HHsearch alignment for GI: 254780468 and conserved domain: COG4943
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].
Probab=100.00 E-value=0 Score=445.40 Aligned_cols=255 Identities=27% Similarity=0.399 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999874364100355411468822144210000000035775530230357888977996799899999999999
Q gi|254780468|r 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 (963)
Q Consensus 703 ~~~~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l 782 (963)
T Consensus 265 r~~sp~~rL~~Ai~r~e~~v~YQPIV~la~GkcvGaEAL~RW~~~dG~~vsPd~FIplAE~sG~ie~iT~~Vi~~~~~dl 344 (524)
T COG4943 265 RYLSPRRRLQRAIERRELCVHYQPIVDLATGKCVGAEALARWPQEDGTVVSPDVFIPLAEESGMIEQITDYVIRNVFRDL 344 (524)
T ss_pred HCCCHHHHHHHHHHHCCCEEEECCEEECCCCCEECHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 40076899999998268668730106735794852788744756689853768755677643866889999999999986
Q ss_pred HHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99887158998499997697794391489999999988199954699997133775099989999999998898999918
Q gi|254780468|r 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 (963)
Q Consensus 783 ~~~~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDd 862 (963)
T Consensus 345 Gd~L~~~~--~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI~lElTER~f~D-~~~~~~iI~r~ReaG~~IyIDD 421 (524)
T COG4943 345 GDLLRQHR--DLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQIALELTERTFAD-PKKMTPIILRLREAGHEIYIDD 421 (524)
T ss_pred HHHHHHCC--CEEEEEEEEEHHHCCCHHHHHHHHHHHHCCCCHHHHEEEHHHHHHCC-CHHHHHHHHHHHHCCCEEEECC
T ss_conf 89987282--40899865302202735889999998751867678410011333137-2000599999986698699735
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHH--HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCC
Q ss_conf 87764548889727998999716885399945--7999999999999779809997039989999899809989940520
Q gi|254780468|r 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 (963)
Q Consensus 863 FG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~--~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~ 940 (963)
T Consensus 422 FGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEteeQ~~~LR~~Gv~~gQGW~f 501 (524)
T COG4943 422 FGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWLRKRGVHYGQGWLF 501 (524)
T ss_pred CCCCCHHHHHHHHCCCCCEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 76760247788539950500007898764358641113899999998759727750113789999999749742344004
Q ss_pred CCCCCHHHHHHHHHHHCCCC
Q ss_conf 68999899999998516110
Q gi|254780468|r 941 ASPLGFNSILKLLKERFPLV 960 (963)
Q Consensus 941 ~~P~~~~~~~~~l~~~~~~~ 960 (963)
T Consensus 502 skaLp~q~Fi~~~~q~~a~~ 521 (524)
T COG4943 502 SKALPAQAFLDWAEQQPARE 521 (524)
T ss_pred CCCCCHHHHHHHHHHCCCCC
T ss_conf 78889899999998481221