HHsearch results for GI: 254780468 and protein with PDBid: 1wa9_A

>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.21  E-value=3.9e-11  Score=105.26  Aligned_cols=127  Identities=8%  Similarity=0.049  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHC----CCCCE
Q ss_conf             88899999832593899998799789998889976289977833897898862697689999999999960----78973
Q gi|254780468|r  403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG----YRRGR  478 (963)
Q Consensus       403 ~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~----~~~~~  478 (963)
                      ..+++..+++.+++++|.+|.++..+++|+.+..++|+++.++.+.  .|...+||+|.+......+....    ..+..
T Consensus       146 ~~~~~~~l~~~~~~~i~~~d~d~~~~~~n~~~~~~~g~~~~e~~g~--~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~  223 (368)
T 1wa9_A          146 YKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGR--SIMDFYHHEDLSVMKETYETVMKKGQTAGASF  223 (368)
T ss_dssp             CCSTTCBCCTTSCEEEEEEETTCBEEEECGGGHHHHCCCHHHHTTS--BGGGGBCTTTHHHHHHHHHHHHHHTTSTTCCE
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             6767899985197579998499988972244677508675774488--54332488889999999999998365568852


Q ss_pred             EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf             89999998699968999872267687999889999999853057731232166
Q gi|254780468|r  479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC  531 (963)
Q Consensus       479 ~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~  531 (963)
                      ...++|++++||.++|++.++.++++..|+..+++++.+|||+++++++.+..
T Consensus       224 ~~~e~r~~~kdG~~~~~~~~~~~~~~~~g~~~~~i~~~~dIt~~~~~e~~l~~  276 (368)
T 1wa9_A          224 CSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEA  276 (368)
T ss_dssp             ECCCEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSSCTTSC
T ss_pred             EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHH
T ss_conf             56455448579959999997599986999858999999991407654999975