HHsearch alignment for GI: 254780468 and conserved domain: smart00091

>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).

Probab=97.85  E-value=4.2e-05  Score=58.40  Aligned_cols=65  Identities=22%  Similarity=0.335  Sum_probs=58.2

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             8999998325938999987997899988899762899778338978988626976899999999999
Q gi|254780468|r  405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF  471 (963)
Q Consensus       405 er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~  471 (963)
T Consensus         1 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~--~~~~~~~~~~~~~~~~~~~~~   65 (67)
T smart00091        1 ERLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGK--SLLELIHPEDREEVQEALQRL   65 (67)
T ss_pred             CHHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHHH
T ss_conf             97999999655798588699948998859999889099999599--899946998999999999987