Query gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 963
No_of_seqs 310 out of 9950
Neff 9.1
Searched_HMMs 23785
Date Tue May 31 19:53:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780468.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hvb_A Protein FIMX; EAL phosp 100.0 0 0 652.4 20.1 423 524-949 4-430 (437)
2 3hv8_A Protein FIMX; EAL phosp 100.0 0 0 404.0 19.2 245 703-949 16-261 (268)
3 2r6o_A Putative diguanylate cy 100.0 0 0 396.5 21.8 259 702-960 22-283 (294)
4 3gfz_A Klebsiella pneumoniae B 100.0 0 0 401.0 13.3 260 678-946 133-397 (413)
5 3pfm_A Ggdef domain protein; P 100.0 1.4E-45 0 382.7 18.5 237 702-946 3-242 (243)
6 2bas_A YKUI protein; EAL domai 100.0 6.4E-44 0 369.4 12.8 236 706-946 24-263 (431)
7 3kzp_A LMO0111 protein, putati 100.0 2.5E-43 0 364.7 10.6 221 715-946 1-235 (235)
8 1w25_A Stalked-cell differenti 100.0 2.4E-36 1E-40 308.4 18.0 179 516-696 271-452 (459)
9 3ezu_A Ggdef domain protein; m 100.0 2.9E-29 1.2E-33 251.4 11.0 172 518-694 167-341 (342)
10 3bre_A Probable two-component 100.0 3.1E-27 1.3E-31 235.0 18.6 180 521-702 159-344 (358)
11 3mtk_A Diguanylate cyclase/pho 99.9 1.7E-26 7.1E-31 229.1 18.1 167 528-701 2-168 (178)
12 3hva_A Protein FIMX; ggdef dig 99.9 7.2E-26 3E-30 224.0 16.5 173 524-698 4-177 (177)
13 3ign_A Diguanylate cyclase; gg 99.9 1.9E-25 8.2E-30 220.5 17.5 169 527-697 2-171 (177)
14 3icl_A EAL/ggdef domain protei 99.9 1.7E-24 7E-29 213.0 16.6 167 535-702 1-167 (171)
15 3i5c_A Fusion of general contr 99.9 1.1E-23 4.4E-28 206.5 18.1 175 524-700 21-201 (206)
16 3hvw_A Diguanylate-cyclase (DG 99.8 1.2E-19 5E-24 173.9 12.7 159 535-701 2-164 (176)
17 3nja_A Probable ggdef family p 99.8 2.6E-17 1.1E-21 155.0 15.4 121 403-524 5-125 (125)
18 3mr0_A Sensory box histidine k 99.8 1.6E-17 6.6E-22 156.8 13.4 134 398-532 2-135 (142)
19 3jyb_A Sensor protein; beta ba 99.7 8.4E-17 3.5E-21 150.9 15.1 133 47-183 7-143 (145)
20 2xbz_A RETS-hybrid sensor kina 99.7 2.9E-17 1.2E-21 154.7 10.4 132 47-182 33-168 (171)
21 3eeh_A Putative light and redo 99.7 5.8E-16 2.4E-20 144.2 14.6 123 396-520 2-125 (125)
22 3gdi_A Period circadian protei 99.6 6.3E-14 2.6E-18 127.8 15.4 144 410-555 160-304 (309)
23 3h9w_A Diguanylate cyclase wit 99.6 3.9E-13 1.6E-17 121.4 16.2 110 414-525 2-112 (115)
24 2wkq_A NPH1-1, RAS-related C3 99.5 8E-13 3.4E-17 118.9 13.4 126 407-535 13-141 (332)
25 2gj3_A Nitrogen fixation regul 99.5 2.8E-12 1.2E-16 114.5 14.8 115 404-522 4-119 (120)
26 3lyx_A Sensory BOX/ggdef domai 99.4 6E-12 2.5E-16 111.8 15.4 117 405-524 7-123 (124)
27 2v0u_A NPH1-1, LOV2; kinase, t 99.4 3.6E-12 1.5E-16 113.7 13.6 121 408-531 5-128 (146)
28 2z6d_A Phototropin-2; PAS-fold 99.4 8.8E-12 3.7E-16 110.5 14.7 121 404-528 5-129 (130)
29 1v9y_A Heme PAS sensor protein 99.4 4.9E-12 2.1E-16 112.5 10.6 130 399-532 34-166 (167)
30 3icy_A Sensor protein; sensory 99.4 3.4E-12 1.4E-16 113.8 9.5 116 402-520 1-118 (118)
31 2vlg_A Sporulation kinase A; h 99.4 5.1E-12 2.2E-16 112.4 10.3 109 409-523 3-111 (111)
32 2pr5_A Blue-light photorecepto 99.3 3.1E-11 1.3E-15 106.1 13.3 117 409-530 3-122 (132)
33 3f1p_B ARYL hydrocarbon recept 99.3 2E-11 8.5E-16 107.6 12.1 110 413-524 10-120 (121)
34 3bwl_A Sensor protein; structu 99.3 1.8E-10 7.5E-15 100.0 15.2 123 392-520 4-126 (126)
35 1d06_A Nitrogen fixation regul 99.3 2.4E-10 1E-14 98.9 14.3 123 394-520 5-130 (130)
36 2r78_A Sensor protein; sensory 99.2 6.3E-11 2.7E-15 103.6 10.7 115 397-520 3-117 (117)
37 1n9l_A PHOT-LOV1, putative blu 99.2 3.1E-10 1.3E-14 98.1 14.0 106 413-521 1-109 (109)
38 3f1p_A Endothelial PAS domain- 99.2 7.3E-11 3.1E-15 103.1 10.8 108 414-524 8-116 (117)
39 3mxq_A Sensor protein; PSI2, M 99.2 5.4E-10 2.3E-14 96.1 14.3 129 396-527 13-152 (152)
40 1wa9_A Period circadian protei 99.2 3.9E-11 1.6E-15 105.3 8.3 127 403-531 146-276 (368)
41 1byw_A Protein (human ERG pota 99.2 3.6E-10 1.5E-14 97.5 13.3 106 416-522 2-110 (110)
42 3mjq_A Uncharacterized protein 99.2 2.7E-10 1.2E-14 98.5 12.1 114 409-528 3-116 (126)
43 3cax_A Uncharacterized protein 99.2 1.6E-10 6.6E-15 100.4 10.8 127 403-538 237-363 (369)
44 3ewk_A Sensor protein; PAS dom 99.2 2.6E-10 1.1E-14 98.7 11.9 137 418-582 2-139 (227)
45 2vv6_A FIXL, sensor protein FI 99.2 4.8E-10 2E-14 96.5 12.8 115 414-532 2-119 (119)
46 3luq_A Sensor protein; PAS, hi 99.2 1.4E-09 6.1E-14 92.6 14.3 113 404-520 2-114 (114)
47 3k3c_A Protein RV1364C/MT1410; 99.1 5.5E-10 2.3E-14 96.0 11.6 130 399-532 11-145 (158)
48 3mqq_A Transcriptional regulat 99.1 4.8E-10 2E-14 96.5 11.2 114 407-525 5-119 (120)
49 3mfx_A Sensory BOX/ggdef famil 99.1 9.9E-10 4.2E-14 93.9 10.8 116 402-522 4-125 (129)
50 3kx0_X Uncharacterized protein 99.1 9.2E-10 3.9E-14 94.2 9.9 131 398-532 30-165 (185)
51 2qkp_A Uncharacterized protein 99.1 2.5E-09 1.1E-13 90.7 12.0 125 403-532 17-143 (151)
52 3olo_A Two-component sensor hi 98.9 3.1E-08 1.3E-12 81.9 12.9 105 406-520 14-118 (118)
53 3ewk_A Sensor protein; PAS dom 98.9 7.3E-08 3.1E-12 78.9 14.5 116 400-518 106-227 (227)
54 3clo_A Transcriptional regulat 98.9 5.9E-08 2.5E-12 79.7 13.8 131 399-529 26-173 (258)
55 3fc7_A HTR-like protein, senso 98.9 2.5E-08 1E-12 82.7 11.6 113 399-520 13-125 (125)
56 3d72_A Vivid PAS protein VVD; 98.9 8E-08 3.4E-12 78.6 13.5 100 415-516 35-147 (149)
57 3gdi_A Period circadian protei 98.6 1.7E-08 7.2E-13 84.0 3.0 121 409-531 19-144 (309)
58 3fg8_A Uncharacterized protein 98.6 2.6E-07 1.1E-11 74.4 8.9 104 408-522 15-118 (118)
59 1oj5_A Steroid receptor coacti 98.4 3E-07 1.3E-11 73.9 6.1 103 416-521 8-114 (132)
60 1wa9_A Period circadian protei 98.4 3.2E-09 1.3E-13 89.9 -4.3 116 415-532 6-146 (368)
61 3b33_A Sensor protein; structu 98.4 4.8E-06 2E-10 64.3 10.8 109 405-520 7-115 (115)
62 1ll8_A PAS kinase; PAS domain, 98.3 2.7E-07 1.1E-11 74.4 4.0 104 412-519 5-112 (114)
63 1nwz_A PYP, photoactive yellow 98.3 1.1E-05 4.7E-10 61.3 10.6 97 408-507 20-117 (125)
64 3a0r_A Sensor protein; four he 98.2 2.2E-06 9.3E-11 67.0 6.3 113 409-531 12-125 (349)
65 3a0s_A Sensor protein; PAS-fol 98.1 3.7E-05 1.6E-09 57.1 10.8 94 415-518 2-96 (96)
66 1mzu_A PPR; photoactive yellow 98.1 1.6E-05 6.8E-10 60.0 8.5 98 407-509 24-122 (129)
67 2w0n_A Sensor protein DCUS; si 97.7 4.6E-06 1.9E-10 64.4 0.6 110 399-520 9-118 (118)
68 2jhe_A Transcription regulator 97.5 1.5E-05 6.2E-10 60.3 0.8 108 402-522 77-188 (190)
69 2ool_A Sensor protein; bacteri 97.0 0.0076 3.2E-07 38.5 9.6 146 417-616 44-191 (337)
70 1i3c_A Response regulator RCP1 96.5 0.04 1.7E-06 32.6 10.8 110 839-955 16-133 (149)
71 3kht_A Response regulator; PSI 96.2 0.066 2.8E-06 30.9 10.2 109 839-954 13-123 (144)
72 3heb_A Response regulator rece 96.1 0.06 2.5E-06 31.3 9.8 110 839-955 12-131 (152)
73 3c3m_A Response regulator rece 96.1 0.077 3.2E-06 30.4 10.5 110 839-957 11-121 (138)
74 1mb3_A Cell division response 95.9 0.09 3.8E-06 29.8 10.5 109 839-956 9-118 (124)
75 3cnb_A DNA-binding response re 95.9 0.088 3.7E-06 29.9 9.7 109 839-956 16-127 (143)
76 1k68_A Phytochrome response re 95.8 0.096 4E-06 29.6 9.9 110 839-955 10-127 (140)
77 1p6q_A CHEY2; chemotaxis, sign 95.8 0.075 3.2E-06 30.5 9.2 113 839-959 14-127 (129)
78 1jbe_A Chemotaxis protein CHEY 95.7 0.1 4.4E-06 29.3 10.1 109 839-955 12-121 (128)
79 3gl9_A Response regulator; bet 95.6 0.11 4.7E-06 29.0 11.6 109 839-956 10-119 (122)
80 1dz3_A Stage 0 sporulation pro 95.5 0.12 5.1E-06 28.8 9.3 116 839-962 10-130 (130)
81 2gkg_A Response regulator homo 95.5 0.069 2.9E-06 30.8 7.9 111 839-957 13-123 (127)
82 1k66_A Phytochrome response re 95.5 0.1 4.4E-06 29.3 8.8 110 839-955 14-134 (149)
83 2qvg_A Two component response 95.4 0.087 3.6E-06 30.0 8.2 110 839-955 15-131 (143)
84 1srr_A SPO0F, sporulation resp 95.4 0.14 5.8E-06 28.3 10.2 112 839-961 11-123 (124)
85 2zay_A Response regulator rece 95.3 0.14 5.8E-06 28.4 9.1 109 839-956 16-125 (147)
86 3lte_A Response regulator; str 95.3 0.15 6.2E-06 28.1 10.8 108 839-955 14-121 (132)
87 3i42_A Response regulator rece 95.2 0.078 3.3E-06 30.3 7.5 108 839-956 11-119 (127)
88 3gt7_A Sensor protein; structu 95.1 0.16 6.8E-06 27.8 12.0 111 839-958 15-126 (154)
89 2qxy_A Response regulator; reg 94.7 0.2 8.6E-06 27.0 10.9 107 839-957 12-119 (142)
90 3nhm_A Response regulator; pro 94.6 0.15 6.2E-06 28.1 7.5 110 839-957 11-120 (133)
91 1tmy_A CHEY protein, TMY; chem 94.5 0.23 9.5E-06 26.6 11.1 107 839-955 10-117 (120)
92 2p0o_A Hypothetical protein DU 94.0 0.079 3.3E-06 30.3 5.2 20 841-860 157-176 (372)
93 3crn_A Response regulator rece 93.9 0.29 1.2E-05 25.7 12.2 108 839-957 11-119 (132)
94 3et6_A Soluble guanylyl cyclas 93.8 0.18 7.8E-06 27.3 6.7 101 562-662 6-114 (190)
95 3cfy_A Putative LUXO repressor 93.8 0.31 1.3E-05 25.6 8.5 106 839-955 12-118 (137)
96 1qkk_A DCTD, C4-dicarboxylate 93.7 0.31 1.3E-05 25.5 10.4 106 839-955 11-117 (155)
97 2jk1_A HUPR, hydrogenase trans 93.5 0.33 1.4E-05 25.2 8.7 103 842-955 11-115 (139)
98 3cg4_A Response regulator rece 93.3 0.098 4.1E-06 29.5 4.6 111 839-958 15-126 (142)
99 3m6m_D Sensory/regulatory prot 93.2 0.37 1.5E-05 24.9 12.7 110 839-957 22-134 (143)
100 1dcf_A ETR1 protein; beta-alph 93.1 0.38 1.6E-05 24.8 11.7 109 839-957 15-127 (136)
101 2j48_A Two-component sensor ki 93.1 0.35 1.5E-05 25.1 7.2 108 839-958 9-117 (119)
102 2pz0_A Glycerophosphoryl diest 93.0 0.39 1.6E-05 24.7 14.5 135 795-956 115-251 (252)
103 1azs_A VC1; complex (lyase/hyd 92.9 0.41 1.7E-05 24.6 7.9 99 565-663 34-139 (220)
104 3b2n_A Uncharacterized protein 92.8 0.41 1.7E-05 24.5 9.8 110 839-958 10-122 (133)
105 1dbw_A Transcriptional regulat 92.8 0.42 1.8E-05 24.5 10.9 106 839-955 11-117 (126)
106 3gk0_A PNP synthase, pyridoxin 92.7 0.43 1.8E-05 24.4 10.3 132 796-941 97-243 (278)
107 3grc_A Sensor protein, kinase; 92.6 0.44 1.8E-05 24.3 9.7 109 839-956 14-124 (140)
108 2rjn_A Response regulator rece 92.5 0.45 1.9E-05 24.2 10.0 106 839-955 15-122 (154)
109 1m5w_A Pyridoxal phosphate bio 92.5 0.45 1.9E-05 24.2 10.4 133 795-941 68-215 (243)
110 2qv6_A MJ0145, GTP cyclohydrol 92.4 0.47 2E-05 24.1 13.5 108 565-688 131-240 (268)
111 1mvo_A PHOP response regulator 92.2 0.49 2.1E-05 23.9 9.0 107 839-955 11-117 (136)
112 2pl1_A Transcriptional regulat 92.2 0.49 2.1E-05 23.9 12.2 107 839-956 8-115 (121)
113 1ybt_A Hydrolase, alpha/beta h 92.1 0.5 2.1E-05 23.9 9.1 93 564-663 16-109 (184)
114 3f6c_A Positive transcription 92.1 0.5 2.1E-05 23.9 7.9 108 839-956 8-117 (134)
115 2ayx_A Sensor kinase protein R 92.1 0.5 2.1E-05 23.8 11.2 107 839-956 137-244 (254)
116 2a9o_A Response regulator; ess 92.0 0.51 2.1E-05 23.8 12.4 106 839-956 9-115 (120)
117 3luf_A Two-component system re 92.0 0.51 2.1E-05 23.8 9.6 110 839-957 132-243 (259)
118 1x7f_A Outer surface protein; 92.0 0.13 5.5E-06 28.5 3.9 58 793-860 140-202 (385)
119 3hzh_A Chemotaxis response reg 91.7 0.54 2.3E-05 23.5 11.4 108 839-956 44-154 (157)
120 1yio_A Response regulatory pro 91.6 0.45 1.9E-05 24.2 6.2 10 565-574 48-57 (208)
121 2jba_A Phosphate regulon trans 91.3 0.57 2.4E-05 23.4 6.5 110 839-957 10-120 (127)
122 3eul_A Possible nitrate/nitrit 91.3 0.6 2.5E-05 23.2 10.3 118 825-955 13-131 (152)
123 3h1g_A Chemotaxis protein CHEY 91.3 0.6 2.5E-05 23.2 9.9 110 839-956 13-124 (129)
124 2r25_B Osmosensing histidine p 91.2 0.6 2.5E-05 23.2 11.0 112 839-959 10-127 (133)
125 3f6p_A Transcriptional regulat 91.2 0.61 2.6E-05 23.2 12.9 106 839-956 10-116 (120)
126 3c97_A Signal transduction his 90.9 0.61 2.6E-05 23.1 6.4 107 839-957 18-128 (140)
127 3kto_A Response regulator rece 90.9 0.65 2.7E-05 22.9 7.0 109 839-956 14-123 (136)
128 3hv2_A Response regulator/HD d 90.8 0.66 2.8E-05 22.9 11.2 107 839-956 22-130 (153)
129 2qsj_A DNA-binding response re 90.6 0.69 2.9E-05 22.7 7.6 109 839-956 10-121 (154)
130 3hdg_A Uncharacterized protein 90.6 0.69 2.9E-05 22.7 11.6 106 839-955 15-121 (137)
131 3eod_A Protein HNR; response r 90.4 0.71 3E-05 22.6 10.3 106 839-955 15-122 (130)
132 3igs_A N-acetylmannosamine-6-p 90.3 0.72 3E-05 22.6 7.3 99 848-954 122-224 (232)
133 3a10_A Response regulator; pho 90.2 0.73 3.1E-05 22.5 7.9 105 839-956 9-114 (116)
134 3cu5_A Two component transcrip 90.2 0.39 1.7E-05 24.7 4.8 108 840-955 10-119 (141)
135 2qr6_A IMP dehydrogenase/GMP r 89.3 0.85 3.6E-05 22.0 9.0 88 848-936 203-304 (393)
136 2qzj_A Two-component response 89.2 0.86 3.6E-05 21.9 11.8 105 839-955 12-117 (136)
137 1gvf_A Tagatose-bisphosphate a 89.0 0.88 3.7E-05 21.9 16.2 23 797-821 228-250 (286)
138 2vea_A Phytochrome-like protei 88.8 0.54 2.3E-05 23.6 4.7 88 417-510 31-119 (520)
139 2qr3_A Two-component system re 88.8 0.92 3.9E-05 21.7 9.1 111 839-957 11-124 (140)
140 2oog_A Glycerophosphoryl diest 88.6 0.94 4E-05 21.6 5.9 50 900-955 231-280 (287)
141 2zic_A Dextran glucosidase; TI 87.6 0.87 3.7E-05 21.9 5.1 15 822-836 524-539 (543)
142 2qv0_A Protein MRKE; structura 87.5 1.1 4.5E-05 21.1 7.8 107 840-956 18-124 (143)
143 3dzd_A Transcriptional regulat 87.2 1.1 4.7E-05 21.0 9.3 35 526-561 88-122 (368)
144 1uok_A Oligo-1,6-glucosidase; 87.0 1.1 4.8E-05 21.0 5.7 11 569-579 194-204 (558)
145 3cz5_A Two-component response 86.8 1.2 4.9E-05 20.9 10.8 110 839-957 12-123 (153)
146 2b4a_A BH3024; 10175646, struc 86.8 1.2 4.9E-05 20.9 6.2 110 839-961 23-133 (138)
147 2o9c_A Bacteriophytochrome; ph 86.6 1.2 5E-05 20.8 6.5 145 417-620 55-201 (342)
148 3ks6_A Glycerophosphoryl diest 85.8 1.3 5.5E-05 20.5 11.1 135 794-955 100-243 (250)
149 3aj7_A Oligo-1,6-glucosidase; 85.8 1.1 4.7E-05 21.0 4.9 14 590-603 253-266 (589)
150 2dh2_A 4F2 cell-surface antige 85.1 1.4 5.8E-05 20.3 11.2 13 590-602 152-164 (424)
151 1a53_A IGPS, indole-3-glycerol 85.0 1.4 5.9E-05 20.2 5.4 88 842-935 139-229 (247)
152 1d3c_A Cyclodextrin glycosyltr 85.0 0.38 1.6E-05 24.8 2.2 14 82-95 69-82 (686)
153 3n9r_A Fructose-bisphosphate a 84.7 1.4 6.1E-05 20.1 14.4 21 673-693 153-173 (307)
154 3jte_A Response regulator rece 84.6 1.5 6.1E-05 20.1 12.0 107 839-956 11-120 (143)
155 1zh2_A KDP operon transcriptio 84.6 1.5 6.2E-05 20.1 10.8 106 839-956 9-115 (121)
156 1vd6_A Glycerophosphoryl diest 84.4 1.5 6.3E-05 20.0 7.6 59 871-939 157-215 (224)
157 1vc4_A Indole-3-glycerol phosp 83.6 1.6 6.7E-05 19.8 5.2 90 844-942 143-237 (254)
158 1gjw_A Maltodextrin glycosyltr 83.3 1.6 6.9E-05 19.7 5.9 13 607-619 495-507 (637)
159 3edf_A FSPCMD, cyclomaltodextr 82.6 1.5 6.5E-05 19.9 4.5 12 608-619 446-457 (601)
160 3l12_A Putative glycerophospho 82.5 1.7 7.3E-05 19.5 7.5 51 900-956 258-308 (313)
161 1zja_A Trehalulose synthase; s 82.4 1.8 7.4E-05 19.4 6.6 11 570-580 196-206 (557)
162 1hvx_A Alpha-amylase; hydrolas 82.4 1.8 7.4E-05 19.4 4.7 14 85-98 112-125 (515)
163 1ht6_A AMY1, alpha-amylase iso 82.2 1.7 7.1E-05 19.6 4.6 21 462-483 69-89 (405)
164 3ch0_A Glycerophosphodiester p 81.9 1.6 6.9E-05 19.7 4.4 107 810-938 154-264 (272)
165 1kko_A 3-methylaspartate ammon 81.6 1.9 7.9E-05 19.2 11.4 129 814-948 257-393 (413)
166 3no3_A Glycerophosphodiester p 81.0 2 8.2E-05 19.1 15.1 137 794-956 98-236 (238)
167 3hdv_A Response regulator; PSI 80.8 2 8.3E-05 19.0 9.5 109 839-957 15-125 (136)
168 1rvg_A Fructose-1,6-bisphospha 80.8 2 8.3E-05 19.0 14.0 25 796-822 248-272 (305)
169 3ilh_A Two component response 80.8 2 8.3E-05 19.0 12.6 112 839-957 17-137 (146)
170 3mr7_A Adenylate/guanylate cyc 80.6 2 8.4E-05 19.0 7.9 115 565-680 7-123 (189)
171 3h5i_A Response regulator/sens 80.6 2 8.4E-05 19.0 7.8 107 839-956 13-121 (140)
172 2isw_A Putative fructose-1,6-b 80.5 2 8.5E-05 18.9 14.9 23 797-821 251-273 (323)
173 1cb0_A Protein (5'-deoxy-5'-me 80.4 2 8.5E-05 18.9 4.4 11 752-762 231-241 (283)
174 3o6c_A PNP synthase, pyridoxin 80.2 2.1 8.7E-05 18.9 6.3 104 824-929 86-225 (260)
175 1g5a_A Amylosucrase; glycosylt 79.7 2.1 9E-05 18.8 4.5 34 570-603 282-320 (628)
176 1xhf_A DYE resistance, aerobic 79.5 2.2 9.1E-05 18.7 13.1 106 839-956 11-117 (123)
177 1y10_A Hypothetical protein RV 78.7 2.3 9.6E-05 18.5 12.7 158 565-740 215-374 (407)
178 3bmv_A Cyclomaltodextrin gluca 78.6 0.94 3.9E-05 21.6 2.3 14 82-95 69-82 (683)
179 1ud2_A Amylase, alpha-amylase; 78.6 2.3 9.6E-05 18.5 4.3 10 87-96 111-120 (480)
180 1wc3_A Adenylate cyclase; solu 78.3 2.3 9.8E-05 18.4 9.6 59 565-623 27-86 (219)
181 1zgz_A Torcad operon transcrip 78.2 2.3 9.8E-05 18.4 12.5 106 839-956 10-116 (122)
182 3cg0_A Response regulator rece 77.7 2.4 0.0001 18.3 10.6 106 839-955 17-124 (140)
183 2rdm_A Response regulator rece 76.9 2.5 0.00011 18.2 9.3 106 839-956 13-120 (132)
184 1dc7_A NTRC, nitrogen regulati 75.5 0.3 1.3E-05 25.6 -1.0 109 839-957 11-119 (124)
185 3khj_A Inosine-5-monophosphate 75.4 2.8 0.00012 17.9 10.5 115 819-941 114-240 (361)
186 1yk9_A Adenylate cyclase; beta 75.0 0.69 2.9E-05 22.7 0.8 171 562-749 7-191 (204)
187 1bf2_A Isoamylase; hydrolase, 74.5 2.1 8.7E-05 18.9 3.1 12 792-803 679-690 (750)
188 1gcy_A Glucan 1,4-alpha-maltot 74.5 2.9 0.00012 17.7 5.3 14 767-780 454-467 (527)
189 2wsk_A Glycogen debranching en 74.2 2.9 0.00012 17.7 5.4 11 793-803 606-616 (657)
190 2pln_A HP1043, response regula 74.0 3 0.00012 17.6 13.0 102 839-955 26-129 (137)
191 1iv8_A Maltooligosyl trehalose 73.8 3 0.00013 17.6 4.2 19 769-787 630-648 (720)
192 3czg_A Sucrose hydrolase; (alp 73.5 3 0.00013 17.5 5.0 36 568-603 274-314 (644)
193 3lua_A Response regulator rece 72.9 3.1 0.00013 17.4 8.7 109 840-957 13-125 (140)
194 2otd_A Glycerophosphodiester p 72.3 3.2 0.00013 17.3 10.2 60 870-939 177-236 (247)
195 3m07_A Putative alpha amylase; 72.1 3.2 0.00014 17.3 7.1 12 608-619 450-461 (618)
196 3lab_A Putative KDPG (2-keto-3 72.1 3.3 0.00014 17.3 6.2 133 805-960 21-160 (217)
197 2vr5_A Glycogen operon protein 72.0 3.3 0.00014 17.3 5.5 13 791-803 656-668 (718)
198 1fx2_A Receptor-type adenylate 71.9 3.3 0.00014 17.3 8.9 65 558-623 5-70 (235)
199 3eqz_A Response regulator; str 71.3 3.4 0.00014 17.2 7.2 108 839-956 11-122 (135)
200 3kcn_A Adenylate cyclase homol 70.4 3.5 0.00015 17.0 8.9 103 842-955 14-119 (151)
201 3ivs_A Homocitrate synthase, m 70.2 3.5 0.00015 17.0 10.1 14 548-561 150-163 (423)
202 1xw8_A UPF0271 protein YBGL; N 69.7 3.6 0.00015 16.9 5.8 16 457-472 33-48 (252)
203 2dfa_A Hypothetical UPF0271 pr 69.6 3.6 0.00015 16.9 7.2 17 457-473 38-54 (250)
204 2o55_A Putative glycerophospho 69.4 3.7 0.00015 16.9 14.5 112 807-939 124-245 (258)
205 1qwg_A PSL synthase;, (2R)-pho 69.1 3.7 0.00016 16.8 7.8 45 677-723 87-131 (251)
206 3hje_A 704AA long hypothetical 68.7 3.8 0.00016 16.8 4.0 46 726-786 590-635 (704)
207 2p4s_A Purine nucleoside phosp 68.6 3.8 0.00016 16.7 4.9 27 591-617 94-120 (373)
208 3n0r_A Response regulator; sig 68.2 3.9 0.00016 16.7 6.4 106 839-956 168-274 (286)
209 1zco_A 2-dehydro-3-deoxyphosph 68.1 3.9 0.00016 16.7 7.2 57 796-855 195-259 (262)
210 3ctl_A D-allulose-6-phosphate 67.6 4 0.00017 16.6 11.1 140 813-961 72-221 (231)
211 1s8n_A Putative antiterminator 66.8 4.1 0.00017 16.5 10.2 17 667-683 115-131 (205)
212 1nvm_A HOA, 4-hydroxy-2-oxoval 66.6 4.1 0.00017 16.4 9.2 75 750-829 235-313 (345)
213 2wan_A Pullulanase; hydrolase, 65.9 4.2 0.00018 16.4 4.6 47 541-603 597-643 (921)
214 1i4n_A Indole-3-glycerol phosp 65.4 4.3 0.00018 16.3 5.2 92 841-942 136-231 (251)
215 1w0m_A TIM, triosephosphate is 65.1 4.4 0.00018 16.2 6.5 61 875-935 132-199 (226)
216 1yxy_A Putative N-acetylmannos 64.8 4.4 0.00019 16.2 5.2 42 902-943 178-221 (234)
217 1hg3_A Triosephosphate isomera 64.3 4.5 0.00019 16.1 6.7 36 899-934 163-201 (225)
218 1iuk_A Hypothetical protein TT 63.8 4.6 0.00019 16.1 6.8 102 843-958 28-139 (140)
219 1g94_A Alpha-amylase; beta-alp 62.3 4.9 0.00021 15.9 3.5 10 440-449 55-64 (448)
220 2x4b_A Limit dextrinase; starc 62.1 4.9 0.00021 15.8 4.7 17 89-105 138-154 (884)
221 3ffs_A Inosine-5-monophosphate 62.1 4.9 0.00021 15.8 6.7 119 816-942 150-280 (400)
222 2e8y_A AMYX protein, pullulana 61.9 5 0.00021 15.8 6.3 17 89-105 115-131 (718)
223 2whl_A Beta-mannanase, baman5; 61.4 5 0.00021 15.7 4.6 22 496-517 3-24 (294)
224 1bqc_A Protein (beta-mannanase 60.6 5.2 0.00022 15.7 4.1 22 496-517 5-26 (302)
225 1kcz_A Beta-methylaspartase; b 59.9 5.3 0.00022 15.6 11.8 139 810-955 254-400 (413)
226 1wa3_A 2-keto-3-deoxy-6-phosph 59.6 5.4 0.00023 15.5 11.6 34 902-936 96-129 (205)
227 1ny5_A Transcriptional regulat 59.0 5.5 0.00023 15.4 11.2 23 759-781 309-331 (387)
228 2w01_A Adenylate cyclase; guan 58.4 5.6 0.00024 15.4 10.2 59 565-623 14-73 (208)
229 1pii_A N-(5'phosphoribosyl)ant 58.0 5.7 0.00024 15.3 9.7 12 813-824 318-329 (452)
230 2xij_A Methylmalonyl-COA mutas 57.8 5.7 0.00024 15.3 11.7 104 845-956 622-732 (762)
231 3isy_A Bsupi, intracellular pr 57.6 5.8 0.00024 15.3 7.8 70 85-166 18-87 (120)
232 2bhu_A Maltooligosyltrehalose 56.6 6 0.00025 15.2 7.0 10 610-619 437-446 (602)
233 2vy9_A Anti-sigma-factor antag 56.4 6 0.00025 15.1 8.5 88 871-962 36-123 (123)
234 1u83_A Phosphosulfolactate syn 56.4 6 0.00025 15.1 9.1 25 677-701 112-136 (276)
235 3nvt_A 3-deoxy-D-arabino-heptu 55.2 6.3 0.00026 15.0 3.2 47 897-955 326-373 (385)
236 3oir_A Sulfate transporter sul 54.5 6.4 0.00027 14.9 6.5 111 819-956 16-128 (135)
237 2fpr_A Histidine biosynthesis 54.5 6.4 0.00027 14.9 3.0 12 683-694 148-159 (176)
238 1zcc_A Glycerophosphodiester p 53.4 6.6 0.00028 14.8 5.4 41 899-939 183-224 (248)
239 3k1d_A 1,4-alpha-glucan-branch 53.2 6.7 0.00028 14.8 4.7 11 153-163 182-192 (722)
240 2fhf_A Pullulanase; multiple d 53.0 6.7 0.00028 14.7 3.9 35 86-121 109-143 (1083)
241 3odg_A Xanthosine phosphorylas 51.5 7.1 0.0003 14.6 4.6 11 752-762 257-267 (287)
242 3oiz_A Antisigma-factor antago 51.4 6.4 0.00027 14.9 2.1 53 878-931 44-96 (99)
243 1yad_A Regulatory protein TENI 51.1 7.2 0.0003 14.5 7.0 88 867-954 120-210 (221)
244 1v6t_A Hypothetical UPF0271 pr 51.0 7.2 0.0003 14.5 7.0 18 457-474 38-55 (255)
245 1kmj_A Selenocysteine lyase; p 50.4 7.3 0.00031 14.4 2.4 59 847-910 347-406 (406)
246 3jr2_A Hexulose-6-phosphate sy 49.8 7.5 0.00031 14.4 5.7 115 840-958 94-218 (218)
247 1vhc_A Putative KHG/KDPG aldol 49.6 7.5 0.00032 14.3 7.6 130 806-959 26-157 (224)
248 1j5s_A Uronate isomerase; TM00 49.4 7.6 0.00032 14.3 3.1 44 808-856 356-399 (463)
249 3e9k_A Kynureninase; kynurenin 49.3 7.6 0.00032 14.3 2.4 11 847-857 414-424 (465)
250 1l6w_A Fructose-6-phosphate al 49.0 7.7 0.00032 14.3 12.5 128 795-935 55-184 (220)
251 3gqv_A Enoyl reductase; medium 48.9 7.7 0.00032 14.3 4.7 23 816-838 344-366 (371)
252 1z7e_A Protein aRNA; rossmann 48.1 5.7 0.00024 15.3 1.4 11 102-112 77-87 (660)
253 1xi3_A Thiamine phosphate pyro 47.1 8.2 0.00034 14.1 4.1 87 867-954 118-207 (215)
254 3kuu_A Phosphoribosylaminoimid 46.9 6.6 0.00028 14.8 1.5 117 794-922 13-132 (174)
255 3mgl_A Sulfate permease family 46.6 8.3 0.00035 14.0 7.8 90 822-935 16-105 (130)
256 3jug_A Beta-mannanase; TIM-bar 46.0 8.5 0.00036 13.9 4.8 22 496-517 26-47 (345)
257 1wx0_A Transaldolase; structur 45.9 8.5 0.00036 13.9 11.0 128 795-935 62-191 (223)
258 3ngj_A Deoxyribose-phosphate a 45.5 8.6 0.00036 13.9 6.2 112 793-935 111-226 (239)
259 1xx1_A Smase I, sphingomyelina 44.7 8.8 0.00037 13.8 3.2 47 903-955 217-263 (285)
260 1vpx_A Protein (transaldolase 43.8 9.1 0.00038 13.7 12.2 127 796-935 66-194 (230)
261 3eeg_A 2-isopropylmalate synth 43.0 9.3 0.00039 13.6 5.7 87 795-887 137-231 (325)
262 3mz2_A Glycerophosphoryl diest 42.1 9.6 0.0004 13.5 8.1 56 898-959 216-281 (292)
263 3hbl_A Pyruvate carboxylase; T 42.0 9.6 0.0004 13.5 6.5 17 756-772 841-857 (1150)
264 2x5e_A UPF0271 protein PA4511; 40.8 10 0.00042 13.4 8.9 18 457-474 44-61 (252)
265 1wky_A Endo-beta-1,4-mannanase 40.2 10 0.00043 13.3 5.0 22 496-517 11-32 (464)
266 1h1y_A D-ribulose-5-phosphate 40.0 10 0.00043 13.3 9.7 112 843-957 101-221 (228)
267 2h6r_A Triosephosphate isomera 39.8 10 0.00043 13.3 4.6 18 870-887 185-202 (219)
268 3fbg_A Putative arginate lyase 39.7 10 0.00043 13.2 5.6 13 824-836 329-341 (346)
269 1u11_A PURE (N5-carboxyaminoim 39.7 10 0.00044 13.2 2.0 119 796-926 24-145 (182)
270 3khs_A Purine nucleoside phosp 39.5 10 0.00044 13.2 4.4 21 595-615 10-30 (285)
271 1o4v_A Phosphoribosylaminoimid 39.4 10 0.00044 13.2 2.2 108 796-915 16-126 (183)
272 1m3s_A Hypothetical protein YC 38.4 11 0.00045 13.1 5.4 10 682-691 100-109 (186)
273 1i60_A IOLI protein; beta barr 38.4 11 0.00045 13.1 6.5 23 839-861 152-174 (278)
274 3faw_A Reticulocyte binding pr 36.9 11 0.00048 12.9 5.3 18 89-106 146-163 (877)
275 2wz1_A Guanylate cyclase solub 36.5 11 0.00048 12.9 9.4 98 565-663 12-123 (219)
276 1mxs_A KDPG aldolase; 2-keto-3 36.1 12 0.00049 12.8 5.0 131 805-959 34-166 (225)
277 1j6u_A UDP-N-acetylmuramate-al 36.0 12 0.00049 12.8 7.0 113 812-927 297-426 (469)
278 2qde_A Mandelate racemase/muco 35.3 12 0.0005 12.7 7.5 112 790-920 188-302 (397)
279 1xax_A Hypothetical UPF0054 pr 35.0 12 0.00051 12.7 2.2 58 536-611 13-70 (154)
280 1id1_A Putative potassium chan 34.7 12 0.00051 12.7 9.5 111 806-935 10-122 (153)
281 3lzq_A P19 protein; copper bin 34.5 7.5 0.00032 14.4 0.2 30 71-101 47-80 (159)
282 1qyi_A ZR25, hypothetical prot 34.5 12 0.00052 12.6 8.6 100 836-935 212-362 (384)
283 1ji1_A Alpha-amylase I; beta/a 33.1 13 0.00054 12.5 5.7 13 590-602 375-387 (637)
284 1ub3_A Aldolase protein; schif 32.8 13 0.00055 12.4 7.6 114 793-935 87-202 (220)
285 1wbh_A KHG/KDPG aldolase; lyas 32.7 13 0.00055 12.4 7.4 132 805-960 24-157 (214)
286 3i4k_A Muconate lactonizing en 32.6 13 0.00055 12.4 10.1 102 807-922 206-309 (383)
287 3cai_A Possible aminotransfera 32.5 13 0.00055 12.4 1.6 14 842-855 393-406 (406)
288 3iru_A Phoshonoacetaldehyde hy 32.5 13 0.00055 12.4 2.5 13 848-860 120-132 (277)
289 1ydn_A Hydroxymethylglutaryl-C 32.4 13 0.00055 12.4 5.5 37 750-786 246-282 (295)
290 2nx9_A Oxaloacetate decarboxyl 32.4 13 0.00055 12.4 8.4 38 749-793 302-339 (464)
291 3cqj_A L-ribulose-5-phosphate 32.3 13 0.00056 12.4 4.2 16 816-832 248-263 (295)
292 1m32_A 2-aminoethylphosphonate 31.8 11 0.00046 13.0 0.7 16 845-860 314-329 (366)
293 2fli_A Ribulose-phosphate 3-ep 31.5 14 0.00057 12.3 11.3 147 794-955 62-216 (220)
294 1rpx_A Protein (ribulose-phosp 31.2 14 0.00058 12.3 9.7 138 809-955 79-225 (230)
295 3gem_A Short chain dehydrogena 31.0 14 0.00058 12.2 5.3 19 622-640 78-96 (260)
296 2yw3_A 4-hydroxy-2-oxoglutarat 31.0 14 0.00058 12.2 7.2 129 807-959 23-151 (207)
297 3m5v_A DHDPS, dihydrodipicolin 30.7 14 0.00059 12.2 9.4 26 668-697 87-112 (301)
298 1b9b_A TIM, protein (triosepho 30.3 14 0.0006 12.1 8.6 14 720-733 163-176 (255)
299 1p3d_A UDP-N-acetylmuramate--a 30.0 14 0.0006 12.1 5.0 41 814-854 313-363 (475)
300 1vs1_A 3-deoxy-7-phosphoheptul 29.9 14 0.0006 12.1 4.9 48 896-955 221-269 (276)
301 2a8y_A 5'-methylthioadenosine 29.4 15 0.00062 12.0 4.0 13 752-764 223-235 (270)
302 1q6o_A Humps, 3-keto-L-gulonat 29.2 15 0.00062 12.0 9.4 36 907-942 160-196 (216)
303 1q7e_A Hypothetical protein YF 29.2 15 0.00062 12.0 2.3 41 813-864 325-365 (428)
304 3l9w_A Glutathione-regulated p 29.0 15 0.00062 12.0 8.6 32 825-857 293-324 (413)
305 3inp_A D-ribulose-phosphate 3- 28.9 15 0.00063 12.0 9.0 124 825-956 110-242 (246)
306 2o6f_A 34 kDa membrane antigen 28.5 10 0.00043 13.3 0.1 30 71-100 79-112 (189)
307 3b9e_A Chitinase A; TIM-barrel 28.4 15 0.00064 11.9 4.1 43 668-717 526-568 (584)
308 1me8_A Inosine-5'-monophosphat 28.4 15 0.00064 11.9 7.9 26 910-935 352-378 (503)
309 3klo_A Transcriptional regulat 28.4 15 0.00064 11.9 6.9 10 565-574 54-63 (225)
310 1vr6_A Phospho-2-dehydro-3-deo 27.4 16 0.00066 11.8 6.9 56 795-853 277-340 (350)
311 2p3z_A L-rhamnonate dehydratas 26.6 16 0.00068 11.7 8.6 14 108-121 8-21 (415)
312 1ypf_A GMP reductase; GUAC, pu 26.5 16 0.00068 11.7 9.1 135 795-942 98-244 (336)
313 1yx1_A Hypothetical protein PA 26.2 16 0.00069 11.6 7.3 72 807-881 110-186 (264)
314 2hxt_A L-fuconate dehydratase; 25.8 17 0.0007 11.6 5.6 16 762-777 406-421 (441)
315 1iwp_B Glycerol dehydratase be 25.5 17 0.00071 11.5 3.1 18 535-552 43-60 (194)
316 3civ_A Endo-beta-1,4-mannanase 25.4 17 0.00071 11.5 4.7 14 679-692 57-70 (343)
317 1ll7_A Chitinase 1; beta-alpha 25.2 17 0.00072 11.5 3.5 28 838-865 319-352 (392)
318 1uls_A Putative 3-oxoacyl-acyl 25.2 17 0.00072 11.5 4.6 23 840-862 208-236 (245)
319 3c85_A Putative glutathione-re 25.0 17 0.00073 11.4 5.3 133 805-958 45-180 (183)
320 3ff4_A Uncharacterized protein 24.6 17 0.00074 11.4 3.4 40 898-937 70-111 (122)
321 2v82_A 2-dehydro-3-deoxy-6-pho 24.4 18 0.00074 11.4 5.4 26 910-935 148-173 (212)
322 2k9p_A Pheromone alpha factor 24.3 18 0.00074 11.4 6.7 35 186-220 15-50 (80)
323 1ydy_A Glycerophosphoryl diest 24.2 12 0.0005 12.7 -0.2 61 878-938 274-346 (356)
324 2dr1_A PH1308 protein, 386AA l 23.6 18 0.00076 11.3 0.9 51 845-908 327-378 (386)
325 1mzh_A Deoxyribose-phosphate a 23.6 18 0.00077 11.3 6.6 114 793-935 86-201 (225)
326 3bsm_A Mandelate racemase/muco 23.3 18 0.00078 11.2 5.4 57 853-914 256-313 (413)
327 3oa3_A Aldolase; structural ge 23.2 18 0.00078 11.2 6.5 113 794-935 143-260 (288)
328 1ccw_A Protein (glutamate muta 22.9 19 0.00079 11.2 12.7 122 826-958 4-135 (137)
329 3krt_A Crotonyl COA reductase; 22.8 19 0.00079 11.2 5.4 13 102-114 72-84 (456)
330 2b7n_A Probable nicotinate-nuc 22.6 19 0.0008 11.1 4.2 34 907-940 226-260 (273)
331 2fi1_A Hydrolase, haloacid deh 22.5 19 0.0008 11.1 4.8 18 844-861 87-104 (190)
332 1itx_A Chitinase A1, glycosyl 22.4 19 0.0008 11.1 3.2 14 477-490 39-52 (419)
333 3kts_A Glycerol uptake operon 22.4 19 0.0008 11.1 5.6 56 870-935 120-176 (192)
334 2htm_A Thiazole biosynthesis p 22.4 19 0.0008 11.1 6.1 19 917-935 186-204 (268)
335 1nqj_A Class 1 collagenase; be 22.3 19 0.00081 11.1 6.4 69 84-167 38-106 (119)
336 3g8r_A Probable spore coat pol 22.3 19 0.00081 11.1 11.6 65 846-910 183-260 (350)
337 1h1n_A Endo type cellulase ENG 22.0 19 0.00082 11.0 6.9 10 550-559 73-82 (305)
338 1vky_A S-adenosylmethionine:tR 21.9 20 0.00082 11.0 2.6 48 652-699 207-264 (347)
339 1kmo_A FECA, iron(III) dicitra 21.8 16 0.00066 11.8 0.0 26 6-31 3-28 (774)
340 3icg_A Endoglucanase D; cellul 21.8 20 0.00082 11.0 5.3 21 843-863 290-311 (515)
341 2hsz_A Novel predicted phospha 21.8 20 0.00083 11.0 7.3 15 846-860 121-135 (243)
342 3lr0_A Sensor protein; niaid, 21.7 20 0.00083 11.0 2.8 12 611-622 123-134 (143)
343 3bbo_K Ribosomal protein L11; 21.5 20 0.00083 11.0 1.7 27 896-924 193-219 (224)
344 1lss_A TRK system potassium up 21.5 20 0.00084 11.0 3.9 108 806-935 11-119 (140)
345 1o1z_A GDPD, glycerophosphodie 21.5 20 0.00084 11.0 7.9 61 871-938 165-225 (234)
346 1sjd_A N-acylamino acid racema 21.2 20 0.00084 10.9 5.7 81 836-924 217-299 (368)
347 1wdi_A Hypothetical protein TT 21.2 20 0.00085 10.9 2.9 20 677-696 239-258 (345)
348 1eex_B Propanediol dehydratase 21.2 20 0.00085 10.9 3.3 20 534-553 75-94 (224)
349 3m47_A Orotidine 5'-phosphate 20.9 20 0.00085 10.9 5.7 25 878-902 196-222 (228)
350 2ebn_A Endo-beta-N-acetylgluco 20.9 20 0.00086 10.9 7.5 11 706-716 154-164 (289)
351 3llo_A Prestin; STAS domain, c 20.9 20 0.00086 10.9 6.9 109 824-954 28-139 (143)
352 1t3i_A Probable cysteine desul 20.8 20 0.00086 10.9 2.4 59 846-908 354-415 (420)
353 2ftp_A Hydroxymethylglutaryl-C 20.8 20 0.00086 10.9 6.4 34 750-783 250-283 (302)
354 1pxy_A Fimbrin-like protein; c 20.7 5.2 0.00022 15.6 -2.6 115 798-915 354-479 (506)
355 3iix_A Biotin synthetase, puta 20.6 21 0.00087 10.8 12.8 22 843-865 319-340 (348)
356 3kyj_B CHEY6 protein, putative 20.4 21 0.00087 10.8 5.8 86 849-945 31-121 (145)
357 2eih_A Alcohol dehydrogenase; 20.1 21 0.00089 10.7 5.4 18 808-825 294-311 (343)
No 1
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=100.00 E-value=0 Score=652.39 Aligned_cols=423 Identities=19% Similarity=0.260 Sum_probs=382.9
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 31232166306775324066999999999999875533898489999976785798884277889999999999999834
Q gi|254780468|r 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 (963)
Q Consensus 524 ~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~ 603 (963)
..|++|+++|++||+||||||++|.++++..++++.... .+.+|++|||++|+.||+.|||+.||++|+++|++|++.+
T Consensus 4 ~~Ee~L~~~a~~D~lTgL~Nr~~f~~~l~~~l~~~~~~~-~~~~l~~i~i~~~~~in~~~G~~~gD~lL~~ia~~L~~~l 82 (437)
T 3hvb_A 4 GSEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTAR-KPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQF 82 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 899999999554744475209999999999999887449-9789999989877799987390999999999999999866
Q ss_pred CCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89976999806410202556699899999876555431011552546799999987764589889989999999999999
Q gi|254780468|r 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 (963)
Q Consensus 604 ~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~ 683 (963)
++++.+||++|++|++++++.+..+....+.+.+......++...+..+.+++++|++.++.+.....+++..|+.|++.
