RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780466|ref|YP_003064879.1| putative modification
methylase [Candidatus Liberibacter asiaticus str. psy62]
         (375 letters)



>gnl|CDD|144957 pfam01555, N6_N4_Mtase, DNA methylase.  Members of this family are
           DNA methylases. The family contains both N-4
           cytosine-specific DNA methylases and N-6
           Adenine-specific DNA methylases.
          Length = 221

 Score =  234 bits (600), Expect = 2e-62
 Identities = 100/239 (41%), Positives = 132/239 (55%), Gaps = 33/239 (13%)

Query: 40  VDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPN 99
           VDLI  DPPYNL  +                 WD   S+E Y  +   WL   RRVLKP 
Sbjct: 1   VDLIVTDPPYNLGKDY--------------GQWDDKDSYEEYLEWLEEWLKEVRRVLKPG 46

Query: 100 GTLWVIGSYHNIF-RIGTMLQNLN-FWILNDIVWRKSNPMPNFRGRRFQNAHETLIWASP 157
           G++++      I       L+ L  F +LNDI+WRK N MPN  G RF  AHE ++W S 
Sbjct: 47  GSIFINIGDKYIKSLKALALEILGIFKLLNDIIWRKPNGMPNSNGERFTPAHEYILWFSK 106

Query: 158 SPKAKGYTFNYDALKAANEDVQMRSD-------------WLIPICSGSERLRNKDGEKLH 204
           + K   YTFNYDA+K   ++                   W  P    SE+     G   H
Sbjct: 107 TKKY--YTFNYDAIKVPYDEKDKLKKRGSEPNGKPIGDVWDFPRVQPSEK--ESGGNGAH 162

Query: 205 PTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATK 263
           PTQKPEALL R++++ST PGDI+LDPF GSGT+GA AK+L R+FIGIE++++Y++IA +
Sbjct: 163 PTQKPEALLERLILASTNPGDIVLDPFAGSGTTGAAAKELGRNFIGIEIEEEYVEIAKE 221


>gnl|CDD|31203 COG0863, COG0863, DNA modification methylase [DNA replication,
           recombination, and repair].
          Length = 302

 Score =  216 bits (550), Expect = 9e-57
 Identities = 101/287 (35%), Positives = 147/287 (51%), Gaps = 9/287 (3%)

Query: 18  EWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSS 77
           +   KI KG+ + +L+ LP  SVDLIF DPPYN    G+        +DA  D WD    
Sbjct: 14  DELSKIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAW-DGWDSRGI 72

Query: 78  FEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIVWRKSNPM 137
           +  +      WL   +RVLKP G+L+VI  + N+ RI  + + L F IL  I+W+K +P 
Sbjct: 73  YLKFILL--QWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEILGKIIWKKPSPR 130

Query: 138 PNFRGRRFQNAHETLIWAS-PSPKAKGYTFNYDALKAANEDVQMRSDWLI----PICSGS 192
            +   +     +E LIWA+  S K     F  D +    ED+++R  +      P   G+
Sbjct: 131 NSRIAKYLLFDYEPLIWANNKSDKLNVDKFKEDIVLDPFEDLRIREPYNKLIRLPDKKGN 190

Query: 193 ERLRNKD-GEKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGI 251
                   G+KLHP QKP AL+ R++   + PGDI+LDPF GSGT+G  AK L R FIGI
Sbjct: 191 WSNPIDSYGKKLHPAQKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGI 250

Query: 252 EMKQDYIDIATKRIASVQPLGNIELTVLTGKRTEPRVAFNLLVERGL 298
           E+  +Y+++A KR+        I +     +R    +    L E  +
Sbjct: 251 EINPEYVEVALKRLQEGLNRIPILIKNRVEERGSFVIESFYLEEGVI 297


>gnl|CDD|32372 COG2189, COG2189, Adenine specific DNA methylase Mod [DNA
           replication, recombination, and repair].
          Length = 590

 Score = 54.0 bits (129), Expect = 6e-08
 Identities = 30/63 (47%), Positives = 40/63 (63%)

