HHsearch results for GI: 254780468 and protein with PDBid: 1wa9_A
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.21 E-value=3.9e-11 Score=105.26 Aligned_cols=127 Identities=8% Similarity=0.049 Sum_probs=98.1
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHC----CCCCE
Q ss_conf 88899999832593899998799789998889976289977833897898862697689999999999960----78973
Q gi|254780468|r 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG----YRRGR 478 (963)
Q Consensus 403 ~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~----~~~~~ 478 (963)
..+++..+++.+++++|.+|.++..+++|+.+..++|+++.++.+. .|...+||+|.+......+.... ..+..
T Consensus 146 ~~~~~~~l~~~~~~~i~~~d~d~~~~~~n~~~~~~~g~~~~e~~g~--~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 1wa9_A 146 YKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGR--SIMDFYHHEDLSVMKETYETVMKKGQTAGASF 223 (368)
T ss_dssp CCSTTCBCCTTSCEEEEEEETTCBEEEECGGGHHHHCCCHHHHTTS--BGGGGBCTTTHHHHHHHHHHHHHHTTSTTCCE
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 6767899985197579998499988972244677508675774488--54332488889999999999998365568852
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 89999998699968999872267687999889999999853057731232166
Q gi|254780468|r 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 479 ~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
...++|++++||.++|++.++.++++..|+..+++++.+|||+++++++.+..
T Consensus 224 ~~~e~r~~~kdG~~~~~~~~~~~~~~~~g~~~~~i~~~~dIt~~~~~e~~l~~ 276 (368)
T 1wa9_A 224 CSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEA 276 (368)
T ss_dssp ECCCEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSSCTTSC
T ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHH
T ss_conf 56455448579959999997599986999858999999991407654999975