T Consensus 83 ~~~~~laRl~~~~F~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~sigi~~~~~~~~~~~~~~~~a~~a~~~ 162 (437)
T 3hvb_A 83 GEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLFELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADD 162 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99877999757320321588987887765546899997555103771588864124002574223189999999999998
Q ss_pred HHHHCCCCEEECCCC---CCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 987089740520111---11068999999987436410035541146882214421000000003577553023035788
Q gi|254780468|r 684 AKHRGGNHVESFRVS---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 (963)
Q Consensus 684 Ak~~g~~~~~~~~~~---~~~~~~~~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ 760 (963)
+|..+.+....+... .....+..|...|++|+++++|.++||||++++++++.|+|+++||.+++++.++|++|+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~l~~QPiv~~~~~~i~~~E~l~R~~~~~~~~~~~~~f~~~ 242 (437)
T 3hvb_A 163 AARKGGSQIKQYNPAEELAAAAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHA 242 (437)
T ss_dssp --------------------CCCCCCHHHHHHTTTTTTCCEEEEEEEEESSSCSSEEEEEEEEEECTTSSEECHHHHHHH
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHH
T ss_conf 87626676544221025699999999999999989739289999416853777621465766566588897782023446
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCC
Q ss_conf 89779967998999999999999988715899849999769779439148999999998819995469999713377509
Q gi|254780468|r 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 (963)
Q Consensus 761 ae~~gl~~~ld~~vl~~a~~~l~~~~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~ 840 (963)
||+.|++.++|+|+++++|+.+++|.... ....++||+|+.+|.+++|.+|+.+.+++++++|++|+||++|+....+
T Consensus 243 ~~~~~l~~~ld~~~l~~~~~~l~~~~~~~--~~~~l~inls~~~l~~~~~~~~l~~~l~~~~~~~~~l~~Ei~e~~~~~~ 320 (437)
T 3hvb_A 243 AKEAGLAEKIDRWVILNSIKLLAEHRAKG--HQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSY 320 (437)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEECCHHHHHCTTHHHHHHHHHHTTTCCTTCEEEEEEHHHHHHT
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCC
T ss_conf 88668753232789999999999998628--8726998520543047055678999987504753103455324443100
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCH-HHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99899999999988989999188776454888972799899971688539994-57999999999999779809997039
Q gi|254780468|r 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIY 919 (963)
Q Consensus 841 ~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~-~~~~~v~sii~~a~~lgi~viAegVE 919 (963)
.+.+.++++.+|++||+++|||||+||+|+++|.++|+|+||||++|+++++. .++.++++++.+||++|++|||||||
T Consensus 321 ~~~~~~~~~~l~~~G~~iaiddfG~~~~s~~~L~~l~~d~iKid~~~i~~i~~~~~~~~l~~~i~~a~~~~~~viaegVe 400 (437)
T 3hvb_A 321 LKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVE 400 (437)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETCSSSHHHHHTTSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 24322455566416877998679988412899983899999989899950288737899999999999859958995789
Q ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCHHHH
Q ss_conf 989999899809989940520689998999
Q gi|254780468|r 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 (963)
Q Consensus 920 ~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~ 949 (963)
|+++++.|+++||||+|||||+||+|.+++
T Consensus 401 ~~~~~~~l~~~gid~~QG~~~~~P~~~~~f 430 (437)
T 3hvb_A 401 SASVLATLWQAGATYIQGYYLQGPSQAMDY 430 (437)
T ss_dssp SHHHHHHHHHHTCSEEECTTTCCCBSSCCC
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCHHHC
T ss_conf 399999999769999987800436986767
No 2
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A
Probab=100.00 E-value=0 Score=404.05 Aligned_cols=245 Identities=17% Similarity=0.262 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999874364100355411468822144210000000035775530230357888977996799899999999999
Q gi|254780468|r 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 (963)
Q Consensus 703 ~~~~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l 782 (963)
++..+...|++||++++|.++||||++++++++.|||+++||++++++.++|++|++++|+.|++.++|+|+++++|..+
T Consensus 16 ~~~~~~~~l~~Al~~~~f~l~yQPIv~~~~~~i~g~E~l~R~~~~~~~~~~~~~f~~~~~~~~l~~~ld~~~l~~~~~~l 95 (268)
T 3hv8_A 16 QRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLL 95 (268)
T ss_dssp --CCHHHHHHHHHHHTCEEEEEEEEEESSCCCCEEEEEEEEEECTTSCEECGGGTHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999998598899986769979998999999994577998989999999999984985788899999899999
Q ss_pred HHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99887158998499997697794391489999999988199954699997133775099989999999998898999918
Q gi|254780468|r 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 (963)
Q Consensus 783 ~~~~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDd 862 (963)
+.|.... .+..++||+|+.++.+++|.+|+...++++++++.+++||++|+....+.+....++++||+.||+++|||
T Consensus 96 ~~~~~~~--~~~~l~inls~~~l~~~~~~~~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~L~~~G~~ialdd 173 (268)
T 3hv8_A 96 AEHRAKG--HQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQ 173 (268)
T ss_dssp HCC-------CEEEEEECCHHHHTCTTHHHHHHHHHHHHTCCSSCEEEEEEHHHHHHTHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHCC--CCCEEEEECCHHHHCCHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9987428--88547875587764070667999999997089940202442000211018999998877630786266504
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEHHHHCCCCH-HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCC
Q ss_conf 8776454888972799899971688539994-579999999999997798099970399899998998099899405206
Q gi|254780468|r 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 (963)
Q Consensus 863 FG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~-~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~ 941 (963)
||+|++++++|..+|+|+||||++|+++++. .++.++++++.+||++|++||||||||+++++.++++||||+|||||+
T Consensus 174 fg~~~~~l~~L~~l~~d~VKid~~~~~~i~~~~~~~~l~~li~~~~~~~~~vIaegVE~~~~~~~l~~lGv~~~QG~~~~ 253 (268)
T 3hv8_A 174 FGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQ 253 (268)
T ss_dssp ETCSSSTTGGGGTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHTCSEECSTTTC
T ss_pred CCCCCCCHHHHHEEEEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 89986432331125505787848998516643366899999999998499789994794999999997699998878125
Q ss_pred CCCCHHHH
Q ss_conf 89998999
Q gi|254780468|r 942 SPLGFNSI 949 (963)
Q Consensus 942 ~P~~~~~~ 949 (963)
+|+|+.++
T Consensus 254 ~P~~~~~f 261 (268)
T 3hv8_A 254 GPSQAMDY 261 (268)
T ss_dssp CCBSSCCC
T ss_pred CCCCHHHC
T ss_conf 47985667
No 3
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (ggdef & EAL domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans atcc 25259} PDB: 3ii8_A* 3n3t_A*
Probab=100.00 E-value=0 Score=396.53 Aligned_cols=259 Identities=27% Similarity=0.489 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 68999999987436410035541146882214421000000003577553023035788897799679989999999999
Q gi|254780468|r 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 (963)
Q Consensus 702 ~~~~~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~ 781 (963)
.++..++.+|++||++++|.++||||++++++++.|||+++||.+++++.++|++|++++++.++...+|.|+++++++.
T Consensus 22 ~~~~~le~~Lr~Al~~~~f~l~yQPIv~l~~~~i~g~E~l~R~~~~~~~~~~~~~f~~~a~~~~~~~~l~~~~l~~a~~~ 101 (294)
T 2r6o_A 22 HERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLVMPSAFIPAAEDTGLIVALSDWVLEACCTQ 101 (294)
T ss_dssp --CCCHHHHHHHHHHTTCEEEEEEEEEETTTCCEEEEEEEEEEEETTTEEECGGGTHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCEEEEEEEEEEECCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999859889997241899999999999898457688884188999999997496223468999999999
Q ss_pred HHHHHHHCC-CCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 999887158-9984999976977943914899999999881999546999971337750999899999999988989999
Q gi|254780468|r 782 IISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 (963)
Q Consensus 782 l~~~~~~~~-~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ial 860 (963)
+..|..... ...+.+++|+++.++.+.+|.+++...+++.++++.++++|+.|+....+.......++.|++.||+++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~l~~e~~e~~~~~~~~~~~~~i~~L~~~G~~ial 181 (294)
T 2r6o_A 102 LRAWQQQGRAADDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVMLVMTDEVRTCLDALRARGVRLAL 181 (294)
T ss_dssp HHHHHHTTCSCTTCCEEEEECGGGGGGGHHHHHHHHHHHHHCCCGGGEEEEEEGGGGGGCCHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHCCCCCCCCEECCCCHHHHCCHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999705777664300146677640126899999999971788021566652130014589999999999970987998
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCC--HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECC
Q ss_conf 18877645488897279989997168853999--4579999999999997798099970399899998998099899405
Q gi|254780468|r 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 (963)
Q Consensus 861 DdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~--~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~ 938 (963)
||||+|++++.+|..+++|+||||++++++.. +.++.++++++++||++|++||||||||+++++.++++||||+|||
T Consensus 182 Ddfg~~~~~~~~l~~l~~d~VKid~~~i~~~~~~~~~~~~l~~ii~~a~~~~~~vIaeGVEt~~~l~~l~~lGid~~QG~ 261 (294)
T 2r6o_A 182 DDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEVVAEGIETAQQYAFLRDRGCEFGQGN 261 (294)
T ss_dssp EEETSSCBCHHHHHHSCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHTTCCEECST
T ss_pred ECCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECC
T ss_conf 47999712389986436432056599996223575679999999999998699899984882999999998699999869
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2068999899999998516110
Q gi|254780468|r 939 HVASPLGFNSILKLLKERFPLV 960 (963)
Q Consensus 939 ~~~~P~~~~~~~~~l~~~~~~~ 960 (963)
||+||+|.+++..+++++.+-.
T Consensus 262 ~~~~P~~~~~~~~~l~~~~~~~ 283 (294)
T 2r6o_A 262 LMSTPQAADAFASLLDRQKASG 283 (294)
T ss_dssp TTCCCEEHHHHHHHHHHHHC--
T ss_pred CCCCCCCHHHHHHHHHHCCCCC
T ss_conf 0134699999999998562378
No 4
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling protein; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*
Probab=100.00 E-value=0 Score=400.96 Aligned_cols=260 Identities=17% Similarity=0.139 Sum_probs=231.1
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCHH--HHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCC
Q ss_conf 99999998708974052011111068--9999999874364100355411468822144210000000035775530230
Q gi|254780468|r 678 ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 (963)
Q Consensus 678 d~Al~~Ak~~g~~~~~~~~~~~~~~~--~~~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~ 755 (963)
..++++++..|+++...+.+...... ....+.++++|++++++.++||||+++.++++.|||+|+||.+ ++ .+|.
T Consensus 133 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~fQPIvdl~~~~v~g~EaL~R~~~--~~-~p~~ 209 (413)
T 3gfz_A 133 MFRLLSAFIADGGRYCLPEPLQPSRWMMMPASGTAAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRSPT--GG-SPVE 209 (413)
T ss_dssp HHHHHHHHHHHGGGGCCCGGGCGGGEEEEEC--CCCCCCCTTCSCEEEEEEEEETTTTEEEEEEEEEECTT--SC-CHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCEEEEECCEEECCCCCEEEEEEEEECCC--CC-CCHH
T ss_conf 99999998706565014787735667645465556997640797799961629989999999999953798--99-6979
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHH-CCCHHHHHHHHHHHHCCCCHHHEEEEEEH
Q ss_conf 35788897799679989999999999999887158998499997697794-39148999999998819995469999713
Q gi|254780468|r 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSE 834 (963)
Q Consensus 756 ~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~~~~~~~~~~~vsINlS~~~l-~~~~f~~~l~~~l~~~~~~~~~l~lEitE 834 (963)
.|++++|+.+++.+++.|++..++..... .....++||+|+.++ .+++|++++.+.+++++++|++|+|||||
T Consensus 210 ~F~~~ae~~~~~~~l~~~~~~~a~~~~~~------~~~~~lsvNlsp~~L~~~~~~~~~l~~~l~~~~l~p~~LvlEItE 283 (413)
T 3gfz_A 210 MFAAIAAEDRYRFDLESKAYAFALAGQLP------LGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTE 283 (413)
T ss_dssp HHHTSCGGGHHHHHHHTHHHHHHHHHTTT------CTTCEEEEECCHHHHHSSTTHHHHHHHHHHHTTCCGGGEEEEEEH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCC------CCCCEEEEEECHHHHCCCHHHHHHHHHHHHHCCCCHHHEEEEECC
T ss_conf 98999998598099999999999998616------899559999088997518149999999999819497896898205
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCC--HHHHHHHHHHHHHHHHCCCE
Q ss_conf 3775099989999999998898999918877645488897279989997168853999--45799999999999977980
Q gi|254780468|r 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 (963)
Q Consensus 835 ~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~--~~~~~~v~sii~~a~~lgi~ 912 (963)
+..+.+.+.+...++.||++||+++|||||+||+|+++|..+|+|+||||++|++++. +.++.++++++.+||++|++
T Consensus 284 ~~~~~~~~~~~~~l~~Lr~~G~~ialDDFG~g~ssl~~L~~l~~d~IKID~~~v~~i~~~~~~~~~v~~iv~la~~lgi~ 363 (413)
T 3gfz_A 284 TEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGIT 363 (413)
T ss_dssp HHHHTCSTTHHHHHHHHHHHTCEEEEEEETSSSCSHHHHTTCCCSEEEECHHHHTTTTTBHHHHHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 50436578898887755315874354477887035899985799989987899732035955799999999999984998
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCH
Q ss_conf 9997039989999899809989940520689998
Q gi|254780468|r 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 (963)
Q Consensus 913 viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~ 946 (963)
||||||||+++++.++++||||+|||||+||++.
T Consensus 364 vIAEGVEt~~~~~~l~~lGvd~~QGy~f~kP~~~ 397 (413)
T 3gfz_A 364 VVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLN 397 (413)
T ss_dssp EEEECCCSHHHHHHHHHTTCCEEESTTTCCCEET
T ss_pred EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 9998189299999999769999522702522999
No 5
>3pfm_A Ggdef domain protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics, EAL domain; 2.91A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.4e-45 Score=382.74 Aligned_cols=237 Identities=20% Similarity=0.316 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC-CCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 6899999998743641003554114688221-442100000000357755302303578889779967998999999999
Q gi|254780468|r 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 (963)
Q Consensus 702 ~~~~~~~~~l~~al~~~~~~l~~QPi~~~~~-~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~ 780 (963)
.+...|++.|++|+++++|.++||||+++++ +.+.|+|+++||+|++++.++|++|+|+||+.|++.++|+|+++++++
T Consensus 3 ~~~~~w~~~l~~Al~~~~~~l~yQPi~~~~~~~~v~~~E~l~R~~~~~~~~l~~~~f~~~ae~~~l~~~l~~~~l~~~~~ 82 (243)
T 3pfm_A 3 ADHHAWHRLLDRALSEQHFQLYFQPVVAARDTHLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTSRLDLLMLEQVLR 82 (243)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEEESSCTTSEEEEEEEEEEECTTSCEECHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 61899999999999869889999654985999999999999977878988648999999998769388999999877899
Q ss_pred HHHHHHHHCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 99998871589984999976977943914899999999881999546999971337750999899999999988989999
Q gi|254780468|r 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 (963)
Q Consensus 781 ~l~~~~~~~~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ial 860 (963)
++..|+ ..++||+|+.++.+++|.+++...+++++.++.++++|++|.... +.....++++++|++||+++|
T Consensus 83 ~l~~~~-------~~l~inls~~~l~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~-~~~~~~~~l~~l~~~G~~i~i 154 (243)
T 3pfm_A 83 QMASHE-------DCLALNLSAATLADPHALNRVFEILRQHSDLGPRLTLEIGEEQLP-EQAMLEQLTRRLRELGFSLSL 154 (243)
T ss_dssp HGGGCC-------CCEEEEECHHHHHCHHHHHHHHHHHHHTGGGTTTEEEEEESSSCC-CHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHC-------CEEECCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 876305-------233202688897591344689999987048777642666655541-016789999999972896687
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCC--HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECC
Q ss_conf 18877645488897279989997168853999--4579999999999997798099970399899998998099899405
Q gi|254780468|r 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 (963)
Q Consensus 861 DdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~--~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~ 938 (963)
||||+|+++++++..+|+|+||||++++++++ ++++.++++++++||.+|++||||||||+++++.++++||||+|||
T Consensus 155 dd~g~~~~~~~~l~~l~~~~vKld~~~~~~~~~~~~~~~~v~~i~~~a~~~~i~via~gVe~~~~~~~l~~~gi~~~QG~ 234 (243)
T 3pfm_A 155 QRFGGRFSMIGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELQVIREMGLYGVQGQ 234 (243)
T ss_dssp EEETTTGGGGGGHHHHTCSEEEECGGGGTTTTTCTHHHHHHHHHHHHHHHTTCCEEECCCCSHHHHHHHHHHTCSEECSG
T ss_pred ECCCCCCCCHHHHHCCCHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECC
T ss_conf 12699854355542244013104399984533125678999999999998599899981884999999998599998878
Q ss_pred CCCCCCCH
Q ss_conf 20689998
Q gi|254780468|r 939 HVASPLGF 946 (963)
Q Consensus 939 ~~~~P~~~ 946 (963)
||+||+|+
T Consensus 235 ~~s~P~P~ 242 (243)
T 3pfm_A 235 LFGEPAPW 242 (243)
T ss_dssp GGCCCCSC
T ss_pred EEEECCCC
T ss_conf 11237899
No 6
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=100.00 E-value=6.4e-44 Score=369.41 Aligned_cols=236 Identities=17% Similarity=0.187 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999874364100355411468822144210000000035775530230357888977996799899999999999998
Q gi|254780468|r 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 (963)
Q Consensus 706 ~~~~~l~~al~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~ 785 (963)
.+.+.|...++.+++.++||||++++++++.|||+|+||.+++++..+|..|++.+++.++..++|+|+++++++.+.++
T Consensus 24 ~~~d~l~~~~~~d~ivp~fQPIvsl~~~~vvGyEaL~R~~~~~~~~~~~~~fl~~~~~~~~~~~ld~~vl~~al~~~~~~ 103 (431)
T 2bas_A 24 AMLDPLDILTNIDDVLPYYQAIFSAEEQKVVGYEVLGRILADSEIQSLGPFFLDAGIPEEYKLEVDNRIIRQALDRFLEA 103 (431)
T ss_dssp --CCHHHHHHTTTTEEEEEEEEEESSSSSEEEEEEEEEEEETTEEEESHHHHSCSSSCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCEEEEEECCEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999998744893999977038999999999998986567998876958889999883979999999999999999855
Q ss_pred HHHCCCCCEEEEEECCHHHHCCC--HHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 87158998499997697794391--4899999999881999546999971337750999899999999988989999188
Q gi|254780468|r 786 RDQANMPPIFILINIASKDLLDN--ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 (963)
Q Consensus 786 ~~~~~~~~~~vsINlS~~~l~~~--~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdF 863 (963)
..+.+++||+|+..+... +....+.+.+++.+++|++++|||+|+....+.+.+.++++.+|+.||+||||||
T Consensus 104 -----~~~~~L~iNis~~~l~~~~~~~~~~ll~~l~~~gl~~~rIvlEI~E~~~~~d~~~l~~~l~~lr~~G~~IALDDf 178 (431)
T 2bas_A 104 -----DSDLLIFMNQDANLLMLDHGESFLELLKEYEAKGIELHRFVLEITEHNFEGDIEQLYHMLAYYRTYGIKIAVDNI 178 (431)
T ss_dssp -----CTTCEEEEECCHHHHGGGTTHHHHHHHHHHHHTTCCGGGEEEEECCTTCCSCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred -----CCCCEEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCHHHEEEEEECHHHHCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf -----999659999689997322458999999889886979789689801213321699999999886457858999899
Q ss_pred CCCHHHHHHHHHCCCCEEEEEHHHHCCC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCC
Q ss_conf 7764548889727998999716885399--94579999999999997798099970399899998998099899405206
Q gi|254780468|r 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 (963)
Q Consensus 864 G~g~ssl~~L~~l~~d~iKiD~sfv~~~--~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~ 941 (963)
|+|+||+.++..++||+||||+++++++ ++..+.++++++.+||++|+.||||||||++++..++++||||+|||||+
T Consensus 179 G~g~s~l~~l~~l~pD~IKlD~sli~~~~~~~~~~~il~~Lv~la~~~g~~vIaEGVEt~~ql~~l~~lGvd~~QG~yf~ 258 (431)
T 2bas_A 179 GKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGAALLYEDIEANFQLQYAWRNGGRYFQGYYLV 258 (431)
T ss_dssp TTTBCCHHHHHHHCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHHTCEEEEECCCSHHHHHHHHHTTEEEECSTTTC
T ss_pred CCCCCHHHHHHHCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 99841399998589999999989985240496689999999999998699899981895999999997599896458412
Q ss_pred CCCCH
Q ss_conf 89998
Q gi|254780468|r 942 SPLGF 946 (963)
Q Consensus 942 ~P~~~ 946 (963)
+|.|.
T Consensus 259 ~P~~~ 263 (431)
T 2bas_A 259 SPSET 263 (431)
T ss_dssp CCBSS
T ss_pred CCCCC
T ss_conf 17985
No 7
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-43 Score=364.70 Aligned_cols=221 Identities=15% Similarity=0.162 Sum_probs=198.3
Q ss_pred HHHCCHHHHHCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 64100355411468822144210000000035775530230357888977996799899999999999998871589984
Q gi|254780468|r 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 (963)
Q Consensus 715 l~~~~~~l~~QPi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~~~~~~~~~~ 794 (963)
+..++|.++||||+++++|++.|||+|+||+++++ .++|++|++.+|+.+++.++|+|+++++++.++.|++ .
T Consensus 1 ~~~~~F~l~yQPiv~~~~g~i~g~EaL~R~~~~~~-~~~~~~f~~~~~~~~l~~~l~~~v~~~~~~~l~~~~~----~-- 73 (235)
T 3kzp_A 1 MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAVP-RFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPN----D-- 73 (235)
T ss_dssp ----CCEEEEEEEEBTTTCCEEEEEEEEECSCSSC-CCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSTT----S--
T ss_pred CCCCCEEEEECCEEECCCCCEEEEEEEEECCCCCC-CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC----C--
T ss_conf 98774899980239989999999999987389989-8497998999998682799999999999888875146----5--
Q ss_pred EEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHH-----------HHCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 999976977943914899999999881999546999971337-----------750999899999999988989999188
Q gi|254780468|r 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV-----------VMGNPERSRLLLGRLRKIGISLTLDDF 863 (963)
Q Consensus 795 ~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~-----------~~~~~~~~~~~~~~l~~~G~~ialDdF 863 (963)
.++||+|+.+|.+++|.+++. +...+++++++|+||+. ...+...+.+.++++|+.||+++||||
T Consensus 74 ~l~iNls~~~l~~~~~~~~l~----~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~ialDdf 149 (235)
T 3kzp_A 74 RFAINIAPQQLFYIETLHWLD----KLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDV 149 (235)
T ss_dssp CEEEEECGGGGGSHHHHHHHH----HTGGGGGGEEEEECCCCCCCCGGGTTSCHHHHHHHHHHHHHHHHHTTCEEEECST
T ss_pred EEEEEECHHHHCCHHHHHHHH----HHHCCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 299994799963858889999----8604421023331067762410121233220499999999999976996885257
Q ss_pred CCCHHHHHHHHHCCCCEEEEEHHHHCCC--CHHH-HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCC
Q ss_conf 7764548889727998999716885399--9457-999999999999779809997039989999899809989940520
Q gi|254780468|r 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 (963)
Q Consensus 864 G~g~ssl~~L~~l~~d~iKiD~sfv~~~--~~~~-~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~ 940 (963)
|+|++++++|.++|+|+||||++++++. +.++ +.++++++.+||++|++||||||||+++++.++++||||+|||||
T Consensus 150 G~g~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~v~~i~~~a~~~~~~vIaegVEt~~~~~~l~~lGvd~~QG~~~ 229 (235)
T 3kzp_A 150 SCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLV 229 (235)
T ss_dssp TSTTCCHHHHHHHGGGCSEEEEEGGGGTTSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSTHHHHHHHHTTCCSCEEEEC
T ss_pred CCCCCCHHHHHHCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCEE
T ss_conf 98741077885279867614156776530231126899999999999869989997189599999999869999644810
Q ss_pred CCCCCH
Q ss_conf 689998
Q gi|254780468|r 941 ASPLGF 946 (963)
Q Consensus 941 ~~P~~~ 946 (963)
+||+|.
T Consensus 230 ~~P~P~ 235 (235)
T 3kzp_A 230 NKPFPV 235 (235)
T ss_dssp CCCEEC
T ss_pred EECCCC
T ss_conf 037779
No 8
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=100.00 E-value=2.4e-36 Score=308.39 Aligned_cols=179 Identities=27% Similarity=0.386 Sum_probs=159.4
Q ss_pred EEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHH
Q ss_conf 98530577312321663067753240669999999999998755338984899999767857988842778899999999
Q gi|254780468|r 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 (963)
Q Consensus 516 ~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~i 595 (963)
..++++.|+.+++++++|+||+|||||||++|.++++.+++++++.+ .+.+|+++|||+||.|||+|||.+||++|+++
T Consensus 271 ~~~~~~~~~~~~~l~~la~~D~LTgL~NR~~~~~~l~~~i~~a~r~~-~~~al~~lDlD~FK~iND~~GH~~GD~vL~~v 349 (459)
T 1w25_A 271 KRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGG-DPVSALLIDIDFFKKINDTFGHDIGDEVLREF 349 (459)
T ss_dssp HHHHHHHHSSSSCCSTTCCBCTTTCCBCHHHHHHHHHHHHHHHHTSS-CCCEEEEEEETTHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCHHCCHHHCCCCHHHHHHHHHH
T ss_conf 77778999999876641276865687129999998899999987429-87999996043014021134826789999999
Q ss_pred HHHHHHHCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHH-HCEEEEC--CEEEEEEEEEEEEECCCCCCCHHH
Q ss_conf 9999983489976999806410202556699899999876555431-0115525--467999999877645898899899
Q gi|254780468|r 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLL--EREITVTASIGFASWTSSKITSSE 672 (963)
Q Consensus 596 a~~L~~~~~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~i~~t~siGi~~~~~~~~~~~~ 672 (963)
|++|++.++++|.+||+|||||++++++.+ .+.+..++++++..+ ..|+... +..+.+|+|||++.+|.++.++++
T Consensus 350 a~~L~~~~r~~d~vaR~GGDEF~ill~~~~-~~~a~~~a~ri~~~i~~~~f~~~~~~~~~~vt~SiGia~~~~~~~~~~~ 428 (459)
T 1w25_A 350 ALRLASNVRAIDLPCRYGGEEFVVIMPDTA-LADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEA 428 (459)
T ss_dssp HHHHHHTSCTTSEEEECSSSEEEEEETTCC-HHHHHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEECCSTTCCHHH
T ss_pred HHHHHHHCCCCCEEEEECCCEEEEEECCCC-HHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEEEEEEECCCCCCHHH
T ss_conf 999997289886899985767999978999-9999999999999996689366589889999999999971799998999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 999999999999870897405201
Q gi|254780468|r 673 MLKNAELAMYHAKHRGGNHVESFR 696 (963)
Q Consensus 673 ll~~Ad~Al~~Ak~~g~~~~~~~~ 696 (963)
++++||.|||+||++|+|++....
T Consensus 429 Ll~~AD~Amy~AK~~Grnrvv~~~ 452 (459)
T 1w25_A 429 LLKRADEGVYQAKASGRNAVVGKA 452 (459)
T ss_dssp HHHHHHHHHHHHHHTTSSCEEECC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 999999999999971999599800
No 9
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with ggdef-domain, structural genomics; 1.95A {Geobacter sulfurreducens}
Probab=99.96 E-value=2.9e-29 Score=251.35 Aligned_cols=172 Identities=25% Similarity=0.353 Sum_probs=148.0
Q ss_pred ECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 53057731232166306775324066999999999999875533898489999976785798884277889999999999
Q gi|254780468|r 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 (963)
Q Consensus 518 DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~ 597 (963)
+++.+++.+++|+++|+||+|||||||++|.++++..+.++++.. .+++|+++|||+||.||++|||..||.+|+.+|+
T Consensus 167 ~~~~~~~~~~~L~~~a~~D~LTGL~NR~~f~~~l~~~l~~~~~~~-~~~ali~idid~fk~Ind~~G~~~gD~lL~~va~ 245 (342)
T 3ezu_A 167 ALFRLWNEARQLAAQSHFDALTGVMTRAGFFKTVGSLAYAAQRSG-SNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAE 245 (342)
T ss_dssp HHHHHHHHHHHHHHHHHBCTTTCSBCHHHHHHHHHHHHHHHHHHT-CEEEEEEEEEEECCCCC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999999998171766572469999999999999987519-9579999850788998886095458899999999
Q ss_pred HHHHHCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEE---CCCCCCCHHHHH
Q ss_conf 99983489976999806410202556699899999876555431011552546799999987764---589889989999
Q gi|254780468|r 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS---WTSSKITSSEML 674 (963)
Q Consensus 598 ~L~~~~~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~---~~~~~~~~~~ll 674 (963)
+|++.+++++.+||++||+|++++|+. +.+.+..+++++++.+..+ .+..+.+++|+|++. .++.+.+.++++
T Consensus 246 ~L~~~~~~~d~vaR~ggdeF~vll~~~-~~~~a~~~aerl~~~i~~~---~~~~~~~t~siGva~~~~~~~~~~~~~~Ll 321 (342)
T 3ezu_A 246 TITSHLRRSDVVGRYDGDEFVVYLSPV-EPASLRTVAENLRRSIEEE---SARMVPVTASIGVAQGILGTDVDGGIEELV 321 (342)
T ss_dssp HHHHTCCTTCEEEECSSSEEEEEESSC-CHHHHHHHHHHHHHHHHHH---TTTTCCEEEEEEEEEEECCSCHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHHHCC---CCCEEEEEEEEEEEEECCCCCCCCCHHHHH
T ss_conf 987422557633336898899995899-9999999999999998610---587212799999996104799999899999
Q ss_pred HHHHHHHHHHHHHCCCCEEE
Q ss_conf 99999999998708974052
Q gi|254780468|r 675 KNAELAMYHAKHRGGNHVES 694 (963)
Q Consensus 675 ~~Ad~Al~~Ak~~g~~~~~~ 694 (963)
++||.|||+||++|+|++.+
T Consensus 322 ~~Ad~AL~~AK~~G~Nrvvv 341 (342)
T 3ezu_A 322 RLADECLMQAKYTGKNKVVV 341 (342)
T ss_dssp HHHHHHHHHHHHSCSSSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999999829997996
No 10
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
Probab=99.96 E-value=3.1e-27 Score=234.99 Aligned_cols=180 Identities=23% Similarity=0.307 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 57731232166306775324066999999999999875533898489999976785798884277889999999999999
Q gi|254780468|r 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 (963)
Q Consensus 521 ~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~ 600 (963)
+.++.+++|++++++|+|||||||++|.++++..+.++.+.+ .+.+++++|||+||.||++|||..||.+|+.+++++.
T Consensus 159 ~~~~~~~~l~~la~~D~LTGL~NR~~l~~~l~~~l~~~~r~~-~~~al~~idID~Fk~ind~~G~~~gd~lL~~va~~l~ 237 (358)
T 3bre_A 159 QLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQ-SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIR 237 (358)
T ss_dssp HHHHHHHHHHHHHHBCTTTCSBCHHHHHHHHHHHHHHHHHHT-CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999998481866684448999999999999998629-9789999988546777750060455899999999998
Q ss_pred HHC-CCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHC---EEEECCEEEEEEEEEEEEEC--CCCCCCHHHHH
Q ss_conf 834-8997699980641020255669989999987655543101---15525467999999877645--89889989999
Q gi|254780468|r 601 ELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM---PINLLEREITVTASIGFASW--TSSKITSSEML 674 (963)
Q Consensus 601 ~~~-~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~t~siGi~~~--~~~~~~~~~ll 674 (963)
+.+ ++.+.++|+|||+|++++++.+ .+.+..+++++++.+.. ++........+|+|||++.+ +.++.+.++++
T Consensus 238 ~~~~r~~d~vaR~ggdeF~ill~~~~-~~~a~~~aerl~~~i~~~~~~~~~~~~~~~lt~SiGIa~~~~~~~~~~~~~ll 316 (358)
T 3bre_A 238 EGCSRSSDLAARYGGEEFAMVLPGTS-PGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLI 316 (358)
T ss_dssp TTCCSTTCEEEEEETTEEEEEEETCC-HHHHHHHHHHHHHHHHTTCCEESSSSTTEECCEEEEEEEECCCSSSCCTHHHH
T ss_pred HHHCCCCCEEEEECCCEEEEEECCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHH
T ss_conf 75066674899826947999957866-36899999999999996046534688853899999999977799997499999
Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCH
Q ss_conf 9999999999870897405201111106
Q gi|254780468|r 675 KNAELAMYHAKHRGGNHVESFRVSSFRS 702 (963)
Q Consensus 675 ~~Ad~Al~~Ak~~g~~~~~~~~~~~~~~ 702 (963)
++||.|||+||+.|+|++.+|+..+...
T Consensus 317 ~~Ad~AL~~AK~~G~n~v~~~~~~~~~~ 344 (358)
T 3bre_A 317 EMADQALYQAKNNGRNQVGLMEQPVPPA 344 (358)
T ss_dssp HHHHHHHHHHHTTTSSSEEEECC-----
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 9999999999984899799938989967
No 11
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=99.95 E-value=1.7e-26 Score=229.06 Aligned_cols=167 Identities=26% Similarity=0.407 Sum_probs=149.2
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 21663067753240669999999999998755338984899999767857988842778899999999999998348997
Q gi|254780468|r 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 (963)
Q Consensus 528 ~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~ 607 (963)
+|+++|++|++||||||++|.++++..+++. +..+.++++|+||+|+.||+.||++.||++|+.++++|++.+++++
T Consensus 2 rl~~lA~~D~lTgL~Nr~~f~~~l~~~~~~~---~~~~~~l~~i~Id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~~~ 78 (178)
T 3mtk_A 2 KLEFLAFYDELTGLPNKNSLIRWLNLKVSQM---DCIDTYLIFLEVRDLEKLNVTYGYDLVDELIIHISKRIKDIAGEGN 78 (178)
T ss_dssp CHHHHHHBCTTTCSBCHHHHHHHHHHHHHSS---CCTTEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC---CCCCEEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7789851572248603999999999999855---3898699999887289998870970366899989999998547787
Q ss_pred EEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 69998064102025566998999998765554310115525467999999877645898899899999999999999870
Q gi|254780468|r 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 (963)
Q Consensus 608 ~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~ 687 (963)
.+||++||+|+++++... ....++++...+..++..++..+.+++|+|++.+|.++.++++++++|+.||++||+.
T Consensus 79 ~~~R~~~d~F~ill~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~Al~~Ak~~ 154 (178)
T 3mtk_A 79 KAFKIGFDRFAIICKSEN----ISDFIERMLSQLLLPYNVNGNLIRVNFNIGAAQIENSNEAAANLMRRCDLALIKAKEE 154 (178)
T ss_dssp EEEEEETTEEEEEEECSS----HHHHHHHHHHHHTSCEEETTEEECCCEEEEEEECC----CHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCC----HHHHHHHHHHHCCCCEEECCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 799738988999879974----9999999998533772205527999888999997899999999999999999999985
Q ss_pred CCCCEEECCCCCCC
Q ss_conf 89740520111110
Q gi|254780468|r 688 GGNHVESFRVSSFR 701 (963)
Q Consensus 688 g~~~~~~~~~~~~~ 701 (963)
|+|++..|++.+..
T Consensus 155 G~n~~~~y~~~m~~ 168 (178)
T 3mtk_A 155 GLNEYVIFKPSIEI 168 (178)
T ss_dssp CTTCEEEEEC-CEE
T ss_pred CCCEEEEECHHHHH
T ss_conf 99989998879999
No 12
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=99.94 E-value=7.2e-26 Score=223.97 Aligned_cols=173 Identities=21% Similarity=0.263 Sum_probs=154.6
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 31232166306775324066999999999999875533898489999976785798884277889999999999999834
Q gi|254780468|r 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 (963)
Q Consensus 524 ~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~ 603 (963)
..||+|+++|++|++||||||++|.++++..+.++.+.. .++++++|+||+|+.+|+.||++.+|+++++++++|++.+
T Consensus 4 ~~e~~l~~~a~~D~lTgl~Nr~~f~~~l~~~l~~~~~~~-~~~~l~~i~i~~~~~i~~~~G~~~~d~~l~~~a~~l~~~~ 82 (177)
T 3hva_A 4 GSEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTAR-KPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQF 82 (177)
T ss_dssp --------CCCBCTTTCSEEHHHHHHHHHHHHHHHHHTC-CCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 999999998276776782059999999999999998549-9579999713368899998193467899999987620246
Q ss_pred CCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHH-HCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 89976999806410202556699899999876555431-01155254679999998776458988998999999999999
Q gi|254780468|r 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 (963)
Q Consensus 604 ~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~ 682 (963)
++.+.++|+++++|+++++..+ .+++..+++++.+.+ ..++...+.++.+++|+|++.++.+..+.++++++|+.||+
T Consensus 83 ~~~~~~~R~~~~~F~il~~~~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~Al~ 161 (177)
T 3hva_A 83 GEEADLARFGDSIFAALFKGKT-PEQAQAALQRLLKKVENHLFELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCAD 161 (177)
T ss_dssp GGGCEEEECSSSEEEEEEETCC-HHHHHHHHHHHHHHHHTCCEEETTEEECCCEEEEEEEECTTCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCEEEEEECCCC-HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 6515888658998999969999-999999999999999676644579616788999999958999999999999999999
Q ss_pred HHHHHCCCCEEECCCC
Q ss_conf 9987089740520111
Q gi|254780468|r 683 HAKHRGGNHVESFRVS 698 (963)
Q Consensus 683 ~Ak~~g~~~~~~~~~~ 698 (963)
+||+.|+|.+..|+|.
T Consensus 162 ~Ak~~G~n~~~~y~p~ 177 (177)
T 3hva_A 162 DAARKGGSQIKQYNPA 177 (177)
T ss_dssp HHHTTCSSEEEC----
T ss_pred HHHHHCCCEEEEECCC
T ss_conf 9999789979995899
No 13
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=99.94 E-value=1.9e-25 Score=220.51 Aligned_cols=169 Identities=24% Similarity=0.350 Sum_probs=151.4
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 32166306775324066999999999999875533898489999976785798884277889999999999999834899
Q gi|254780468|r 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 (963)
Q Consensus 527 ~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~ 606 (963)
|+|+++|++|++||||||++|.+.++..++++.+.+. +.++++|+||+|+.+|+.||++.+|.+++.++++|+..+++.
T Consensus 2 e~l~~la~~D~lTgL~Nr~~f~~~l~~~l~~~~~~~~-~~~l~~i~id~~~~i~~~~G~~~~d~ll~~va~~l~~~~~~~ 80 (177)
T 3ign_A 2 EQLAKLSMTDRLTGLLNRGTWENLVDAEYERFRRYGQ-ATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQS 80 (177)
T ss_dssp ---CTTSSBCTTTCSEEHHHHHHHHHHHHHHHHHHCC-CEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 6899875856133852589999999999999885099-689999988875510125487430367775433110011357
Q ss_pred CEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHH-HCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 76999806410202556699899999876555431-01155254679999998776458988998999999999999998
Q gi|254780468|r 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 (963)
Q Consensus 607 ~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak 685 (963)
+.+||+++|+|++++++.+. ..+..+.+++.+.+ ..++..++..+.+++|||++.++.++.++++++++|+.||+.||
T Consensus 81 ~~~~r~~~d~f~il~~~~~~-~~~~~~~~rl~~~i~~~~~~~~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~AL~~AK 159 (177)
T 3ign_A 81 DSAGRYGGEEFGIILPETDA-ESARVICERIREAIEKSTVSTSAGDIQYTVSMGIAQLTETPENYMQWMQKADEALYKAK 159 (177)
T ss_dssp SEEEECSSSEEEEEEETCCH-HHHHHHHHHHHHHHHTCCEECSSCEECCCEEEEEEECCSCCSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCEEEEECCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 72146349889997089997-99999999999999826444468874057889999647999889999999999999999
Q ss_pred HHCCCCEEECCC
Q ss_conf 708974052011
Q gi|254780468|r 686 HRGGNHVESFRV 697 (963)
Q Consensus 686 ~~g~~~~~~~~~ 697 (963)
+.|+|++.....
T Consensus 160 ~~G~N~v~~~~~ 171 (177)
T 3ign_A 160 ESGRNKVVVSLE 171 (177)
T ss_dssp HTTSSSEEECC-
T ss_pred HHCCCEEEEEEE
T ss_conf 829997999984
No 14
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=99.93 E-value=1.7e-24 Score=212.97 Aligned_cols=167 Identities=35% Similarity=0.519 Sum_probs=154.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 77532406699999999999987553389848999997678579888427788999999999999983489976999806
Q gi|254780468|r 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 (963)
Q Consensus 535 ~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~laR~~g 614 (963)
.|++||||||++|.++++..++++++.. .++++++|+||+|+.+|++||+..+|++++.++++|++.+++.+.+||+++
T Consensus 1 iD~lTGL~Nr~~f~~~l~~~l~~~~~~~-~~~~l~~i~i~~~~~i~~~~G~~~~d~~l~~va~~l~~~~~~~~~v~r~~~ 79 (171)
T 3icl_A 1 MDTVTGLPNRQLFCDRLLQALAAHERDG-NPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRDGDTVARIGG 79 (171)
T ss_dssp CCTTTCCCCHHHHHHHHHHHHHHCCCTT-SCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCTTCEEEEETT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9021273348999999999999987539-949999998418889888608267778999999999987799869999758
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 41020255669989999987655543101155254679999998776458988998999999999999998708974052
Q gi|254780468|r 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 (963)
Q Consensus 615 deFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g~~~~~~ 694 (963)
++|+++++...++++.....+++......++...+....+++++|++.++.++.++++++++|+.||+.||++|+|++..
T Consensus 80 ~~F~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Gia~~~~~~~~~~~ll~~A~~AL~~Ak~~g~n~~~~ 159 (171)
T 3icl_A 80 DKFTILLNGAKDTLNGALVAQKILDGLAQPFVFGAQQIVISVSIGIAVSPADGETMEQLLRNADTAMYHAKSRGKNNYQF 159 (171)
T ss_dssp TEEEEEESSCTTSTTTHHHHHHHHHHHTSCEEETTEEECCCEEEEEEETTTTCSSHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 85888669998499999999999999836001046564488899985278999999999999999999999849998999
Q ss_pred CCCCCCCH
Q ss_conf 01111106
Q gi|254780468|r 695 FRVSSFRS 702 (963)
Q Consensus 695 ~~~~~~~~ 702 (963)
|++.+...
T Consensus 160 y~~~m~~~ 167 (171)
T 3icl_A 160 FSPELEHH 167 (171)
T ss_dssp CCC-----
T ss_pred ECHHHCCC
T ss_conf 88787785
No 15
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=99.92 E-value=1.1e-23 Score=206.54 Aligned_cols=175 Identities=24% Similarity=0.338 Sum_probs=144.3
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHH-H
Q ss_conf 312321663067753240669999999999998755338984899999767857988842778899999999999998-3
Q gi|254780468|r 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE-L 602 (963)
Q Consensus 524 ~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~-~ 602 (963)
+..++|+++|++|++||||||++|.++++..++++.+.. .++++++|+||+|+.+|+.||+..+|.+++.+++++.+ .
T Consensus 21 ~~~~~l~~la~~D~lTGL~NR~~f~~~l~~~l~~~~~~~-~~~~l~~i~i~~~~~l~~~~G~~~~d~li~~~a~~l~~~~ 99 (206)
T 3i5c_A 21 NEVARLKKLVNSDGLTGLSNRRHFDEYLEMEWRRSLREQ-SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGC 99 (206)
T ss_dssp HHHHHHHTTCCBCTTTCSBCHHHHHHHHHHHHHHHHHHT-CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999543866683508899999999999987339-9489999989833488733597553099998888887742
Q ss_pred CCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHC---EEEECCEEEEEEEEEEEEEC--CCCCCCHHHHHHHH
Q ss_conf 48997699980641020255669989999987655543101---15525467999999877645--89889989999999
Q gi|254780468|r 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM---PINLLEREITVTASIGFASW--TSSKITSSEMLKNA 677 (963)
Q Consensus 603 ~~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~t~siGi~~~--~~~~~~~~~ll~~A 677 (963)
.++.+.++|+++|+|++++++.+ .+.....++.+.+.+.. ++...+..+.+++|||++.+ +.+..+.++++++|
T Consensus 100 ~~~~d~v~R~~~d~Favl~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~vt~siGia~~~~~~~~~~~~~ll~~A 178 (206)
T 3i5c_A 100 SRSSDLAARYGGEEFAMVLPGTS-PGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMA 178 (206)
T ss_dssp CSTTCEEEEEETTEEEEEEETCC-HHHHHHHHHHHHHHHHHTCCEECSSSTTEECCEEEEEEEECCCSTTCCTHHHHHHH
T ss_pred CCCCCEEEECCCCEEEEECCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHH
T ss_conf 55554446348876776638999-89999999999999997305524677755416899999986799998799999999
Q ss_pred HHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 99999998708974052011111
Q gi|254780468|r 678 ELAMYHAKHRGGNHVESFRVSSF 700 (963)
Q Consensus 678 d~Al~~Ak~~g~~~~~~~~~~~~ 700 (963)
+.||+.||+.|+|++..|+....
T Consensus 179 ~~AL~~AK~~G~n~i~~~~~~~~ 201 (206)
T 3i5c_A 179 DQALYQAKNNGRNQVGLMEQPVP 201 (206)
T ss_dssp HHHHHHHHHTTSSSEEEC-----
T ss_pred HHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999868997999369999
No 16
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=99.82 E-value=1.2e-19 Score=173.86 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=131.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHH---HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7753240669999999999998755338984899999767857---9888427788999999999999983489976999
Q gi|254780468|r 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK---KINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 (963)
Q Consensus 535 ~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk---~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~laR 611 (963)
.|++||||||++|.++++..++..+ +.+++.+++++|+ .||+.||++.||.+++.+++++++.. +.+.++|
T Consensus 2 ~D~lTGL~Nr~~~~~~l~~~~~~~~-----~~~~~~~~i~~~~~~~~i~~~~G~~~~d~ll~~~~~~l~~~~-~~~~~~R 75 (176)
T 3hvw_A 2 IDEPTGLYNRLRLQEDVSLRLQRDG-----ALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAEL-PDFTLYK 75 (176)
T ss_dssp -------CCHHHHHHHHHHHHHHHS-----EEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC-TTSCEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 8474473479999999999998489-----997899999875208899885085657999999999998714-4753799
Q ss_pred EECCCEEECCCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEEEEEEEEEEECCCCCCCHH-HHHHHHHHHHHHHHHHCCC
Q ss_conf 806410202556699899999876555431011552546799999987764589889989-9999999999999870897
Q gi|254780468|r 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRGGN 690 (963)
Q Consensus 612 ~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~siGi~~~~~~~~~~~-~ll~~Ad~Al~~Ak~~g~~ 690 (963)
+++++|+++++... .+.+...++++......++...+.++.++++||++.++.+..+.. ++++.|+.|++.||+.|++
T Consensus 76 ~~~~~F~il~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siGv~~~~~~~~~~~~~l~~~a~~Al~~Ak~~g~~ 154 (176)
T 3hvw_A 76 ISPTRFGLLLPRQQ-QEETESVCLRLLRAFESPVVCRGIPIKANVGLGVLPLADDTLDGDQDWLRLVVSAADDARDRGVG 154 (176)
T ss_dssp EETTEEEEEEEGGG-GGGHHHHHHHHHHHTTSCEEETTEEECCCCEEEEEEEEGGGTGGGSCCHHHHHHHHHHHHHHTCS
T ss_pred ECCCEEEEEECCCC-HHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 72998999968999-89999999999999827203678422240689999816998874999999999999999971999
Q ss_pred CEEECCCCCCC
Q ss_conf 40520111110
Q gi|254780468|r 691 HVESFRVSSFR 701 (963)
Q Consensus 691 ~~~~~~~~~~~ 701 (963)
.+ .|++....
T Consensus 155 ~~-~y~~~~~~ 164 (176)
T 3hvw_A 155 WA-RYNPPLDQ 164 (176)
T ss_dssp CE-ECCCCSST
T ss_pred EE-EECHHHHH
T ss_conf 89-98816669
No 17
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.76 E-value=2.6e-17 Score=155.02 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=113.7
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 88899999832593899998799789998889976289977833897898862697689999999999960789738999
Q gi|254780468|r 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 (963)
Q Consensus 403 ~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e 482 (963)
+.++++.|.+.++.|+|+||+.++.+++|++++++||+++++...+...|.+.|||+|++++.+.++..+.+.+ .++.+
T Consensus 5 se~~l~~a~~~A~~G~w~~d~~~~~~~~s~~~~~l~G~~~~~~~~~~~~~~~~Ihp~D~~~~~~~~~~~l~~~~-~~~~e 83 (125)
T 3nja_A 5 AEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDR-PFDVE 83 (125)
T ss_dssp ------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCC-CEEEE
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCC-CEEEE
T ss_conf 99999999987491999999799989997899988491978936899999875699899999999998530256-40499
Q ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHH
Q ss_conf 999869996899987226768799988999999985305773
Q gi|254780468|r 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 (963)
Q Consensus 483 ~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~ 524 (963)
||++++||+++|+.+++.++.+++|++.+++|++.|||++|+
T Consensus 84 ~Ri~~~dG~~~wv~~~~~~~~d~~G~~~~~~G~~~DITerK~ 125 (125)
T 3nja_A 84 YRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC
T ss_conf 999758987899999999999999799999999998826419
No 18
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.76 E-value=1.6e-17 Score=156.82 Aligned_cols=134 Identities=25% Similarity=0.468 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99974888999998325938999987997899988899762899778338978988626976899999999999607897
Q gi|254780468|r 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 (963)
Q Consensus 398 ~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~ 477 (963)
.++..+.||++.+++++++|+|+||+.++.+++|+++++++|++++++.+....|.+.+||+|++.+...+...+.+. .
T Consensus 2 ~aL~~seer~~~~~e~~~~gi~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~-~ 80 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHR-D 80 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHC-C
T ss_conf 189999999999998368107999899499999989999979498997587422104118888899999999987511-2
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 3899999986999689998722676879998899999998530577312321663
Q gi|254780468|r 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 478 ~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
.++.++|++++||+++|+.+++.|+.+++|++.+++|+++|||++|+++++|++.
T Consensus 81 ~~~~e~r~~~~dG~~~w~~~~~~~~~d~~g~~~~~~g~~~DIT~~k~~E~~L~~~ 135 (142)
T 3mr0_A 81 TYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVS 135 (142)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHH
T ss_conf 4210014552168557899765579999979999999999975999999999999
No 19
>3jyb_A Sensor protein; beta barrel, carbohydrate binding domain, signaling kinase, component system, RETS, kinase, phosphoprotein, transferase; 2.04A {Pseudomonas aeruginosa}
Probab=99.74 E-value=8.4e-17 Score=150.92 Aligned_cols=133 Identities=10% Similarity=0.047 Sum_probs=108.2
Q ss_pred CCEEEEEECCCCCCCHHHHHCCCCCCC--CCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCEEEEEEEEEEECCC
Q ss_conf 002889976998644989632867334--345544578887357999985598883359999556223114899985698
Q gi|254780468|r 47 TSITRIYVNQGEDFQVFTAADIDGISR--RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGS 124 (963)
Q Consensus 47 ~~~~~~~~d~~~~l~i~~v~~~~~~~~--~~~~~~~~~~~s~~W~~~~l~N~s~~~~~~~L~~~~p~Ld~i~~y~~~~~~ 124 (963)
..++.+|+|++++|+++||+++..... .....+.|++.+++|+||+|.|.+. +++|++++|.+|++++|.++.|+
T Consensus 7 ~~~~~vL~D~~~~Lti~~v~~~~~~f~~~~~~~~n~G~s~~~~Wlr~~l~n~~~---~~~L~i~~p~ld~v~lY~~~~~~ 83 (145)
T 3jyb_A 7 NQNWRLLRDESAQLRIADVLQRKEQFRPLAKRSFIFPASPQAVWLQVQLPAQKV---PSWLWIFAPRVQYLDYYLVQDGQ 83 (145)
T ss_dssp -CCEEEEEETTSCCCHHHHHTCGGGCEECSSSEEEECSCSCEEEEEEEECCCSS---CEEEEEECTTCSEEEEEEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHCHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCC---CCEEEECCCCCCEEEEEEECCCC
T ss_conf 788899998999978999858462576188887455888867899999537984---57799778877889999991995
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCC--EEEEEEECHHHHHH
Q ss_conf 368863387677323555566744778738998599999973898--01388628789999
Q gi|254780468|r 125 RRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLWEPNFYKD 183 (963)
Q Consensus 125 ~~~~~~~~~~~~~~~R~~~~~~~~f~l~l~p~~~~t~~~r~~s~~--~~~i~Lw~~~~~~~ 183 (963)
......+|+..++.+|++.|++++||++++ ++++|+|+|++|.+ .+++.+|++..+..