Query: 206 TQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYIDIATKRI 265
             KPEALL RI+  +T   D++LD F GSGT+ AVA KL R +IGIE  +   +I  +R+
Sbjct: 436 RGKPEALLQRIIKITTNKNDLVLDFFAGSGTTTAVAHKLNRKYIGIEQMEYIENIILERL 495

Query: 266 ASV 268
             V
Sbjct: 496 KKV 498



 Score = 36.7 bits (84), Expect = 0.010
 Identities = 63/398 (15%), Positives = 114/398 (28%), Gaps = 74/398 (18%)

Query: 2   SQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIF---ADPPYNLQLNGQLY 58
           ++K  L          E K+ II  + +  L     + +D +     DPPY    N +  
Sbjct: 104 AEKAFLDAKRLTQEANENKNDIIYIDPLIALSSDYLRYLDKVKLIYIDPPYETGNNDRFL 163

Query: 59  RPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTML 118
             D         +W  F             L   +++LK +G +  +    N      +L
Sbjct: 164 YNDKFN----GSTWLSFMYNR---------LELAKKLLKDDGVI-FVSIDDNEQAYLKVL 209

Query: 119 QNLNF---WILNDIVWRKSNPMPNFRGRRFQNAHE-TLIWASPS---------------- 158
            +  F     + +I+W+K N   +   +     HE  L++A                   
Sbjct: 210 MDEIFGEENFITNIIWKKKNSSGSDSNKFVYIDHEYILVYAKNKYNRLELELEELDRQGN 269

Query: 159 -PKAKGYTFNYDALKAANEDVQ-----------------MRSDWLIPICSGSERLRNKDG 200
                    NY      NE  +                               +      
Sbjct: 270 IYVIYDENDNYLKKNKLNEIFRKINFKNKIIGKPFNGSGRIWANFKKYLIKGLKADQNYN 329

Query: 201 EKLHPTQKPEALLSRILVSSTKPGDIILDPFFGSGTSGAVAKKLRRSFIGIEMKQDYI-D 259
           +  +P   P  L  +      K  + ++DP  G+GT+     + +       + +     
Sbjct: 330 DNGYPRYYPFNLRYKKEKLDKKSKNRVIDPINGNGTTYGETARRKGYNDLKYIIKSIKEV 389

Query: 260 IATKRIASVQPLGNIELTVLTGKRTEPRV--------AFNLLVERGLIQPGQIL------ 305
              K   +V  L +  L    G  T              NL ++    +P  +L      
Sbjct: 390 KIEKNPKAVPYLNDRILDYFAGDFTTAHAVSYWNKEDKGNLGIDFKRGKPEALLQRIIKI 449

Query: 306 TNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSET 343
           T  + ++     A     SGT     H++  K  G E 
Sbjct: 450 TTNKNDLVLDFFAG----SGTTTAVAHKLNRKYIGIEQ 483


>gnl|CDD|32591 COG2521, COG2521, Predicted archaeal methyltransferase [General
           function prediction only].
          Length = 287

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 27/95 (28%)

Query: 8   AINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDA 67
            +N     +FE   KII G++  V++    +S D I  DPP    L G+LY         
Sbjct: 174 KLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPP-RFSLAGELY--------- 223

Query: 68  VTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTL 102
                    S E Y            R+LK  G L
Sbjct: 224 ---------SEEFYRELY--------RILKRGGRL 241


>gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function
           prediction only].
          Length = 248

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 18/123 (14%)

Query: 1   MSQKNSLAINENQNSIFEWKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRP 60
           M+Q+N +A+N  +  I     ++I+ +    L+ L   S DLI  +PPY  Q   +L   
Sbjct: 83  MAQRN-VALNPLEERI-----QVIEADIKEFLKALVFASFDLIICNPPYFKQ-GSRLNEN 135

Query: 61  DHSLVDAVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNIFRIGTMLQN 120
                          +  E         + A  ++LKP G L  +     +  I  +L++
Sbjct: 136 PLR----------AIARHEITLDL-EDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKS 184

Query: 121 LNF 123
            N 
Sbjct: 185 YNL 187


>gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
           recombination, and repair].
          Length = 187

