RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small
subunit [Candidatus Liberibacter asiaticus str. psy62]
(86 letters)
>gnl|CDD|179195 PRK00977, PRK00977, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 80
Score = 72.2 bits (178), Expect = 3e-14
Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRD 73
L FEEA++ELE I+ +LE GD+ L+ES++ +ERG AL C+ L AE+R+E++ L+ D
Sbjct: 10 LSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKL-LDED 68
Query: 74 NKIQSVKPFDE 84
K S++PFD
Sbjct: 69 GKEASLEPFDP 79
>gnl|CDD|162283 TIGR01280, xseB, exodeoxyribonuclease VII, small subunit. This
protein is the small subunit for exodeoxyribonuclease
VII. Exodeoxyribonuclease VII is made of a complex of
four small subunits to one large subunit. The complex
degrades single-stranded DNA into large acid-insoluble
oligonucleotides. These nucleotides are then degraded
further into acid-soluble oligonucleotides.
Length = 67
Score = 58.9 bits (143), Expect = 3e-10
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRD 73
L FEEA+SELE I+ KLE GD+ L+E+++++ERG AL CE L AE+R+ ++ D
Sbjct: 1 LSFEEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVRKLLKEDD 60
>gnl|CDD|172559 PRK14069, PRK14069, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 95
Score = 50.8 bits (121), Expect = 8e-08
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 9 DDLSHLPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIE 66
+ S + FE+A+ ELE I KLER D +L+ES+ YERG LK C +L AE +IE
Sbjct: 3 EKKSKISFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIE 60
>gnl|CDD|184483 PRK14063, PRK14063, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 76
Score = 43.7 bits (103), Expect = 1e-05
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQI 68
L FEEA+S+LE++++KLE+GDV L+E+IS ++ G L C+ L + ++++ I
Sbjct: 5 LSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVI 59
>gnl|CDD|184485 PRK14068, PRK14068, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 76
Score = 42.2 bits (99), Expect = 3e-05
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 16 FEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRDNK 75
FEE + ELE I+ KL+ V+L+ES+ +Y+RG L + C+ L +AEK++ +
Sbjct: 8 FEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKEEAED 67
Query: 76 IQSVKPFDE 84
+++ + DE
Sbjct: 68 VKNDESTDE 76
>gnl|CDD|172554 PRK14064, PRK14064, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 75
Score = 41.7 bits (97), Expect = 4e-05
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 16 FEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQI 68
FEEA++ELE I+ LE G +L++S+ +Y++G L C+ L SAEKR+ ++
Sbjct: 8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKV 60
>gnl|CDD|172556 PRK14066, PRK14066, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 75
Score = 41.4 bits (97), Expect = 5e-05
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 16 FEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRDNK 75
FE A+ +LE ++ KLE G+++LD+S+ +E G + C L AE+R+E + +D
Sbjct: 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVLLKQKDGS 65
Query: 76 IQSVKPFDEKN 86
+PF +
Sbjct: 66 F-VREPFRLDD 75
>gnl|CDD|172557 PRK14067, PRK14067, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 80
Score = 36.3 bits (84), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 16 FEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRI 65
FE+ ++ L+ I+ LE GD+ L+ES+++Y+ G L C L A I
Sbjct: 9 FEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEI 58
>gnl|CDD|184334 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 29.4 bits (66), Expect = 0.19
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 11 LSHLPFEEAVSELENIIAKLER 32
+SHLP EE +S LE+I+ ER
Sbjct: 307 VSHLP-EETLSALESILHTTER 327
>gnl|CDD|184486 PRK14070, PRK14070, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 69
Score = 28.8 bits (64), Expect = 0.29
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 20 VSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRI 65
+ ELE I+ +LE D+ L+ESI ++ERG L C+ +L +I
Sbjct: 1 MKELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQQNRLKI 46
>gnl|CDD|178411 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 28.5 bits (64), Expect = 0.41
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 10 DLSHLPFEEAVSELENIIAK-LERG-DVTLD 38
D+SH P EE +S NI A+ L+RG D+T
Sbjct: 335 DISHKPREEILSHFPNIAAECLKRGLDITKQ 365
>gnl|CDD|181474 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 27.5 bits (62), Expect = 0.70
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 5 SINLDDLSHLPFEEAVSELENIIAKLERGDVTLDESISIYERGE 48
+ +DD +P EEA E++ II + E+ V +E I YE GE
Sbjct: 646 TTGIDDED-IP-EEAKEEIDEIIEEAEK-RV--EELIEAYENGE 684
>gnl|CDD|184617 PRK14317, glmM, phosphoglucosamine mutase; Provisional.