T Consensus 84 ~~~~~~~Gd~~p~~~R~~~~~~~~fpl~~~-~~~~t~ylRi~S~~~l~l~~~~~~~~~l~~ 143 (145)
T 3jyb_A 84 LVRDQHTGESRPFQERPLPSRSYLFSLPVD-GKPMTLYVRMTSNHPLMAWFDQIDEAGLVG 143 (145)
T ss_dssp EEEEEEESTTSCSCCCSCTTCCEEEEECCS-SSCEEEEEEEECSSCEEEEEEEEEHHHHTT
T ss_pred EEEEEECCCCCCCCCCCCCCCCCEEECCCC-CCCEEEEEEEECCCCEEEEEEEECHHHHHC
T ss_conf 278885377577433563566505751579-997899999953996487053218425320
No 20
>2xbz_A RETS-hybrid sensor kinase; phosphoprotein, biofilm, transferase; 2.65A {Pseudomonas aeruginosa}
Probab=99.72 E-value=2.9e-17 Score=154.67 Aligned_cols=132 Identities=10% Similarity=0.046 Sum_probs=107.1
Q ss_pred CCEEEEEECCCCCCCHHHHHCCCCCCCC--CCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCEEEEEEEEEEECCC
Q ss_conf 0028899769986449896328673343--45544578887357999985598883359999556223114899985698
Q gi|254780468|r 47 TSITRIYVNQGEDFQVFTAADIDGISRR--IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGS 124 (963)
Q Consensus 47 ~~~~~~~~d~~~~l~i~~v~~~~~~~~~--~~~~~~~~~~s~~W~~~~l~N~s~~~~~~~L~~~~p~Ld~i~~y~~~~~~ 124 (963)
.....+++|++++|+++||+.+.++..+ ....++|++.+++|+||+|.|++. +++|++++|.||++++|.++.++
T Consensus 33 ~~~~~vL~D~s~~Lti~dV~~~~~~F~p~~~~~ln~G~s~~a~Wlr~~l~n~~~---~~~L~i~~P~LD~vdlY~~~~~~ 109 (171)
T 2xbz_A 33 NQNWRLLRDESAQLRIADVLQRKEQFRPLAKRSFIFPASPQAVWLQVQLPAQKV---PSWLWIFAPRVQYLDYYLVQDGQ 109 (171)
T ss_dssp CCSEEEEEETTCCCCHHHHHTCGGGCEECSSSEEEECSEEEEEEEEEEECCCSS---CEEEEEECTTCSEEEEEEESSSS
T ss_pred CCCEEEEECCCCCCCHHHHHCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC---CCEEEECCCCCCEEEEEEECCCE
T ss_conf 986799987888877999856221765177667566888756899999379996---47799668874689999984990
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCC--EEEEEEECHHHHH
Q ss_conf 368863387677323555566744778738998599999973898--0138862878999
Q gi|254780468|r 125 RRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLWEPNFYK 182 (963)
Q Consensus 125 ~~~~~~~~~~~~~~~R~~~~~~~~f~l~l~p~~~~t~~~r~~s~~--~~~i~Lw~~~~~~ 182 (963)
......+|+..++.+|++.|++++||++++ ++++|+|+|++|.+ .+++.|++++.|.
T Consensus 110 ~~~~~~~Gd~~p~~~R~i~~r~~~fpl~l~-~~~~tvYlRv~S~~~l~~~~~l~~~~~l~ 168 (171)
T 2xbz_A 110 LVRDQHTGESRPFQERPLPSRSYLFSLPVD-GKPMTLYVRMTSNHPLMAWFDQIDEAGLV 168 (171)
T ss_dssp EEEEEEESCC------CCCCCEEEEEECCS-SCCEEEEEEEEESSCEEEEEEEEETTEET
T ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEECC-CCCEEEEEEEECCCCEEEEEEEECHHHHH
T ss_conf 789888388788665552355258985069-98689999996299738716864753600
No 21
>3eeh_A Putative light and redox sensing histidine kinase; structural genomics, PSI, MCSG, protein structure initiative; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.70 E-value=5.8e-16 Score=144.15 Aligned_cols=123 Identities=23% Similarity=0.384 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECC-CCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCC
Q ss_conf 88999748889999983259389999879-97899988899762899778338978988626976899999999999607
Q gi|254780468|r 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 (963)
Q Consensus 396 ~~~~l~~~~er~~~al~~s~~~i~~~d~~-~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~ 474 (963)
+++.+..+.||++.+++++++++|.+|++ +.++++|+++.+++|++++++.+....|.+.+||+|++.+++.++.+..+
T Consensus 2 ae~~l~~se~r~~~i~e~~~~~i~~~d~~~~~~~~~n~~~~~i~G~~~~~~~~~~~~~~~~v~p~d~~~~~~~~~~~~~~ 81 (125)
T 3eeh_A 2 AKQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMDG 81 (125)
T ss_dssp --------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 79999999999999986498238999999998999998999985978222246648898622951124455542100058
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 8973899999986999689998722676879998899999998530
Q gi|254780468|r 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 475 ~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
...+.|+|++++||+++|+.+++.|+.+++|++.+++|+++|||
T Consensus 82 --~~~~~e~ri~~~dg~~~wv~~~~~~~~d~~g~~~~~~g~~~DIT 125 (125)
T 3eeh_A 82 --ESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp --CCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred --CEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
T ss_conf --60589999995898789999999999999979999999999819
No 22
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.60 E-value=6.3e-14 Score=127.77 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=127.3
Q ss_pred HHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-EEEEEEEEECC
Q ss_conf 98325938999987997899988899762899778338978988626976899999999999607897-38999999869
Q gi|254780468|r 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAA 488 (963)
Q Consensus 410 al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~-~~~~e~r~r~~ 488 (963)
+.+.+++++|.+|.++..+++|+++++++||+++++.+. .|.+++||+|++.+.......++.... ....|+|++++
T Consensus 160 i~~~~~~~i~~~d~~~~~~~vn~~~~~~~Gy~~ee~~~~--~~~~~ihpeD~~~~~e~~~~~~~~~~~~~~~~e~r~~~~ 237 (309)
T 3gdi_A 160 IPPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIET--PVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTR 237 (309)
T ss_dssp CCGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTS--BHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECT
T ss_pred HHHCCCEEEEEECCCCCEECCCCCHHHHCCCCHHHHHCC--CCCEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 441384699998799963136800233338786785157--712266887899999999999983998732678999878
Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9968999872267687999889999999853057731232166306775324066999999999999
Q gi|254780468|r 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 (963)
Q Consensus 489 dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l 555 (963)
||+++|+..+++|+++..|+...++...+|||++|+.++.+...+.++..+...+.+.+.+.+...+
T Consensus 238 dG~~~wv~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~i~r~l 304 (309)
T 3gdi_A 238 NGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAPPCPEEKTPHPSVQELTEQIHRLL 304 (309)
T ss_dssp TSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSSCTTSCCSSCCCCSCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9929999999999990899966899999997776122667755450334324799999999999996
No 23
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.90A {Marinobacter aquaeolei VT8}
Probab=99.55 E-value=3.9e-13 Score=121.38 Aligned_cols=110 Identities=17% Similarity=0.340 Sum_probs=98.9
Q ss_pred CCCEEEEEECC-CCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCE
Q ss_conf 59389999879-97899988899762899778338978988626976899999999999607897389999998699968
Q gi|254780468|r 414 SGDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 (963)
Q Consensus 414 s~~~i~~~d~~-~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~ 492 (963)
+.++.|++|++ ++..|+||++++++|++++++.+ ...|.+.+||+|++.+...++....+. ...+.|+|+++++|.+
T Consensus 2 t~~i~W~~d~~t~~~~yvn~~~~~l~G~~~~e~~~-~~~~~~~i~ped~~~~~~~~~~~~~~~-~~~~~e~ri~~~~G~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKS-VEDWATRMHPEDQEWVVNFCVKQSECG-VDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCB-HHHHHHSBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEECTTSCE
T ss_pred CCEEEEEEECCCCEEEEECHHHHHHHCCCHHHHCC-CHHHHHHCCHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCCE
T ss_conf 97799999999998999998999988879999879-437877239978999999999998629-8268999975178634
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECHHHHHH
Q ss_conf 999872267687999889999999853057731
Q gi|254780468|r 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 (963)
Q Consensus 493 ~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~ 525 (963)
+|+.+++.+++|++|++.+++|+.+||||+...
T Consensus 80 ~~~~~~~~~~~d~~G~~~~~~G~~~DITee~~~ 112 (115)
T 3h9w_A 80 VWIRDVVHVVRDDSGEVEALIGFMFDISLEHHH 112 (115)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEECGGGGC-
T ss_pred EEEEECEEEEECCCCCEEEEEEEEEEECCCCCC
T ss_conf 766310047999998999999999989878766
No 24
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.49 E-value=8e-13 Score=118.88 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=104.6
Q ss_pred HHHHHHCCCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 9999832593899998---7997899988899762899778338978988626976899999999999607897389999
Q gi|254780468|r 407 QSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 (963)
Q Consensus 407 ~~~al~~s~~~i~~~d---~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~ 483 (963)
++.++++.+++++..| +++++++||+++++++||+++++.|... ..+.||++.+.....+...+..+ ..++.|.
T Consensus 13 l~~~~e~~~~~~vi~d~~~~dgrI~~vN~a~~~l~Gy~~eEliG~~~--~~l~~~~~~~~~~~~~~~~l~~~-~~~~~e~ 89 (332)
T 2wkq_A 13 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNA--RFLQGPETDRATVRKIRDAIDNQ-TEVTVQL 89 (332)
T ss_dssp -CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCG--GGGCCTTCCHHHHHHHHHHHHTT-CCEEEEE
T ss_pred HHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCH--HHHCCCCCCHHHHHHHHHHHHCC-CEEEEEE
T ss_conf 99999718982999878899996999867999987839999859987--78279888999999999999849-9089999
Q ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 9986999689998722676879998899999998530577312321663067
Q gi|254780468|r 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 (963)
Q Consensus 484 r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~ 535 (963)
+.+++||..+|+.++..|++|++|++.+++|+.+|||++|+++++|+.....
T Consensus 90 ~~~~kdG~~~~~~~~~~pi~d~~G~i~~~v~~~~DIT~~k~~e~el~~~~~~ 141 (332)
T 2wkq_A 90 INYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLI 141 (332)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9998999999999997621779999898778984131578999988766421
No 25
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.46 E-value=2.8e-12 Score=114.47 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=98.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 889999983259389999879978999888997628997783389789886269768-9999999999960789738999
Q gi|254780468|r 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYE 482 (963)
Q Consensus 404 ~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D-~~~~~~~l~~~~~~~~~~~~~e 482 (963)
.|+++.+++++++++|.+|.+|.++++||++++++||+++++.|.. +..+.||++ ++.+....+.+.+ +..++.|
T Consensus 4 ~~~~~~~~e~~~~~i~~~D~~g~i~~vN~a~~~~~G~~~eel~g~~--~~~l~~~~~~~~~~~~~~~~l~~--~~~~~~e 79 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKN--ESILSNGTTPRLVYQALWGRLAQ--KKPWSGV 79 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCB--GGGGCCTTSCHHHHHHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHHCCCHHEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--CCCCEECCCCHHHHHHHHHHHCC--CCCCEEE
T ss_conf 9999999971251539996999999996899998787956606754--00020024524555566544205--8863578
Q ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHH
Q ss_conf 9998699968999872267687999889999999853057
Q gi|254780468|r 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 (963)
Q Consensus 483 ~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~ 522 (963)
++.+++||+.+|+.++..|+++++|++.+++|+.+||||.
T Consensus 80 ~~~~~~dG~~~~~~~~~~pi~d~~G~~~~~~~v~~DITe~ 119 (120)
T 2gj3_A 80 LVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL 119 (120)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSC
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 8778489989999999999999998999999999835687
No 26
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.45 E-value=6e-12 Score=111.82 Aligned_cols=117 Identities=20% Similarity=0.181 Sum_probs=101.4
Q ss_pred HHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 89999983259389999879978999888997628997783389789886269768999999999996078973899999
Q gi|254780468|r 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 (963)
Q Consensus 405 er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r 484 (963)
+++..++++++||||.+|.+|.++++|+++++++|++++++.+.. +..+++|++.+.+...+...+.+ ++.++.|++
T Consensus 7 ~~~~~~fe~~~d~i~~~D~~g~i~~~N~~~~~l~G~~~~e~ig~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~ 83 (124)
T 3lyx_A 7 KQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQP--VNMLHVPGDTEHITSEVISAVEN-QGKWTGEIR 83 (124)
T ss_dssp HHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTTHHHHHHHHHHHHHH-TSCEEEEEE
T ss_pred HHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCC--HHEEECHHHHHHHHHHHHHHHHC-CCCCEEEEE
T ss_conf 999999955832618997999799891999999882999992997--53054604521022102344412-664106987
Q ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHH
Q ss_conf 9869996899987226768799988999999985305773
Q gi|254780468|r 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 (963)
Q Consensus 485 ~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~ 524 (963)
.+++||+++|+..++.|+.+++|++.+++++.+|||++|+
T Consensus 84 ~~~~~g~~~~v~~~~~p~~d~~g~~~~~i~~~~DITerKq 123 (124)
T 3lyx_A 84 MLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 5113794679998888899899999999999999966851
No 27
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal transduction, phototropin1; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.43 E-value=3.6e-12 Score=113.65 Aligned_cols=121 Identities=10% Similarity=0.086 Sum_probs=99.8
Q ss_pred HHHHHCCCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 999832593899998---79978999888997628997783389789886269768999999999996078973899999
Q gi|254780468|r 408 SLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 (963)
Q Consensus 408 ~~al~~s~~~i~~~d---~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r 484 (963)
+.+++++.+++..+| +++.++|+|+++++++||+++++.|.. +..+.+|++.......+...+... ..+..|++
T Consensus 5 ~~~~~~~~~~~vi~d~~~~d~~I~y~N~~~~~~~G~~~~el~gk~--~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~e~~ 81 (146)
T 2v0u_A 5 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN--CRFLQGPETDRATVRKIRDAIDNQ-TEVTVQLI 81 (146)
T ss_dssp CCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTSCHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred HHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCCCCHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 999981998199994889989799995899998892999982899--889745478899999999999809-97358998
Q ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 98699968999872267687999889999999853057731232166
Q gi|254780468|r 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 485 ~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
.+++||..+|++.++.|+.+++|++.+++++++|||++++++++++.
T Consensus 82 ~~~kdG~~~w~~~~~~pi~d~~g~~~~~i~~~~DITe~~~~~~e~e~ 128 (146)
T 2v0u_A 82 NYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREG 128 (146)
T ss_dssp EECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHH
T ss_pred EEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHH
T ss_conf 78518978999999999997998999999999978899999999999
No 28
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.42 E-value=8.8e-12 Score=110.50 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=99.4
Q ss_pred HHHHHHHHHCCCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCEE
Q ss_conf 8899999832593899998---79978999888997628997783389789886269768-9999999999960789738
Q gi|254780468|r 404 GERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRL 479 (963)
Q Consensus 404 ~er~~~al~~s~~~i~~~d---~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D-~~~~~~~l~~~~~~~~~~~ 479 (963)
.|++..++++++++++..| +++.++++|++++.++|++++++.|.. +..+.+|+. .+......+.+.+ +..+
T Consensus 5 ~~~l~~~~~~~~~~~~i~D~~~~d~~I~~vN~a~~~~~G~~~~eiiG~~--~~~l~~~~~~~~~~~~~~~~l~~--~~~~ 80 (130)
T 2z6d_A 5 SQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRN--CRFLQGPDTDKNEVAKIRDCVKN--GKSY 80 (130)
T ss_dssp --CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTSCHHHHHHHHHHHHT--TCCE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHH--CCCC
T ss_conf 8999999983889699997899979899998899998890999984875--32124865689999999998641--0132
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHH
Q ss_conf 9999998699968999872267687999889999999853057731232
Q gi|254780468|r 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 (963)
Q Consensus 480 ~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~ 528 (963)
..|++.+++||..+|+.+++.|+++++|++.+++|+.+|||++|+++.+
T Consensus 81 ~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~ke~~~e 129 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred CCEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHC
T ss_conf 0105888318948999999878998999999999999988087898826
No 29
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli K12} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.36 E-value=4.9e-12 Score=112.50 Aligned_cols=130 Identities=11% Similarity=0.016 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99748889999983259389999879978999888997628997783389789886269768999999999996078973
Q gi|254780468|r 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 (963)
Q Consensus 399 ~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~ 478 (963)
+.....+++..+++++++|++.+|.++.++++||+++++|||+++++.|.. +..++++++++.....++.........
T Consensus 34 ~~~~~~~~~~~~le~~~~gii~~d~~g~I~~~N~a~~~l~Gy~~~elig~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (167)
T 1v9y_A 34 ADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNN--IDMLIPRDLRPAHPEYIRHNREGGKAR 111 (167)
T ss_dssp ------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSB--GGGGSCGGGTTTHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999889999999973640328991979889995899999893999980664--223576311677867999999723444
Q ss_pred ---EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf ---899999986999689998722676879998899999998530577312321663
Q gi|254780468|r 479 ---LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 479 ---~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
...+...+++||..+|++++..++.+.++ ..++++++|||++|+++++++++
T Consensus 112 ~~~~~~e~~~~~kdG~~~~v~~~~~~i~~~~~--~~~v~~i~DITe~k~~ee~l~~L 166 (167)
T 1v9y_A 112 VEGMSRELQLEKKDGSKIWTRFALSKVSAEGK--VYYLALVRDASVEMAQKEQTRQL 166 (167)
T ss_dssp -----CEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEC--------------
T ss_pred CCCCCEEEEEEECCCCEEEEEEEEEEEEECCE--EEEEEEEEECHHHHHHHHHHHHH
T ss_conf 56520577776516854999999999997997--99999999977999999999714
No 30
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.36 E-value=3.4e-12 Score=113.81 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEEEECH--HHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 4888999998325938999987997899988--89976289977833897898862697689999999999960789738
Q gi|254780468|r 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTP--DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 (963)
Q Consensus 402 ~~~er~~~al~~s~~~i~~~d~~~~~~~~n~--~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~ 479 (963)
++.||++.++++++++||.+|.+++.+++|. .+...+|++.. ......|.+.+||+|++.+...++...++. ..+
T Consensus 1 s~~e~~~~l~e~~p~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~-~~~ 77 (118)
T 3icy_A 1 SNAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHA--GTTRLNTLSMIHHDDRHMLSNAYSKLREAK-HSL 77 (118)
T ss_dssp CHHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEET--TEEEEGGGGGBCGGGHHHHHHHHHHHHHSC-CEE
T ss_pred CCHHHHHHHHHCCCEEEEEEECCCCEEEEECCHHHHCCCCCCHH--HHCCCCHHHHCCHHHHHHHHHCCCCCCCCC-CCC
T ss_conf 98899999985586018999788988999647687453086957--865887899539878755552111121123-454
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 99999986999689998722676879998899999998530
Q gi|254780468|r 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 480 ~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
+.|+|++++||+++|+++++.|+++++|++.+++|+++|||
T Consensus 78 ~~e~~~~~~dG~~~w~~~~~~p~~d~~G~~~~~~g~~~DIT 118 (118)
T 3icy_A 78 TLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCCEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf 12014683799799999999999999989999999999749
No 31
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.36 E-value=5.1e-12 Score=112.37 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=97.1
Q ss_pred HHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 99832593899998799789998889976289977833897898862697689999999999960789738999999869
Q gi|254780468|r 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 (963)
Q Consensus 409 ~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~ 488 (963)
.++++++|.+...|.+|.++++||++++++||+++++.|. ++.+++||+|++.....+. +.......++|++++
T Consensus 3 ~~le~~~D~i~~~d~~G~i~~vN~~~~~~lGy~~eel~g~--~~~~~i~ped~~~~~~~~~----~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGS--FLKTFLHEEDQFLVESYFY----NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTS--BGGGGBCGGGHHHHHHHHH----CSCCSSCEEEEEECT
T ss_pred EEEEECCCEEEEECCCCEEEEECHHHHHHHCCCHHHHHHH--HHHCCCCHHHHHHHHHHHH----HHCCCEEEEEEEECC
T ss_conf 8869467369999899859999989999878984775553--0000288778999999998----504871857777989
Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHH
Q ss_conf 99689998722676879998899999998530577
Q gi|254780468|r 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 (963)
Q Consensus 489 dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~ 523 (963)
||+++|++.++.++.++.|+..+.+....||||+|
T Consensus 77 dG~~~wve~~~~~i~~~~g~~~r~i~~~~dite~k 111 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTTRAERTEREIILKMKVLEEE 111 (111)
T ss_dssp TSCEEEEEEEEEEC-------CCCEEEEEEEC---
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf 99899999999999889959707999998703379
No 32
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, signaling protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.34 E-value=3.1e-11 Score=106.06 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=94.4
Q ss_pred HHHHCCCCEEEEEEC---CCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 998325938999987---99789998889976289977833897898862697689999999999960789738999999
Q gi|254780468|r 409 LAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 (963)
Q Consensus 409 ~al~~s~~~i~~~d~---~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~ 485 (963)
.+++++++||+..|. ++.++++|+++++++||+++++.|.. +..+.+|+..+.....+...+.. +..+..|++.
T Consensus 3 ~lld~~~~~I~i~d~~~~dg~I~~~N~a~~~~~G~~~eel~g~~--~~~l~~~~~~~~~~~~~~~~l~~-~~~~~~e~~~ 79 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKN--CRFLQGKHTDPAEVDNIRTALQN-KEPVTVQIQN 79 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSC--GGGGCCTTCCHHHHHHHHHHHHH-TCCEEEEEEE
T ss_pred HHHHCCCCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEC
T ss_conf 69867974089997888989899996899999891999980530--11044301039999999999972-5750134201
Q ss_pred ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHH
Q ss_conf 869996899987226768799988999999985305773123216
Q gi|254780468|r 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 (963)
Q Consensus 486 r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~ 530 (963)
+++||..+|+.++..|+.+.+| .+++++++|||++|+++++|+
T Consensus 80 ~~~~G~~~~~~~~~~~i~~~~~--~~~i~~~~DITe~k~~e~~L~ 122 (132)
T 2pr5_A 80 YKKDGTMFWNELNIDPMEIEDK--TYFVGIQNDITKQKEYEKLLE 122 (132)
T ss_dssp ECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEEECCCE--EEEEEEEEECCHHHHHHHHHH
T ss_conf 2468855999999999993995--499999984779999999999
No 33
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A* 2k7s_A 2a24_B
Probab=99.33 E-value=2e-11 Score=107.56 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=98.4
Q ss_pred CCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCE
Q ss_conf 25938999987997899988899762899778338978988626976899999999999607897389999998699968
Q gi|254780468|r 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 (963)
Q Consensus 413 ~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~ 492 (963)
+.-+-|...|.+|.++++||++++++||+++++.+. .|.+.+||+|++...+.+.......+.....+++++++||++
T Consensus 10 ~~~~fI~~~~~dG~i~~~N~~~~~i~Gy~~~el~g~--~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 87 (121)
T 3f1p_B 10 QPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGK--NIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEW 87 (121)
T ss_dssp CCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTS--BGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEECTTSCE
T ss_pred CCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHHHH--HHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCE
T ss_conf 995399999899999999989998879699998531--244424864214776520000001244310589988799979
Q ss_pred EEEEEEEEEEECC-CCCEEEEEEEEEECHHHHH
Q ss_conf 9998722676879-9988999999985305773
Q gi|254780468|r 493 HWMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524 (963)
Q Consensus 493 ~w~~~~~~~i~~~-~g~~~~~~g~~~DIt~~~~ 524 (963)
+|++.+++|++|. +|++..++|+.+|||++|+
T Consensus 88 ~~v~~~~~~i~d~~~~~~~~ii~~~~dIt~~k~ 120 (121)
T 3f1p_B 88 LWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEECCCCCC
T ss_conf 999999999994899949999999999941206
No 34
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protein, PSI-2, protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.30 E-value=1.8e-10 Score=99.96 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 53788899974888999998325938999987997899988899762899778338978988626976899999999999
Q gi|254780468|r 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 (963)
Q Consensus 392 ~~~~~~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~ 471 (963)
+++..++.+..+.++++.+++++++++|.+|.+|.++++|+++++++||+++++.+.. +.++++|.|.+.....++.+
T Consensus 4 Erk~~e~~l~~se~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~--~~~l~~~~~~~~~~~~~~~~ 81 (126)
T 3bwl_A 4 ERKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRS--IWEFDLMFDAEDVQTQLSGF 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSB--GGGTBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHHHHCCCCHHHHHCCC--HHHHCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999999962986199987999899741205655388689984498--98926824899999999999
Q ss_pred HCCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 6078973899999986999689998722676879998899999998530
Q gi|254780468|r 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 472 ~~~~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
.. +.....|.+++++||+.+|+++++.++.. +|+ ..++|+++|||
T Consensus 82 ~~--~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~g~-~~~~~~~~DIT 126 (126)
T 3bwl_A 82 SV--DERRKFEGLYERRDGSTMSVEVHLLRFNL-EGE-DRFLAISRDIT 126 (126)
T ss_dssp CT--TCEEEEEEEEECTTSCEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred HH--CCCEEEEEEEECCCCCEEEEEEEEEEEEE-CCE-EEEEEEEEECC
T ss_conf 81--99669999999799999999999999997-995-99999999888
No 35
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two- component system; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.26 E-value=2.4e-10 Score=98.91 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 78889997488899999832593899998799789998889976289977833897898862697689999999999960
Q gi|254780468|r 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 (963)
Q Consensus 394 ~~~~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~ 473 (963)
...++.+..+.+|++.++++++++++.+|.+|.++++||+++++|||+++++.|.. +...++|.+++.....++....
T Consensus 5 ~~~e~~l~~~e~~~r~i~e~~~d~i~~~d~~g~i~~~N~~~~~l~g~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 1d06_A 5 LETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQN--LRILMPEPYRHEHDGYLQRYMA 82 (130)
T ss_dssp HHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999970762169998999699985999988697979974997--5434680117899999999997
Q ss_pred C---CCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 7---8973899999986999689998722676879998899999998530
Q gi|254780468|r 474 Y---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 474 ~---~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
. +......+++.+++||.++|++.+..++.+.++ ..++++++|||
T Consensus 83 ~~~~~~~~~~~e~~~~~~dg~~~~v~~~~~~i~~~~~--~~~~~~~rDIT 130 (130)
T 1d06_A 83 TGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT 130 (130)
T ss_dssp HCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECCE--EEEEEEEEECC
T ss_conf 0987535347899999489989999999999997994--89999999788
No 36
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.25 E-value=6.3e-11 Score=103.59 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 89997488899999832593899998799789998889976289977833897898862697689999999999960789
Q gi|254780468|r 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 (963)
Q Consensus 397 ~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~ 476 (963)
++++..+.+|++.+++++++++|.+|.+|+++++|+++++++|++++++.+. .|.+++||+|++.....++.+..+
T Consensus 3 ~e~l~~~e~~fr~l~e~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~el~g~--~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (117)
T 2r78_A 3 TENLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLAL--DWGVLSRGVDSGWAAASLARIVGG-- 78 (117)
T ss_dssp CCSHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTC--BTTTTTTCSTTSHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf 8999999999999997287206999399989998599999879397896398--577764213467899999999739--
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 73899999986999689998722676879998899999998530
Q gi|254780468|r 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 477 ~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
+....|++++++||+.+|++.++.++. +|+ ++|+.+|||
T Consensus 79 ~~~~~e~~~~~~dG~~~~v~~~~~~i~--d~~---~~~i~~DIT 117 (117)
T 2r78_A 79 EPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred CCEEEEEEEECCCCCEEEEEEEEEEEE--CCE---EEEEEEECC
T ss_conf 947999999938997999999999987--897---999999794
No 37
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.24 E-value=3.1e-10 Score=98.06 Aligned_cols=106 Identities=11% Similarity=0.139 Sum_probs=86.8
Q ss_pred CCCCEEEEEE---CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf 2593899998---7997899988899762899778338978988626976899999999999607897389999998699
Q gi|254780468|r 413 GSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 (963)
Q Consensus 413 ~s~~~i~~~d---~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~d 489 (963)
+..++++..| +++.++++|+++++++||+++++.|.. +..+.+|++.+.....+...+.+ +..++.|++.+++|
T Consensus 1 ~~~~~~vi~Da~~pd~~Ii~vN~a~~~~~Gy~~~eliG~~--~~~l~~~~~~~~~~~~~~~~l~~-g~~~~~e~~~~~kd 77 (109)
T 1n9l_A 1 GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN--CRFLQGEGTDPKEVQKIRDAIKK-GEACSVRLLNYRKD 77 (109)
T ss_dssp CCSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC--GGGGCCTTCCHHHHHHHHHHHHH-TCCEEEEEEEECTT
T ss_pred CCCCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCC--HHHCCCCCCCHHHHHHHHHHHCC-CCEEEEEEEEECCC
T ss_conf 9765199995989989699997899998895989975997--54121655798999999875506-96699999988799
Q ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEECHH
Q ss_conf 96899987226768799988999999985305
Q gi|254780468|r 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 (963)
Q Consensus 490 G~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~ 521 (963)
|+.+|++.+..|++|++|++.+++++.+|||+
T Consensus 78 G~~~~~~~~~~pv~d~~G~~~~~i~~~~DITa 109 (109)
T 1n9l_A 78 GTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 98999999999999999899999999998297
No 38
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A
Probab=99.24 E-value=7.3e-11 Score=103.10 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=95.0
Q ss_pred CCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEE
Q ss_conf 59389999879978999888997628997783389789886269768999999999996078973899999986999689
Q gi|254780468|r 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 (963)
Q Consensus 414 s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~ 493 (963)
+++-+...|+++.++++||++++++||+++++.+. .+.+.+||+|++...+.+.....+ +.....++|.+++||+.+
T Consensus 8 s~~fi~r~~~dg~i~~vN~~~~~~~G~~~~e~~g~--~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~e~~~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGR--SAYEFYHALDSENMTKSHQNLCTK-GQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTS--BGGGGBCGGGHHHHHHHHHHHHHH-SEEECCCEEEECTTSSEE
T ss_pred CCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CCEEEECHHHCCHHHHHHHHCCCC-CCCEEEECCCCCCCCCEE
T ss_conf 68289999899999999989998859897893164--413884614511022333211112-221010000288999599
Q ss_pred EEEEEEEEEECC-CCCEEEEEEEEEECHHHHH
Q ss_conf 998722676879-9988999999985305773
Q gi|254780468|r 494 WMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524 (963)
Q Consensus 494 w~~~~~~~i~~~-~g~~~~~~g~~~DIt~~~~ 524 (963)
|++++++|++++ +|++..++|+.+|||++|+
T Consensus 85 w~~~~~~~i~d~~~~~~~~ii~~~~dIt~~k~ 116 (117)
T 3f1p_A 85 WLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECCCCCC
T ss_conf 99999999996899929999999999962014
No 39
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.22 E-value=5.4e-10 Score=96.06 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 88999748889999983259389999879978999888997628997783389789886269768999999999996078
Q gi|254780468|r 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 (963)
Q Consensus 396 ~~~~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~ 475 (963)
.++++..+..++..+++++++||+.+|.++.++++|++++.++|++++++.|.. +.+ +.|++.+.+...++......
T Consensus 13 ~~~aL~~s~~~l~~il~~~~~gI~~~D~~g~i~~~N~~~~~~~g~~~~~~ig~~--~~~-~~~~~~~~~~~~~~~~~~~~ 89 (152)
T 3mxq_A 13 QSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKN--ILE-LFPESADYLKRKIDTALVIE 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSB--HHH-HSGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCHHEEEECCCCCEEEEECCCHHHHCCCHHHHCCCC--HHH-HHCCHHHHHHHHHHHHHHHC
T ss_conf 999999999999999970180419996998299992543577598899963887--898-73250999999999999709
Q ss_pred CCEE-----------EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHH
Q ss_conf 9738-----------999999869996899987226768799988999999985305773123
Q gi|254780468|r 476 RGRL-----------QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 (963)
Q Consensus 476 ~~~~-----------~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~ 527 (963)
.... ....+-...+|..+|+.++..|+++.+|++.+++.+++||||++++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~d~~g~v~g~i~~~~DITe~~~~eq 152 (152)
T 3mxq_A 90 SSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ 152 (152)
T ss_dssp SCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC-----
T ss_pred CCEEEEEECCCCEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHCC
T ss_conf 962654310221221133334467854898666898799899999999999999357887149
No 40
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=99.21 E-value=3.9e-11 Score=105.26 Aligned_cols=127 Identities=8% Similarity=0.049 Sum_probs=98.1
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHC----CCCCE
Q ss_conf 88899999832593899998799789998889976289977833897898862697689999999999960----78973
Q gi|254780468|r 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG----YRRGR 478 (963)
Q Consensus 403 ~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~----~~~~~ 478 (963)
..+++..+++.+++++|.+|.++..+++|+.+..++|+++.++.+. .|...+||+|.+......+.... ..+..
T Consensus 146 ~~~~~~~l~~~~~~~i~~~d~d~~~~~~n~~~~~~~g~~~~e~~g~--~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 1wa9_A 146 YKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGR--SIMDFYHHEDLSVMKETYETVMKKGQTAGASF 223 (368)
T ss_dssp CCSTTCBCCTTSCEEEEEEETTCBEEEECGGGHHHHCCCHHHHTTS--BGGGGBCTTTHHHHHHHHHHHHHHTTSTTCCE
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 6767899985197579998499988972244677508675774488--54332488889999999999998365568852
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 89999998699968999872267687999889999999853057731232166
Q gi|254780468|r 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 479 ~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
...++|++++||.++|++.++.++++..|+..+++++.+|||+++++++.+..
T Consensus 224 ~~~e~r~~~kdG~~~~~~~~~~~~~~~~g~~~~~i~~~~dIt~~~~~e~~l~~ 276 (368)
T 1wa9_A 224 CSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEA 276 (368)
T ss_dssp ECCCEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSSCTTSC
T ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHH
T ss_conf 56455448579959999997599986999858999999991407654999975
No 41
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.21 E-value=3.6e-10 Score=97.45 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=83.8
Q ss_pred CEEEEEE---CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCE
Q ss_conf 3899998---7997899988899762899778338978988626976899999999999607897389999998699968
Q gi|254780468|r 416 DIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 (963)
Q Consensus 416 ~~i~~~d---~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~ 492 (963)
.-.+.+| +++.++++||++++++||+++++.|....+.-..+|++.......+...+.. +..+..|++.+++||+.
T Consensus 2 ~~~~i~da~~~D~~I~~vN~a~~~~~Gy~~~e~~gk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~e~~~~~~dg~~ 80 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLG-AEERKVEIAFYRKDGSC 80 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHT-TCCEEEEEEEECTTSCE
T ss_pred CCEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHC-CCCCEEEEEEECCCCCE
T ss_conf 60999838899897999988999987978678448974115765102317778888887752-36420168899489989
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECHHH
Q ss_conf 999872267687999889999999853057
Q gi|254780468|r 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 (963)
Q Consensus 493 ~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~ 522 (963)
+|+..++.|++|++|++.+++++++||||+
T Consensus 81 ~w~~~~~~pi~d~~G~i~~~v~~~~DITeR 110 (110)
T 1byw_A 81 FLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 999989899998998999999999978899
No 42
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.20 E-value=2.7e-10 Score=98.45 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=95.7
Q ss_pred HHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 99832593899998799789998889976289977833897898862697689999999999960789738999999869
Q gi|254780468|r 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 (963)
Q Consensus 409 ~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~ 488 (963)
..+++.+|++|.+|.+|.++++|+++.+++|++++++.+. .+.+..++++.+.....++....++. ...|++++++
T Consensus 3 ~ile~~~d~i~v~d~~g~i~~~N~~~~~~~G~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~ 78 (126)
T 3mjq_A 3 NFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSM--HILTITSAGKMAEGEKILAELFAGKK--ESLPLSLEKK 78 (126)
T ss_dssp TTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHS--BHHHHHCTTCHHHHHHHHHHHHHTCC--SEEEEEEECT
T ss_pred HHHHCCCCCEEEECCCCCEEEECHHHHHHCCCCHHHCCCH--HHHHHHHHCCCCCHHHHHHHHHCCCC--EEEEEEEECC
T ss_conf 8975093025999499949998148898669873552430--34433430013320333235553993--6899999748
Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHH
Q ss_conf 9968999872267687999889999999853057731232
Q gi|254780468|r 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 (963)
Q Consensus 489 dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~ 528 (963)
||+.+|+++++.++.+.++ ..++|+.+|||++|+|+..
T Consensus 79 dG~~~~v~~~~~~~~~~~~--~~i~~~~~DITerK~ae~~ 116 (126)
T 3mjq_A 79 EGTSIPAKARIWQGKWHNE--PCLFAIIKDLSKEERASSP 116 (126)
T ss_dssp TSCEEEEEEEEEEEESSSS--EEEEEEEEECC--------
T ss_pred CCCEEEEEEEEEEEEECCC--EEEEEEEEECCHHHHHCCH
T ss_conf 9949999999999998892--5999999989999987296
No 43
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein structure initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.20 E-value=1.6e-10 Score=100.43 Aligned_cols=127 Identities=16% Similarity=0.049 Sum_probs=101.3
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 88899999832593899998799789998889976289977833897898862697689999999999960789738999
Q gi|254780468|r 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 (963)
Q Consensus 403 ~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e 482 (963)
+.+++..++++++++|+..|.++.++++|+++ .+|+.+.++.|. .+.++++|++.+.+...++.+..++.... +
T Consensus 237 s~e~l~~il~~~p~~i~~~D~~g~i~~~N~a~--~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--e 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKDDRVRFFSPGE--RIFTRTPSVLGR--PVQLCHPPKSVYVVNKILKAFKEGRKKEA--T 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTTSBEEEECCSS--CSSCCCGGGTTC--BTTTSSCGGGHHHHHHHHHHHHHTSCSCE--E
T ss_pred CHHHHHHHHHCCCCCEEEECCCCCEEEECHHH--HHHCCCHHHCCC--CHHHHCCHHHHHHHHHHHHHHHCCCCEEE--E
T ss_conf 79999999972987789992899748986788--873888787297--06773987669999999999977996289--9
Q ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCC
Q ss_conf 99986999689998722676879998899999998530577312321663067753
Q gi|254780468|r 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 (963)
Q Consensus 483 ~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~l 538 (963)
+.. .++| +|+.++..|++|++|++.+++++.+|||++|++|++++-+.++|.-
T Consensus 311 ~~~-~~~g--~~~~~~~~p~~d~~G~~~g~v~~~~DIT~~k~~e~e~rl~~~~~~~ 363 (369)
T 3cax_A 311 FWL-RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGEKRLLDWRDEG 363 (369)
T ss_dssp EEE-EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSCCCSCCC----
T ss_pred EEE-EECC--EEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf 999-1199--8999999989999989999999999872999999999989887364
No 44
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.20 E-value=2.6e-10 Score=98.68 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=102.5
Q ss_pred EEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 99998799789998889976289977833897898862697689999999999960789738999999869996899987
Q gi|254780468|r 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 (963)
Q Consensus 418 i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w~~~ 497 (963)
|..+|.+|.++++|+++++++|++++++.|.. +..+.+|++.+.+.......... +.....+.+.++++|+.+|+..
T Consensus 2 i~i~D~~G~I~~~N~a~~~l~G~~~~eliG~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQD--HRIVNSGYHGKAYIRDMWRTISR-GNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSB--GGGGCCSCSCHHHHHHHHHHHTT-TCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCHHHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCCEEEEEE
T ss_conf 99997999999984899998893999995998--88928941357889999999743-8722358999723542587665
Q ss_pred EEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-H
Q ss_conf 226768799988999999985305773123216630677532406699999999999987553389848999997678-5
Q gi|254780468|r 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-Y 576 (963)
Q Consensus 498 ~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~-f 576 (963)
+..|+.+..|...++++...|+|++++.++++. ++...++ ..+.+++++|.+. +
T Consensus 79 ~~~~i~~~~g~~~~~~~~~~d~~~~~~~~~~~~-------------------~~~~~~~------~~~~~i~~~D~~g~i 133 (227)
T 3ewk_A 79 TIVPLMDNAGKPRQYISIRRDITAQKEAEAQLA-------------------RLKQAMD------ANSEMILLTDRAGRI 133 (227)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTTTHHHHHHH-------------------HHHHHHH------TCCSEEEEECTTSCE
T ss_pred EEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHH-------------------HHHHHHH------HHHHHHEEECCCCEE
T ss_conf 666764047871000479842788999999987-------------------6799999------876465377699779
Q ss_pred HHHHHH
Q ss_conf 798884
Q gi|254780468|r 577 KKINDV 582 (963)
Q Consensus 577 k~iN~~ 582 (963)
..+|+.
T Consensus 134 ~~~N~~ 139 (227)
T 3ewk_A 134 IYANPA 139 (227)
T ss_dssp EEECHH
T ss_pred EEECHH
T ss_conf 999789
No 45
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen fixation, PER-ARNT-SIM, metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.19 E-value=4.8e-10 Score=96.53 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=96.6
Q ss_pred CCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC---EEEEEEEEECCCC
Q ss_conf 5938999987997899988899762899778338978988626976899999999999607897---3899999986999
Q gi|254780468|r 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADN 490 (963)
Q Consensus 414 s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~---~~~~e~r~r~~dG 490 (963)
.+|||+..|.+|.++++|++++++|||+++++.|. .+..+++|++++.....++........ ....++..+++||
T Consensus 2 ~pdgi~~~D~~G~I~~~N~~~~~l~G~~~~elig~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~G 79 (119)
T 2vv6_A 2 IPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQ--NVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDG 79 (119)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTS--BGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTS
T ss_pred CCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
T ss_conf 77499999897909976089999889399997687--4100045210146777777777402333456405898760377
Q ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 689998722676879998899999998530577312321663
Q gi|254780468|r 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 491 ~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
..+|++.+..++.+.+ ...++++++|||++|+++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~~~i~DiTe~k~~e~~L~~L 119 (119)
T 2vv6_A 80 TTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQEL 119 (119)
T ss_dssp CEEEEEEEEEEEEETT--EEEEEEEEEECC------------
T ss_pred CEEEEEEEEEEEEECC--CEEEEEEEEEHHHHHHHHHHHHCC
T ss_conf 4886687875787099--579999999818999999998288
No 46
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.16 E-value=1.4e-09 Score=92.63 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=92.6
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 88999998325938999987997899988899762899778338978988626976899999999999607897389999
Q gi|254780468|r 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 (963)
Q Consensus 404 ~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~ 483 (963)
.||++.+++++++++|.+|.++.++++|+++++++|++++++.+..... . +|.+.+.......... ........+.
T Consensus 2 E~~lr~i~d~~p~~i~~~D~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYD--I-FPEIGEEWKSVHRRGL-AGEVIRVEED 77 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHH--H-CTTCCHHHHHHHHHHH-TTCCEEEEEE
T ss_pred HHHHHHHHHHCCHHHEEECCCCCEEEECHHHHHHHCCCCCCCCCCCEEE--E-EECHHHHHHHHHHHHH-HCCCCCCEEE
T ss_conf 7999999982256729997999799990798998387620246751021--1-1000256667999998-5276421011
Q ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 9986999689998722676879998899999998530
Q gi|254780468|r 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 484 r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
+..+++|+.+|++.++.|++|.+|++.+++++.+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~pi~d~~G~~~~~i~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EECCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf 0013578379999999999999999999999999839
No 47
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.15 E-value=5.5e-10 Score=96.00 Aligned_cols=130 Identities=10% Similarity=0.037 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEE-CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 997488899999832593899998-7997899988899762899778338978988626976899999999999607897
Q gi|254780468|r 399 GIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 (963)
Q Consensus 399 ~l~~~~er~~~al~~s~~~i~~~d-~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~ 477 (963)
....+.|+++.++++++++++.+| .++.++++|+++.+++|++ ++.|. .+.+.+++.+.+.+...++........
T Consensus 11 ~~~~~~e~~r~l~e~~p~~i~i~d~~d~~i~~~N~~~~~~~G~~--~~~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (158)
T 3k3c_A 11 KTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQ--PAREVYPELEGQQIYEMLDRVYQTGEP 86 (158)
T ss_dssp HHTCCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTS--BHHHHSGGGGGTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECHHHHHHCCCH--HHCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 88878999999997006564999999988999804756655967--75697--566668602344369999998751343
Q ss_pred E----EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 3----899999986999689998722676879998899999998530577312321663
Q gi|254780468|r 478 R----LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 478 ~----~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
. ...+++....+|+.+|+..+..++++.+|++.+++++.+|||++|++++++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ae~~l~~~ 145 (158)
T 3k3c_A 87 QSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEAR 145 (158)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCEEEEEEEEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHH
T ss_conf 22320012331134454036898643455658787022504899888999999999999
No 48
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.14 E-value=4.8e-10 Score=96.49 Aligned_cols=114 Identities=10% Similarity=0.059 Sum_probs=89.9
Q ss_pred HHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCC-HHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 999983259389999879978999888997628997783389789886269-7689999999999960789738999999
Q gi|254780468|r 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRV 485 (963)
Q Consensus 407 ~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ih-p~D~~~~~~~l~~~~~~~~~~~~~e~r~ 485 (963)
++.++++++.||+. +.+|.++++|+++++++|++++++.+... .++.+ +++.............. +...+.|+++
T Consensus 5 ~~~l~~~~p~gI~~-~~dg~i~~~N~a~~~l~G~~~~~l~g~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~ 80 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SRDRVIEDCNDELAAIFRCARADLIGRSF--EVLYPSSDEFERIGERISPVMIA-HGSYADDRIM 80 (120)
T ss_dssp HHHHHHHCSSEEEE-EETTEEEEECHHHHHHTTSCHHHHTTCBG--GGGSSSHHHHHHHHHHHHHHHHH-HSCEEEEEEE
T ss_pred HHHHHHCCCCEEEE-ECCCEEEEECHHHHHHHCCCHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHH-CCCCCCEEEE
T ss_conf 99999729944999-88992999959999875468667414564--31002433202223678887752-2544100021
Q ss_pred ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHH
Q ss_conf 8699968999872267687999889999999853057731
Q gi|254780468|r 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 (963)
Q Consensus 486 r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~ 525 (963)
+++||+.+|+++++.++ +.+|+..+++++++||||+|+.
T Consensus 81 ~~~~G~~~~v~~~~~~~-~~~~~~~~~~~~~~DITe~kr~ 119 (120)
T 3mqq_A 81 KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred ECCCCEEEEEEEEEEEE-CCCCCEEEEEEEEEECCHHHHC
T ss_conf 44798399999999998-3699899999999999788855
No 49
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.09 E-value=9.9e-10 Score=93.95 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHC------CC
Q ss_conf 488899999832593899998799789998889976289977833897898862697689999999999960------78
Q gi|254780468|r 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG------YR 475 (963)
Q Consensus 402 ~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~------~~ 475 (963)
++.|+++.++++++|||+..|.+|.+.++||+++++|||+++++.|. .+..+++|.+++.+...+..... ..
T Consensus 4 ~s~e~~~~ii~~~~d~i~~~d~~G~I~~~N~aa~~llG~~~~eliG~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T 3mfx_A 4 SSLETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQ--DWRNFLTEHHQARYDNLLSHDVQLGTNCGQP 81 (129)
T ss_dssp HHHHHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTS--BGGGGBCTTCCGGGGCTTC----------CC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999998515051899899959998979996655997998599--1999818264776899999877653432035
Q ss_pred CCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHH
Q ss_conf 97389999998699968999872267687999889999999853057
Q gi|254780468|r 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 (963)
Q Consensus 476 ~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~ 522 (963)
......|++++++||+.+|++++..++.+.++ .++|+++||...
T Consensus 82 ~~~~~~E~~~~~~dG~~~~vels~s~i~~~~~---~~v~i~rDI~~~ 125 (129)
T 3mfx_A 82 VQHPAQETTLICASGKAKDVELSISYIPGHEP---MFVMVMHDLEHH 125 (129)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEEEEECSSSC---EEEEEEEEC---
T ss_pred CCCCEEEEEEECCCCCEEEEEEEEEEEECCCC---EEEEEEEECCCC
T ss_conf 56640479999579979999999999989996---999999989752
No 50
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.07 E-value=9.2e-10 Score=94.22 Aligned_cols=131 Identities=10% Similarity=0.020 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEE-CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9997488899999832593899998-799789998889976289977833897898862697689999999999960789
Q gi|254780468|r 398 QGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 (963)
Q Consensus 398 ~~l~~~~er~~~al~~s~~~i~~~d-~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~ 476 (963)
+....+.|+++.++++++++|+..| .++.++++|+++.+++|+. ++.|.. +.+..++.+.......++...+...
T Consensus 30 ~~~~~~~e~~r~l~e~~p~~i~~~d~~d~~i~~~N~a~~~~~G~~--e~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (185)
T 3kx0_X 30 DKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQP--AREVYPELEGQQIYEMLDRVYQTGE 105 (185)
T ss_dssp HHHTCCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSB--HHHHCTTSCSSSSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCHHHEEEEECCCCEEEEECHHHHHHHCHH--HHHCCC--CCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 888751999999996505457999999998998829999871959--881873--3235761456889999999985078
Q ss_pred CEEEE----EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 73899----999986999689998722676879998899999998530577312321663
Q gi|254780468|r 477 GRLQY----EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 477 ~~~~~----e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
..... +.+....+|..+|+.++..|+.+.+|++.+++++.+|||++|+++++|...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~g~~~g~v~~~~DITe~k~ae~~l~~~ 165 (185)
T 3kx0_X 106 PQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEAR 165 (185)
T ss_dssp CEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-----
T ss_pred CCEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 730036889997169875058999985666627895544205662278999999999999
No 51
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.75A {Streptococcus mutans UA159}
Probab=99.06 E-value=2.5e-09 Score=90.71 Aligned_cols=125 Identities=9% Similarity=-0.018 Sum_probs=94.9
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHH--HCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 88899999832593899998799789998889976--2899778338978988626976899999999999607897389
Q gi|254780468|r 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI--LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 (963)
Q Consensus 403 ~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~--lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~ 480 (963)
..+++..++++++++|+..|.++.++++|+++... +|..+.++.|. .+.+..+++..+.....++.+..+.+...
T Consensus 17 ~~~~l~~ild~~p~~i~~~D~~~~i~~~N~~~~~~~~~~~~~~e~iG~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~- 93 (151)
T 2qkp_A 17 SVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGR--NVELCHPPKVLDKVKKVFELLRNGQRDKV- 93 (151)
T ss_dssp CHHHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCCCGGGTTS--BGGGSSCHHHHHHHHHHHHHHHTTSBSEE-
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCEEEECCCCHHHHCCCCCCHHHCCC--EEEEECCHHHHHHHHHHHHHCCCCCCCCC-
T ss_conf 799999999708831999959999875534003342135681775676--67896483778999987753035654221-
Q ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 9999986999689998722676879998899999998530577312321663
Q gi|254780468|r 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 481 ~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
+...... +..+|+.++..|++|.+|++.+++++++|||++|++|++|++.
