HHsearch alignment for GI: 254780468 and conserved domain: PRK11829
>PRK11829 biofilm formation regulator HmsP; Provisional.
Probab=100.00 E-value=0 Score=753.56 Aligned_cols=429 Identities=23% Similarity=0.369 Sum_probs=404.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 05773123216630677532406699999999999987553389848999997678579888427788999999999999
Q gi|254780468|r 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 (963)
Q Consensus 520 t~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L 599 (963)
T Consensus 287 q~l~~~~~~~~~~~~r~p~t~lpn~~l~~~lleq~~~~~~~~--~~~~l~~v~~~tl~~~~g~~~~~q~~~Lllt~verl 364 (728)
T PRK11829 287 QLLADAYADMGRISHRFPVTELPNRSLFISLLEKEIASSTRT--DHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRI 364 (728)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999875411487546871789999999998721467--732799985466787642231567888999999999
Q ss_pred HHHCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 98348997699980641020255669989999987655543101155254679999998776458988998999999999
Q gi|254780468|r 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 (963)
Q Consensus 600 ~~~~~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~ 679 (963)
T Consensus 365 ~~ci~~~~~laqls~~eFail~~~~~~P~~A~~lA~ril~~l~eP~~~~~~~l~~sASIGIAlyP~DG~taE~LLRnADt 444 (728)
T PRK11829 365 EQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNAST 444 (728)
T ss_pred HHHCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 85257455566626762022004679807799999999998458843578734002689997589998899999997999
Q ss_pred HHHHHHHHCCCCEEECCCCCCC--HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHH
Q ss_conf 9999987089740520111110--68999999987436410035541146882214421000000003577553023035
Q gi|254780468|r 680 AMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 (963)
Q Consensus 680 Al~~Ak~~g~~~~~~~~~~~~~--~~~~~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~f 757 (963)
T Consensus 445 AMY~AK~~GRN~~~FF~p~m~~~a~~RL~lE~dLr~ALe~~EF~LyYQPqVdL~TG~IvGaEALLRW~HP~~GlIsP~eF 524 (728)
T PRK11829 445 AMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQAIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGF 524 (728)
T ss_pred HHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCEEEEEEEEEECCCCCCEECHHHH
T ss_conf 99999983898289768889999999999999999998369879996650886899999999993165999983888999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHH
Q ss_conf 78889779967998999999999999988715899849999769779439148999999998819995469999713377
Q gi|254780468|r 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 (963)
Q Consensus 758 i~~ae~~gl~~~ld~~vl~~a~~~l~~~~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~ 837 (963)
T Consensus 525 IPlAEetGLI~~Lg~WVLeqAcrqla~W~~~G~--~l~VSVNLSa~QL~~~~fv~~l~~iL~~~glpP~~LeLEITEs~l 602 (728)
T PRK11829 525 VHFAEEEGMMVPLGNWVLEEACRILADWKARGV--SLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQ 602 (728)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECHHHHCCCCHHHHHHHHHHHHCCCHHHEEEECCCCCH
T ss_conf 999984898899999999999999999986499--976999959999199839999999999869584539998079912
Q ss_pred HCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH---HHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 50999899999999988989999188776454888---972799899971688539994579999999999997798099
Q gi|254780468|r 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII 914 (963)
Q Consensus 838 ~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~---L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi 914 (963)
T Consensus 603 m~d~e~a~~~L~~Lr~lGV~IALDDFGTGYSSLsYLs~Lk~LPID~LKIDRSFV~~L~~-D~aiv~aIiaLA~~LgL~VV 681 (728)
T PRK11829 603 IQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPE-DDAIARIISCVSDVLKVRVM 681 (728)
T ss_pred HCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECHHHHCCCCC-CHHHHHHHHHHHHHCCCEEE
T ss_conf 22999999999999978998999698874363899987416999977079688657888-89999999999998799699
Q ss_pred EEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHH
Q ss_conf 970399899998998099899405206899989999999
Q gi|254780468|r 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 (963)
Q Consensus 915 AegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l 953 (963)
T Consensus 682 AEGVET~eQl~~L~~lGCd~~QGYlFSkPLP~dEFEarY 720 (728)
T PRK11829 682 AEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 720 (728)
T ss_pred EECCCHHHHHHHHHHCCCCEECCCEECCCCCHHHHHHHH
T ss_conf 967980999999997699975468426689999999999