HHsearch alignment for GI: 254780468 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.96 E-value=9.4e-29 Score=248.99 Aligned_cols=173 Identities=31% Similarity=0.453 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 77312321663067753240669999999999998755338984899999767857988842778899999999999998
Q gi|254780468|r 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 (963)
Q Consensus 522 ~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~ 601 (963)
T Consensus 259 L~~~~~~~~~l~~~D~LTGL~NRR~~~~~L~~~~~ra~~~-~~pls~~m~DID~FK~iNDt~GH~~GDevLr~vA~~L~~ 337 (435)
T COG3706 259 LRESLERLQELALVDGLTGLFNRRYFDEHLADLWKRALRE-GRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLRQ 337 (435)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999987532443347665899999999999999854-797169997130124132101884188999999999986
Q ss_pred HCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHH-HHCEEEECCEE--EEEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 348997699980641020255669989999987655543-10115525467--999999877645898899899999999
Q gi|254780468|r 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS-IAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAE 678 (963)
Q Consensus 602 ~~~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--i~~t~siGi~~~~~~~~~~~~ll~~Ad 678 (963)
T Consensus 338 ~vr~~Dl~aRyGGEEF~vvlp~t~~-~~Ai~iaerIr~~i~~~~~~~~~~~~~~~~TiSiGVa~~~p~~~~~~~li~~AD 416 (435)
T COG3706 338 TVRGLDLVARYGGEEFAVVLPDTDL-EAAIAIAERIRQKINELPFVHELSREPLEVTISIGVAEGKPGEDSIEELLKRAD 416 (435)
T ss_pred HCCCCCCCEECCCEEEEEEECCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 4323330001277269999448887-899999999999974178301466543279999988745778876999999999
Q ss_pred HHHHHHHHHCCCCEEECC
Q ss_conf 999999870897405201
Q gi|254780468|r 679 LAMYHAKHRGGNHVESFR 696 (963)
Q Consensus 679 ~Al~~Ak~~g~~~~~~~~ 696 (963)
T Consensus 417 ~aLy~AK~sGRnrv~~~~ 434 (435)
T COG3706 417 KALYKAKASGRNRVVVKR 434 (435)
T ss_pred HHHHHHHHCCCCEEEECC
T ss_conf 998677754964289616