HHsearch results for GI: 254780468 and protein with PDBid: 1n9l_A

>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.24  E-value=3.1e-10  Score=98.06  Aligned_cols=106  Identities=11%  Similarity=0.139  Sum_probs=86.8

Q ss_pred             CCCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf             2593899998---7997899988899762899778338978988626976899999999999607897389999998699
Q gi|254780468|r  413 GSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD  489 (963)
Q Consensus       413 ~s~~~i~~~d---~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~d  489 (963)
                      +..++++..|   +++.++++|+++++++||+++++.|..  +..+.+|++.+.....+...+.+ +..++.|++.+++|
T Consensus         1 ~~~~~~vi~Da~~pd~~Ii~vN~a~~~~~Gy~~~eliG~~--~~~l~~~~~~~~~~~~~~~~l~~-g~~~~~e~~~~~kd   77 (109)
T 1n9l_A            1 GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN--CRFLQGEGTDPKEVQKIRDAIKK-GEACSVRLLNYRKD   77 (109)
T ss_dssp             CCSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTCCHHHHHHHHHHHHH-TCCEEEEEEEECTT
T ss_pred             CCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHHCCCCCCCHHHHHHHHHHHCC-CCEEEEEEEEECCC
T ss_conf             9765199995989989699997899998895989975997--54121655798999999875506-96699999988799


Q ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEEECHH
Q ss_conf             96899987226768799988999999985305
Q gi|254780468|r  490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITE  521 (963)
Q Consensus       490 G~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~  521 (963)
                      |+.+|++.+..|++|++|++.+++++.+|||+
T Consensus        78 G~~~~~~~~~~pv~d~~G~~~~~i~~~~DITa  109 (109)
T 1n9l_A           78 GTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS  109 (109)
T ss_dssp             SCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf             98999999999999999899999999998297