ P
Sbjct: 45 GAVVLDPFIGGGTSLVESMRCNAWVIGFDIDPVATFITRFELAASRMGDHYPEIEQ 100
>gi|315126714|ref|YP_004068717.1| 23S rRNA m(2)G2445 methyltransferase [Pseudoalteromonas sp. SM9913]
gi|315015228|gb|ADT68566.1| 23S rRNA m(2)G2445 methyltransferase [Pseudoalteromonas sp. SM9913]
Length = 705
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
+++ A+N+ N+ + ++ + + + LE DLIF DPP S
Sbjct: 581 QDNFALNDISNTRYRFE----QADCLKWLEH-AQGQYDLIFLDPP------------TFS 623
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ D++D + + +++L P+GT +I S + + + +
Sbjct: 624 NSKRMKDAFDVQNDHIKLLTW-------VKKILSPSGT--LIFSNNKRGFVMDEVGLMGL 674
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAH 149
+ + + K+ R ++ N+
Sbjct: 675 GLKAENISEKTLSPDFKRNKKIHNSW 700
>gi|76788177|ref|YP_329186.1| methyltransferase [Streptococcus agalactiae A909]
gi|76563234|gb|ABA45818.1| methyltransferase, putative [Streptococcus agalactiae A909]
Length = 179
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-F 248
G L+ DG+ PT ++ G +LD F GSG+ A
Sbjct: 8 FGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQA 67
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ +E + + + IA + +L + R
Sbjct: 68 VLVEKDRRAQVVIQENIAMTKSPEQFQLLKMEANRA 103
>gi|22536632|ref|NP_687483.1| type II DNA modification methyltransferase [Streptococcus
agalactiae 2603V/R]
gi|76797744|ref|ZP_00780011.1| methyltransferase, putative [Streptococcus agalactiae 18RS21]
gi|22533470|gb|AAM99355.1|AE014212_14 type II DNA modification methyltransferase, putative [Streptococcus
agalactiae 2603V/R]
gi|76586892|gb|EAO63383.1| methyltransferase, putative [Streptococcus agalactiae 18RS21]
Length = 179
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-F 248
G L+ DG+ PT ++ G +LD F GSG+ A
Sbjct: 8 FGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQA 67
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ +E + + + IA + +L + R
Sbjct: 68 VLVEKDRRAQVVIQENIAMTKSPEQFQLLKMEANRA 103
>gi|25010569|ref|NP_734964.1| hypothetical protein gbs0499 [Streptococcus agalactiae NEM316]
gi|77411420|ref|ZP_00787766.1| type II DNA modification methyltransferase, putative [Streptococcus
agalactiae CJB111]
gi|77413559|ref|ZP_00789747.1| putative type II DNA modification methyltransferase [Streptococcus
agalactiae 515]
gi|23094922|emb|CAD46143.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160388|gb|EAO71511.1| putative type II DNA modification methyltransferase [Streptococcus
agalactiae 515]
gi|77162506|gb|EAO73471.1| type II DNA modification methyltransferase, putative [Streptococcus
agalactiae CJB111]
Length = 250
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-F 248
G L+ DG+ PT ++ G +LD F GSG+ A
Sbjct: 79 FGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQA 138
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ +E + + + IA + +L + R
Sbjct: 139 VLVEKDRRAQVVIQENIAMTKSPEQFQLLKMEANRA 174
>gi|195394858|ref|XP_002056056.1| GJ10432 [Drosophila virilis]
gi|194142765|gb|EDW59168.1| GJ10432 [Drosophila virilis]
Length = 491
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+ + GD++ DPF G+G+ A K +G ++ + A R
Sbjct: 209 QAMVRDGDLVFDPFVGTGSLLVSAAKFGGYVLGADIDFMMVH-ARCR 254
>gi|152980208|ref|YP_001354826.1| methylase [Janthinobacterium sp. Marseille]
gi|151280285|gb|ABR88695.1| methylase [Janthinobacterium sp. Marseille]
Length = 198
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 23 IIKGNSISVLEKLPAK--SVDLIFADPPY 49
I++G++++ ++ + DLIF DPPY
Sbjct: 102 IVRGDALTAIQGMARNAAKFDLIFLDPPY 130
>gi|323477540|gb|ADX82778.1| hypothetical protein SiH_1430 [Sulfolobus islandicus HVE10/4]
Length = 312
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 208 KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
KP L+ I+ + ++DPF G+GT A K + +++ +A I
Sbjct: 9 KPLKLIDEIM---SDIDGTVIDPFGGAGTIVLSALKHGNKGVYLDINPYAWLVAFVNI 63
>gi|315161631|gb|EFU05648.1| RNA methyltransferase, RsmD family [Enterococcus faecalis TX0645]
Length = 217
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 1/109 (0%)
Query: 177 DVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGT 236
D + + +I G RL+ DG+ PT ++ G + LD + GSG
Sbjct: 28 DKGVETMRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFEGGMALDLYSGSGG 87
Query: 237 SGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
A I IE + + + I + E+ + R
Sbjct: 88 LAIEAVSRGMDKSICIEKNFAALKVIKENIGITKEPEKFEVRKMDANRA 136
>gi|195927220|pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK---LHPTQK------- 208
P Y + N S I G E +R + + +HP
Sbjct: 218 PDPTNYFDFDSIYWSVNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQ 277
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
L+ ++ G+ ILD + G GT G K + G + + I++A + +
Sbjct: 278 AVNLVRKVSELV--EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVE 333
>gi|195927327|pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK---LHPTQK------- 208
P Y + N S I G E +R + + +HP
Sbjct: 218 PDPTNYFDFDSIYWSVNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQ 277
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
L+ ++ G+ ILD + G GT G K + G + + I++A + +
Sbjct: 278 AVNLVRKVSELV--EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVE 333
>gi|154686431|ref|YP_001421592.1| YpiP [Bacillus amyloliquefaciens FZB42]
gi|154352282|gb|ABS74361.1| YpiP [Bacillus amyloliquefaciens FZB42]
Length = 256
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 25 KGNSISVLEKLPAKSVDLIFADP 47
+ L +LP SVD+I+ DP
Sbjct: 160 HADCADYLLELPDSSVDVIYFDP 182
>gi|154493884|ref|ZP_02033204.1| hypothetical protein PARMER_03228 [Parabacteroides merdae ATCC
43184]
gi|154086144|gb|EDN85189.1| hypothetical protein PARMER_03228 [Parabacteroides merdae ATCC
43184]
Length = 185
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
+I+G+ L P + D IFADPPY L+
Sbjct: 95 TLIRGDVFRYLHSAPTQGFDFIFADPPYALK 125
>gi|118444370|ref|YP_878304.1| methyltransferase [Clostridium novyi NT]
gi|118134826|gb|ABK61870.1| methyltransferase, putative [Clostridium novyi NT]
Length = 185
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 24 IKGNSISVLEKLPAKS--VDLIFADPPY 49
+ +S + L+ K DLIF DPPY
Sbjct: 96 LNMDSYNALKNFAKKKKIFDLIFIDPPY 123
>gi|114563827|ref|YP_751340.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella frigidimarina
NCIMB 400]
gi|122299241|sp|Q07ZR3|RLML_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|114335120|gb|ABI72502.1| putative RNA methylase [Shewanella frigidimarina NCIMB 400]
Length = 712
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 26/154 (16%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
K + A+N + +++ I+ + + ++ + +LIF DPP S
Sbjct: 585 KENFALNGLSGAKYDF----IQADCLQWIKDNSHQKYELIFIDPP------------TFS 628
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
+ DSWD L ++L PNG L + L
Sbjct: 629 NSKRMEDSWDVQRDHAEM-------LGGLIKLLSPNGELIFSNNKRKFKMDIEALNQAG- 680
Query: 124 WILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
++ +++ + L A
Sbjct: 681 --IDVTNIDHLCLPLDYKRNPHIHNVWLLTHAKK 712
>gi|270001932|gb|EEZ98379.1| hypothetical protein TcasGA2_TC000838 [Tribolium castaneum]
Length = 359
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID--IATKRIASVQPLGNIE 275
+ K GDI+LDPF GSG+ A + +G ++ + RI + +
Sbjct: 103 QAQVKDGDIVLDPFVGSGSLLVAAAEFGGFVLGGDIDYLMLHARTRPSRIKQKERAADES 162
Query: 276 LTVLTGKRTEPRVAFNLLVER 296
+ + ++L+
Sbjct: 163 IKANMEQYNLQHKYLDVLIND 183
>gi|260768455|ref|ZP_05877389.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio furnissii
CIP 102972]
gi|260616485|gb|EEX41670.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio furnissii
CIP 102972]
Length = 638
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ ++ + + LEK DLIF DPP R + S F
Sbjct: 526 HQYVQADCLQWLEK-ATGQYDLIFIDPP----TFSNSKRMEQS-----------FDVQRD 569
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + ++ L + ++ P+
Sbjct: 570 HIQLMTN----LKRILRPEGTIVFSNNKRHFKMDMEQMEALGLE--AQNISSQTLPLDFE 623
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 624 RNKHIHNCW 632
>gi|299770931|ref|YP_003732957.1| 23S rRNA m(2)G2445 methyltransferase [Acinetobacter sp. DR1]
gi|298701019|gb|ADI91584.1| 23S rRNA m(2)G2445 methyltransferase [Acinetobacter sp. DR1]
Length = 736
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 20/153 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + L++ + DLIF DPP +
Sbjct: 604 SKENFVLNGLTVDHADEQHMFFASDCFEWLKE-GHEQYDLIFIDPP---------TFSNS 653
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S + L GTL+ +Y +
Sbjct: 654 KKFYGTFDVQRDHISL----------IKRAMNRLHSEGTLYFSNNYRGFEMDEEIEAIFQ 703
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ R ++ H L
Sbjct: 704 VEEITSETIGLDFKRNQKIHRAWKIQHPGLDQY 736
>gi|16331305|ref|NP_442033.1| hypothetical protein slr0383 [Synechocystis sp. PCC 6803]
gi|1001477|dbj|BAA10103.1| slr0383 [Synechocystis sp. PCC 6803]
Length = 186
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNG 55
+++G+ + +L L ++ D I+ DPPY L
Sbjct: 92 VLRGDVLKLLPSLAGQTFDRIYFDPPYGSGLYN 124
>gi|331266046|ref|YP_004325676.1| modification methylase [Streptococcus oralis Uo5]
gi|326682718|emb|CBZ00335.1| modification methylase [Streptococcus oralis Uo5]
Length = 423
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 203 LHPTQKPEALLSRILVSSTKPG---DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ---- 255
+P + ++ ILDPF GSGT+ +K S IGI++
Sbjct: 33 AYPATMVPDMQYELIKLIKSEDLSITNILDPFHGSGTTLVEGEKNNLSPIGIDINPLANL 92
Query: 256 -----------DYIDIATKRIASVQPLGNIELT 277
YIDIA RI + E
Sbjct: 93 ITKVKLQGVNKKYIDIANNRIEKFLKSDSFEFD 125
>gi|307243233|ref|ZP_07525404.1| O-methyltransferase [Peptostreptococcus stomatis DSM 17678]
gi|306493361|gb|EFM65343.1| O-methyltransferase [Peptostreptococcus stomatis DSM 17678]
Length = 214
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 2 SQKNSLAINENQNSI----FEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
+++N L + Q +I E + KI+ G++ L+ L S D+IF D
Sbjct: 86 TERNPLMLERAQENIKKAGMEDRIKILVGDAEETLKDL-EGSFDMIFID 133
>gi|218257993|ref|ZP_03474446.1| hypothetical protein PRABACTJOHN_00099 [Parabacteroides johnsonii
DSM 18315]
gi|218225828|gb|EEC98478.1| hypothetical protein PRABACTJOHN_00099 [Parabacteroides johnsonii
DSM 18315]
Length = 189
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
+I+G+ L PA+ D IFADPPY L+
Sbjct: 95 TLIRGDVFRYLHSAPARHFDFIFADPPYALK 125
>gi|254168246|ref|ZP_04875092.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
T469]
gi|197622755|gb|EDY35324.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
T469]
Length = 310
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
E R K+ +P L ++ ++ K G+ ILDPF G+G+ + G
Sbjct: 138 ESRRAKNLPISYPITMHPRLARAMINLARVKRGERILDPFCGTGSILIEGAIIGMKMHGS 197
Query: 252 EMKQDYIDIATKRIASV 268
++ + + + + +
Sbjct: 198 DIDERMLKASQTNLKTF 214
>gi|326794005|ref|YP_004311825.1| hypothetical protein Marme_0706 [Marinomonas mediterranea MMB-1]
gi|326544769|gb|ADZ89989.1| hypothetical protein Marme_0706 [Marinomonas mediterranea MMB-1]
Length = 401
Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 23 IIKGNSISVLEKLPAKS--VDLIFADPPYNLQLNGQLYRPDH 62
++ G++ ++ L D++ DPP + + +
Sbjct: 275 LMNGDAFEAMQSLIEDKERFDVVVMDPPAFIARRKDIKAGEG 316
>gi|296103042|ref|YP_003613188.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057501|gb|ADF62239.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 702
Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
++++ + + L + DLIF DPP D F
Sbjct: 591 HRLMQADVLGWLRD-TDEQFDLIFIDPP---------------TFSNSKRMEDSFDVQRD 634
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + L L + + +K+
Sbjct: 635 HLRLMTD----LKRLLRKGGTIMFSNNKRGFRMDHDGLAALG--LKAQEISQKTLSQDFA 688
Query: 141 RGRRFQNAH 149
R R+ N
Sbjct: 689 RNRQIHNCW 697
>gi|219870998|ref|YP_002475373.1| HemK-like protein/protein-glutamine N-methyl transferase
[Haemophilus parasuis SH0165]
gi|219691202|gb|ACL32425.1| HemK-like protein/protein-glutamine N-methyl transferase
[Haemophilus parasuis SH0165]
Length = 289
Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 2 SQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
Q +++ + E +++ + ++ + L+ + DLI ++PPY + + L +
Sbjct: 153 KQPDAVQLAEKNRQKLGFENVRFLQSDWFEALK---NQRFDLIVSNPPYIDKDDENLTQG 209
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D + +T + + + + L PNG L + + + + Q
Sbjct: 210 D-VRFEPLTALVAEQNGLSD----LQKIIQNAPLYLTPNGALMLEHGWQQAASVQDIFQQ 264
Query: 121 LNF 123
+
Sbjct: 265 NQW 267
>gi|167855821|ref|ZP_02478573.1| HemK-like protein [Haemophilus parasuis 29755]
gi|167853034|gb|EDS24296.1| HemK-like protein [Haemophilus parasuis 29755]
Length = 416
Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 2 SQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
Q +++ + E +++ + ++ + L+ + DLI ++PPY + + L +
Sbjct: 280 KQPDAVQLAEKNRQKLGFENVRFLQSDWFEALK---NQRFDLIVSNPPYIDKDDENLTQG 336
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D + +T + + + + L PNG L + + + + Q
Sbjct: 337 D-VRFEPLTALVAEQNGLSD----LQKIIQNAPLYLTPNGALMLEHGWQQAASVQDIFQQ 391
Query: 121 LNF 123
+
Sbjct: 392 NQW 394
>gi|328863984|gb|EGG13083.1| hypothetical protein MELLADRAFT_32431 [Melampsora larici-populina
98AG31]
Length = 218
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 4 KNSLAINENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPP 48
N +A+ E+ +++ +DKI I + I ++ SVD+IF PP
Sbjct: 70 PNKIALAEHNATVYGVEDKIEFICADFIEWIQNQEKGSVDVIFLSPP 116
>gi|328696636|ref|XP_001943731.2| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
[Acyrthosiphon pisum]
Length = 466
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
GD++LDPF GSG+ A K IG ++
Sbjct: 210 GDLVLDPFVGSGSLLVAAAKFGGHVIGTDIDF 241
>gi|258591604|emb|CBE67905.1| Modification methylase MunI (Adenine-specific methyltransferase
MunI) (M.MunI) [NC10 bacterium 'Dutch sediment']
Length = 247
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 17/199 (8%)
Query: 35 LPAKSVDLIFADPP--YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLAC 92
P K D+I+ADPP YN +L + +D + + +SF+ Y L+
Sbjct: 49 FPKKKFDIIYADPPWDYNGKLQFDRSSKNADEIDLSKNIFISSASFK-YPTLKLDELMTM 107
Query: 93 --RRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+ K + L++ + + + W ++ ++
Sbjct: 108 PVHEIAKDDCLLFM---WATSPHLAQAISLGQKWGFGYKTVAFVWDKMIHNPGKYTLSNC 164
Query: 151 TLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPE 210
L + + + ++ S I E K+ PTQ
Sbjct: 165 ELCLVFKRGRIPQPRGARNIQQLIRSPRRVHSMKPDEIREAIE--------KMFPTQDRI 216
Query: 211 ALLSRI-LVSSTKPGDIIL 228
L +R+ T+ G +L
Sbjct: 217 ELFARMKSKGWTQWGLDVL 235
>gi|302345803|ref|YP_003814156.1| RNA methyltransferase, RsmD family [Prevotella melaninogenica ATCC
25845]
gi|302149703|gb|ADK95965.1| RNA methyltransferase, RsmD family [Prevotella melaninogenica ATCC
25845]
Length = 176
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNL 51
+ +IKG+ L+ + DLIFADPPY L
Sbjct: 93 EHILIKGDVFRFLKSC-HQKFDLIFADPPYAL 123
>gi|14521283|ref|NP_126758.1| putative RNA methyltransferase [Pyrococcus abyssi GE5]
gi|50401701|sp|Q9UZR7|Y1078_PYRAB RecName: Full=Uncharacterized RNA methyltransferase PYRAB10780
gi|5458501|emb|CAB49989.1| RNA methyltransferase, putative [Pyrococcus abyssi GE5]
Length = 405
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 159 PKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRNKDGEK---LHPTQK------- 208
P Y + N S I G E +R + + +HP
Sbjct: 198 PDPTNYFDFDSIYWSVNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQ 257
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
L+ ++ G+ ILD + G GT G K + G + + I++A + +
Sbjct: 258 AVNLVRKVSELV--EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVE 313
>gi|262372810|ref|ZP_06066089.1| SAM-dependent methyltransferase [Acinetobacter junii SH205]
gi|262312835|gb|EEY93920.1| SAM-dependent methyltransferase [Acinetobacter junii SH205]
Length = 736
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 39/150 (26%), Gaps = 20/150 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + L++ + DLIF DPP +
Sbjct: 607 SKENFVLNGLTVDHADEQHMFFASDCFEWLKE-GHEQYDLIFIDPP---------TFSNS 656
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S + L +GTL+ +Y +
Sbjct: 657 KKFYGTFDVQRDHVSL----------IKRAMNRLTSDGTLYFSNNYRGFELDEEIEAMYQ 706
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETL 152
+ + R ++ H+ +
Sbjct: 707 IEEITSETIGLDFKRNHKIHRAWKIQHQQI 736
>gi|255009723|ref|ZP_05281849.1| DNA methylase, putative [Bacteroides fragilis 3_1_12]
gi|313147508|ref|ZP_07809701.1| DNA methylase [Bacteroides fragilis 3_1_12]
gi|313136275|gb|EFR53635.1| DNA methylase [Bacteroides fragilis 3_1_12]
Length = 377
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 204 HPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ P ++ ++ GD I+DPF G +S L R +GIE+
Sbjct: 25 YYAMFPLDFAFDVVKKYSRKGDCIIDPFAGRCSSVFAGGVLGRVSLGIEINP 76
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 22 KIIKGNS----ISVLEKLP--AKSVDLIFADPPYNLQLNG------QLYRPDHSLVDAV- 68
++I G+S + V ++ K L+F PPY + +++ S
Sbjct: 221 QVIFGDSTIKLVDVANEVKASNKKFSLLFTSPPYCSITDYHADQWLRIWMLGGSENPQYL 280
Query: 69 -TDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+F + + Y C ++K N T++V
Sbjct: 281 KDKHKGRFVNKQEYYNLLDNVFGLCAGIMKDNATVYVRTDARQ 323
>gi|300905269|ref|ZP_07123041.1| N-6 DNA Methylase [Escherichia coli MS 84-1]
gi|301305093|ref|ZP_07211193.1| N-6 DNA Methylase [Escherichia coli MS 124-1]
gi|300402853|gb|EFJ86391.1| N-6 DNA Methylase [Escherichia coli MS 84-1]
gi|300839598|gb|EFK67358.1| N-6 DNA Methylase [Escherichia coli MS 124-1]
gi|315255852|gb|EFU35820.1| N-6 DNA Methylase [Escherichia coli MS 85-1]
Length = 715
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 11/136 (8%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD----------AVTDS 71
+I ++ L S DLI +PP+ + +S + +
Sbjct: 432 QIFYTDNSLTTNALKPNSFDLICTNPPFGTPKFDKGKNGQNSKANYEANMEQVLGGFRPT 491
Query: 72 WDKFSSFEA-YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
S+ A YD W L NG G ++ R G + + +
Sbjct: 492 KKVVDSYNAWYDHVKMKWQDIGDLELDENGEPKWAGYRTDLRRTGGTDKKPFYSLQPTTA 551
Query: 131 WRKSNPMPNFRGRRFQ 146
P+ +G
Sbjct: 552 GLALGSKPDSKGNWQP 567
>gi|42520439|ref|NP_966354.1| hypothetical protein WD0583 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410178|gb|AAS14288.1| hypothetical protein WD_0583 [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 225
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1 MSQKNSLAINENQNSIF-EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+ Q N L +N + + + I ++ + + DL+ D PYN
Sbjct: 71 IQQLNKLPHLATENLVVTNKMNLTLNEEGIEKIKNMVEEKFDLVVIDSPYN 121