Length = 465
Score = 27.3 bits (61), Expect = 1.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 21 SELENIIAKLERGDVTLDESIS----IYERGEALKSHCEFLLCSAEKRI 65
EL+ I RG+++ ++ S Y R E L + + LL S R+
Sbjct: 136 PELQAQIEAGLRGELSSSDNASNWGRHYHRPELLDDYRDALLESLPDRV 184
>gnl|CDD|180223 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase
subunit alpha; Validated.
Length = 319
Score = 27.0 bits (61), Expect = 1.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 11 LSHLPFEEAVSELENIIAKL----ERGDVTLDESISIYER 46
L++L FE+ ++ELE I +L E DV L E I E+
Sbjct: 3 LNYLDFEKPIAELEAKIEELRAVAEDSDVDLSEEIERLEK 42
>gnl|CDD|185092 PRK15138, PRK15138, aldehyde reductase; Provisional.
Length = 387
Score = 25.9 bits (57), Expect = 2.1
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 21 SELENIIAKL---------ERGDVTLDESISIYE 45
S + ++ KL E D+TLD S IYE
Sbjct: 351 SSIPALLKKLEEHGMTQLGEHHDITLDVSRRIYE 384
>gnl|CDD|181690 PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 26.2 bits (58), Expect = 2.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 10 DLSHLPFEEAVSELENIIAKLERGDVTLD 38
D SHLPF + +S ++ ++ R DV+++
Sbjct: 104 DGSHLPFAQNISLVKEVVDFCHRFDVSVE 132
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. This model
is specific for the bacterial members of this family.
Length = 525
Score = 26.0 bits (57), Expect = 2.4
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 17 EEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRDNKI 76
E + ELE IIA+ + E+ ++ LL + RIE+++ + + KI
Sbjct: 411 EHSERELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADGEEKI 470
Query: 77 QS 78
+S
Sbjct: 471 RS 472
>gnl|CDD|130917 TIGR01858, tag_bisphos_ald, class II aldolase, tagatose
bisphosphate family. This model describes
tagatose-1,6-bisphosphate aldolases, and perhaps other
closely related class II aldolases. This tetrameric,
Zn2+-dependent enzyme is related to the class II
fructose bisphosphate aldolase; fructose
1,6-bisphosphate and tagatose 1,6 bisphosphate differ
only in chirality at C4.
Length = 282
Score = 26.0 bits (57), Expect = 2.5
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 10 DLSHLPFEEAVSELENIIAKLERGDVTLD 38
D SH PF + V ++ ++ R D +++
Sbjct: 102 DGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130
>gnl|CDD|179241 PRK01185, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 271
Score = 25.2 bits (55), Expect = 3.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 6 INLDDLSHLPFEEAVSELENIIAKLERGDVTLDESISI 43
IN+ L L E + E+ + I KL RG+ +DE + +
Sbjct: 79 INMGGLGFLT-EIEIDEVGSAIKKLIRGEYFIDERMKL 115
>gnl|CDD|185327 PRK15429, PRK15429, formate hydrogenlyase transcriptional activator
FhlA; Provisional.
Length = 686
Score = 25.2 bits (55), Expect = 3.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 2 NDDSI---NLDDLSHLPFEEAVSELENIIAK---LERGDV 35
N DSI L LS++ + V ELEN+I + L RG+V
Sbjct: 574 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 613
>gnl|CDD|181725 PRK09247, PRK09247, ATP-dependent DNA ligase; Validated.
