HHsearch results for GI: 254780468 and protein with PDBid: 3b33_A

>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein, APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.37  E-value=4.8e-06  Score=64.29  Aligned_cols=109  Identities=8%  Similarity=-0.018  Sum_probs=78.4

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             89999983259389999879978999888997628997783389789886269768999999999996078973899999
Q gi|254780468|r  405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR  484 (963)
Q Consensus       405 er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r  484 (963)
                      +....++++.++||+..|.++.++++|+++++++|++++++.|+..  .+.+++++...  ..+.......+.....+..
T Consensus         7 ~~~~~il~~~~~~viv~D~~g~I~~~N~aa~~llG~s~~~~~g~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   82 (115)
T 3b33_A            7 SLPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSL--SQLIQHASLDL--ALLTQPLQSGQSITDSDVT   82 (115)
T ss_dssp             CHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBH--HHHCSEEECCT--HHHHHHHHHCCCEEEEEEE
T ss_pred             HHHHHHHHCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCH--HHHCCCCHHHH--HHHHHHHHCCCCEEEEEEE
T ss_conf             9999998504666999989999999995561300101465529558--99468816788--9999999829956889999


Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf             986999689998722676879998899999998530
Q gi|254780468|r  485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT  520 (963)
Q Consensus       485 ~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt  520 (963)
                       .+++|+.+|++++..|+.+++|..  ++..++||.
T Consensus        83 -~~~~G~~~~v~v~~spi~~~~~~~--ili~~rdid  115 (115)
T 3b33_A           83 -FVVDGRPLMLEVTVSPITWQRQLM--LLVEMRKID  115 (115)
T ss_dssp             -EEETTEEEEEEEEEEEEEETTEEE--EEEEEEEC-
T ss_pred             -EECCCEEEEEEEEEEEEEECCCEE--EEEEEEECC
T ss_conf             -960990999999999999799619--999999689