>gi|330908688|gb|EGH37202.1| DNA-methyltransferase [Escherichia coli AA86]
Length = 299
Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 2 SQKNSLAINENQNSIFEWKDKI--IKGNSISVLEK----LPAKSVDLIFADPPYNLQLNG 55
++ N + + I E + +I ++I ++K LP S L + DPPY ++ G
Sbjct: 146 ARYNKSDLISRIHKISENRHRIDLYNMDAIDFIKKIVIQLPQNS--LTYLDPPYYIKGKG 203
>gi|323455017|gb|EGB10886.1| hypothetical protein AURANDRAFT_2684 [Aureococcus anophagefferens]
Length = 401
Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 219 SSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQD 256
+ G ++LDPF G+G+ G ++
Sbjct: 212 ARCDVGSLVLDPFAGTGSILVACALFGGFCYGSDIDWK 249
>gi|317129321|ref|YP_004095603.1| methyltransferase [Bacillus cellulosilyticus DSM 2522]
gi|315474269|gb|ADU30872.1| methyltransferase [Bacillus cellulosilyticus DSM 2522]
Length = 182
Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 41/141 (29%), Gaps = 30/141 (21%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
G +LD + GSG A + I+ + I+ I S + +E+
Sbjct: 42 GGSMLDLYGGSGAIAIEALSRGIEKAVIIDRDRKAIETIYMNIKSCKIEDEVEVYRTEAS 101
Query: 283 RTE----------------PRVAFNLLVERGLIQPGQILTNAQGN----ISATVCADGT- 321
R P L E L L + G +ATV + +
Sbjct: 102 RALNALRKKGSTFDLIFLDPPYLKQRLEEELLFIAEHRLLDKLGKIVVEHAATVELNESY 161
Query: 322 --------LISGTELGSIHRV 334
G + SI+ +
Sbjct: 162 SDLTKIREERYGDTIISIYSI 182
>gi|317056962|ref|YP_004105429.1| DNA methylase N-4/N-6 domain-containing protein [Ruminococcus albus
7]
gi|315449231|gb|ADU22795.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
Length = 597
Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 36 PAKSVDLIFADPPYN-------LQLNGQLYRPDHS-LVDAVTDSWDKFSSFEAYDAFTRA 87
KS+D +F DPP+ + +L+ P + + V S + + + Y
Sbjct: 397 LDKSIDFVFTDPPFGDYIPYAEVNQINELWLPKVTERSEEVIISNAQQKNEDNYRDMLTK 456
Query: 88 WLLACRRVLKPNGTLWVIG 106
RV + ++ ++
Sbjct: 457 VFREINRVATDDCSIAMVF 475
>gi|319744510|gb|EFV96865.1| type II DNA modification methyltransferase [Streptococcus
agalactiae ATCC 13813]
Length = 250
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-F 248
G L+ DG+ PT ++ G +LD F GSG+ A
Sbjct: 79 FGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQA 138
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ +E + + + IA + G +L + R
Sbjct: 139 VLVEKDRRAQVVIQENIAMTKSPGQFQLLKMEANRA 174
>gi|269121055|ref|YP_003309232.1| modification methylase, HemK family [Sebaldella termitidis ATCC
33386]
gi|268614933|gb|ACZ09301.1| modification methylase, HemK family [Sebaldella termitidis ATCC
33386]
Length = 361
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
Query: 7 LAINENQNSIFEWKDK-IIKGNSISVLEK--LPA---KSVDLIFADPPYNLQLNGQLYRP 60
+ I++N I K+K ++K +++ L+ S D+I ++PPY + +
Sbjct: 220 IDISDNALEIAN-KNKGLLKADNVKFLKSNLFQEVNYHSFDMIISNPPYIPKSEYETLSD 278
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
D + + + ++ F LK G L Y+ I ++++
Sbjct: 279 D----VRMHEPEEALTAENEGLFFYYEISKNASDYLKNGGRLIFECGYNQAEIIESIMKE 334
Query: 121 LNFWILN 127
+ +
Sbjct: 335 TGYKNIE 341
>gi|241888636|ref|ZP_04775943.1| modification methylase lladchia [Gemella haemolysans ATCC 10379]
gi|241864659|gb|EER69034.1| modification methylase lladchia [Gemella haemolysans ATCC 10379]
Length = 279
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 6 SLAINENQNSIFEWKD----KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+ E NSI ++ + KII G+ L + D ++ DPPY
Sbjct: 149 KIVDEELINSISDYLNSNEIKIISGDFEDSLNTVKEG--DFVYFDPPY 194
>gi|290892199|ref|ZP_06555195.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290558322|gb|EFD91840.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
Length = 185
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
L+ G PT ++ GDI+LD F GSG G A + I+
Sbjct: 13 LKAVPGNNTRPTTDKVKESLFSIIGPFFDGDIVLDLFAGSGGLGIEALSRGAERAVFIDQ 72
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
I + + E+ +R + N
Sbjct: 73 ATLAIKTIRQNLEGCHFTERAEVYRNDAERALKLLHKNE 111
>gi|119468454|ref|ZP_01611545.1| Putative ribosomal RNA small subunit methyltransferase D
[Alteromonadales bacterium TW-7]
gi|119447962|gb|EAW29227.1| Putative ribosomal RNA small subunit methyltransferase D
[Alteromonadales bacterium TW-7]
Length = 380
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 29/123 (23%)
Query: 5 NSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
S +N QN + D + I+ + ++ SVD++ +PP+
Sbjct: 268 ESARLNVEQNMAERFDDCEFIENDCLTG---FEKNSVDMVLCNPPF-------------H 311
Query: 64 LVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNF 123
AVTD + A+ + LK G L +IG+ H + N
Sbjct: 312 QAQAVTD----------HIAWQM--FKQAKDTLKEGGELRIIGNRHLDYHDKLNRMFGNC 359
Query: 124 WIL 126
+L
Sbjct: 360 KLL 362
>gi|332308275|ref|YP_004436126.1| methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332175604|gb|AEE24858.1| methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 194
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
Q+N + + ++S K++ G+++S L++L + DL+F DPP+N
Sbjct: 95 QQNLITLKATEDSA-----KVLCGDALSYLKQLNVE-FDLLFLDPPFN 136
>gi|325262836|ref|ZP_08129572.1| O-methyltransferase family protein [Clostridium sp. D5]
gi|324031930|gb|EGB93209.1| O-methyltransferase family protein [Clostridium sp. D5]
Length = 218
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFAD 46
+++G+++ VL+ L S D IF D
Sbjct: 108 TLLEGDALEVLKSL-EGSFDFIFMD 131
>gi|227503859|ref|ZP_03933908.1| rRNA or tRNA methylase [Corynebacterium striatum ATCC 6940]
gi|227199482|gb|EEI79530.1| rRNA or tRNA methylase [Corynebacterium striatum ATCC 6940]
Length = 296
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 22 KIIKGNSIS--VLEKLPAKSVDLIFADPPY 49
++++G++ + L KL SVDL+ +PPY
Sbjct: 179 RLVQGDATAPATLRKL-DGSVDLVLTNPPY 207
>gi|189234369|ref|XP_974411.2| PREDICTED: similar to CG1074 CG1074-PA [Tribolium castaneum]
Length = 464
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID--IATKRIASVQPLGNIE 275
+ K GDI+LDPF GSG+ A + +G ++ + RI + +
Sbjct: 208 QAQVKDGDIVLDPFVGSGSLLVAAAEFGGFVLGGDIDYLMLHARTRPSRIKQKERAADES 267
Query: 276 LTVLTGKRTEPRVAFNLLVER 296
+ + ++L+
Sbjct: 268 IKANMEQYNLQHKYLDVLIND 288
>gi|218440023|ref|YP_002378352.1| methyltransferase [Cyanothece sp. PCC 7424]
gi|218172751|gb|ACK71484.1| methyltransferase [Cyanothece sp. PCC 7424]
Length = 180
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+I+G+ ++ + L K D I+ DPPY
Sbjct: 92 VIRGDVLTKMSSLAGKKFDRIYFDPPY 118
>gi|78486271|ref|YP_392196.1| hypothetical protein Tcr_1932 [Thiomicrospira crunogena XCL-2]
gi|78364557|gb|ABB42522.1| Methyltransferase superfamily protein [Thiomicrospira crunogena
XCL-2]
Length = 205
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+I+ +S+ L++ P K D+IF DPP+N L
Sbjct: 114 VIQVDSLQWLQQAPPKVFDVIFLDPPFNQGL 144
>gi|315640769|ref|ZP_07895871.1| methyltransferase [Enterococcus italicus DSM 15952]
gi|315483524|gb|EFU74018.1| methyltransferase [Enterococcus italicus DSM 15952]
Length = 187
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 1/111 (0%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SF 248
G +L++ G PT ++ G +LD F GSG A
Sbjct: 8 YGGRKLKSLPGTNTRPTTDKVKGAIYNMLGPYFDGGKVLDLFSGSGGLAIEAISRGMDKA 67
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
+ ++ I I + I + + + +++ + ++
Sbjct: 68 VCVDKNYQAISIIKENIQITKEPEKFVVLKMDANAALKKLSGEEMKFDLIL 118
>gi|313622959|gb|EFR93258.1| RNA methyltransferase, RsmD family [Listeria innocua FSL J1-023]
Length = 185
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 195 LRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RSFIGIEM 253
L+ G PT ++ GDI+LD F GSG G A + I+
Sbjct: 13 LKAVPGNNTRPTTDKVKESLFSIIGPFFDGDIVLDLFAGSGGLGIEALSRGAERAVFIDQ 72
Query: 254 KQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNL 292
I + + + E+ +R + N
Sbjct: 73 ATLAIKTIRQNLEGCRFTERAEVYRNDAERALKLLHKNE 111
>gi|254173486|ref|ZP_04880158.1| conserved hypothetical protein TIGR01177 [Thermococcus sp. AM4]
gi|214032178|gb|EEB73008.1| conserved hypothetical protein TIGR01177 [Thermococcus sp. AM4]
Length = 333
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 196 RNKDGEKLHPTQK--PEALLSRI---LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIG 250
++ + K H P +L R+ LV+ TK +LDP G+G A L G
Sbjct: 147 KDFERRKAHHRPFFRPISLHPRVSRALVNLTKARKELLDPMMGAGGILIEAGLLGLKVYG 206
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTE 285
+++K + ++ A + + + EL + R E
Sbjct: 207 VDIKPEMVEGAEMNLRHY-GVKDFELRLGDATRLE 240
>gi|166367862|ref|YP_001660135.1| DNA modification methyltransferase related protein [Microcystis
aeruginosa NIES-843]
gi|166090235|dbj|BAG04943.1| DNA modification methyltransferase related protein [Microcystis
aeruginosa NIES-843]
Length = 904
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 23/171 (13%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSI--SVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
+ + E + II +++ + D I +PP+ L G+ R +
Sbjct: 437 DRFNLTEASLPLDTLDSNIICADALFTDW------QKADAIIGNPPF---LGGKHMRLNL 487
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIG----SYHNIFRIGTML 118
S D V + +FS + F W L G ++G S
Sbjct: 488 SD-DYVNKVFARFSEVKDSVDFCSYWFRLAHDQLDEKGRAGLVGTNSISQGKSRVAALDY 546
Query: 119 QNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYD 169
N +++ + + N H +++ S Y N+
Sbjct: 547 ITHNGGHIHEAISTQPWSG-------EANVHVSIVNWSKIEPVSYYLDNHQ 590
>gi|304314880|ref|YP_003850027.1| DNA modification methylase [Methanothermobacter marburgensis str.
Marburg]
gi|302588339|gb|ADL58714.1| predicted DNA modification methylase [Methanothermobacter
marburgensis str. Marburg]
Length = 336
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 26/89 (29%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKF 75
I +++ +I+ ++ L VD I DPPY + + R
Sbjct: 234 ITDFE--VIRSDARD-LR--LEGGVDAIVTDPPYGISASTAGER---------------- 272
Query: 76 SSFEAYDAFTRAWLLACRRVLKPNGTLWV 104
S + Y F L + LK +G + +
Sbjct: 273 -SEKLYREF----LNSAYSNLKEDGVICM 296
Score = 36.9 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 204 HPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+P L +R + ++ + GD +LDPF G+G A + +G ++ ++
Sbjct: 167 YPGSMSPKL-ARCMVNLAGVRSGDRLLDPFCGTGGILIEAGLMDVRVMGADIDWRMVEGT 225
Query: 262 TKRIASVQPLGNIELTVL 279
K + +
Sbjct: 226 RKNLQHYGITDFEVIRSD 243
>gi|281416249|ref|YP_003347598.1| DNA adenine methyltransferase [Enterococcus phage phiFL3A]
gi|270209514|gb|ACZ64055.1| DNA adenine methyltransferase [Enterococcus phage phiFL3A]
gi|270209582|gb|ACZ64122.1| DNA adenine methyltransferase [Enterococcus phage phiFL3B]
Length = 444
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S W I +S+ + E + +S DL+F PPY + ++Y D + +
Sbjct: 273 SDINW----ICDDSLDIDEHIENESQDLLFTCPPY---ADLEVYSDDERDISNM------ 319
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
S+E ++ L R LK N V S
Sbjct: 320 --SYEEFEEVYSEILKRSARKLKDNRFAVVTISD 351
>gi|256003342|ref|ZP_05428333.1| O-methyltransferase family 3 [Clostridium thermocellum DSM 2360]
gi|255992632|gb|EEU02723.1| O-methyltransferase family 3 [Clostridium thermocellum DSM 2360]
Length = 191
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
N + + + + II+G+++ VL+ L D+IF D
Sbjct: 76 NVKKAGLQDVIN-IIEGDALEVLKCL-EHKYDMIFLD 110
>gi|120600750|ref|YP_965324.1| hypothetical protein Sputw3181_3966 [Shewanella sp. W3-18-1]
gi|146291211|ref|YP_001181635.1| hypothetical protein Sputcn32_0100 [Shewanella putrefaciens CN-32]
gi|150416297|sp|A1RQ25|Y3966_SHESW RecName: Full=UPF0341 protein Sputw3181_3966
gi|166919119|sp|A4Y1K3|Y100_SHEPC RecName: Full=UPF0341 protein Sputcn32_0100
gi|120560843|gb|ABM26770.1| protein of unknown function DUF548 [Shewanella sp. W3-18-1]
gi|145562901|gb|ABP73836.1| protein of unknown function DUF548 [Shewanella putrefaciens CN-32]
gi|319428427|gb|ADV56501.1| protein of unknown function DUF548 [Shewanella putrefaciens 200]
Length = 259
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 15 SIFEWKD---KIIKGNSISVLEKLPAKSVDLIFADP 47
I +W ++ G+S+ L KL + VD+++ DP
Sbjct: 146 EIGDWMHERMQLFHGSSLEALSKLEQE-VDVVYLDP 180
>gi|114561462|ref|YP_748975.1| putative methyltransferase [Shewanella frigidimarina NCIMB 400]
gi|114332755|gb|ABI70137.1| putative methyltransferase [Shewanella frigidimarina NCIMB 400]
Length = 199
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+I + + VL K D++F DPP+
Sbjct: 104 VINADCLQVLAKGTPGGFDIVFIDPPF 130
>gi|260584660|ref|ZP_05852406.1| RNA methyltransferase, RsmD family [Granulicatella elegans ATCC
700633]
gi|260157683|gb|EEW92753.1| RNA methyltransferase, RsmD family [Granulicatella elegans ATCC
700633]
Length = 185
Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SF 248
G LR G+ PT ++ G ++LD + GSG A
Sbjct: 8 FGGRHLRAVPGKNTRPTTDKIKESLFNILGGYFDGGVMLDMYAGSGGVAIEAVSRGMDHA 67
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
E + I + I + L K
Sbjct: 68 FLFENNRQAIQTIEQNIDITKSPDQFTLLKQNVK 101
>gi|56475783|ref|YP_157372.1| methylation subunit, type III restriction-modification system
[Aromatoleum aromaticum EbN1]
gi|56311826|emb|CAI06471.1| probable methylation subunit, type III restriction-modification
system [Aromatoleum aromaticum EbN1]
Length = 1121
Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 20/138 (14%)
Query: 23 IIKGNSISVLE----KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
++ + L +L + + ++ DPPYN Y+ +
Sbjct: 509 LLHAENFQALNFAHSRL-NRQIKAVYIDPPYNTDAGPIAYK------NGYR--------S 553
Query: 79 EAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML-QNLNFWILNDIVWRKSNPM 137
++ A L A ++ +G L + + +L Q L + + NP
Sbjct: 554 SSWCALIADRLAATPPLMSIDGVLCATIDDYQQRELSYLLEQQFGQDSLLGTIAIRINPS 613
Query: 138 PNFRGRRFQNAHETLIWA 155
AHE I+A
Sbjct: 614 GRPVPSGLAQAHEYAIFA 631
>gi|259047460|ref|ZP_05737861.1| methylase [Granulicatella adiacens ATCC 49175]
gi|259035651|gb|EEW36906.1| methylase [Granulicatella adiacens ATCC 49175]
Length = 191
Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SF 248
G RL+ G+ PT ++ G ++LD + GSG A
Sbjct: 8 FGGRRLKAVPGQNTRPTTDKIKESLFNILGGYFDGGVMLDMYSGSGAVAIEAVSRGMDRA 67
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGK 282
E + + I + L K
Sbjct: 68 FLFENNRLAQKTIEQNIEITKSPEQFHLKRQNVK 101
>gi|20807438|ref|NP_622609.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
tengcongensis MB4]
gi|38605369|sp|Q8RB66|PRMA_THETN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|20515962|gb|AAM24213.1| Ribosomal protein L11 methylase [Thermoanaerobacter tengcongensis
MB4]
Length = 309
Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 31/257 (12%)
Query: 49 YNLQLNGQLYR-PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS 107
Y+L G + + P+ A T WD F + ++ ++ + T V
Sbjct: 23 YDLGAGGVVIKNPNDVKELAQTSEWDYFDP--SLLEEGEEVKISAYFLITTDITDKVNFL 80
Query: 108 YHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFN 167
I+ + + N+ + + + +++ K
Sbjct: 81 KERIWELKSFGINVGNVKVEVSEVDEEDWADSWKKYYKPL---------KVGKRIVVRPL 131
Query: 168 YDALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDII 227
++ ++ + D + +G+ H T K + + L KPG I+
Sbjct: 132 WEEYSPKEGEIVIDLDPGMAFGTGT-----------HETTK---MCLQFLEDIVKPGAIV 177
Query: 228 LDPFFGSGTSGAVAKKLRRSF-IGIEMKQDYIDIATKRIASVQPLGNIELTVLT---GKR 283
D GSG A KL S+ G ++ + + IA + + + L N+E+ R
Sbjct: 178 FDVGCGSGILSIAASKLGASYVYGADVDEMAVKIARENVK-LNGLENVEIFQSDLLKNFR 236
Query: 284 TEPRVAFNLLVERGLIQ 300
+ V ++ +I+
Sbjct: 237 GKADVIVANIIADAIIR 253
>gi|226330661|ref|ZP_03806179.1| hypothetical protein PROPEN_04581 [Proteus penneri ATCC 35198]
gi|225201456|gb|EEG83810.1| hypothetical protein PROPEN_04581 [Proteus penneri ATCC 35198]
Length = 268
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 22/136 (16%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N + + ++++ + + L + + D+IF DPP +
Sbjct: 147 NGLSGRQHRLMQADCLQWLMQ-SNEQFDVIFIDPP---------------TFSNSKRMEN 190
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
F + +R+L+ GT+ + L + + + +K
Sbjct: 191 TFDVQRDHIELM----KHLKRLLRKGGTIMFSNNKRGFKMEHEELAKIG--LRAKEITQK 244
Query: 134 SNPMPNFRGRRFQNAH 149
+ R R+ N
Sbjct: 245 TLSQDFARNRQIHNCW 260
>gi|75908802|ref|YP_323098.1| ParB family protein [Anabaena variabilis ATCC 29413]
gi|75702527|gb|ABA22203.1| ParB family protein [Anabaena variabilis ATCC 29413]
Length = 447
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
E +++ ++ T P ++ PF G G +++ R + + + R
Sbjct: 371 EGIVNYLINLYTSPNHFVIAPFMGHGEILVTCERMGRICFIGDSNAELVGRGIGRWQKWT 430
Query: 270 PLGNIELTVLTGKRTE 285
I+ K +
Sbjct: 431 SKKAIKSVTSETKIKK 446
>gi|17228862|ref|NP_485410.1| hypothetical protein all1367 [Nostoc sp. PCC 7120]
gi|17130714|dbj|BAB73324.1| all1367 [Nostoc sp. PCC 7120]
Length = 184
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
N+ +W +I++G+ + L+ L + D I+ DPPY L
Sbjct: 87 NNEQQW--RILRGDVVQQLKNLSGQQFDRIYFDPPYASGL 124
>gi|327311587|ref|YP_004338484.1| putative DNA methylase [Thermoproteus uzoniensis 768-20]
gi|326948066|gb|AEA13172.1| putative DNA methylase [Thermoproteus uzoniensis 768-20]
Length = 1000
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
S K K++ ++ L +L + DLI DPPY
Sbjct: 569 SSDNSKAKVLLDDASE-LYRLGGEKFDLIVTDPPY 602
>gi|251811837|ref|ZP_04826310.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus epidermidis BCM-HMP0060]
gi|282875125|ref|ZP_06283998.1| D12 class N6 adenine-specific DNA methyltransferase [Staphylococcus
epidermidis SK135]
gi|251804634|gb|EES57291.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus epidermidis BCM-HMP0060]
gi|281295890|gb|EFA88411.1| D12 class N6 adenine-specific DNA methyltransferase [Staphylococcus
epidermidis SK135]
Length = 334
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYR 59
+ + N N+N++ + + K + +DLI+ DPPY Q +
Sbjct: 188 IDEYNDSVFTNNKNNLSTQMNI------KDAIVKYKDE-IDLIYLDPPYPGTMNKYQEFY 240
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRV 95
+ +D ++++ + + + CR+
Sbjct: 241 GVFDQIFNKEIEFDDLTNYKTFLSKFEQIIKLCRKC 276
>gi|295836497|ref|ZP_06823430.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces sp. SPB74]
gi|197699009|gb|EDY45942.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Streptomyces sp. SPB74]
Length = 281
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+ +G++ + L +L VDL+ ++PPY
Sbjct: 162 LHQGDAFAALPEL-DGQVDLVISNPPY 187
>gi|189424829|ref|YP_001952006.1| methyltransferase [Geobacter lovleyi SZ]
gi|189421088|gb|ACD95486.1| methyltransferase [Geobacter lovleyi SZ]
Length = 189
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 27 NSISVLEKLPAKSV--DLIFADPPY 49
+ + LE+L + V DLI DPPY
Sbjct: 101 DCLQALERLVRQKVCFDLILLDPPY 125
