HHsearch alignment for GI: 254780468 and conserved domain: COG3290
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=97.84 E-value=0.0013 Score=46.45 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99748889999983259389999879978999888997628997783389789886269768999999999996078973
Q gi|254780468|r 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 (963)
Q Consensus 399 ~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~ 478 (963)
T Consensus 209 EIa~l~~er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~------~~l~~vl~~~~~~ 282 (537)
T COG3290 209 EIATLLEERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPD------SDLPEVLETGKPQ 282 (537)
T ss_pred HHHHHHHHHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEEECCC------CCCHHHHHCCCCC
T ss_conf 9999999999999876362899878985761128899984656767564466103761563------6757787507763
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899999986999689998722676879998899999998530577312321663-0677532406699999999999987
Q gi|254780468|r 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNLTGIPNRQSFLDRLTTILDL 557 (963)
Q Consensus 479 ~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~-a~~D~lTGL~NR~~f~~~l~~~l~~ 557 (963)
T Consensus 283 ~~~e~~~n---g--~~~i~nr~pI~-~~~~~~GaI~tFRdktei~~L~eqLt~vr~ya~aLR--aq~HEfmNkLhtI~-- 352 (537)
T COG3290 283 HDEEIRIN---G--RLLVANRVPIR-SGGQIVGAIITFRDKTEIKKLTEQLTGVRQYAEALR--AQSHEFMNKLHTIL-- 352 (537)
T ss_pred CCHHHHCC---C--EEEEEEECCEE-ECCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--
T ss_conf 11344147---7--59999852378-889776899987637789999999998999999998--85288888899998--
Q ss_pred HHHCCCCCEEEEEEECCCHHHHHHHCC
Q ss_conf 553389848999997678579888427
Q gi|254780468|r 558 SATDDNLRPTVMVIDIDKYKKINDVLG 584 (963)
Q Consensus 558 ~~~~~~~~~~l~~idid~fk~iN~~~G 584 (963)
T Consensus 353 -----------GLlql~~yd~a~~~I~ 368 (537)
T COG3290 353 -----------GLLQLGEYDDALDYIQ 368 (537)
T ss_pred -----------HHHHHCCHHHHHHHHH
T ss_conf -----------7885053789999999