HHsearch results for GI: 254780468 and protein with PDBid: 3gdi_A
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.59 E-value=1.7e-08 Score=83.99 Aligned_cols=121 Identities=8% Similarity=0.062 Sum_probs=98.1
Q ss_pred HHHHCCCCEEEEEE-CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 99832593899998-79978999888997628997783389789886269768999999999996078973899999986
Q gi|254780468|r 409 LAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 (963)
Q Consensus 409 ~al~~s~~~i~~~d-~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~ 487 (963)
.+++++...++..+ .+|.++|+|+++++++||+++++.|. +|.+++||+|++.+...+.............+.+.+.
T Consensus 19 ~~l~~~~~f~~vv~~~dG~i~yvN~~~~~~lGys~eel~g~--~~~dlihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 96 (309)
T 3gdi_A 19 YIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDA--KFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQ 96 (309)
T ss_dssp ----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCS--BGGGGBCTTTHHHHHHHTCTTSSCBCC----------
T ss_pred HHHHHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 99983698799999799879999779999869599999599--8989478346889999876653378764430566663
Q ss_pred CCCCEEEEEEEEEEEECCCC----CEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 99968999872267687999----889999999853057731232166
Q gi|254780468|r 488 ADNQFHWMIIRIRPMSNSNG----DILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 488 ~dG~~~w~~~~~~~i~~~~g----~~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
++|..+|+.++..+..+..+ .+.++.|+.+|+++++..++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~~~ 144 (309)
T 3gdi_A 97 ECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCC 144 (309)
T ss_dssp ----CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEE
T ss_pred CCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCHHHHHH
T ss_conf 278724899998751036787425899999999532210011036789