>gi|262279688|ref|ZP_06057473.1| RNA methylase family UPF0020 family protein [Acinetobacter
calcoaceticus RUH2202]
gi|262260039|gb|EEY78772.1| RNA methylase family UPF0020 family protein [Acinetobacter
calcoaceticus RUH2202]
Length = 736
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 20/153 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + L++ + DLIF DPP +
Sbjct: 604 SKENFVLNGLTVDHADEQHMFFASDCFEWLKE-GHEQYDLIFIDPP---------TFSNS 653
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S + L GTL+ +Y +
Sbjct: 654 KKFYGTFDVQRDHISL----------IKRAMNRLHSEGTLYFSNNYRGFEMDEEIEAIFQ 703
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ R ++ H L
Sbjct: 704 VEEITSETIGLDFKRNQKIHRAWKIQHPALDQY 736
>gi|118431030|ref|NP_147212.2| hypothetical protein APE_0416.1 [Aeropyrum pernix K1]
gi|116062357|dbj|BAA79372.2| conserved hypothetical protein [Aeropyrum pernix K1]
Length = 1004
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+++ ++ +VL KL + D+I DPPY
Sbjct: 554 RVLLDDA-TVLSKLEGERFDVIVTDPPY 580
>gi|307210239|gb|EFN86889.1| THUMP domain-containing protein 3 [Harpegnathos saltator]
Length = 413
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 218 VSSTKPGDIILDPFFGSGTSGA-VAKKLRRSFIGI-EMKQDYIDIATKRIASVQPLGNIE 275
+++ KPGDI++DP GSG+ A I + ++ I + I
Sbjct: 265 LANPKPGDIVIDPMCGSGSIPIEAALAFSHLCILCGDKNSKAVERTKSNIDGSETAARIL 324
Query: 276 LTVLTGKRTEP-RVAFNLLVERG 297
+GK++ R+ L+E G
Sbjct: 325 FGKRSGKKSNNERLYKQFLLELG 347
>gi|217420963|ref|ZP_03452468.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
576]
gi|254199088|ref|ZP_04905503.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
S13]
gi|169656918|gb|EDS88315.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
S13]
gi|217396375|gb|EEC36392.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
576]
Length = 300
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK GI++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGHVTGIDIDPQAV 201
Query: 259 DIATKR 264
+ A
Sbjct: 202 EAARHN 207
>gi|33594351|ref|NP_881995.1| hypothetical protein BP3472 [Bordetella pertussis Tohama I]
gi|33595533|ref|NP_883176.1| hypothetical protein BPP0848 [Bordetella parapertussis 12822]
gi|33599931|ref|NP_887491.1| hypothetical protein BB0942 [Bordetella bronchiseptica RB50]
gi|33564426|emb|CAE43735.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|33565611|emb|CAE40257.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33567528|emb|CAE31441.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|332383762|gb|AEE68609.1| hypothetical protein BPTD_3424 [Bordetella pertussis CS]
Length = 206
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
+I G+++ V+E++ A DL+ DPP+
Sbjct: 107 RIHAGDAMQVIERMDASRFDLVLLDPPFGQG 137
>gi|256810236|ref|YP_003127605.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
gi|256793436|gb|ACV24105.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
Length = 383
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 14 NSIFEWKDKIIKGNSISVLEK-LPA-KSVDLIFADPPYNLQLNGQLY 58
N+I + K + I+GN+ V+++ + + D++ DPP Q +
Sbjct: 254 NNIPKDKYEFIEGNAFEVMKEFIEDGEKFDVVVLDPPAFTQTEEDIK 300
>gi|254509231|ref|ZP_05121327.1| Putative RNA methylase family UPF0020 [Vibrio parahaemolyticus 16]
gi|219547853|gb|EED24882.1| Putative RNA methylase family UPF0020 [Vibrio parahaemolyticus 16]
Length = 707
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + + + L + DLIF DPP R + S F
Sbjct: 595 HRYEQADCLQWLAN-STEKFDLIFIDPP----TFSNSKRMEQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + + L L N + ++ P+
Sbjct: 639 HIQLM----KDLKRLLRAGGTIVFSNNKRHFKMDLDALNELGLEAKN--ISNQTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|242279878|ref|YP_002992007.1| methyltransferase [Desulfovibrio salexigens DSM 2638]
gi|242122772|gb|ACS80468.1| methyltransferase [Desulfovibrio salexigens DSM 2638]
Length = 186
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYN 50
K+ K + VL K P K DLIF DPPY
Sbjct: 98 KVFKTDLFKVLGKAPDKPYDLIFIDPPYG 126
>gi|87121293|ref|ZP_01077183.1| hypothetical protein MED121_23289 [Marinomonas sp. MED121]
gi|86163450|gb|EAQ64725.1| hypothetical protein MED121_23289 [Marinomonas sp. MED121]
Length = 744
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 20/136 (14%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWD 73
N E K+++ + L+ DLIF DPP + ++ V D
Sbjct: 610 NEFSERDHKVVRADCFEWLKN-SEDMFDLIFMDPP---------TFSNSKKMENVLDIQR 659
Query: 74 KFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRK 133
L L+ +G L +Y ++L +
Sbjct: 660 DHVDL----------LTLAMARLEEDGELIFSNNYRRFTLDQSILDTFEVENITKASLDL 709
Query: 134 SNPMPNFRGRRFQNAH 149
+ + + H
Sbjct: 710 DFERNSKIHQCWIIKH 725
>gi|45359164|ref|NP_988721.1| putative RNA methylase [Methanococcus maripaludis S2]
gi|45048039|emb|CAF31157.1| Putative RNA methylase [Methanococcus maripaludis S2]
Length = 260
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 28/146 (19%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQ 269
++ + +S KPGDI+ D GSG +A K + +E+ + + I
Sbjct: 21 VSVFKEAVETSVKPGDIVFDLGTGSGILAMIAAKNAKHVYAVELDPITTEYTRENIKENN 80
Query: 270 PLGNIELTVLTGK--------------------RTEPRVAFNLLVERGLIQPG-----QI 304
+ N ++E+GL++ G +
Sbjct: 81 YDNITVIEDDAAYYPFSEKADVVIAELLDTGLITEPQVPVLNSIIEKGLLKEGGLIIPEE 140
Query: 305 LTNAQGNISATVCADGTLISGTELGS 330
+ N+ + + + G + E+ S
Sbjct: 141 VYNSAQLVKSKM---GHIYYDEEVTS 163
>gi|281423909|ref|ZP_06254822.1| putative methyltransferase [Prevotella oris F0302]
gi|281401997|gb|EFB32828.1| putative methyltransferase [Prevotella oris F0302]
Length = 176
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
+ E KD +I+G+ L+ + D IFADPPY L+
Sbjct: 88 KLKEDKDLLIRGDVFRFLKSC-HQQFDFIFADPPYALK 124
>gi|167618631|ref|ZP_02387262.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
Bt4]
Length = 300
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK + GI++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGNVTGIDIDPQAV 201
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ A + + L P F+++V L P +++ + +++ V
Sbjct: 202 EAARQNSEHNRADVTYGLPDDC-----PAGEFDIVVANILSNPLKLMASM---LTSKVKP 253
Query: 319 DGTL 322
G +
Sbjct: 254 GGRI 257
>gi|15669418|ref|NP_248228.1| hypothetical protein MJ_1233 [Methanocaldococcus jannaschii DSM
2661]
gi|41018416|sp|Q58630|Y1233_METJA RecName: Full=Uncharacterized protein MJ1233
gi|1591865|gb|AAB99243.1| hypothetical protein MJ_1233 [Methanocaldococcus jannaschii DSM
2661]
Length = 288
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
KII G++ V+++ + D++ DPP
Sbjct: 187 KIILGDAYDVIKRFKDEEFDVVIHDPP 213
>gi|77408378|ref|ZP_00785118.1| type II DNA modification methyltransferase, putative [Streptococcus
agalactiae COH1]
gi|77172981|gb|EAO76110.1| type II DNA modification methyltransferase, putative [Streptococcus
agalactiae COH1]
Length = 250
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-F 248
G L+ DG+ PT ++ G +LD F GSG+ A
Sbjct: 79 FGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQA 138
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ +E + + + IA + +L + R
Sbjct: 139 VLVEKDRRAQVVIQENIAMTKSPEQFQLLKIEANRA 174
>gi|319776825|ref|YP_004136476.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma
fermentans M64]
gi|318037900|gb|ADV34099.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Mycoplasma
fermentans M64]
Length = 438
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 1 MSQKNSLAINENQN-SIFEWKDK-IIKGNSISVLEKLPAKSVDLIFADPP 48
+ IN QN + + +G+ + ++ + + +D I DPP
Sbjct: 321 LEIVKEAVINAKQNAKLNNINNTEFYEGDVLKTIDNI-KEKIDTIIIDPP 369
>gi|293608676|ref|ZP_06690979.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829249|gb|EFF87611.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 736
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 20/153 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + L++ + DLIF DPP +
Sbjct: 604 SKENFVLNGLTVDHADEQHMFFASDCFEWLKE-GHEQYDLIFIDPP---------TFSNS 653
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S + L GTL+ +Y +
Sbjct: 654 KKFYGTFDVQRDHVSL----------IKRAMNRLNSEGTLYFSNNYRGFEMDEEIEAIFQ 703
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ R ++ H L
Sbjct: 704 VEEITSETIGPDFKRNQKIHRAWKIQHPGLDQY 736
>gi|240102167|ref|YP_002958475.1| SAM-dependent methyltransferase [Thermococcus gammatolerans EJ3]
gi|239909720|gb|ACS32611.1| SAM-dependent methyltransferase [Thermococcus gammatolerans EJ3]
Length = 281
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+G++ V+++ ++ D+I DPP
Sbjct: 179 QVIQGDAFEVVKRFNDETFDVIIHDPP 205
>gi|300855968|ref|YP_003780952.1| putative regulatory protein [Clostridium ljungdahlii DSM 13528]
gi|300436083|gb|ADK15850.1| putative regulatory protein [Clostridium ljungdahlii DSM 13528]
Length = 547
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 77/240 (32%), Gaps = 21/240 (8%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNS----ISVLEKLPAKSV---DLIFADPPYNLQLNG 55
+KN + E ++ + ++ + II G + + + L SV D + YNL
Sbjct: 150 KKNKYLL-EQKSILEKFNNIIINGENTQQIVEFIAMLTDSSVLIFDCV-----YNLISKS 203
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWL----LACRRVLKPNGTLWVIGSYHNI 111
+++ + D+ KF + + + K G IG
Sbjct: 204 VNSSQHELIIEKIIDNISKFYEVNSNKQIQIDNVYINKHEIKNRDKTLGYFIRIGDNPED 263
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ + + I + +V + N + + T I + +K + N +
Sbjct: 264 KVLRKTINYGCWIISSKMVNNVGDHFNNLKIK----KMVTEIIMNKDNLSKSFFLNIREI 319
Query: 172 KAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPF 231
+ + + + S + + D +K +L + T+ D + F
Sbjct: 320 FQWTDKDKFVGICFHFLYNDSMKNKINDYKKQFYDIILIRILDKNGFLITEKHDNVFVLF 379
>gi|254180592|ref|ZP_04887190.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1655]
gi|184211131|gb|EDU08174.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1655]
Length = 300
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK G+++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 201
Query: 259 DIATKRIASVQPLGNIELTVL 279
+ A + L
Sbjct: 202 EAARHNSERNRADVTYSLPDD 222
>gi|167825880|ref|ZP_02457351.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
9]
gi|167895951|ref|ZP_02483353.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
7894]
gi|167912596|ref|ZP_02499687.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
112]
gi|167920549|ref|ZP_02507640.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
BCC215]
Length = 300
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK G+++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 201
Query: 259 DIATKRIASVQPLGNIELTVL 279
+ A + L
Sbjct: 202 EAARHNSERNRADVTYSLPDD 222
>gi|126453605|ref|YP_001067742.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1106a]
gi|226196830|ref|ZP_03792409.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
Pakistan 9]
gi|242314839|ref|ZP_04813855.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1106b]
gi|126227247|gb|ABN90787.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1106a]
gi|225931090|gb|EEH27098.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
Pakistan 9]
gi|242138078|gb|EES24480.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
1106b]
Length = 302
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK G+++ +
Sbjct: 147 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 203
Query: 259 DIATKRIASVQPLGNIELTVL 279
+ A + L
Sbjct: 204 EAARHNSERNRADVTYSLPDD 224
>gi|330445603|ref|ZP_08309255.1| hypothetical protein PMSV_529 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489794|dbj|GAA03752.1| hypothetical protein PMSV_529 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 414
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 204 HPTQKPEALLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ + P + +IL P D +LD F GSGT+ AK G+++ + +
Sbjct: 58 YYGKFPSVVAGQILEQLPPPSDKHYVLDNFCGSGTTLVEAKLRGIKSFGLDISWLSVLAS 117
Query: 262 TKRIAS 267
++++
Sbjct: 118 NVKVSN 123
>gi|260892044|ref|YP_003238141.1| methyltransferase [Ammonifex degensii KC4]
gi|260864185|gb|ACX51291.1| methyltransferase [Ammonifex degensii KC4]
Length = 189
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 29 ISVLEKLP-----AKSVDLIFADPPYNLQLNGQLY 58
VL LP + DL++ DPPY Q +
Sbjct: 98 RDVLSLLPYLARKKERFDLVYIDPPY--QKGYEKK 130
>gi|170039089|ref|XP_001847378.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167862728|gb|EDS26111.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 489
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ GD++LDPF GSG+ A K +G ++ +
Sbjct: 215 RQGDLVLDPFVGSGSLLVAAAKFGAYVLGSDIDYMTVH 252
>gi|83719303|ref|YP_441708.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
E264]
gi|167580522|ref|ZP_02373396.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
TXDOH]
gi|123537576|sp|Q2SZE1|PRMA_BURTA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|83653128|gb|ABC37191.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
E264]
Length = 300
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK + GI++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGNVTGIDIDPQAV 201
Query: 259 DIATKR 264
+ A +
Sbjct: 202 EAARQN 207
>gi|323705003|ref|ZP_08116579.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535429|gb|EGB25204.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 453
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 212 LLSRILVSSTKPGD-IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
L + L + GD I+ D + G GT K R GIE+ D ++ A + A
Sbjct: 293 LYEKALEYADLKGDEIVFDVYCGIGTISIFFAKHARKVYGIEVIPDAVEDARQNAAINGV 352
Query: 271 LGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGN 311
+ ++P I+ +
Sbjct: 353 NNAEFIAGKAEDIMIELCNKG-------LKPDVIVFDPPRK 386
>gi|124486493|ref|YP_001031109.1| cyclase family protein [Methanocorpusculum labreanum Z]
gi|124364034|gb|ABN07842.1| hypothetical protein Mlab_1681 [Methanocorpusculum labreanum Z]
Length = 366
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 215 RILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
++ +P +I+ DPF GSGT + +G ++ + ++ Q +
Sbjct: 36 YLIDQYAQPDEILFDPFCGSGTVLLEGWAKGYNVMGNDLNYYAYVLTMGKLYPYQTELD 94
>gi|167904337|ref|ZP_02491542.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
NCTC 13177]
Length = 300
Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK G+++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 201
Query: 259 DIATKR 264
+ A
Sbjct: 202 EAARHN 207
>gi|167721287|ref|ZP_02404523.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
DM98]
Length = 300
Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK G+++ +
Sbjct: 145 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 201
Query: 259 DIATKR 264
+ A
Sbjct: 202 EAARHN 207
>gi|40217450|emb|CAE46383.1| methyltransferase [uncultured archaeon]
gi|268323833|emb|CBH37421.1| conserved hypothetical protein [uncultured archaeon]
Length = 455
Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 226 IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVL 279
++LDPF G GT AK + G E+ IA ++ N L V
Sbjct: 92 VVLDPFAGCGTVLVQAKLNGHTSCGTELNPFLQFIANTKLNCWDVFPNYLLRVY 145
>gi|254190971|ref|ZP_04897477.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
Pasteur 52237]
gi|157938645|gb|EDO94315.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
Pasteur 52237]
Length = 302
Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G HPT L L + +PG +LD GSG +AKK G+++ +
Sbjct: 147 GTGSHPT---TRLCMEWLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGVDIDPQAV 203
Query: 259 DIATKR 264
+ A
Sbjct: 204 EAARHN 209
>gi|229592006|ref|YP_002874125.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas fluorescens
SBW25]
gi|229363872|emb|CAY51346.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 762
Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 20/91 (21%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+++ +G+ I+ LE + DLIF DPP F
Sbjct: 652 KNRLEQGDVIAWLEASRDE-FDLIFIDPP---------------TFSNSKRMEGIFDVQR 695
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ L L P G L+ ++
Sbjct: 696 DHVQL----LDLAMARLAPGGVLYFSNNFRK 722
>gi|19173635|ref|NP_597438.1| putative METHYLTRANSFERASE [Encephalitozoon cuniculi GB-M1]
gi|19170841|emb|CAD26615.1| putative METHYLTRANSFERASE [Encephalitozoon cuniculi GB-M1]
Length = 247
Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 195 LRNKDGEKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEM 253
LR ++ QK L R L + K G ++LD GSG SG+V + +IG+++
Sbjct: 20 LRYTQNSRIVYIQK--ELTQRCLELLDAKDGGLVLDVGCGSGLSGSVLSESGYPWIGVDI 77
Query: 254 KQDYIDIATKRIA 266
+ + + +R+
Sbjct: 78 SMEMLKLGMERME 90
>gi|222525127|ref|YP_002569598.1| hypothetical protein Chy400_1865 [Chloroflexus sp. Y-400-fl]
gi|222449006|gb|ACM53272.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
Length = 492
Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 209 PEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
P L+ L +++ D + DPF G+ T+ A+ I + + ++A
Sbjct: 45 PPHLVREYLHRLNADAERDWVFDPFCGTATTPVEARLQGFPTISSDANPVALLATRVKMA 104
Query: 267 SV 268
Sbjct: 105 WD 106
>gi|241661890|ref|YP_002980250.1| methyltransferase [Ralstonia pickettii 12D]
gi|240863917|gb|ACS61578.1| methyltransferase [Ralstonia pickettii 12D]
Length = 218
Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
I+ G++ + L + P + D +F DPP+
Sbjct: 119 IVSGDAFAWLARQPDAAFDAVFIDPPF 145
>gi|42524060|ref|NP_969440.1| adenylate cyclase [Bdellovibrio bacteriovorus HD100]
gi|39576268|emb|CAE80433.1| adenylate cyclase [Bdellovibrio bacteriovorus HD100]
Length = 881
Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PE L + + T DI+ F SGT +F G +K + R A
Sbjct: 643 PEELSRVLNLYLTPMTDIV---FKNSGTLDKYMGDAIMAFFGAPVKDPHHAAHACRCALE 699
Query: 269 QPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTEL 328
+ EL + P + + + G + G + + TV D ++
Sbjct: 700 SLVKLKELQKEFSDKGLPHIDIGIGINTGEMSVG--NMGSNIVQNYTVMGDSVNLASRLE 757
Query: 329 GSIHR-VGAKVSGSETCNGWNFWYFEKLGELHSINTLR 365
G I++ G ++ SE + + ++ I+ +R
Sbjct: 758 G-INKEYGTRIVISE----FTYNDVKEAFTAREIDRVR 790
>gi|71274947|ref|ZP_00651235.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
gi|71901570|ref|ZP_00683652.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
gi|170729774|ref|YP_001775207.1| hypothetical protein Xfasm12_0572 [Xylella fastidiosa M12]
gi|71164679|gb|EAO14393.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
gi|71728656|gb|EAO30805.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
gi|167964567|gb|ACA11577.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 51
Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 230 PFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P GSGT+G A + + FIG+ + Y D+A +R++
Sbjct: 3 PLAGSGTTGVAALRAKHRFIGMALSLVYSDVAKQRLSDR 41
>gi|163847283|ref|YP_001635327.1| hypothetical protein Caur_1721 [Chloroflexus aurantiacus J-10-fl]
gi|163668572|gb|ABY34938.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
Length = 503
Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 209 PEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIA 266
P L+ L +++ D + DPF G+ T+ A+ I + + ++A
Sbjct: 56 PPHLVREYLHRLNADAERDWVFDPFCGTATTPVEARLQGFPTISSDANPVALLATRVKMA 115
Query: 267 SV 268
Sbjct: 116 WD 117
>gi|256810678|ref|YP_003128047.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
gi|256793878|gb|ACV24547.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
Length = 385
Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 3 QKNSLAINENQNSIFEW-KDK--IIKGNSISVLEK-LPA-KSVDLIFADPPYNLQLNGQL 57
K +L E + KDK I+GN+ V+++ + + D++ DPP Q L
Sbjct: 243 SKKALKTAEENMELNNIPKDKYEFIEGNAFEVMKEFIEDGEKFDVVVLDPPAFAQSKKAL 302
Query: 58 Y 58
Sbjct: 303 K 303
>gi|171778247|ref|ZP_02919453.1| hypothetical protein STRINF_00293 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282947|gb|EDT48371.1| hypothetical protein STRINF_00293 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 249
Score = 36.9 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 14 NSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADP 47
N + +++ L+ LP S D+I+ DP
Sbjct: 144 NKAMRSIHTV-CAKNLAYLKTLPDNSYDVIYCDP 176
>gi|325121504|gb|ADY81027.1| putative N-6 adenine-specific DNA methylase [Acinetobacter
calcoaceticus PHEA-2]
Length = 743
Score = 36.9 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 20/153 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + L++ + DLIF DPP +
Sbjct: 611 SKENFVLNGLTVDHADEQHMFFASDCFEWLKE-GHEQYDLIFIDPP---------TFSNS 660
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S + L GTL+ +Y +
Sbjct: 661 KKFYGTFDVQRDHVSL----------IKRAMNRLNSEGTLYFSNNYRGFEMDEEIEAIFQ 710
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWA 155
+ R ++ H L
Sbjct: 711 VEEITSETIGPDFKRNQKIHRAWKIQHPGLDQY 743
>gi|325475432|gb|EGC78613.1| hypothetical protein HMPREF9353_00194 [Treponema denticola F0402]
Length = 236
Score = 36.9 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY-------RPDHSLV 65
+ +I + ++ +++ + S D+++ DPPYN + Y R + V
Sbjct: 79 EPNIDLKDNLCFNSDANELVKNI---SADVVYIDPPYNSRQYSDAYHLVENIARWEKPDV 135
Query: 66 DAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
V D+ S Y + A ++ +++ SY+N+ + G
Sbjct: 136 HGVAKKMDRSSIKSKYCTRSAP--KAFEDLISDIKAKYIVVSYNNMAKKGN 184
>gi|295398772|ref|ZP_06808781.1| RsmD family RNA methyltransferase [Aerococcus viridans ATCC 11563]
gi|294972986|gb|EFG48804.1| RsmD family RNA methyltransferase [Aerococcus viridans ATCC 11563]
Length = 188
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 10/146 (6%)
Query: 190 SGSERLRNKDGEKLHPTQ-KPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR-RS 247
G RL+ G+ PT K + L I+ +LD + GSG G A
Sbjct: 8 FGKHRLKAVPGDNTRPTTDKIKESLFNIIGPYFDEETRVLDFYAGSGALGIEAISRGAAV 67
Query: 248 FIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT------EPRVAFNLLVERGLIQP 301
G E + + +A+V+ L ++ + LV
Sbjct: 68 VYGFEKNRQAQATIKENVAAVRIEDQYVLKAGDNRKAIQQLRQADKDLQFDLVFLDPPYK 127
Query: 302 GQILTNAQGNISAT--VCADGTLISG 325
GQ L + A + D LI
Sbjct: 128 GQQLEDVINGFLADNWLAPDARLICE 153
>gi|261252954|ref|ZP_05945527.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio orientalis
CIP 102891]
gi|260936345|gb|EEX92334.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio orientalis
CIP 102891]
Length = 707
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + + + LEK + DLIF DPP R + S F
Sbjct: 595 HRFEQADCLQWLEK-SSAQFDLIFIDPP----TFSNSKRMEQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + LQ L + + ++ P+
Sbjct: 639 HIQLM----KNLKRLLRPEGTIVFSNNKRHFKMDLESLQELG--LAAKNISSQTLPLDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|261403565|ref|YP_003247789.1| putative RNA methylase [Methanocaldococcus vulcanius M7]
gi|261370558|gb|ACX73307.1| putative RNA methylase [Methanocaldococcus vulcanius M7]
Length = 351
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
++ K DIILDPF G+G A + IG ++ + L
Sbjct: 200 LARVKENDIILDPFCGTGGFLIEAGLIGAKLIGCDIDWRMASGTKINLEEYNLLDK 255
>gi|238809600|dbj|BAH69390.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 441
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 1 MSQKNSLAINENQN-SIFEWKDK-IIKGNSISVLEKLPAKSVDLIFADPP 48
+ IN QN + + +G+ + ++ + + +D I DPP
Sbjct: 324 LEIVKEAVINAKQNAKLNNINNTEFYEGDVLKTIDNI-KEKIDTIIIDPP 372
>gi|58865224|emb|CAI52507.1| DNA-methyltransferase [Geobacillus stearothermophilus]
Length = 346
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 13/166 (7%)
Query: 5 NSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSL 64
L + + +I +++ +S ++ +L D+I+ DPPYN + Y ++
Sbjct: 183 KPLELIKLDVTINHKENRSFNKDSNELIRELEG---DIIYIDPPYNSRQYMPNYHILETI 239
Query: 65 VDAVTDSWDKFSSFEAYDAFTRAWL-----LACRRVLKPNG---TLWVIGSYHNIFRIGT 116
+ + Y F + L N + V S I T
Sbjct: 240 ARYDSPEIYGVTGLRPYKEFKSKYCNKKQVEKAFADLIENANFEHIVVSYSNEGIMSEET 299
Query: 117 MLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAH--ETLIWASPSPK 160
+L+ L + + D V P ++G+ H LI+ + K
Sbjct: 300 ILEILCTYAVADSVKVYKYPYRRYKGKLSAKEHNLHELIFYAKKRK 345
>gi|20806632|ref|NP_621803.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
MB4]
gi|20515079|gb|AAM23407.1| SAM-dependent methyltransferases [Thermoanaerobacter tengcongensis
MB4]
Length = 251
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 24/132 (18%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD-PPY---NLQLNGQLYRPD 61
S+AIN +N I KII G+ V + L + D + PPY + +
Sbjct: 88 SVAINSLENRI-----KIIHGDVREVEKLLGYEKFD-VVTSNPPYMPLYTGFEKKEEAEN 141
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + D A ++LK G +++ + + L+
Sbjct: 142 IARYEVYGGLEDFV--------------KAAFKLLKFGGKFFMVHRPDRLVDVMYFLRKY 187
Query: 122 NFWILNDIVWRK 133
N
Sbjct: 188 NLEPKKLRFVHP 199
>gi|317970453|ref|ZP_07971843.1| N6-adenine-specific methylase [Synechococcus sp. CB0205]
Length = 182
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQL 57
++I+ +I L +S DL++ADPPY L G L
Sbjct: 96 QVIQQEAIRWLGSAQGESFDLVYADPPYAAGLYGAL 131
>gi|110835424|ref|YP_694283.1| hypothetical protein ABO_2563 [Alcanivorax borkumensis SK2]
gi|110648535|emb|CAL18011.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 210
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 28 SISVLEKLPAKS--VDLIFADPPYNLQL 53
L LP + DL+F DPPY+L L
Sbjct: 123 CADALSWLPTQRQPFDLVFIDPPYDLGL 150
>gi|125973524|ref|YP_001037434.1| O-methyltransferase family protein [Clostridium thermocellum ATCC
27405]
gi|281417727|ref|ZP_06248747.1| O-methyltransferase family 3 [Clostridium thermocellum JW20]
gi|125713749|gb|ABN52241.1| O-methyltransferase, family 3 [Clostridium thermocellum ATCC 27405]
gi|281409129|gb|EFB39387.1| O-methyltransferase family 3 [Clostridium thermocellum JW20]
gi|316940236|gb|ADU74270.1| O-methyltransferase family 3 [Clostridium thermocellum DSM 1313]
Length = 212
Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
N + + + + II+G+++ VL+ L D+IF D
Sbjct: 97 NVKKAGLQDVIN-IIEGDALEVLKCL-EHKYDMIFLD 131
>gi|126465482|ref|YP_001040591.1| DNA methylase [Staphylothermus marinus F1]
gi|126014305|gb|ABN69683.1| putative DNA methylase [Staphylothermus marinus F1]
Length = 1005
Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY 49
++EN +++ K++ ++ ++L KL + D+I DPPY
Sbjct: 508 IVSENSSNV-----KVMLDDA-TMLRKLSNEKFDIIVTDPPY 543
>gi|302875155|ref|YP_003843788.1| hypothetical protein Clocel_2298 [Clostridium cellulovorans 743B]
gi|23451702|gb|AAN32824.1|AF435978_1 hypothetical protein [Clostridium cellulovorans]
gi|302578012|gb|ADL52024.1| hypothetical protein Clocel_2298 [Clostridium cellulovorans 743B]
Length = 757
Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 5 NSLAINENQNSIFEWKDKIIK-GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
N +++ + + + + + I + G+ ++ DLI DPPY + + +
Sbjct: 605 NKYSLSTHISENYNY-NPIFQVGDCRKCIDSYSNMKYDLIITDPPYGFNTDEDIIYMSNL 663
Query: 64 LVDAVTDSWDK 74
D + +K
Sbjct: 664 YKDIIKRMIEK 674
>gi|330817583|ref|YP_004361288.1| hypothetical protein bgla_1g27140 [Burkholderia gladioli BSR3]
gi|327369976|gb|AEA61332.1| hypothetical protein bgla_1g27140 [Burkholderia gladioli BSR3]
Length = 471
Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 195 LRNKDGEKLHPTQKPEAL----LSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSF 248
L+ D + H P L +ST G++ +LDPF GSGT
Sbjct: 56 LKMGDQQTHHMHPYPGKLLPHIAHFFCGASTLGGEVPTVLDPFCGSGTVALEGALAGWQP 115
Query: 249 IGIEMKQDYIDIAT-----KRIASVQPLGNIELTVLTGKRTEPRVAFNLLV 294
+ + + I R+++++ + + RT P V V
Sbjct: 116 LVADANPLALLITKVKTKAYRVSALRTAMSDLMARARRYRTGPVVPIVNDV 166
>gi|307690205|ref|ZP_07632651.1| hypothetical protein Ccel74_18751 [Clostridium cellulovorans 743B]
Length = 755
Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 5 NSLAINENQNSIFEWKDKIIK-GNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHS 63
N +++ + + + + + I + G+ ++ DLI DPPY + + +
Sbjct: 603 NKYSLSTHISENYNY-NPIFQVGDCRKCIDSYSNMKYDLIITDPPYGFNTDEDIIYMSNL 661
Query: 64 LVDAVTDSWDK 74
D + +K
Sbjct: 662 YKDIIKRMIEK 672
>gi|256811132|ref|YP_003128501.1| Methyltransferase type 11 [Methanocaldococcus fervens AG86]
gi|256794332|gb|ACV25001.1| Methyltransferase type 11 [Methanocaldococcus fervens AG86]
Length = 279
Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPP 48
IN +F+ KII G++ V++ + D++ DPP
Sbjct: 164 KINPYSEDLFKGNIKIILGDAFDVIKNFKDEEFDVVIHDPP 204
>gi|254479291|ref|ZP_05092632.1| Methyltransferase small domain superfamily protein
[Carboxydibrachium pacificum DSM 12653]
gi|214034766|gb|EEB75499.1| Methyltransferase small domain superfamily protein
[Carboxydibrachium pacificum DSM 12653]
Length = 241
Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 24/132 (18%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD-PPY---NLQLNGQLYRPD 61
S+AIN +N I KII G+ V + L + D + PPY + +
Sbjct: 78 SVAINSLENRI-----KIIHGDVREVEKLLGYEKFD-VVTSNPPYMPLYTGFEKKEEAEN 131
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + D A ++LK G +++ + + L+
Sbjct: 132 IARYEVYGGLEDFV--------------KAAFKLLKFGGKFFMVHRPDRLVDVMYFLRKY 177
Query: 122 NFWILNDIVWRK 133
N
Sbjct: 178 NLEPKKLRFVHP 189
>gi|94967906|ref|YP_589954.1| hypothetical protein Acid345_0877 [Candidatus Koribacter versatilis
Ellin345]
gi|94549956|gb|ABF39880.1| conserved hypothetical protein [Candidatus Koribacter versatilis
Ellin345]
Length = 271
Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
A++ R + + +PGD +LD G+G K + +G + + +++A ++ +
Sbjct: 36 AVVWREIDRTFQPGDTVLDLNCGTGEDALYLVKRGINVVGCDASRRMVEVAQNKLRGITN 95
Query: 271 LGNIELTVLTGK 282
E VL +
Sbjct: 96 PARGEFHVLANE 107
>gi|308189665|ref|YP_003922596.1| RNA methyltransferase protein [Mycoplasma fermentans JER]
gi|307624407|gb|ADN68712.1| RNA methyltransferase protein [Mycoplasma fermentans JER]
Length = 438
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 1 MSQKNSLAINENQNSIFEWKDKI--IKGNSISVLEKLPAKSVDLIFADPP 48
+ IN QN+ + + +G+ + ++ + + +D I DPP
Sbjct: 321 LEIVKEAVINAKQNAKLNNINNVEFYEGDVLKTIDNI-KEKIDTIIIDPP 369
>gi|170290320|ref|YP_001737136.1| adenine-specific DNA methylase [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170174400|gb|ACB07453.1| Adenine-specific DNA methylase containing a Zn-ribbon [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 972
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 22 KIIKGNSISVLEKL-PAKSVDLIFADPPY 49
K++ ++ ++L KL + DLI DPPY
Sbjct: 519 KVLLDDA-TILNKLNSEEKFDLIVTDPPY 546
>gi|150392237|ref|YP_001322286.1| putative RNA methylase [Alkaliphilus metalliredigens QYMF]
gi|149952099|gb|ABR50627.1| putative RNA methylase [Alkaliphilus metalliredigens QYMF]
Length = 379
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 5/167 (2%)
Query: 85 TRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRR 144
T WL RVL G + ++ +F L + + I + +
Sbjct: 50 TNLWLRTADRVLIKIG-QFKATTFDELFEKTKALPWHEWIPKDGIFPVDGKSIKSQLASV 108
Query: 145 FQNAHETLIWASPSPKAKGYTFNYDAL---KAANEDVQMRSDWLIPICSGSERLRNKDGE 201
K+K +T ++ + L +G+ + +
Sbjct: 109 PNCQSIVKKAVVEKLKSKYHTEWFEETKGTYRIEVGILKDVVTLTMDTTGAGLHKRGYRK 168
Query: 202 KLHPTQKPEALLSRILVSSTKPGDIIL-DPFFGSGTSGAVAKKLRRS 247
+ E L + ++ S D +L DPF GSGT A + R+
Sbjct: 169 LANQAPLKETLAAALIQLSFWNPDRVLIDPFCGSGTIPIEAALIGRN 215
>gi|310659144|ref|YP_003936865.1| methyltransferase [Clostridium sticklandii DSM 519]
gi|308825922|emb|CBH21960.1| putative methyltransferase [Clostridium sticklandii]
Length = 188
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 22 KIIKGNSISVLEKLPAKSVDL--IFADPPYN 50
KI+K ++ L L K + L IF DPPY
Sbjct: 95 KILKADAFEALNSLANKGIKLDYIFMDPPYG 125
>gi|241889125|ref|ZP_04776429.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379]
gi|241864374|gb|EER68752.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379]
Length = 256
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 13 QNSIFEWKDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTD 70
I + KII + I L+K P + D+I+ DP ++ D + + ++
Sbjct: 141 NEEINKAMRKIITHNFDCIDYLKKTPDNAFDIIYFDP---------MFSHDIAESNNLSG 191
Query: 71 SWDKFSSFEAYDAFTRAWLLACR 93
S YD F + R
Sbjct: 192 ITPLADSHFKYDEFIKEAYRVAR 214
>gi|304314695|ref|YP_003849842.1| adenine-specific DNA methylase [Methanothermobacter marburgensis
str. Marburg]
gi|302588154|gb|ADL58529.1| predicted adenine-specific DNA methylase [Methanothermobacter
marburgensis str. Marburg]
Length = 886
Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 35/138 (25%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLP--AKSVDLIFADPPY--NLQLNG-------Q 56
+N+N+N+ K+++G++ LP + D +F DPPY N+ +
Sbjct: 475 KLNKNENTP-----KVVQGSAT----SLPFDDEYFDAVFTDPPYYDNVPYSYLSDFFYVW 525
Query: 57 LYR---------------PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGT 101
L R P + A T+ + E +++ R RVL+P G
Sbjct: 526 LKRAIGDLYPDLFITPLTPKRGEMVAYTNDKSMDEASEEFESMLRDSFREIHRVLRPGGI 585
Query: 102 LWVIGSYHNIFRIGTMLQ 119
++ ++ T++
Sbjct: 586 ANIVYAHKTTHGWETVIN 603
>gi|150399663|ref|YP_001323430.1| methyltransferase small [Methanococcus vannielii SB]
gi|150012366|gb|ABR54818.1| methyltransferase small [Methanococcus vannielii SB]
Length = 260
Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 210 EALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI---A 266
++ + +S K GD + D GSG VA K + +E+ + + I
Sbjct: 21 VSVFKEAIETSVKKGDTVFDLGTGSGILAMVAAKDAKKVYAVELDPITTEYTKRNITTNN 80
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVERGLI 299
+ + + + L++ GLI
Sbjct: 81 FENIIVIESDATYYPFKEKADLVIAELLDTGLI 113
>gi|116694188|ref|YP_728399.1| methyl-accepting chemotaxis protein [Ralstonia eutropha H16]
gi|113528687|emb|CAJ95034.1| Methyl-accepting chemotaxis protein [Ralstonia eutropha H16]
Length = 619
Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 16 IFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
+ +W KI G+ + L+ + +++L++A
Sbjct: 38 MADWTGKIYNGD-LQALKAVQDANINLVYAS 67
>gi|50121459|ref|YP_050626.1| 23S rRNA m(2)G2445 methyltransferase [Pectobacterium atrosepticum
SCRI1043]
gi|81827096|sp|Q6D459|RLML_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|49611985|emb|CAG75434.1| putative RNA methylase [Pectobacterium atrosepticum SCRI1043]
Length = 705
Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 579 NLRVNGLTGRQHRLIQADCLSWLHN-GHEQFDVIFIDPP---------------TFSNSK 622
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + A +R+L+ GT+ +
Sbjct: 623 RMEESFDVQRDHLALM----KDLKRLLRRGGTIMFSNNKR 658
>gi|145501733|ref|XP_001436847.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403991|emb|CAK69450.1| unnamed protein product [Paramecium tetraurelia]
Length = 414
Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 209 PEALLSRI-----LVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMK 254
P +L + + + D + DPF G+G+S G E+
Sbjct: 208 PVSLAHDLAFLMANQAIVQENDFVFDPFAGTGSSLVACSHFGAICFGSEID 258
>gi|281420519|ref|ZP_06251518.1| site-specific DNA-methyltransferase [Prevotella copri DSM 18205]
gi|281405292|gb|EFB35972.1| site-specific DNA-methyltransferase [Prevotella copri DSM 18205]
Length = 435
Score = 36.9 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPY 49
++G+ + L +LP +V ++ADPPY
Sbjct: 270 MQGDYLECLRRLP-NTVKTVYADPPY 294
>gi|218283085|ref|ZP_03489180.1| hypothetical protein EUBIFOR_01766 [Eubacterium biforme DSM 3989]
gi|218216154|gb|EEC89692.1| hypothetical protein EUBIFOR_01766 [Eubacterium biforme DSM 3989]
Length = 183
Score = 36.9 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 13 QNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP----DHSLVDAV 68
+N + + KII GN +VLE+L D+++ DPPY Q N +L + D +D V
Sbjct: 85 KNLKADKETKIICGNIFTVLERL-TLKYDVVYIDPPYAKQENEKLIQKLDDLDMVKLDGV 143
>gi|306830749|ref|ZP_07463913.1| RsmD family RNA methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325977670|ref|YP_004287386.1| methyltransferase [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|304427096|gb|EFM30204.1| RsmD family RNA methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325177598|emb|CBZ47642.1| methyltransferase, putative [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 182
Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 190 SGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRS-F 248
G L+ DG+ PT ++ G +LD F GSG+ A
Sbjct: 11 FGGRPLKTLDGKITRPTTDKVKGAIFNMIGPFFDGGRVLDLFSGSGSLAIEAISRGMDEA 70
Query: 249 IGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRT 284
+ +E + I + I + L + +
Sbjct: 71 VLVERNRQAQAIILENIKMTKSEQQFHLLKMDANKA 106
>gi|262402170|ref|ZP_06078731.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio sp. RC586]
gi|262350952|gb|EEZ00085.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio sp. RC586]
Length = 707
Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ + + L DLIF DPP R + + F
Sbjct: 595 HQYIQADCLQWLAN-AQGQYDLIFIDPP----TFSNSKRMEQT-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + LQ L + ++ PM
Sbjct: 639 HVTLMTN----LKRMLRPEGTIVFSNNKRHFKMDLEALQALELN--AQNISHQTLPMDFE 692
Query: 141 RGRRFQNAH 149
R ++ N
Sbjct: 693 RNKQIHNCW 701
>gi|307945372|ref|ZP_07660708.1| hypothetical protein TRICHSKD4_4062 [Roseibium sp. TrichSKD4]
gi|307771245|gb|EFO30470.1| hypothetical protein TRICHSKD4_4062 [Roseibium sp. TrichSKD4]
Length = 199
Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 19/170 (11%)
Query: 210 EALLSRILVSSTK--PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
E + ++++ G + + GAV KK + ++ +Y + +
Sbjct: 33 EQIWKWLILALHSALQGACVCHLTTTAQPIGAVTKKNEKKWL------EYFEASRVNEKI 86
Query: 268 VQPLG-NIELTVLTGKRTEPRVAFNLL------VERGLIQPGQILTNAQGNISATVCADG 320
P + L L K +P + + L + N G
Sbjct: 87 DPPQTYLMSLPDLLKKIRKPNSCGGSTYPNEITLSDHELSRLTKLHDEIRNQFVHFSPTG 146
Query: 321 TLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLGELHSINTLRILVRK 370
I + I ++ A++ GW F + + + LR + K
Sbjct: 147 WAIEISGTLEIAKLVARIVNDILQAGWGFRHLSEDQKA----ELRQNLEK 192
>gi|269128127|ref|YP_003301497.1| modification methylase, HemK family [Thermomonospora curvata DSM
43183]
gi|268313085|gb|ACY99459.1| modification methylase, HemK family [Thermomonospora curvata DSM
43183]
Length = 286
Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
++ + L++L +VDL+ ++PPY + P+ D W
Sbjct: 165 RLHLADFADALQEL-NGTVDLVISNPPYIPMSEWEYVPPEVRDHDPAAALWGGGDDG--- 220
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFW 124
R RR+L+P G + V S + + + W
Sbjct: 221 LDAIRTVERTARRLLRPGGHVAVEHSDMQGNAVYWVFAEEHGW 263
>gi|254302819|ref|ZP_04970177.1| polypeptide chain release factor methyltransferase HemK
[Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
gi|148323011|gb|EDK88261.1| polypeptide chain release factor methyltransferase HemK
[Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
Length = 383
Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 10/128 (7%)
Query: 2 SQKNSLAINENQ---NSIFEWKDKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNG 55
S + INE + + +KI N I + EKL DLI ++PPY +
Sbjct: 220 SSVTGIDINEKALKLANENKILNKIENVNFIESNLFEKLDKDFKYDLIVSNPPYISKEEY 279
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
++ P+ + D F R LK G L Y+ +
Sbjct: 280 EILMPEVKNYEPQNALTDLGDG----LYFYREISKLAGEYLKDTGYLAYEIGYNQAKDVS 335
Query: 116 TMLQNLNF 123
+LQ+ NF
Sbjct: 336 KILQDNNF 343
>gi|302670355|ref|YP_003830315.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
gi|302394828|gb|ADL33733.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
Length = 470
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 11 ENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPP 48
+ + + + I G+ + VL+++ K D+I DPP
Sbjct: 360 KENAKLNNLDNCEFIAGDVLKVLDEIEDKP-DMIILDPP 397
>gi|296109231|ref|YP_003616180.1| putative RNA methylase [Methanocaldococcus infernus ME]
gi|295434045|gb|ADG13216.1| putative RNA methylase [Methanocaldococcus infernus ME]
Length = 341
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 201 EKLHPTQKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQ 255
+ HP L ++ ++ K DI+LDPF G+G A L IG ++
Sbjct: 173 KYFHPGCIMPKLARAMVNLARVKENDIVLDPFCGTGGFLIEAGLLGAKLIGCDIDW 228
Score = 36.2 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 30 SVLEKLPAKSVDLIFADPPYNLQLNGQ 56
L +L VD I DPPY + +
Sbjct: 260 DFLRELNIDKVDAIVTDPPYGISTAKK 286
>gi|74136129|ref|NP_001027923.1| hypothetical protein LOC445946 [Takifugu rubripes]
gi|33329803|gb|AAQ10287.1| putative RNA methylase [Takifugu rubripes]
Length = 466
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ K D + DPF G+G+ + G ++ + I
Sbjct: 212 HAKVKKNDFVFDPFVGTGSLLIACSQFGAYVCGADIDYNTIH 253
>gi|32035090|ref|ZP_00135149.1| COG0863: DNA modification methylase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 100
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
KII G++ E + VD+IF DPP+
Sbjct: 3 KIIYGDA----ESIHLDKVDMIFTDPPF 26
>gi|282899358|ref|ZP_06307326.1| Putative methyltransferase [Cylindrospermopsis raciborskii CS-505]
gi|281195725|gb|EFA70654.1| Putative methyltransferase [Cylindrospermopsis raciborskii CS-505]
Length = 200
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
I++G+ + L+KL ++ D I+ DPPY
Sbjct: 94 ILRGDVLQQLKKLSGQTFDRIYFDPPY 120
>gi|261821344|ref|YP_003259450.1| 23S rRNA m(2)G2445 methyltransferase [Pectobacterium wasabiae
WPP163]
gi|261605357|gb|ACX87843.1| putative RNA methylase [Pectobacterium wasabiae WPP163]
Length = 705
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 10 NENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVT 69
N N + + ++I+ + +S L + D+IF DPP
Sbjct: 579 NLRVNGLTGRQHRLIQADCLSWLHN-GHEQFDVIFIDPP---------------TFSNSK 622
Query: 70 DSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+ F + A +R+L+ GT+ +
Sbjct: 623 RMEESFDVQRDHLALMTD----LKRLLRRGGTIMFSNNKR 658
>gi|221195557|ref|ZP_03568612.1| methyltransferase [Atopobium rimae ATCC 49626]
gi|221184744|gb|EEE17136.1| methyltransferase [Atopobium rimae ATCC 49626]
Length = 195
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
P +S +L+ DPP+ + G SL + C R
Sbjct: 76 FPDESFNLVIFDPPHLIGKRGWRSDYYGSL------------DSHTWREDLAKGFRECLR 123
Query: 95 VLKPNGT 101
VLKP G
Sbjct: 124 VLKPYGV 130
>gi|212637492|ref|YP_002314017.1| N6-adenine-specific methylase [Shewanella piezotolerans WP3]
gi|212558976|gb|ACJ31430.1| N6-adenine-specific methylase [Shewanella piezotolerans WP3]
Length = 201
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPY 49
+IKG+S+ +L P K D++F DPP+
Sbjct: 104 VIKGDSLKLLANSPEKGFDIVFVDPPF 130
>gi|156740960|ref|YP_001431089.1| hypothetical protein Rcas_0958 [Roseiflexus castenholzii DSM 13941]
gi|156232288|gb|ABU57071.1| hypothetical protein Rcas_0958 [Roseiflexus castenholzii DSM 13941]
Length = 408
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 212 LLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
L+ +L T ++LDPF G+GT+ + ++ + +
Sbjct: 34 LVQDVLSQITPHDTVVLDPFCGTGTTALACAERGIPVDTTDINPFLLWLT 83
>gi|83409928|emb|CAI64349.1| putative RNA methylase [uncultured archaeon]
Length = 359
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 34 KLPAKSVDLIFADPPYN 50
L +D + DPPY
Sbjct: 270 ALKDSCIDCVVTDPPYG 286
>gi|10798462|emb|CAC12782.1| DNA methyltransferase C2 [Bacillus firmus]
Length = 504
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 222 KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
++DPF GSGT+ + IG+++ + IA
Sbjct: 120 NENSNVIDPFSGSGTTLLECSLQNINAIGLDINPLAVFIAN 160
>gi|330995352|ref|ZP_08319262.1| D12 class N6 adenine-specific DNA methyltransferase [Paraprevotella
xylaniphila YIT 11841]
gi|329575847|gb|EGG57371.1| D12 class N6 adenine-specific DNA methyltransferase [Paraprevotella
xylaniphila YIT 11841]
Length = 351
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPY-NLQLNGQLYR 59
+ + N+ + + ++ K+ + +L KL VDL++ DPPY N + Q +
Sbjct: 192 LPEYNAAVFDNAKENVSYNKNI------LDLLPKLKN--VDLVYFDPPYCNSHADYQSFY 243
>gi|57641980|ref|YP_184458.1| SAM-dependent methyltransferase [Thermococcus kodakarensis KOD1]
gi|57160304|dbj|BAD86234.1| SAM-dependent methyltransferase, UPF0020 family [Thermococcus
kodakarensis KOD1]
Length = 290
Score = 36.9 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
++I+G++ V++K S D+I DPP
Sbjct: 181 QVIQGDAFEVVKKFKQASFDVIIHDPP 207
>gi|117927850|ref|YP_872401.1| HemK family modification methylase [Acidothermus cellulolyticus
11B]
gi|117648313|gb|ABK52415.1| modification methylase, HemK family [Acidothermus cellulolyticus
11B]
Length = 294
Score = 36.9 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYD 82
++ ++ L +L VDL+ A+PPY + + QL P+ D W S
Sbjct: 179 VLCADAAVALPEL-DGQVDLVVANPPYLAEGDRQLLEPEVRDHDPPRALW----SDADGL 233
Query: 83 AFTRAWLLACRRVLKPNGTLWV 104
A + A RR+L+P G + V
Sbjct: 234 AGPAMIVEAARRLLRPGGRVAV 255
>gi|19074139|ref|NP_584745.1| similarity to HYPOTHETICAL PROTEINS Y883_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19068781|emb|CAD25249.1| similarity to HYPOTHETICAL PROTEINS Y883_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 360
Score = 36.9 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 1/102 (0%)
Query: 214 SRILVSSTKP-GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
R +++ G+++ DPF G G A K ++ I+ K I +
Sbjct: 196 ERAILAGKFKAGEVLCDPFCGVGPVSLPALKKGCRVYSNDLNLRAIECLEKSIKINRLDP 255
Query: 273 NIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISA 314
++ + + + ISA
Sbjct: 256 RNIEIFNLSANEFLEKMAGRKIDHFFLNLPEHSLDYLRRISA 297
>gi|297620085|ref|YP_003708190.1| putative RNA methylase [Methanococcus voltae A3]
gi|297379062|gb|ADI37217.1| putative RNA methylase [Methanococcus voltae A3]
Length = 420
Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 215 RILVSST--KPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLG 272
R +V+ + D++ DPF G+G A + IG ++ + ++ + + +
Sbjct: 263 RCIVNLSRVNENDVLYDPFCGTGGFLIEAGLIGCKLIGSDIDYNMVNGTKLNLETYELND 322
Query: 273 NI-ELTVLTGKRTEPRVAFNLLVE 295
+ + L E + L E
Sbjct: 323 KVICIKQLDANEAESYINSLGLTE 346
>gi|158314558|ref|YP_001507066.1| hypothetical protein Franean1_2734 [Frankia sp. EAN1pec]
gi|158109963|gb|ABW12160.1| hypothetical protein Franean1_2734 [Frankia sp. EAN1pec]
Length = 269
Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 220 STKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
++PGD + DP G GT A A RR IGI + A +
Sbjct: 58 YSRPGDTVCDPDCGPGTVIAEAVHARRHAIGITTDAGRWETARAAL 103
>gi|300864599|ref|ZP_07109458.1| putative methyltransferase [Oscillatoria sp. PCC 6506]
gi|300337423|emb|CBN54606.1| putative methyltransferase [Oscillatoria sp. PCC 6506]
Length = 180
Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPY 49
+I++G++I+ L KL + D I+ DPPY
Sbjct: 93 QILRGDAIAELHKLAGQQFDRIYFDPPY 120
>gi|288930665|ref|YP_003434725.1| ribosomal L11 methyltransferase [Ferroglobus placidus DSM 10642]
gi|288892913|gb|ADC64450.1| ribosomal L11 methyltransferase [Ferroglobus placidus DSM 10642]
Length = 197
Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 195 LRNKDGEKLHPTQ--KPEALLSRILVSSTKPGDI--ILDPFFGSGTSGAVAKKLRRSFIG 250
L+ K+ Q P AL++ I++ + D+ + D G+G + L IG
Sbjct: 13 LKGFKNPKIFLEQYVTPPALVAEIVLFAKMQNDLDLVFDLGCGTGIISIASALLGAFSIG 72
Query: 251 IEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPR 287
+++ ++ + +A + + + L + + +
Sbjct: 73 VDVDREALSVARENSKTCGVPVDFVLCDVENFNAKKK 109
>gi|34763569|ref|ZP_00144504.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27886758|gb|EAA23896.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 370
Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 7/125 (5%)
Query: 3 QKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
+ ++ + ++ + ++ IK + ++K DLI ++PPY + + P+
Sbjct: 215 NEKAIELANENKTLNKIENVNFIKSDLFEKIDK--DFKYDLIVSNPPYISKNEYETLMPE 272
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ D F R LK G L Y+ + +LQN
Sbjct: 273 VKNYEPQNALTDLGDG----LYFYREISKLAGEYLKDTGYLAYEIGYNQAKDVTKILQNN 328
Query: 122 NFWIL 126
NF IL
Sbjct: 329 NFDIL 333
>gi|255319452|ref|ZP_05360666.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter
radioresistens SK82]
gi|262378524|ref|ZP_06071681.1| tRNA (guanine-N(7))-methyltransferase [Acinetobacter radioresistens
SH164]
gi|255303392|gb|EET82595.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter
radioresistens SK82]
gi|262299809|gb|EEY87721.1| tRNA (guanine-N(7))-methyltransferase [Acinetobacter radioresistens
SH164]
Length = 238
Score = 36.9 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 16 IFEWKD-KIIKGNSISVLEKLPAKSVDLI---FADPPYNLQLNGQLYR-PDHSLVDAVTD 70
+ K+ +++ ++I VL ++P S++ I F DP + R H ++ V
Sbjct: 109 MAGLKNLRLLDADAIQVLREMPDNSINCIQLYFPDP--WQKKRHFKRRFVAHERMELVEQ 166
Query: 71 SWDKFSSFEA------YDAFTRAWLLACRR--VLKPNGTLWVIGSYH 109
+ +F + Y + L R L G + +
Sbjct: 167 KLELGGTFHSATDWEPYAEWMLEVLDNRPRLENLAGKGHSYPRPDWR 213
>gi|328947570|ref|YP_004364907.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
succinifaciens DSM 2489]
gi|328447894|gb|AEB13610.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
succinifaciens DSM 2489]
Length = 355
Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
++K+ +S+++L+K+ VD+++ DPPYN
Sbjct: 208 ENKVYNDDSMNLLDKIN---VDILYLDPPYN 235
>gi|256545595|ref|ZP_05472954.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus vaginalis ATCC
51170]
gi|256398720|gb|EEU12338.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus vaginalis ATCC
51170]
Length = 425
Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 4 KNSLAINENQNSIFEWKDK----IIKGNSISVLEKLPAKSVDLIFADPPYN 50
+ + I + + + + II G+S S++ D+I PPY
Sbjct: 205 EYFIKIINDNSEHLNYSNTTSSNIIYGDSSSIINNKLKGKFDIICTSPPYG 255
Score = 36.2 bits (82), Expect = 9.1, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQP 270
LLS I +LDPF GSGT+ +A++LR + +GI++ ++ +
Sbjct: 49 QLLSVISKHLNNKNITLLDPFCGSGTTLVIAQELRINSVGIDINPYATLLSFVKTHKYDR 108
Query: 271 LG 272
Sbjct: 109 TD 110
>gi|257452576|ref|ZP_05617875.1| methyltransferase [Fusobacterium sp. 3_1_5R]
gi|317059116|ref|ZP_07923601.1| methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313684792|gb|EFS21627.1| methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 368
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
KL KS D+I ++PPY Q + P+ + D + F + +
Sbjct: 259 KLEGKSFDIIVSNPPYIPQEEYEDLMPEVKNYEPKNALTDAGDGYS----FYQRIIQEAN 314
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILN 127
L G L Y ++ ++ F L
Sbjct: 315 DYLNEKGYLLFEVGYQQAKQVKQWMEEEKFEDLY 348
>gi|93006837|ref|YP_581274.1| hypothetical protein Pcryo_2013 [Psychrobacter cryohalolentis K5]
gi|122414932|sp|Q1Q963|TRMB_PSYCK RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
Full=tRNA(m7G46)-methyltransferase
gi|92394515|gb|ABE75790.1| tRNA (guanine-N(7)-)-methyltransferase [Psychrobacter
cryohalolentis K5]
Length = 273
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 22/120 (18%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+II G++I +L++LP +D QLY PD W K +
Sbjct: 152 RIINGDAIQLLKQLPENHID------------RIQLYFPDP---------WQKKRHHKRR 190
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFR 141
+ + R LK G + + + + + N P+FR
Sbjct: 191 FV-SPERMAIVTRSLKQGGWFHTATDWEHYAFWMVEVLDGFVGLSNQAGAGNFTSRPDFR 249
>gi|148658155|ref|YP_001278360.1| hypothetical protein RoseRS_4066 [Roseiflexus sp. RS-1]
gi|148570265|gb|ABQ92410.1| hypothetical protein RoseRS_4066 [Roseiflexus sp. RS-1]
Length = 281
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 16/95 (16%)
Query: 27 NSISVLEKLP--AKSVDLIFADPPY--NLQLNGQLYRPDHSLVDAVTDSWDKF------- 75
+ LP +D + DPPY +L + A DS+
Sbjct: 131 DC----RNLPYRDGEIDCVVLDPPYMESLLRKNVDHFGGSGTYAAFRDSYSNGKVVGDSE 186
Query: 76 -SSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
+A RVL+ G L V
Sbjct: 187 AKWHDAVLDLYYKAADEAYRVLRKRGILIVKCQDE 221
>gi|330444155|ref|YP_004377141.1| methyltransferase [Chlamydophila pecorum E58]
gi|328807265|gb|AEB41438.1| methyltransferase, putative [Chlamydophila pecorum E58]
Length = 184
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 39 SVDLIFADPPYNLQLNG 55
S DLI+ DPPY+L +
Sbjct: 113 SFDLIYIDPPYDLDSSY 129
>gi|323492635|ref|ZP_08097779.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio brasiliensis LMG
20546]
gi|323313010|gb|EGA66130.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio brasiliensis LMG
20546]
Length = 707
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + + + LE DLIF DPP R + S F
Sbjct: 595 HRFEQADCLQWLET-STAQFDLIFIDPP----TFSNSKRMEQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + + L+ L N + ++ P+
Sbjct: 639 HIQLM----KNLKRLLRAGGTIVFSNNKRHFKMDLEALEQLGLEAKN--ISHQTLPLDFA 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|300866888|ref|ZP_07111563.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300335138|emb|CBN56725.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 810
Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHP--------TQKPEALLSRILV-SSTKPGDIILDP 230
M+ L E+L HP +S + ++ K +II+DP
Sbjct: 1 MKHLGLPLEVISKEKLSTNLTANRHPIHRWFNFIAGFSPEFVSNCIQEANLKSNEIIIDP 60
Query: 231 FFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAF 290
F G T+ A + IG E+ + DI+ ++ P G ++ + R F
Sbjct: 61 FAGLSTTLVQANREGIQSIGFEVHPFFYDISLAKL--FPPKGEQQINNIESICQSVRPYF 118
Query: 291 NLLVE 295
L E
Sbjct: 119 GELTE 123
>gi|45357712|ref|NP_987269.1| putative RNA methylase [Methanococcus maripaludis S2]
gi|45047272|emb|CAF29705.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 350
Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSST--KPGDIILDPFF 232
N+ + + R HP L +R LV+ + K G+I+LDPF
Sbjct: 155 NDKMYTGIVIEKRDVEYFQNNRPHLRAYFHPGCIMPKL-ARCLVNLSRVKEGEIVLDPFC 213
Query: 233 GSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
G+G A L IG ++ + ++ A + +
Sbjct: 214 GTGGFLIEAGFLGCKLIGSDIDEQMVNGALLNLNTY 249
>gi|34556476|ref|NP_906291.1| hypothetical protein WS0017 [Wolinella succinogenes DSM 1740]
gi|34482190|emb|CAE09191.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 391
Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 4 KNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA--KSVDLIFADPP 48
K +L++N+ +N K +II N L+ L + DLI DPP
Sbjct: 255 KKNLSLNQLEN-----KGRIISANVFDELKGLREREEKFDLIILDPP 296
>gi|212636800|ref|YP_002313325.1| peptidase S10, serine carboxypeptidase [Shewanella piezotolerans
WP3]
gi|212558284|gb|ACJ30738.1| Peptidase S10, serine carboxypeptidase [Shewanella piezotolerans
WP3]
Length = 511
Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
+ +S DL+F DP + ++ D W ++ F R WL+
Sbjct: 147 SILDES-DLVFIDP---VGTGFSRALGENKGA----DFWGVSEDAKSIAEFMRRWLIEHG 198
Query: 94 RVLKP 98
R P
Sbjct: 199 RWNSP 203
>gi|194766081|ref|XP_001965153.1| GF23689 [Drosophila ananassae]
gi|190617763|gb|EDV33287.1| GF23689 [Drosophila ananassae]
Length = 320
Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
+L K DLI ++PPY ++ Y +V ++ D S R
Sbjct: 211 ELKDKKYDLIISNPPY-VKTEEFQYLHPEVVVYENLNALDGGSDG---LRVARLVFELAC 266
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
R L P G LW+ + + T++ L
Sbjct: 267 RHLHPGGKLWLELGNEHPPMVKTIMNLKYEGRLKF 301
>gi|329769536|ref|ZP_08260946.1| hypothetical protein HMPREF0433_00710 [Gemella sanguinis M325]
gi|328838751|gb|EGF88349.1| hypothetical protein HMPREF0433_00710 [Gemella sanguinis M325]
Length = 253
Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 27 NSISVLEKLPAKSVDLIFADP 47
+ + L+K S D+I+ DP
Sbjct: 158 DCLEYLKKCEDNSFDIIYFDP 178
>gi|294650030|ref|ZP_06727418.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter haemolyticus
ATCC 19194]
gi|292824123|gb|EFF82938.1| tRNA (guanine-N(7)-)-methyltransferase [Acinetobacter haemolyticus
ATCC 19194]
Length = 238
Score = 36.6 bits (83), Expect = 6.2, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 23/127 (18%)
Query: 16 IFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
+ E K+ +++ ++I VL ++P S+D + QLY PD W K
Sbjct: 109 MAELKNLRVLDADAIQVLREMPDNSIDCV------------QLYFPDP---------WQK 147
