HHsearch results for GI: 254780468 and protein with PDBid: 3cfy_A
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.76 E-value=0.31 Score=25.56 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980-99970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAeg 917 (963)
+++.....+.+.|++.|+++. -+.+|-..+..+.+-++|.|=+|-.+ -+.+.-.+++.+-+. ..++. ++..+
T Consensus 12 Dd~~~~~~l~~~L~~~g~~v~--~a~~~~eal~~l~~~~pdlillD~~m---p~~~G~~l~~~ir~~--~~~~piI~lt~ 84 (137)
T 3cfy_A 12 DSTSLAILYKQYVKDEPYDIF--HVETGRDAIQFIERSKPQLIILDLKL---PDMSGEDVLDWINQN--DIPTSVIIATA 84 (137)
T ss_dssp SCTTHHHHHHHHTTTSSSEEE--EESSHHHHHHHHHHHCCSEEEECSBC---SSSBHHHHHHHHHHT--TCCCEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEECCC---CCCCHHHHHHHHHHH--CCCCCEEEEEC
T ss_conf 999999999999998799999--98999999999984799999983899---999889999999974--89984899987
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++. |+.||...+++...++.
T Consensus 85 ~~~~~~~~~~~~~Ga~d----yl~KP~~~~~L~~~i~~ 118 (137)
T 3cfy_A 85 HGSVDLAVNLIQKGAED----FLEKPINADRLKTSVAL 118 (137)
T ss_dssp SCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 79999999998679868----99898999999999999