HHsearch alignment for GI: 254780468 and conserved domain: pfam08447

>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.42  E-value=5.2e-12  Score=114.05  Aligned_cols=90  Identities=29%  Similarity=0.593  Sum_probs=84.9

Q ss_pred             EEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCC
Q ss_conf             89998889976289977833897898862697689999999999960789738999999869996899987226768799
Q gi|254780468|r  427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN  506 (963)
Q Consensus       427 ~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~  506 (963)
T Consensus         1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~dG~~~wi~~~~~~~~d~~   80 (90)
T pfam08447         1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRKDGEYRWVEARGRPIRDEN   80 (90)
T ss_pred             CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEEECCC
T ss_conf             99999899998499901107998899987190568899988788886058740468999815993999999999999999


Q ss_pred             CCEEEEEEEE
Q ss_conf             9889999999
Q gi|254780468|r  507 GDILRYIGIA  516 (963)
Q Consensus       507 g~~~~~~g~~  516 (963)
T Consensus        81 G~~~~~~Gi~   90 (90)
T pfam08447        81 GKPVRVIGVA   90 (90)
T ss_pred             CCEEEEEEEC
T ss_conf             9999999689