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKS 134
F+ + + L GT + + + + N S
Sbjct: 148 KRHFKRRFV-IHERMQLVEQKLALGGTFHAATDWEPYAEWMLDVLDNRPNLENLAGKSNS 206
Query: 135 NPMPNFR 141
P P++R
Sbjct: 207 YPRPDWR 213
>gi|308189608|ref|YP_003922539.1| Type III site-specific deoxyribonuclease [Mycoplasma fermentans
JER]
gi|307624350|gb|ADN68655.1| putative Type III site-specific deoxyribonuclease [Mycoplasma
fermentans JER]
Length = 402
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 199 DGEKLHPTQKPEALLSRILVS-STKPGDIILDPFFGSGTSGAVAKKLR------RSFIGI 251
D T K L++ ++ ILD F GSGT+G ++ R F +
Sbjct: 237 DENTKFNTCKNIDLINYLINIKLNNKEARILDFFAGSGTTGHAILEMNKKDGGKRQFTLV 296
Query: 252 EMKQDYI--DIATKRIASVQ--PLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTN 307
++ + I +R+ + + + K+ P + + L +
Sbjct: 297 TNDENNVGTKICYERLYRINNGKGTDNSTSFAWLKKNTPYKNNLDIFNIKYYK--TELFD 354
>gi|260778573|ref|ZP_05887465.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604737|gb|EEX31032.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio
coralliilyticus ATCC BAA-450]
Length = 707
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ + + + LE+ DLIF DPP R + S F
Sbjct: 595 HRFEQADCLQWLER-STAQFDLIFIDPP----TFSNSKRMEQS-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+ GT+ + + L L N + ++ PM
Sbjct: 639 HIQLM----KNLKRLLRNGGTIVFSNNKRHFKMDMDGLDELGLVAKN--ISHQTLPMDFS 692
Query: 141 RGRRFQNAH 149
R + N
Sbjct: 693 RNKHIHNCW 701
>gi|218883850|ref|YP_002428232.1| putative RNA methylase [Desulfurococcus kamchatkensis 1221n]
gi|218765466|gb|ACL10865.1| putative RNA methylase [Desulfurococcus kamchatkensis 1221n]
Length = 340
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 24 IKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDA 83
I G+S ++L+ + SVD I DPPY + + + +W + +Y +
Sbjct: 240 ILGDS-TLLDLI---SVDAIATDPPYGRGASMHGHSYLELYSMFIDKAWSILRNN-SYMS 294
Query: 84 FTRAWLLA--CRRVLKPNGTLWVIGSYHNIF 112
F L +L NG V Y +
Sbjct: 295 FMTPIELEEVVGELLCRNGFTEVSRYYQYVH 325
>gi|224372548|ref|YP_002606920.1| diguanylate cyclase [Nautilia profundicola AmH]
gi|223589976|gb|ACM93712.1| diguanylate cyclase [Nautilia profundicola AmH]
Length = 400
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 3 QKNSLAINENQNSIFEWKDKIIK---------GNSISVLEKLPAKSVDLIFAD 46
++ + I + +I + + +I+ + + LEKL S+DLI D
Sbjct: 120 RQVKVLIVDKDKNILDLEKRILNKININVIQAQDGLEALEKLKTNSIDLILTD 172
>gi|326386604|ref|ZP_08208226.1| tRNA (guanine-N(7)-)-methyltransferase [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208919|gb|EGD59714.1| tRNA (guanine-N(7)-)-methyltransferase [Novosphingobium
nitrogenifigens DSM 19370]
Length = 239
Score = 36.6 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 22 KIIKGNSISVLEKLPAKS 39
+I G+++ VL ++P S
Sbjct: 114 RIHHGDALEVLRRIPDGS 131
>gi|304385138|ref|ZP_07367484.1| probable methyltransferase [Pediococcus acidilactici DSM 20284]
gi|304329332|gb|EFL96552.1| probable methyltransferase [Pediococcus acidilactici DSM 20284]
Length = 184
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 22 KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQL 53
+IIKG++ V+ L ++V +++F DPPY LQ
Sbjct: 94 QIIKGDTKKVIHNLAKQAVSYNMVFFDPPYALQT 127
>gi|270291425|ref|ZP_06197647.1| RsmD family RNA methyltransferase [Pediococcus acidilactici 7_4]
gi|270280271|gb|EFA26107.1| RsmD family RNA methyltransferase [Pediococcus acidilactici 7_4]
Length = 184
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 22 KIIKGNSISVLEKLPAKSV--DLIFADPPYNLQL 53
+IIKG++ V+ L ++V +++F DPPY LQ
Sbjct: 94 QIIKGDTKKVIHNLAKQAVSYNMVFFDPPYALQT 127
>gi|255015915|ref|ZP_05288041.1| adenine-specific DNA methylase [Bacteroides sp. 2_1_7]
gi|298376904|ref|ZP_06986858.1| modification methylase MvaI [Bacteroides sp. 3_1_19]
gi|298265888|gb|EFI07547.1| modification methylase MvaI [Bacteroides sp. 3_1_19]
Length = 414
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ SVD++ PPY + + W F + + D
Sbjct: 238 IQPNSVDMVVTSPPY----GDSRTTVAYGQFSRWANEWFNFENAKTLDNLLM 285
>gi|195113407|ref|XP_002001259.1| GI10687 [Drosophila mojavensis]
gi|193917853|gb|EDW16720.1| GI10687 [Drosophila mojavensis]
Length = 491
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
+ + GD++ DPF G+G+ A K +G ++ + A R
Sbjct: 207 QALVRDGDLVFDPFVGTGSLLVSAAKFGGYVLGADIDFMMVH-ARCR 252
>gi|195118905|ref|XP_002003972.1| GI18199 [Drosophila mojavensis]
gi|193914547|gb|EDW13414.1| GI18199 [Drosophila mojavensis]
Length = 337
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 34 KLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACR 93
+L K DLI ++PPY Q P+ + + + R
Sbjct: 228 ELQDKQYDLIISNPPYVKTEEFQFLHPEVVVYENLN----ALDGGSDGLRVARLVFELAC 283
Query: 94 RVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
R L+P G LW+ + + T++ LN
Sbjct: 284 RHLRPGGQLWLELGNDHPPLVKTIMNMQYQGRLNF 318
>gi|167620605|ref|ZP_02389236.1| type I restriction-modification system, M subunit [Burkholderia
thailandensis Bt4]
Length = 542
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKL-----R 245
ER + G+K P ++SR+L ++ KPGD I DP GSG+ A ++
Sbjct: 188 ERFGSDAGKKAGEFYTP-KMVSRLLSALARPKPGDRICDPSCGSGSLLIEAAQMVEAQDS 246
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGN 273
++ + + A R+ +
Sbjct: 247 HNYALFGEEVNGATWALARMNMFIHSKD 274
>gi|28374227|gb|AAH46012.1| Trmt11 protein [Danio rerio]
Length = 384
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ KP D++ DPF G+G+ G ++ + I
Sbjct: 212 HAKVKPNDLVYDPFVGTGSLLVACSHFGAYVCGTDIDYNTIH 253
>gi|127512740|ref|YP_001093937.1| 23S rRNA m(2)G2445 methyltransferase [Shewanella loihica PV-4]
gi|229560177|sp|A3QDY0|RLML_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase L;
AltName: Full=23S rRNA m2G2445 methyltransferase;
AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
rlmL
gi|126638035|gb|ABO23678.1| putative RNA methylase [Shewanella loihica PV-4]
Length = 711
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 20/101 (19%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY 81
+ I+G+ + ++ + DLIF DPP D F +
Sbjct: 601 QFIQGDCLQWIDDC-DQQYDLIFIDPP---------------TFSNSKRMEDSFDVQRDH 644
Query: 82 DAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
L A ++L+P G + + L L
Sbjct: 645 VKL----LSALVKLLRPGGEILFSNNKRKFKMDSEALSALG 681
>gi|67619293|ref|XP_667638.1| translation initiation factor if-2, 73082-68138 [Cryptosporidium
hominis TU502]
gi|54658791|gb|EAL37408.1| translation initiation factor if-2, 73082-68138 [Cryptosporidium
hominis]
Length = 661
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 291 NLLVERGLIQPGQILTNAQGNISATVCA-----DGTLISGTELGSIHRVGAKVSGSETCN 345
+ VE G+++PG L + + + +S + G V K+ +
Sbjct: 552 GVYVEEGILKPGTPLCIPEKDNLMIGRVTSVEFNKKPVSEGKKG--QEVAVKIQPFASDT 609
Query: 346 GWNF-WYFEKLGELH------SINTLRILVRKEL 372
+ +F+ +L SI+ L+ R +L
Sbjct: 610 NITYGRHFDHNDKLVSRITRDSIDILKQHFRDDL 643
>gi|301311110|ref|ZP_07217039.1| modification methylase MvaI [Bacteroides sp. 20_3]
gi|300831173|gb|EFK61814.1| modification methylase MvaI [Bacteroides sp. 20_3]
Length = 414
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ SVD++ PPY + + W F + + D
Sbjct: 238 IQPNSVDMVVTSPPY----GDSRTTVAYGQFSRWANEWFNFENAKTLDNLLM 285
>gi|150009310|ref|YP_001304053.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
8503]
gi|149937734|gb|ABR44431.1| adenine-specific DNA methylase [Parabacteroides distasonis ATCC
8503]
Length = 414
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ SVD++ PPY + + W F + + D
Sbjct: 238 IQPNSVDMVVTSPPY----GDSRTTVAYGQFSRWANEWFNFENAKTLDNLLM 285
>gi|312873630|ref|ZP_07733677.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d]
gi|311090883|gb|EFQ49280.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d]
Length = 231
Score = 36.6 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 15 SIFEWKDKIIKGNSISVLEKLP---AKSVDLIFA 45
++ + + IIKGN++ L L V I+
Sbjct: 183 TLNDDDNLIIKGNNLIALASLLKRYEGKVKCIYI 216
>gi|159044466|ref|YP_001533260.1| putative modification methylase [Dinoroseobacter shibae DFL 12]
gi|157912226|gb|ABV93659.1| putative modification methylase [Dinoroseobacter shibae DFL 12]
Length = 482
Score = 36.6 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 180 MRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGA 239
RS R R ++ P + + S +ILDPF GSGT+
Sbjct: 75 YRSPVNFIESMQMPRHRWFPYKEGFS---PSFVKEFLSASVKIEDGLILDPFSGSGTTPL 131
Query: 240 VAKKLRRSFIGIEMKQ 255
VA +LR +G ++
Sbjct: 132 VAGELRLRGLGFDVSP 147
>gi|270299660|gb|ACZ68466.1| modification methylase [Staphylococcus aureus]
Length = 710
Score = 36.6 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 45/238 (18%)
Query: 17 FEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVD-------AVT 69
F + I ++ +++++ S DLI+ D PYN + Y ++V+ V
Sbjct: 246 FNRDNDIYCKDANQLVKEI---SADLIYIDTPYNSRQYSDAYHLLENIVEWKKPPVTGVA 302
Query: 70 DSW-DKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILND 128
D+ + Y T A ++K +++ SY+N+ R G
Sbjct: 303 KKMVDRSKTKSNY--STNKAPEAFADLIKNIKARYILVSYNNMARKG------------- 347
Query: 129 IVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPI 188
N R + E + K K + ++ A + + L
Sbjct: 348 ----------NGRSNAKISNEEIIHTLEKKGKVKVFETSFQAYTTGKSVIDDHKEILYLC 397
Query: 189 CSGSERLRNKDGEKLHPTQKPE-------ALLSRILVSSTKPGDIILDPFFGSGTSGA 239
+ ++NK +K H T LL +I+ K + +D F G +
Sbjct: 398 EVSQKEVKNK--QKNHYTPSAINYTGSKYRLLDQIITLFPKEYNNFIDLFAGGSSVAI 453
>gi|41529824|ref|NP_956510.2| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Danio rerio]
gi|33329805|gb|AAQ10288.1| putative RNA methylase [Danio rerio]
Length = 466
Score = 36.6 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 218 VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYID 259
+ KP D++ DPF G+G+ G ++ + I
Sbjct: 212 HAKVKPNDLVYDPFVGTGSLLVACSHFGAYVCGTDIDYNTIH 253
>gi|254519229|ref|ZP_05131285.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226912978|gb|EEH98179.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 184
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 24 IKGNSISVLEKL-PAKSV-DLIFADPPYN---------LQLNGQLYRPDH---SLVDAVT 69
+ +S L+ L + D+IF DPPY + + + + + +D++
Sbjct: 96 LNMDSYDALKMLNKKGKIFDIIFIDPPYCKEMIPEAIKIIKENNMLKENGIIVTKIDSIE 155
Query: 70 DSWDKFSSFE 79
+ +D + +
Sbjct: 156 EIYDGYKDIK 165
>gi|87198330|ref|YP_495587.1| tRNA (guanine-N(7))-methyltransferase [Novosphingobium
aromaticivorans DSM 12444]
gi|123490922|sp|Q2GBM0|TRMB_NOVAD RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
Full=tRNA(m7G46)-methyltransferase
gi|87134011|gb|ABD24753.1| tRNA (guanine-N(7)-)-methyltransferase [Novosphingobium
aromaticivorans DSM 12444]
Length = 238
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 22 KIIKGNSISVLEKLPAKS 39
+I G+++ VL ++P S
Sbjct: 114 RIHHGDALEVLRRIPDGS 131
>gi|302670477|ref|YP_003830437.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
gi|302394950|gb|ADL33855.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
Length = 380
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 5 NSLAINENQNSIFEWKDKIIKG---NSISVLEKLPAKSVDLIF 44
N ++ N++ I ++K I G +S ++++ SVDL+
Sbjct: 119 NVTDLDPNEDCIANARNKKINGILADSTD-MKQIKDNSVDLVI 160
>gi|239994027|ref|ZP_04714551.1| 23S rRNA m(2)G2445 methyltransferase [Alteromonas macleodii ATCC
27126]
Length = 698
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 32/117 (27%)
Query: 5 NSLAINENQNSIFEW------KDKI------IKGNSISVLEKLPAKSVDLIFADPPYNLQ 52
S+ + N+ EW +K+ I+ + + L DLIF DPP
Sbjct: 560 KSVTTVDMSNTYLEWAKKNVALNKLTAPHAFIQADCTTWLGT-HKGKYDLIFIDPP---- 614
Query: 53 LNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYH 109
S + ++WD L + LK G + +
Sbjct: 615 --------SFSNSKRMQNTWDVQRDH-------VKMLTDAKACLKEQGIIIFSNNKR 656
>gi|66475520|ref|XP_627576.1| Fun12p GTpase; translation initiation factor IF2 [Cryptosporidium
parvum Iowa II]
gi|46229287|gb|EAK90136.1| Fun12p GTpase; translation initiation factor IF2 [Cryptosporidium
parvum Iowa II]
Length = 896
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 26/100 (26%)
Query: 291 NLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHR-----------VGAKVS 339
+ VE G+++PG L D +I ++ V K+
Sbjct: 787 GVYVEEGILKPGTPL--------CIPEKDNLMIGRVTSVEFNKKPVNEGKKGQEVAVKIQ 838
Query: 340 GSETCNGWNF-WYFEKLGELH------SINTLRILVRKEL 372
+ + +F+ +L SI+ L+ R +L
Sbjct: 839 PFASDTNITYGRHFDHNDKLVSRITRDSIDILKQHFRDDL 878
>gi|283954225|ref|ZP_06371749.1| hypothetical protein C414_000090016 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794243|gb|EFC32988.1| hypothetical protein C414_000090016 [Campylobacter jejuni subsp.
jejuni 414]
Length = 233
Score = 36.6 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 19/135 (14%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPA-KSVDLIFADPPYNLQLNGQLYRPD 61
QK ++ + E + + I G+ + + + D I +PP+ Q +
Sbjct: 65 QKENIELIEKNLKANQIQADIFHGD----FNEFQSVQKFDFIVCNPPFYRQGAYK----- 115
Query: 62 HSLVDAVTDSWDKFSS-FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
++ W K S F+ + ++L +LKPNGTL+ + I +L++
Sbjct: 116 -------SEDWHKNMSKFQEFLP-LDSFLTKANSILKPNGTLYFCYEALVLDEICFILKD 167
Query: 121 LNFWILNDIVWRKSN 135
+ I+
Sbjct: 168 MKMKIIKLCFVHTYQ 182
>gi|289580068|ref|YP_003478534.1| hypothetical protein Nmag_0382 [Natrialba magadii ATCC 43099]
gi|289529621|gb|ADD03972.1| protein of unknown function DUF1156 [Natrialba magadii ATCC 43099]
Length = 894
Score = 36.6 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
PE+L +LDPF G GTS A + S +G ++ + K + +
Sbjct: 108 PESLWELYPKDVRVDDKKVLDPFMGGGTSLMEASRFGASVVGNDLNPVAWFVTKKELEAG 167
Query: 269 QPLGN 273
Q +
Sbjct: 168 QTDPD 172
>gi|312962463|ref|ZP_07776954.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
gi|311283390|gb|EFQ61980.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
Length = 756
Score = 36.6 bits (83), Expect = 7.2, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 20/91 (21%)
Query: 20 KDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFE 79
K+++ +G+ ++ LE + DLIF DPP F
Sbjct: 646 KNRLEQGDVMAWLEASRDE-FDLIFIDPP---------------TFSNSKRMEGIFDVQR 689
Query: 80 AYDAFTRAWLLACRRVLKPNGTLWVIGSYHN 110
+ L L P G L+ ++
Sbjct: 690 DHVQL----LDLAMARLAPGGVLYFSNNFRK 716
>gi|256841878|ref|ZP_05547384.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
gi|262384196|ref|ZP_06077332.1| adenine-specific DNA methylase [Bacteroides sp. 2_1_33B]
gi|256736772|gb|EEU50100.1| adenine-specific DNA methylase [Parabacteroides sp. D13]
gi|262295094|gb|EEY83026.1| adenine-specific DNA methylase [Bacteroides sp. 2_1_33B]
Length = 414
Score = 36.6 bits (83), Expect = 7.2, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
+ SVD++ PPY + + W F + + D
Sbjct: 238 IQPNSVDMVVTSPPY----GDSRTTVAYGQFSRWANEWFNFENAKTLDNLLM 285
>gi|156088907|ref|XP_001611860.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799114|gb|EDO08292.1| hypothetical protein BBOV_III007310 [Babesia bovis]
Length = 725
Score = 36.6 bits (83), Expect = 7.2, Method: Composition-based stats.
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPA 37
++ W + +I G+ + +L +L
Sbjct: 474 NMMSWMNSLISGDCMQLLHQLED 496
>gi|318040298|ref|ZP_07972254.1| hypothetical protein SCB01_01267 [Synechococcus sp. CB0101]
Length = 190
Score = 36.6 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 191 GSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLR 245
G RL + G+ PT L ++++ PG LD F GSG G A +
Sbjct: 7 GGRRLHSPPGDTARPTPSRVRLAVMNMLAADLPGCRWLDLFCGSGVMGCEALQRG 61
>gi|261211618|ref|ZP_05925905.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio sp. RC341]
gi|260838968|gb|EEX65600.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio sp. RC341]
Length = 711
Score = 36.6 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ + + L DLIF DPP R + + F
Sbjct: 599 HQYIQADCLQWLAN-AQGQYDLIFIDPP----TFSNSKRMEQT-----------FDVQRD 642
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + LQ+L + ++ P+
Sbjct: 643 HVTLMTN----LKRLLRPEGTIVFSNNKRHFKMDLEALQSLGLN--AQNISHQTLPLDFE 696
Query: 141 RGRRFQNAH 149
R ++ N
Sbjct: 697 RNKQIHNCW 705
>gi|118375695|ref|XP_001021031.1| methyltransferase, putative [Tetrahymena thermophila]
gi|89302798|gb|EAS00786.1| methyltransferase, putative [Tetrahymena thermophila SB210]
Length = 280
Score = 36.6 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 210 EALLSRILVSSTKPGD---IILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKR 264
E L R + P +ILD GSG SGA + ++GI++ +D +++A +R
Sbjct: 30 EQLTERCIELLNIPEGEDQLILDIGCGSGLSGAQLSEHNHHWVGIDISRDMLNVAVER 87
>gi|53803793|ref|YP_114323.1| type I restriction-modification system, M subunit [Methylococcus
capsulatus str. Bath]
gi|53757554|gb|AAU91845.1| type I restriction-modification system, M subunit [Methylococcus
capsulatus str. Bath]
Length = 526
Score = 36.6 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 193 ERLRNKDGEKLHPTQKPEALLSRIL--VSSTKPGDIILDPFFGSGTSGAVAKKL-----R 245
ER + G+K P ++SR+L +++ +PGD I DP GSG+ A +
Sbjct: 188 ERFGSDAGKKAGEFYTP-KMVSRLLAALANPRPGDRICDPSCGSGSLLIEAAQWVEAQGS 246
Query: 246 RSFIGIEMKQDYIDIATKRIASVQPLGN 273
++ + + A R+ +
Sbjct: 247 HNYALFGEEVNGATWALARMNMFIHSKD 274
>gi|256027763|ref|ZP_05441597.1| methyltransferase [Fusobacterium sp. D11]
Length = 383
Score = 36.6 bits (83), Expect = 7.4, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 10/131 (7%)
Query: 2 SQKNSLAINENQ---NSIFEWKDKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNG 55
S + INE + + +KI N I + EKL DLI ++PPY +
Sbjct: 220 SSITGIDINEKAIKLANENKILNKIENVNFIESNLFEKLDKDFKYDLIVSNPPYISKEEY 279
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ P+ + D F R LK G L Y+ +
Sbjct: 280 ETLMPEVKNYEPQNALTDLGDG----LYFYREISKLAGEYLKDTGYLAYEIGYNQAKDVT 335
Query: 116 TMLQNLNFWIL 126
+LQN NF IL
Sbjct: 336 KILQNNNFDIL 346
>gi|134298744|ref|YP_001112240.1| D12 class N6 adenine-specific DNA methyltransferase
[Desulfotomaculum reducens MI-1]
gi|134051444|gb|ABO49415.1| D12 class N6 adenine-specific DNA methyltransferase
[Desulfotomaculum reducens MI-1]
Length = 296
Score = 36.6 bits (83), Expect = 7.4, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 27/117 (23%)
Query: 5 NSLAINENQNSIFEWKDKI--IKGNSISVLEKLPAKSVD---LIFADPPYNLQLNGQLYR 59
N I + ++K+++ G+++ L++ + ++ADPPY L
Sbjct: 155 NKHNIISQIERLSKFKNRVEVFFGDAMEFLKQNKKNFLKGNFFLYADPPYYL-------- 206
Query: 60 PDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGT 116
K S Y + + +L N V H R
Sbjct: 207 --------------KGKSLYRYWYEHKEHKALAKFLLSSNCNWLVSYDDHAEIRKMY 249
>gi|188589222|ref|YP_001920527.1| O-methyltransferase family protein [Clostridium botulinum E3 str.
