HHsearch alignment for GI: 254780468 and conserved domain: pfam08448
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.24 E-value=1.5e-10 Score=102.25 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=97.4
Q ss_pred HHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC
Q ss_conf 83259389999879978999888997628997783389789886269768999999999996078973899999986999
Q gi|254780468|r 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 (963)
Q Consensus 411 l~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG 490 (963)
T Consensus 1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g 76 (110)
T pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGK--TLAELLPPEDAARLERALRRALEGEEPI--DFLEELLLNG 76 (110)
T ss_pred CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCC--CCHHCCCCHHHHHHHHHHHHHHCCCCEE--EEEEEECCCC
T ss_conf 99857353799499969999347466709898998095--1210068034566777899997389558--8664302588
Q ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHH
Q ss_conf 6899987226768799988999999985305773
Q gi|254780468|r 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 (963)
Q Consensus 491 ~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~ 524 (963)
T Consensus 77 ~~~~~~~~~~pi~d~~G~~~g~v~~~~DITerKq 110 (110)
T pfam08448 77 EERHYELRLTPLRDPDGEVIGVLVISRDITERRR 110 (110)
T ss_pred CCEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC
T ss_conf 5200043576689899999999999998833129