HHsearch alignment for GI: 254780468 and conserved domain: COG3852
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=94.55 E-value=0.36 Score=26.72 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=82.4
Q ss_pred HHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHH-HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 998325938999987997899988899762899778338978-9886269768999999999996078973899999986
Q gi|254780468|r 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 (963)
Q Consensus 409 ~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~-~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~ 487 (963)
T Consensus 11 ~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~g-----s~ll~ll~q~~~~~~~~~~~~v~l~- 84 (363)
T COG3852 11 AILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPFG-----SLLLSLLDQVLERGQPVTEYEVTLV- 84 (363)
T ss_pred HHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCCC-----CHHHHHHHHHHHHCCCCCCCEEEEE-
T ss_conf 6874557856998277828960888999999778888248778871777-----2889999899983588510102442-
Q ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 9996899987226768799988999999985305773123216630677532406
Q gi|254780468|r 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 (963)
Q Consensus 488 ~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~ 542 (963)
T Consensus 85 ~~g~~~~v~~~v~~v~~~~G~vl---le~~~~~~~~ridre~~q~a~~~a~~~L~ 136 (363)
T COG3852 85 ILGRSHIVDLTVAPVPEEPGSVL---LEFHPRDMQRRLDREQTQHAQQRAVKGLV 136 (363)
T ss_pred ECCCCCEEEEEEEECCCCCCEEE---EEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 07865237899862268997489---99532577767669999888888999999