Alaska E43]
gi|188499503|gb|ACD52639.1| O-methyltransferase family protein [Clostridium botulinum E3 str.
Alaska E43]
Length = 214
Score = 36.6 bits (83), Expect = 7.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
+N + ++ + KI +G+ + VLEKL + DLIF D
Sbjct: 97 KLNLKKFNLEDKI-KIEQGDCLEVLEKL-EEPFDLIFMD 133
>gi|288800827|ref|ZP_06406284.1| RNA methyltransferase, RsmD family [Prevotella sp. oral taxon 299
str. F0039]
gi|288332288|gb|EFC70769.1| RNA methyltransferase, RsmD family [Prevotella sp. oral taxon 299
str. F0039]
Length = 181
Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 23 IIKGNSISVLEKLPAKSVDLIFADPPYNLQL 53
+I+G+ L+ ++ DLIFADPPY L+
Sbjct: 96 LIRGDVFRYLKSC-RETFDLIFADPPYALKN 125
>gi|237740337|ref|ZP_04570818.1| methyltransferase [Fusobacterium sp. 2_1_31]
gi|229422354|gb|EEO37401.1| methyltransferase [Fusobacterium sp. 2_1_31]
Length = 369
Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 2 SQKNSLAINENQNSIFEWKDKIIKG-NSISVLE-----KLPAK-SVDLIFADPPYNLQLN 54
S L INE+ + ++K++ +++ ++ KL DLI ++PPY +
Sbjct: 207 SSVTGLDINEDAIRLAN-ENKVLNKVENVNFMKSDLFEKLDEDFKYDLIVSNPPYITKEE 265
Query: 55 GQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRI 114
+ P+ + D F R LK G L Y +
Sbjct: 266 YETLMPEVKNFEPKNALTDLGDG----LHFYREISKKAESYLKDTGYLAFEIGYKQAKEV 321
Query: 115 GTMLQNLNF 123
+L++ NF
Sbjct: 322 SKILEDNNF 330
>gi|289765719|ref|ZP_06525097.1| methyltransferase [Fusobacterium sp. D11]
gi|289717274|gb|EFD81286.1| methyltransferase [Fusobacterium sp. D11]
Length = 370
Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 10/131 (7%)
Query: 2 SQKNSLAINENQ---NSIFEWKDKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNG 55
S + INE + + +KI N I + EKL DLI ++PPY +
Sbjct: 207 SSITGIDINEKAIKLANENKILNKIENVNFIESNLFEKLDKDFKYDLIVSNPPYISKEEY 266
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ P+ + D F R LK G L Y+ +
Sbjct: 267 ETLMPEVKNYEPQNALTDLGDG----LYFYREISKLAGEYLKDTGYLAYEIGYNQAKDVT 322
Query: 116 TMLQNLNFWIL 126
+LQN NF IL
Sbjct: 323 KILQNNNFDIL 333
>gi|262376330|ref|ZP_06069560.1| SAM-dependent methyltransferase [Acinetobacter lwoffii SH145]
gi|262308931|gb|EEY90064.1| SAM-dependent methyltransferase [Acinetobacter lwoffii SH145]
Length = 734
Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 39/148 (26%), Gaps = 20/148 (13%)
Query: 3 QKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDH 62
K + +N + + + + L++ + +LIF DPP +
Sbjct: 605 SKENFVLNGLTVDHADEQHQFFASDCFEWLKE-GHEQYELIFIDPP---------TFSNS 654
Query: 63 SLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLN 122
D S L L +GTL+ +Y +L +
Sbjct: 655 KKFYGTFDVQRDHLSL----------LKRAMNRLTTDGTLYFSNNYRGFEMDEEILAFFD 704
Query: 123 FWILNDIVWRKSNPMPNFRGRRFQNAHE 150
+ R ++ H
Sbjct: 705 VEEITQETIGPDFKRNQKIHRAWKIRHP 732
>gi|313227353|emb|CBY22499.1| unnamed protein product [Oikopleura dioica]
Length = 175
Score = 36.2 bits (82), Expect = 7.7, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 33 EKLPAKSVDLIFADPPYNL 51
+KLP KS D++ ADPP+ L
Sbjct: 110 KKLPEKSFDVVLADPPFWL 128
>gi|157363643|ref|YP_001470410.1| hypothetical protein Tlet_0780 [Thermotoga lettingae TMO]
gi|157314247|gb|ABV33346.1| conserved hypothetical protein [Thermotoga lettingae TMO]
Length = 256
Score = 36.2 bits (82), Expect = 7.7, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 11 ENQNSIFEWKD------KIIKGNSISVLEKLPAKSVDLIFADP 47
N S W + ++I + + LP S D+++ DP
Sbjct: 139 SNYKSNLPWINAAMKKIELIHADFKQFIRSLPDNSYDIVYCDP 181
>gi|296327944|ref|ZP_06870479.1| polypeptide chain release factor methyltransferase HemK
[Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
gi|296154900|gb|EFG95682.1| polypeptide chain release factor methyltransferase HemK
[Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
Length = 383
Score = 36.2 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 2 SQKNSLAINENQNSI---FEWKDKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNG 55
S + INE + + +KI N I + KL DLI ++PPY +
Sbjct: 220 SSVTGIDINEKAIKLAIENKILNKIENVNFIESNLFGKLDKDFKYDLIVSNPPYISKEEY 279
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ P+ + D F + LK G L Y+ +
Sbjct: 280 ETLMPEVKNYEPQNALTDLGDG----LHFYKEISKLAGEYLKDTGYLAFEIGYNQAKDVS 335
Query: 116 TMLQNLNF 123
+LQ+ NF
Sbjct: 336 KILQDNNF 343
>gi|238917056|ref|YP_002930573.1| hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
gi|238872416|gb|ACR72126.1| Hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
Length = 389
Score = 36.2 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 207 QKPEALLSRIL-VSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI 258
Q+ E L + + ++ D ++D + G GT G VA K IG+E+ + +
Sbjct: 225 QQTEKLYKKAIQLADISKNDTVIDAYCGIGTIGIVASKKAGKVIGVELNSEAV 277
>gi|296274534|ref|YP_003657165.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
7299]
gi|296098708|gb|ADG94658.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
7299]
Length = 668
Score = 36.2 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 27 NSISVLEKLPAKSVDLIFAD 46
+ + L L +DLI D
Sbjct: 40 DGLEALNILKDNKIDLIITD 59
>gi|240047738|ref|YP_002961126.1| hypothetical protein MCJ_006280 [Mycoplasma conjunctivae HRC/581]
gi|239985310|emb|CAT05323.1| HYPOTHETICAL Ribosomal RNA small subunit methyltransferase D
[Mycoplasma conjunctivae]
Length = 184
Score = 36.2 bits (82), Expect = 8.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 22 KIIKGNSISVLEKLPAKSVDLIFADPP 48
+++ N+++VL+K+ + DLIF DPP
Sbjct: 94 QVVNQNALNVLDKIKNQKFDLIFLDPP 120
>gi|183598035|ref|ZP_02959528.1| hypothetical protein PROSTU_01391 [Providencia stuartii ATCC 25827]
gi|188022814|gb|EDU60854.1| hypothetical protein PROSTU_01391 [Providencia stuartii ATCC 25827]
Length = 203
Score = 36.2 bits (82), Expect = 8.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKS-VDLIFADPPY 49
+ ++N+ + EN+ + II GNS+ +L + D++F DPP+
Sbjct: 87 LDKQNAQLLTENKARLQSDNANIINGNSLEILG--QNGTPFDVVFIDPPF 134
>gi|156349174|ref|XP_001621948.1| hypothetical protein NEMVEDRAFT_v1g143109 [Nematostella vectensis]
gi|156208312|gb|EDO29848.1| predicted protein [Nematostella vectensis]
Length = 388
Score = 36.2 bits (82), Expect = 8.1, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 21/111 (18%), Gaps = 1/111 (0%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
W RR GT W +++ R N W
Sbjct: 30 WWACWRRNCWTRGTWWACWRWNSWTRGTWWACWRWNSWTRGTWWACWRRNSWTRGNWWAC 89
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ ++ + + A G+ R
Sbjct: 90 WRWNSWTRSTWWACWRWNCWTRGTWWACWRRNSWTRSTWWACWRGNSWTRG 140
Score = 36.2 bits (82), Expect = 9.5, Method: Composition-based stats.
Identities = 10/111 (9%), Positives = 19/111 (17%), Gaps = 1/111 (0%)
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFR-IGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQ 146
W R GT W +++ R N W +
Sbjct: 44 WWACWRWNSWTRGTWWACWRWNSWTRGTWWACWRRNSWTRGNWWACWRWNSWTRSTWWAC 103
Query: 147 NAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLRN 197
+ + ++ A + R
Sbjct: 104 WRWNCWTRGTWWACWRRNSWTRSTWWACWRGNSWTRGTWWACWRRNSWTRG 154
>gi|256617867|ref|ZP_05474713.1| phage protein [Enterococcus faecalis ATCC 4200]
gi|256597394|gb|EEU16570.1| phage protein [Enterococcus faecalis ATCC 4200]
Length = 444
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S W I +S+++ + +S DL+F PPY + ++Y D + +
Sbjct: 273 SDINW----ICDDSLNIDHHIEDESQDLLFTCPPY---ADLEVYSDDERDISNM------ 319
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
S+E + L R LK N V S
Sbjct: 320 --SYEEFAEVYSEILKRSARKLKDNRFAVVTISD 351
>gi|315169428|gb|EFU13445.1| ParB-like nuclease domain protein [Enterococcus faecalis TX1342]
Length = 444
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 15 SIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDK 74
S W I +S+++ + +S DL+F PPY + ++Y D + +
Sbjct: 273 SDINW----ICDDSLNIDHHIEDESQDLLFTCPPY---ADLEVYSDDERDISNM------ 319
Query: 75 FSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
S+E + L R LK N V S
Sbjct: 320 --SYEEFAEVYSEILKRSARKLKDNRFAVVTISD 351
>gi|169841892|ref|ZP_02875001.1| hypothetical protein cdivTM_32335 [candidate division TM7
single-cell isolate TM7a]
Length = 35
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 183 DWLIPICSGSERLRNKDGEKLHPTQKPEALLSRI 216
W IP+C+G+ERL++ +G KLH TQKPE ++
Sbjct: 1 MWNIPVCNGNERLKDTNGNKLHSTQKPENYCIKL 34
>gi|258622856|ref|ZP_05717872.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258584795|gb|EEW09528.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 707
Score = 36.2 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ + + L DLIF DPP R + + F
Sbjct: 595 HQYIQADCLQWLAN-AQGQYDLIFIDPP----TFSNSKRMEQT-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + LQ L + ++ PM
Sbjct: 639 HVTLMTN----LKRLLRPEGTIVFSNNKRHFKMDLEALQALELN--AQNISHQTLPMDFE 692
Query: 141 RGRRFQNAH 149
R ++ N
Sbjct: 693 RNKQIHNCW 701
>gi|262171492|ref|ZP_06039170.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio mimicus
MB-451]
gi|261892568|gb|EEY38554.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio mimicus
MB-451]
Length = 707
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ + + L DLIF DPP R + + F
Sbjct: 595 HQYIQADCLQWLAN-AQGQYDLIFIDPP----TFSNSKRMEQT-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + LQ L + ++ PM
Sbjct: 639 HVTLMTN----LKRLLRPEGTIVFSNNKRHFKMDLEALQALELN--AQNISHQTLPMDFE 692
Query: 141 RGRRFQNAH 149
R ++ N
Sbjct: 693 RNKQIHNCW 701
>gi|258626750|ref|ZP_05721570.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580964|gb|EEW05893.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 707
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ + + L DLIF DPP R + + F
Sbjct: 595 HQYIQADCLQWLAN-AQGQYDLIFIDPP----TFSNSKRMEQT-----------FDVQRD 638
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + LQ L + ++ PM
Sbjct: 639 HVTLMTN----LKRLLRPEGTIVFSNNKRHFKMDLEALQALELN--AQNISHQTLPMDFE 692
Query: 141 RGRRFQNAH 149
R ++ N
Sbjct: 693 RNKQIHNCW 701
>gi|332653573|ref|ZP_08419318.1| cuticle collagen 3A3 [Ruminococcaceae bacterium D16]
gi|332518719|gb|EGJ48322.1| cuticle collagen 3A3 [Ruminococcaceae bacterium D16]
Length = 384
Score = 36.2 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 28/125 (22%), Gaps = 5/125 (4%)
Query: 71 SWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGS-YHNIFRIGTMLQNLNFWILNDI 129
W +SS + ++ W R N + W G + N + N+
Sbjct: 211 DWSHWSSGHRWCNWSY-WSSGRRWC---NWSYWSSGYRWCNWSYWSSGCCWCNWPYRTSG 266
Query: 130 VWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPIC 189
+ P + R +H + + +
Sbjct: 267 CHWYNRPHWSSGCRWHNWSHRSSGYCWCYRSHWSSGHCWPCRCNWPHRSYRACRCDWSCW 326
Query: 190 SGSER 194
R
Sbjct: 327 RHRPR 331
>gi|262165695|ref|ZP_06033432.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio mimicus
VM223]
gi|262025411|gb|EEY44079.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Vibrio mimicus
VM223]
Length = 617
Score = 36.2 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 21 DKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEA 80
+ I+ + + L DLIF DPP R + + F
Sbjct: 505 HQYIQADCLQWLAN-AQGQYDLIFIDPP----TFSNSKRMEQT-----------FDVQRD 548
Query: 81 YDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNF 140
+ +R+L+P GT+ + + LQ L + ++ PM
Sbjct: 549 HVTLMTN----LKRLLRPEGTIVFSNNKRHFKMDLEALQALELN--AQNISHQTLPMDFE 602
Query: 141 RGRRFQNAH 149
R ++ N
Sbjct: 603 RNKQIHNCW 611
>gi|303257607|ref|ZP_07343619.1| putative methyltransferase [Burkholderiales bacterium 1_1_47]
gi|302859577|gb|EFL82656.1| putative methyltransferase [Burkholderiales bacterium 1_1_47]
Length = 159
Score = 36.2 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 27 NSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTR 86
++ + + P S L+ DPP+ + D + + A+ +
Sbjct: 50 DARDL--EFPDNSFHLVILDPPHLINCGKT---SDMAKSYGYLEK--------AWHEDMK 96
Query: 87 AWLLACRRVLKPNGTLWV 104
RVL+PNGTL
Sbjct: 97 RIFNEAWRVLRPNGTLIF 114
>gi|123187376|gb|ABM69265.1| M2.BmrI [Bacillus megaterium]
Length = 504
Score = 36.2 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 217 LVSSTK--PGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIAT 262
+++ ++DPF GSGT+ +G+++ I IA
Sbjct: 113 ILNLFNIDENSNVIDPFSGSGTTILECSLQNIHAVGLDINPLAIFIAN 160
>gi|121533613|ref|ZP_01665440.1| protein of unknown function DUF1156 [Thermosinus carboxydivorans
Nor1]
gi|121307604|gb|EAX48519.1| protein of unknown function DUF1156 [Thermosinus carboxydivorans
Nor1]
Length = 932
Score = 36.2 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 214 SRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGN 273
I+ ++ + DPF G G+ A++L + ++ + I I + P
Sbjct: 103 KEIMKATNNNPPPVYDPFCGGGSIPLEAQRLGLAAYASDLNPVAVLITKALIE-IPPRFA 161
Query: 274 IELTVLTGKRTEPRVAFNLLVERGL 298
V R + GL
Sbjct: 162 GRAPVNPEARRQIGAGQGWQGAAGL 186
>gi|23099459|ref|NP_692925.1| caffeoyl-CoA O-methyltransferase [Oceanobacillus iheyensis HTE831]
gi|22777688|dbj|BAC13960.1| caffeoyl-CoA O-methyltransferase [Oceanobacillus iheyensis HTE831]
Length = 215
Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 22 KIIKGNSISVLEKLPAK--SVDLIFAD 46
K+I G+++ + +L D IF D
Sbjct: 104 KVIHGDALEEMSRLKENNERFDTIFID 130
>gi|312871966|ref|ZP_07732048.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Lactobacillus iners LEAF 2062A-h1]
gi|311092543|gb|EFQ50905.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Lactobacillus iners LEAF 2062A-h1]
Length = 279
Score = 36.2 bits (82), Expect = 8.8, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 2 SQKNSLAINENQNSIFEW-KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
S A+ +++ + ++ + II K +++ L + DLI ++PPY L
Sbjct: 142 SDITDSALRQSEENFLKFNLNDIITRKADALIGL-----EKFDLIISNPPYIKNSEKDLM 196
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ + + + Y F + + L +G ++ +
Sbjct: 197 DQNVIKNEPEEALFAGADGLDFYRRF----VKQVPKHLNKDGHFFLEFGF 242
>gi|32398799|emb|CAD98509.1| putative translation initiation factor if-2, 73082-68138, probable
[Cryptosporidium parvum]
Length = 836
Score = 36.2 bits (82), Expect = 8.8, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 26/100 (26%)
Query: 291 NLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSIHR-----------VGAKVS 339
+ VE G+++PG L D +I ++ V K+
Sbjct: 727 GVYVEEGILKPGTPL--------CIPEKDNLMIGRVTSVEFNKKPVNEGKKGQEVAVKIQ 778
Query: 340 GSETCNGWNF-WYFEKLGELH------SINTLRILVRKEL 372
+ + +F+ +L SI+ L+ R +L
Sbjct: 779 PFASDTNITYGRHFDHNDKLVSRITRDSIDILKQHFRDDL 818
>gi|289523746|ref|ZP_06440600.1| cyclin-dependent kinase inhibitor family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503438|gb|EFD24602.1| cyclin-dependent kinase inhibitor family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 937
Score = 36.2 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 27/113 (23%)
Query: 34 KLP--AKSVDLIFADPPY--NLQLNG-------QLYR---------------PDHSLVDA 67
LP D + DPPY N+ + L R P + A
Sbjct: 531 SLPYLDNYFDAVITDPPYYDNVPYSYLSDFFYVWLKRTVGDLYPELFATPLTPKSEEIVA 590
Query: 68 VTDSWDKFSSFEAYDAFTR-AWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQ 119
+ F + + RVLKP G ++ ++ + T++
Sbjct: 591 YSHKEGGFEGGKKFFEDMISKAFREIYRVLKPEGIAVIVFAHKSTDAWETIIN 643
>gi|217077926|ref|YP_002335644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus
TCF52B]
gi|217037781|gb|ACJ76303.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus
TCF52B]
Length = 440
Score = 36.2 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 2 SQKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPP 48
S S+ +I K+ K I+ +++ L ++ + D+I DPP
Sbjct: 324 SSHVSVKAGRANANINGLKNIKFIEADALDYLNQV-NEKFDVIVLDPP 370
>gi|217076536|ref|YP_002334252.1| ribosomal protein L11 methyltransferase [Thermosipho africanus
TCF52B]
gi|259534593|sp|B7IFP7|PRMA_THEAB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
Mtase
gi|217036389|gb|ACJ74911.1| ribosomal protein L11 methyltransferase [Thermosipho africanus
TCF52B]
Length = 260
Score = 36.2 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 10/132 (7%)
Query: 200 GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRR-SFIGIEMKQDYI 258
G LH T K L ++ L +PG +LD GS +AKKL +G++ +
Sbjct: 112 GTGLHDTTK---LSAKFLKKYLRPGMDVLDLGCGSAILSILAKKLGADRVLGVDNDPLAV 168
Query: 259 DIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCA 318
+ A + + N+++ + L+ +I +IL A ++ +
Sbjct: 169 EAAKENVER----NNVDVEIRQSDLFSNVDGKFDLIVSNIIA--EILIEALKDLPKFLKK 222
Query: 319 DGTLISGTELGS 330
DG +I + S
Sbjct: 223 DGVVILSGIIDS 234
>gi|14590840|ref|NP_142912.1| hypothetical protein PH0997 [Pyrococcus horikoshii OT3]
gi|3257411|dbj|BAA30094.1| 374aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 374
Score = 36.2 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASV 268
P L ++ S +LDPF G+GT + G ++++ + A K I +
Sbjct: 183 PPRLARVMVNLSEIRRGNVLDPFCGTGTIVMELTLQGLNAYGTDIEEGRVRDAKKNIDWL 242
Query: 269 QP 270
+
Sbjct: 243 RK 244
>gi|312873846|ref|ZP_07733889.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Lactobacillus iners LEAF 2052A-d]
gi|311090628|gb|EFQ49029.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Lactobacillus iners LEAF 2052A-d]
Length = 279
Score = 36.2 bits (82), Expect = 9.1, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 2 SQKNSLAINENQNSIFEW-KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
S A+ +++ + ++ + II K +++ L + DLI ++PPY L
Sbjct: 142 SDITDSALRQSEENFLKFNLNDIITRKADALIGL-----EKFDLIISNPPYIKNSEKDLM 196
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ + + + Y F + + L +G ++ +
Sbjct: 197 DQNVIKNEPEEALFAGADGLDFYRRF----VKQVPKHLNKDGHFFLEFGF 242
>gi|296126693|ref|YP_003633945.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Brachyspira murdochii DSM 12563]
gi|296018509|gb|ADG71746.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Brachyspira murdochii DSM 12563]
Length = 287
Score = 36.2 bits (82), Expect = 9.1, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
++ KN+ I ++ I II + L+ +P K D+I ++ PY + L +
Sbjct: 157 ITNKNAFNILGDEKFIN-----IINAD---ALKYIPEKKFDIIVSNAPY-VPLKDKDSLQ 207
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
+ + S + F RA+L LK NG + Y+ + + +
Sbjct: 208 KDLDFEPFNALY----SGDDGLDFYRAFLNIIDIYLKDNGAFFFEIGYNQAYSLIDIC 261
>gi|116495566|ref|YP_807300.1| cyclopropane fatty acid synthase-like protein [Lactobacillus casei
ATCC 334]
gi|191639048|ref|YP_001988214.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
BL23]
gi|301067104|ref|YP_003789127.1| cyclopropane fatty acid synthase-like methyltransferase
[Lactobacillus casei str. Zhang]
gi|116105716|gb|ABJ70858.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
ATCC 334]
gi|190713350|emb|CAQ67356.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
BL23]
gi|300439511|gb|ADK19277.1| Cyclopropane fatty acid synthase related methyltransferase
[Lactobacillus casei str. Zhang]
gi|327383108|gb|AEA54584.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
LC2W]
gi|327386292|gb|AEA57766.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
BD-II]
Length = 393
Score = 36.2 bits (82), Expect = 9.2, Method: Composition-based stats.
