HHsearch alignment for GI: 254780468 and conserved domain: COG3852

>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=94.55  E-value=0.36  Score=26.72  Aligned_cols=125  Identities=15%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             HHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHH-HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf             998325938999987997899988899762899778338978-9886269768999999999996078973899999986
Q gi|254780468|r  409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA  487 (963)
Q Consensus       409 ~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~-~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~  487 (963)
T Consensus        11 ~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~g-----s~ll~ll~q~~~~~~~~~~~~v~l~-   84 (363)
T COG3852          11 AILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPFG-----SLLLSLLDQVLERGQPVTEYEVTLV-   84 (363)
T ss_pred             HHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCCC-----CHHHHHHHHHHHHCCCCCCCEEEEE-
T ss_conf             6874557856998277828960888999999778888248778871777-----2889999899983588510102442-


Q ss_pred             CCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             9996899987226768799988999999985305773123216630677532406
Q gi|254780468|r  488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP  542 (963)
Q Consensus       488 ~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~  542 (963)
T Consensus        85 ~~g~~~~v~~~v~~v~~~~G~vl---le~~~~~~~~ridre~~q~a~~~a~~~L~  136 (363)
T COG3852          85 ILGRSHIVDLTVAPVPEEPGSVL---LEFHPRDMQRRLDREQTQHAQQRAVKGLV  136 (363)
T ss_pred             ECCCCCEEEEEEEECCCCCCEEE---EEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             07865237899862268997489---99532577767669999888888999999