HHsearch alignment for GI: 254780468 and conserved domain: smart00086
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=97.64 E-value=0.00019 Score=53.06 Aligned_cols=43 Identities=28% Similarity=0.760 Sum_probs=40.7
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHH
Q ss_conf 9999998699968999872267687999889999999853057
Q gi|254780468|r 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 (963)
Q Consensus 480 ~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~ 522 (963)
T Consensus 1 ~~e~r~~~~dG~~~w~~~~~~~~~~~~g~~~~~i~~~~DIte~ 43 (43)
T smart00086 1 TVEYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITER 43 (43)
T ss_pred CEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 9699999889999999999999999898999999999717798