T Consensus 94 -~~~i~~~-~~gr~~~~~~~pi~d~~G~~~g~i~v~~DIT~~k~~e~~l~r~ 143 (151)
T 2qkp_A 94 -NMWFQSE-RLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRD 143 (151)
T ss_dssp -EEEEEET-TTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC----
T ss_pred -CEEEECC-CCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_conf -0232022-3238999986347889998999999999892999999999997
No 52
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.92 E-value=3.1e-08 Score=81.90 Aligned_cols=105 Identities=2% Similarity=-0.047 Sum_probs=83.1
Q ss_pred HHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 99999832593899998799789998889976289977833897898862697689999999999960789738999999
Q gi|254780468|r 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 (963)
Q Consensus 406 r~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~ 485 (963)
....++++++|+++..|.+|.++++||++++++|++++++.+.. +.+..++++++... .+.+ ++....|.+.
T Consensus 14 ~~~~i~~~~~d~i~~~d~~G~ii~~N~~~~~~~G~~~eel~~~~--~~~~~~~~~~~~~~----~~~~--~~~~~~e~~~ 85 (118)
T 3olo_A 14 FAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMN--LQDIDVDFALHDWE----EIRQ--KNNYTFKTRY 85 (118)
T ss_dssp HHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCB--GGGTBTTGGGSCHH----HHHH--HSEEEEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCC--HHHHCHHHHHHHHH----HHHH--CCCCCCCEEE
T ss_conf 99999953513089996998099989799987517655542640--42322057788999----9873--4664311230
Q ss_pred ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 86999689998722676879998899999998530
Q gi|254780468|r 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 486 r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
++++|+.+|++++++++.+.+++ .++++++|||
T Consensus 86 ~~~~g~~~~v~vs~~~i~~~~~~--~~~~~vrDIS 118 (118)
T 3olo_A 86 RSQSGRIFLVEMSLTFLEDQERR--FSCVFVREKS 118 (118)
T ss_dssp ECTTCCEEEEEEEEEEEEETTEE--EEEEEEEEC-
T ss_pred CCCCCCEEEEEEEEEEEEECCEE--EEEEEEEECC
T ss_conf 03588299999999999989989--9999999892
No 53
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.91 E-value=7.3e-08 Score=78.91 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 97488899999832593899998799789998889976289977833897898862697689999999999960789738
Q gi|254780468|r 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 (963)
Q Consensus 400 l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~ 479 (963)
.....+++..+++++++++|.+|.++.++++|+++++++|++++++.+. .+.+++||++.+.....+...+... ...
T Consensus 106 ~~~~~~~~~~~~~~~~~~i~~~D~~g~i~~~N~~~~~~~G~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~l~~~-~~~ 182 (227)
T 3ewk_A 106 AEAQLARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQ--SPSILDSPLADQETLAAMQEALQAG-QPW 182 (227)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSS--CGGGGBCTTSCHHHHHHHHHHHHHT-CCE
T ss_pred HHHHHHHHHHHHHHHHHHHEEECCCCEEEEECHHHHHHCCCCHHHHHCC--CCCCCCCCHHCCCCCCCCEEEECCC-CCE
T ss_conf 9999876799999876465377699779999789997649987896055--7552238023023122100000368-857
Q ss_pred EEEEEEEC------CCCCEEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 99999986------9996899987226768799988999999985
Q gi|254780468|r 480 QYEFRVRA------ADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 (963)
Q Consensus 480 ~~e~r~r~------~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~D 518 (963)
+.|++.++ +||+.+|+++++.|+++++|++.+++|+.+|
T Consensus 183 ~~e~~~~~~~~~~~~dg~~~w~~~~~~pi~d~~g~v~~~v~v~~D 227 (227)
T 3ewk_A 183 SGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp ECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEC
T ss_conf 999999984474567982999999999999899999999999989
No 54
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.90 E-value=5.9e-08 Score=79.67 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=94.8
Q ss_pred HHHHHHHH-HHHHHHCCCCEEEEEECCCCE-EEECHHHHHHHCCCHHHHCCC------HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99748889-999983259389999879978-999888997628997783389------7898862697689999999999
Q gi|254780468|r 399 GIFSDGER-QSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGP------IRNWLPYIHINDRDNFRTILDS 470 (963)
Q Consensus 399 ~l~~~~er-~~~al~~s~~~i~~~d~~~~~-~~~n~~~~~~lG~~~~~l~~~------~~~~~~~ihp~D~~~~~~~l~~ 470 (963)
++.++.++ .....+.++..+|..|...+. .++|+.+.+++||+++++... ...|.+.+||+|+.+.......
T Consensus 26 ~~l~~~~~~~~~~a~~~~~~~~~~D~~~~~~~y~s~~~~~~lGy~~~e~~~~~i~s~~~~~~~~~ihp~d~~~~~~~~~~ 105 (258)
T 3clo_A 26 GIVEQHQQFVRSLTEVNGGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRLMEYK 105 (258)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHCCCHHHCCCHHHHHCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999867981999988378899986549999589956514134430236778615887689999999999
Q ss_pred HHC---------CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHH
Q ss_conf 960---------78973899999986999689998722676879998899999998530577312321
Q gi|254780468|r 471 FVG---------YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 (963)
Q Consensus 471 ~~~---------~~~~~~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l 529 (963)
..+ ...-.+..++|+++++|+|+|+..++.++.++.+......+++.|++..+.....+
T Consensus 106 ~~~~l~~~~~~er~~y~~~~e~R~~~~~G~y~wi~~r~~vi~~~~~G~~~l~l~i~d~~~~~~~~~~~ 173 (258)
T 3clo_A 106 FFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTPAGNVWLIFCLYSLSADQRPEQGI 173 (258)
T ss_dssp HHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECTTSCEEEEEEEEEECSCCCCCSSC
T ss_pred HHHHHHHCCHHHHHCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHH
T ss_conf 99987507867642325789999974999899876202454137898775530233310012410233
No 55
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 43049, structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.89 E-value=2.5e-08 Score=82.70 Aligned_cols=113 Identities=15% Similarity=0.063 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99748889999983259389999879978999888997628997783389789886269768999999999996078973
Q gi|254780468|r 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 (963)
Q Consensus 399 ~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~ 478 (963)
+..++.+|++.++++++++||.+|.+|.++++|+++++++|++++++.|. .+.++++|++.+.+...+...++....
T Consensus 13 ~~~~s~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~- 89 (125)
T 3fc7_A 13 SQERTRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQ--QLSAVMDSEAANQRLEAGKSAVENGTA- 89 (125)
T ss_dssp -------------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTS--BGGGSSCHHHHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHHHHHHHHCCHHHEEECCCCCEEEEHHHHHHHHHCCCCCCCCC--CHHHCCCHHHHHHHHHHHHHHHHCCCE-
T ss_conf 99999999999997245561999899959998089897532033434568--799917986899999999999970984-
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 899999986999689998722676879998899999998530
Q gi|254780468|r 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 479 ~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
...+.+. ..+|+..+..|+ +.+|+..+++++.+|||
T Consensus 90 ~~~e~~~-----~~~~~~~~~~pv-~~~g~~~~~~~i~~DIT 125 (125)
T 3fc7_A 90 TRSEDAV-----GGRHYHNQYIPV-DSHRKSDTFQLVSRDIT 125 (125)
T ss_dssp EEEEEEE-----TTEEEEEEEEES-STTTTTTEEEEEEEECC
T ss_pred EEEEEEE-----EEEEEEEEEEEE-EECCCEEEEEEEEEECC
T ss_conf 9999999-----889999999999-91897999999999792
No 56
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A*
Probab=98.87 E-value=8e-08 Score=78.59 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=76.7
Q ss_pred CCEEEEEECCCC---EEEECHHHHHHHCCCHHHHCCCHHHHHHHC----------CHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 938999987997---899988899762899778338978988626----------9768999999999996078973899
Q gi|254780468|r 415 GDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPYI----------HINDRDNFRTILDSFVGYRRGRLQY 481 (963)
Q Consensus 415 ~~~i~~~d~~~~---~~~~n~~~~~~lG~~~~~l~~~~~~~~~~i----------hp~D~~~~~~~l~~~~~~~~~~~~~ 481 (963)
+.+++..|..+. ++++|+++++++||+++++.|+...++... ...|.+.+....+...+ .+.++.
T Consensus 35 s~ai~i~D~~~~D~~IiyvN~af~~ltGy~~~EliGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~ 112 (149)
T 3d72_A 35 SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR--NAEVQV 112 (149)
T ss_dssp TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHH--TCCEEE
T ss_pred CCCEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEE
T ss_conf 661999958999896999867999988868899859990240164312454322222699999999999865--980898
Q ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 99998699968999872267687999889999999
Q gi|254780468|r 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 (963)
Q Consensus 482 e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~ 516 (963)
|++.+++||+.+|++.++.|++|++|++++++|+.
T Consensus 113 E~~~~~kdG~~~wv~~~~~Pi~de~G~i~~~vGiq 147 (149)
T 3d72_A 113 EVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQ 147 (149)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEE
T ss_conf 99998699989999999999999998999999999
No 57
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.59 E-value=1.7e-08 Score=83.99 Aligned_cols=121 Identities=8% Similarity=0.062 Sum_probs=98.1
Q ss_pred HHHHCCCCEEEEEE-CCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 99832593899998-79978999888997628997783389789886269768999999999996078973899999986
Q gi|254780468|r 409 LAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 (963)
Q Consensus 409 ~al~~s~~~i~~~d-~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~ 487 (963)
.+++++...++..+ .+|.++|+|+++++++||+++++.|. +|.+++||+|++.+...+.............+.+.+.
T Consensus 19 ~~l~~~~~f~~vv~~~dG~i~yvN~~~~~~lGys~eel~g~--~~~dlihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 96 (309)
T 3gdi_A 19 YIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDA--KFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQ 96 (309)
T ss_dssp ----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCS--BGGGGBCTTTHHHHHHHTCTTSSCBCC----------
T ss_pred HHHHHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 99983698799999799879999779999869599999599--8989478346889999876653378764430566663
Q ss_pred CCCCEEEEEEEEEEEECCCC----CEEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 99968999872267687999----889999999853057731232166
Q gi|254780468|r 488 ADNQFHWMIIRIRPMSNSNG----DILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 488 ~dG~~~w~~~~~~~i~~~~g----~~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
++|..+|+.++..+..+..+ .+.++.|+.+|+++++..++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~~~ 144 (309)
T 3gdi_A 97 ECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCC 144 (309)
T ss_dssp ----CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEE
T ss_pred CCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCHHHHHH
T ss_conf 278724899998751036787425899999999532210011036789
No 58
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.58 E-value=2.6e-07 Score=74.43 Aligned_cols=104 Identities=9% Similarity=-0.002 Sum_probs=79.4
Q ss_pred HHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 99983259389999879978999888997628997783389789886269768999999999996078973899999986
Q gi|254780468|r 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 (963)
Q Consensus 408 ~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~ 487 (963)
..+++.+++|++..|.++.++++|+++++++|++++++.|+.. .+.+++.+...+...+...+.... ..+.+++...
T Consensus 15 e~l~~~~~~Gi~~lD~~gri~~vN~aa~~l~G~~~~eliGk~~--~~~~p~~~~~~~~~~~~~~~~~g~-~~~~e~~~~~ 91 (118)
T 3fg8_A 15 ENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVV--TEVLPETQGSYFDALCRKVLATGR-EQQTRVDSLY 91 (118)
T ss_dssp CCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBH--HHHCGGGTTSHHHHHHHHHHHHCC-CEEEEEECSS
T ss_pred HHHHHCCCCEEEEECCCCEEEEEHHHHHHHHCCCHHHHCCCCH--HHHCCHHHHHHHHHHHHHHHHCCC-EEEEEEEEEC
T ss_conf 9999718999999989997998969999997909999949949--996102210136899999997198-4999999988
Q ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHH
Q ss_conf 99968999872267687999889999999853057
Q gi|254780468|r 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 (963)
Q Consensus 488 ~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~ 522 (963)
++| +|+++++.|..+ +++++++|||++
T Consensus 92 ~~~--~w~~v~~~p~~d------G~~v~~rDIT~q 118 (118)
T 3fg8_A 92 SPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp STT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred CCC--EEEEEEEEECCC------EEEEEEEECCCC
T ss_conf 999--899999998699------899999984698
No 59
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=98.44 E-value=3e-07 Score=73.93 Aligned_cols=103 Identities=10% Similarity=0.035 Sum_probs=79.3
Q ss_pred CEEEEEECCCCEEEECHHHHHHHC-CCHHHHCCCHHHHHHHCCHHHHH--HHHHHHHHHHCCCCCEEEEEEEEECCCCCE
Q ss_conf 389999879978999888997628-99778338978988626976899--999999999607897389999998699968
Q gi|254780468|r 416 DIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRD--NFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 (963)
Q Consensus 416 ~~i~~~d~~~~~~~~n~~~~~~lG-~~~~~l~~~~~~~~~~ihp~D~~--~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~ 492 (963)
+=+-.-|+++.+++++++....+| |.++++.| .++.+++||+|++ ..+...+.+++. +.....+||++++||.|
T Consensus 8 ~F~trh~~~gki~~vd~~~~~~lg~y~peeLiG--~s~~~~~Hp~D~~~~~~~~~~~~~~~~-g~~~s~~YR~~~kdG~y 84 (132)
T 1oj5_A 8 SFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVR--KCIYAFFQPQGREPSYARQLFQEVMTR-GTASSPSYRFILNDGTM 84 (132)
T ss_dssp EEEEEECTTCCEEEEECHHHHTTCCSCHHHHHH--HHHHHHTSCBTTBCCHHHHHHHHHHHH-SEEECCCEEEECTTSCE
T ss_pred EEEEEECCCCCEEEECCHHHHHHCCCCHHHHCC--CCHHHHCCCCCHHHHHHHHHHHHHHHC-CCCCCEEEEEEEECCCE
T ss_conf 279998689729998733535543779799848--878895086640899999999999866-98045357999609919
Q ss_pred EEEEEEEEEEECCC-CCEEEEEEEEEECHH
Q ss_conf 99987226768799-988999999985305
Q gi|254780468|r 493 HWMIIRIRPMSNSN-GDILRYIGIANDITE 521 (963)
Q Consensus 493 ~w~~~~~~~i~~~~-g~~~~~~g~~~DIt~ 521 (963)
+|++.+++.+++.. |++-.++++.+=+.+
T Consensus 85 vwvqT~~~~~~~~~~~~~~~Ii~~h~i~~~ 114 (132)
T 1oj5_A 85 LSAHTRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf 999999999648888988899999887357
No 60
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=98.42 E-value=3.2e-09 Score=89.91 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=86.6
Q ss_pred CCE--EEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH----------CCCCCEEE--
Q ss_conf 938--9999879978999888997628997783389789886269768999999999996----------07897389--
Q gi|254780468|r 415 GDI--VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV----------GYRRGRLQ-- 480 (963)
Q Consensus 415 ~~~--i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~----------~~~~~~~~-- 480 (963)
-|| +...+.+|.++|+||++++++||+++++.|. ++.+++||+|++.+...+.... ......+.
T Consensus 6 ~~~f~~vi~~~dG~i~~vN~~~~~~lGys~~EliG~--~~~d~ihpeD~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (368)
T 1wa9_A 6 EDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGR--SFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVM 83 (368)
T ss_dssp CCCEEEEEETTTCBEEEECTTHHHHHCCCTTSSTTS--BGGGGBCTTTHHHHHHHTTSCC------------CCCEEEEE
T ss_pred CCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEE
T ss_conf 686899999999889999869999879199998699--799965997999999985136765201124555661689998
Q ss_pred -----------EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf -----------9999986999689998722676879998899999998530577312321663
Q gi|254780468|r 481 -----------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 (963)
Q Consensus 481 -----------~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~ 532 (963)
.+++.+.++|.+.|+..+.+++.+..|....+.++.+|||+++++++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Dite~~~~e~~l~~~ 146 (368)
T 1wa9_A 84 LRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSY 146 (368)
T ss_dssp EECSCCCSSCCSSSCCCCCCEEEEEEECCBCCCCCCCC------CCSCCCEEEEEEEECCCSC
T ss_pred EECCCCCEECCEEEEEECCCEEEEEEEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 621256146443666313864899999888871235677302330102089999888887656
No 61
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein, APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.37 E-value=4.8e-06 Score=64.29 Aligned_cols=109 Identities=8% Similarity=-0.018 Sum_probs=78.4
Q ss_pred HHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 89999983259389999879978999888997628997783389789886269768999999999996078973899999
Q gi|254780468|r 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 (963)
Q Consensus 405 er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r 484 (963)
+....++++.++||+..|.++.++++|+++++++|++++++.|+.. .+.+++++... ..+.......+.....+..
T Consensus 7 ~~~~~il~~~~~~viv~D~~g~I~~~N~aa~~llG~s~~~~~g~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 82 (115)
T 3b33_A 7 SLPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSL--SQLIQHASLDL--ALLTQPLQSGQSITDSDVT 82 (115)
T ss_dssp CHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBH--HHHCSEEECCT--HHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCH--HHHCCCCHHHH--HHHHHHHHCCCCEEEEEEE
T ss_conf 9999998504666999989999999995561300101465529558--99468816788--9999999829956889999
Q ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 986999689998722676879998899999998530
Q gi|254780468|r 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 485 ~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
.+++|+.+|++++..|+.+++|.. ++..++||.
T Consensus 83 -~~~~G~~~~v~v~~spi~~~~~~~--ili~~rdid 115 (115)
T 3b33_A 83 -FVVDGRPLMLEVTVSPITWQRQLM--LLVEMRKID 115 (115)
T ss_dssp -EEETTEEEEEEEEEEEEEETTEEE--EEEEEEEC-
T ss_pred -EECCCEEEEEEEEEEEEEECCCEE--EEEEEEECC
T ss_conf -960990999999999999799619--999999689
No 62
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.35 E-value=2.7e-07 Score=74.40 Aligned_cols=104 Identities=8% Similarity=0.100 Sum_probs=83.9
Q ss_pred HCCCCEEEEEECC-CCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC---EEEEEEEEEC
Q ss_conf 3259389999879-97899988899762899778338978988626976899999999999607897---3899999986
Q gi|254780468|r 412 LGSGDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRA 487 (963)
Q Consensus 412 ~~s~~~i~~~d~~-~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~---~~~~e~r~r~ 487 (963)
+..+++|+..|.+ |.++++|++++++|||+++++.+. .+.+++++++.+.....+....+.... ....+..+++
T Consensus 5 ~~~n~AI~~~d~~~g~I~~~N~~a~~l~Gys~~el~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (114)
T 1ll8_A 5 PEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQ--KLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTS--BGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred HHCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHHCC--CHHHHCCCCCHHHHHHHHHHHHHCCCCEECEEEEEEEEEC
T ss_conf 33081799999999999996399998867266988498--7336149205999999999999658971000015998880
Q ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 99968999872267687999889999999853
Q gi|254780468|r 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 (963)
Q Consensus 488 ~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DI 519 (963)
+||..+|++++.+++..+++. .++++++||
T Consensus 83 ~dG~~~~v~~s~~~i~~~~~~--~~l~vl~dv 112 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQERRL--CCVVVLEPV 112 (114)
T ss_dssp TTCCCEEEECCEECCBSSSSB--EEEEEEEEC
T ss_pred CCCEEEEEEEEEEEEEECCEE--EEEEEEEEC
T ss_conf 699699999999999999948--999999965
No 63
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.26 E-value=1.1e-05 Score=61.32 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=73.2
Q ss_pred HHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 99983259389999879978999888997628997783389789886269768-99999999999607897389999998
Q gi|254780468|r 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVR 486 (963)
Q Consensus 408 ~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D-~~~~~~~l~~~~~~~~~~~~~e~r~r 486 (963)
...+++.++|++..|.+|.++++|+++++++|++++++.|. ++.+.++|++ .+.+...+..........-..++. .
T Consensus 20 ~~~Ld~lp~gii~lD~~G~I~~~N~a~e~l~G~~~ee~iG~--~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~-~ 96 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGK--NFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYT-F 96 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTS--BCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEE-E
T ss_pred HHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHEECCCCCCHHHHHHHHHHHHCCCCEEEEEEE-E
T ss_conf 99986788249999599998860068998768576877597--88566787334689999999999759962799999-9
Q ss_pred CCCCCEEEEEEEEEEEECCCC
Q ss_conf 699968999872267687999
Q gi|254780468|r 487 AADNQFHWMIIRIRPMSNSNG 507 (963)
Q Consensus 487 ~~dG~~~w~~~~~~~i~~~~g 507 (963)
+++|..+|++++.....+.+|
T Consensus 97 ~~~g~~~~V~v~~~~~~~g~~ 117 (125)
T 1nwz_A 97 DYQMTPTKVKVHMKKALSGDS 117 (125)
T ss_dssp CTTSCCEEEEEEEEECSSSSE
T ss_pred ECCCCEEEEEEEEEEEECCCE
T ss_conf 139949999999999547996
No 64
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.21 E-value=2.2e-06 Score=66.97 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=82.2
Q ss_pred HHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 99832593899998799789998889976289977833897898862697689999999999960789738999999869
Q gi|254780468|r 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 (963)
Q Consensus 409 ~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~ 488 (963)
.++++.+++|+..|.++.++++|+++++++|++++++.|.. +.+..++++ .....+...+..... .....+
T Consensus 12 ~il~~~~~~i~~~d~~g~I~~~N~aa~~l~G~~~~~~~G~~--~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~ 82 (349)
T 3a0r_A 12 SILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRR--LKDLPDFEE---IGSVAESVFENKEPV----FLNFYK 82 (349)
T ss_dssp SSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCB--STTSTTTTH---HHHHHHHHHHHCCCC----EEECCC
T ss_pred HHHHHHHHHHEEECCCCEEEHHHHHHHHHHCCCHHHHCCCC--HHHCCCHHH---HHHHHHHHHHCCCEE----EEEEEE
T ss_conf 99986547748998969051715999999782989985998--789479788---999999998258808----999850
Q ss_pred CCCEEEEEEEEEEEECCCCC-EEEEEEEEEECHHHHHHHHHHHH
Q ss_conf 99689998722676879998-89999999853057731232166
Q gi|254780468|r 489 DNQFHWMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEGILC 531 (963)
Q Consensus 489 dG~~~w~~~~~~~i~~~~g~-~~~~~g~~~DIt~~~~~~~~l~~ 531 (963)
+|. +|+.++..|+.+.++. +.+++.+++|||+++++++++.+
T Consensus 83 ~~~-~~~~~~~~p~~~~~~~~~~g~v~~~~DITe~~~~e~~l~~ 125 (349)
T 3a0r_A 83 FGE-RYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKR 125 (349)
T ss_dssp BTT-BCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTH
T ss_pred CCC-EEEEEEEEEEECCCCCEEEEEEEEEEEHHHHHHHHHHHHH
T ss_conf 783-5889999999838987788999999834399999999999
No 65
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.11 E-value=3.7e-05 Score=57.08 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=67.2
Q ss_pred CCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 93899998799789998889976289977833897898862697689999999999960789738999999869996899
Q gi|254780468|r 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 (963)
Q Consensus 415 ~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w 494 (963)
++||+..|.+|+++++|+++++++|++++++.|.. +.+++++.+.. ..+....+.+.. .. .+.+. +.-+|
T Consensus 2 ~~gvi~~D~~g~I~~~N~~a~~~~g~~~~e~iG~~--~~~~~~~~~~~---~~~~~~~~~~~~-~~--~~~~~--~~~~~ 71 (96)
T 3a0s_A 2 ETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRR--LKDLPDFEEIG---SVAESVFENKEP-VF--LNFYK--FGERY 71 (96)
T ss_dssp CCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGSTTCHHHH---HHHHHHHHHTCC-EE--EEEEE--ETTEE
T ss_pred CEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHHHHHHHH---HHHHHHHHCCCE-EE--EEEEE--CCCEE
T ss_conf 86999997999999998799987496604406985--89940244442---589999845968-99--99991--49889
Q ss_pred EEEEEEEEECCCCC-EEEEEEEEEE
Q ss_conf 98722676879998-8999999985
Q gi|254780468|r 495 MIIRIRPMSNSNGD-ILRYIGIAND 518 (963)
Q Consensus 495 ~~~~~~~i~~~~g~-~~~~~g~~~D 518 (963)
+.++..|+++.+|+ +.+++.+++|
T Consensus 72 ~~~~~~Pi~d~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 72 FNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCEEEEEEEEEEC
T ss_conf 9999999894899999999999989
No 66
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.08 E-value=1.6e-05 Score=60.01 Aligned_cols=98 Identities=9% Similarity=-0.082 Sum_probs=73.3
Q ss_pred HHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 999983259389999879978999888997628997783389789886269768-9999999999960789738999999
Q gi|254780468|r 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRV 485 (963)
Q Consensus 407 ~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D-~~~~~~~l~~~~~~~~~~~~~e~r~ 485 (963)
...+++++++||+..|.++.++++|+++++++|++++++.|.. +.+.++|.+ .+.+.+.+.....+.......++..
T Consensus 24 ~~a~ld~~p~Gv~~~D~dg~I~~~N~aa~~ilG~s~eeliGr~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 101 (129)
T 1mzu_A 24 GTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRN--FFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVF 101 (129)
T ss_dssp -CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEE
T ss_pred HHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9999967990699998999799994899999784979986994--99953970126899999988752687636999996
Q ss_pred ECCCCCEEEEEEEEEEEECCCCCE
Q ss_conf 869996899987226768799988
Q gi|254780468|r 486 RAADNQFHWMIIRIRPMSNSNGDI 509 (963)
Q Consensus 486 r~~dG~~~w~~~~~~~i~~~~g~~ 509 (963)
+++|..+|++++.... .+|+.
T Consensus 102 -~~~g~~~~v~v~l~~~--~~~~~ 122 (129)
T 1mzu_A 102 -DFQMAPVRVQIRMQNA--GVPDR 122 (129)
T ss_dssp -ECSSCEEEEEEEEEEC--SSTTE
T ss_pred -ECCCCEEEEEEEEEEE--CCCCE
T ss_conf -0389479999999992--58998
No 67
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=97.73 E-value=4.6e-06 Score=64.42 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99748889999983259389999879978999888997628997783389789886269768999999999996078973
Q gi|254780468|r 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 (963)
Q Consensus 399 ~l~~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~ 478 (963)
.+....+.+..++++.++||+.+|.++.++++|+++++++|++++++.+...... .++........... .+ ...
T Consensus 9 el~~~~~~~~~il~~~~dgii~~D~~g~I~~~N~~~~~~~g~~~~~i~~~~~~~~--~~~~~~~~~~~~~~---~~-~~~ 82 (118)
T 2w0n_A 9 EISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLS--HSWSQVVDVSEVLR---DG-TPR 82 (118)
T ss_dssp HHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTT--CCCSCTHHHHHHHH---TT-CCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHCCCHHHHC--CCHHHHHHHHHHHH---CC-CEE
T ss_conf 9999999999999705353499979999999888999988909899688426543--78156668999996---59-848
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECH
Q ss_conf 899999986999689998722676879998899999998530
Q gi|254780468|r 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 (963)
Q Consensus 479 ~~~e~r~r~~dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt 520 (963)
...+. ..++ +|+.++..|+.+ +|++.+++++++|||
T Consensus 83 ~~~~~---~~~~--~~~~~~~~pi~~-~g~~~G~V~~~rDIT 118 (118)
T 2w0n_A 83 RDEEI---TIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCE---ESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred EEEEE---EECC--EEEEEEEEEEEE-CCEEEEEEEEEEECC
T ss_conf 99999---9899--999999999998-998999999999678
No 68
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.30A {Escherichia coli}
Probab=97.52 E-value=1.5e-05 Score=60.33 Aligned_cols=108 Identities=10% Similarity=0.031 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 48889999983259389999879978999888997628997783389789886269768999999999996078973899
Q gi|254780468|r 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 (963)
Q Consensus 402 ~~~er~~~al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~ 481 (963)
...+++..+++++++|++..|.+|.+.++|+++++++|++++++.+. .+.+++++.|.... ...........
T Consensus 77 ~~~~~~~~il~~~~dgii~~D~~g~i~~~N~aa~~l~g~~~~~~~g~--~~~~~~~~~~~~~~------~~~~~~~~~~~ 148 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNH--TAAQLINGFNFLRW------LESEPQDSHNE 148 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTS--BGGGTSTTCCHHHH------HHTCCCSCEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHHHC--CHHHHCCCHHHHHH------HHHCCCCCCEE
T ss_conf 99999999997404070899899959999989999879099999638--69996797568999------97177644119
Q ss_pred EEEEECCCCCEEEEEEEEEEEE----CCCCCEEEEEEEEEECHHH
Q ss_conf 9999869996899987226768----7999889999999853057
Q gi|254780468|r 482 EFRVRAADNQFHWMIIRIRPMS----NSNGDILRYIGIANDITEQ 522 (963)
Q Consensus 482 e~r~r~~dG~~~w~~~~~~~i~----~~~g~~~~~~g~~~DIt~~ 522 (963)
++ ..+|..+.++. .|+. +..|...+.+.+++|.|+.
T Consensus 149 ~v---~~~g~~~~~~~--~pi~~~~~d~~~~~~G~V~~lr~~~~~ 188 (190)
T 2jhe_A 149 HV---VINGQNFLMEI--TPVYLQDENDQHVLTGAVVMLRSTIRM 188 (190)
T ss_dssp EE---EETTEEEEEEE--EEETTTTEEEEEEEE-HHHHHHHHTTT
T ss_pred EE---EECCEEEEEEE--EEEEEECCCCCCEEEEEEEEEECHHHC
T ss_conf 99---99998999999--999986458983899999999848876
No 69
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliverdin, signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris CGA009} SCOP: d.110.2.1 d.110.3.9
Probab=96.96 E-value=0.0076 Score=38.50 Aligned_cols=146 Identities=9% Similarity=-0.012 Sum_probs=88.1
Q ss_pred EEEEEEC-CCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 8999987-997899988899762899778338978988626976899999999999607897389999998699968999
Q gi|254780468|r 417 IVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 (963)
Q Consensus 417 ~i~~~d~-~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w~ 495 (963)
.++..|. ++.++++|+++++++|++++++.|.. +.++++|++.++.+..+......... ..+++.++++|...|.
T Consensus 44 ~Llald~~d~~I~~vS~N~~~llG~~peellG~~--l~~ll~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~g~~~~~ 119 (337)
T 2ool_A 44 YLFVVSETDLRIASVSANVEDLLRQPPASLLNVP--IAHYLTAASAARLTHALHGGDPAAIN--PIRLDVVTPDGERAFN 119 (337)
T ss_dssp EEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCB--GGGGBCHHHHHHHHHHHCC----CCC--SEEEEEEETTEEEEEE
T ss_pred EEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCC--HHHHCCHHHHHHHHHHHHCCCCCCCC--CEEEEEECCCCCCEEE
T ss_conf 7999988999799986749988494989983998--88968999999999876315845588--6899985377884567
Q ss_pred EEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 87226768799988999999985305773123216630677532406699999999999987553389848999997678
Q gi|254780468|r 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 (963)
Q Consensus 496 ~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~ 575 (963)
...- ..+| .++..+.+.++.+..++. ...+...+.+..+
T Consensus 120 ~~~~----~~~~---~l~~ele~~~~~~~~~~~-------------------~~~l~~~~~~i~~--------------- 158 (337)
T 2ool_A 120 GILH----RHDS---IVILELEPRDESRYTNEF-------------------FRSVRVAIRRLQT--------------- 158 (337)
T ss_dssp EEEE----EETT---EEEEEEECCCCCSCHHHH-------------------HHHHHHHHHHHHT---------------
T ss_pred EEEE----ECCC---EEEEEEEECCCCCCHHHH-------------------HHHHHHHHHHHHH---------------
T ss_conf 9999----6498---058863444543125789-------------------9999999999984---------------
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCC
Q ss_conf 579888427788999999999999983489-97699980641
Q gi|254780468|r 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNR 616 (963)
Q Consensus 576 fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~-~~~laR~~gde 616 (963)
...-+++++.+++.+++.+.- ...+||+..|.
T Consensus 159 ---------s~dl~~ll~~~v~~vr~l~~~dRv~iy~f~~d~ 191 (337)
T 2ool_A 159 ---------AADLPTACWIAASEVRRITGFDRIKVYQFAADW 191 (337)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred ---------HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf ---------238999999999999998467769999953888
No 70
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=96.54 E-value=0.04 Score=32.64 Aligned_cols=110 Identities=12% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC-------CCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 09998999999999889899991887764548889727-------99899971688539994579999999999997798
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI-------PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l-------~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi 911 (963)
+|.....-+...|++.|+..-+.-+..|-..+.+|++- ++|.|=+|-.+ . +-+.-.+++.|-+....-++
T Consensus 16 D~~~~~~~l~~~L~~~g~~~~v~~~~~g~eAl~~l~~~~~~~~~~~pdlillD~~m-P--~~~G~el~~~ir~~~~~~~i 92 (149)
T 1i3c_A 16 DSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-P--KKDGREVLAEIKQNPDLKRI 92 (149)
T ss_dssp CCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-S--SSCHHHHHHHHHHCTTTTTS
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHCCCCCCEEEEECCC-C--CCCHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999769984799989999999999850022126898889984899-9--98649999999858044799
Q ss_pred EEEE-EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 0999-7039989999899809989940520689998999999985
Q gi|254780468|r 912 TIIA-KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 912 ~viA-egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
.||. .+-.+.+......++|++. |+.||...+++.+.+++
T Consensus 93 PvI~lT~~~~~~~~~~a~~~Ga~~----yl~KP~~~~~L~~~i~~ 133 (149)
T 1i3c_A 93 PVVVLTTSHNEDDVIASYELHVNC----YLTKSRNLKDLFKMVQG 133 (149)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSE----EEECCSSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 889995689999999999879989----99798999999999999
No 71
>3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396}
Probab=96.18 E-value=0.066 Score=30.94 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
+|+....-..+.|++.|...-++-+.+|-..+..+.+-++|.|=+|-.+ .+ .+.-.+++.+-+.....++.+| -.+
T Consensus 13 D~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~m-P~--~~G~el~~~ir~~~~~~~iPiI~lS~ 89 (144)
T 3kht_A 13 DNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL-PI--ANGFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC-GG--GCHHHHHHHHHSSSTTTTCCEEEEET
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC-CC--CCHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 8999999999999968998299998999999999971799999986999-99--99999999998378789991899988
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCC-CHHHHHHHHH
Q ss_conf 399899998998099899405206899-9899999998
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPL-GFNSILKLLK 954 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~-~~~~~~~~l~ 954 (963)
-.+.+......+.|++. |+.||+ +.+++...++
T Consensus 90 ~~~~~~~~~a~~~Ga~~----~l~KP~~~~~eL~~~i~ 123 (144)
T 3kht_A 90 NVSDDRAKQCMAAGASS----VVDKSSNNVTDFYGRIY 123 (144)
T ss_dssp TCCHHHHHHHHHTTCSE----EEECCTTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCCHHHHHHHHH
T ss_conf 89999999999869999----99699999999999999
No 72
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, protein structure initiative; 2.40A {Rhodospirillum rubrum atcc 11170}
Probab=96.14 E-value=0.06 Score=31.28 Aligned_cols=110 Identities=15% Similarity=0.286 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH---------HHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 09998999999999889899991887764548889---------727998999716885399945799999999999977
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL---------GYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNI 909 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L---------~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~l 909 (963)
+|.....-+.+.|++.|++.-+.-+.+|...+.+| ..-++|.|=+|-.+ -++ +.-.+++.|-+....-
T Consensus 12 Dd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~dlIilD~~m-P~~--dG~el~~~ir~~~~~~ 88 (152)
T 3heb_A 12 DDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDM--TGIDILKLVKENPHTR 88 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSS--BHHHHHHHHHHSTTTT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCC
T ss_conf 9999999999999977996389997888999999843204556650699989986899-999--8899999998487779
Q ss_pred CCEEE-EEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 98099-97039989999899809989940520689998999999985
Q gi|254780468|r 910 ETTII-AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 910 gi~vi-AegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
.+.|| -.+-.+.++.....+.|++. |+.||...+++.+.+++
T Consensus 89 ~iPvI~lTa~~~~~~~~~a~~~G~~~----yl~KP~~~~~L~~~i~~ 131 (152)
T 3heb_A 89 RSPVVILTTTDDQREIQRCYDLGANV----YITKPVNYENFANAIRQ 131 (152)
T ss_dssp TSCEEEEESCCCHHHHHHHHHTTCSE----EEECCSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 99589997769999999999869989----99798999999999999
No 73
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=96.09 E-value=0.077 Score=30.39 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
+++.....+.+.|++.|+++-. +.+|-..+..+.+-++|.|=+|-.+ . +.+.-.+++.|-+.....++.+|. .+
T Consensus 11 D~~~~~~~l~~~L~~~G~~v~~--a~~g~eal~~l~~~~pdliilD~~m-P--~~dG~el~~~ir~~~~~~~ipvI~ls~ 85 (138)
T 3c3m_A 11 DSPMIVDVFVTMLERGGYRPIT--AFSGEECLEALNATPPDLVLLDIMM-E--PMDGWETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHHSCCSEEEEESCC-S--SSCHHHHHHHHHHSTTTTTSCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEEECCC-C--CCCHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 9999999999999987999999--8999999999753899899970678-9--998899999998486558998799863
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3998999989980998994052068999899999998516
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
-.+.+......+.|++. |+.||...+++...+++..
T Consensus 86 ~~~~~~~~~~~~~G~~d----~l~KP~~~~~L~~~l~~~l 121 (138)
T 3c3m_A 86 KPLTPEEANEYGSYIED----YILKPTTHHQLYEAIEHVL 121 (138)
T ss_dssp SCCCHHHHHHTTTTCSE----EEECCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 79899999998679988----9989899999999999999
No 74
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=95.92 E-value=0.09 Score=29.83 Aligned_cols=109 Identities=15% Similarity=0.126 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
+|......+.+.|++.|+++.. +++|-..+..+++-++|.|=+|-.+ .++ +.-.+++.+-+....-++.+|+ .+
T Consensus 9 D~~~~~~~l~~~L~~~g~~v~~--a~~g~~al~~~~~~~pdlillD~~m-p~~--~G~el~~~ir~~~~~~~iPii~ls~ 83 (124)
T 1mb3_A 9 DNELNMKLFHDLLEAQGYETLQ--TREGLSALSIARENKPDLILMDIQL-PEI--SGLEVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESCHHHHHHHHHHHCCSEEEEESBC-SSS--BHHHHHHHHHHSTTTTTSCEEEEC-
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCC-CCC--CHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 8999999999999987999999--8999999999983799999978999-998--4799999998288779996899989
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.|++. |+.||...+++...+++.
T Consensus 84 ~~~~~~~~~~~~~G~~~----yl~KP~~~~~L~~~l~~~ 118 (124)
T 1mb3_A 84 FAMKGDEERIREGGCEA----YISKPISVVHFLETIKRL 118 (124)
T ss_dssp -----CHHHHHHHTCSE----EECSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 89989999999779989----998989999999999999
No 75
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=95.87 E-value=0.088 Score=29.91 Aligned_cols=109 Identities=16% Similarity=0.213 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-
Q ss_conf 0999899999999988--9899991887764548889727998999716885399945799999999999977980999-
Q gi|254780468|r 839 GNPERSRLLLGRLRKI--GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA- 915 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~--G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA- 915 (963)
++......+.+.|++. |+.+.. ..+|...+..+.+.++|.|=+|-.+ .++ +.-.+++.|-+....-++.+|+
T Consensus 16 D~~~~~~~l~~~L~~~~~~~~v~~--a~~g~eAl~~~~~~~pDlillD~~m-P~~--dG~el~~~ir~~~~~~~ipvI~l 90 (143)
T 3cnb_A 16 DDKEFADMLTQFLENLFPYAKIKI--AYNPFDAGDLLHTVKPDVVMLDLMM-VGM--DGFSICHRIKSTPATANIIVIAM 90 (143)
T ss_dssp SCHHHHHHHHHHHHHHCTTCEEEE--ECSHHHHHHHHHHTCCSEEEEETTC-TTS--CHHHHHHHHHTSTTTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 999999999999982789808999--8999999999972799999980888-999--86999999984788899849999
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 70399899998998099899405206899989999999851
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
.+-.+.+......+.|++. |+.||+..+++...+++.
T Consensus 91 t~~~~~~~~~~~~~~Ga~~----yl~KP~~~~~L~~~i~~~ 127 (143)
T 3cnb_A 91 TGALTDDNVSRIVALGAET----CFGKPLNFTLLEKTIKQL 127 (143)
T ss_dssp ESSCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 8489989999999769989----998989999999999999
No 76
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=95.84 E-value=0.096 Score=29.61 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH-------CCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 0999899999999988989999188776454888972-------799899971688539994579999999999997798
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY-------IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~-------l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi 911 (963)
+|......+.+.|++.|+..-+.-+.+|...+.+|++ .++|.|=+|-.+ .++ +.-.+++.|-+-...-++
T Consensus 10 Dd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdliilD~~m-P~~--dG~el~~~ir~~~~~~~i 86 (140)
T 1k68_A 10 DNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKK--DGREVLAEIKSDPTLKRI 86 (140)
T ss_dssp CCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSS--CHHHHHHHHHHSTTGGGS
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999679981899989999999999862454404799689998899-998--559999999838665899
Q ss_pred EEE-EEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 099-97039989999899809989940520689998999999985
Q gi|254780468|r 912 TII-AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 912 ~vi-AegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
.|| -.+-++++......++|++ .|+.||...+++...+++
T Consensus 87 Pvi~ls~~~~~~~~~~a~~~Ga~----~~l~KP~~~~~L~~~i~~ 127 (140)
T 1k68_A 87 PVVVLSTSINEDDIFHSYDLHVN----CYITKSANLSQLFQIVKG 127 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCS----EEEECCSSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHH
T ss_conf 89999578999999999987998----999798999999999999
No 77
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=95.81 E-value=0.075 Score=30.47 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
++........+.|++.|++ .++-.++|-..+..+++-++|.|=+|-.+ .+. +.-.+++.+-..-..-++.+|. .+
T Consensus 14 D~~~~~~~l~~~L~~~g~~-~v~~a~~~~~al~~~~~~~~dlii~D~~m-P~~--dG~~l~~~ir~~~~~~~~pii~ls~ 89 (129)
T 1p6q_A 14 DQVTSRLLLGDALQQLGFK-QITAAGDGEQGMKIMAQNPHHLVISDFNM-PKM--DGLGLLQAVRANPATKKAAFIILTA 89 (129)
T ss_dssp SSHHHHHHHHHHHHTTTCS-CEECCSSHHHHHHHHHTSCCSEEEECSSS-CSS--CHHHHHHHHTTCTTSTTCEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9899999999999987992-99998999999999971899899984588-999--8799999998385668982999980
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 399899998998099899405206899989999999851611
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~ 959 (963)
-.+.+......++|++ .|+.||...+++...+++-+..
T Consensus 90 ~~~~~~~~~~~~~G~~----~~l~KP~~~~~L~~~i~~vl~~ 127 (129)
T 1p6q_A 90 QGDRALVQKAAALGAN----NVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CCCHHHHHHHHHHTCS----CEECCCSSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHHHHHH
T ss_conf 4999999999987998----8998989999999999999985
No 78
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ...
Probab=95.75 E-value=0.1 Score=29.32 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
++..........|++.|+. .++-..+|-..+..+++-++|.|=+|-.+ .++ +.-.+++.+-.....-++.+|. .+
T Consensus 12 D~~~~r~~l~~~L~~~g~~-~v~~a~~g~~a~~~~~~~~~dliilD~~m-P~~--dG~el~~~ir~~~~~~~~piI~lt~ 87 (128)
T 1jbe_A 12 DFSTMRRIVRNLLKELGFN-NVEEAEDGVDALNKLQAGGYGFVISDWNM-PNM--DGLELLKTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp SCHHHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHTTCCCCEEEEESCC-SSS--CHHHHHHHHHC--CCTTCCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHCCCCCEEEEECCC-CCC--CHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 9899999999999987996-89998999999999762899999996999-999--9899999999756779993899989
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++. |+.||+..+++...+++
T Consensus 88 ~~~~~~~~~a~~~G~~~----~l~KP~~~~~L~~~l~~ 121 (128)
T 1jbe_A 88 EAKKENIIAAAQAGASG----YVVKPFTAATLEEKLNK 121 (128)
T ss_dssp SCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 89999999999879989----99898999999999999
No 79
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C
Probab=95.65 E-value=0.11 Score=29.05 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
+++.........|.+.|+.+.. +.+|...+..+.+-++|.|=+|-.+ .+. +.-.+++.+-+..+.-++.+|. .+
T Consensus 10 D~~~~~~~l~~~L~~~g~~v~~--a~~g~eal~~~~~~~pdliilD~~m-P~~--~G~el~~~ir~~~~~~~iPiI~lT~ 84 (122)
T 3gl9_A 10 DSAVLRKIVSFNLKKEGYEVIE--AENGQIALEKLSEFTPDLIVLXIMM-PVM--DGFTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHTTBCCSEEEECSCC-SSS--CHHHHHHHHHTSTTTTTSCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCC-CCC--CHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 9999999999999987999999--8999999999983799999851028-999--8899999998388789998999827
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.|++. |+.||...+++..-+++.
T Consensus 85 ~~~~~~~~~a~~~G~~~----yl~KP~~~~~L~~~v~~~ 119 (122)
T 3gl9_A 85 KGGEEDESLALSLGARK----VMRKPFSPSQFIEEVKHL 119 (122)
T ss_dssp CCSHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 99999999999879988----997989999999999998
No 80
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=95.53 E-value=0.12 Score=28.77 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEE-EEEE
Q ss_conf 099989999999998898999918877645488897279989997168853999457999999999999779809-9970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI-IAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~v-iAeg 917 (963)
+|......+.+.|...|-.-.++...+|-..+..+.+-++|.|=+|-.+ .++ +.-.+++.+-.-.. -...+ +..+
T Consensus 10 D~~~~~~~l~~~L~~~~~~~~v~~a~~g~eal~~~~~~~pdlvllD~~m-P~~--dG~el~~~ir~~~~-~~~~ii~~t~ 85 (130)
T 1dz3_A 10 DNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIM-PHL--DGLAVLERIRAGFE-HQPNVIMLTA 85 (130)
T ss_dssp SCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCC-SSS--CHHHHHHHHHHHCS-SCCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC-CCC--CHHHHHHHHHHCCC-CCCEEEEEEC
T ss_conf 9999999999999858993799998999999999985599999982899-999--88999999985599-9997999978
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH----HCCCCCC
Q ss_conf 39989999899809989940520689998999999985----1611026
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE----RFPLVKN 962 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~----~~~~~~~ 962 (963)
-.+.+......+.|++. |+.||...+++...+++ ..|+.|+
T Consensus 86 ~~~~~~~~~a~~~Ga~~----~l~KP~~~~~L~~~i~~~~~~~~p~~rk 130 (130)
T 1dz3_A 86 FGQEDVTKKAVELGASY----FILKPFDMENLAHHIRQVYGKTTPVVRK 130 (130)
T ss_dssp TTCHHHHHHHHHTTCEE----EEECSSCCTTHHHHHHHHHHCC------
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999869979----9979999999999999998237720059
No 81
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=95.48 E-value=0.069 Score=30.77 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999703
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegV 918 (963)
+|......+.+.|++.|+++- -+.+|-..+..+.+-++|.|=+|-.+-.+. +.-.+++.+-+-...-++.+|+-+-
T Consensus 13 Dd~~~~~~l~~~L~~~g~~v~--~a~~~~~al~~l~~~~pdliilD~~lp~~~--~G~~l~~~ir~~~~~~~iPii~lt~ 88 (127)
T 2gkg_A 13 SDTALSATLRSALEGRGFTVD--ETTDGKGSVEQIRRDRPDLVVLAVDLSAGQ--NGYLICGKLKKDDDLKNVPIVIIGN 88 (127)
T ss_dssp SCHHHHHHHHHHHHHHTCEEE--EECCHHHHHHHHHHHCCSEEEEESBCGGGC--BHHHHHHHHHHSTTTTTSCEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEECCCCCCC--CHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 999999999999998799999--989999999999847999999975777688--8999999998388889983899968
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 998999989980998994052068999899999998516
Q gi|254780468|r 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 919 E~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
.+..+.....+.|++ .|+.||...+++...+++..
T Consensus 89 ~~~~~~~~a~~~Ga~----dyl~KP~~~~~L~~~i~~~L 123 (127)
T 2gkg_A 89 PDGFAQHRKLKAHAD----EYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp GGGHHHHHHSTTCCS----EEEESSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHHHH
T ss_conf 985999999986998----99989899999999999987
No 82
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=95.47 E-value=0.1 Score=29.33 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC----------CCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 09998999999999889899991887764548889727----------99899971688539994579999999999997
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI----------PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN 908 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l----------~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~ 908 (963)
++......+.+.|++.|+...+.-+.+|...+.+|++. .+|.|=+|-.+ - +-+.-.+++.|-+...-
T Consensus 14 D~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlvllD~~m-P--~~dG~el~~~ir~~~~~ 90 (149)
T 1k66_A 14 DSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL-P--GTDGREVLQEIKQDEVL 90 (149)
T ss_dssp CCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC-S--SSCHHHHHHHHTTSTTG
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC-C--CCCHHHHHHHHHHCCCC
T ss_conf 99999999999999869972799989999999999850111111226899989980889-9--99858999999858666
Q ss_pred CCCEE-EEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 79809-997039989999899809989940520689998999999985
Q gi|254780468|r 909 IETTI-IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 909 lgi~v-iAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-++.| +-.+-.+.++.....+.|++. |+.||...+++.+.+++
T Consensus 91 ~~iPvI~lT~~~~~~~~~~~~~~Ga~~----yl~KP~~~~~L~~~i~~ 134 (149)
T 1k66_A 91 KKIPVVIMTTSSNPKDIEICYSYSISS----YIVKPLEIDRLTETVQT 134 (149)
T ss_dssp GGSCEEEEESCCCHHHHHHHHHTTCSE----EEECCSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 999589997899999999999879979----99798999999999999
No 83
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=95.40 E-value=0.087 Score=29.97 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH------HCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 099989999999998898999918877645488897------27998999716885399945799999999999977980
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG------YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~------~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~ 912 (963)
+|+.....+.+.|++.|....++-..+|...+.+|. ..++|.|=+|-.+ .+ -+.-.+++.|-.....-++.
T Consensus 15 D~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~dliilD~~m-P~--~~G~el~~~ir~~~~~~~ip 91 (143)
T 2qvg_A 15 DDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI-PK--MNGIEFLKELRDDSSFTDIE 91 (143)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC-TT--SCHHHHHHHHTTSGGGTTCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCC-CC--CCCHHHHHHHHHCCCCCCCE
T ss_conf 9999999999999976998499998999999999984123303798789964878-89--97279999998577779991
Q ss_pred EE-EEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99-97039989999899809989940520689998999999985
Q gi|254780468|r 913 II-AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 913 vi-AegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
+| ..+-.+.+......++|++. |+.||+..+++++.+..
