HHsearch alignment for GI: 254780468 and conserved domain: COG3706

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.96  E-value=9.4e-29  Score=248.99  Aligned_cols=173  Identities=31%  Similarity=0.453  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             77312321663067753240669999999999998755338984899999767857988842778899999999999998
Q gi|254780468|r  522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE  601 (963)
Q Consensus       522 ~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~  601 (963)
T Consensus       259 L~~~~~~~~~l~~~D~LTGL~NRR~~~~~L~~~~~ra~~~-~~pls~~m~DID~FK~iNDt~GH~~GDevLr~vA~~L~~  337 (435)
T COG3706         259 LRESLERLQELALVDGLTGLFNRRYFDEHLADLWKRALRE-GRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLRQ  337 (435)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999999987532443347665899999999999999854-797169997130124132101884188999999999986


Q ss_pred             HCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHH-HHCEEEECCEE--EEEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             348997699980641020255669989999987655543-10115525467--999999877645898899899999999
Q gi|254780468|r  602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS-IAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAE  678 (963)
Q Consensus       602 ~~~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--i~~t~siGi~~~~~~~~~~~~ll~~Ad  678 (963)
T Consensus       338 ~vr~~Dl~aRyGGEEF~vvlp~t~~-~~Ai~iaerIr~~i~~~~~~~~~~~~~~~~TiSiGVa~~~p~~~~~~~li~~AD  416 (435)
T COG3706         338 TVRGLDLVARYGGEEFAVVLPDTDL-EAAIAIAERIRQKINELPFVHELSREPLEVTISIGVAEGKPGEDSIEELLKRAD  416 (435)
T ss_pred             HCCCCCCCEECCCEEEEEEECCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             4323330001277269999448887-899999999999974178301466543279999988745778876999999999


Q ss_pred             HHHHHHHHHCCCCEEECC
Q ss_conf             999999870897405201
Q gi|254780468|r  679 LAMYHAKHRGGNHVESFR  696 (963)
Q Consensus       679 ~Al~~Ak~~g~~~~~~~~  696 (963)
T Consensus       417 ~aLy~AK~sGRnrv~~~~  434 (435)
T COG3706         417 KALYKAKASGRNRVVVKR  434 (435)
T ss_pred             HHHHHHHHCCCCEEEECC
T ss_conf             998677754964289616