HHsearch results for GI: 254780468 and protein with PDBid: 1mzu_A
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.08 E-value=1.6e-05 Score=60.01 Aligned_cols=98 Identities=9% Similarity=-0.082 Sum_probs=73.3
Q ss_pred HHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 999983259389999879978999888997628997783389789886269768-9999999999960789738999999
Q gi|254780468|r 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRV 485 (963)
Q Consensus 407 ~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D-~~~~~~~l~~~~~~~~~~~~~e~r~ 485 (963)
...+++++++||+..|.++.++++|+++++++|++++++.|.. +.+.++|.+ .+.+.+.+.....+.......++..
T Consensus 24 ~~a~ld~~p~Gv~~~D~dg~I~~~N~aa~~ilG~s~eeliGr~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 101 (129)
T 1mzu_A 24 GTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRN--FFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVF 101 (129)
T ss_dssp -CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEE
T ss_pred HHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9999967990699998999799994899999784979986994--99953970126899999988752687636999996
Q ss_pred ECCCCCEEEEEEEEEEEECCCCCE
Q ss_conf 869996899987226768799988
Q gi|254780468|r 486 RAADNQFHWMIIRIRPMSNSNGDI 509 (963)
Q Consensus 486 r~~dG~~~w~~~~~~~i~~~~g~~ 509 (963)
+++|..+|++++.... .+|+.
T Consensus 102 -~~~g~~~~v~v~l~~~--~~~~~ 122 (129)
T 1mzu_A 102 -DFQMAPVRVQIRMQNA--GVPDR 122 (129)
T ss_dssp -ECSSCEEEEEEEEEEC--SSTTE
T ss_pred -ECCCCEEEEEEEEEEE--CCCCE
T ss_conf -0389479999999992--58998