T Consensus 92 iI~lS~~~~~~~~~~a~~~G~~~----~l~KPv~~~~ll~~~~~ 131 (143)
T 2qvg_A 92 VFVLTAAYTSKDKLAFESLNIRG----HLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp EEEEESCCCHHHHHHHTTTTCCE----EEESSCCHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 99997889999999999879989----99897999999999999
No 84
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=95.37 E-value=0.14 Score=28.34 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
++..........|+..|+++-. ..+|-..+..+.+-++|.|=+|-.+ . +-+.-.+++.+-...+ ++.+|. .+
T Consensus 11 D~~~~~~~l~~~L~~~g~~v~~--a~~g~eal~~~~~~~~dliilD~~m-P--~~~G~el~~~ir~~~~--~~pii~lt~ 83 (124)
T 1srr_A 11 DQSGIRILLNEVFNKEGYQTFQ--AANGLQALDIVTKERPDLVLLDMKI-P--GMDGIEILKRMKVIDE--NIRVIIMTA 83 (124)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEE--ESSHHHHHHHHHHHCCSEEEEESCC-T--TCCHHHHHHHHHHHCT--TCEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-C--CCCHHHHHHHHHHHCC--CCCEEEEEC
T ss_conf 9999999999999986998999--5998999999980799889985369-9--9988999999996099--998999988
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 39989999899809989940520689998999999985161102
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~~~ 961 (963)
-.+.+......+.|++. |+.||...+++...+++..+...
T Consensus 84 ~~~~~~~~~a~~~Ga~~----~l~KP~~~~~L~~~i~~~L~~~~ 123 (124)
T 1srr_A 84 YGELDMIQESKELGALT----HFAKPFDIDEIRDAVKKYLPLKS 123 (124)
T ss_dssp SCCHHHHHHHHHHTCCC----EEESSCCHHHHHHHHHHHSCC--
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHHHHCC
T ss_conf 89999999999879989----99898999999999999987567
No 85
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684}
Probab=95.34 E-value=0.14 Score=28.37 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
++..........|++.|+.+-. +.+|-..+..+.+-++|.|=+|-.+ .++ +.-.+++.|-+....-++.+| ..+
T Consensus 16 D~~~~~~~l~~~L~~~G~~v~~--a~~g~eAl~~~~~~~pdliilD~~m-P~~--dG~el~~~ir~~~~~~~iPiI~lS~ 90 (147)
T 2zay_A 16 TQLPALAASISALSQEGFDIIQ--CGNAIEAVPVAVKTHPHLIITEANM-PKI--SGMDLFNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp TTGGGGHHHHHHHHHHTEEEEE--ESSHHHHHHHHHHHCCSEEEEESCC-SSS--CHHHHHHHHHTSTTTTTSCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCC-CCC--CCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 9999999999999987999999--8999999999983799999985999-999--7518999998485568971899726
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.++.....+.|++- |+.||...+++..-+++.
T Consensus 91 ~~~~~~~~~~~~~Ga~d----yl~KP~~~~~L~~~i~~~ 125 (147)
T 2zay_A 91 RATAKEEAQLLDMGFID----FIAKPVNAIRLSARIKRV 125 (147)
T ss_dssp SCCHHHHHHHHHHTCSE----EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 89999999999879988----997999999999999999
No 86
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=95.27 E-value=0.15 Score=28.12 Aligned_cols=108 Identities=9% Similarity=0.112 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999703
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegV 918 (963)
+|........+.|+..|+.+.. +.+|...+..+.+.++|.|=+|-.+ .++ +.-.+++.+-+....-...++...-
T Consensus 14 Dd~~~~~~l~~~L~~~g~~v~~--a~~g~eal~~l~~~~pdlillD~~m-P~~--dG~el~~~ir~~~~~~~~~Iil~s~ 88 (132)
T 3lte_A 14 DDQAMAAAIERVLKRDHWQVEI--AHNGFDAGIKLSTFEPAIMTLDLSM-PKL--DGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHHTCCSEEEEESCB-TTB--CHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 9999999999999988999999--8899999999974799999996898-788--8999999998458889891899955
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 9989999899809989940520689998999999985
Q gi|254780468|r 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 919 E~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
.+.+......+.|++. |+.||...+++...+++
T Consensus 89 ~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~ 121 (132)
T 3lte_A 89 LDKAKLQQAVTEGADD----YLEKPFDNDALLDRIHD 121 (132)
T ss_dssp SCSHHHHHHHHHTCCE----EECSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 9999999999879989----99898999999999999
No 87
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT}
Probab=95.20 E-value=0.078 Score=30.32 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
+|......+...|+..|+++.. ..+|-..+..+++-++|.|=+|-.+ .+ -+.-.+++.+-.....-++.+|+ .+
T Consensus 11 D~~~~~~~l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~dlillD~~m-P~--~~G~el~~~lr~~~~~~~~pii~lt~ 85 (127)
T 3i42_A 11 DYQAAAETFKELLEMLGFQADY--VMSGTDALHAMSTRGYDAVFIDLNL-PD--TSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp SCHHHHHHHHHHHHHTTEEEEE--ESSHHHHHHHHHHSCCSEEEEESBC-SS--SBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEECCCC-CC--CCHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 7899999999999987999999--8999999999980899999862789-99--84599999998476789994999978
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-...+......+ |++ + |+.||...+++.+.+++-
T Consensus 86 ~~~~~~~~~~~~-g~~---~-~L~KP~~~~~L~~~l~~l 119 (127)
T 3i42_A 86 FAKNDLGKEACE-LFD---F-YLEKPIDIASLEPILQSI 119 (127)
T ss_dssp C-CTTCCHHHHH-HCS---E-EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-CCC---E-EEECCCCHHHHHHHHHHH
T ss_conf 887999999971-787---8-997989999999999980
No 88
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=95.12 E-value=0.16 Score=27.78 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
+++.....+.+.|++.|+.+.. +.+|-..+..+.+-++|.|=+|-.+ .++ +.-.+++.+-+....-++.+|. .+
T Consensus 15 Dd~~~~~~l~~~L~~~G~~v~~--a~~~~~al~~l~~~~~DlillD~~m-P~~--dG~el~~~ir~~~~~~~iPiI~lTa 89 (154)
T 3gt7_A 15 DSPTQAEHLKHILEETGYQTEH--VRNGREAVRFLSLTRPDLIISDVLM-PEM--DGYALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEE--ESSHHHHHHHHTTCCCSEEEEESCC-SSS--CHHHHHHHHHHSTTTTTSCEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9999999999999987999999--8999999999983899999980899-999--8879999998584557995999982
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 39989999899809989940520689998999999985161
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~ 958 (963)
-.+.+......+.|++.+ +.||...+++...++....
T Consensus 90 ~~~~~~~~~a~~~Ga~dy----l~KP~~~~~L~~~i~~~l~ 126 (154)
T 3gt7_A 90 LSDPRDVVRSLECGADDF----ITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp CCSHHHHHHHHHHCCSEE----EESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEE----EECCCCHHHHHHHHHHHHH
T ss_conf 699999999997798879----9798999999999999999
No 89
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=94.69 E-value=0.2 Score=26.97 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
++......+...|++.|+++.. +.+|-..+..+.+-++|.|=+|- . .+.+.-.+++.+-+... ++.||. .+
T Consensus 12 D~~~~~~~l~~~L~~~G~~v~~--a~~g~eal~~l~~~~~dlvllD~--m--p~~dGl~l~~~ir~~~~--~~piI~lT~ 83 (142)
T 2qxy_A 12 ESRITFLAVKNALEKDGFNVIW--AKNEQEAFTFLRREKIDLVFVDV--F--EGEESLNLIRRIREEFP--DTKVAVLSA 83 (142)
T ss_dssp SCHHHHHHHHHHHGGGTCEEEE--ESSHHHHHHHHTTSCCSEEEEEC--T--TTHHHHHHHHHHHHHCT--TCEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECC--C--CCHHHHHHHHHHHHHCC--CCCEEEEEC
T ss_conf 9899999999999987999999--89999999999857999998547--8--63128999999998689--997899973
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3998999989980998994052068999899999998516
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
-.+.+......+.|++ .|+.||...+++...+++..
T Consensus 84 ~~~~~~~~~a~~~Ga~----dyl~KP~~~~~L~~~i~~~l 119 (142)
T 2qxy_A 84 YVDKDLIINSVKAGAV----DYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp CCCHHHHHHHHHHTCS----CEEESSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHHHH
T ss_conf 5888999999976897----89979899999999999998
No 90
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=94.58 E-value=0.15 Score=28.14 Aligned_cols=110 Identities=15% Similarity=-0.006 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999703
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegV 918 (963)
+|....+..++.+-+.|+.+. -..+|...+..++.-++|.|=+|-.+ .++ +.-.+++.+-+....-++.+|.---
T Consensus 11 DD~~~~r~~l~~~L~~~~~v~--~a~~g~eal~~l~~~~pdliilD~~m-P~~--dG~el~~~ir~~~~~~~iPiI~lT~ 85 (133)
T 3nhm_A 11 ENSWTMRETLRLLLSGEFDCT--TAADGASGLQQALAHPPDVLISDVNM-DGM--DGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp CSCHHHHHHHHHHHTTTSEEE--EESSHHHHHHHHHHSCCSEEEECSSC-SSS--CHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred ECCHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEECCCC-CCC--CHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 498999999999997899899--98999999999984799999975999-999--9999999998288889987899707
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 998999989980998994052068999899999998516
Q gi|254780468|r 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 919 E~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
.+++......+.|++. |+.||...+++..-+++..
T Consensus 86 ~~~~~~~~a~~~ga~~----yl~KP~~~~~L~~~i~~~l 120 (133)
T 3nhm_A 86 YAPRTEGPADQPVPDA----YLVKPVKPPVLIAQLHALL 120 (133)
T ss_dssp CCC-----TTSCCCSE----EEESSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 8849999998779978----9989999999999999999
No 91
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=94.48 E-value=0.23 Score=26.60 Aligned_cols=107 Identities=12% Similarity=0.204 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980-99970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAeg 917 (963)
++......+-..|++.|+.+. ....+|-..+..+++.++|.|=+|-.+ . +-+.-.+++.+-.... +++ ++..+
T Consensus 10 D~~~~r~~l~~~L~~~g~~v~-~~a~~g~~al~~~~~~~~dlii~D~~m-P--~~~G~e~~~~ir~~~~--~~~ii~lt~ 83 (120)
T 1tmy_A 10 DAAFMRMMLKDIITKAGYEVA-GEATNGREAVEKYKELKPDIVTMDITM-P--EMNGIDAIKEIMKIDP--NAKIIVCSA 83 (120)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHHHCCSEEEEECSC-G--GGCHHHHHHHHHHHCT--TCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHCCCCEEEEECCC-C--CCCHHHHHHHHHHHCC--CCCEEEEEC
T ss_conf 999999999999998799899-998999999999983699999996368-9--9979999999997587--997899974
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++ | |+.||...+++...+++
T Consensus 84 ~~~~~~~~~a~~~Ga~---~-yl~KP~~~~~L~~~l~~ 117 (120)
T 1tmy_A 84 MGQQAMVIEAIKAGAK---D-FIVKPFQPSRVVEALNK 117 (120)
T ss_dssp TTCHHHHHHHHHTTCC---E-EEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCC---E-EEECCCCHHHHHHHHHH
T ss_conf 2899999999986998---9-99798999999999999
No 92
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583}
Probab=94.05 E-value=0.079 Score=30.30 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q ss_conf 99899999999988989999
Q gi|254780468|r 841 PERSRLLLGRLRKIGISLTL 860 (963)
Q Consensus 841 ~~~~~~~~~~l~~~G~~ial 860 (963)
.+...+.-+.+|+.|++++-
T Consensus 157 ~~~f~~~n~~~k~~gi~t~A 176 (372)
T 2p0o_A 157 TTFFNEKNRWLKELGLQVFT 176 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999977996899
No 93
>3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=93.90 E-value=0.29 Score=25.75 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
++..........|+..|+.+ +-..+|-..+..+.+-++|.|=+|-.+ . +-+.-.+++.+-+. .-++.+| -.|
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v--~~a~~~~~al~~l~~~~~dlvllD~~m-p--~~~G~el~~~lr~~--~~~~piI~lT~ 83 (132)
T 3crn_A 11 DDTAILDSTKQILEFEGYEV--EIAATAGEGLAKIENEFFNLALFXIKL-P--DMEGTELLEKAHKL--RPGMKKIMVTG 83 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCEE--EEESSHHHHHHHHHHSCCSEEEECSBC-S--SSBHHHHHHHHHHH--CTTSEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEE--EECCCHHHHHHHHHHCCCCEEEECCCC-C--CCHHHHHHHHHHHH--CCCCCEEEEEC
T ss_conf 99999999999999869979--970999999999985799999970448-9--96089999999984--89998999976
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3998999989980998994052068999899999998516
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
-.+.++.....+.|++. |+.||...+++...+++..
T Consensus 84 ~~~~~~~~~a~~~Ga~~----yl~KP~~~~~L~~~i~~~L 119 (132)
T 3crn_A 84 YASLENSVFSLNAGADA----YIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp CCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 59999999999879989----9989799999999999999
No 94
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=93.81 E-value=0.18 Score=27.33 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=64.1
Q ss_pred CCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCE-E-EEEECCCEEECCCCC----CCHHHHHHHHH
Q ss_conf 89848999997678579888427788999999999999983489976-9-998064102025566----99899999876
Q gi|254780468|r 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-L-ARLSGNRFGIILISE----NNSLKIADFAI 635 (963)
Q Consensus 562 ~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~-l-aR~~gdeFaill~~~----~~~~~~~~~~~ 635 (963)
++...++++.||.+|..+-++++....-.+|..+.+.+.+.+...+. . -++.||.+.++.... +....+..++.
T Consensus 6 e~~~vtvlF~Di~gft~l~e~~~~~~~~~~l~~~~~~~~~~i~~~gG~~~ik~~GD~~~~~fg~~~~~~~~~~~a~~~a~ 85 (190)
T 3et6_A 6 EHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVLLEFAL 85 (190)
T ss_dssp EEEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 57989999998588369888699999999999999998778774277278877444467731688761778998888888
Q ss_pred HHHHHHHCEEEEC--CEEEEEEEEEEEEE
Q ss_conf 5554310115525--46799999987764
Q gi|254780468|r 636 AMRKSIAMPINLL--EREITVTASIGFAS 662 (963)
Q Consensus 636 ~~~~~~~~~~~~~--~~~i~~t~siGi~~ 662 (963)
.+.+......... ...+.+.++.|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~rigi~~G~v~ 114 (190)
T 3et6_A 86 RMHEEASRVASSLGEPVRIRVGMHSGPVV 114 (190)
T ss_dssp HHHHHHHTSCCC---CCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEEEE
T ss_conf 89998998864149971388732257899
No 95
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.76 E-value=0.31 Score=25.56 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980-99970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAeg 917 (963)
+++.....+.+.|++.|+++. -+.+|-..+..+.+-++|.|=+|-.+ -+.+.-.+++.+-+. ..++. ++..+
T Consensus 12 Dd~~~~~~l~~~L~~~g~~v~--~a~~~~eal~~l~~~~pdlillD~~m---p~~~G~~l~~~ir~~--~~~~piI~lt~ 84 (137)
T 3cfy_A 12 DSTSLAILYKQYVKDEPYDIF--HVETGRDAIQFIERSKPQLIILDLKL---PDMSGEDVLDWINQN--DIPTSVIIATA 84 (137)
T ss_dssp SCTTHHHHHHHHTTTSSSEEE--EESSHHHHHHHHHHHCCSEEEECSBC---SSSBHHHHHHHHHHT--TCCCEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEECCC---CCCCHHHHHHHHHHH--CCCCCEEEEEC
T ss_conf 999999999999998799999--98999999999984799999983899---999889999999974--89984899987
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++. |+.||...+++...++.
T Consensus 85 ~~~~~~~~~~~~~Ga~d----yl~KP~~~~~L~~~i~~ 118 (137)
T 3cfy_A 85 HGSVDLAVNLIQKGAED----FLEKPINADRLKTSVAL 118 (137)
T ss_dssp SCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 79999999998679868----99898999999999999
No 96
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=93.69 E-value=0.31 Score=25.47 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980-99970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAeg 917 (963)
+++.....+...|+..|+++. -+.+|...+..+..-++|.|=+|-. --+-+.-.+++.+-.... ++. ++..|
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v~--~a~~~~~al~~l~~~~~dliilD~~---mP~~dGle~~~~ir~~~~--~~pvI~lT~ 83 (155)
T 1qkk_A 11 DDRDLRKAMQQTLELAGFTVS--SFASATEALAGLSADFAGIVISDIR---MPGMDGLALFRKILALDP--DLPMILVTG 83 (155)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE--EESCHHHHHHTCCTTCCSEEEEESC---CSSSCHHHHHHHHHHHCT--TSCEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHCCCCCEEECCCC---CCCCCHHHHHHHHHHHCC--CCCEEEEEC
T ss_conf 999999999999998799899--9789999999853269877765457---899989999999997298--994898979
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++. |+.||...+++...+++
T Consensus 84 ~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~ 117 (155)
T 1qkk_A 84 HGDIPMAVQAIQDGAYD----FIAKPFAADRLVQSARR 117 (155)
T ss_dssp GGGHHHHHHHHHTTCCE----EEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 89999999999869988----97599999999999999
No 97
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=93.50 E-value=0.33 Score=25.24 Aligned_cols=103 Identities=11% Similarity=0.061 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEC-C
Q ss_conf 98999999999889899991887764548889727998999716885399945799999999999977980-999703-9
Q gi|254780468|r 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKDI-Y 919 (963)
Q Consensus 842 ~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAegV-E 919 (963)
......++.+-+.|+.+.. +.+|-..+..+.+-++|.|=+|-.+ .+ -+.-.+++.+-+. .-++. ++..|- +
T Consensus 11 ~~~~~~l~~~L~~g~~v~~--a~~~~~al~~~~~~~~dlvl~D~~m-P~--~~G~ell~~ir~~--~~~~~vI~lt~~~~ 83 (139)
T 2jk1_A 11 PHSLAAMKLALEDDFDVLT--AQGAEAAIAILEEEWVQVIICDQRM-PG--RTGVDFLTEVRER--WPETVRIIITGYTD 83 (139)
T ss_dssp HHHHHHHHHHHTTTSCEEE--ESSHHHHHHHHHHSCEEEEEEESCC-SS--SCHHHHHHHHHHH--CTTSEEEEEESCTT
T ss_pred HHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CC--CCHHHHHHHHHHH--CCCCCEEEEECCCC
T ss_conf 9999999999987999999--8999999999972899999985567-89--8559999999981--89995899989799
Q ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 989999899809989940520689998999999985
Q gi|254780468|r 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 920 ~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
.+...+.+++.|++. |+.||...+++..-+++
T Consensus 84 ~~~~~~a~~~~Ga~d----yl~KP~~~~~L~~~v~~ 115 (139)
T 2jk1_A 84 SASMMAAINDAGIHQ----FLTKPWHPEQLLSSARN 115 (139)
T ss_dssp CHHHHHHHHHTTCCE----EEESSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 899999999859980----89899999999999999
No 98
>3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=93.27 E-value=0.098 Score=29.53 Aligned_cols=111 Identities=7% Similarity=-0.055 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
++........+.|++.|+++-. +.+|-..+..+++-++|.|=+|-.+ . +.+.-.+++.|-.....-++.+|. .+
T Consensus 15 D~~~~r~~l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~dliilD~~m-P--~~~G~el~~~ir~~~~~~~ipiI~lT~ 89 (142)
T 3cg4_A 15 DDAHVRIAVKTILSDAGFHIIS--ADSGGQCIDLLKKGFSGVVLLDIMM-P--GMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHTCCCEEEEEESCC-S--SSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-C--CCCHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9899999999999987999999--8999999999971799999983899-9--986899999998575568995999978
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 39989999899809989940520689998999999985161
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~ 958 (963)
-.+.+......+.|++- |+.||...+++.+.++....
T Consensus 90 ~~~~~~~~~a~~~G~~d----yl~KP~~~~~Ll~~v~~~l~ 126 (142)
T 3cg4_A 90 KNAPDAKMIGLQEYVVD----YITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TTCCCCSSTTGGGGEEE----EEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHHH
T ss_conf 89999999999869988----99898999999999999999
No 99
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=93.23 E-value=0.37 Score=24.94 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHH--CCCEEEE-
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997--7980999-
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN--IETTIIA- 915 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~--lgi~viA- 915 (963)
+|......+.+.|+..|+.+.. +.+|-..+..+.+-++|.|=+|-.+ . +-+.-.+++.|-..-.. .++.+|+
T Consensus 22 D~~~~r~~l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~dlii~D~~m-p--~~~G~el~~~ir~~~~~~~~~~pii~l 96 (143)
T 3m6m_D 22 DHEANRMVLQRLLEKAGHKVLC--VNGAEQVLDAMAEEDYDAVIVDLHM-P--GMNGLDMLKQLRVMQASGMRYTPVVVL 96 (143)
T ss_dssp SSHHHHHHHHHHHHC--CEEEE--ESSHHHHHHHHHHSCCSEEEEESCC-S--SSCHHHHHHHHHHHHHTTCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEEECCC-C--CCCHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 8899999999999987999999--8999999999752899999983888-9--998899999998628433589939999
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 703998999989980998994052068999899999998516
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
.+-.+.+......+.|++. |+.||...+++.+.+++-.
T Consensus 97 t~~~~~~~~~~~~~~G~~~----~l~KP~~~~~L~~~l~~l~ 134 (143)
T 3m6m_D 97 SADVTPEAIRACEQAGARA----FLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp ESCCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 7889999999999869988----9979899999999999999
No 100
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=93.14 E-value=0.38 Score=24.84 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHC---CCEEE-
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977---98099-
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNI---ETTII- 914 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~l---gi~vi- 914 (963)
+|+....-..+.|+..|+++.. ..+|...+..+++ ++|.|=+|-.+ -++ +...+++.|-+..... ...+|
T Consensus 15 D~~~~~~~l~~~L~~~g~~v~~--a~~g~eAl~~l~~-~~dlii~D~~m-P~~--dG~e~~~~ir~~~~~~~~~~~~ii~ 88 (136)
T 1dcf_A 15 ENGVSRMVTKGLLVHLGCEVTT--VSSNEECLRVVSH-EHKVVFMDVCM-PGV--ENYQIALRIHEKFTKQRHQRPLLVA 88 (136)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHCCT-TCSEEEEECCS-STT--TTTHHHHHHHHHHC-CCSCCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHCC-CCCEEEEECCC-CCC--CHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 9899999999999987999999--8999999986245-99899994568-997--4899999999845012689886999
Q ss_pred EEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9703998999989980998994052068999899999998516
Q gi|254780468|r 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 915 AegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
..+-.++++.....+.|+|. |+.||+..+++.+.+.+-.
T Consensus 89 ~Ta~~~~~~~~~~~~~G~~~----~l~KP~~~~~L~~~l~~~l 127 (136)
T 1dcf_A 89 LSGNTDKSTKEKCMSFGLDG----VLLKPVSLDNIRDVLSDLL 127 (136)
T ss_dssp EESCCSHHHHHHHHHTTCCE----EEESSCCHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 96899999999999869998----9989899999999999996
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=93.08 E-value=0.35 Score=25.08 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
++........+.|...|+++ +-+.+|-..+..+++.++|.|=+|..+- +.+.-.+++.+-+....-++.+|. .+
T Consensus 9 d~~~~~~~~~~~L~~~g~~v--~~a~~~~~al~~l~~~~pdlvllD~~lp---~~~G~~l~~~lr~~~~~~~~pii~~t~ 83 (119)
T 2j48_A 9 EEDEAATVVCEMLTAAGFKV--IWLVDGSTALDQLDLLQPIVILMAWPPP---DQSCLLLLQHLREHQADPHPPLVLFLG 83 (119)
T ss_dssp CCHHHHHHHHHHHHHTTCEE--EEESCHHHHHHHHHHHCCSEEEEECSTT---CCTHHHHHHHHHHTCCCSSCCCEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCEEEEECCCC---CCCHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 99999999999999889999--9989999999999817999899963799---999999999998288889864999977
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 39989999899809989940520689998999999985161
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~ 958 (963)
-++.+ ...+.|++ + |+.||...+++...+++-.+
T Consensus 84 ~~~~~---~~~~~ga~---~-~l~KP~~~~~L~~~v~~ll~ 117 (119)
T 2j48_A 84 EPPVD---PLLTAQAS---A-ILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SCCSS---HHHHHHCS---E-ECSSCSTTHHHHHHHHTTCC
T ss_pred CHHHH---HHHHCCCC---E-EEECCCCHHHHHHHHHHHCC
T ss_conf 18899---99987998---9-99898999999999998839
No 102
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis, hydrolase; 1.91A {Thermoanaerobacter tengcongensis MB4}
Probab=93.04 E-value=0.39 Score=24.73 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=93.1
Q ss_pred EEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHH
Q ss_conf 99997697794391489999999988199954699997133775099989999999998--8989999188776454888
Q gi|254780468|r 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK--IGISLTLDDFGTKCSLLSY 872 (963)
Q Consensus 795 ~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~--~G~~ialDdFG~g~ssl~~ 872 (963)
.+.+.+.......+...+.+.+.+++++.. +++.+.-- +.+. +..+++ -++++++.-...-.+....
T Consensus 115 ~~~~~~k~~~~~~~~~~~~v~~~l~~~~~~-~~vi~~sf------~~~~----l~~~~~~~p~~~~~~~~~~~~~~~~~~ 183 (252)
T 2pz0_A 115 LVNIEIKSGIVLYPGIEEKLIKAIKEYNFE-ERVIISSF------NHYS----LRDVKKMAPHLKIGLLYQCGLVEPWHM 183 (252)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHHHTTCT-TTEEEEES------BHHH----HHHHHHHCTTSEEEEEECSBCSSTHHH
T ss_pred HHHEECCCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEEC------CHHH----HHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 000002578555724899999999972998-87899958------9899----999998588852899841566653555
Q ss_pred HHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH
Q ss_conf 97279989997168853999457999999999999779809997039989999899809989940520689998999999
Q gi|254780468|r 873 LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 (963)
Q Consensus 873 L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~ 952 (963)
......+.+-++..... ..+++.+|+.|++|.+=.|.++++++.+.++|+|.+.=.+ ++.+.++
T Consensus 184 ~~~~~~~~i~~~~~~~~----------~~~i~~~~~~g~~v~~wTvn~~~~~~~l~~~GvdgI~TD~------P~~l~~~ 247 (252)
T 2pz0_A 184 ALRMEAYSLHPFYFNII----------PELVEGCKKNGVKLFPWTVDRKEDMERMIKAGVDGIITDD------PETLINL 247 (252)
T ss_dssp HHHTTCSEEEEBGGGCC----------HHHHHHHHHTTCEECCBCCCSHHHHHHHHHHTCSEEEESC------HHHHHHH
T ss_pred HHCCCCCEECCCHHCCC----------HHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEECC------HHHHHHH
T ss_conf 43035412132030046----------9999999987999999808999999999985999999794------9999999
Q ss_pred HHHH
Q ss_conf 9851
Q gi|254780468|r 953 LKER 956 (963)
Q Consensus 953 l~~~ 956 (963)
++++
T Consensus 248 l~~~ 251 (252)
T 2pz0_A 248 VRKG 251 (252)
T ss_dssp HC--
T ss_pred HHHC
T ss_conf 9856
No 103
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=92.88 E-value=0.41 Score=24.56 Aligned_cols=99 Identities=11% Similarity=0.102 Sum_probs=62.5
Q ss_pred CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCEEECCCCCC----CHHHHHHHHHHHHH
Q ss_conf 4899999767857988842778899999999999998348-997699980641020255669----98999998765554
Q gi|254780468|r 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISEN----NSLKIADFAIAMRK 639 (963)
Q Consensus 565 ~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~-~~~~laR~~gdeFaill~~~~----~~~~~~~~~~~~~~ 639 (963)
..++++.||.+|..+-++++.+..-.+|..+-..+.+.+. .+..+.++.||.+.+...... ....+..++..+..
T Consensus 34 ~vtVlF~Di~gfT~lse~~~~~~~~~~L~~~~~~~~~~i~~~gG~i~k~~GD~~m~~f~~~~~~~~~~~~a~~~al~~~~ 113 (220)
T 1azs_A 34 NVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIE 113 (220)
T ss_dssp EEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 78999987487489988599999999999999999999996698899975714567618987752699999987999999
Q ss_pred HHHCEE--EECCEEEEEEEEEEEEEC
Q ss_conf 310115--525467999999877645
Q gi|254780468|r 640 SIAMPI--NLLEREITVTASIGFASW 663 (963)
Q Consensus 640 ~~~~~~--~~~~~~i~~t~siGi~~~ 663 (963)
.....- ......+.+++..|-+..
T Consensus 114 ~~~~~~~~~~~~l~~riGIh~G~v~~ 139 (220)
T 1azs_A 114 AISLVREMTGVNVNMRVGIHSGRVHC 139 (220)
T ss_dssp HHHHHHHHHCSCCEEEEEEEEEEEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEE
T ss_conf 99986530288743356665388157
No 104
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus}
Probab=92.82 E-value=0.41 Score=24.50 Aligned_cols=110 Identities=9% Similarity=0.102 Sum_probs=76.7
Q ss_pred CCHHHHHH-HHHHHHHCC-CEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-
Q ss_conf 09998999-999999889-899991887764548889727998999716885399945799999999999977980999-
Q gi|254780468|r 839 GNPERSRL-LLGRLRKIG-ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA- 915 (963)
Q Consensus 839 ~~~~~~~~-~~~~l~~~G-~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA- 915 (963)
+|....+. +...|+..| +.+ +..+.+|-..+..+.+.+||.|=+|-.+ . +-+.-.+++.+-.. .-++++|.
T Consensus 10 DD~~~~r~~l~~~L~~~~~~~v-v~~a~~g~eal~~~~~~~pDlvllDi~m-P--~~~G~e~~~~ir~~--~~~~~vI~l 83 (133)
T 3b2n_A 10 EDQNMLRQAMVQLIKLHGDFEI-LADTDNGLDAMKLIEEYNPNVVILDIEM-P--GMTGLEVLAEIRKK--HLNIKVIIV 83 (133)
T ss_dssp CSCHHHHHHHHHHHHHHSSEEE-EEEESCHHHHHHHHHHHCCSEEEECSSC-S--SSCHHHHHHHHHHT--TCSCEEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCEEE-EEEECCHHHHHHHHHHCCCCEEEEECCC-C--CCCHHHHHHHHHHH--CCCCCEEEE
T ss_conf 2999999999999986899699-9998999999999985699999995778-9--99889999999986--899968999
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 7039989999899809989940520689998999999985161
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~ 958 (963)
.+-.+.+......+.|++ | |+.||.+.+++.+-+++-..
T Consensus 84 T~~~~~~~~~~a~~~Ga~---~-yl~Kp~~~~~L~~~I~~v~~ 122 (133)
T 3b2n_A 84 TTFKRPGYFEKAVVNDVD---A-YVLKERSIEELVETINKVNN 122 (133)
T ss_dssp ESCCCHHHHHHHHHTTCS---E-EEETTSCHHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHCCCC---E-EEECCCCHHHHHHHHHHHHH
T ss_conf 678999999999987997---8-99799999999999999997
No 105
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=92.79 E-value=0.42 Score=24.48 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
++..........|+..|+++. -+.+|-..+..+.+-++|.|=+|-.+ . +-+.-.+++.+-+. .-++.+| ..|
T Consensus 11 Dd~~~r~~l~~~L~~~g~~v~--~a~~~~~al~~~~~~~~dlvi~D~~m-P--~~~G~~ll~~ir~~--~~~~pvI~lT~ 83 (126)
T 1dbw_A 11 DEEPVRKSLAFMLTMNGFAVK--MHQSAEAFLAFAPDVRNGVLVTDLRM-P--DMSGVELLRNLGDL--KINIPSIVITG 83 (126)
T ss_dssp SSHHHHHHHHHHHHHTTCEEE--EESCHHHHHHHGGGCCSEEEEEECCS-T--TSCHHHHHHHHHHT--TCCCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEECCCCC-C--CCCCHHHHHHHHHH--CCCCEEEEEEC
T ss_conf 999999999999998799999--98999999999763799879710368-8--88829999999961--99983999968
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++. |+.||...+++...+++
T Consensus 84 ~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~ 117 (126)
T 1dbw_A 84 HGDVPMAVEAMKAGAVD----FIEKPFEDTVIIEAIER 117 (126)
T ss_dssp TTCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 89999999999879988----99896999999999999
No 106
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=92.70 E-value=0.43 Score=24.38 Aligned_cols=132 Identities=11% Similarity=0.136 Sum_probs=93.0
Q ss_pred EEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEE------EEE-HH--HHHCCHHHHHHHHHHHHHCCCEEEEECC-CC
Q ss_conf 99976977943914899999999881999546999------971-33--7750999899999999988989999188-77
Q gi|254780468|r 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKL------SFS-ES--VVMGNPERSRLLLGRLRKIGISLTLDDF-GT 865 (963)
Q Consensus 796 vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~l------Eit-E~--~~~~~~~~~~~~~~~l~~~G~~ialDdF-G~ 865 (963)
+++-.++ .++|++-..+ +.|.+.|| |+| |. .+..+.+.....+++|++.|++++| | -.
T Consensus 97 lNlE~a~----~~e~i~ia~~------~kP~qvtLVPE~r~elTTegGlDv~~~~~~L~~~i~~Lk~~gIrVSL--FIDP 164 (278)
T 3gk0_A 97 MNLECAV----TPEMLDIACE------IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSL--FIDP 164 (278)
T ss_dssp EEEEECS----SHHHHHHHHH------HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEE--EECS
T ss_pred CCCCCCC----CHHHHHHHHH------CCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEE--EECC
T ss_conf 5778887----0999999996------69987998888855545557662062599999999999974981799--8369
Q ss_pred CHHHHHHHHHCCCCEEEEE-HHHHCCCCHHH--HH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCC
Q ss_conf 6454888972799899971-68853999457--99--9999999999779809997039989999899809989940520
Q gi|254780468|r 866 KCSLLSYLGYIPFDTVKFN-GSLMTGSTEKR--IA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 (963)
Q Consensus 866 g~ssl~~L~~l~~d~iKiD-~sfv~~~~~~~--~~--~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~ 940 (963)
....+.+.+++.+|.|-|. +.|-...+.++ .. -++...+.|+++|+.|=|=.==|.+.+..+.+ +..+.=.=+
T Consensus 165 d~~qi~~A~~~Gad~IELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~--ip~i~EvnI 242 (278)
T 3gk0_A 165 DEAQIRAAHETGAPVIELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVNAGHGLHYTNVQAIAA--LPGIAELNI 242 (278)
T ss_dssp CHHHHHHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTHHHHHT--CTTEEEEEE
T ss_pred CHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHC--CCCCEEEEC
T ss_conf 878999985059997997233553325432007999999999999997187574678988667899861--899769856
Q ss_pred C
Q ss_conf 6
Q gi|254780468|r 941 A 941 (963)
Q Consensus 941 ~ 941 (963)
|
T Consensus 243 G 243 (278)
T 3gk0_A 243 G 243 (278)
T ss_dssp C
T ss_pred C
T ss_conf 7
No 107
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=92.61 E-value=0.44 Score=24.30 Aligned_cols=109 Identities=14% Similarity=0.226 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999703
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegV 918 (963)
+|..........|+..|+++-. +.+|-..+..+.+-++|.|=+|-.+ . +.+.-.+++.|-...+.-++.+|+=--
T Consensus 14 D~~~~~~~l~~~L~~~G~~v~~--a~~~~eAl~~l~~~~~dlvilD~~m-P--~~dG~~l~~~ir~~~~~~~~pii~lt~ 88 (140)
T 3grc_A 14 DDPDIARLLNLMLEKGGFDSDM--VHSAAQALEQVARRPYAAMTVDLNL-P--DQDGVSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ECSHHHHHHHHHHSCCSEEEECSCC-S--SSCHHHHHHHHHTSGGGTTCEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEECCCC-C--CCCHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 9999999999999987999999--8999999999971899899853668-9--997899999998472569997899966
Q ss_pred CCH-HH-HHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 998-99-998998099899405206899989999999851
Q gi|254780468|r 919 YGE-ID-IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 919 E~~-~~-~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
.+. .+ .....+.|++. |+.||...+++...+++.
T Consensus 89 ~~~~~~~~~~a~~~G~~~----~L~KP~~~~~L~~~l~~~ 124 (140)
T 3grc_A 89 NAREGELEFNSQPLAVST----WLEKPIDENLLILSLHRA 124 (140)
T ss_dssp THHHHHHHHCCTTTCCCE----EECSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 787589999999779988----998989999999999999
No 108
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis}
Probab=92.52 E-value=0.45 Score=24.21 Aligned_cols=106 Identities=9% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
++......+-..|+..|+.+.. +.+|-..+..+..-++|.|=+|-.+ . +.+.-.+++.+-+.. -++.+| ..|
T Consensus 15 Dd~~~~~~l~~~L~~~g~~v~~--a~~~~~Al~~l~~~~~dliilD~~m-p--~~~G~~~l~~ir~~~--~~~piI~lt~ 87 (154)
T 2rjn_A 15 DEQPILNSLKRLIKRLGCNIIT--FTSPLDALEALKGTSVQLVISDMRM-P--EMGGEVFLEQVAKSY--PDIERVVISG 87 (154)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEE--ESCHHHHHHHHTTSCCSEEEEESSC-S--SSCHHHHHHHHHHHC--TTSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEECCCC-C--CCCCHHHHHHHHHHC--CCCCEEEEEC
T ss_conf 9999999999999987998999--8999999999862899889966888-8--888189999999858--8997899986
Q ss_pred CCCHHHHHHHHHCC-CCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809-989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G-~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+.....-+.| +|. |+.||...+++...+++
T Consensus 88 ~~~~~~~~~ai~~Gavd~----yL~KP~~~~~L~~~i~~ 122 (154)
T 2rjn_A 88 YADAQATIDAVNRGKISR----FLLKPWEDEDVFKVVEK 122 (154)
T ss_dssp GGGHHHHHHHHHTTCCSE----EEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCC----EEECCCCHHHHHHHHHH
T ss_conf 699999999997699987----78897999999999999
No 109
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=92.52 E-value=0.45 Score=24.21 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=91.0
Q ss_pred EEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEE------EEE-HH--HHHCCHHHHHHHHHHHHHCCCEEEEECC-C
Q ss_conf 999976977943914899999999881999546999------971-33--7750999899999999988989999188-7
Q gi|254780468|r 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKL------SFS-ES--VVMGNPERSRLLLGRLRKIGISLTLDDF-G 864 (963)
Q Consensus 795 ~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~l------Eit-E~--~~~~~~~~~~~~~~~l~~~G~~ialDdF-G 864 (963)
.+++...+ .++|++-..+ +.|.+.|| |+| |. .+..+.+..+..+++|++.|+++++ | -
T Consensus 68 ~lNlE~~~----~~e~~~ia~~------~kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~lk~~girvSL--FiD 135 (243)
T 1m5w_A 68 RMNLEMAV----TEEMLAIAVE------TKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSL--FID 135 (243)
T ss_dssp EEEEEECS----SHHHHHHHHH------HCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEE--EEC
T ss_pred HHHCCCCC----CHHHHHHHHH------CCCCEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEE--EEC
T ss_conf 54036776----4889999997------69986998158877558777563226588999999999875981699--836
Q ss_pred CCHHHHHHHHHCCCCEEEEE-HHHHCCCCHHH--HH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCC
Q ss_conf 76454888972799899971-68853999457--99--999999999977980999703998999989980998994052
Q gi|254780468|r 865 TKCSLLSYLGYIPFDTVKFN-GSLMTGSTEKR--IA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 (963)
Q Consensus 865 ~g~ssl~~L~~l~~d~iKiD-~sfv~~~~~~~--~~--~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~ 939 (963)
...+.+...+++.+|.|-|. +.|....++.+ +. -++.....|+++|+.|=|=.==|.+-+..+.+ +..+.-.-
T Consensus 136 Pd~~qi~~a~~~Gad~IElhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~--i~~i~Evn 213 (243)
T 1m5w_A 136 ADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAA--IPEMHELN 213 (243)
T ss_dssp SCHHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHT--CTTEEEEE
T ss_pred CCHHHHHHHHHCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHC--CCCCEEEE
T ss_conf 8889999998719995874010000224310257899999999999997599563699988766899844--89976984
Q ss_pred CC
Q ss_conf 06
Q gi|254780468|r 940 VA 941 (963)
Q Consensus 940 ~~ 941 (963)
+|
T Consensus 214 IG 215 (243)
T 1m5w_A 214 IG 215 (243)
T ss_dssp EC
T ss_pred CC
T ss_conf 67
No 110
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=92.36 E-value=0.47 Score=24.07 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=68.0
Q ss_pred CEEEEEEECCCHHHH-HHHCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 489999976785798-88427-7889999999999999834899769998064102025566998999998765554310
Q gi|254780468|r 565 RPTVMVIDIDKYKKI-NDVLG-IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 (963)
Q Consensus 565 ~~~l~~idid~fk~i-N~~~G-~~~gD~lL~~ia~~L~~~~~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~ 642 (963)
...++.+|++++... -+..+ +...-.+.+..++..+.+..-+.....+|||-|++.++.. +......+...+.+...
T Consensus 131 ~v~IaH~Dvnd~T~~~T~~~spydt~~~I~~ly~~l~~~~~~~g~L~Ff~GGDN~m~v~~~~-~~~~~~d~i~~i~~~~~ 209 (268)
T 2qv6_A 131 YVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPSNGM-SEEDFLDIFNRINKKYK 209 (268)
T ss_dssp CEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEECTTC-CHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCC-CHHHHHHHHHHHHHHHC
T ss_conf 45999982216521110467677999999999999999999759889972585699988997-67789999998776508
Q ss_pred CEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 1155254679999998776458988998999999999999998708
Q gi|254780468|r 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 (963)
Q Consensus 643 ~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g 688 (963)
+.+.|.||++ .++.+....|..||...+...
T Consensus 210 ---------i~LkvGIG~g------~tar~A~~~At~aLe~iR~~~ 240 (268)
T 2qv6_A 210 ---------IELKAGIGIG------RTAEDASNLADIGLEKIRGKL 240 (268)
T ss_dssp ---------CCEEEEEEEE------SSHHHHHHHHHHHHHHHHTTC
T ss_pred ---------CEEEEEECCC------CCHHHHHHHHHHHHHHHHCCC
T ss_conf ---------3289865568------888999999999999997137
No 111
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=92.18 E-value=0.49 Score=23.91 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999703
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegV 918 (963)
+|+.........|++.|+++. -+.+|-..+..+++-++|.|=+|-.+ .++ +.-.+++.+-....... -++..+-
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v~--~a~~g~~al~~l~~~~~dlvl~D~~m-P~~--~G~el~~~ir~~~~~~~-ii~lT~~ 84 (136)
T 1mvo_A 11 DEESIVTLLQYNLERSGYDVI--TASDGEEALKKAETEKPDLIVLDVML-PKL--DGIEVCKQLRQQKLMFP-ILMLTAK 84 (136)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEEESSC-SSS--CHHHHHHHHHHTTCCCC-EEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEECCCC-CCC--CHHHHHHHHHHCCCCCE-EEEEECC
T ss_conf 999999999999998899999--98999999999884599899826999-999--88999999985499985-9999787
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 9989999899809989940520689998999999985
Q gi|254780468|r 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 919 E~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
.+.+......+.|++. |+.||...+++...++.
T Consensus 85 ~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~ 117 (136)
T 1mvo_A 85 DEEFDKVLGLELGADD----YMTKPFSPREVNARVKA 117 (136)
T ss_dssp TCCCCHHHHHHTTCCE----EEESSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC----EEECCCCHHHHHHHHHH
T ss_conf 9999999999869962----78898999999999999
No 112
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=92.17 E-value=0.49 Score=23.91 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEE-EEEE
Q ss_conf 099989999999998898999918877645488897279989997168853999457999999999999779809-9970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI-IAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~v-iAeg 917 (963)
+|..........|+..|+++. -+.+|-..+..+++-++|.|=+|-.+ . +.+.-.+++.+-+.. -.+.+ +..+
T Consensus 8 Dd~~~~~~l~~~L~~~G~~v~--~a~~~~~al~~l~~~~~dlii~D~~m-p--~~dG~e~~~~lr~~~--~~~pii~lt~ 80 (121)
T 2pl1_A 8 DNALLRHHLKVQIQDAGHQVD--DAEDAKEADYYLNEHIPDIAIVDLGL-P--DEDGLSLIRRWRSND--VSLPILVLTA 80 (121)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSCC-S--SSCHHHHHHHHHHTT--CCSCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHCCCCCEEEECCCC-C--CCCCHHHHHHHHHCC--CCCCEEEEEC
T ss_conf 899999999999998799999--98999999999645899899988999-9--987478999999639--9981899978
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.|++. |+.||...+++...++..
T Consensus 81 ~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~~ 115 (121)
T 2pl1_A 81 RESWQDKVEVLSAGADD----YVTKPFHIEEVMARMQAL 115 (121)
T ss_dssp CCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 89999999999869999----997989999999999999
No 113
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis CDC1551} PDB: 1ybu_A*
Probab=92.12 E-value=0.5 Score=23.86 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=67.0
Q ss_pred CCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 848999997678579888427788999999999999983489-9769998064102025566998999998765554310
Q gi|254780468|r 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 (963)
Q Consensus 564 ~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~-~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~ 642 (963)
...++++.||.+|..+-+.++.....+++.+..+.+...+.+ +..+.++.||.+.++... +..+..++..+++...
T Consensus 16 ~~~tVlf~Di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~k~~GD~~la~f~~---~~~Av~~A~~i~~~~~ 92 (184)
T 1ybt_A 16 MLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTS---PSAAIACADDIVDAVA 92 (184)
T ss_dssp EEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESC---HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECC---HHHHHHHHHHHHHHHH
T ss_conf 6899999985272999886999999999999999987789877959998658737875022---2678999998765553
Q ss_pred CEEEECCEEEEEEEEEEEEEC
Q ss_conf 115525467999999877645
Q gi|254780468|r 643 MPINLLEREITVTASIGFASW 663 (963)
Q Consensus 643 ~~~~~~~~~i~~t~siGi~~~ 663 (963)
. .+..+.+.++.|-+..
T Consensus 93 ~----~~l~~riGih~G~v~~ 109 (184)
T 1ybt_A 93 A----LGIEVRIGIHAGEVEV 109 (184)
T ss_dssp T----TTCCEEEEEEEEEEEE
T ss_pred C----CCCCCCCCCEEEEEEE
T ss_conf 1----1753235750577998
No 114
>3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12}
Probab=92.11 E-value=0.5 Score=23.85 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=75.6
Q ss_pred CCHHHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-E
Q ss_conf 0999899999-9999889899991887764548889727998999716885399945799999999999977980999-7
Q gi|254780468|r 839 GNPERSRLLL-GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-K 916 (963)
Q Consensus 839 ~~~~~~~~~~-~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-e 916 (963)
+|....++.+ ..|.+.|+.+ +...++|...+..+.+.+||.|=+|-.+ .+ -+.-.+++.+-+. .-.+++|. .
T Consensus 8 DD~~~~r~~l~~~L~~~~~~v-v~~a~~g~~al~~~~~~~pDlvilD~~m-P~--~~G~e~~~~lr~~--~~~~~iivlS 81 (134)
T 3f6c_A 8 DDHPLAIAAIRNLLIKNDIEI-LAELTEGGSAVQRVETLKPDIVIIDVDI-PG--VNGIQVLETLRKR--QYSGIIIIVS 81 (134)
T ss_dssp CCCHHHHHHHHHHHHHTTEEE-EEEESSSTTHHHHHHHHCCSEEEEETTC-SS--SCHHHHHHHHHHT--TCCSEEEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCEE-EEEECCHHHHHHHHHCCCCCEEEEECCC-CC--CCHHHHHHHHHHH--CCCCCEEEEE
T ss_conf 698999999999998689989-9998999999999872699999995999-99--9899999999952--9998389996
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 0399899998998099899405206899989999999851
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
+-++.+......+.|++ || +.||.+.+++..-+++-
T Consensus 82 ~~~~~~~~~~a~~~Ga~---~y-l~Kp~~~~~L~~ai~~v 117 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGAN---GF-VSKKEGMNNIIAAIEAA 117 (134)
T ss_dssp CC---CTHHHHHHTTCS---EE-EEGGGCTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCC---EE-EECCCCHHHHHHHHHHH
T ss_conf 78999999999987998---99-97989999999999999
No 115
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=92.09 E-value=0.5 Score=23.83 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEE-E
Q ss_conf 099989999999998898999918877645488897279989997168853999457999999999999779809997-0
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAK-D 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAe-g 917 (963)
+|........+.|+..|+.+.. ..+|-..+..+++-++|.|-+|-.+ .++|. -.+++.|-+ +...+.+|+= +
T Consensus 137 D~~~~~~~l~~~L~~~g~~v~~--a~~g~~Al~~~~~~~~dlil~D~~m-P~mdG--~e~~~~ir~--~~~~~pii~lta 209 (254)
T 2ayx_A 137 DHPINRRLLADQLGSLGYQCKT--ANDGVDALNVLSKNHIDIVLSDVNM-PNMDG--YRLTQRIRQ--LGLTLPVIGVTA 209 (254)
T ss_dssp SSHHHHHHHHHHHHHHTSEEEE--ECCSHHHHHHHHHSCCSEEEEEESS-CSSCC--HHHHHHHHH--HHCCSCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCCCH--HHHHHHHHH--HCCCCCEEEEEC
T ss_conf 9899999999999987999999--8999999999984799899995036-89983--899999996--299997999989
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.++.....+.|++- |+.||...+++.+.++..
T Consensus 210 ~~~~~~~~~~~~~G~~~----~l~KP~~~~~L~~~l~~~ 244 (254)
T 2ayx_A 210 NALAEEKQRCLESGMDS----CLSKPVTLDVIKQTLTLY 244 (254)
T ss_dssp STTSHHHHHHHHCCCEE----EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 99999999999869989----997989999999999999
No 116
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=92.04 E-value=0.51 Score=23.79 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEE-EEEE
Q ss_conf 099989999999998898999918877645488897279989997168853999457999999999999779809-9970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI-IAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~v-iAeg 917 (963)
+|+.........|++.|+.+. -+.+|-..+..+.+-++|.|=+|-.+ .+++. -.+++. ..+.-.+.+ +..+
T Consensus 9 Dd~~~~~~l~~~L~~~g~~v~--~a~~g~~al~~l~~~~~dliilD~~m-p~~dG--~~~l~~---~~~~~~~pvi~lt~ 80 (120)
T 2a9o_A 9 DEKPISDIIKFNMTKEGYEVV--TAFNGREALEQFEAEQPDIIILDLML-PEIDG--LEVAKT---IRKTSSVPILMLSA 80 (120)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEECSSC-SSSCH--HHHHHH---HHHHCCCCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEECCCC-CCCCH--HHHHHH---HHHCCCCCEEEEEC
T ss_conf 999999999999998899999--98999999999985799899982999-99899--999999---88659981999979
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.|++ .|+.||...+++..-+++.
