HHsearch results for GI: 254780468 and protein with PDBid: 3cu5_A
>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=90.15 E-value=0.39 Score=24.68 Aligned_cols=108 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CHHHHHH-HHHHHHHCCCEE-EEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9998999-999999889899-99188776454888972799899971688539994579999999999997798099970
Q gi|254780468|r 840 NPERSRL-LLGRLRKIGISL-TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917 (963)
Q Consensus 840 ~~~~~~~-~~~~l~~~G~~i-alDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAeg 917 (963)
|....++ +...|...|+.+ .++....|...+..+.+.++|.|=+|-.+ -+ -+.-.+++.+-+...... -++..|
T Consensus 10 D~~~~r~~l~~~L~~~~~~~~~v~~a~~g~eal~~~~~~~pdlillDi~M-P~--~dG~el~~~i~~~~p~~~-iI~lT~ 85 (141)
T 3cu5_A 10 DEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRM-PR--MDGIELVDNILKLYPDCS-VIFMSG 85 (141)
T ss_dssp SCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCC-SS--SCHHHHHHHHHHHCTTCE-EEEECC
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC-CC--CCHHHHHHHHHHHCCCCC-EEEEEC
T ss_conf 99999999999999659984599897999999999986799989973689-99--999999999997587993-999978
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++. |+.||...+++...+++
T Consensus 86 ~~~~~~~~~a~~~Ga~~----yl~KP~~~~~L~~~i~~ 119 (141)
T 3cu5_A 86 YSDKEYLKAAIKFRAIR----YVEKPIDPSEIMDALKQ 119 (141)
T ss_dssp STTTCCC------CCCE----EECSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 79999999999869998----99798999999999999