RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus str. psy62] (375 letters) >gnl|CDD|144957 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. Length = 221 Score = 234 bits (600), Expect = 2e-62 Identities = 100/239 (41%), Positives = 132/239 (55%), Gaps = 33/239 (13%) Query: 40 VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99 VDLI DPPYNL + WD S+E Y + WL RRVLKP Sbjct: 1 VDLIVTDPPYNLGKDY--------------GQWDDKDSYEEYLEWLEEWLKEVRRVLKPG 46 Query: 100 GTLWVIGSYHNIF-RIGTMLQNLN-FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157 G++++ I L+ L F +LNDI+WRK N MPN G RF AHE ++W S Sbjct: 47 GSIFINIGDKYIKSLKALALEILGIFKLLNDIIWRKPNGMPNSNGERFTPAHEYILWFSK 106 Query: 158 SPKAKGYTFNYDALKAANEDVQMRSD-------------WLIPICSGSERLRNKDGEKLH 204 + K YTFNYDA+K ++ W P SE+ G H Sbjct: 107 TKKY--YTFNYDAIKVPYDEKDKLKKRGSEPNGKPIGDVWDFPRVQPSEK--ESGGNGAH 162 Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263 PTQKPEALL R++++ST PGDI+LDPF GSGT+GA AK+L R+FIGIE++++Y++IA + Sbjct: 163 PTQKPEALLERLILASTNPGDIVLDPFAGSGTTGAAAKELGRNFIGIEIEEEYVEIAKE 221 >gnl|CDD|31203 COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]. Length = 302 Score = 216 bits (550), Expect = 9e-57 Identities = 101/287 (35%), Positives = 147/287 (51%), Gaps = 9/287 (3%) Query: 18 EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77 + KI KG+ + +L+ LP SVDLIF DPPYN G+ +DA D WD Sbjct: 14 DELSKIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAW-DGWDSRGI 72 Query: 78 FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137 + + WL +RVLKP G+L+VI + N+ RI + + L F IL I+W+K +P Sbjct: 73 YLKFILL--QWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEILGKIIWKKPSPR 130 Query: 138 PNFRGRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRSDWLI----PICSGS 192 + + +E LIWA+ S K F D + ED+++R + P G+ Sbjct: 131 NSRIAKYLLFDYEPLIWANNKSDKLNVDKFKEDIVLDPFEDLRIREPYNKLIRLPDKKGN 190 Query: 193 ERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251 G+KLHP QKP AL+ R++ + PGDI+LDPF GSGT+G AK L R FIGI Sbjct: 191 WSNPIDSYGKKLHPAQKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGI 250 Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298 E+ +Y+++A KR+ I + +R + L E + Sbjct: 251 EINPEYVEVALKRLQEGLNRIPILIKNRVEERGSFVIESFYLEEGVI 297 >gnl|CDD|32372 COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]. Length = 590 Score = 54.0 bits (129), Expect = 6e-08 Identities = 30/63 (47%), Positives = 40/63 (63%) Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265 KPEALL RI+ +T D++LD F GSGT+ AVA KL R +IGIE + +I +R+ Sbjct: 436 RGKPEALLQRIIKITTNKNDLVLDFFAGSGTTTAVAHKLNRKYIGIEQMEYIENIILERL 495 Query: 266 ASV 268 V Sbjct: 496 KKV 498 Score = 36.7 bits (84), Expect = 0.010 Identities = 63/398 (15%), Positives = 114/398 (28%), Gaps = 74/398 (18%) Query: 2 SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIF---ADPPYNLQLNGQLY 58 ++K L E K+ II + + L + +D + DPPY N + Sbjct: 104 AEKAFLDAKRLTQEANENKNDIIYIDPLIALSSDYLRYLDKVKLIYIDPPYETGNNDRFL 163 Query: 59 RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118 D +W F L +++LK +G + + N +L Sbjct: 164 YNDKFN----GSTWLSFMYNR---------LELAKKLLKDDGVI-FVSIDDNEQAYLKVL 209 Query: 119 QNLNF---WILNDIVWRKSNPMPNFRGRRFQNAHE-TLIWASPS---------------- 158 + F + +I+W+K N + + HE L++A Sbjct: 210 MDEIFGEENFITNIIWKKKNSSGSDSNKFVYIDHEYILVYAKNKYNRLELELEELDRQGN 269 Query: 159 -PKAKGYTFNYDALKAANEDVQ-----------------MRSDWLIPICSGSERLRNKDG 200 NY NE + + Sbjct: 270 IYVIYDENDNYLKKNKLNEIFRKINFKNKIIGKPFNGSGRIWANFKKYLIKGLKADQNYN 329 Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-D 259 + +P P L + K + ++DP G+GT+ + + + + Sbjct: 330 DNGYPRYYPFNLRYKKEKLDKKSKNRVIDPINGNGTTYGETARRKGYNDLKYIIKSIKEV 389 Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRV--------AFNLLVERGLIQPGQIL------ 305 K +V L + L G T NL ++ +P +L Sbjct: 390 KIEKNPKAVPYLNDRILDYFAGDFTTAHAVSYWNKEDKGNLGIDFKRGKPEALLQRIIKI 449 Query: 306 TNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSET 343 T + ++ A SGT H++ K G E Sbjct: 450 TTNKNDLVLDFFAG----SGTTTAVAHKLNRKYIGIEQ 483 >gnl|CDD|32591 COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]. Length = 287 Score = 40.7 bits (95), Expect = 6e-04 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 27/95 (28%) Query: 8 AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67 +N +FE KII G++ V++ +S D I DPP L G+LY Sbjct: 174 KLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPP-RFSLAGELY--------- 223 Query: 68 VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102 S E Y R+LK G L Sbjct: 224 ---------SEEFYRELY--------RILKRGGRL 241 >gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]. Length = 248 Score = 38.7 bits (90), Expect = 0.003 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 18/123 (14%) Query: 1 MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60 M+Q+N +A+N + I ++I+ + L+ L S DLI +PPY Q +L Sbjct: 83 MAQRN-VALNPLEERI-----QVIEADIKEFLKALVFASFDLIICNPPYFKQ-GSRLNEN 135 Query: 61 DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120 + E + A ++LKP G L + + I +L++ Sbjct: 136 PLR----------AIARHEITLDL-EDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKS 184 Query: 121 LNF 123 N Sbjct: 185 YNL 187 >gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]. Length = 187 Score = 35.2 bits (81), Expect = 0.030 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 8 AINENQNSI-FEWKDKIIKGNSISVLEKLPAKSV-DLIFADPPYNLQL 53 + EN ++ E + ++++ +++ L++L + DL+F DPPY L Sbjct: 81 ILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGL 128 >gnl|CDD|31243 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair]. Length = 347 Score = 34.9 bits (80), Expect = 0.041 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 9/48 (18%) Query: 198 KDGEKLHPTQKP-------EALLSRILV--SSTKPGDIILDPFFGSGT 236 K EK P ++P + L+R +V + K G+++LDPF G+G Sbjct: 163 KAFEKRDPEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGG 210 >gnl|CDD|110191 pfam01170, UPF0020, Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 171 Score = 33.8 bits (78), Expect = 0.077 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 203 LHPTQKPEALLSRILVSST--KPGDIILDPFFGSGT 236 P L +R +V+ KPGD +LDPF GSGT Sbjct: 7 NGPAPLKATL-ARAMVNLAGWKPGDPLLDPFCGSGT 41 >gnl|CDD|146308 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95. Length = 181 Score = 33.0 bits (76), Expect = 0.13 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 21 DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQL 53 +++ ++ L +L K DL+F DPPY L Sbjct: 93 GAVLRMDAARALLRLAGKGPPFDLVFLDPPYAKGL 127 >gnl|CDD|31289 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]. Length = 393 Score = 32.2 bits (73), Expect = 0.26 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 25/105 (23%) Query: 11 ENQ--NSIFEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVD 66 EN N + + + I G+ L K + DLI DPP Sbjct: 258 ENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPP------------------ 299 Query: 67 AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111 + + K F A + R+L P GTL + Sbjct: 300 --SFARSKKQEFSAQRDYKDL-NDLALRLLAPGGTLVTSSCSRHF 341 >gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 Score = 31.4 bits (72), Expect = 0.42 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 25/79 (31%) Query: 31 VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90 + + DLI ++PP+ H+ D +F + Sbjct: 90 LYSAVEPGKFDLIISNPPF------------HAGKATDYDVAQRF-------------IA 124 Query: 91 ACRRVLKPNGTLWVIGSYH 109 R LKP G LW++ + H Sbjct: 125 GAARHLKPGGELWIVANRH 143 >gnl|CDD|37439 KOG2228, KOG2228, KOG2228, Origin recognition complex, subunit 4 [Replication, recombination and repair]. Length = 408 Score = 31.1 bits (70), Expect = 0.57 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 15 SIFEWKDKIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71 + KI + +SVLE + K LI +N L +R + ++ Sbjct: 281 RQYSVDPKIELLSGLSVLELYLIICMKRETLIAELNSFNFNLVYAEFRKFIKSIAHTSEL 