RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter asiaticus str. psy62] (86 letters) >1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, structural genomics, joint center for structural genomics, JCSG, PSI; 2.40A {Bordetella pertussis tohama I} (A:) Length = 100 Score = 64.0 bits (156), Expect = 7e-12 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRD 73 FE A++ELE++++ E G + L++S+S Y RG L C+ L AE++++ + Sbjct: 30 QDFETALAELESLVSAXENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL-EGDL 88 Query: 74 NKIQSVKPFDE 84 + D+ Sbjct: 89 LRPLDPAALDD 99 >1cbg_A Cyanogenic beta-glucosidase; 2.15A {Trifolium repens} (A:1-32,A:87-463) Length = 409 Score = 27.4 bits (59), Expect = 0.76 Identities = 8/43 (18%), Positives = 17/43 (39%) Query: 24 ENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIE 66 EN + ++L ES+ R + H ++L + + Sbjct: 343 ENGRNEFNDPTLSLQESLLDTPRIDYYYRHLYYVLTAIGDGVN 385 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 27.2 bits (60), Expect = 0.93 Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 62 EKRIEQIKLNRDNKIQSVKP 81 R QIK +N+++++K Sbjct: 34 VTREAQIKDWVENELEALKL 53 >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:) Length = 323 Score = 25.3 bits (55), Expect = 3.3 Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 10 DLSHLPFEEAVSELENIIAKLERGDVTLDESISIYERGE 48 D SH PF+E V + ++A V+++ + E Sbjct: 105 DASHHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIE 143 >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} (A:) Length = 286 Score = 24.5 bits (53), Expect = 4.9 Identities = 8/28 (28%), Positives = 15/28 (53%) Query: 10 DLSHLPFEEAVSELENIIAKLERGDVTL 37 D SH PF E V +++++ D ++ Sbjct: 104 DGSHFPFAENVKLVKSVVDFCHSQDCSV 131 >1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} (A:1-104,A:326-348) Length = 127 Score = 24.4 bits (53), Expect = 6.1 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 17 EEAVSELENIIAKLERGDVTLD 38 +E EL + A+L + VT+ Sbjct: 59 KETEEELHVLAAELTKLGVTVR 80 >3c4u_A Fructose-bisphosphate aldolase; FBP aldolase, class II, zinc, glycolysis, lyase, metal- binding; 1.83A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* (A:) Length = 307 Score = 23.8 bits (51), Expect = 8.9 Identities = 7/28 (25%), Positives = 12/28 (42%) Query: 10 DLSHLPFEEAVSELENIIAKLERGDVTL 37 D SH FEE + ++ V++ Sbjct: 104 DASHHAFEENLELTSKVVKMAHNAGVSV 131 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.313 0.133 0.360 Gapped Lambda K H 0.267 0.0679 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 603,147 Number of extensions: 22496 Number of successful extensions: 100 Number of sequences better than 10.0: 1 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 16 Length of query: 86 Length of database: 4,956,049 Length adjustment: 49 Effective length of query: 37 Effective length of database: 3,299,604 Effective search space: 122085348 Effective search space used: 122085348 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.1 bits)