HHsearch alignment for GI: 254780468 and conserved domain: cd01948
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=100.00 E-value=0 Score=403.06 Aligned_cols=236 Identities=34% Similarity=0.603 Sum_probs=225.8
Q ss_pred HHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98743641003554114688221442100000000357755302303578889779967998999999999999988715
Q gi|254780468|r 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 (963)
Q Consensus 710 ~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~~~~~ 789 (963)
T Consensus 2 ~l~~al~~~~~~~~~QPiv~~~~~~i~~~E~l~R~~~~~~~~~~~~~f~~~a~~~~l~~~ld~~~~~~a~~~~~~~~~~- 80 (240)
T cd01948 2 DLRRALERGEFELYYQPIVDLRTGRIVGYEALLRWRHPEGGLISPAEFIPLAEETGLIVELGRWVLEEACRQLARWQAG- 80 (240)
T ss_pred HHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 5799986798899986559989999999999994487999989999999999985976899999999999999998861-
Q ss_pred CCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 89984999976977943914899999999881999546999971337750999899999999988989999188776454
Q gi|254780468|r 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 (963)
Q Consensus 790 ~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ss 869 (963)
T Consensus 81 -~~~~~l~iNi~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~Ei~E~~~~~~~~~~~~~i~~l~~~G~~iaiDdfG~~~~~ 159 (240)
T cd01948 81 -GPDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSS 159 (240)
T ss_pred -CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHEEEEECCHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf -9983899995624154067999999999980969789687703367652699999999999864996886168998766
Q ss_pred HHHHHHCCCCEEEEEHHHHCCCC--HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHH
Q ss_conf 88897279989997168853999--4579999999999997798099970399899998998099899405206899989
Q gi|254780468|r 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 (963)
Q Consensus 870 l~~L~~l~~d~iKiD~sfv~~~~--~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~ 947 (963)
T Consensus 160 ~~~l~~l~~d~iKld~~~v~~~~~~~~~~~~l~~l~~~a~~~~i~viaegVE~~~~~~~l~~lgi~~~QG~~~~~P~~~~ 239 (240)
T cd01948 160 LSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf 89998678015440899997364682238999999999998499899981850999999998599996769126589999