 Score = 35.2 bits (81), Expect = 0.030
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 8   AINENQNSI-FEWKDKIIKGNSISVLEKLPAKSV-DLIFADPPYNLQL 53
            + EN  ++  E + ++++ +++  L++L  +   DL+F DPPY   L
Sbjct: 81  ILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGL 128


>gnl|CDD|31243 COG1041, COG1041, Predicted DNA modification methylase [DNA
           replication, recombination, and repair].
          Length = 347

 Score = 34.9 bits (80), Expect = 0.041
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 9/48 (18%)

Query: 198 KDGEKLHPTQKP-------EALLSRILV--SSTKPGDIILDPFFGSGT 236
           K  EK  P ++P       +  L+R +V  +  K G+++LDPF G+G 
Sbjct: 163 KAFEKRDPEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGG 210


>gnl|CDD|110191 pfam01170, UPF0020, Putative RNA methylase family UPF0020.  This
           domain is probably a methylase. It is associated with
           the THUMP domain that also occurs with RNA modification
           domains.
          Length = 171

 Score = 33.8 bits (78), Expect = 0.077
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 203 LHPTQKPEALLSRILVSST--KPGDIILDPFFGSGT 236
             P      L +R +V+    KPGD +LDPF GSGT
Sbjct: 7   NGPAPLKATL-ARAMVNLAGWKPGDPLLDPFCGSGT 41


>gnl|CDD|146308 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95. 
          Length = 181

 Score = 33.0 bits (76), Expect = 0.13
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 21  DKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQL 53
             +++ ++   L +L  K    DL+F DPPY   L
Sbjct: 93  GAVLRMDAARALLRLAGKGPPFDLVFLDPPYAKGL 127


>gnl|CDD|31289 COG1092, COG1092, Predicted SAM-dependent methyltransferases
           [General function prediction only].
          Length = 393

 Score = 32.2 bits (73), Expect = 0.26
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 25/105 (23%)

Query: 11  ENQ--NSIFEWKDKIIKGNSISVLEKLPAK--SVDLIFADPPYNLQLNGQLYRPDHSLVD 66
           EN   N +   + + I G+    L K   +    DLI  DPP                  
Sbjct: 258 ENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPP------------------ 299

Query: 67  AVTDSWDKFSSFEAYDAFTRAWLLACRRVLKPNGTLWVIGSYHNI 111
             + +  K   F A   +         R+L P GTL       + 
Sbjct: 300 --SFARSKKQEFSAQRDYKDL-NDLALRLLAPGGTLVTSSCSRHF 341


>gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain.  This domain is
           found in ribosomal RNA small subunit methyltransferase C
           as well as other methyltransferases .
          Length = 170

 Score = 31.4 bits (72), Expect = 0.42
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 25/79 (31%)

Query: 31  VLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLL 90
           +   +     DLI ++PP+            H+      D   +F             + 
Sbjct: 90  LYSAVEPGKFDLIISNPPF------------HAGKATDYDVAQRF-------------IA 124

Query: 91  ACRRVLKPNGTLWVIGSYH 109
              R LKP G LW++ + H
Sbjct: 125 GAARHLKPGGELWIVANRH 143


>gnl|CDD|37439 KOG2228, KOG2228, KOG2228, Origin recognition complex, subunit 4
           [Replication, recombination and repair].
          Length = 408

 Score = 31.1 bits (70), Expect = 0.57
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 15  SIFEWKDKIIKGNSISVLEK---LPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDS 71
             +    KI   + +SVLE    +  K   LI     +N  L    +R     +   ++ 
Sbjct: 281 RQYSVDPKIELLSGLSVLELYLIICMKRETLIAELNSFNFNLVYAEFRKFIKSIAHTSEL 340

Query: 72  WDKFSSFEAYDAFTRAWLL 90
           W K     A++      L+
Sbjct: 341 WAKTVVLNAFEHLRSLELI 359


>gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Translation, ribosomal
           structure and biogenesis].
          Length = 432

