RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small
subunit [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)



>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1,
          structural genomics, joint center for structural
          genomics, JCSG, PSI; 2.40A {Bordetella pertussis tohama
          I} (A:)
          Length = 100

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 14 LPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIEQIKLNRD 73
            FE A++ELE++++  E G + L++S+S Y RG  L   C+  L  AE++++ +     
Sbjct: 30 QDFETALAELESLVSAXENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL-EGDL 88

Query: 74 NKIQSVKPFDE 84
           +       D+
Sbjct: 89 LRPLDPAALDD 99


>1cbg_A Cyanogenic beta-glucosidase; 2.15A {Trifolium repens}
           (A:1-32,A:87-463)
          Length = 409

 Score = 27.4 bits (59), Expect = 0.76
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 24  ENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCSAEKRIE 66
           EN   +     ++L ES+    R +    H  ++L +    + 
Sbjct: 343 ENGRNEFNDPTLSLQESLLDTPRIDYYYRHLYYVLTAIGDGVN 385


>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 27.2 bits (60), Expect = 0.93
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 62 EKRIEQIKLNRDNKIQSVKP 81
            R  QIK   +N+++++K 
Sbjct: 34 VTREAQIKDWVENELEALKL 53


>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II
           fructose-1,6-bisphosphate aldolase, glycolytic pathway,
           giardia lamblia, drug target; HET: PGH; 1.75A {Giardia
           intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:)
          Length = 323

 Score = 25.3 bits (55), Expect = 3.3
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 10  DLSHLPFEEAVSELENIIAKLERGDVTLDESISIYERGE 48
           D SH PF+E V   + ++A      V+++  +      E
Sbjct: 105 DASHHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIE 143


>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH;
           1.45A {Escherichia coli} (A:)
          Length = 286

 Score = 24.5 bits (53), Expect = 4.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 10  DLSHLPFEEAVSELENIIAKLERGDVTL 37
           D SH PF E V  +++++      D ++
Sbjct: 104 DGSHFPFAENVKLVKSVVDFCHSQDCSV 131


>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase);
          streptomycin; 3.10A {Streptomyces griseus}
          (A:1-104,A:326-348)
          Length = 127

 Score = 24.4 bits (53), Expect = 6.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 17 EEAVSELENIIAKLERGDVTLD 38
          +E   EL  + A+L +  VT+ 
Sbjct: 59 KETEEELHVLAAELTKLGVTVR 80


>3c4u_A Fructose-bisphosphate aldolase; FBP aldolase, class II,
           zinc, glycolysis, lyase, metal- binding; 1.83A
           {Helicobacter pylori} PDB: 3c52_A* 3c56_A* (A:)
          Length = 307

 Score = 23.8 bits (51), Expect = 8.9
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 10  DLSHLPFEEAVSELENIIAKLERGDVTL 37
           D SH  FEE +     ++       V++
Sbjct: 104 DASHHAFEENLELTSKVVKMAHNAGVSV 131


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.313    0.133    0.360 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 603,147
Number of extensions: 22496
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 16
Length of query: 86
Length of database: 4,956,049
Length adjustment: 49
Effective length of query: 37
Effective length of database: 3,299,604
Effective search space: 122085348
Effective search space used: 122085348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)