HHsearch alignment for GI: 254780468 and conserved domain: TIGR02040
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=91.36 E-value=0.97 Score=23.26 Aligned_cols=165 Identities=16% Similarity=0.272 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CEEEECHHHHHHHCCCHH---HHCCCHHHHHHHCCHHHHH
Q ss_conf 999985378889997488899999832593899998799-789998889976289977---8338978988626976899
Q gi|254780468|r 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASG---SMHGPIRNWLPYIHINDRD 462 (963)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~er~~~al~~s~~~i~~~d~~~-~~~~~n~~~~~~lG~~~~---~l~~~~~~~~~~ihp~D~~ 462 (963)
T Consensus 122 AQ~AmErDYW~--lR~~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~--~~~~e~~~~~~~ 197 (453)
T TIGR02040 122 AQQAMERDYWK--LREMETRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGR--EFPQELEERERE 197 (453)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCC--HHHCCCCCCCHH
T ss_conf 98788887999--86675444335411488679985365347786799999850267750123111--343146645436
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999999960789738999999869996899987226768799988999999985305773123216630677532406
Q gi|254780468|r 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 (963)
Q Consensus 463 ~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~ 542 (963)
T Consensus 198 ~l~~~l~~~~atg~A~---~~~i~l~~~~~~~~-v~~s~~-r~~~~~~fL~-~l~~~~~~~-------------~~~~~~ 258 (453)
T TIGR02040 198 ELELLLREVRATGKAA---EVRILLAESRKELL-VVVSLF-RQDSESLFLV-RLSPAGASA-------------AVGDVL 258 (453)
T ss_pred HHHHHHHHHHHCCCCC---CCEEEECCCCCCEE-EEEEEE-ECCCCCHHHE-EECCCCCCC-------------CCCCCC
T ss_conf 8999998643015778---71787457887317-887764-0236641011-303112446-------------777766
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC-CHHHHHHHC
Q ss_conf 69999999999998755338984899999767-857988842
Q gi|254780468|r 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVL 583 (963)
Q Consensus 543 NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid-~fk~iN~~~ 583 (963)
T Consensus 259 s~~sml---~~l~~~------~pDaiv~~D~~G~i~~aN~aF 291 (453)
T TIGR02040 259 SENSML---AKLVEE------APDAIVVVDADGRIKRANEAF 291 (453)
T ss_pred CCHHHH---HHHHHH------CCCEEEEECCCCCHHHHHHHH
T ss_conf 742789---999974------298799977887328888999