 Score = 30.7 bits (69), Expect = 0.67
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 223 PGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATKRIASVQPLGNIELTVLTG 281
            G+ +LD + G GT G  +AK++++   G+E+  + ++ A +  A+   + N+E      
Sbjct: 293 GGERVLDLYCGVGTFGLPLAKRVKKV-HGVEISPEAVEAA-QENAAANGIDNVEFIAGDA 350

Query: 282 KR 283
           + 
Sbjct: 351 EE 352


>gnl|CDD|35394 KOG0173, KOG0173, KOG0173, 20S proteasome, regulatory subunit beta
           type PSMB7/PSMB10/PUP1 [Posttranslational modification,
           protein turnover, chaperones].
          Length = 271

 Score = 30.3 bits (68), Expect = 0.84
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 272 GNIELTVLTGKRTEPRVAFNLLVERGLIQPGQILTNAQGNISATVCADGTLISGTELGSI 331
            N+EL  L   R +PRV   L + +      Q L   QG+I A +   G   +G  L SI
Sbjct: 98  SNLELHRLNTGR-KPRVVTALRMLK------QHLFRYQGHIGAALILGGVDPTGPHLYSI 150

Query: 332 HRVGA 336
           H  G+
Sbjct: 151 HPHGS 155


>gnl|CDD|32590 COG2520, COG2520, Predicted methyltransferase [General function
           prediction only].
          Length = 341

 Score = 29.9 bits (67), Expect = 1.1
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 215 RILVSSTKPGDIILDPFFGSGT-SGAVAKKLRRSFIGIE 252
             +    K G+ +LD F G G  S  +AKK R     I+
Sbjct: 180 ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAID 218


>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
           methyltransferases (SAM or AdoMet-MTase), class I;
           AdoMet-MTases are enzymes that use
           S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
           for methyltransfer, creating the product
           S-adenosyl-L-homocysteine (AdoHcy). There are at least
           five structurally distinct families of AdoMet-MTases,
           class I being the largest and most diverse. Within this
           class enzymes can be classified by different substrate
           specificities (small molecules, lipids, nucleic acids,
           etc.) and different target atoms for methylation
           (nitrogen, oxygen, carbon, sulfur, etc.)..
          Length = 107

 Score = 29.7 bits (67), Expect = 1.3
 Identities = 17/94 (18%), Positives = 23/94 (24%), Gaps = 14/94 (14%)

Query: 26  GNSISVLEKLPAKSVDLIFADPP-----YNLQLNGQLYRPDHSLVDAVTDSWDKFSSF-- 78
           G     L   P   V  +   P                  +    DA     +   SF  
Sbjct: 10  GALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDV 69

Query: 79  -------EAYDAFTRAWLLACRRVLKPNGTLWVI 105
                           +L   RR+LKP G L + 
Sbjct: 70  IISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103


>gnl|CDD|38115 KOG2904, KOG2904, KOG2904, Predicted methyltransferase [General
           function prediction only].
          Length = 328

 Score = 29.6 bits (66), Expect = 1.4
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 18/78 (23%)

Query: 33  EKLPAKSVDLIFADPPY-------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFT 85
             L    +DL+ ++PPY        L+   +LY P  +L              E YD   
Sbjct: 216 HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALD----------GGLEGYDNLV 265

Query: 86  RAWLLACRRVLKPNGTLW 103
             WLLA  R+L+P G   
Sbjct: 266 HYWLLAT-RMLQPGGFEQ 282


>gnl|CDD|111931 pfam03090, Replicase, Replicase family.  This is a family of
           bacterial plasmid DNA replication initiator proteins.
           Pfam: PF01051 is a similar family. These RepA proteins
           exist as monomers and dimers in equilibrium: monomers
           bind directly to repeated DNA sequences and thus
           activate replication; dimers repress repA transcription
           by binding an inversely repeated DNA operator. Dimer
           dissociation can occur spontaneously or be mediated by
           Hsp70 chaperones.
          Length = 137

 Score = 29.2 bits (66), Expect = 1.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 131 WRKSNPMPNFRGRRFQNAHETLIWASPSP 159
             +  P PN+  R   N H  LIW   +P
Sbjct: 44  EDEGLPAPNWIVRNPANGHAHLIWLLDAP 72