340 Query: 72 WDKFSSFEAYDAFTRAWLL 90 W K A++ L+ Sbjct: 341 WAKTVVLNAFEHLRSLELI 359 >gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]. Length = 432 Score = 30.7 bits (69), Expect = 0.67 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 223 PGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281 G+ +LD + G GT G +AK++++ G+E+ + ++ A + A+ + N+E Sbjct: 293 GGERVLDLYCGVGTFGLPLAKRVKKV-HGVEISPEAVEAA-QENAAANGIDNVEFIAGDA 350 Query: 282 KR 283 + Sbjct: 351 EE 352 >gnl|CDD|35394 KOG0173, KOG0173, KOG0173, 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]. Length = 271 Score = 30.3 bits (68), Expect = 0.84 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331 N+EL L R +PRV L + + Q L QG+I A + G +G L SI Sbjct: 98 SNLELHRLNTGR-KPRVVTALRMLK------QHLFRYQGHIGAALILGGVDPTGPHLYSI 150 Query: 332 HRVGA 336 H G+ Sbjct: 151 HPHGS 155 >gnl|CDD|32590 COG2520, COG2520, Predicted methyltransferase [General function prediction only]. Length = 341 Score = 29.9 bits (67), Expect = 1.1 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 215 RILVSSTKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIE 252 + K G+ +LD F G G S +AKK R I+ Sbjct: 180 ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAID 218 >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).. Length = 107 Score = 29.7 bits (67), Expect = 1.3 Identities = 17/94 (18%), Positives = 23/94 (24%), Gaps = 14/94 (14%) Query: 26 GNSISVLEKLPAKSVDLIFADPP-----YNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-- 78 G L P V + P + DA + SF Sbjct: 10 GALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDV 69 Query: 79 -------EAYDAFTRAWLLACRRVLKPNGTLWVI 105 +L RR+LKP G L + Sbjct: 70 IISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 >gnl|CDD|38115 KOG2904, KOG2904, KOG2904, Predicted methyltransferase [General function prediction only]. Length = 328 Score = 29.6 bits (66), Expect = 1.4 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 18/78 (23%) Query: 33 EKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85 L +DL+ ++PPY L+ +LY P +L E YD Sbjct: 216 HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALD----------GGLEGYDNLV 265 Query: 86 RAWLLACRRVLKPNGTLW 103 WLLA R+L+P G Sbjct: 266 HYWLLAT-RMLQPGGFEQ 282 >gnl|CDD|111931 pfam03090, Replicase, Replicase family. This is a family of bacterial plasmid DNA replication initiator proteins. Pfam: PF01051 is a similar family. These RepA proteins exist as monomers and dimers in equilibrium: monomers bind directly to repeated DNA sequences and thus activate replication; dimers repress repA transcription by binding an inversely repeated DNA operator. Dimer dissociation can occur spontaneously or be mediated by Hsp70 chaperones. Length = 137 Score = 29.2 bits (66), Expect = 1.8 Identities = 10/29 (34%), Positives = 13/29 (44%) Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSP 159 + P PN+ R N H LIW +P Sbjct: 44 EDEGLPAPNWIVRNPANGHAHLIWLLDAP 72 >gnl|CDD|37882 KOG2671, KOG2671, KOG2671, Putative RNA methylase [Replication, recombination and repair]. Length = 421 Score = 29.1 bits (65), Expect = 2.2 Identities = 10/15 (66%), Positives = 13/15 (86%) Query: 222 KPGDIILDPFFGSGT 236 KPGDI+ DPF G+G+ Sbjct: 207 KPGDIVYDPFVGTGS 221 >gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]. Length = 280 Score = 28.4 bits (63), Expect = 3.0 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 17/99 (17%) Query: 38 KSVDLIFADPPY------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91 DLI ++PPY L Y P +LV R L Sbjct: 175 GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALV-----------GGGDGLEVYRRILGE 223 Query: 92 CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130 +LKP G L + + + ++ F+ + + + Sbjct: 224 APDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETL 262 >gnl|CDD|30835 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]. Length = 265 Score = 28.1 bits (62), Expect = 4.0 Identities = 11/41 (26%), Positives = 17/41 (41%) Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225 L+P + SE LR + + + I V+S K G Sbjct: 29 LLPKSTASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGV 69 >gnl|CDD|37398 KOG2187, KOG2187, KOG2187, tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]. Length = 534 Score = 28.0 bits (62), Expect = 4.7 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Query: 222 KPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATK 263 +LD G+GT G A+A+ ++R IG+E+ D ++ A K Sbjct: 382 PADKTLLDVCCGTGTIGLALARGVKRV-IGVEISPDAVEDAEK 423 >gnl|CDD|30465 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]. Length = 381 Score = 28.0 bits (62), Expect = 5.0 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 10/83 (12%) Query: 216 ILVSSTKPGDIILDPFFGSGT--------SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267 +L++ KP + +LDP GSGT + +A L R F D+ K Sbjct: 184 LLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREE 243 Query: 268 VQPLGNI--ELTVLTGKRTEPRV 288 + EL ++ G +PR Sbjct: 244 AEERARRGKELPIIYGSDIDPRH 266 >gnl|CDD|145489 pfam02369, Big_1, Bacterial Ig-like domain (group 1). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity. Length = 93 Score = 27.4 bits (61), Expect = 5.9 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 8/47 (17%) Query: 297 GLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSET 343 L + T+A G + T+ + T+ G+ + V A ++ T Sbjct: 48 TLSNGNKATTDANGVATVTL-------TSTKAGT-YTVTASLANGAT 86 >gnl|CDD|111238 pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain. Length = 808 Score = 27.4 bits (61), Expect = 6.5 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 20/75 (26%) Query: 120 NLNFWILNDIVWRKSN-----PMPNFRGRRFQNAHET--------LIWASPSPKAKGYTF 166 L I N +V R + +PN+ F AH++ +I +PK G TF Sbjct: 264 GLEPLITNSLVNRSYDDKEGEAVPNYS---FVRAHDSEVQTVIADIIKKEINPKTDGLTF 320 Query: 167 NYDALKAA----NED 177 D LK A NED Sbjct: 321 TLDELKQAFKIYNED 335 >gnl|CDD|145316 pfam02086, MethyltransfD12, D12 class N6 adenine-specific DNA methyltransferase. Length = 254 Score = 27.3 bits (61), Expect = 6.9 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 5/51 (9%) Query: 4 KNSLAINENQNSIFEWK----DKIIKGNSISVLEKLPAKSVDLIFADPPYN 50 K + + K I G+ +VL D ++ DPPYN Sbjct: 138 KKPNFRALKELKLRALKLQNGATIECGDFDAVLLAANISD-DFVYLDPPYN 187 >gnl|CDD|144605 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 Score = 26.9 bits (60), Expect = 8.4 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%) Query: 137 MPNFRGRRFQNAHETL----IWASPSPKAK 162 PN G+ N ET P P++K Sbjct: 121 GPNSYGQPIVNGDETTPYESTHQDPYPESK 150 >gnl|CDD|147061 pfam04710, Pellino, Pellino. Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase. Length = 416 Score = 27.1 bits (60), Expect = 9.1 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP-EALLSRI 216 E ++ LI +C + R DG + PTQK EAL+ + Sbjct: 231 EETNVLQDGTLIDLCGATLLWRTADGLEHSPTQKHLEALIDEL 273 >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 Score = 26.9 bits (60), Expect = 9.3 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%) Query: 19 WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78 WKD II ++ L P V+ A LQ++ +R +++ + + Sbjct: 239 WKDLIIPSDANGRLGT-PTDLVEDAHA---AGLQVHPYTFRNENTFLPPDFFG----DPY 290 Query: 79 EAYDAFTRA 87 Y AF A Sbjct: 291 AEYRAFLDA 299 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.136 0.415 Gapped Lambda K H 0.267 0.0796 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,662,428 Number of extensions: 246791 Number of successful extensions: 533 Number of sequences better than 10.0: 1 Number of HSP's gapped: 522 Number of HSP's successfully gapped: 35 Length of query: 375 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 280 Effective length of database: 4,210,882 Effective search space: 1179046960 Effective search space used: 1179046960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.0 bits)