T Consensus 81 ~~~~~~~~~a~~~Ga~----d~l~KP~~~~~L~~~i~~~ 115 (120)
T 2a9o_A 81 KDSEFDKVIGLELGAD----DYVTKPFSNRELQARVKAL 115 (120)
T ss_dssp CCSHHHHHHHHHHTCS----EEEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHHH
T ss_conf 8999999999987998----9998989999999999999
No 117
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=92.02 E-value=0.51 Score=23.77 Aligned_cols=110 Identities=11% Similarity=0.054 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-E
Q ss_conf 09998999999999889899991887764548889727-998999716885399945799999999999977980999-7
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI-PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-K 916 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l-~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-e 916 (963)
++.......-..|.+.|+++-. ..+|-..+..+..- ++|.|=+|-.+ - +-+.-.+++.|=+....-.+.+|+ .
T Consensus 132 D~~~~~~~i~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~DlIllD~~M-P--~~dG~e~~~~iR~~~~~~~iPII~lT 206 (259)
T 3luf_A 132 DSRTSRHRTMAQLRKQLLQVHE--ASHAREALATLEQHPAIRLVLVDYYM-P--EIDGISLVRMLRERYSKQQLAIIGIS 206 (259)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEE--ESSHHHHHHHHHHCTTEEEEEECSCC-S--SSCHHHHHHHHHHHCCTTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEE--CCHHHHHHHHHHCCCCCEEEEECCCC-C--CCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 8889999999999834662453--24056899998448996599964777-6--75489999999837889999499998
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 03998999989980998994052068999899999998516
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
+-.++++.....+.|++- |+.||...+++...+++..
T Consensus 207 a~~~~~~~~~~~~~Ga~d----~l~KP~~~~eL~~~i~~~L 243 (259)
T 3luf_A 207 VSDKRGLSARYLKQGAND----FLNQPFEPEELQCRVSHNL 243 (259)
T ss_dssp CSSSSSHHHHHHHTTCSE----EEESSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 999989999999879999----9989899999999999999
No 118
>1x7f_A Outer surface protein; structural genomics, unknown function, protein structure initiative, MCSG, PSI; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=92.00 E-value=0.13 Score=28.52 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=28.2
Q ss_pred CEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEE-----EEHHHHHCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 849999769779439148999999998819995469999-----71337750999899999999988989999
Q gi|254780468|r 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS-----FSESVVMGNPERSRLLLGRLRKIGISLTL 860 (963)
Q Consensus 793 ~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lE-----itE~~~~~~~~~~~~~~~~l~~~G~~ial 860 (963)
.+.|.+|.|.. .+ .+.+ +.+++...++|.-- -++|.+ +.+...+.-+.+|+.|++++-
T Consensus 140 ~l~I~LNASt~----t~---~l~~-l~~~~~n~~~l~acHNfYPrp~TGL--s~~~f~~~N~~~k~~gi~~~A 202 (385)
T 1x7f_A 140 GLKIELNVSND----IA---YLEN-ILSHQANKSALIGCHNFYPQKFTGL--PYDYFIRCSERFKKHGIRSAA 202 (385)
T ss_dssp CCEEEEETTSC----SS---HHHH-HTTSSCCGGGEEEECCCBCSTTCSB--CHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEECCCC----HH---HHHH-HHHHCCCHHHEEEEECCCCCCCCCC--CHHHHHHHHHHHHHCCCCEEE
T ss_conf 97899966558----89---9999-9981897430799866579998788--999999999999976997699
No 119
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=91.73 E-value=0.54 Score=23.54 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC--CCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-E
Q ss_conf 09998999999999889899991887764548889727--99899971688539994579999999999997798099-9
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI--PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-A 915 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l--~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-A 915 (963)
++......+...|++.|+.+ ++-..+|-..+..+++- ++|.|=+|-.+ . +-+.-.+++.|-+.- -.+.+| .
T Consensus 44 D~~~~~~~l~~~L~~~g~~v-v~~a~~g~eAl~~~~~~~p~~dlvilD~~m-P--~~dG~e~~~~ir~~~--~~~piI~l 117 (157)
T 3hzh_A 44 DSVFTVKQLTQIFTSEGFNI-IDTAADGEEAVIKYKNHYPNIDIVTLXITM-P--KMDGITCLSNIMEFD--KNARVIMI 117 (157)
T ss_dssp SCHHHHHHHHHHHHHTTCEE-EEEESSHHHHHHHHHHHGGGCCEEEECSSC-S--SSCHHHHHHHHHHHC--TTCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEE-EEEECCHHHHHHHHHHCCCCCEEEEEECCC-C--CCCHHHHHHHHHHHC--CCCCEEEE
T ss_conf 99999999999999879989-999899999999998419891899985689-9--997899999999719--99976876
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 70399899998998099899405206899989999999851
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
.+..+++......+.|++. |+.||...+++..-+++-
T Consensus 118 T~~~~~~~~~~a~~~Ga~~----yl~KP~~~~~L~~~i~~v 154 (157)
T 3hzh_A 118 SALGKEQLVKDCLIKGAKT----FIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp ESCCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 3279999999999859988----997989999999999999
No 120
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=91.57 E-value=0.45 Score=24.23 Aligned_cols=10 Identities=20% Similarity=0.508 Sum_probs=7.3
Q ss_pred CEEEEEEECC
Q ss_conf 4899999767
Q gi|254780468|r 565 RPTVMVIDID 574 (963)
Q Consensus 565 ~~~l~~idid 574 (963)
++-++++|+.
T Consensus 48 ~pDlvllD~~ 57 (208)
T 1yio_A 48 QHGCLVLDMR 57 (208)
T ss_dssp SCEEEEEESC
T ss_pred CCCEEEEECC
T ss_conf 9998998578
No 121
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=91.32 E-value=0.57 Score=23.39 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
+|..........|++.|+++.. ..+|-..+..+.+-++|.|=+|-.+ -+.+.-.+++.+-+-...-++.+| ..+
T Consensus 10 Dd~~~~~~l~~~L~~~G~~v~~--a~~~~~al~~l~~~~~dlii~D~~m---p~~~G~~l~~~ir~~~~~~~~piI~ls~ 84 (127)
T 2jba_A 10 DEAPIREMVCFVLEQNGFQPVE--AEDYDSAVNQLNEPWPDLILLAWML---PGGSGIQFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ECSHHHHHTTCSSSCCSEEEEESEE---TTEEHHHHHHHHHTSTTTTTSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEECCCC---CCCCHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 9999999999999987999999--8999999999971799999981889---9962899999998478779990999989
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3998999989980998994052068999899999998516
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
-.+.++.....+.|++. |+.||...+++...++...
T Consensus 85 ~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~~l 120 (127)
T 2jba_A 85 RGEEEDRVRGLETGADD----CITKPFSPKELVARIKAVM 120 (127)
T ss_dssp TTHHHHHHTTCCCSCSE----EEEESCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 89999999999849858----7719999999999999998
No 122
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=91.27 E-value=0.6 Score=23.20 Aligned_cols=118 Identities=8% Similarity=0.085 Sum_probs=79.1
Q ss_pred HHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHH
Q ss_conf 54699997133775099989999999998898999918877645488897279989997168853999457999999999
Q gi|254780468|r 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIP 904 (963)
Q Consensus 825 ~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~ 904 (963)
|.++.+=|-| +++.....+...|...|---.+...++|...+..+.+.++|.|=+|-.+ . +.+.-.+++.+-+
T Consensus 13 ~~~irVLIvD----D~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDvvllDl~m-p--~~~G~el~~~ir~ 85 (152)
T 3eul_A 13 PEKVRVVVGD----DHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-P--GMDGAQVAAAVRS 85 (152)
T ss_dssp -CCEEEEEEC----SSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-S--SSCHHHHHHHHHH
T ss_pred CCCCEEEEEE----CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC-C--CCCHHHHHHHHHH
T ss_conf 9988899994----9999999999999859895799998999999999984699999981899-9--9899999999997
Q ss_pred HHHHCCCE-EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99977980-9997039989999899809989940520689998999999985
Q gi|254780468|r 905 MAKNIETT-IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 905 ~a~~lgi~-viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
.. -+++ ++..+-++.+......+.|++. |+.||.+.+++.+-+++
T Consensus 86 ~~--~~~~vivlS~~~~~~~~~~a~~~Ga~~----yl~Kp~~~~~L~~aI~~ 131 (152)
T 3eul_A 86 YE--LPTRVLLISAHDEPAIVYQALQQGAAG----FLLKDSTRTEIVKAVLD 131 (152)
T ss_dssp TT--CSCEEEEEESCCCHHHHHHHHHTTCSE----EEETTCCHHHHHHHHHH
T ss_pred HC--CCCEEEEEECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 58--998599996869999999999869989----99799999999999999
No 123
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=91.26 E-value=0.6 Score=23.19 Aligned_cols=110 Identities=10% Similarity=0.131 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH-HCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-E
Q ss_conf 099989999999998898999918877645488897-27998999716885399945799999999999977980999-7
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG-YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-K 916 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~-~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-e 916 (963)
++..........|++.|++. +....+|-..+..+. +-++|.|=+|-.+ . +.+.-.+++.+-+....-.+.+|. .
T Consensus 13 D~~~~~~~l~~~L~~~g~~~-v~~a~~g~eal~~l~~~~~~dliilD~~m-P--~~~G~el~~~ir~~~~~~~~pii~lt 88 (129)
T 3h1g_A 13 DSSTMRRIIKNTLSRLGYED-VLEAEHGVEAWEKLDANADTKVLITDWNM-P--EMNGLDLVKKVRSDSRFKEIPIIMIT 88 (129)
T ss_dssp SCHHHHHHHHHHHHHTTCCC-EEEESSHHHHHHHHHHCTTCCEEEECSCC-S--SSCHHHHHHHHHTSTTCTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEE-EEEECCHHHHHHHHHHCCCCCEEEEECCC-C--CCCCHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 88999999999999869969-99989999999999737999899622158-8--88879999999837567999399997
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 0399899998998099899405206899989999999851
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
+-.+.+......+.|++. |+.||...+++...+++.
T Consensus 89 ~~~~~~~~~~a~~~G~~~----~l~KP~~~~~L~~~i~~~ 124 (129)
T 3h1g_A 89 AEGGKAEVITALKAGVNN----YIVKPFTPQVLKEKLEVV 124 (129)
T ss_dssp SCCSHHHHHHHHHHTCCE----EEESCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 679999999999869989----998989999999999999
No 124
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=91.24 E-value=0.6 Score=23.18 Aligned_cols=112 Identities=12% Similarity=0.132 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH-----CCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 0999899999999988989999188776454888972-----79989997168853999457999999999999779809
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY-----IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI 913 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~-----l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~v 913 (963)
+|.....-+.+.|+..|++ .++-..+|...+..+++ -++|.|=+|-.+ .+++ .-.+++.+-+ -....+.+
T Consensus 10 D~~~~~~~l~~~L~~~g~~-~v~~a~~g~eal~~l~~~~~~~~~~dlil~D~~M-P~~d--G~~~~~~ir~-~~~~~~pi 84 (133)
T 2r25_B 10 DNHVNQEVIKRMLNLEGIE-NIELACDGQEAFDKVKELTSKGENYNMIFMDVQM-PKVD--GLLSTKMIRR-DLGYTSPI 84 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCC-SSSC--HHHHHHHHHH-HSCCCSCE
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCC-CCCC--HHHHHHHHHH-CCCCCCCE
T ss_conf 9899999999999986994-8999899999999998742136898889973888-9988--9999999986-48999928
Q ss_pred E-EEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9-970399899998998099899405206899989999999851611
Q gi|254780468|r 914 I-AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 (963)
Q Consensus 914 i-AegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~ 959 (963)
| ..+-.+.+......+.|++ | |+.||...+++...+++-...
T Consensus 85 I~lta~~~~~~~~~~~~~G~~---~-~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 85 VALTAFADDSNIKECLESGMN---G-FLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp EEEESCCSHHHHHHHHHTTCS---E-EEESSCCHHHHHHHHHHHCTT
T ss_pred EEEECCCCHHHHHHHHHCCCC---E-EEECCCCHHHHHHHHHHHHHH
T ss_conf 999746999999999986998---8-997989999999999999999
No 125
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A
Probab=91.22 E-value=0.61 Score=23.16 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
+|+.........|++.|+.+.. +.+|-..+..+.+-++|.|=+|-.+ . +-+.-.+++.+- +.-+..+| ..+
T Consensus 10 Dd~~~~~~l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~dlii~D~~m-P--~~~G~e~~~~~r---~~~~~~ii~lt~ 81 (120)
T 3f6p_A 10 DEKPIADILEFNLRKEGYEVHC--AHDGNEAVEMVEELQPDLILLDIML-P--NKDGVEVCREVR---KKYDMPIIMLTA 81 (120)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHTTCCSEEEEETTS-T--TTHHHHHHHHHH---TTCCSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEEECCC-C--CCCHHHHHHHHH---HCCCCCEEEEEC
T ss_conf 9999999999999988999999--8999999999971899999982999-9--999999999998---168995899976
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
..+.+......+.|++. |+.||...+++...++..
T Consensus 82 ~~~~~~~~~a~~~Ga~~----yl~KP~~~~~L~~~i~~~ 116 (120)
T 3f6p_A 82 KDSEIDKVIGLEIGADD----YVTKPFSTRELLARVKAN 116 (120)
T ss_dssp SSCHHHHHHHHHTTCCE----EEEESCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 79999999999759998----997999999999999999
No 126
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=90.95 E-value=0.61 Score=23.13 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHH---CCCEEEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997---7980999
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN---IETTIIA 915 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~---lgi~viA 915 (963)
+|........+.|++.|+++-. ..+|-..+..+++-++|.|=+|-.+ .++ +.-.+++.+-+.-+. -.+.+|+
T Consensus 18 D~~~~r~~l~~~L~~~g~~v~~--a~~g~eAl~~~~~~~~dlii~D~~m-P~~--dG~el~~~ir~~~~~~~~~~ipii~ 92 (140)
T 3c97_A 18 DNDICRLVAAKALEKCTNDITV--VTNGLQALQAYQNRQFDVIIMDIQM-PVM--DGLEAVSEIRNYERTHNTKRASIIA 92 (140)
T ss_dssp CCHHHHHHHHHHHTTTCSEEEE--ESSHHHHHHHHHHSCCSEEEECTTC-CSS--CHHHHHHHHHHHHHHHTCCCCCCEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9899999999999987999999--8999999999870799889994799-998--9999999998352103789983999
Q ss_pred E-ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 7-03998999989980998994052068999899999998516
Q gi|254780468|r 916 K-DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 916 e-gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
- +-..++. ..+.|++. |+.||...+++.+.+++..
T Consensus 93 ~ta~~~~~~---~~~ag~~~----~l~KP~~~~~L~~~i~~~~ 128 (140)
T 3c97_A 93 ITADTIDDD---RPGAELDE----YVSKPLNPNQLRDVVLTCH 128 (140)
T ss_dssp EESSCCSCC---CCCSSCSE----EEESSCCHHHHHHHHHHHH
T ss_pred EECCCCHHH---HHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 989962999---98579988----9989899999999999997
No 127
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C}
Probab=90.86 E-value=0.65 Score=22.91 Aligned_cols=109 Identities=10% Similarity=0.116 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCC-EEEEEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798-099970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET-TIIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi-~viAeg 917 (963)
++..........|+..|+++.. +.+|...+..+.+-++|.+=+|-.+- +.+.+.-.....+. .+...+ -++..|
T Consensus 14 Dd~~~r~~l~~~L~~~g~~v~~--a~~~~eal~~l~~~~~d~vilD~~l~-~~~~~gl~~~~~~~--~~~~~~pvi~lt~ 88 (136)
T 3kto_A 14 HQKDARAALSKLLSPLDVTIQC--FASAESFMRQQISDDAIGMIIEAHLE-DKKDSGIELLETLV--KRGFHLPTIVMAS 88 (136)
T ss_dssp SCHHHHHHHHHHHTTSSSEEEE--ESSHHHHTTSCCCTTEEEEEEETTGG-GBTTHHHHHHHHHH--HTTCCCCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEECCC-CCCCCCHHHHHHHH--HCCCCCCEEEEEE
T ss_conf 9999999999999987999999--89999999999847998899993686-47884089999997--5026886799970
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.|++ .|+.||...+++...+++-
T Consensus 89 ~~~~~~~~~a~~~Ga~----dyl~KP~~~~~L~~~i~~~ 123 (136)
T 3kto_A 89 SSDIPTAVRAMRASAA----DFIEKPFIEHVLVHDVQQI 123 (136)
T ss_dssp SCCHHHHHHHHHTTCS----EEEESSBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHHH
T ss_conf 5999999999975994----8998989999999999999
No 128
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=90.78 E-value=0.66 Score=22.86 Aligned_cols=107 Identities=16% Similarity=0.047 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEE-EEEE
Q ss_conf 099989999999998898999918877645488897279989997168853999457999999999999779809-9970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI-IAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~v-iAeg 917 (963)
++......+-..|+..|+.+.. +.+|-..+..+..-++|.|=+|-.+ .++ +.-.+++.+-+. .-++.+ +..|
T Consensus 22 Dd~~~~~~l~~~L~~~g~~v~~--a~~~~eAl~~l~~~~~dlvi~D~~m-P~~--~G~ell~~ir~~--~~~~piI~lT~ 94 (153)
T 3hv2_A 22 SQEVILQRLQQLLSPLPYTLHF--ARDATQALQLLASREVDLVISAAHL-PQM--DGPTLLARIHQQ--YPSTTRILLTG 94 (153)
T ss_dssp SCHHHHHHHHHHHTTSSCEEEE--ESSHHHHHHHHHHSCCSEEEEESCC-SSS--CHHHHHHHHHHH--CTTSEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHH--CCCCCEEEEEC
T ss_conf 9999999999999987999999--8999999999872799999983678-899--889999999986--89996899979
Q ss_pred CCCHHHHHHHHHCC-CCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 39989999899809-9899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G-~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.| ++ .|+.||...+++...+++-
T Consensus 95 ~~~~~~~~~a~~~Gav~----~yl~KP~~~~~L~~~i~~~ 130 (153)
T 3hv2_A 95 DPDLKLIAKAINEGEIY----RYLSKPWDDQELLLALRQA 130 (153)
T ss_dssp CCCHHHHHHHHHTTCCS----EEECSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCC----CEEECCCCHHHHHHHHHHH
T ss_conf 99999999999779988----7788989999999999999
No 129
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=90.59 E-value=0.69 Score=22.74 Aligned_cols=109 Identities=11% Similarity=0.059 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHH-HHHCCCEEEEECCCCCHHHHHHHH-HCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-
Q ss_conf 099989999999-998898999918877645488897-27998999716885399945799999999999977980999-
Q gi|254780468|r 839 GNPERSRLLLGR-LRKIGISLTLDDFGTKCSLLSYLG-YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA- 915 (963)
Q Consensus 839 ~~~~~~~~~~~~-l~~~G~~ialDdFG~g~ssl~~L~-~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA- 915 (963)
+|....+..++. |.+.+....+....+|...+..+. +-++|.|=+|-.+- + .+.-.+++.+-.. .-++++|.
T Consensus 10 DD~~~~r~~l~~~L~~~~~~~~v~~a~~~~eal~~l~~~~~~DlvllD~~mP-~--~~G~e~l~~ir~~--~p~~~iivl 84 (154)
T 2qsj_A 10 DDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLP-D--AEAIDGLVRLKRF--DPSNAVALI 84 (154)
T ss_dssp CSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC---------CHHHHHHHHHH--CTTSEEEEC
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCC-C--CCHHHHHHHHHHH--CCCCCEEEE
T ss_conf 4999999999999972899849999668999999997459997899808889-9--8889999999987--889979999
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 70399899998998099899405206899989999999851
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
.+-++.+......+.|++ || +.||.+.+++..-++.-
T Consensus 85 T~~~~~~~~~~a~~~Ga~---gy-l~K~~~~~~L~~aI~~v 121 (154)
T 2qsj_A 85 SGETDHELIRAALEAGAD---GF-IPKSADPQVLIHAVSLI 121 (154)
T ss_dssp -----CHHHHHHHHTTCC---BB-CCTTSCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHCCCC---EE-EECCCCHHHHHHHHHHH
T ss_conf 802899999999985998---89-97999999999999999
No 130
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes}
Probab=90.55 E-value=0.69 Score=22.71 Aligned_cols=106 Identities=9% Similarity=0.071 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
+++.........|...|+.+.. .++|-..+..+.+-++|.|=+|-.+ .++ +.-.+++.+-. +.-++.+|. .+
T Consensus 15 Dd~~~~~~l~~~L~~~g~~v~~--a~~g~eAl~~~~~~~~DlvilD~~m-P~~--dG~el~~~ir~--~~~~~piI~lT~ 87 (137)
T 3hdg_A 15 DDTDAREWLSTIISNHFPEVWS--AGDGEEGERLFGLHAPDVIITDIRM-PKL--GGLEMLDRIKA--GGAKPYVIVISA 87 (137)
T ss_dssp SCHHHHHHHHHHHHTTCSCEEE--ESSHHHHHHHHHHHCCSEEEECSSC-SSS--CHHHHHHHHHH--TTCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHH--HCCCCCEEEEEC
T ss_conf 8899999999999967999999--8999999999874799899973789-999--89999999995--098995899989
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++ .|+.||...+++...+++
T Consensus 88 ~~~~~~~~~a~~~Ga~----~yl~KP~~~~~L~~~i~~ 121 (137)
T 3hdg_A 88 FSEMKYFIKAIELGVH----LFLPKPIEPGRLMETLED 121 (137)
T ss_dssp CCCHHHHHHHHHHCCS----EECCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHH
T ss_conf 8999999999986998----999798999999999999
No 131
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=90.43 E-value=0.71 Score=22.64 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980-99970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAeg 917 (963)
++..........|++.|+.+.. +.+|...+..++..++|.|=+|-.+= ++ +.-.+++.+-+. .-.+. ++-.+
T Consensus 15 D~~~~r~~l~~~L~~~g~~v~~--a~~g~~Al~~l~~~~~dlvi~D~~mP-~~--dG~~~~~~ir~~--~~~~piI~lt~ 87 (130)
T 3eod_A 15 DEQVFRSLLDSWFSSLGATTVL--AADGVDALELLGGFTPDLMICDIAMP-RM--NGLKLLEHIRNR--GDQTPVLVISA 87 (130)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESCHHHHHHHHTTCCCSEEEECCC--------CHHHHHHHHHT--TCCCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEHHHHCCC-CC--CHHHHHHHHHHH--CCCCCEEEEEC
T ss_conf 9899999999999988999999--89999999998528988745742179-99--899999999960--98998999989
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCC-HHHHHHHHHH
Q ss_conf 3998999989980998994052068999-8999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLG-FNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~-~~~~~~~l~~ 955 (963)
-++.+......+.|++. |+.||.. .+++.+.+..
T Consensus 88 ~~~~~~~~~a~~~Ga~~----~l~KP~~~~~~L~~~i~~ 122 (130)
T 3eod_A 88 TENMADIAKALRLGVED----VLLKPVKDLNRLREMVFA 122 (130)
T ss_dssp CCCHHHHHHHHHHCCSE----EEESCC---CHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCCHHHHHHHHHH
T ss_conf 99999999999869988----997999979999999999
No 132
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp}
Probab=90.34 E-value=0.72 Score=22.58 Aligned_cols=99 Identities=14% Similarity=0.045 Sum_probs=53.6
Q ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCC--CCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCHHHH
Q ss_conf 9999988989999188776454888972799899971688539--99457999999999999779809997-03998999
Q gi|254780468|r 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAK-DIYGEIDI 924 (963)
Q Consensus 848 ~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~--~~~~~~~~v~sii~~a~~lgi~viAe-gVE~~~~~ 924 (963)
.+..++.|..+..+= +...-...+.++..|+|.+...-... .+.... ..++..+...++.|||+ ||.+.++.
T Consensus 122 ~~~~~~~g~~v~~~v--~t~~~a~~a~~~Gad~Igv~~~~~~~~~~~~~~~---~~l~~~~~~~~ipvia~GGI~t~~d~ 196 (232)
T 3igs_A 122 LARIHHHHLLTMADC--SSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPD---LPLVKALHDAGCRVIAEGRYNSPALA 196 (232)
T ss_dssp HHHHHHTTCEEEEEC--CSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCC---HHHHHHHHHTTCCEEEESCCCSHHHH
T ss_pred HHHHHHCCCEEEEEC--CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH---HHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 999975498699986--9999999999689988997357787787670367---88999973378239985898999999
Q ss_pred HHHHHCCCCEEE-CCCCCCCCCHHHHHHHHH
Q ss_conf 989980998994-052068999899999998
Q gi|254780468|r 925 KELTRMGCDYIQ-DSHVASPLGFNSILKLLK 954 (963)
Q Consensus 925 ~~l~~~G~d~~Q-G~~~~~P~~~~~~~~~l~ 954 (963)
..+.++|+|.++ |-.+.+| +++.+.+.
T Consensus 197 ~~~~~~GAd~V~vGsAi~~~---~~i~~~~~ 224 (232)
T 3igs_A 197 AEAIRYGAWAVTVGSAITRL---EHICGWYN 224 (232)
T ss_dssp HHHHHTTCSEEEECHHHHCH---HHHHHHHH
T ss_pred HHHHHCCCCEEEECHHHCCH---HHHHHHHH
T ss_conf 99998699999989477590---99999999
No 133
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=90.22 E-value=0.73 Score=22.51 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
+++.........|++.|+.+. -+.+|-..+..+.+-++|.|=+|-.+ .++ +.-.+++.+-+.-. ++.+| ..|
T Consensus 9 Dd~~~~~~l~~~L~~~g~~v~--~a~~g~~al~~~~~~~~dlvilD~~m-P~~--~G~e~~~~ir~~~~--~~pii~lt~ 81 (116)
T 3a10_A 9 DEPNIRELLKEELQEEGYEID--TAENGEEALKKFFSGNYDLVILDIEM-PGI--SGLEVAGEIRKKKK--DAKIILLTA 81 (116)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSCC-SSS--CHHHHHHHHHHHCT--TCCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEECCC-CCC--CHHHHHHHHHHCCC--CCCEEEEEC
T ss_conf 999999999999998799999--98999999999984799989983688-999--99999999984399--897999989
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+ ....+.++|++- |+.||...+++..-+++-
T Consensus 82 ~~~--~~~~~~~~Ga~~----~l~KP~~~~~L~~~v~~~ 114 (116)
T 3a10_A 82 YSH--YRSDMSSWAADE----YVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp CGG--GGGCGGGGGSSE----EEECCSSTHHHHHHHHHH
T ss_pred CCC--HHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 789--999998269988----998989999999999997
No 134
>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=90.15 E-value=0.39 Score=24.68 Aligned_cols=108 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CHHHHHH-HHHHHHHCCCEE-EEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9998999-999999889899-99188776454888972799899971688539994579999999999997798099970
Q gi|254780468|r 840 NPERSRL-LLGRLRKIGISL-TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917 (963)
Q Consensus 840 ~~~~~~~-~~~~l~~~G~~i-alDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAeg 917 (963)
|....++ +...|...|+.+ .++....|...+..+.+.++|.|=+|-.+ -+ -+.-.+++.+-+...... -++..|
T Consensus 10 D~~~~r~~l~~~L~~~~~~~~~v~~a~~g~eal~~~~~~~pdlillDi~M-P~--~dG~el~~~i~~~~p~~~-iI~lT~ 85 (141)
T 3cu5_A 10 DEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRM-PR--MDGIELVDNILKLYPDCS-VIFMSG 85 (141)
T ss_dssp SCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCC-SS--SCHHHHHHHHHHHCTTCE-EEEECC
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC-CC--CCHHHHHHHHHHHCCCCC-EEEEEC
T ss_conf 99999999999999659984599897999999999986799989973689-99--999999999997587993-999978
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
-.+.+......+.|++. |+.||...+++...+++
T Consensus 86 ~~~~~~~~~a~~~Ga~~----yl~KP~~~~~L~~~i~~ 119 (141)
T 3cu5_A 86 YSDKEYLKAAIKFRAIR----YVEKPIDPSEIMDALKQ 119 (141)
T ss_dssp STTTCCC------CCCE----EECSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 79999999999869998----99798999999999999
No 135
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, GMP reductase domain, structural genomics; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=89.30 E-value=0.85 Score=21.99 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=57.1
Q ss_pred HHHH-HHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHH-----HCCCCHHHHHHHHHHHHHHH-------HCCCEEE
Q ss_conf 9999-988989999188776454888972799899971688-----53999457999999999999-------7798099
Q gi|254780468|r 848 LGRL-RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL-----MTGSTEKRIAILRSIIPMAK-------NIETTII 914 (963)
Q Consensus 848 ~~~l-~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sf-----v~~~~~~~~~~v~sii~~a~-------~lgi~vi 914 (963)
++.+ +..++.+.+-..+|.- .-..|.+..+|.||+.++- ..+...-.-..+..+...++ ..++.||
T Consensus 203 i~~~~~~~~vpII~~~v~t~e-~A~~l~~aGad~I~V~g~~~tt~~~~~~g~p~l~ai~eva~a~~~~~~~~~~~~ipVI 281 (393)
T 2qr6_A 203 LKEFIGSLDVPVIAGGVNDYT-TALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHII 281 (393)
T ss_dssp HHHHHHHCSSCEEEECCCSHH-HHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEE
T ss_pred HHHHHHHCCCCEEEECCCCHH-HHHHHHHCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999974169868983676999-9999997699879984666655223377662688999999999987776346886299
Q ss_pred EEE-CCCHHHHHHHHHCCCCEEE
Q ss_conf 970-3998999989980998994
Q gi|254780468|r 915 AKD-IYGEIDIKELTRMGCDYIQ 936 (963)
Q Consensus 915 Aeg-VE~~~~~~~l~~~G~d~~Q 936 (963)
|.| |-+..+....-.+|.|.+|
T Consensus 282 ADGGIr~g~DIaKALAlGAdaVm 304 (393)
T 2qr6_A 282 ADGSIENSGDVVKAIACGADAVV 304 (393)
T ss_dssp ECSSCCSHHHHHHHHHHTCSEEE
T ss_pred EECCCCCHHHHHHHHHCCCCEEC
T ss_conf 71698873899999983999720
No 136
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630}
Probab=89.19 E-value=0.86 Score=21.93 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEE-EEEE
Q ss_conf 099989999999998898999918877645488897279989997168853999457999999999999779809-9970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI-IAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~v-iAeg 917 (963)
++......+...|++.|+.+.. +.+|-..+..+..-++|.|=+|-.+ .+. +.-.+++.+-+ .-.+.+ +..+
T Consensus 12 Dd~~~~~~l~~~L~~~g~~v~~--a~~~~eal~~l~~~~~dlillD~~m-P~~--dG~el~~~~~~---~~~~piI~lt~ 83 (136)
T 2qzj_A 12 GDKDNCQKLKGFLEEKGISIDL--AYNCEEAIGKIFSNKYDLIFLEIIL-SDG--DGWTLCKKIRN---VTTCPIVYMTY 83 (136)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEE--ESSHHHHHHHHHHCCCSEEEEESEE-TTE--EHHHHHHHHHT---TCCCCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCC-CCC--CCHHHHHHHHH---CCCCCEEEEEE
T ss_conf 9999999999999987999999--8999999998862799999977999-899--86079999983---69998999996
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 39989999899809989940520689998999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
..+.+......+.|++- |+.||...+++...++.
T Consensus 84 ~~~~~~~~~al~~Ga~d----yl~KP~~~~~L~~~i~~ 117 (136)
T 2qzj_A 84 INEDQSILNALNSGGDD----YLIKPLNLEILYAKVKA 117 (136)
T ss_dssp CCCHHHHHHHHHTTCCE----EEESSCCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
T ss_conf 28999999999869988----99898999999999999
No 137
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=89.05 E-value=0.88 Score=21.86 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=9.8
Q ss_pred EEECCHHHHCCCHHHHHHHHHHHHC
Q ss_conf 9976977943914899999999881
Q gi|254780468|r 797 LINIASKDLLDNELCEGMQALISKT 821 (963)
Q Consensus 797 sINlS~~~l~~~~f~~~l~~~l~~~ 821 (963)
-||+... .+..|.+-+++.+.+.
T Consensus 228 KiNi~T~--l~~a~~~~~~~~l~~~ 250 (286)
T 1gvf_A 228 KVNVATE--LKIAFAGAVKAWFAEN 250 (286)
T ss_dssp EEEECHH--HHHHHHHHHHHHHHHC
T ss_pred EEEECCH--HHHHHHHHHHHHHHHC
T ss_conf 9995728--9999999999999868
No 138
>2vea_A Phytochrome-like protein CPH1; arginine finger, phosphorylation, tandem GAF domain, knot, kinase, receptor, PAS domain, chromophore; HET: CYC; 2.21A {Synechocystis SP} SCOP: d.110.2.1 d.110.2.4 d.110.3.9
Probab=88.83 E-value=0.54 Score=23.57 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=50.7
Q ss_pred EEEEEEC-CCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 8999987-997899988899762899778338978988626976899999999999607897389999998699968999
Q gi|254780468|r 417 IVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 (963)
Q Consensus 417 ~i~~~d~-~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w~ 495 (963)
.++..|. ...++++|+++++++|++++++.|. .+.+.++|++.+.+++.+......... ...++.+...+...++
T Consensus 31 ~Ll~ld~~~~~I~~vS~N~~~llG~~~e~llG~--~l~~ll~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 106 (520)
T 2vea_A 31 LVVVLQEPDLTISQISANCTGILGRSPEDLLGR--TLGEVFDSFQIDPIQSRLTAGQISSLN--PSKLWARVMGDDFVIF 106 (520)
T ss_dssp EEEEEETTTTEEEEEETTHHHHTSCCTTTSSTT--TTTTTSBCC--------CCCTTHHHHS--SEEEEEECC--CEEEE
T ss_pred EEEEEECCCCEEEEECCHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHHCCCCCCC--CEEEEEEECCCCCEEE
T ss_conf 799998898979999550998859498998299--878978978899999987403235689--7699998528997058
Q ss_pred EEEEEEEECCCCCEE
Q ss_conf 872267687999889
Q gi|254780468|r 496 IIRIRPMSNSNGDIL 510 (963)
Q Consensus 496 ~~~~~~i~~~~g~~~ 510 (963)
.... .+..+|..+
T Consensus 107 ~~~~--hr~~~~~~i 119 (520)
T 2vea_A 107 DGVF--HRNSDGLLV 119 (520)
T ss_dssp EEEE--EECSSCCEE
T ss_pred EEEE--EEECCCEEE
T ss_conf 9999--992891899
No 139
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=88.77 E-value=0.92 Score=21.72 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCC-CC-HHHHHHHHHHHHHHHHCCCEEE-E
Q ss_conf 0999899999999988989999188776454888972799899971688539-99-4579999999999997798099-9
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-ST-EKRIAILRSIIPMAKNIETTII-A 915 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~-~~-~~~~~~v~sii~~a~~lgi~vi-A 915 (963)
+++.....+-..|+..|+++.. +.+|-..+..+++-++|.|=+|-.+-.+ .+ -+.-.+++.+-+. .-++.|| .
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~dlillDl~mP~~~~~G~dGl~~l~~ir~~--~~~ipvI~l 86 (140)
T 2qr3_A 11 DNKGVLTAVQLLLKNHFSKVIT--LSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ--YRDLPVVLF 86 (140)
T ss_dssp SCHHHHHHHHHHHTTTSSEEEE--ECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH--CTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH--CCCCCEEEE
T ss_conf 9999999999999978999999--899999999997279999999168877776775199999999986--899828999
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 703998999989980998994052068999899999998516
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
.|-.+.+......+.|++- |+.||...+++..-+.+..
T Consensus 87 T~~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~al 124 (140)
T 2qr3_A 87 TAYADIDLAVRGIKEGASD----FVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp EEGGGHHHHHHHHHTTCCE----EEEESCCHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 7899999999999869978----9979899999999999999
No 140
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, structural genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=88.59 E-value=0.94 Score=21.63 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999779809997039989999899809989940520689998999999985
Q gi|254780468|r 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 900 ~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
...++.+|+.|+.|.+=.|.+++++..+.++|||.+.-.+ ++.+.++|++
T Consensus 231 ~~~v~~~~~~G~~V~vwTVn~~~~~~~l~~~GVdgIiTD~------P~~~~~~lke 280 (287)
T 2oog_A 231 EQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNF------ADKYKEVIKE 280 (287)
T ss_dssp HHHHHHHHHTTCEECCBCCCSHHHHHHHHHHTCSEEEESC------HHHHHHHHHC
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECC------HHHHHHHHHC
T ss_conf 9999999987999999808999999999866999999886------9999999970
No 141
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=87.59 E-value=0.87 Score=21.89 Aligned_cols=15 Identities=13% Similarity=0.157 Sum_probs=8.0
Q ss_pred CCCH-HHEEEEEEHHH
Q ss_conf 9995-46999971337
Q gi|254780468|r 822 LYSP-SRIKLSFSESV 836 (963)
Q Consensus 822 ~~~~-~~l~lEitE~~ 836 (963)
.++| +.++|+|.|..
T Consensus 524 ~L~P~~~~i~~~~~~~ 539 (543)
T 2zic_A 524 KLQPWDAFCIKILEHH 539 (543)
T ss_dssp EECTTCEEEEEEC---
T ss_pred EECCCEEEEEEEEECC
T ss_conf 8999869999998211
No 142
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=87.50 E-value=1.1 Score=21.15 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99989999999998898999918877645488897279989997168853999457999999999999779809997039
Q gi|254780468|r 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919 (963)
Q Consensus 840 ~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE 919 (963)
++.....+...|+..|....+.-+++|-..+..+++-++|.|=+|-.+ .+ -+.-.+++.+-+... ...+|.---.
T Consensus 18 ~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~l~~~~~DlvilDi~m-P~--~dG~el~~~ir~~~~--~~~iI~~t~~ 92 (143)
T 2qv0_A 18 EFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINI-PS--LDGVLLAQNISQFAH--KPFIVFITAW 92 (143)
T ss_dssp CHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSC-SS--SCHHHHHHHHTTSTT--CCEEEEEESC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC-CC--CCHHHHHHHHHHCCC--CCEEEEEECC
T ss_conf 999999999999868992799997999999999986699989987888-88--998999999995499--9808999778
Q ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 9899998998099899405206899989999999851
Q gi|254780468|r 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 920 ~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
++. .....+.|++. |+.||...+++.+.+++-
T Consensus 93 ~e~-~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~~ 124 (143)
T 2qv0_A 93 KEH-AVEAFELEAFD----YILKPYQESRIINMLQKL 124 (143)
T ss_dssp CTT-HHHHHHTTCSE----EEESSCCHHHHHHHHHHH
T ss_pred HHH-HHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 899-99999859988----997999999999999999
No 143
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.24 E-value=1.1 Score=21.04 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=24.0
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 232166306775324066999999999999875533
Q gi|254780468|r 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 (963)
Q Consensus 526 ~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~ 561 (963)
.+-++. --.|-++--.+...+...+++++...+..
T Consensus 88 v~Al~~-GA~Dyl~KP~~~~~L~~~I~~ale~~~~~ 122 (368)
T 3dzd_A 88 VKAIKK-GAYEFLEKPFSVERFLLTIKHAFEEYSKK 122 (368)
T ss_dssp HHHHHH-TCCEEEESSCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHC-CCCEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999974-87632058853799999999999999753
No 144
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=87.04 E-value=1.1 Score=20.95 Aligned_cols=11 Identities=18% Similarity=0.024 Sum_probs=5.6
Q ss_pred EEEECCCHHHH
Q ss_conf 99976785798
Q gi|254780468|r 569 MVIDIDKYKKI 579 (963)
Q Consensus 569 ~~idid~fk~i 579 (963)
=-+++|..+.+
T Consensus 194 DGfR~D~~~~~ 204 (558)
T 1uok_A 194 DGFRMDVINFI 204 (558)
T ss_dssp CEEEETTGGGS
T ss_pred CEEEECCCCEE
T ss_conf 86886474001
No 145
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=86.85 E-value=1.2 Score=20.88 Aligned_cols=110 Identities=13% Similarity=0.052 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHH-HH-CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 0999899999999-98-898999918877645488897279989997168853999457999999999999779809997
Q gi|254780468|r 839 GNPERSRLLLGRL-RK-IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAK 916 (963)
Q Consensus 839 ~~~~~~~~~~~~l-~~-~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAe 916 (963)
+|....+..++.+ .+ .|+.+ +...++|-..+..+.+.+||.|=+|-.+ -+.+.-.+++.+-+......+ ++..
T Consensus 12 DD~~~~r~~l~~~L~~~~~~~v-v~~a~~~~eal~~~~~~~pDlvllDi~m---P~~~G~e~~~~ir~~~~~~~i-ivlt 86 (153)
T 3cz5_A 12 DDHPIVREGYRRLIERRPGYAV-VAEAADAGEAYRLYRETTPDIVVMDLTL---PGPGGIEATRHIRQWDGAARI-LIFT 86 (153)
T ss_dssp CSCHHHHHHHHHHHTTSTTEEE-EEEESSHHHHHHHHHTTCCSEEEECSCC---SSSCHHHHHHHHHHHCTTCCE-EEEE
T ss_pred ECCHHHHHHHHHHHHHCCCCEE-EEEECCHHHHHHHHHCCCCCEEEEECCC---CCCCHHHHHHHHHHHCCCCCE-EEEE
T ss_conf 2999999999999985899189-9998999999999754699689996457---998789999999985899968-9998
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 03998999989980998994052068999899999998516
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
+-++.+......+.|++. |+.||.+.+++.+-++.-.
T Consensus 87 ~~~~~~~~~~al~~Ga~~----yl~Kp~~~~~L~~ai~~v~ 123 (153)
T 3cz5_A 87 MHQGSAFALKAFEAGASG----YVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp SCCSHHHHHHHHHTTCSE----EEETTSCTTHHHHHHHHHT
T ss_pred EECCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 148999999999869983----8968999999999999998
No 146
>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1
Probab=86.81 E-value=1.2 Score=20.87 Aligned_cols=110 Identities=10% Similarity=0.169 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 0999899999999988989999188776454888972-799899971688539994579999999999997798099970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY-IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~-l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAeg 917 (963)
+|..........|++.|+++-. +.+|...+..+.+ -++|.|=+|-.+ .+. +.-.+++.+-+ +.-++.+|.=-
T Consensus 23 Dd~~~~~~l~~~L~~~G~~v~~--~~~g~~al~~l~~~~~~DlvilD~~l-P~~--dG~~l~~~ir~--~~~~~piI~lt 95 (138)
T 2b4a_A 23 DEPSHATLIQYHLNQLGAEVTV--HPSGSAFFQHRSQLSTCDLLIVSDQL-VDL--SIFSLLDIVKE--QTKQPSVLILT 95 (138)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHTGGGGGSCSEEEEETTC-TTS--CHHHHHHHHTT--SSSCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCCEEEEECCC-CCC--CHHHHHHHHHH--HCCCCCEEEEE
T ss_conf 9999999999999985997998--09999999999836999889985888-998--88999999997--09999689998
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 39989999899809989940520689998999999985161102
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~~~ 961 (963)
-.+++ .....+.|. + |+.||...+++..-++.+.|-..
T Consensus 96 ~~~~~-~~~~~~~ga----d-yL~KP~~~~eL~a~v~~~~~~~~ 133 (138)
T 2b4a_A 96 TGRHE-LIESSEHNL----S-YLQKPFAISELRAAIDYHKPSMG 133 (138)
T ss_dssp SCC---CCCCSSSCE----E-EEESSCCHHHHHHHHHHTCCC--
T ss_pred CCHHH-HHHHHHCCC----C-EEECCCCHHHHHHHHHHHCCCCC
T ss_conf 98179-999853699----8-89899999999999998561148
No 147
>2o9c_A Bacteriophytochrome; phytochrome chromophore, figure-OF-eight knot, phytochromobilin, biliverdin, PAS, GAF, transferase; HET: LBV; 1.45A {Deinococcus radiodurans} SCOP: d.110.2.1 d.110.3.9 PDB: 2o9b_A* 1ztu_A*
Probab=86.64 E-value=1.2 Score=20.80 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=78.7
Q ss_pred EEEEEEC-CCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 8999987-997899988899762899778338978988626976899999999999607897389999998699968999
Q gi|254780468|r 417 IVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 (963)
Q Consensus 417 ~i~~~d~-~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~e~r~r~~dG~~~w~ 495 (963)
..+..|. ++.++++|+++++++|++++++.|.... .+.|++.....+.+. ...........+....+|...|.
T Consensus 55 ~Ll~ld~~~~~I~~vS~N~~~ilG~~p~elLG~~l~---~ll~e~~~~l~~~l~---~~~~~~~~~~~~~~~~~~~~~~~ 128 (342)
T 2o9c_A 55 ALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLA---ALLPEQWPALQAALP---PGCPDALQYRATLDWPAAGHLSL 128 (342)
T ss_dssp EEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHH---HHCTTTHHHHHHHSC---TTCCTTCCEEEEECCSSSSEEEE
T ss_pred EEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHH---HHCCHHHHHHHHHHH---CCCCCCEEEEEEECCCCCCEEEE
T ss_conf 799998899979999065998868297998699879---978747899998764---06985202256761688727999
Q ss_pred EEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 87226768799988999999985305773123216630677532406699999999999987553389848999997678
Q gi|254780468|r 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 (963)
Q Consensus 496 ~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~ 575 (963)
.+.. ..++-+.. +.. .. .+..+. .. .+...+.+.
T Consensus 129 ~~hr----~~~~lilE----lEp------~~--------~~~~~~----~~---~l~~~~~~i----------------- 162 (342)
T 2o9c_A 129 TVHR----VGELLILE----FEP------TE--------AWDSTG----PH---ALRNAMFAL----------------- 162 (342)
T ss_dssp EEEE----ETTEEEEE----EEE------EC--------GGGCCC----HH---HHHHHHHHH-----------------
T ss_pred EEEE----CCCEEEEE----EEE------CC--------CCCCCH----HH---HHHHHHHHH-----------------
T ss_conf 9997----38877999----850------55--------554117----99---999999999-----------------
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCEEEC
Q ss_conf 579888427788999999999999983489-976999806410202
Q gi|254780468|r 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGII 620 (963)
Q Consensus 576 fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~-~~~laR~~gdeFail 620 (963)
.+. ..-+++++.+++.+++++.- ...+||+..|.=+.+
T Consensus 163 ----~~s---~~l~~i~~~~v~evr~llg~DRV~iYrF~~d~~G~V 201 (342)
T 2o9c_A 163 ----ESA---PNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEV 201 (342)
T ss_dssp ----HHC---CSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEE
T ss_pred ----HHC---CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEE
T ss_conf ----977---689999999999999985898799998758898689
No 148
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=85.84 E-value=1.3 Score=20.50 Aligned_cols=135 Identities=10% Similarity=0.002 Sum_probs=80.9
Q ss_pred EEEEEECC--HHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH--CCCEEEEEC--CCCC-
Q ss_conf 49999769--7794391489999999988199954699997133775099989999999998--898999918--8776-
Q gi|254780468|r 794 IFILINIA--SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK--IGISLTLDD--FGTK- 866 (963)
Q Consensus 794 ~~vsINlS--~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~--~G~~ialDd--FG~g- 866 (963)
+.+.|.+= ......+.+.+.+.+.+.+++.. +++++.- -+++.+ +.++. -..++.+-. .-..
T Consensus 100 ~~l~iEiK~~~~~~~~~~~~~~~~~~l~~~~~~-~~v~~~S------f~~~~l----~~~~~~~~~~~~~~~~~~~~~~~ 168 (250)
T 3ks6_A 100 VNFRCEIKPGVDGLPYEGFVALVIAGLERHSML-ERTTFSS------FLLASM----DELWKATTRPRLWLVSPSVLQQL 168 (250)
T ss_dssp CEEEEEECCCTTSCCCTTHHHHHHHHHHHTTCG-GGEEEEE------SCHHHH----HHHHHHCCSCEEEEECHHHHHHH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEE------CCHHHH----HHHHHHCCCCCEEEEEHHHHHCC
T ss_conf 763141036643331678999999999851676-6527850------889999----99998588872899601243203
Q ss_pred --HHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf --454888972799899971688539994579999999999997798099970399899998998099899405206899
Q gi|254780468|r 867 --CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 (963)
Q Consensus 867 --~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~ 944 (963)
...+.......++.+-++...+. +.++..+|+.|++|.+=.|.++++...+.++|||.+.-.+ |
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~GvdgIiTD~---P- 234 (250)
T 3ks6_A 169 GPGAVIETAIAHSIHEIGVHIDTAD----------AGLMAQVQAAGLDFGCWAAHTPSQITKALDLGVKVFTTDR---P- 234 (250)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGCC----------HHHHHHHHHTTCEEEEECCCSHHHHHHHHHHTCSEEEESC---H-
T ss_pred CHHHHHHHHHHCCCCEEECCCCCCC----------HHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECC---H-
T ss_conf 3788998876332254232523279----------9999999986999999889959999999976999999896---9-
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999985
Q gi|254780468|r 945 GFNSILKLLKE 955 (963)
Q Consensus 945 ~~~~~~~~l~~ 955 (963)
+.+.++.++
T Consensus 235 --~~a~~~~~~ 243 (250)
T 3ks6_A 235 --TLAIALRTE 243 (250)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
T ss_conf --999999997
No 149
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A
Probab=85.78 E-value=1.1 Score=21.02 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999834
Q gi|254780468|r 590 DVLVSLTRRIGELL 603 (963)
Q Consensus 590 ~lL~~ia~~L~~~~ 603 (963)
+.++.+-+..+...
T Consensus 253 ~~~~~~~~~~~~~~ 266 (589)
T 3aj7_A 253 EFHQEMNQFIRNRV 266 (589)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 89999999988641
No 150
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek KEY, C-terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=85.15 E-value=1.4 Score=20.26 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999983
Q gi|254780468|r 590 DVLVSLTRRIGEL 602 (963)
Q Consensus 590 ~lL~~ia~~L~~~ 602 (963)
..++.+-+.+++.