>gnl|CDD|37882 KOG2671, KOG2671, KOG2671, Putative RNA methylase [Replication,
           recombination and repair].
          Length = 421

 Score = 29.1 bits (65), Expect = 2.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 222 KPGDIILDPFFGSGT 236
           KPGDI+ DPF G+G+
Sbjct: 207 KPGDIVYDPFVGTGS 221


>gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors
           [Translation, ribosomal structure and biogenesis].
          Length = 280

 Score = 28.4 bits (63), Expect = 3.0
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 17/99 (17%)

Query: 38  KSVDLIFADPPY------NLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAYDAFTRAWLLA 91
              DLI ++PPY       L      Y P  +LV                    R  L  
Sbjct: 175 GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALV-----------GGGDGLEVYRRILGE 223

Query: 92  CRRVLKPNGTLWVIGSYHNIFRIGTMLQNLNFWILNDIV 130
              +LKP G L +         +  + ++  F+ + + +
Sbjct: 224 APDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETL 262


>gnl|CDD|30835 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell
           division and chromosome partitioning].
          Length = 265

 Score = 28.1 bits (62), Expect = 4.0
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 185 LIPICSGSERLRNKDGEKLHPTQKPEALLSRILVSSTKPGD 225
           L+P  + SE LR             + + + I V+S K G 
Sbjct: 29  LLPKSTASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGV 69


>gnl|CDD|37398 KOG2187, KOG2187, KOG2187, tRNA uracil-5-methyltransferase and
           related tRNA-modifying enzymes [Translation, ribosomal
           structure and biogenesis].
          Length = 534

 Score = 28.0 bits (62), Expect = 4.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 222 KPGDIILDPFFGSGTSG-AVAKKLRRSFIGIEMKQDYIDIATK 263
                +LD   G+GT G A+A+ ++R  IG+E+  D ++ A K
Sbjct: 382 PADKTLLDVCCGTGTIGLALARGVKRV-IGVEISPDAVEDAEK 423


>gnl|CDD|30465 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA
           replication, recombination, and repair].
          Length = 381

 Score = 28.0 bits (62), Expect = 5.0
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 216 ILVSSTKPGDIILDPFFGSGT--------SGAVAKKLRRSFIGIEMKQDYIDIATKRIAS 267
           +L++  KP + +LDP  GSGT        +  +A  L R F          D+  K    
Sbjct: 184 LLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREE 243

Query: 268 VQPLGNI--ELTVLTGKRTEPRV 288
            +       EL ++ G   +PR 
Sbjct: 244 AEERARRGKELPIIYGSDIDPRH 266


>gnl|CDD|145489 pfam02369, Big_1, Bacterial Ig-like domain (group 1).  This family
           consists of bacterial domains with an Ig-like fold.
           Members of this family are found in bacterial surface
           proteins such as intimins and invasins involved in
           pathogenicity.
          Length = 93

 Score = 27.4 bits (61), Expect = 5.9
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 297 GLIQPGQILTNAQGNISATVCADGTLISGTELGSIHRVGAKVSGSET 343
            L    +  T+A G  + T+       + T+ G+ + V A ++   T
Sbjct: 48  TLSNGNKATTDANGVATVTL-------TSTKAGT-YTVTASLANGAT 86


>gnl|CDD|111238 pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70.  Members
           of this family belong to glycosyl hydrolase family 70
           Glucosyltransferases or sucrose 6-glycosyl transferases
           (GTF-S) catalyse the transfer of D-glucopyramnosyl units
           from sucrose onto acceptor molecules, EC:2.4.1.5. This
           family roughly corresponds to the N-terminal catalytic
           domain of the enzyme. Members of this family also
           contain the Putative cell wall binding domain pfam01473,
           which corresponds with the C-terminal glucan-binding
           domain.
          Length = 808

 Score = 27.4 bits (61), Expect = 6.5
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 20/75 (26%)

