BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small
subunit [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 86

 Score =  172 bits (437), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MNDDSINLDDLSHLPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCS 60
          MNDDSINLDDLSHLPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCS
Sbjct: 1  MNDDSINLDDLSHLPFEEAVSELENIIAKLERGDVTLDESISIYERGEALKSHCEFLLCS 60

Query: 61 AEKRIEQIKLNRDNKIQSVKPFDEKN 86
          AEKRIEQIKLNRDNKIQSVKPFDEKN
Sbjct: 61 AEKRIEQIKLNRDNKIQSVKPFDEKN 86


>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 500

 Score = 23.9 bits (50), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 28  AKLERGDVTLDESISIYERGEALKSHCE 55
             +E G +  D ++S+   GEA  + CE
Sbjct: 209 GNMEEGSMRADVNVSVCRPGEAWGTRCE 236


>gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 400

 Score = 20.0 bits (40), Expect = 8.0,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 15  PFEEAVSELENIIAKLER 32
           PF+ A  E+ + +AKL +
Sbjct: 328 PFDRATVEVAHYVAKLTK 345


>gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 317

 Score = 19.6 bits (39), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 13 HLPFEEAVSELENII---AKLERGDVTLDES 40
          +L FEE +S+LE  I    KL R D+  D S
Sbjct: 4  YLDFEEPISDLEAKIHELKKLSREDINEDFS 34


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.133    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,972
Number of Sequences: 1233
Number of extensions: 1728
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 86
length of database: 328,796
effective HSP length: 55
effective length of query: 31
effective length of database: 260,981
effective search space:  8090411
effective search space used:  8090411
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.5 bits)
S2: 31 (16.5 bits)