HHsearch results for GI: 254780468 and protein with PDBid: 3f1p_B
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A* 2k7s_A 2a24_B
Probab=99.33 E-value=2e-11 Score=107.56 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=98.4
Q ss_pred CCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCE
Q ss_conf 25938999987997899988899762899778338978988626976899999999999607897389999998699968
Q gi|254780468|r 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 (963)
Q Consensus 413 ~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~ 492 (963)
+.-+-|...|.+|.++++||++++++||+++++.+. .|.+.+||+|++...+.+.......+.....+++++++||++
T Consensus 10 ~~~~fI~~~~~dG~i~~~N~~~~~i~Gy~~~el~g~--~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 87 (121)
T 3f1p_B 10 QPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGK--NIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEW 87 (121)
T ss_dssp CCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTS--BGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEECTTSCE
T ss_pred CCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHHHH--HHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCE
T ss_conf 995399999899999999989998879699998531--244424864214776520000001244310589988799979
Q ss_pred EEEEEEEEEEECC-CCCEEEEEEEEEECHHHHH
Q ss_conf 9998722676879-9988999999985305773
Q gi|254780468|r 493 HWMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524 (963)
Q Consensus 493 ~w~~~~~~~i~~~-~g~~~~~~g~~~DIt~~~~ 524 (963)
+|++.+++|++|. +|++..++|+.+|||++|+
T Consensus 88 ~~v~~~~~~i~d~~~~~~~~ii~~~~dIt~~k~ 120 (121)
T 3f1p_B 88 LWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEECCCCCC
T ss_conf 999999999994899949999999999941206