Identities = 41/222 (18%), Positives = 66/222 (29%), Gaps = 22/222 (9%)
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
M N + RF S Y D K + S S
Sbjct: 92 MRNKKLMRFLPKQSHTEHKSKEDIHSHYDLGNDFYKLWLDPTLTYSCAYFEDWSDDLETA 151
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQ 255
+ + H +K + +PG +LD G GT AK +GI + +
Sbjct: 152 QLN-KIDHILRK----------LNPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSK 200
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISA 314
+ + + RI S E+ R R F+ + G+ + G+ A
Sbjct: 201 EQFKLVSDRIESEHLSDVAEVL-YMDYRELNREPFDYITSVGMFEHVGKENLEGYFKDVA 259
Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
+ D + IH + + G+ N W Y G
Sbjct: 260 KLLKDDGVAL------IHGITRQQGGA--VNAWINKYIFPDG 293
>gi|297180021|gb|ADI16246.1| N6-adenine-specific methylase [uncultured bacterium HF0010_16H03]
Length = 186
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 6 SLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
+L++N + ++ + K KI ++ + ++ +DLIF DPP+N
Sbjct: 83 ALSLNLKKLNVKD-KSKIFFKDAYTWIKHYDLSEIDLIFLDPPFN 126
>gi|300854061|ref|YP_003779045.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
ljungdahlii DSM 13528]
gi|300434176|gb|ADK13943.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
ljungdahlii DSM 13528]
Length = 450
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 4 KNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPP 48
+ ++A + K+ + I G+ VL L K D+I DPP
Sbjct: 339 EKAVASANENAKLNNIKNCRFIAGDVKDVLNTLEDKP-DIIILDPP 383
>gi|19704666|ref|NP_604228.1| methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714974|gb|AAL95527.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 354
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 2 SQKNSLAINENQNSI---FEWKDKIIKGNSIS--VLEKLPAK-SVDLIFADPPYNLQLNG 55
S + INE + + +KI N I + KL DLI ++PPY +
Sbjct: 191 SSVTGIDINEKAIKLAIENKILNKIENVNFIESNLFGKLDKDFKYDLIVSNPPYISKDEY 250
Query: 56 QLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIG 115
+ P+ + D F + LK G L Y+ +
Sbjct: 251 ETLMPEVKNYEPQNALTDLGDG----LHFYKEISKLAGEYLKDTGYLAFEIGYNQAKDVS 306
Query: 116 TMLQNLNF 123
+LQ+ NF
Sbjct: 307 KILQDNNF 314
>gi|239629965|ref|ZP_04672996.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|239527577|gb|EEQ66578.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
paracasei subsp. paracasei 8700:2]
Length = 393
Score = 36.2 bits (82), Expect = 9.4, Method: Composition-based stats.
Identities = 41/222 (18%), Positives = 66/222 (29%), Gaps = 22/222 (9%)
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
M N + RF S Y D K + S S
Sbjct: 92 MRNKKLMRFLPKQSHTEHKSKEDIHSHYDLGNDFYKLWLDPTLTYSCAYFEDWSDDLETA 151
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQ 255
+ + H +K + +PG +LD G GT AK +GI + +
Sbjct: 152 QLN-KIDHILRK----------LNPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSK 200
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISA 314
+ + + RI S E+ R R F+ + G+ + G+ A
Sbjct: 201 EQFKLVSDRIESEHLSDVAEVL-YMDYRELNREPFDYITSVGMFEHVGKENLEGYFKDVA 259
Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
+ D + IH + + G+ N W Y G
Sbjct: 260 KLLKDDGVAL------IHGITRQQGGA--VNAWINKYIFPDG 293
>gi|312874596|ref|ZP_07734620.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Lactobacillus iners LEAF 2053A-b]
gi|311089826|gb|EFQ48246.1| protein-(glutamine-N5) methyltransferase, release factor-specific
[Lactobacillus iners LEAF 2053A-b]
Length = 279
Score = 36.2 bits (82), Expect = 9.5, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 2 SQKNSLAINENQNSIFEW-KDKII--KGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLY 58
S A+ +++ + ++ + II K +++ L + DLI ++PPY L
Sbjct: 142 SDITDSALRQSEENFLKFNLNDIITRKADALIGL-----EKFDLIISNPPYIKNSEKDLM 196
Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSY 108
+ + + + Y F + + L +G ++ +
Sbjct: 197 DQNVIKNEPEEALFAGADGLDFYRRF----VKQVPKHLNKDGHFFLEFGF 242
>gi|270488030|ref|ZP_06205104.1| conserved domain protein [Yersinia pestis KIM D27]
gi|270336534|gb|EFA47311.1| conserved domain protein [Yersinia pestis KIM D27]
Length = 263
Score = 36.2 bits (82), Expect = 9.5, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTK 222
+ D V S S R + + +P A+ ++ + +
Sbjct: 1 MNDIDKDNMLLNKVISNSKGDKAYWSFKGRAKRQYCHALIQYPAMMVPAMQGELIDAVLE 60
Query: 223 PGDII---LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ +DPF GSGT+ A + F+G+++ I
Sbjct: 61 IDSNVTSIIDPFVGSGTTLGEAMRRGLDFVGMDINPLSILAC 102
>gi|167426029|ref|ZP_02317782.1| modification methylase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167054952|gb|EDR64752.1| modification methylase [Yersinia pestis biovar Mediaevalis str.
K1973002]
Length = 439
Score = 36.2 bits (82), Expect = 9.5, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 211 ALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
L+ +L + II DPF GSGT+ A + F+G+++ I
Sbjct: 51 ELIDAVLEIDSNVTSII-DPFVGSGTTLGEAMRRGLDFVGMDINPLSILAC 100
>gi|270692619|ref|ZP_06222931.1| putative methylase [Haemophilus influenzae HK1212]
gi|270316046|gb|EFA28075.1| putative methylase [Haemophilus influenzae HK1212]
Length = 144
Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 11/125 (8%)
Query: 39 SVDLIFADPPYNLQL-----------NGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRA 87
L+ AD PYNL NG + ++ DK + F
Sbjct: 20 KAQLVIADIPYNLGNNAYASNPEWYVNGDNKNGESDKANSSFFDTDKDFRIAEFMHFCSK 79
Query: 88 WLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQN 147
L+ ++ + V ++ I + + F +V+ KS+ + R +
Sbjct: 80 MLIKEQKERGKAPCMIVFCAFQQIPMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANRKSS 139
Query: 148 AHETL 152
A + +
Sbjct: 140 AQQNM 144
>gi|291613556|ref|YP_003523713.1| Excinuclease ABC C subunit domain protein [Sideroxydans
lithotrophicus ES-1]
gi|291583668|gb|ADE11326.1| Excinuclease ABC C subunit domain protein [Sideroxydans
lithotrophicus ES-1]
Length = 230
Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 308 AQGNISATVCADGTLISGTELGSIHRVGAK-VSGSETCNGWNFWYFEKL-GELHSINTLR 365
AT+ DG + T+ AK + NGW FW ++ GE ++ LR
Sbjct: 170 KDKQYRATLRKDGLICFNTKQYESPTAAAKMIIKGRAVNGWVFWKYQNDAGEWVPLSRLR 229
Query: 366 I 366
Sbjct: 230 K 230
>gi|332159201|ref|YP_004424480.1| DNA methylase containing a Zn-ribbon module [Pyrococcus sp. NA2]
gi|331034664|gb|AEC52476.1| DNA methylase containing a Zn-ribbon module [Pyrococcus sp. NA2]
Length = 890
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 6/138 (4%)
Query: 169 DALKAANEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGDIIL 228
D + + + E L+ ++ H LL + + + +L
Sbjct: 58 DEMPWKIDPKAYDDLEKARYANFVELLKLNKEKRAHNYDPDRGLLLKAIKKTWGEVPEVL 117
Query: 229 DPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIE--LTVLTGKRTEP 286
DPF G+G+ ++ + DY +A + + KR
Sbjct: 118 DPFAGAGSIPFEVLRVG----TSVVANDYNPVAYLILKATLEYPKKYGWKLYEDVKRYAN 173
Query: 287 RVAFNLLVERGLIQPGQI 304
++ L E G + P
Sbjct: 174 QILNELKEELGHLYPKHN 191
>gi|325977803|ref|YP_004287519.1| hypothetical protein SGGBAA2069_c06030 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|325177731|emb|CBZ47775.1| hypothetical protein SGGBAA2069_c06030 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 249
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 15/144 (10%)
Query: 3 QKNSLAINENQNSIFEWKDK--IIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
Q+ + E + + +++ II + ++L +P VDLI +PPY
Sbjct: 78 QERLANMAERSIQLNQLENQVQIINDDLKNLLNHVPRSGVDLILCNPPYF-------KVS 130
Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
+ S + R LK NG L ++ H R ++
Sbjct: 131 ETSKKNLSEHYLLARHEIATNLEEICEV---ARHALKSNGRLAMV---HRPDRFLDIIDT 184
Query: 121 LNFWILNDIVWRKSNPMPNFRGRR 144
+ + L + P
Sbjct: 185 MRQYNLAPKRIQFVYPKMGKDANM 208
>gi|269127615|ref|YP_003300985.1| translation elongation factor Ts [Thermomonospora curvata DSM
43183]
gi|268312573|gb|ACY98947.1| translation elongation factor Ts [Thermomonospora curvata DSM
43183]
Length = 278
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 224 GDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTGKR 283
++ + F GSG + F + +I++A + + ++ L G
Sbjct: 59 NGLVAEYFQGSGDGAILELNCETDF--VAKNAGFIELADRIVKFAAESDAPDVPTLLGME 116
Query: 284 TEPRVAFNLLVERGLIQPGQIL 305
EP L+E + G+ L
Sbjct: 117 IEPGKTVQALIEENSAKIGEKL 138
>gi|222147713|ref|YP_002548670.1| hypothetical protein Avi_0945 [Agrobacterium vitis S4]
gi|221734701|gb|ACM35664.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 242
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 35 LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRR 94
LP + D + +PP+N + PD +A D F WL
Sbjct: 98 LPDDAFDHVIMNPPFNDGRD--RTTPDSLKAEAHAMDGDMFE----------RWLRTAGA 145
Query: 95 VLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVW 131
++KP G L +I ++ I I ++
Sbjct: 146 IMKPGGQLSLIARPQSVAEIIAACGKRFGGIEITLIH 182
>gi|256375106|ref|YP_003098766.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
gi|255919409|gb|ACU34920.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
Length = 677
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 209 PEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKL--RRSFIGIEMKQDYIDIATKRIA 266
P L +R++V T+P + DP G+G A + +G E+ +A R+A
Sbjct: 143 PREL-ARLMVDLTEPHGTVFDPACGTGALLRAAVRSEPGIRPVGQELDPSLAQVAIARLA 201
Query: 267 SVQPLGNIELTVLTGKRTEPRVAFNLLVER 296
++ P + +++V
Sbjct: 202 FAAGEASVRSGDSLRNDAFPELVADVVVSN 231
>gi|251779695|ref|ZP_04822615.1| O-methyltransferase family protein [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084010|gb|EES49900.1| O-methyltransferase family protein [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 214
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFAD 46
+N + ++ + KI +G+ + VLEKL + DLIF D
Sbjct: 97 KLNLKKFNLEDKI-KIEQGDCLEVLEKL-KEPFDLIFMD 133
>gi|304383992|ref|ZP_07366448.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Prevotella marshii DSM 16973]
gi|304334884|gb|EFM01158.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
[Prevotella marshii DSM 16973]
Length = 414
Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 204 HPTQKPEALLSRILVSSTKPG--DIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+P + ++ G ++ILDP+ GSGT+ A + +G ++ +
Sbjct: 27 YPAMMIPQIARTLIDEYRPEGRLELILDPYMGSGTTLVEASLAGINSVGTDLNPLARLMG 86
Query: 262 TKRIASVQ 269
+
Sbjct: 87 KVKTTHYN 94
>gi|227533882|ref|ZP_03963931.1| possible cyclopropane-fatty-acyl-phospholipid synthase
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227188518|gb|EEI68585.1| possible cyclopropane-fatty-acyl-phospholipid synthase
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 393
Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats.
Identities = 41/222 (18%), Positives = 66/222 (29%), Gaps = 22/222 (9%)
Query: 137 MPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMRSDWLIPICSGSERLR 196
M N + RF S Y D K + S S
Sbjct: 92 MRNKKLMRFLPKQSHTEHKSKEDIHSHYDLGNDFYKLWLDPTLTYSCAYFEDWSDDLETA 151
Query: 197 NKDGEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQ 255
+ + H +K + +PG +LD G GT AK +GI + +
Sbjct: 152 QLN-KIDHILRK----------LNPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSK 200
Query: 256 DYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGLIQ-PGQILTNAQGNISA 314
+ + + RI S E+ R R F+ + G+ + G+ A
Sbjct: 201 EQFKLVSDRIESEHLSDVAEVL-YMDYRELNREPFDYITSVGMFEHVGKENLEGYFKDVA 259
Query: 315 TVCADGTLISGTELGSIHRVGAKVSGSETCNGWNFWYFEKLG 356
+ D + IH + + G+ N W Y G
Sbjct: 260 KLLKDDGVAL------IHGITRQQGGA--VNAWINKYIFPDG 293
>gi|45443522|ref|NP_995061.1| modification methylase [Yersinia pestis biovar Microtus str. 91001]
gi|229837035|ref|ZP_04457200.1| modification methylase [Yersinia pestis Pestoides A]
gi|45438391|gb|AAS63938.1| modification methylase [Yersinia pestis biovar Microtus str. 91001]
gi|229705978|gb|EEO91987.1| modification methylase [Yersinia pestis Pestoides A]
Length = 443
Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTK 222
+ D V S S R + + +P A+ ++ + +
Sbjct: 1 MNDIDKDNMLLNKVISNSKGDKAYWSFKGRAKRQYCHALIQYPAMMVPAMQGELIDAVLE 60
Query: 223 PGDII---LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ +DPF GSGT+ A + F+G+++ I
Sbjct: 61 IDSNVTSIIDPFVGSGTTLGEAMRRGLDFVGMDINPLSILAC 102
>gi|268569042|ref|XP_002648161.1| Hypothetical protein CBG24243 [Caenorhabditis briggsae]
gi|187040343|emb|CAP20899.1| hypothetical protein CBG_24243 [Caenorhabditis briggsae AF16]
Length = 790
Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 9/145 (6%)
Query: 58 YRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL------WVIGSYHNI 111
+R S W S ++ W+ + ++ + W + I
Sbjct: 9 WRWIQSRYSWTRSRWGWIQSRYSWTRSRWRWIQSRYSWIRSKYSWTQSRYSWTQSMWRRI 68
Query: 112 FRIGTMLQNLNFWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDAL 171
+ ++ WI + W +S + + I + Y +
Sbjct: 69 QSRYSWTRSRWRWIQSRYSWTRSMCRWIQSRYSWTRSRCRWIQSRYWWTRSRYWWTRSRC 128
Query: 172 KAANEDVQMRSDWLIPICSGSERLR 196
+ S R R
Sbjct: 129 RWIQ---SRCSWIRSRYWWTRSRCR 150
>gi|22127663|ref|NP_671086.1| modification methylase [Yersinia pestis KIM 10]
gi|108809883|ref|YP_653799.1| modification methylase [Yersinia pestis Antiqua]
gi|108810428|ref|YP_646195.1| modification methylase [Yersinia pestis Nepal516]
gi|150260566|ref|ZP_01917294.1| modification methylase [Yersinia pestis CA88-4125]
gi|162421405|ref|YP_001605783.1| modification methylase [Yersinia pestis Angola]
gi|165927281|ref|ZP_02223113.1| modification methylase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165936505|ref|ZP_02225073.1| modification methylase [Yersinia pestis biovar Orientalis str.
IP275]
gi|166008830|ref|ZP_02229728.1| modification methylase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211979|ref|ZP_02238014.1| modification methylase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167400589|ref|ZP_02306098.1| modification methylase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167419155|ref|ZP_02310908.1| modification methylase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167467845|ref|ZP_02332549.1| modification methylase [Yersinia pestis FV-1]
gi|218927593|ref|YP_002345468.1| modification methylase [Yersinia pestis CO92]
gi|229840267|ref|ZP_04460426.1| modification methylase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229842345|ref|ZP_04462500.1| modification methylase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900610|ref|ZP_04515734.1| modification methylase [Yersinia pestis Nepal516]
gi|294502496|ref|YP_003566558.1| modification methylase [Yersinia pestis Z176003]
gi|21960778|gb|AAM87337.1|AE013982_4 putative methyltransferase [Yersinia pestis KIM 10]
gi|108774076|gb|ABG16595.1| modification methylase [Yersinia pestis Nepal516]
gi|108781796|gb|ABG15854.1| modification methylase [Yersinia pestis Antiqua]
gi|115346204|emb|CAL19072.1| modification methylase [Yersinia pestis CO92]
gi|149289974|gb|EDM40051.1| modification methylase [Yersinia pestis CA88-4125]
gi|162354220|gb|ABX88168.1| modification methylase [Yersinia pestis Angola]
gi|165915621|gb|EDR34230.1| modification methylase [Yersinia pestis biovar Orientalis str.
IP275]
gi|165920743|gb|EDR37991.1| modification methylase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165992169|gb|EDR44470.1| modification methylase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166206725|gb|EDR51205.1| modification methylase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166963149|gb|EDR59170.1| modification methylase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167049957|gb|EDR61365.1| modification methylase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|229681949|gb|EEO78041.1| modification methylase [Yersinia pestis Nepal516]
gi|229690655|gb|EEO82709.1| modification methylase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229696633|gb|EEO86680.1| modification methylase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|262360527|gb|ACY57248.1| modification methylase [Yersinia pestis D106004]
gi|262364473|gb|ACY61030.1| modification methylase [Yersinia pestis D182038]
gi|294352955|gb|ADE63296.1| modification methylase [Yersinia pestis Z176003]
gi|320017052|gb|ADW00624.1| modification methylase [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 441
Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 165 TFNYDALKAANEDVQMRSDWLIPICSGSERLRNK--DGEKLHPTQKPEALLSRILVSSTK 222
+ D V S S R + + +P A+ ++ + +
Sbjct: 1 MNDIDKDNMLLNKVISNSKGDKAYWSFKGRAKRQYCHALIQYPAMMVPAMQGELIDAVLE 60
Query: 223 PGDII---LDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIA 261
+ +DPF GSGT+ A + F+G+++ I
Sbjct: 61 IDSNVTSIIDPFVGSGTTLGEAMRRGLDFVGMDINPLSILAC 102
>gi|187933903|ref|YP_001885380.1| O-methyltransferase family protein [Clostridium botulinum B str.
Eklund 17B]
gi|187722056|gb|ACD23277.1| O-methyltransferase family protein [Clostridium botulinum B str.
Eklund 17B]
Length = 214
Score = 35.8 bits (81), Expect = 9.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 4 KNSLAINENQNSIFEWKDKI-I-KGNSISVLEKLPAKSVDLIFAD 46
+ + + F ++KI I +G+ + VLEKL + DLIF D
Sbjct: 90 EKMIEFAKLNLKKFNLENKIKIEQGDCLEVLEKL-EEPFDLIFMD 133
>gi|257467858|ref|ZP_05631954.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|317062147|ref|ZP_07926632.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
gi|313687823|gb|EFS24658.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
Length = 372
Score = 35.8 bits (81), Expect = 10.0, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 8/125 (6%)
Query: 3 QKNSLAINENQNSIFEWKD-KIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPD 61
+ +L + + + + ++ K IK + V DLI ++PPY P+
Sbjct: 234 SEGALEVAKANGELNKIENVKFIKSD---VFSSFKDMKFDLIVSNPPYIPLEEYNELMPE 290
Query: 62 HSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNL 121
+ + D + + F L G L Y+ + +++
Sbjct: 291 VLNYEPSSALTDNGNGYY----FYSKISKEACDYLNEGGFLAFEVGYNQAEVVKELMEEN 346
Query: 122 NFWIL 126
F +L
Sbjct: 347 GFDVL 351
>gi|258514700|ref|YP_003190922.1| hypothetical protein Dtox_1426 [Desulfotomaculum acetoxidans DSM
771]
gi|257778405|gb|ACV62299.1| hypothetical protein Dtox_1426 [Desulfotomaculum acetoxidans DSM
771]
Length = 432
Score = 35.8 bits (81), Expect = 10.0, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 37 AKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
SVD I PPY +++ +Y + TD
Sbjct: 248 NNSVDFIITSPPYCTRIDYAVYTKVELSLLGYTDQ 282
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.136 0.402
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,941,426,444
Number of Sequences: 14124377
Number of extensions: 124951600
Number of successful extensions: 428889
Number of sequences better than 10.0: 5640
Number of HSP's better than 10.0 without gapping: 4366
Number of HSP's successfully gapped in prelim test: 1274
Number of HSP's that attempted gapping in prelim test: 415615
Number of HSP's gapped (non-prelim): 8935
length of query: 375
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 234
effective length of database: 2,851,256,473
effective search space: 667194014682
effective search space used: 667194014682
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 82 (36.2 bits)