HHsearch results for GI: 254780468 and protein with PDBid: 3ewk_A
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.20 E-value=2.6e-10 Score=98.68 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=102.5
Q ss_pred EEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 99998799789998889976289977833897898862697689999999999960789738999999869996899987
Q gi|254780468|r 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 (963)
Q Consensus 418 i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w~~~ 497 (963)
|..+|.+|.++++|+++++++|++++++.|.. +..+.+|++.+.+.......... +.....+.+.++++|+.+|+..
T Consensus 2 i~i~D~~G~I~~~N~a~~~l~G~~~~eliG~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQD--HRIVNSGYHGKAYIRDMWRTISR-GNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSB--GGGGCCSCSCHHHHHHHHHHHTT-TCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCHHHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCCEEEEEE
T ss_conf 99997999999984899998893999995998--88928941357889999999743-8722358999723542587665
Q ss_pred EEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-H
Q ss_conf 226768799988999999985305773123216630677532406699999999999987553389848999997678-5
Q gi|254780468|r 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-Y 576 (963)
Q Consensus 498 ~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~-f 576 (963)
+..|+.+..|...++++...|+|++++.++++. ++...++ ..+.+++++|.+. +
T Consensus 79 ~~~~i~~~~g~~~~~~~~~~d~~~~~~~~~~~~-------------------~~~~~~~------~~~~~i~~~D~~g~i 133 (227)
T 3ewk_A 79 TIVPLMDNAGKPRQYISIRRDITAQKEAEAQLA-------------------RLKQAMD------ANSEMILLTDRAGRI 133 (227)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTTTHHHHHHH-------------------HHHHHHH------TCCSEEEEECTTSCE
T ss_pred EEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHH-------------------HHHHHHH------HHHHHHEEECCCCEE
T ss_conf 666764047871000479842788999999987-------------------6799999------876465377699779
Q ss_pred HHHHHH
Q ss_conf 798884
Q gi|254780468|r 577 KKINDV 582 (963)
Q Consensus 577 k~iN~~ 582 (963)
..+|+.
T Consensus 134 ~~~N~~ 139 (227)
T 3ewk_A 134 IYANPA 139 (227)
T ss_dssp EEECHH
T ss_pred EEECHH
T ss_conf 999789