T Consensus 152 ~~~~~~~~~~~~~ 164 (424)
T 2dh2_A 152 SFLAEWQNITKGF 164 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 7899999988720
No 151
>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A
Probab=85.03 E-value=1.4 Score=20.22 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEE-HHHHC-CCCHHHHHHHHHHHHHHHHCCCEEEEE-EC
Q ss_conf 9899999999988989999188776454888972799899971-68853-999457999999999999779809997-03
Q gi|254780468|r 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN-GSLMT-GSTEKRIAILRSIIPMAKNIETTIIAK-DI 918 (963)
Q Consensus 842 ~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD-~sfv~-~~~~~~~~~v~sii~~a~~lgi~viAe-gV 918 (963)
+....+.+.-+++|...-++=. ...-+....+...+.|=|. |.+.. ..+.++. ..+...... +..+|+| ||
T Consensus 139 ~~l~~l~~~a~~lGle~LvEvh--~~~El~~a~~~~a~iIGINnRnL~t~~vd~~~~---~~l~~~ip~-~~~~IaESGI 212 (247)
T 1a53_A 139 RELESLLEYARSYGMEPLIEIN--DENDLDIALRIGARFIGINSRDLETLEINKENQ---RKLISMIPS-NVVKVAESGI 212 (247)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEC--SHHHHHHHHHTTCSEEEEESBCTTTCCBCHHHH---HHHHHHSCT-TSEEEEESCC
T ss_pred HHHHHHHHHHHHHCCEEEEEEC--CHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHH---HHHHHHCCC-CCEEEEECCC
T ss_conf 8899999999984987577737--999999998189984987141143204476789---999963888-9879996479
Q ss_pred CCHHHHHHHHHCCCCEE
Q ss_conf 99899998998099899
Q gi|254780468|r 919 YGEIDIKELTRMGCDYI 935 (963)
Q Consensus 919 E~~~~~~~l~~~G~d~~ 935 (963)
.+.++...+.+.|+|.+
T Consensus 213 ~t~ed~~~l~~~G~dav 229 (247)
T 1a53_A 213 SERNEIEELRKLGVNAF 229 (247)
T ss_dssp CCHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHCCCCEE
T ss_conf 99999999997799999
No 152
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=84.99 E-value=0.38 Score=24.85 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=6.3
Q ss_pred CCCCCEEEEEEEEC
Q ss_conf 88873579999855
Q gi|254780468|r 82 IRHRGDWAVFALAN 95 (963)
Q Consensus 82 ~~~s~~W~~~~l~N 95 (963)
.|.++.|+-=...|
T Consensus 69 LGvtaI~L~P~~e~ 82 (686)
T 1d3c_A 69 MGVTAIWISQPVEN 82 (686)
T ss_dssp GTCCEEEECCCEEE
T ss_pred CCCCEEEECCCCCC
T ss_conf 29998997941017
No 153
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=84.75 E-value=1.4 Score=20.13 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999999999870897405
Q gi|254780468|r 673 MLKNAELAMYHAKHRGGNHVE 693 (963)
Q Consensus 673 ll~~Ad~Al~~Ak~~g~~~~~ 693 (963)
.+.+-+.|....++.|.+...
T Consensus 153 ~~T~Peea~~Fv~~TgvD~LA 173 (307)
T 3n9r_A 153 VLVNPKEAEQFVKESQVDYLA 173 (307)
T ss_dssp CSCCHHHHHHHHHHHCCSEEE
T ss_pred CCCCHHHHHHHHHHHCCCEEC
T ss_conf 247989999998710887342
No 154
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=84.61 E-value=1.5 Score=20.09 Aligned_cols=107 Identities=12% Similarity=-0.011 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH--CCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEE
Q ss_conf 0999899999999988989999188776454888972--7998999716885399945799999999999977980-999
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY--IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIA 915 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~--l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viA 915 (963)
+++......-..|+..|+.+.. +.+|-..+..+.+ -++|.|-+|-. .-+-+...+++.+-+. .-++. ++.
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v~~--a~~~~eal~~~~~~~~~~dlvilD~~---mp~~~G~~l~~~~~~~--~~~~pvI~l 83 (143)
T 3jte_A 11 DESTILQNIKFLLEIDGNEVLT--ASSSTEGLRIFTENCNSIDVVITDMK---MPKLSGMDILREIKKI--TPHMAVIIL 83 (143)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHHTTTTCCEEEEESC---CSSSCHHHHHHHHHHH--CTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCCEEEEECCC---CCCCCHHHHHHHHHHH--CCCCCEEEE
T ss_conf 9999999999999987999999--78899999999845999739997477---7777889999999987--899969999
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 70399899998998099899405206899989999999851
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
.|-.+.+......+.|++. |+.||...+++...+++.
T Consensus 84 T~~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~~ 120 (143)
T 3jte_A 84 TGHGDLDNAILAMKEGAFE----YLRKPVTAQDLSIAINNA 120 (143)
T ss_dssp ECTTCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 8889999999999869989----982899999999999999
No 155
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=84.55 E-value=1.5 Score=20.07 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980-99970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAeg 917 (963)
+|+.........|++.|+++. -..+|-..+..+.+-++|.|=+|-.+ . +.+.-.+++.+-. .-++. ++..+
T Consensus 9 Dd~~~~~~l~~~L~~~g~~v~--~a~~~~~al~~~~~~~~dlil~D~~m-p--~~~G~~l~~~ir~---~~~ipiI~lt~ 80 (121)
T 1zh2_A 9 DEQAIRRFLRTALEGDGMRVF--EAETLQRGLLEAATRKPDLIILDLGL-P--DGDGIEFIRDLRQ---WSAVPVIVLSA 80 (121)
T ss_dssp SCHHHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHHCCSEEEEESEE-T--TEEHHHHHHHHHT---TCCCCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEECCC-C--CCCHHHHHHHHHH---HCCCEEEEEEC
T ss_conf 999999999999998799999--98889999999971799999980999-9--9897999999997---47990999978
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.|++. |+.||...+++..-++..
T Consensus 81 ~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~~ 115 (121)
T 1zh2_A 81 RSEESDKIAALDAGADD----YLSKPFGIGELQARLRVA 115 (121)
T ss_dssp CCSHHHHHHHHHHTCSE----EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 59999999999869999----997999999999999999
No 156
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, glycerol complex; 1.30A {Thermus thermophilus HB8} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=84.37 E-value=1.5 Score=20.01 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCC
Q ss_conf 889727998999716885399945799999999999977980999703998999989980998994052
Q gi|254780468|r 871 SYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 (963)
Q Consensus 871 ~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~ 939 (963)
..+..+.++.+-++..++. ..+++.+|+.|++|.+=.|.++++.+.+.++|+|.+.-.+
T Consensus 157 ~~~~~~~~~~i~~~~~~~~----------~~~v~~~~~~g~~V~~wTvn~~~~~~~l~~~GvdgI~TD~ 215 (224)
T 1vd6_A 157 ALLPCLGVEAVHPHHALVT----------EEAVAGWRKRGLFVVAWTVNEEGEARRLLALGLDGLIGDR 215 (224)
T ss_dssp GGGGGSCCSEEEEBGGGCC----------HHHHHHHHHTTCEEEEECCCCHHHHHHHHHTTCSEEEESC
T ss_pred HCCCCCCCEEEEECCCCCC----------HHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECC
T ss_conf 1034457518972222244----------8999999986999999899999999999976999999895
No 157
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, X-RAY diffraction, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=83.59 E-value=1.6 Score=19.77 Aligned_cols=90 Identities=12% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEE-HHHHC-CCCHHHHHHHHHHHHHHHHC--CCEEEEE-EC
Q ss_conf 99999999988989999188776454888972799899971-68853-99945799999999999977--9809997-03
Q gi|254780468|r 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN-GSLMT-GSTEKRIAILRSIIPMAKNI--ETTIIAK-DI 918 (963)
Q Consensus 844 ~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD-~sfv~-~~~~~~~~~v~sii~~a~~l--gi~viAe-gV 918 (963)
...+++.-+++|...-+.=.. ...+....++.++.|=|. |.+-. ..|.+... .+..+.... +..+|+| ||
T Consensus 143 l~~l~~~A~~lGle~LVEvh~--~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~---~l~~~i~~~~~~~~~IsESGI 217 (254)
T 1vc4_A 143 TGAYLEEARRLGLEALVEVHT--ERELEIALEAGAEVLGINNRDLATLHINLETAP---RLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp HHHHHHHHHHHTCEEEEEECS--HHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHH---HHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEECC--HHHHHHHHCCCCCEEEEECCCCHHHEECHHHHH---HHHHHHHCCCCCCEEEECCCC
T ss_conf 999999999848862787078--889724223899789873577123023668899---987432015789879975799
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 998999989980998994052068
Q gi|254780468|r 919 YGEIDIKELTRMGCDYIQDSHVAS 942 (963)
Q Consensus 919 E~~~~~~~l~~~G~d~~QG~~~~~ 942 (963)
.+.++...++. |+ +|+++|.
T Consensus 218 ~~~~dv~~l~~-G~---davLIGe 237 (254)
T 1vc4_A 218 SRKEELKALEG-LF---DAVLIGT 237 (254)
T ss_dssp CSHHHHHTTTT-TC---SEEEECH
T ss_pred CCHHHHHHHHC-CC---CEEEECH
T ss_conf 99999999985-99---9999883
No 158
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Probab=83.28 E-value=1.6 Score=19.68 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=7.2
Q ss_pred CEEEEEECCCEEE
Q ss_conf 7699980641020
Q gi|254780468|r 607 DILARLSGNRFGI 619 (963)
Q Consensus 607 ~~laR~~gdeFai 619 (963)
..-.=+.|+||+.
T Consensus 495 GiP~iy~GdE~G~ 507 (637)
T 1gjw_A 495 SIPYVNTGQEIGE 507 (637)
T ss_dssp EEEEEETTGGGTC
T ss_pred CCCEEECCEECCC
T ss_conf 9659965651476
No 159
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=82.62 E-value=1.5 Score=19.91 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=6.6
Q ss_pred EEEEEECCCEEE
Q ss_conf 699980641020
Q gi|254780468|r 608 ILARLSGNRFGI 619 (963)
Q Consensus 608 ~laR~~gdeFai 619 (963)
.-.=+-|+|+++
T Consensus 446 iP~IYyG~EiGm 457 (601)
T 3edf_A 446 IPQFYSGDEILM 457 (601)
T ss_dssp EEEEETTGGGTC
T ss_pred CCEEECCHHCCC
T ss_conf 858974731073
No 160
>3l12_A Putative glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=82.50 E-value=1.7 Score=19.46 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999997798099970399899998998099899405206899989999999851
Q gi|254780468|r 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 900 ~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
..++..+|+.|++|++=.|.++++++.+.++|||.+.-.+ ++.+.++|+++
T Consensus 258 ~~~v~~~~~~G~~V~~wTVn~~~~~~~l~~~GVdgIiTD~------P~~~~~~l~~~ 308 (313)
T 3l12_A 258 PELVAEAHDLGLIVLTWTVNEPEDIRRMATTGVDGIVTDY------PGRTQRILIDM 308 (313)
T ss_dssp HHHHHHHHHTTCEEEEBCCCSHHHHHHHHHHTCSEEEESC------HHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECC------HHHHHHHHHHC
T ss_conf 9999999987998999889999999999865999999794------99999999977
No 161
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=82.42 E-value=1.8 Score=19.44 Aligned_cols=11 Identities=9% Similarity=0.108 Sum_probs=5.3
Q ss_pred EEECCCHHHHH
Q ss_conf 99767857988
Q gi|254780468|r 570 VIDIDKYKKIN 580 (963)
Q Consensus 570 ~idid~fk~iN 580 (963)
-+++|..+.+.
T Consensus 196 g~r~D~~~~~~ 206 (557)
T 1zja_A 196 GMRFDTVATYS 206 (557)
T ss_dssp EEEETTGGGSS
T ss_pred CEEECCCCCCC
T ss_conf 11210432344
No 162
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, alpha-1,4-glucan-4-glucanohydrolase, thermostability, calcium, sodium; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=82.40 E-value=1.8 Score=19.44 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=7.4
Q ss_pred CCEEEEEEEECCCC
Q ss_conf 73579999855988
Q gi|254780468|r 85 RGDWAVFALANTSD 98 (963)
Q Consensus 85 s~~W~~~~l~N~s~ 98 (963)
...|+...-.++.+
T Consensus 112 ~~~~~~~~~~~~~~ 125 (515)
T 1hvx_A 112 GTEWVDAVEVNPSD 125 (515)
T ss_dssp EEEEEEEEEEETTE
T ss_pred CCCCEEECCCCCCC
T ss_conf 77521111347643
No 163
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=82.21 E-value=1.7 Score=19.57 Aligned_cols=21 Identities=5% Similarity=0.295 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 9999999999607897389999
Q gi|254780468|r 462 DNFRTILDSFVGYRRGRLQYEF 483 (963)
Q Consensus 462 ~~~~~~l~~~~~~~~~~~~~e~ 483 (963)
+.+++.++..-+ ++-++-.++
T Consensus 69 ~df~~lv~~aH~-~GI~VilD~ 89 (405)
T 1ht6_A 69 AELKSLIGALHG-KGVQAIADI 89 (405)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEE
T ss_pred HHHHHHHHHHHH-CCCEEEECC
T ss_conf 999999999998-889999530
No 164
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, structural genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=81.90 E-value=1.6 Score=19.70 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH--CCCEEEEECCCCCHH--HHHHHHHCCCCEEEEEH
Q ss_conf 89999999988199954699997133775099989999999998--898999918877645--48889727998999716
Q gi|254780468|r 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK--IGISLTLDDFGTKCS--LLSYLGYIPFDTVKFNG 885 (963)
Q Consensus 810 f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~--~G~~ialDdFG~g~s--sl~~L~~l~~d~iKiD~ 885 (963)
+.+.+...+..++.. .+..+.-- +++. ++..++ -++.++......+.. .+.. .....+.+-++.
T Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~sf------~~~~----l~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 221 (272)
T 3ch0_A 154 FCDLVVAEIKKAHIT-DRFTLQSF------DVRA----LEYMHSQYPDIKLSYLVETKGTLKKQLEK-LSFTPAVYSPDV 221 (272)
T ss_dssp HHHHHHHHHHHTTCG-GGEEEEES------CHHH----HHHHHHHCTTSEEEEEECSSCCHHHHHTT-SSSCCSEEEEBG
T ss_pred HHHHHHHHHHHCCCC-CCEEEEEC------CHHH----HHHHHHHCCCCEEEEEECCCCCHHHHHHH-HHCCCCEECCCC
T ss_conf 999999988750676-53389738------9899----99999878996199984146522657998-506784971542
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECC
Q ss_conf 88539994579999999999997798099970399899998998099899405
Q gi|254780468|r 886 SLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 (963)
Q Consensus 886 sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~ 938 (963)
.++ -+..++.+|+.|++|++=.|.++++...+.++|||.+.=.
T Consensus 222 ~~~----------~~~~v~~~~~~gl~V~~wTvN~~~~~~~~~~~GvdgI~TD 264 (272)
T 3ch0_A 222 TLV----------SKKDIDAAHKLGMRVIPWTVNTKEEIETLISLGVDGIITD 264 (272)
T ss_dssp GGC----------CHHHHHHHHHTTCEECCBCCCSHHHHHHHHHHTCSEEEES
T ss_pred CCC----------CHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf 108----------9999999998799999988899999999996596999988
No 165
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*
Probab=81.60 E-value=1.9 Score=19.23 Aligned_cols=129 Identities=9% Similarity=0.071 Sum_probs=77.5
Q ss_pred HHHHHHHCCCCHHHEEEE--EEHHHHHCCHHHHHHHHHHHH--HCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEHHHH
Q ss_conf 999998819995469999--713377509998999999999--889899991887764548889727-998999716885
Q gi|254780468|r 814 MQALISKTLYSPSRIKLS--FSESVVMGNPERSRLLLGRLR--KIGISLTLDDFGTKCSLLSYLGYI-PFDTVKFNGSLM 888 (963)
Q Consensus 814 l~~~l~~~~~~~~~l~lE--itE~~~~~~~~~~~~~~~~l~--~~G~~ialDdFG~g~ssl~~L~~l-~~d~iKiD~sfv 888 (963)
....|.+...+- .|.+| +.+.+...+.+....+-+++. ..++.|+.|+.-.....+..+.+. -.|.|.|+.+-+
T Consensus 257 ~~~~L~e~~~~~-~l~IEqPv~~~D~~~~i~~la~l~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~a~d~v~iK~~~~ 335 (413)
T 1kko_A 257 YIASLEKEAQGL-PLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDL 335 (413)
T ss_dssp HHHHTGGGGTTS-CEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEECGGGG
T ss_pred HHHHHHHHCCCC-CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEECHHHC
T ss_conf 999999846887-6454179999655678999999999876048887343255425899999987608688799550323
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEE--CCCHHHHHHHHHCCCCEEECCCCCCC-CCHHH
Q ss_conf 39994579999999999997798099970--39989999899809989940520689-99899
Q gi|254780468|r 889 TGSTEKRIAILRSIIPMAKNIETTIIAKD--IYGEIDIKELTRMGCDYIQDSHVASP-LGFNS 948 (963)
Q Consensus 889 ~~~~~~~~~~v~sii~~a~~lgi~viAeg--VE~~~~~~~l~~~G~d~~QG~~~~~P-~~~~~ 948 (963)
.++.+.. .++.+|+..|+.++.-| -||+.....-..+++-...++.+.|| ++.++
T Consensus 336 GGitea~-----~~~~~a~~~Gi~~~igg~~~Et~~s~~a~~hva~at~~~~~l~kpg~~~d~ 393 (413)
T 1kko_A 336 GGIHNIV-----DAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDE 393 (413)
T ss_dssp SSTHHHH-----HHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHCCSEEECCSCSSSHH
T ss_pred CCHHHHH-----HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf 8999999-----999999986993898588588728899999999843864211489986555
No 166
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis}
Probab=81.02 E-value=2 Score=19.08 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=84.3
Q ss_pred EEEEEECCHH--HHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 4999976977--94391489999999988199954699997133775099989999999998898999918877645488
Q gi|254780468|r 794 IFILINIASK--DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 (963)
Q Consensus 794 ~~vsINlS~~--~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~ 871 (963)
+.+.+.+-.. .-.+.+....+...+++++.. +++++-- -+.+.+..+.+.. -.++++.- ++.-+..
T Consensus 98 ~~l~iEiK~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~S------f~~~~l~~l~~~~--p~~~~~~l---~~~~~~~ 165 (238)
T 3no3_A 98 IRLIFELKSHDTPERNRDAARLSVQMVKRMKLA-KRTDYIS------FNMDACKEFIRLC--PKSEVSYL---NGELSPM 165 (238)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHHHHHTTCG-GGEEEEE------SCHHHHHHHHHHC--TTSCEEEC---SSCSCHH
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEE------CCHHHHHHHHHHC--CCCEEEEE---CCCCCHH
T ss_conf 335111345674244467889899999850667-6508974------8899999999878--99639997---2757867
Q ss_pred HHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHH
Q ss_conf 89727998999716885399945799999999999977980999703998999989980998994052068999899999
Q gi|254780468|r 872 YLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 (963)
Q Consensus 872 ~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~ 951 (963)
.+..+.+..+.++..... .-..+++.+|..|++|.+=.|.++++++.+.++|||.+.=.+ ++.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~g~~v~~wTvn~~~~~~~l~~~GVdgI~TD~------P~~~~~ 231 (238)
T 3no3_A 166 ELKELGFTGLDYHYKVLQ--------SHPDWVKDCKVLGMTSNVWTVDDPKLMEEMIDMGVDFITTDL------PEETQK 231 (238)
T ss_dssp HHHHTTCCEEEEEHHHHH--------HSTTHHHHHHHTTCEEEEECCCSHHHHHHHHHHTCSEEEESC------HHHHHH
T ss_pred HHHHCCCCCCCCHHHHHH--------CCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECC------HHHHHH
T ss_conf 775426540130155532--------369999999986998999777999999999976949999896------999999
Q ss_pred HHHHH
Q ss_conf 99851
Q gi|254780468|r 952 LLKER 956 (963)
Q Consensus 952 ~l~~~ 956 (963)
+|++|
T Consensus 232 ~l~~r 236 (238)
T 3no3_A 232 ILHSR 236 (238)
T ss_dssp HHHHH
T ss_pred HHHHC
T ss_conf 99973
No 167
>3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440}
Probab=80.83 E-value=2 Score=19.03 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEE-EEE
Q ss_conf 0999899999999988989999188776454888972-79989997168853999457999999999999779809-997
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY-IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI-IAK 916 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~-l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~v-iAe 916 (963)
++......+...|+..|+++.. +.+|-..+..+.. -++|.|=+|-.+ .+. +.-.+++.+-.. ..-.+.+ +..
T Consensus 15 D~~~~r~~l~~~L~~~G~~v~~--a~~~~~a~~~l~~~~~~dlii~D~~m-P~~--~G~el~~~ir~~-~~~~~piI~lT 88 (136)
T 3hdv_A 15 DNAVNREALILYLKSRGIDAVG--ADGAEEARLYLHYQKRIGLMITDLRM-QPE--SGLDLIRTIRAS-ERAALSIIVVS 88 (136)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEE--ESSHHHHHHHHHHCTTEEEEEECSCC-SSS--CHHHHHHHHHTS-TTTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCCEEEECCCC-CCC--CHHHHHHHHHHC-CCCCCEEEEEE
T ss_conf 9999999999999987999999--89999999999757999889987989-999--899999999955-79999199998
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 03998999989980998994052068999899999998516
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
|-.+.+......+.|++- |+.||...+++...+++..
T Consensus 89 ~~~~~~~~~~a~~~G~~d----~l~KP~~~~~L~~~v~~~L 125 (136)
T 3hdv_A 89 GDTDVEEAVDVMHLGVVD----FLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp SSCCHHHHHHHHHTTCSE----EEESSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 889999999999869998----9989899999999999999
No 168
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=80.79 E-value=2 Score=19.02 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=13.2
Q ss_pred EEEECCHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 999769779439148999999998819
Q gi|254780468|r 796 ILINIASKDLLDNELCEGMQALISKTL 822 (963)
Q Consensus 796 vsINlS~~~l~~~~f~~~l~~~l~~~~ 822 (963)
.-||+.. -.+..|.+-+++.+.+.+
T Consensus 248 ~KiNi~T--~l~~a~~~~l~~~~~~n~ 272 (305)
T 1rvg_A 248 AKINTDT--DLRLAFTALIREALNKNP 272 (305)
T ss_dssp EEEEECH--HHHHHHHHHHHHHHHHCT
T ss_pred EEEEECH--HHHHHHHHHHHHHHHHCC
T ss_conf 5999781--899999999999998587
No 169
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406}
Probab=80.77 E-value=2 Score=19.02 Aligned_cols=112 Identities=10% Similarity=0.024 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH-----CCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCC--C
Q ss_conf 0999899999999988989999188776454888972-----79989997168853999457999999999999779--8
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY-----IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE--T 911 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~-----l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lg--i 911 (963)
+++....-....++..|...-+.-+.+|...+.+|++ -++|.|=+|-.+ -+-+.-.+++.+-+...... +
T Consensus 17 Dd~~~~~~l~~~l~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~pdliilD~~M---P~~dG~el~~~ir~~~~~~~~~~ 93 (146)
T 3ilh_A 17 DDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINM---PGINGWELIDLFKQHFQPMKNKS 93 (146)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC---SSSCHHHHHHHHHHHCGGGTTTC
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCC---CCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 989999999999997799818999899999999998631027899999984898---99975999999986085124887
Q ss_pred E-EEEEECCCHHHHH-HHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 0-9997039989999-89980998994052068999899999998516
Q gi|254780468|r 912 T-IIAKDIYGEIDIK-ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 912 ~-viAegVE~~~~~~-~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
. ++..+-.+.++.. .....|+++ |+.||+..+++.+.+++-+
T Consensus 94 ~viilts~~~~~~~~~~~~~~g~~~----~l~KP~~~~~L~~~l~~~l 137 (146)
T 3ilh_A 94 IVCLLSSSLDPRDQAKAEASDWVDY----YVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp EEEEECSSCCHHHHHHHHHCSSCCE----EECSSCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 1999978899899999999779988----9979899999999999999
No 170
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=80.63 E-value=2 Score=18.98 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=64.6
Q ss_pred CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCEEECCCCCCCHHHHH-HHHHHHHHHHH
Q ss_conf 489999976785798884277889999999999999834-8997699980641020255669989999-98765554310
Q gi|254780468|r 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIA-DFAIAMRKSIA 642 (963)
Q Consensus 565 ~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~-~~~~~laR~~gdeFaill~~~~~~~~~~-~~~~~~~~~~~ 642 (963)
..++++.||.+|..+-++.+......++....+.+...+ +-+..+-.+-||.+....+......... .......+...
T Consensus 7 ~~tilF~Di~gfT~l~e~~~~~~~~~l~~~~~~~~~~~i~~~gG~i~k~~GD~~la~f~~~~~~~~~~~~~~~~~~~~~~ 86 (189)
T 3mr7_A 7 LCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQAALRCALEIQQAMQQREE 86 (189)
T ss_dssp EEEEEEEEECCCCGGGCCCCHHHHHHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999998357369887699999999999999999999998398899861675203101227899999999999998765
Q ss_pred CEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 11552546799999987764589889989999999999
Q gi|254780468|r 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 (963)
Q Consensus 643 ~~~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~A 680 (963)
..-......+.+...+|-..... ..-..+-++.|..-
T Consensus 87 ~~~~~~~l~i~igi~~g~~~~~~-~~~~G~~VN~AaRl 123 (189)
T 3mr7_A 87 DTPRKERIQYRIGINIGDIVLED-GDIFGDAVNVAARL 123 (189)
T ss_dssp TSCGGGCCCEEEEEEEEEEEECS-SCEESHHHHHHHHH
T ss_pred HCCCCCCCCEEEEEEECCCCCCC-CEEECCHHHHHHHH
T ss_conf 24545663225765641665546-55628264799999
No 171
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=80.60 E-value=2 Score=18.97 Aligned_cols=107 Identities=9% Similarity=0.028 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH-HCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-E
Q ss_conf 099989999999998898999918877645488897-27998999716885399945799999999999977980999-7
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG-YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-K 916 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~-~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-e 916 (963)
+++.........|++.|+.+.. ..+|-..+..+. ..++|.|=+|-.+-.+++ .-.+++.+-+ .-++.||. .
T Consensus 13 D~~~~~~~l~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~dlillD~~mp~g~d--G~e~~~~ir~---~~~~PvI~lT 85 (140)
T 3h5i_A 13 DSKFQAKTIANILNKYGYTVEI--ALTGEAAVEKVSGGWYPDLILMDIELGEGMD--GVQTALAIQQ---ISELPVVFLT 85 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHTTCCCSEEEEESSCSSSCC--HHHHHHHHHH---HCCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHHHHH---CCCCCEEEEE
T ss_conf 9899999999999987999999--8989999999984699989997266533578--9999999985---6999899998
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 0399899998998099899405206899989999999851
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
+-.+.+......+.|++. |+.||...+++...++..
T Consensus 86 ~~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~~ 121 (140)
T 3h5i_A 86 AHTEPAVVEKIRSVTAYG----YVMKSATEQVLITIVEMA 121 (140)
T ss_dssp SSSSCCCCGGGGGSCEEE----EEETTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 999999999999879998----998989999999999999
No 172
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=80.49 E-value=2 Score=18.95 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=9.8
Q ss_pred EEECCHHHHCCCHHHHHHHHHHHHC
Q ss_conf 9976977943914899999999881
Q gi|254780468|r 797 LINIASKDLLDNELCEGMQALISKT 821 (963)
Q Consensus 797 sINlS~~~l~~~~f~~~l~~~l~~~ 821 (963)
-||+.. -.+..|.+-+++.+.+.
T Consensus 251 KiNi~T--~~~~a~~~~~~~~l~~~ 273 (323)
T 2isw_A 251 KINVDS--DSRMAMTGAIRKVFVEH 273 (323)
T ss_dssp EEEECH--HHHHHHHHHHHHHHHHC
T ss_pred EECCCC--HHHHHHHHHHHHHHHHC
T ss_conf 845871--68999999999999868
No 173
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphorylase); purine nucleoside phosphorylase, purine salvage, adenine, transferase; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A*
Probab=80.36 E-value=2 Score=18.94 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=4.0
Q ss_pred CCCCHHHHHHH
Q ss_conf 02303578889
Q gi|254780468|r 752 ISSSEFMLIAE 762 (963)
Q Consensus 752 i~p~~fi~~ae 762 (963)
++-.+++..++
T Consensus 231 lsheeVl~~~~ 241 (283)
T 1cb0_A 231 VSVDRVLKTLK 241 (283)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 79999999999
No 174
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} PDB: 3o6d_A*
Probab=80.18 E-value=2.1 Score=18.87 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=62.9
Q ss_pred CHHHEEE------EEE-HHHHHCCHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHCCCCEEEEE-HHHHCC----
Q ss_conf 9546999------971-337750999899999999988989999188-776454888972799899971-688539----
Q gi|254780468|r 824 SPSRIKL------SFS-ESVVMGNPERSRLLLGRLRKIGISLTLDDF-GTKCSLLSYLGYIPFDTVKFN-GSLMTG---- 890 (963)
Q Consensus 824 ~~~~l~l------Eit-E~~~~~~~~~~~~~~~~l~~~G~~ialDdF-G~g~ssl~~L~~l~~d~iKiD-~sfv~~---- 890 (963)
.|++.|| |+| |....-+.+.....+++|++.|++++| | -.....+.+.+++.+|.|-|. +.|..-
T Consensus 86 kP~qvtLVPe~r~elTTegGld~~~~~L~~~i~~lk~~gIrVSL--FIDPd~~~i~~A~~~Gad~VElhTG~YA~a~~~~ 163 (260)
T 3o6c_A 86 KPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSL--FINPSLEDIEKSKILKAQFIELHTGHYANLHNAL 163 (260)
T ss_dssp CCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEE--EECSCHHHHHHHHHTTCSEEEECCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--EECCCHHHHHHHHHCCCCEEEEECHHHHHHHCCC
T ss_conf 99758976688664324688440067799999986534962899--9689989999984279898998345666442033
Q ss_pred ---------------CCHH------HH--HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Q ss_conf ---------------9945------79--999999999997798099970399899998998
Q gi|254780468|r 891 ---------------STEK------RI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 (963)
Q Consensus 891 ---------------~~~~------~~--~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~ 929 (963)
.+.. .. .-++.....|+++|+.|=|=.==|.+-+..+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~i~~aa~~A~~~GL~VnAGHgLn~~Nl~~l~~ 225 (260)
T 3o6c_A 164 FSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVKPVVK 225 (260)
T ss_dssp HSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTTHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHC
T ss_conf 22110013333222122456677999999999999999987698563689988777899835
No 175
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=79.73 E-value=2.1 Score=18.77 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=14.4
Q ss_pred EEECCCHHHHHHHCCHH-----HHHHHHHHHHHHHHHHC
Q ss_conf 99767857988842778-----89999999999999834
Q gi|254780468|r 570 VIDIDKYKKINDVLGIA-----VGDDVLVSLTRRIGELL 603 (963)
Q Consensus 570 ~idid~fk~iN~~~G~~-----~gD~lL~~ia~~L~~~~ 603 (963)
.+++|..+.+....|.. ....+++.+-..++...
T Consensus 282 GfRlDa~~~~~~~~~~~~~n~pe~~~~~~~~r~~~~~~~ 320 (628)
T 1g5a_A 282 ILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAA 320 (628)
T ss_dssp EEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 531144322001578766787324678888777664108
No 176
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=79.46 E-value=2.2 Score=18.71 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCC-EEEEEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798-099970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET-TIIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi-~viAeg 917 (963)
+|+.........|++.|+++.. +.+|-..+..+.+-++|.|=+|-.+ .+. +.-.+++.+-. .-++ -++..+
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~dlii~D~~l-P~~--~g~e~~~~~~~---~~~~pii~lt~ 82 (123)
T 1xhf_A 11 DELVTRNTLKSIFEAEGYDVFE--ATDGAEMHQILSEYDINLVIMDINL-PGK--NGLLLARELRE---QANVALMFLTG 82 (123)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEE--ESSHHHHHHHHHHSCCSEEEECSSC-SSS--CHHHHHHHHHH---HCCCEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEEECCC-CCC--HHHHHHHHHHH---CCCCCEEEEEE
T ss_conf 9999999999999987999999--8999999999970899999996899-984--49999999985---69997899993
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.|++. |+.||...+++..-+++.
T Consensus 83 ~~~~~~~~~a~~~Ga~d----~l~KP~~~~~L~~~v~~~ 117 (123)
T 1xhf_A 83 RDNEVDKILGLEIGADD----YITKPFNPRELTIRARNL 117 (123)
T ss_dssp CCSHHHHHHHHHHTCSE----EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 59999999999849888----886989999999999999
No 177
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=78.69 E-value=2.3 Score=18.54 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=94.2
Q ss_pred CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCE
Q ss_conf 48999997678579888427788999999999999983489976999806410202556699899999876555431011
Q gi|254780468|r 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 (963)
Q Consensus 565 ~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~laR~~gdeFaill~~~~~~~~~~~~~~~~~~~~~~~ 644 (963)
..++++.||-+|..+-+++|...--+++..+..........+..+...-||.+.++.. ++.....++..+.+.....
T Consensus 215 ~vtV~F~DivgfT~ls~~l~~~~l~~ll~~f~~~~~~i~~~~G~viK~iGD~vl~vf~---~p~~a~~~Al~l~~~~~~~ 291 (407)
T 1y10_A 215 QVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTAPPVWFIKTIGDAVMLVCP---DPAPLLDTVLKLVEVVDTD 291 (407)
T ss_dssp EEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHHHCCTTCEEEEEETTEEEEEES---SHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCC---CHHHHHHHHHHHHHHHHHC
T ss_conf 8999999825859999869999999999999999999998198799871757888079---9799999999999999723
Q ss_pred EEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 55254679999998776458988998999999999999998708974052011111068999999987436410035541
Q gi|254780468|r 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724 (963)
Q Consensus 645 ~~~~~~~i~~t~siGi~~~~~~~~~~~~ll~~Ad~Al~~Ak~~g~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~l~~ 724 (963)
-. .-.+.+.+..|-+.... ++-..+-++.|..-...|+ .+.+.... ...+.+....+...|.+..
T Consensus 292 ~~--~p~lRiGih~G~V~~~~-gdv~G~~VN~AaRL~s~A~---pg~Ilvs~---------~~~~~L~~~~~~~~f~~~~ 356 (407)
T 1y10_A 292 NN--FPRLRAGVASGMAVSRA-GDWFGSPVNVASRVTGVAR---PGAVLVAD---------SVREALGDAPEADGFQWSF 356 (407)
T ss_dssp TT--SCCEEEEEEEEEEEEET-TEEEEHHHHHHHHHHHHCC---TTCEEEEH---------HHHHSCCCC---CCCEEEE
T ss_pred CC--CCCEEEEEEEEEEEEEC-CCEECCHHHHHHHHHCCCC---CCEEEECH---------HHHHHHHCCCCCCCEEEEE
T ss_conf 78--87545554640379547-9576848999999970579---99699889---------9999985234446437897
Q ss_pred CCCCCCCC--CCCCEEEH
Q ss_conf 14688221--44210000
Q gi|254780468|r 725 HPIIRLMD--EEIVGLEA 740 (963)
Q Consensus 725 QPi~~~~~--~~~~~~E~ 740 (963)
.+.+.+++ +.+.-|++
T Consensus 357 ~G~~~LKG~~~pv~vy~v 374 (407)
T 1y10_A 357 AGPRRLRGIRGDVRLFRV 374 (407)
T ss_dssp EEEECCTTCCSCEEEEEE
T ss_pred CCCEECCCCCCCEEEEEE
T ss_conf 476874898885589997
No 178
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas, ligand, substrate; 1.60A {Thermoanaerobacteriumthermosulfurigenes} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=78.61 E-value=0.94 Score=21.64 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=6.2
Q ss_pred CCCCCEEEEEEEEC
Q ss_conf 88873579999855
Q gi|254780468|r 82 IRHRGDWAVFALAN 95 (963)
Q Consensus 82 ~~~s~~W~~~~l~N 95 (963)
.|.++.|+-=...|
T Consensus 69 LGvtaIwL~Pi~e~ 82 (683)
T 3bmv_A 69 MGVTAIWIPQPVEN 82 (683)
T ss_dssp GTCCEEEECCCEEE
T ss_pred CCCCEEEECCCCCC
T ss_conf 39888997964147
No 179
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=78.60 E-value=2.3 Score=18.52 Aligned_cols=10 Identities=0% Similarity=-0.276 Sum_probs=3.5
Q ss_pred EEEEEEEECC
Q ss_conf 5799998559
Q gi|254780468|r 87 DWAVFALANT 96 (963)
Q Consensus 87 ~W~~~~l~N~ 96 (963)
.|..+.....
T Consensus 111 ~~~~~~~~~~ 120 (480)
T 1ud2_A 111 FTEAVQAVQV 120 (480)
T ss_dssp EEEEEEEEEE
T ss_pred CHHHHHHCCC
T ss_conf 3045553026
No 180
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=78.26 E-value=2.3 Score=18.44 Aligned_cols=59 Identities=10% Similarity=0.136 Sum_probs=46.4
Q ss_pred CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCEEECCCC
Q ss_conf 4899999767857988842778899999999999998348-9976999806410202556
Q gi|254780468|r 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILIS 623 (963)
Q Consensus 565 ~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~-~~~~laR~~gdeFaill~~ 623 (963)
..+++++||.+|..+-++++.+..=++|..+-..+.+.+. -+..+.++-||.+..+...
T Consensus 27 ~vtvlF~DI~gfT~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~G~v~k~~GD~~~~~~~~ 86 (219)
T 1wc3_A 27 LITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGA 86 (219)
T ss_dssp EEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESS
T ss_pred EEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf 999999994677899886999999999999999999999986988999966622103578
No 181
>1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=78.23 E-value=2.3 Score=18.44 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCC-EEEEEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798-099970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET-TIIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi-~viAeg 917 (963)
+++.........|++.|+.+.. ..+|...+..+++-++|.|=+|-.+ .+.+ .-.+++.+-. .-.+ -++..+
T Consensus 10 D~~~~~~~l~~~L~~~g~~v~~--a~~~~~a~~~l~~~~~dliilD~~m-P~~d--G~e~~~~~r~---~~~~piI~lt~ 81 (122)
T 1zgz_A 10 DEPVTQARLQSYFTQEGYTVSV--TASGAGLREIMQNQSVDLILLDINL-PDEN--GLMLTRALRE---RSTVGIILVTG 81 (122)
T ss_dssp SSHHHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHHSCCSEEEEESCC-SSSC--HHHHHHHHHT---TCCCEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEEECCC-CCCC--HHHHHHHHHH---CCCCCEEEEEC
T ss_conf 9999999999999987999999--8999999999973999899997898-9977--2899999984---79993999983
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.+.+......+.|++- |+.||...+++..-+++.
T Consensus 82 ~~~~~~~~~a~~~Ga~d----yl~KP~~~~~L~~~i~~~ 116 (122)
T 1zgz_A 82 RSDRIDRIVGLEMGADD----YVTKPLELRELVVRVKNL 116 (122)
T ss_dssp SCCHHHHHHHHHHTCSE----EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
T ss_conf 69999999999869989----997989999999999999
No 182
>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=77.71 E-value=2.4 Score=18.33 Aligned_cols=106 Identities=9% Similarity=0.069 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHCCCEE-EEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEE
Q ss_conf 09998999999999889899-991887764548889727998999716885399945799999999999977980-9997
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISL-TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAK 916 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~i-alDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAe 916 (963)
+++......-..|++.|+.+ +. +.+|-..+..+++-++|.|=+|-.+-.+++ .-.+++.+-. .-++. ++..
T Consensus 17 D~~~~~~~l~~~L~~~G~~v~~~--a~~~~eal~~~~~~~~dlvi~D~~mp~~~d--G~~l~~~lr~---~~~~piI~lt 89 (140)
T 3cg0_A 17 DGRLAAATLRIQLESLGYDVLGV--FDNGEEAVRCAPDLRPDIALVDIMLCGALD--GVETAARLAA---GCNLPIIFIT 89 (140)
T ss_dssp CBHHHHHHHHHHHHHHTCEEEEE--ESSHHHHHHHHHHHCCSEEEEESSCCSSSC--HHHHHHHHHH---HSCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHCCCCEEEEECCCCCCCC--HHHHHHHHHH---CCCCCEEEEE
T ss_conf 99999999999999879989999--789999999998279988999767876798--9999999985---7999689996
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 039989999899809989940520689998999999985
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
+-.+.+......+.|++ .|+.||...+++..-++.
T Consensus 90 ~~~~~~~~~~a~~~Ga~----~yl~KP~~~~~L~~~i~~ 124 (140)
T 3cg0_A 90 SSQDVETFQRAKRVNPF----GYLAKPVAADTLHRSIEM 124 (140)
T ss_dssp CCCCHHHHHHHHTTCCS----EEEEESCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHH
T ss_conf 68999999999987999----899798999999999999
No 183
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419}
Probab=76.88 E-value=2.5 Score=18.16 Aligned_cols=106 Identities=8% Similarity=0.005 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EE
Q ss_conf 09998999999999889899991887764548889727-99899971688539994579999999999997798099-97
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI-PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AK 916 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l-~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Ae 916 (963)
+|+.......+.|++.|+++- -+.+|-..+..+++- |+|.|=+|-.+-.+. +...+++.+-+... ++.+| ..
T Consensus 13 Dd~~~~~~l~~~L~~~G~~v~--~a~s~~eAl~~l~~~~~~dlvi~D~~~p~~~--~G~el~~~ir~~~~--~~pii~~s 86 (132)
T 2rdm_A 13 DEAILLLDFESTLTDAGFLVT--AVSSGAKAIEMLKSGAAIDGVVTDIRFCQPP--DGWQVARVAREIDP--NMPIVYIS 86 (132)
T ss_dssp SSHHHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCCEEEEESCCSSSS--CHHHHHHHHHHHCT--TCCEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCCEEEEEECCCCCC--CHHHHHHHHHHHCC--CCCEEEEE
T ss_conf 999999999999998799999--9899999999998389987998730058999--99999999997498--99689997
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 0399899998998099899405206899989999999851
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
|-.+.+... ..++.. .|+.||...+++...+++-
T Consensus 87 ~~~~~~~~~--~~~~~~----~~L~KP~~~~~L~~~i~~~ 120 (132)
T 2rdm_A 87 GHAALEWAS--NGVPDS----IILEKPFTSAQLITAVSQL 120 (132)
T ss_dssp SSCCTTHHH--HSCTTC----EEEESSCCHHHHHHHHHHH
T ss_pred CCCCHHHHH--HHCCCC----EEEECCCCHHHHHHHHHHH
T ss_conf 569989999--735289----0898999999999999999
No 184
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=75.49 E-value=0.3 Score=25.61 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999703
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegV 918 (963)
+|......+...|++.|+.+.. +.+|-..+..+.+-++|.|=+|-.+ -+-+.-.+++.+-..-...-+ ++..+-
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v~~--a~~~~~a~~~l~~~~~dlii~D~~l---p~~~G~el~~~l~~~~~~~pi-i~~t~~ 84 (124)
T 1dc7_A 11 DDSSIRWVLERALAGAGLTCTT--FENGNEVLAALASKTPDVLLSDIRM---PGMDGLALLKQIKQRHPMLPV-IIMTAH 84 (124)
T ss_dssp SSSSHHHHHHHHHTTTTCCCEE--CCCTTHHHHHSSSCCCSCEEECSCS---SHHHHCSTHHHHHHHCTTSCC-CCBCCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCC---CCCCHHHHHHHHHHHCCCCEE-EEEECC
T ss_conf 9999999999999988999999--8999999999983899999875889---998459999999985899919-999898
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 998999989980998994052068999899999998516
Q gi|254780468|r 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 919 E~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
.+.+......+.|++. |+.||...+++...+++..
T Consensus 85 ~~~~~~~~a~~~G~~d----yl~KP~~~~~L~~~i~~~l 119 (124)
T 1dc7_A 85 SDLDAAVSAYQQGAFD----YLPKPFDIDEAVALVERAI 119 (124)
T ss_dssp TTSTTTTSSCTTCCCC----CBCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 9999999999869980----7839799999999999999
No 185
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=75.37 E-value=2.8 Score=17.87 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=72.5
Q ss_pred HHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHH--------HHC
Q ss_conf 88199954699997133775099989999999998-898999918877645488897279989997168--------853
Q gi|254780468|r 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS--------LMT 889 (963)
Q Consensus 819 ~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~-~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~s--------fv~ 889 (963)
.+.++ +.+++.+.- .+......+++.+|. .++.+..-+..|. .....|.+..+|.||+... .+.
T Consensus 114 v~agv--d~ivID~ah----g~~~~~~~~ik~~r~~~~~~vi~GNVaT~-e~a~~L~~aGAD~VkVGiG~Gs~CtTr~~t 186 (361)
T 3khj_A 114 VEAGV--DVIVLDSAH----GHSLNIIRTLKEIKSKMNIDVIVGNVVTE-EATKELIENGADGIKVGIGPGSICTTRIVA 186 (361)
T ss_dssp HHTTC--SEEEECCSC----CSBHHHHHHHHHHHHHCCCEEEEEEECSH-HHHHHHHHTTCSEEEECSSCCTTCCHHHHT
T ss_pred HHCCC--CEEEEECCC----CCCHHHHHHHHHHHHCCCCCEEECCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCCCCC
T ss_conf 97799--999992898----85148999999986027988686553888-999999971998899734068555520031
Q ss_pred CC-CHHHHHHHHHHHHHHHHCCCEEEEE-ECCCHHHHHHHHHCCCCEEE-CCCCC
Q ss_conf 99-9457999999999999779809997-03998999989980998994-05206
Q gi|254780468|r 890 GS-TEKRIAILRSIIPMAKNIETTIIAK-DIYGEIDIKELTRMGCDYIQ-DSHVA 941 (963)
Q Consensus 890 ~~-~~~~~~~v~sii~~a~~lgi~viAe-gVE~~~~~~~l~~~G~d~~Q-G~~~~ 941 (963)
+. -+.- ..+.-..+.++..++.|||. ||-+..+....-.+|-|.++ |..|+
T Consensus 187 Gvg~pq~-sai~~~~~~~~~~~vpIIADGGi~~~gdi~KAla~GAd~VMlGs~fa 240 (361)
T 3khj_A 187 GVGVPQI-TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILA 240 (361)
T ss_dssp CBCCCHH-HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTT
T ss_pred CCCCCHH-HHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCHHHHCCCEE
T ss_conf 5578368-89999999860478877955883646719999873884000055002
No 186
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=74.97 E-value=0.69 Score=22.70 Aligned_cols=171 Identities=12% Similarity=0.025 Sum_probs=88.8
Q ss_pred CCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCEEECCC--CCCC--HHHHHHHHHH
Q ss_conf 8984899999767857988842778899999999999998348-997699980641020255--6699--8999998765
Q gi|254780468|r 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILI--SENN--SLKIADFAIA 636 (963)
Q Consensus 562 ~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~-~~~~laR~~gdeFaill~--~~~~--~~~~~~~~~~ 636 (963)
.....++++.||-+|..+-++++.+..-++|..+-+.+.+.+. .+..+-++-||.+..+.. .... ...+..++..
T Consensus 7 ~~~~vtilF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~~a~fg~p~~~~~~~~~a~~~~~~ 86 (204)
T 1yk9_A 7 KYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALADFALD 86 (204)
T ss_dssp CCSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCTTHHHHHHTHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 67868999986377159887499999999999999998755652797899861451003169985325699999988888
Q ss_pred HHHHHHCEEEE--CCEEEEEEEEEEEEECCCCC------CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
Q ss_conf 55431011552--54679999998776458988------99899999999999999870897405201111106899999
Q gi|254780468|r 637 MRKSIAMPINL--LEREITVTASIGFASWTSSK------ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708 (963)
Q Consensus 637 ~~~~~~~~~~~--~~~~i~~t~siGi~~~~~~~------~~~~~ll~~Ad~Al~~Ak~~g~~~~~~~~~~~~~~~~~~~~ 708 (963)
+.+........ ....+.+.++.|-+.....+ .-..+.++.|..... ....+.+...
T Consensus 87 ~~~~~~~~~~~~~~~l~~riGIh~G~v~~g~iG~~~~~~~v~G~~Vn~Aarle~---~a~~~~ilvs------------- 150 (204)
T 1yk9_A 87 MTNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMES---TDSVGQIQVP------------- 150 (204)
T ss_dssp HHHHTTTCCSSSCCCCCEEEEEEEECEEECCCCSSSCCCCEEEHHHHHTTHHHH---SCSTTCEEBC-------------
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCEEECCCCCCCCCCEEECHHHHHHHHHH---CCCCCEEEEC-------------
T ss_conf 888887766521887128877765263362145763010235549999999981---5899879985-------------
Q ss_pred HHHHHHHHHCCHHHHHCCCCCCCC-CCCCEEEHHCCCCCCCC
Q ss_conf 998743641003554114688221-44210000000035775
Q gi|254780468|r 709 EDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKW 749 (963)
Q Consensus 709 ~~l~~al~~~~~~l~~QPi~~~~~-~~~~~~E~l~R~~~~~~ 749 (963)
++..+.+. ++|...+...+.+++ +...-|+++-|...++-
T Consensus 151 ~~t~~~l~-~~~~~~~~g~~~lKG~~~~~~y~~~~~~~~~~p 191 (204)
T 1yk9_A 151 DEVYERLK-DDFVLRERGHINVKGKGVMRTWYLIGRKVAADP 191 (204)
T ss_dssp HHHHHCCT-TCEEEEECCCCCCSSSSSCCCCEEEEEECCC--
T ss_pred HHHHHHHC-CCCEEEEECCEEECCCCCEEEEEEECCCCCCCC
T ss_conf 89999735-781699957689617984179999654678992
No 187
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=74.54 E-value=2.1 Score=18.87 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=7.2
Q ss_pred CCEEEEEECCHH
Q ss_conf 984999976977
Q gi|254780468|r 792 PPIFILINIASK 803 (963)
Q Consensus 792 ~~~~vsINlS~~ 803 (963)
..+.|.+|.|..
T Consensus 679 ~~~lV~~N~~~~ 690 (750)
T 1bf2_A 679 NSIYVAYNGWSS 690 (750)
T ss_dssp SCEEEEEECSSS
T ss_pred CEEEEEECCCCC
T ss_conf 839999989888
No 188
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=74.52 E-value=2.9 Score=17.71 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 67998999999999
Q gi|254780468|r 767 IKAINLFMLERIAR 780 (963)
Q Consensus 767 ~~~ld~~vl~~a~~ 780 (963)
+.+|+.|--.++++
T Consensus 454 ~~~lG~W~~~~a~~ 467 (527)
T 1gcy_A 454 VSQLGNWSPAAALR 467 (527)
T ss_dssp --------------
T ss_pred HHHCCCCCHHCCCC
T ss_conf 15439978100346
No 189
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=74.21 E-value=2.9 Score=17.65 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=6.1
Q ss_pred CEEEEEECCHH
Q ss_conf 84999976977
Q gi|254780468|r 793 PIFILINIASK 803 (963)
Q Consensus 793 ~~~vsINlS~~ 803 (963)
.+.|.+|.|..
