HHsearch alignment for GI: 254780468 and conserved domain: PRK13557
>PRK13557 histidine kinase; Provisional.
Probab=99.77 E-value=3.1e-14 Score=132.01 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=106.9
Q ss_pred HHHHHHHHHCCCCEEEEEECC---CCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCEE
Q ss_conf 889999983259389999879---978999888997628997783389789886269768-9999999999960789738
Q gi|254780468|r 404 GERQSLAVLGSGDIVWDWDIV---RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRL 479 (963)
Q Consensus 404 ~er~~~al~~s~~~i~~~d~~---~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D-~~~~~~~l~~~~~~~~~~~ 479 (963)
T Consensus 27 ~~~~~~~v~~~~~~~~~~d~~~~Dg~I~~vN~af~~~tGYs~eEviGk~--~~~L~~p~~~~~~~~~~~~~i~~~--~~~ 102 (538)
T PRK13557 27 SDIFFAAVETTRMPMIVTDPRQPDNPIVFANRAFLEMTGYAAEEIIGNN--CRFLQGPETDRATVADVRDAIAER--REI 102 (538)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHHCCCCCCCHHHHHHHHHHHHCC--CCE
T ss_conf 9999999960797389935899998799983999998795999986999--877089889999999999999759--936
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 99999986999689998722676879998899999998530577312321663
Q gi|254780468|r 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 480 ~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
T Consensus 103 ~~E~~n~rKDG~~~w~~~~i~pv~d~~G~~~~~~~i~~DITerk~~E~~L~qa 155 (538)
T PRK13557 103 ATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQA 155 (538)
T ss_pred EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHH
T ss_conf 87999987999999999899999989999999999883444999999999999