Length = 539
Score = 25.2 bits (56), Expect = 4.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 9 DDLSHLPFEEAVSELENIIAKLERGDVTLDESISI 43
+DL LP E + LE +IA+L + L +
Sbjct: 329 EDLRALPLAERRARLEALIARLPDPRLDLSPLVPF 363
>gnl|CDD|180926 PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional.
Length = 293
Score = 24.5 bits (53), Expect = 6.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 10 DLSHLPFEEAVSELENIIAK 29
D SHLP EE + + ++ K
Sbjct: 106 DGSHLPVEENLKLAKEVVEK 125
>gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 24.4 bits (54), Expect = 6.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 17 EEAVSELENIIAKLERGDVTLDESISIYERGE 48
EEA E N KLE D +E I+IY+ G+
Sbjct: 80 EEAREEFANEPYKLELIDDIPEEGITIYDNGD 111
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model
represents a family of bacterial oxidoreductases with
covalently linked FAD, closely related to two different
eukaryotic oxidases, L-gulonolactone oxidase (EC
1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase
(EC 1.1.3.37) from Saccharomyces cerevisiae.
Length = 419
Score = 24.5 bits (53), Expect = 6.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 13 HLPFEEAVSELENIIAKLER 32
HLP E L+ +I +ER
Sbjct: 294 HLPRENGRKALQEVIDLVER 313
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Reviewed.
Length = 417
Score = 24.4 bits (54), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 23 LENIIAKLERGDVTL---DESISIYERGEALKS 52
LE+ IAKLE V + ++SI + E+ LK+
Sbjct: 259 LESFIAKLEEMGVRVEVNEDSIFV-EKQGNLKA 290
>gnl|CDD|166036 PLN02395, PLN02395, glutathione S-transferase.
Length = 215
Score = 24.1 bits (52), Expect = 7.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 4 DSINLDDLSHLPFEE 18
D ++L DL+HLPF E
Sbjct: 159 DFVSLADLAHLPFTE 173
>gnl|CDD|150713 pfam10070, DUF2309, Uncharacterized protein conserved in bacteria
(DUF2309). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 783
Score = 24.1 bits (53), Expect = 8.8
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 11 LSHLPFEEAVSELENIIAKLERGDVTLDESI--SIYERGE 48
PFEEA + L A+L + + S G
Sbjct: 27 FEDQPFEEAAARL----ARLFGARLYMPRSDYREALAEGR 62
>gnl|CDD|161739 TIGR00167, cbbA, ketose-bisphosphate aldolases.
fructose-bisphosphate and tagatose-bisphosphate
aldolase.
Length = 288
Score = 24.2 bits (53), Expect = 8.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 10 DLSHLPFEEAVS 21
D SH PFEE +
Sbjct: 107 DGSHEPFEENIE 118
>gnl|CDD|148076 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 571
Score = 23.9 bits (52), Expect = 8.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 19 AVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFL----LCSAEKRIEQIKL 70
AV EL + +LE + LD + + EAL+ E L A +E++K
Sbjct: 81 AVEELAELKRQLEEKILGLDLLKKLLKIHEALEEVNEALKGKDYLKAADLLEKLKS 136
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 23.9 bits (52), Expect = 8.9
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 10 DLSHLPFEEAVSELENIIAKLER 32
L HL EE + +E I+ ER
Sbjct: 301 KLDHLA-EETIQTIETILHTNER 322
>gnl|CDD|161909 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta.
Length = 316
Score = 24.0 bits (52), Expect = 9.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 14 LPFEEAVSELENIIAKLERG----DVTLDESISIYER 46
L FE+ ++ELE I L DV L E I E+
Sbjct: 6 LDFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEK 42
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.313 0.133 0.360
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,335,055
Number of extensions: 70391
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 60
Length of query: 86
Length of database: 5,994,473
Length adjustment: 55
Effective length of query: 31
Effective length of database: 4,806,033
Effective search space: 148987023
Effective search space used: 148987023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.0 bits)