HHsearch alignment for GI: 254780468 and conserved domain: COG5001
>COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].
Probab=100.00 E-value=0 Score=627.00 Aligned_cols=415 Identities=27% Similarity=0.457 Sum_probs=382.2
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 66306775324066999999999999875533898489999976785798884277889999999999999834899769
Q gi|254780468|r 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 (963)
Q Consensus 530 ~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~l 609 (963)
T Consensus 225 ~~LAn~DsLTgLpNRr~ffa~Ldarlaaar~-~g~rl~lgvIDLDgFKpvND~~GH~~GDrLLi~V~~RL~A~~~ap~~a 303 (663)
T COG5001 225 DRLANLDSLTGLPNRRRFFAELDARLAAARQ-SGRRLVLGVIDLDGFKPVNDAFGHATGDRLLIEVGRRLKAFDGAPILA 303 (663)
T ss_pred HHHHCCHHHCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 5553432212885066799987788742121-287158899825677054200144412589999999987623873788
Q ss_pred EEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99806410202556699899999876555431011552546799999987764589889989999999999999987089
Q gi|254780468|r 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 (963)
Q Consensus 610 aR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g~ 689 (963)
T Consensus 304 aRLGGDEFa~i~p~~~dDA~rva~a~al~e~L~ApY~l~~~~v~vgASiGia~fP~~a~t~EqLf~RADyALYhAK~~gk 383 (663)
T COG5001 304 ARLGGDEFALIIPALEDDALRVAGARALCESLQAPYDLRGVRVQVGASIGIAPFPSGADTSEQLFERADYALYHAKQNGK 383 (663)
T ss_pred HHHCCCEEEEECCCCCCHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 87068714897357896788750469999985797346886278511244532687665299999766689998875289
Q ss_pred CCEEECCCCC--CCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCH
Q ss_conf 7405201111--10689999999874364100355411468822144210000000035775530230357888977996
Q gi|254780468|r 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 (963)
Q Consensus 690 ~~~~~~~~~~--~~~~~~~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~ 767 (963)
T Consensus 384 G~AvlFda~hE~~I~~~A~vE~~Lr~adl~~elsV~fQPiVDi~~gkt~a~EALaRWhspe~G~vpPd~F~~iAErsG~i 463 (663)
T COG5001 384 GAAVLFDARHEAAIRDMAVVEQALRSADLEQELSVHFQPIVDIVSGKTIALEALARWHSPEIGPVPPDVFIGIAERSGQI 463 (663)
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCH
T ss_conf 85687433578888899999999875545542402110113410562289999886438755789858731157645732
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHH
Q ss_conf 79989999999999999887158998499997697794391489999999988199954699997133775099989999
Q gi|254780468|r 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 (963)
Q Consensus 768 ~~ld~~vl~~a~~~l~~~~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~ 847 (963)
T Consensus 464 ~~ltR~ll~~Alrea~~W~~-----~~Rvs~NlSa~dl~~~e~v~~l~aiv~~Sc~ap~Rld~EiTETA~~~df~q~r~~ 538 (663)
T COG5001 464 VELTRLLLAKALREARAWPM-----DVRVSINLSARDLASMENVRRLLAIVSESCIAPHRLDFEITETAIVCDFDQARDA 538 (663)
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCHHHHHHH
T ss_conf 77779999999998404898-----8469984288887667749999999986057853120464215443368989999
Q ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCC--HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Q ss_conf 999998898999918877645488897279989997168853999--457999999999999779809997039989999
Q gi|254780468|r 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 (963)
Q Consensus 848 ~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~--~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~ 925 (963)
T Consensus 539 l~~l~~lGvr~aLDDFGTGySSLshLralPldKiKIDrSFV~Dl~e~P~S~~iVr~vl~LgR~l~~ecVvEGVET~A~~~ 618 (663)
T COG5001 539 LAALHELGVRTALDDFGTGYSSLSHLRALPLDKIKIDRSFVSDLEENPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRD 618 (663)
T ss_pred HHHHHHHCCCEEECCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 99999807644420025661457777507840213018877666659867999999999732157179763310088786
Q ss_pred HHHHCCCCEEECCCCCCCCCHHHHH
Q ss_conf 8998099899405206899989999
Q gi|254780468|r 926 ELTRMGCDYIQDSHVASPLGFNSIL 950 (963)
Q Consensus 926 ~l~~~G~d~~QG~~~~~P~~~~~~~ 950 (963)
T Consensus 619 ~v~~lGaT~~QGY~yarP~pa~e~r 643 (663)
T COG5001 619 RVAALGATVMQGYHYARPMPAEERR 643 (663)
T ss_pred HHHHCCCCHHCCEECCCCCCCHHHH
T ss_conf 7886173102032106899804430