Query: 120 NLNFWILNDIVWRKSN-----PMPNFRGRRFQNAHET--------LIWASPSPKAKGYTF 166
            L   I N +V R  +      +PN+    F  AH++        +I    +PK  G TF
Sbjct: 264 GLEPLITNSLVNRSYDDKEGEAVPNYS---FVRAHDSEVQTVIADIIKKEINPKTDGLTF 320

Query: 167 NYDALKAA----NED 177
             D LK A    NED
Sbjct: 321 TLDELKQAFKIYNED 335


>gnl|CDD|145316 pfam02086, MethyltransfD12, D12 class N6 adenine-specific DNA
           methyltransferase. 
          Length = 254

 Score = 27.3 bits (61), Expect = 6.9
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 4   KNSLAINENQNSIFEWK----DKIIKGNSISVLEKLPAKSVDLIFADPPYN 50
           K        +  +   K      I  G+  +VL        D ++ DPPYN
Sbjct: 138 KKPNFRALKELKLRALKLQNGATIECGDFDAVLLAANISD-DFVYLDPPYN 187


>gnl|CDD|144605 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase
           family.  The enzyme 3 beta-hydroxysteroid
           dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD)
           catalyses the oxidation and isomerisation of 5-ene-3
           beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid
           precursors into the corresponding 4-ene-ketosteroids
           necessary for the formation of all classes of steroid
           hormones.
          Length = 280

 Score = 26.9 bits (60), Expect = 8.4
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)

Query: 137 MPNFRGRRFQNAHETL----IWASPSPKAK 162
            PN  G+   N  ET         P P++K
Sbjct: 121 GPNSYGQPIVNGDETTPYESTHQDPYPESK 150


>gnl|CDD|147061 pfam04710, Pellino, Pellino.  Pellino is involved in Toll-like
           signalling pathways, and associates with the kinase
           domain of the Pelle Ser/Thr kinase.
          Length = 416

 Score = 27.1 bits (60), Expect = 9.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 175 NEDVQMRSDWLIPICSGSERLRNKDGEKLHPTQKP-EALLSRI 216
            E   ++   LI +C  +   R  DG +  PTQK  EAL+  +
Sbjct: 231 EETNVLQDGTLIDLCGATLLWRTADGLEHSPTQKHLEALIDEL 273


>gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase
           domain of Streptomycin coelicolor (GlpQ1) and similar
           proteins.  This subfamily corresponds to the
           glycerophosphodiester phosphodiesterase domain (GDPD)
           present  in a group of putative bacterial and eukaryotic
           glycerophosphodiester phosphodiesterases (GP-GDE, EC
           3.1.4.46) similar to Escherichia coli periplasmic
           phosphodiesterase GlpQ, as well as plant
           glycerophosphodiester phosphodiesterases (GP-PDEs), all
           of which catalyzes the Ca2+-dependent degradation of
           periplasmic glycerophosphodiesters to produce
           sn-glycerol-3-phosphate (G3P) and the corresponding
           alcohols. The prototypes of this family include putative
           secreted phosphodiesterase encoded by gene glpQ1
           (SCO1565) from the pho regulon in Streptomyces
           coelicolor genome, and in plants, two distinct
           Arabidopsis thaliana genes, AT5G08030 and AT1G74210,
           coding putative GP-PDEs from the cell walls and
           vacuoles, respectively.
          Length = 309

 Score = 26.9 bits (60), Expect = 9.3
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 19  WKDKIIKGNSISVLEKLPAKSVDLIFADPPYNLQLNGQLYRPDHSLVDAVTDSWDKFSSF 78
           WKD II  ++   L   P   V+   A     LQ++   +R +++ +            +
Sbjct: 239 WKDLIIPSDANGRLGT-PTDLVEDAHA---AGLQVHPYTFRNENTFLPPDFFG----DPY 290

Query: 79  EAYDAFTRA 87
             Y AF  A
Sbjct: 291 AEYRAFLDA 299


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0796    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,662,428
Number of extensions: 246791
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 35
Length of query: 375
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 280
Effective length of database: 4,210,882
Effective search space: 1179046960
Effective search space used: 1179046960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)