HHsearch alignment for GI: 254780468 and conserved domain: cd00156
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers.
Probab=91.79 E-value=0.89 Score=23.59 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
T Consensus 5 D~~~~~~~l~~~L~~~g~~v--~~a~~g~~al~~~~~~~~dlvi~D~~mP-~--~~G~el~~~ir~~--~~~~pvI~lT~ 77 (113)
T cd00156 5 DDPLIRELLRRLLEKEGYEV--VEAEDGEEALALLAEEKPDLILLDIMMP-G--MDGLELLRRIRKR--GPDIPIIFLTA 77 (113)
T ss_pred CCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCEEEECCCCC-C--CCCHHHHHHHHHH--CCCCCEEEEEC
T ss_conf 72999999999999889999--9989999999998757999999779998-9--8726999999985--89995999978
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
T Consensus 78 ~~~~~~~~~a~~~Ga~~----yl~KP~~~~~L~~~v~~~ 112 (113)
T cd00156 78 HGDDEDAVEALKAGADD----YLTKPFSPEELLARIRAL 112 (113)
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 78999999999768978----996989999999999986