HHsearch alignment for GI: 254780468 and conserved domain: pfam00990
>pfam00990 GGDEF GGDEF domain. This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. It has been shown to be homologous to the adenylyl cyclase catalytic domain and has diguanylate cyclase activity. This observation correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate.
Probab=99.95 E-value=6.3e-27 Score=234.25 Aligned_cols=157 Identities=33% Similarity=0.556 Sum_probs=140.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 06775324066999999999999875533898489999976785798884277889999999999999834899769998
Q gi|254780468|r 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 (963)
Q Consensus 533 a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~laR~ 612 (963)
T Consensus 1 a~hD~lTgL~NR~~f~~~l~~~l~~~~~--~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~~~~~~R~ 78 (159)
T pfam00990 1 AAHDPLTGLPNRRYFEEELEQELQRARR--QSPLALLLLDLDNFKRINDTYGHAVGDEVLQEVAQRLSSSLRRSDLVARL 78 (159)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEC
T ss_conf 9886132812199999999999997315--99689999989755186751396788999986423331233688789965
Q ss_pred ECCCEEECCCCCCCHH--HHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0641020255669989--99998765554310115525467999999877645898899899999999999999870897
Q gi|254780468|r 613 SGNRFGIILISENNSL--KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 (963)
Q Consensus 613 ~gdeFaill~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g~~ 690 (963)
T Consensus 79 ~~deF~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~Al~~AK~~G~N 158 (159)
T pfam00990 79 GGDEFAILLPDTSLEGAQELAERIRRLLAALKIPHTLSGLPLYVTISIGIAAYPNDGEDAEDLLKRADQALYQAKNQGRN 158 (159)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 79989999799997999999999999999840740025835999998999982699998999999999999999987599
Q ss_pred C
Q ss_conf 4
Q gi|254780468|r 691 H 691 (963)
Q Consensus 691 ~ 691 (963)
T Consensus 159 r 159 (159)
T pfam00990 159 R 159 (159)
T ss_pred C
T ss_conf 9