HHsearch results for GI: 254780468 and protein with PDBid: 3mqq_A
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.14 E-value=4.8e-10 Score=96.49 Aligned_cols=114 Identities=10% Similarity=0.059 Sum_probs=89.9
Q ss_pred HHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCC-HHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 999983259389999879978999888997628997783389789886269-7689999999999960789738999999
Q gi|254780468|r 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRV 485 (963)
Q Consensus 407 ~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ih-p~D~~~~~~~l~~~~~~~~~~~~~e~r~ 485 (963)
++.++++++.||+. +.+|.++++|+++++++|++++++.+... .++.+ +++.............. +...+.|+++
T Consensus 5 ~~~l~~~~p~gI~~-~~dg~i~~~N~a~~~l~G~~~~~l~g~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~ 80 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SRDRVIEDCNDELAAIFRCARADLIGRSF--EVLYPSSDEFERIGERISPVMIA-HGSYADDRIM 80 (120)
T ss_dssp HHHHHHHCSSEEEE-EETTEEEEECHHHHHHTTSCHHHHTTCBG--GGGSSSHHHHHHHHHHHHHHHHH-HSCEEEEEEE
T ss_pred HHHHHHCCCCEEEE-ECCCEEEEECHHHHHHHCCCHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHH-CCCCCCEEEE
T ss_conf 99999729944999-88992999959999875468667414564--31002433202223678887752-2544100021
Q ss_pred ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHH
Q ss_conf 8699968999872267687999889999999853057731
Q gi|254780468|r 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 (963)
Q Consensus 486 r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~ 525 (963)
+++||+.+|+++++.++ +.+|+..+++++++||||+|+.
T Consensus 81 ~~~~G~~~~v~~~~~~~-~~~~~~~~~~~~~~DITe~kr~ 119 (120)
T 3mqq_A 81 KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred ECCCCEEEEEEEEEEEE-CCCCCEEEEEEEEEECCHHHHC
T ss_conf 44798399999999998-3699899999999999788855