HHsearch alignment for GI: 254780468 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=97.77 E-value=0.0054 Score=41.45 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=74.5
Q ss_pred HHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 99983259389999879978999888997628997783389789886269768999999999996078973899999986
Q gi|254780468|r 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 (963)
Q Consensus 408 ~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~ 487 (963)
T Consensus 373 E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~---lsa~ap~----~~~vf~~~~a~~~~~~~~ev~~~r 445 (712)
T COG5000 373 EAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQS---LSAIAPE----LEEVFAEAGAAARTDKRVEVKLAR 445 (712)
T ss_pred HHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHH---HHHHHHH----HHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 999815850389974787077626017888468706764402---6642137----899999765403877420100014
Q ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHH
Q ss_conf 999689998722676879998899999998530577312321
Q gi|254780468|r 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 (963)
Q Consensus 488 ~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l 529 (963)
T Consensus 446 -~g~~rtl~Vq~t~~~~d~--~~gyVvt~DDITdLV~AQRs~ 484 (712)
T COG5000 446 -EGEERTLNVQATREPEDN--GNGYVVTFDDITDLVIAQRSA 484 (712)
T ss_pred -CCCCEEEEEEEEECCCCC--CCCEEEEECCHHHHHHHHHHH
T ss_conf -787415666753214446--885699963508999999987