HHsearch results for GI: 254780468 and protein with PDBid: 1nwz_A
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.26 E-value=1.1e-05 Score=61.32 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=73.2
Q ss_pred HHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 99983259389999879978999888997628997783389789886269768-99999999999607897389999998
Q gi|254780468|r 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVR 486 (963)
Q Consensus 408 ~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D-~~~~~~~l~~~~~~~~~~~~~e~r~r 486 (963)
...+++.++|++..|.+|.++++|+++++++|++++++.|. ++.+.++|++ .+.+...+..........-..++. .
T Consensus 20 ~~~Ld~lp~gii~lD~~G~I~~~N~a~e~l~G~~~ee~iG~--~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~-~ 96 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGK--NFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYT-F 96 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTS--BCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEE-E
T ss_pred HHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHEECCCCCCHHHHHHHHHHHHCCCCEEEEEEE-E
T ss_conf 99986788249999599998860068998768576877597--88566787334689999999999759962799999-9
Q ss_pred CCCCCEEEEEEEEEEEECCCC
Q ss_conf 699968999872267687999
Q gi|254780468|r 487 AADNQFHWMIIRIRPMSNSNG 507 (963)
Q Consensus 487 ~~dG~~~w~~~~~~~i~~~~g 507 (963)
+++|..+|++++.....+.+|
T Consensus 97 ~~~g~~~~V~v~~~~~~~g~~ 117 (125)
T 1nwz_A 97 DYQMTPTKVKVHMKKALSGDS 117 (125)
T ss_dssp CTTSCCEEEEEEEEECSSSSE
T ss_pred ECCCCEEEEEEEEEEEECCCE
T ss_conf 139949999999999547996