T Consensus 606 ~~lv~~N~~~~ 616 (657)
T 2wsk_A 606 RFLIAINATLE 616 (657)
T ss_dssp TEEEEEECSSS
T ss_pred EEEEEEECCCC
T ss_conf 19999918898
No 190
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=73.95 E-value=3 Score=17.61 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EE
Q ss_conf 09998999999999889899991887764548889727998999716885399945799999999999977980999-70
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA-KD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA-eg 917 (963)
+|..........|++.|+.+.. +.+|-..+..++.-++|.|-++ + .+.-.+++.+-+ +.-.+.||. .+
T Consensus 26 Dd~~~~~~l~~~L~~~G~~v~~--a~~g~~al~~l~~~~~DlviLp-----~--~~G~ell~~ir~--~~~~~piiilT~ 94 (137)
T 2pln_A 26 KNSVLGGEIEKGLNVKGFMADV--TESLEDGEYLMDIRNYDLVMVS-----D--KNALSFVSRIKE--KHSSIVVLVSSD 94 (137)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE--ESCHHHHHHHHHHSCCSEEEEC-----S--TTHHHHHHHHHH--HSTTSEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHCCCCCEEEEE-----C--CCCHHHHHHHHH--CCCCCCEEEEEC
T ss_conf 9999999999999988999999--8999999999972899999982-----7--876379999996--288997599964
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCC-CHHHHHHHHHH
Q ss_conf 399899998998099899405206899-98999999985
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPL-GFNSILKLLKE 955 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~-~~~~~~~~l~~ 955 (963)
-++.++.....+.|+|- |+.||. +.+++..-++.
T Consensus 95 ~~~~~~~~~al~~Gadd----yl~KPf~~~~eL~aRI~a 129 (137)
T 2pln_A 95 NPTSEEEVHAFEQGADD----YIAKPYRSIKALVARIEA 129 (137)
T ss_dssp SCCHHHHHHHHHTTCSE----EEESSCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCE----EEECCCCCHHHHHHHHHH
T ss_conf 89999999999869988----997999998999999999
No 191
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Probab=73.85 E-value=3 Score=17.59 Aligned_cols=19 Identities=5% Similarity=0.097 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999887
Q gi|254780468|r 769 AINLFMLERIARDIISWRD 787 (963)
Q Consensus 769 ~ld~~vl~~a~~~l~~~~~ 787 (963)
.+-.+++.++++.-++.++
T Consensus 630 ~~k~~~~~~~L~~R~~~p~ 648 (720)
T 1iv8_A 630 RIKMYLTYXLLSLRKQLAE 648 (720)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHCHH
T ss_conf 3789999999998664622
No 192
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=73.48 E-value=3 Score=17.53 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=15.8
Q ss_pred EEEEECCCHHHHHHHCCHH-----HHHHHHHHHHHHHHHHC
Q ss_conf 9999767857988842778-----89999999999999834
Q gi|254780468|r 568 VMVIDIDKYKKINDVLGIA-----VGDDVLVSLTRRIGELL 603 (963)
Q Consensus 568 l~~idid~fk~iN~~~G~~-----~gD~lL~~ia~~L~~~~ 603 (963)
+=.+++|....+....|.. ..-.+++.+-..++...
T Consensus 274 vDGfRlDa~~~l~k~~g~~~~n~~e~h~~~~~~r~~~~~~~ 314 (644)
T 3czg_A 274 VEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVA 314 (644)
T ss_dssp EEEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 86540354232014567533456113578998887765108
No 193
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=72.93 E-value=3.1 Score=17.43 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHC-CCCEEEEEHHHHCCCCH-HHHHHHHHHHHHHHHCCC-EEEE
Q ss_conf 9998999999999889-899991887764548889727-99899971688539994-579999999999997798-0999
Q gi|254780468|r 840 NPERSRLLLGRLRKIG-ISLTLDDFGTKCSLLSYLGYI-PFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIET-TIIA 915 (963)
Q Consensus 840 ~~~~~~~~~~~l~~~G-~~ialDdFG~g~ssl~~L~~l-~~d~iKiD~sfv~~~~~-~~~~~v~sii~~a~~lgi-~viA 915 (963)
+.......-..|.+.| +.+. -..+|-..+..+++. ++|.|=+|-.+- +. +...+++.+-+-...-++ -++.
T Consensus 13 ~~~~r~~l~~~L~~~G~~~v~--~a~~g~eal~~l~~~~~~dlii~D~~mP---~~~~g~~l~~~ir~~~~~~~~piI~l 87 (140)
T 3lua_A 13 FEYEREKTKIIFDNIGEYDFI--EVENLKKFYSIFKDLDSITLIIMDIAFP---VEKEGLEVLSAIRNNSRTANTPVIIA 87 (140)
T ss_dssp CHHHHHHHHHHHHHHCCCEEE--EECSHHHHHTTTTTCCCCSEEEECSCSS---SHHHHHHHHHHHHHSGGGTTCCEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEE--EECCHHHHHHHHHCCCCCCEEEEECCCC---CCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 999999999999867990899--9899999999997389985999868999---99988899998764424689988998
Q ss_pred EECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 703998999989980998994052068999899999998516
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
.|-.+.+......+.|++- |+.||...+++...+++..
T Consensus 88 T~~~~~~~~~~~~~~G~~d----~l~KP~~~~~L~~~i~~~L 125 (140)
T 3lua_A 88 TKSDNPGYRHAALKFKVSD----YILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp ESCCCHHHHHHHHHSCCSE----EEESSCCTTHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
T ss_conf 2799999999999869989----9989899999999999999
No 194
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics, MCSG, PSI-2, protein structure initiative, midwest center for structural genomics; 2.60A {Shigella flexneri}
Probab=72.35 E-value=3.2 Score=17.33 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=47.2
Q ss_pred HHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCC
Q ss_conf 8889727998999716885399945799999999999977980999703998999989980998994052
Q gi|254780468|r 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 (963)
Q Consensus 870 l~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~ 939 (963)
.....++.++.|-++...+. +..++.+|+.|++|.+=.|.++++.+.+.++|||.+.=.+
T Consensus 177 ~~~~~~~~~~~v~~~~~~~~----------~~~v~~~~~~g~~v~vwTVn~~~~~~~~~~~GVdgI~TD~ 236 (247)
T 2otd_A 177 RELTARLGCVSIHLNHKLLD----------KARVMQLKDAGLRILVYTVNKPQHAAELLRWGVDCICTDA 236 (247)
T ss_dssp HHHHHHHTCSEEEEEGGGCC----------HHHHHHHHHTTCEEEEECCCCHHHHHHHHHHTCSEEEESC
T ss_pred HHHHHHCCCEEEECCCCCCC----------HHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECC
T ss_conf 88877429338753423389----------9999999987999999826999999999967989999798
No 195
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=72.15 E-value=3.2 Score=17.30 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=6.8
Q ss_pred EEEEEECCCEEE
Q ss_conf 699980641020
Q gi|254780468|r 608 ILARLSGNRFGI 619 (963)
Q Consensus 608 ~laR~~gdeFai 619 (963)
.-.=+.|+||+.
T Consensus 450 iP~iy~GdE~G~ 461 (618)
T 3m07_A 450 IPLLFMGEEYGE 461 (618)
T ss_dssp EEEEETTGGGTC
T ss_pred CCEEECCHHHCC
T ss_conf 548952754458
No 196
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica}
Probab=72.07 E-value=3.3 Score=17.29 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=84.1
Q ss_pred HCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf 43914899999999881999546999971337750999899999999988--9899991887764548889727998999
Q gi|254780468|r 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI--GISLTLDDFGTKCSLLSYLGYIPFDTVK 882 (963)
Q Consensus 805 l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~--G~~ialDdFG~g~ssl~~L~~l~~d~iK 882 (963)
..+.+-...+.+.+.+.++. ++|+|=+. +.+.+.++.+++. .+.++.--.=+ -..+....+...+++=
T Consensus 21 ~~~~~~~~~i~~aL~~~Gi~----~iEitl~~-----~~a~~~i~~l~~~~p~~~vGaGTV~~-~~~~~~a~~aGA~Fiv 90 (217)
T 3lab_A 21 IDDLVHAIPMAKALVAGGVH----LLEVTLRT-----EAGLAAISAIKKAVPEAIVGAGTVCT-ADDFQKAIDAGAQFIV 90 (217)
T ss_dssp CSCGGGHHHHHHHHHHTTCC----EEEEETTS-----TTHHHHHHHHHHHCTTSEEEEECCCS-HHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHHHHHCCCC----EEEEECCC-----CHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHCCCEEE
T ss_conf 89999999999999987998----89996899-----06999999999868997599996242-7999999972788877
Q ss_pred EEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-----EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 716885399945799999999999977980-----999703998999989980998994052068999899999998516
Q gi|254780468|r 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETT-----IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 883 iD~sfv~~~~~~~~~~v~sii~~a~~lgi~-----viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~ 957 (963)
+|. +-..+++.|++.++. .+..||-|..+....+++||+.+.=| =+..+....+.+-++.-+
T Consensus 91 ---------sP~---~~~~v~~~a~~~~ip~~~~~~~iPG~~TptEi~~A~~~G~~~vK~F-PA~~~gg~~~lk~l~~p~ 157 (217)
T 3lab_A 91 ---------SPG---LTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQAGITQLKCF-PASAIGGAKLLKAWSGPF 157 (217)
T ss_dssp ---------ESS---CCHHHHHHHHHHHHHCSCCCEEEEEECSHHHHHHHHHTTCCEEEET-TTTTTTHHHHHHHHHTTC
T ss_pred ---------CCC---CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC-CCCCCCCHHHHHHHCCCC
T ss_conf ---------688---9999999999849864457545278588679999997699959964-011237899998620358
Q ss_pred CCC
Q ss_conf 110
Q gi|254780468|r 958 PLV 960 (963)
Q Consensus 958 ~~~ 960 (963)
|-.
T Consensus 158 p~~ 160 (217)
T 3lab_A 158 PDI 160 (217)
T ss_dssp TTC
T ss_pred CCC
T ss_conf 998
No 197
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=71.98 E-value=3.3 Score=17.27 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=8.3
Q ss_pred CCCEEEEEECCHH
Q ss_conf 9984999976977
Q gi|254780468|r 791 MPPIFILINIASK 803 (963)
Q Consensus 791 ~~~~~vsINlS~~ 803 (963)
+..+.|.+|.|..
T Consensus 656 ~~~~lV~~N~~~~ 668 (718)
T 2vr5_A 656 DDSFLIILNANPN 668 (718)
T ss_dssp CCEEEEEEECCSS
T ss_pred CCEEEEEECCCCC
T ss_conf 9869999968998
No 198
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=71.93 E-value=3.3 Score=17.26 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=46.8
Q ss_pred HHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCEEECCCC
Q ss_conf 55338984899999767857988842778899999999999998348-9976999806410202556
Q gi|254780468|r 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILIS 623 (963)
Q Consensus 558 ~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~-~~~~laR~~gdeFaill~~ 623 (963)
+.+.+..+.++++.||.+|..+-+..+. ...++|......+.+.+. .+..+..+-||.|.++.+.
T Consensus 5 ~p~~~~~~vtilF~DI~gfT~l~~~~~~-~~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~~~~f~~ 70 (235)
T 1fx2_A 5 APKEPTDPVTLIFTDIESSTALWAAHPD-LMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKS 70 (235)
T ss_dssp SCCCTTSCEEEEEEEETTHHHHHHHCTT-THHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESC
T ss_pred CCCCCCCCEEEEEEEECCHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCC
T ss_conf 9999889699999864587999986999-99999999999999999867909999738779997289
No 199
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H}
Probab=71.29 E-value=3.4 Score=17.16 Aligned_cols=108 Identities=10% Similarity=0.055 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEE
Q ss_conf 0999899999999988989999188776454888972799899971688539994579999999999997798099-970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII-AKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi-Aeg 917 (963)
++..........|++.|+.+.. .+|...+..+.+-++|.|=+|-.+ -+-+.-.+++.+-+... ...+| ..|
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v~a---~~~~eal~~l~~~~~dlillD~~m---P~~dG~el~~~lr~~~~--~~~iiils~ 82 (135)
T 3eqz_A 11 DDTLTCNLLKTIVEPIFGNVEA---FQHPRAFLTLSLNKQDIIILDLMM---PDMDGIEVIRHLAEHKS--PASLILISG 82 (135)
T ss_dssp SCHHHHHHHHHHHTTTCSCEEE---ESCHHHHTTSCCCTTEEEEEECCT---TTTHHHHHHHHHHHTTC--CCEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEE---CCHHHHHHHHHCCCCCEEEEECCC---CCCCHHHHHHHHHHCCC--CCCEEEEEC
T ss_conf 9999999999999978998999---178999999865899999985999---99989999999995299--997999983
Q ss_pred CCCH---HHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 3998---99998998099899405206899989999999851
Q gi|254780468|r 918 IYGE---IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~---~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
..+. ........+|. .+-+ |+.||...+++...+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~-g~~d-~l~KP~~~~~L~~~l~~~ 122 (135)
T 3eqz_A 83 YDSGVLHSAETLALSCGL-NVIN-TFTKPINTEVLTCFLTSL 122 (135)
T ss_dssp SCHHHHHHHHHHHHHTTC-EEEE-EEESSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCC-CCCE-EEECCCCHHHHHHHHHHH
T ss_conf 576544009999999559-9987-997989999999999999
No 200
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=70.38 E-value=3.5 Score=17.02 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECC
Q ss_conf 989999999998898999918877645488897279-98999716885399945799999999999977980-9997039
Q gi|254780468|r 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP-FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKDIY 919 (963)
Q Consensus 842 ~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~-~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAegVE 919 (963)
......++++=+.|+.+. -+.+|-..+..+.+-+ +|.|=+|-.+ .++ +.-.+++.+-+. .-.+. ++..|-.
T Consensus 14 ~~~~~~l~~~L~~~~~v~--~a~~g~eAl~~l~~~~~~dlvi~D~~m-P~~--~G~ell~~ir~~--~~~~~vI~lt~~~ 86 (151)
T 3kcn_A 14 YSLLNTLKRNLSFDFEVT--TCESGPEALACIKKSDPFSVIMVDMRM-PGM--EGTEVIQKARLI--SPNSVYLMLTGNQ 86 (151)
T ss_dssp HHHHHHHHHHHTTTSEEE--EESSHHHHHHHHHHSCCCSEEEEESCC-SSS--CHHHHHHHHHHH--CSSCEEEEEECGG
T ss_pred HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEECCC-CCC--CCHHHHHHHHHH--CCCCCEEEEECCC
T ss_conf 999999999997799899--988999999999856997099983898-898--708999999986--8999689998259
Q ss_pred CHHHHHHHHHCC-CCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 989999899809-989940520689998999999985
Q gi|254780468|r 920 GEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 920 ~~~~~~~l~~~G-~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
+.+.....-+.| ++ .|+.||...+++...++.
T Consensus 87 d~~~~~~a~~~G~a~----dyl~KP~~~~~L~~~v~~ 119 (151)
T 3kcn_A 87 DLTTAMEAVNEGQVF----RFLNKPCQMSDIKAAINA 119 (151)
T ss_dssp GHHHHHHHHHHTCCS----EEEESSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCC----CEEECCCCHHHHHHHHHH
T ss_conf 999999999678987----378699999999999999
No 201
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=70.18 E-value=3.5 Score=16.98 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999875533
Q gi|254780468|r 548 LDRLTTILDLSATD 561 (963)
Q Consensus 548 ~~~l~~~l~~~~~~ 561 (963)
.+.+...+..++..
T Consensus 150 l~~~~~~v~~ak~~ 163 (423)
T 3ivs_A 150 IDSATEVINFVKSK 163 (423)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999887505
No 202
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=69.69 E-value=3.6 Score=16.91 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=5.4
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9768999999999996
Q gi|254780468|r 457 HINDRDNFRTILDSFV 472 (963)
Q Consensus 457 hp~D~~~~~~~l~~~~ 472 (963)
|.-|.+..+++++...
T Consensus 33 HaGD~~~m~~tv~lA~ 48 (252)
T 1xw8_A 33 HAGDAQIMQACVREAI 48 (252)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 5677999999999999
No 203
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} SCOP: c.6.2.5
Probab=69.57 E-value=3.6 Score=16.89 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHHHHC
Q ss_conf 97689999999999960
Q gi|254780468|r 457 HINDRDNFRTILDSFVG 473 (963)
Q Consensus 457 hp~D~~~~~~~l~~~~~ 473 (963)
|.-|.+..++++....+
T Consensus 38 HAGD~~~m~~tv~lA~~ 54 (250)
T 2dfa_A 38 HGGSPGRILEAVRLAKA 54 (250)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 56779999999999998
No 204
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiative, PSI-2; 2.81A {Galdieria sulphuraria}
Probab=69.44 E-value=3.7 Score=16.87 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHC--CCEEEE--ECCCC--CHHHHHHHHHCCCCE
Q ss_conf 914899999999881999546999971337750999899999999988--989999--18877--645488897279989
Q gi|254780468|r 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI--GISLTL--DDFGT--KCSLLSYLGYIPFDT 880 (963)
Q Consensus 807 ~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~--G~~ial--DdFG~--g~ssl~~L~~l~~d~ 880 (963)
.....+.+..++++++.. +++++.- -+++.+ +++++. +++++. +.++. ...-.........+.
T Consensus 124 ~~~~~~~v~~~i~~~~~~-~rv~~~S------f~~~~l----~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (258)
T 2o55_A 124 ESGDHQRLLLLVEKYHMQ-ERVDYCS------FHHEAL----AHLKALCPDVKITYLFNYMGQPTPLDFVEQACYGDANG 192 (258)
T ss_dssp TSSHHHHHHHHHHTTTCG-GGEEEEE------SSHHHH----HHHHHHCTTCEEEEECCTTSCCCCTTHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHCCCC-CCCCCCC------CCHHHH----HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCE
T ss_conf 027899999999971742-2576566------999999----99998789971999960466678677999988526747
Q ss_pred EEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCHHHHHHHHHCCCCEEECCC
Q ss_conf 99716885399945799999999999977980999703----998999989980998994052
Q gi|254780468|r 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI----YGEIDIKELTRMGCDYIQDSH 939 (963)
Q Consensus 881 iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegV----E~~~~~~~l~~~G~d~~QG~~ 939 (963)
|-++..++. +..++.+|+.|++|.+=.| +++++...+.++|||.+.=.+
T Consensus 193 i~~~~~~l~----------~~~v~~~~~~Gl~v~vwTv~~~~n~~~~~~~l~~~GVdgI~TD~ 245 (258)
T 2o55_A 193 VSMLFHYLT----------KEQVCTAHEKGLSVTVWMPWIFDDSEEDWKKCLELQVDLICSNY 245 (258)
T ss_dssp EEEEGGGCC----------HHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHTCSEEEESC
T ss_pred EECCCCCCC----------HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 741331189----------99999999869989999477889859999999968999999798
No 205
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=69.08 E-value=3.7 Score=16.81 Aligned_cols=45 Identities=18% Similarity=0.004 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999870897405201111106899999998743641003554
Q gi|254780468|r 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723 (963)
Q Consensus 677 Ad~Al~~Ak~~g~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~l~ 723 (963)
.+..+..+|+-|-+.++..+........ ++..-++.+.++ .|.+.
T Consensus 87 ~~~y~~~~~~lGf~~IEiSdG~i~i~~~-~~~~~I~~a~~~-G~~V~ 131 (251)
T 1qwg_A 87 FDEFLNECEKLGFEAVEISDGSSDISLE-ERNNAIKRAKDN-GFMVL 131 (251)
T ss_dssp HHHHHHHHHHHTCCEEEECCSSSCCCHH-HHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHH-HHHHHHHHHHHC-CCEEE
T ss_conf 8999999998599889973984468989-999999999858-99895
No 206
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (mtsase); 1.90A {Sulfolobus tokodaii str}
Probab=68.71 E-value=3.8 Score=16.76 Aligned_cols=46 Identities=9% Similarity=-0.070 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4688221442100000000357755302303578889779967998999999999999988
Q gi|254780468|r 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 (963)
Q Consensus 726 Pi~~~~~~~~~~~E~l~R~~~~~~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~~ 786 (963)
-.|+-.+.+.+-|....++..+. .-+.| .+-.+++.++++.-+..+
T Consensus 590 slvdpdnrrpvd~~~~~~~l~~~------------~~~~g---~~k~~~~~~~l~~r~~~~ 635 (704)
T 3hje_A 590 LLTDPDNRRPVVFSELPKRYEEG------------LFNNG---RIKAYVTKVLLNLRKSMK 635 (704)
T ss_dssp CCSTTGGGSCCCCCCCCCSCCGG------------GTTTS---THHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHCC------------CCCCC---HHHHHHHHHHHHHHHHCH
T ss_conf 26699888988868888877535------------78875---489999999999988697
No 207
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae}
Probab=68.61 E-value=3.8 Score=16.74 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCE
Q ss_conf 999999999983489976999806410
Q gi|254780468|r 591 VLVSLTRRIGELLKFPDILARLSGNRF 617 (963)
Q Consensus 591 lL~~ia~~L~~~~~~~~~laR~~gdeF 617 (963)
-+++.++.|++.....-.++=++|.-+
T Consensus 94 ~~~e~a~~i~~~~~~~P~IgIIlGSGL 120 (373)
T 2p4s_A 94 TLQEIATYLLERTELRPKVGIICGSGL 120 (373)
T ss_dssp HHHHHHHHHHHHCCCCCSEEEEECTTC
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf 999999999985799986899914867
No 208
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides}
Probab=68.24 E-value=3.9 Score=16.69 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHCCCEE-EEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 09998999999999889899-99188776454888972799899971688539994579999999999997798099970
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISL-TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~i-alDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAeg 917 (963)
+|........+.|++.|+++ ...+ +|-..+..+.+-++|.|=+|-.+-.++|. -.+++.|-+ ..++.+|+=-
T Consensus 168 D~~~~~~~l~~~L~~~g~~v~~~a~--~~~~a~~~~~~~~~Dlil~Di~mp~~mdG--~~~~~~ir~---~~~~piI~lT 240 (286)
T 3n0r_A 168 DEPVIAADIEALVRELGHDVTDIAA--TRGEALEAVTRRTPGLVLADIQLADGSSG--IDAVKDILG---RMDVPVIFIT 240 (286)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHHCCCSEEEEESCCTTSCCT--TTTTHHHHH---HTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECC--CHHHHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHHHHH---CCCCCEEEEE
T ss_conf 8799999999999976997488613--28999999751799889981788789889--999999986---6998389995
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
-.. ++.....+.|++ .|+.||...+++..-+++-
T Consensus 241 a~~-~~~~~~~~~g~~----~yl~KP~~~~~L~~~i~~a 274 (286)
T 3n0r_A 241 AFP-ERLLTGERPEPT----FLITKPFQPETVKAAIGQA 274 (286)
T ss_dssp SCG-GGGCCSSSCCCS----SEEESSCCHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHCCCC----EEEECCCCHHHHHHHHHHH
T ss_conf 688-899999986999----8998989999999999999
No 209
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=68.08 E-value=3.9 Score=16.67 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=30.3
Q ss_pred EEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEH---HHH-----HCCHHHHHHHHHHHHHCC
Q ss_conf 999769779439148999999998819995469999713---377-----509998999999999889
Q gi|254780468|r 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE---SVV-----MGNPERSRLLLGRLRKIG 855 (963)
Q Consensus 796 vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE---~~~-----~~~~~~~~~~~~~l~~~G 855 (963)
+-++.|. +-.+.+|+.-+.+.-...+. +-|.+|... .+. .-.++++..+++.+++.+
T Consensus 195 vi~D~sh-s~G~r~~v~~la~aa~a~G~--dGlfiE~Hp~P~~A~sD~~~~l~l~~l~~ll~~i~~i~ 259 (262)
T 1zco_A 195 IIVDPSH-PAGRRSLVIPLAKAAYAIGA--DGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELEALG 259 (262)
T ss_dssp EEECSST-TTCSGGGHHHHHHHHHHTTC--SEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHHHTT
T ss_pred EECCCCC-CCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 2117987-66667679999999998299--98999818780217887413679999999999999986
No 210
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=67.64 E-value=4 Score=16.60 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=88.4
Q ss_pred HHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHCCCCEEEEE---HHHH
Q ss_conf 9999998819995469999713377509998999999999889899991-88776454888972799899971---6885
Q gi|254780468|r 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD-DFGTKCSLLSYLGYIPFDTVKFN---GSLM 888 (963)
Q Consensus 813 ~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialD-dFG~g~ssl~~L~~l~~d~iKiD---~sfv 888 (963)
++.... +.+ ++.+++-. |++ + +...+.++.+++.|++.+|- +-+|-.+.+..+... +|+|=+= +.|-
T Consensus 72 ~i~~~~-~~g--a~~i~~H~-Ea~--~--~~~~~~i~~i~~~g~~~Gialnp~T~~~~i~~~l~~-~D~vl~M~V~pG~~ 142 (231)
T 3ctl_A 72 YIAQLA-RAG--ADFITLHP-ETI--N--GQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHK-ADKITVMTVDPGFA 142 (231)
T ss_dssp THHHHH-HHT--CSEEEECG-GGC--T--TTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGG-CSEEEEESSCTTCS
T ss_pred HHHHHH-HCC--CCEEEEEH-HHH--C--CCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCC-CCEEEEEEECCCCC
T ss_conf 999998-669--98799632-543--0--359999999997798799995699970565523133-28899957768878
Q ss_pred CC-CCHHHHHHHHHHHHHH--HHCCCEEEEEECCCHHHHHHHHHCCCCEE-EC--CCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 39-9945799999999999--97798099970399899998998099899-40--520689998999999985161102
Q gi|254780468|r 889 TG-STEKRIAILRSIIPMA--KNIETTIIAKDIYGEIDIKELTRMGCDYI-QD--SHVASPLGFNSILKLLKERFPLVK 961 (963)
Q Consensus 889 ~~-~~~~~~~~v~sii~~a--~~lgi~viAegVE~~~~~~~l~~~G~d~~-QG--~~~~~P~~~~~~~~~l~~~~~~~~ 961 (963)
.. ..++.-.-++.+-.+. +..++.+.+.|==+.+....+.+.|+|.+ .| ..|.++-+.++..+.+++..-..|
T Consensus 143 Gq~f~~~~l~ki~~l~~~~~~~~~~~~I~VDGGIn~e~i~~l~~aGad~~V~Gss~iF~~~~~~~~~~~~l~~~i~~a~ 221 (231)
T 3ctl_A 143 GQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILAAK 221 (231)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7532588999999999999834999369998998899999999869899998818875899999999999999999988
No 211
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=66.83 E-value=4.1 Score=16.48 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 89989999999999999
Q gi|254780468|r 667 KITSSEMLKNAELAMYH 683 (963)
Q Consensus 667 ~~~~~~ll~~Ad~Al~~ 683 (963)
..+.++++..-..++..
T Consensus 115 P~~~~~l~~~i~~~l~~ 131 (205)
T 1s8n_A 115 PFSISDLIPAIELAVSR 131 (205)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 99999999999999986
No 212
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=66.55 E-value=4.1 Score=16.44 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC----HHHHCCCHHHHHHHHHHHHCCCCH
Q ss_conf 5302303578889779967998999999999999988715899849999769----779439148999999998819995
Q gi|254780468|r 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA----SKDLLDNELCEGMQALISKTLYSP 825 (963)
Q Consensus 750 ~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~~~~~~~~~~~vsINlS----~~~l~~~~f~~~l~~~l~~~~~~~ 825 (963)
|..+-.+++...++.|.-..+|..-+..+...+.+ ...+.+ +..|-. ......++|+......-.+++..+
T Consensus 235 GN~~tE~lv~~l~~~g~~~~~d~~~l~~~~~~~v~---~~~~~~--~~~~~p~vg~~~a~~H~~~~~~~~~~a~~~~~~~ 309 (345)
T 1nvm_A 235 GNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVR---PLQDRP--VRVDRETLGLGYAGVYSSFLRHAEIAAAKYNLKT 309 (345)
T ss_dssp CBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTG---GGCSSC--CSCCHHHHHHHHHTCCTTHHHHHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH---HHCCCC--CCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf 86209999999995599789898999999999999---970999--9998057736652227304468999999739986
Q ss_pred HHEE
Q ss_conf 4699
Q gi|254780468|r 826 SRIK 829 (963)
Q Consensus 826 ~~l~ 829 (963)
..+.
T Consensus 310 ~e~~ 313 (345)
T 1nvm_A 310 LDIL 313 (345)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 213
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=65.92 E-value=4.2 Score=16.35 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 066999999999999875533898489999976785798884277889999999999999834
Q gi|254780468|r 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 (963)
Q Consensus 541 L~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~ 603 (963)
-..|+.+.+.+...+... + +=-+++|..+.+... ....+...+++..
T Consensus 597 ~~v~~~~~d~~~~w~~e~----~----vDGfR~D~~~~~~~~--------~~~~~~~~l~~~~ 643 (921)
T 2wan_A 597 PMAQKFVLDSVNYWVNEY----H----VDGFRFDLMALLGKD--------TMAKISNELHAIN 643 (921)
T ss_dssp HHHHHHHHHHHHHHHHHH----C----CCEEEETTGGGGCHH--------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHC----C----CCEEECCCHHHCCCH--------HHHHHHHHHHHHC
T ss_conf 789999999999999860----8----734641342220200--------1445554443317
No 214
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=65.39 E-value=4.3 Score=16.28 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEE-HHHHC-CCCHHHHHHHHHHHHHHHHCCCEEEEE-
Q ss_conf 99899999999988989999188776454888972-799899971-68853-999457999999999999779809997-
Q gi|254780468|r 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY-IPFDTVKFN-GSLMT-GSTEKRIAILRSIIPMAKNIETTIIAK- 916 (963)
Q Consensus 841 ~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~-l~~d~iKiD-~sfv~-~~~~~~~~~v~sii~~a~~lgi~viAe- 916 (963)
.+++..+++.-+++|...-+.=. .-.-+....+ ..++.|=|. |.+-. ..+.+... .+..... -+.-+|+|
T Consensus 136 ~~~l~~l~~~a~~lgle~LvEvh--~~~El~~al~~~~a~iiGINnRdL~t~~vd~~~~~---~l~~~ip-~~~~~IaES 209 (251)
T 1i4n_A 136 AEQIKEIYEAAEELGMDSLVEVH--SREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLW---ELLPLVP-DDTVVVAES 209 (251)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEC--SHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHH---HHGGGSC-TTSEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEHHCC--CHHHHHHHHCCCCCEEEEEECCCHHHCCCCHHHHH---HHHHHCC-CCCCEEECC
T ss_conf 99999999999982998643108--89999988613777288751523220002556899---9984388-898189837
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 03998999989980998994052068
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYIQDSHVAS 942 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~QG~~~~~ 942 (963)
||.+.+++..++ .|+| |+++|.
T Consensus 210 GI~s~~d~~~l~-~G~d---avLIGe 231 (251)
T 1i4n_A 210 GIKDPRELKDLR-GKVN---AVLVGT 231 (251)
T ss_dssp CCCCGGGHHHHT-TTCS---EEEECH
T ss_pred CCCCHHHHHHHH-HCCC---EEEECH
T ss_conf 999999999998-2899---999886
No 215
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=65.06 E-value=4.4 Score=16.24 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=28.1
Q ss_pred HCCCCEEEEEHHHH--CCCCHH--HHHHHHHHHHHHHHC--CCEEE-EEECCCHHHHHHHHHCCCCEE
Q ss_conf 27998999716885--399945--799999999999977--98099-970399899998998099899
Q gi|254780468|r 875 YIPFDTVKFNGSLM--TGSTEK--RIAILRSIIPMAKNI--ETTII-AKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 875 ~l~~d~iKiD~sfv--~~~~~~--~~~~v~sii~~a~~l--gi~vi-AegVE~~~~~~~l~~~G~d~~ 935 (963)
.+..|+|=.-+-.. .+.... ....+...+...+.. ++.++ .=||.+++....+.+.|+|.+
T Consensus 132 ~l~~~iIayEp~waIGtg~~~~~~~~~~i~~~i~~ik~~~~~v~vlyGGgV~~~n~~~~~~~~g~DGv 199 (226)
T 1w0m_A 132 ALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGV 199 (226)
T ss_dssp HTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEEEEHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEE
T ss_conf 36870899830200148878886558999999999850178815999657476679999855899589
No 216
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; structural genomics, PSI, protein structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=64.80 E-value=4.4 Score=16.20 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=33.7
Q ss_pred HHHHHHHCCCEEEEE-ECCCHHHHHHHHHCCCCEEE-CCCCCCC
Q ss_conf 999999779809997-03998999989980998994-0520689
Q gi|254780468|r 902 IIPMAKNIETTIIAK-DIYGEIDIKELTRMGCDYIQ-DSHVASP 943 (963)
Q Consensus 902 ii~~a~~lgi~viAe-gVE~~~~~~~l~~~G~d~~Q-G~~~~~P 943 (963)
+....+..++.|||+ ||-|.++.....++|+|.++ |-.+.+|
T Consensus 178 ~~~~~~~~~ipvia~GGI~~~~d~~~al~~GAdgV~vGsAi~~p 221 (234)
T 1yxy_A 178 LIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRP 221 (234)
T ss_dssp HHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHCH
T ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHCCH
T ss_conf 99987147981898799999999999998699999989354598
No 217
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=64.31 E-value=4.5 Score=16.13 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHHHC--CCEEEEE-ECCCHHHHHHHHHCCCCE
Q ss_conf 99999999977--9809997-039989999899809989
Q gi|254780468|r 899 LRSIIPMAKNI--ETTIIAK-DIYGEIDIKELTRMGCDY 934 (963)
Q Consensus 899 v~sii~~a~~l--gi~viAe-gVE~~~~~~~l~~~G~d~ 934 (963)
+..+++..+.. ++.|+.. ||.+++....+.+.|||.
T Consensus 163 i~~~~~~i~~~~~~i~vlyGgsV~~~~~~~~~~~~g~DG 201 (225)
T 1hg3_A 163 ITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVG 201 (225)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 999999998633640489836869778999987279978
No 218
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=63.79 E-value=4.6 Score=16.06 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCC------CCHHHHHHHHHC--CCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCE--
Q ss_conf 8999999999889899991887------764548889727--998999716885399945799999999999977980--
Q gi|254780468|r 843 RSRLLLGRLRKIGISLTLDDFG------TKCSLLSYLGYI--PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT-- 912 (963)
Q Consensus 843 ~~~~~~~~l~~~G~~ialDdFG------~g~ssl~~L~~l--~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~-- 912 (963)
.....++.|++.|+++..=+-. -|.-.+..+.++ ++|.+=+- ..++ .+..+++-|...|.+
T Consensus 28 ~g~~v~~~L~~~g~~~~~v~p~~~~~~i~g~~~~~sl~dip~~vDlv~i~------vp~~---~v~~~v~e~~~~g~~~v 98 (140)
T 1iuk_A 28 PAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVF------RPPS---ALMDHLPEVLALRPGLV 98 (140)
T ss_dssp HHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEEC------SCHH---HHTTTHHHHHHHCCSCE
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCEECCEEECCCHHHCCCCCCEEEEE------ECHH---HHHHHHHHHHHCCCCEE
T ss_conf 39999999997899338878777653556827206567648987389998------0889---99999999996298989
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9997039989999899809989940520689998999999985161
Q gi|254780468|r 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 (963)
Q Consensus 913 viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~ 958 (963)
.+-.|+++++-.+.+++.|+.++++.++. -+..++.++..|
T Consensus 99 ~~q~G~~~~e~~~~a~~~Gi~vI~~~C~~-----ve~~~~~~~~~~ 139 (140)
T 1iuk_A 99 WLQSGIRHPEFEKALKEAGIPVVADRCLM-----VEHKRLFRGPLP 139 (140)
T ss_dssp EECTTCCCHHHHHHHHHTTCCEEESCCHH-----HHHHHHHTC---
T ss_pred EECCCCCCHHHHHHHHHCCCEEECCCCCH-----HHHHHHHCCCCC
T ss_conf 98989689999999999599799289427-----699997389999
No 219
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=62.28 E-value=4.9 Score=15.86 Aligned_cols=10 Identities=20% Similarity=-0.021 Sum_probs=3.3
Q ss_pred CCHHHHCCCH
Q ss_conf 9977833897
Q gi|254780468|r 440 LASGSMHGPI 449 (963)
Q Consensus 440 ~~~~~l~~~~ 449 (963)
|..++-.|+.
T Consensus 55 Y~i~~r~Gt~ 64 (448)
T 1g94_A 55 YELQSRGGNR 64 (448)
T ss_dssp SCSCBTTBCH
T ss_pred CEECCCCCCH
T ss_conf 4368999999
No 220
>2x4b_A Limit dextrinase; starch, pullulanase, hydrolase, debranching enzyme, glycosid hydrolase family 13; HET: BCD; 2.10A {Hordeum vulgare} PDB: 2x4c_A*
Probab=62.12 E-value=4.9 Score=15.84 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=9.4
Q ss_pred EEEEEECCCCCCEEEEE
Q ss_conf 99998559888335999
Q gi|254780468|r 89 AVFALANTSDSQLERLI 105 (963)
Q Consensus 89 ~~~~l~N~s~~~~~~~L 105 (963)
..|.|--|+.+.+...+
T Consensus 138 ~~f~vwAp~a~~V~l~~ 154 (884)
T 2x4b_A 138 VSLHLWAPTAQGVSVCF 154 (884)
T ss_dssp EEEEEECTTCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEE
T ss_conf 89999999999899999
No 221
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=62.06 E-value=4.9 Score=15.84 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=78.4
Q ss_pred HHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHH---H--HC
Q ss_conf 99988199954699997133775099989999999998-898999918877645488897279989997168---8--53
Q gi|254780468|r 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS---L--MT 889 (963)
Q Consensus 816 ~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~-~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~s---f--v~ 889 (963)
..+.+.++ +.+++.++- .+.+...+.+++++. +++.+..-+..| +....+|.+-..|.||+.-. . ++
T Consensus 150 ~~l~~aGv--d~ivID~Ah----g~s~~~~~~ik~~k~~~~v~VIaGNV~T-~e~a~~L~~aGAD~VkVGiG~Gs~CtTr 222 (400)
T 3ffs_A 150 KLLVEAGV--DVIVLDSAH----GHSLNIIRTLKEIKSKMNIDVIVGNVVT-EEATKELIENGADGIKVGIGPGSICTTR 222 (400)
T ss_dssp HHHHHHTC--SEEEECCSC----CSBHHHHHHHHHHHTTCCCEEEEEEECS-HHHHHHHHHTTCSEEEECC---------
T ss_pred HHHHHCCC--CEEEECCCC----CCCCCHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 99987599--779754655----4321067899998863796399942178-9999999980998565403278456665
Q ss_pred CCC----HHHHHHHHHHHHHHHHCCCEEEEE-ECCCHHHHHHHHHCCCCEEE-CCCCCC
Q ss_conf 999----457999999999999779809997-03998999989980998994-052068
Q gi|254780468|r 890 GST----EKRIAILRSIIPMAKNIETTIIAK-DIYGEIDIKELTRMGCDYIQ-DSHVAS 942 (963)
Q Consensus 890 ~~~----~~~~~~v~sii~~a~~lgi~viAe-gVE~~~~~~~l~~~G~d~~Q-G~~~~~ 942 (963)
... |.- ..+....+.++..++.|||. ||.+..+....-.+|-|+++ |..|+.
T Consensus 223 ~~tGvG~Pq~-sav~~~a~~~~~~~v~iIADGGi~~~GDi~KAla~GAd~VMlGs~lAg 280 (400)
T 3ffs_A 223 IVAGVGVPQI-TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAG 280 (400)
T ss_dssp CCSCBCCCHH-HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTT
T ss_pred CCCCCCCCHH-HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf 3036774479-999999999986599789537857687399998718735333115304
No 222
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, hydrolase; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=61.88 E-value=5 Score=15.81 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=8.8
Q ss_pred EEEEEECCCCCCEEEEE
Q ss_conf 99998559888335999
Q gi|254780468|r 89 AVFALANTSDSQLERLI 105 (963)
Q Consensus 89 ~~~~l~N~s~~~~~~~L 105 (963)
.+|.|--|..+.+...+
T Consensus 115 ~~F~vwAP~A~~V~l~~ 131 (718)
T 2e8y_A 115 TVFKVWAPAATSAAVKL 131 (718)
T ss_dssp EEEEEECTTCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEE
T ss_conf 89999899999899998
No 223
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=61.38 E-value=5 Score=15.75 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=12.6
Q ss_pred EEEEEEEECCCCCEEEEEEEEE
Q ss_conf 8722676879998899999998
Q gi|254780468|r 496 IIRIRPMSNSNGDILRYIGIAN 517 (963)
Q Consensus 496 ~~~~~~i~~~~g~~~~~~g~~~ 517 (963)
.+.++-+.+.+|++..+.|+-.
T Consensus 3 ~v~G~~~~d~nG~~~~lrGvN~ 24 (294)
T 2whl_A 3 SVDGNTLYDANGQPFVMRGINH 24 (294)
T ss_dssp EEETTEEECTTSCBCCCEEEEE
T ss_pred EEECCEEECCCCCEEEEEEEEC
T ss_conf 7869999989999999988615
No 224
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=60.62 E-value=5.2 Score=15.65 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=14.4
Q ss_pred EEEEEEEECCCCCEEEEEEEEE
Q ss_conf 8722676879998899999998
Q gi|254780468|r 496 IIRIRPMSNSNGDILRYIGIAN 517 (963)
Q Consensus 496 ~~~~~~i~~~~g~~~~~~g~~~ 517 (963)
.+++..+++.+|++..+.|+-.
T Consensus 5 ~v~g~~l~d~~G~~~~l~Gvn~ 26 (302)
T 1bqc_A 5 HVKNGRLYEANGQEFIIRGVSH 26 (302)
T ss_dssp EEETTEEECTTSCBCCCEEEEE
T ss_pred EEECCEEECCCCCEEEEEEECC
T ss_conf 9979999989999999998536
No 225
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A*
Probab=59.90 E-value=5.3 Score=15.56 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHCCCCHHHEEEE--EEHHHHHCCHHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHHHC-CCCEEEEE
Q ss_conf 8999999998819995469999--7133775099989999999998--89899991887764548889727-99899971
Q gi|254780468|r 810 LCEGMQALISKTLYSPSRIKLS--FSESVVMGNPERSRLLLGRLRK--IGISLTLDDFGTKCSLLSYLGYI-PFDTVKFN 884 (963)
Q Consensus 810 f~~~l~~~l~~~~~~~~~l~lE--itE~~~~~~~~~~~~~~~~l~~--~G~~ialDdFG~g~ssl~~L~~l-~~d~iKiD 884 (963)
.++.+ ..|.+...+- .+.+| +.+.....+.+..+.+-+++++ .++.|+.|+-=.....+..+.+. -.|.|-|+
T Consensus 254 a~~~l-~~L~~~~~~~-~l~IEqPl~~~d~~~~~e~la~L~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~a~d~v~iK 331 (413)
T 1kcz_A 254 MADYI-QTLAEAAKPF-HLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIK 331 (413)
T ss_dssp HHHHH-HHHHHHHTTS-CEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEEC
T ss_pred HHHHH-HHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf 99999-9999746676-520048877424566999999999988625887744056441689999999860768889954
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEE--CCCHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHHHHHH
Q ss_conf 688539994579999999999997798099970--39989999899809989940520689-998999999985
Q gi|254780468|r 885 GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD--IYGEIDIKELTRMGCDYIQDSHVASP-LGFNSILKLLKE 955 (963)
Q Consensus 885 ~sfv~~~~~~~~~~v~sii~~a~~lgi~viAeg--VE~~~~~~~l~~~G~d~~QG~~~~~P-~~~~~~~~~l~~ 955 (963)
..=+.++++.. .++.+|+..|+.++.-| -||+.-...-..+++-..-++.++|| +..++-..++.+
T Consensus 332 ~~~~GGi~ea~-----~~~~~a~~~Gi~~~igg~~~Et~~s~~a~~hla~a~~~~~~l~kpg~~~~~~~~~~~n 400 (413)
T 1kcz_A 332 TPDLGGVNNIA-----DAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKN 400 (413)
T ss_dssp TGGGSSTHHHH-----HHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHTCSEEECCSSSSSHHHHHHHHH
T ss_pred CHHCCCHHHHH-----HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 03138889999-----9999999859919985785876358999999997348641003798764542689998
No 226
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=59.59 E-value=5.4 Score=15.52 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=17.2
Q ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 99999977980999703998999989980998994
Q gi|254780468|r 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 (963)
Q Consensus 902 ii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~Q 936 (963)
+++.|+..|+ .+..||.|..+.....+.|||++.
T Consensus 96 v~~~~~~~~~-~~iPGv~TptEi~~A~~~G~~~vK 129 (205)
T 1wa3_A 96 ISQFCKEKGV-FYMPGVMTPTELVKAMKLGHTILK 129 (205)
T ss_dssp HHHHHHHHTC-EEECEECSHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHCCC-CCCCCCCCCHHHHHHHHCCCCEEE
T ss_conf 9999998399-822774871589999976999797
No 227
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A*
Probab=58.96 E-value=5.5 Score=15.45 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=13.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799679989999999999
Q gi|254780468|r 759 LIAEELCMIKAINLFMLERIARD 781 (963)
Q Consensus 759 ~~ae~~gl~~~ld~~vl~~a~~~ 781 (963)
|.-|+.+-+..|-+..+++.++.
T Consensus 309 pLreR~~Di~~l~~~~l~~~~~~ 331 (387)
T 1ny5_A 309 PLRERKEDIIPLANHFLKKFSRK 331 (387)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 93547443999999999999998
No 228
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=58.42 E-value=5.6 Score=15.38 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=46.8
Q ss_pred CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCEEECCCC
Q ss_conf 4899999767857988842778899999999999998348-9976999806410202556
Q gi|254780468|r 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILIS 623 (963)
Q Consensus 565 ~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~-~~~~laR~~gdeFaill~~ 623 (963)
+.+++++||.+|..+-++++.+.--+++..+-..+.+.+. .+..+.++.||.+......
T Consensus 14 ~vtilf~Di~~fT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~~~~gd~~~~~f~~ 73 (208)
T 2w01_A 14 PITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGA 73 (208)
T ss_dssp EEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESS
T ss_pred EEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCC
T ss_conf 999999981781498775999999999999999999999973758999952237888489
No 229
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P*
Probab=58.03 E-value=5.7 Score=15.33 Aligned_cols=12 Identities=0% Similarity=-0.188 Sum_probs=4.9
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999881999
Q gi|254780468|r 813 GMQALISKTLYS 824 (963)
Q Consensus 813 ~l~~~l~~~~~~ 824 (963)
.+.+.+++.++.
T Consensus 318 ~I~~~~~~~~ld 329 (452)
T 1pii_A 318 DVVDKAKVLSLA 329 (452)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHCCCC
T ss_conf 999999865998
No 230
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=57.75 E-value=5.7 Score=15.30 Aligned_cols=104 Identities=9% Similarity=0.133 Sum_probs=60.6
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHH----HHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCC---CEEEEEE
Q ss_conf 9999999988989999188776454----88897279989997168853999457999999999999779---8099970
Q gi|254780468|r 845 RLLLGRLRKIGISLTLDDFGTKCSL----LSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE---TTIIAKD 917 (963)
Q Consensus 845 ~~~~~~l~~~G~~ialDdFG~g~ss----l~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lg---i~viAeg 917 (963)
..+-..+++.|+.+-. |.++.+ .....+-.++.|=|. ..+.....++..++...+..| +.||+-|
T Consensus 622 ~~iA~~F~d~GfeV~~---~~~f~TpeE~a~aA~e~~a~vvgic-----s~d~~h~~lvp~l~~~Lk~~g~~~i~VvvgG 693 (762)
T 2xij_A 622 KVIATGFADLGFDVDI---GPLFQTPREVAQQAVDADVHAVGVS-----TLAAGHKTLVPELIKELNSLGRPDILVMCGG 693 (762)
T ss_dssp HHHHHHHHHTTCEEEE---CCTTCCHHHHHHHHHHTTCSEEEEE-----ECSSCHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHHHCCCEEEE---CCCCCCHHHHHHHHHHCCCCEEEEE-----CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9999999857902852---7877899999999997699999992-----6876568899999999996699986799807
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 399899998998099899405206899989999999851
Q gi|254780468|r 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 (963)
Q Consensus 918 VE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~ 956 (963)
|--+++.+.|++.||+-+=|---.=|-...++++.+++.
T Consensus 694 viP~~d~~~l~~aGV~~if~pg~~i~~~~~~i~~~i~~~ 732 (762)
T 2xij_A 694 VIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp SCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 788788999998698878399982999999999999999
No 231
>3isy_A Bsupi, intracellular proteinase inhibitor; NP_388994.1, intracellular proteinase inhibitor (bsupi) from bacillus subtilis, structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=57.59 E-value=5.8 Score=15.28 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=42.7
Q ss_pred CCEEEEEEEECCCCCCEEEEEEECCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEE
Q ss_conf 73579999855988833599995562231148999856983688633876773235555667447787389985999999
Q gi|254780468|r 85 RGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIME 164 (963)
Q Consensus 85 s~~W~~~~l~N~s~~~~~~~L~~~~p~Ld~i~~y~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~f~l~l~p~~~~t~~~r 164 (963)
...=+.++|+|++++++ .+.++.=-.-++...|.+|..+-.-.++.-|. ..+-..+++||++.+|-..
T Consensus 18 ~~v~~~ltv~N~~~~~v----~l~F~Sgq~~Dl~l~d~~g~~v~~wS~~~mFt--------Qal~~~~l~~ge~~~~~~~ 85 (120)
T 3isy_A 18 EQIKFNMSLKNQSERAI----EFQFSTGQKFELVVYDSEHKERYRYSKEKMFT--------QAFQNLTLESGETYDFSDV 85 (120)
T ss_dssp SCEEEEEEEEECSSSCE----EEEESSSCCEEEEEECTTCCEEEETTTTCCCC--------CCCEEEEECTTCEEEEEEE
T ss_pred CCEEEEEEEECCCCCEE----EEEECCCCEEEEEEECCCCCEEEEECCCCHHH--------HHHEEEEECCCCEEEEEEE
T ss_conf 74999999984899408----98967988899999989998999934770445--------3031288289988999888
Q ss_pred EC
Q ss_conf 73
Q gi|254780468|r 165 IS 166 (963)
Q Consensus 165 ~~ 166 (963)
..
T Consensus 86 ~~ 87 (120)
T 3isy_A 86 WK 87 (120)
T ss_dssp ES
T ss_pred CC
T ss_conf 03
No 232
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=56.60 E-value=6 Score=15.16 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=5.5
Q ss_pred EEEECCCEEE
Q ss_conf 9980641020
Q gi|254780468|r 610 ARLSGNRFGI 619 (963)
Q Consensus 610 aR~~gdeFai 619 (963)
.=+.|+||+.
T Consensus 437 ~i~~G~E~g~ 446 (602)
T 2bhu_A 437 LLFQGQEWAA 446 (602)
T ss_dssp EEETTGGGTC
T ss_pred EEECCHHHCC
T ss_conf 8975632247
No 233
>2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica}
Probab=56.44 E-value=6 Score=15.14 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHH
Q ss_conf 88972799899971688539994579999999999997798099970399899998998099899405206899989999
Q gi|254780468|r 871 SYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 (963)
Q Consensus 871 ~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~ 950 (963)
..+..-+++.|=||-+=+.-+|...-..+..+...++..|.+++.-|+- ++..+.+..+|.|. +++-+.+ +.++.+
T Consensus 36 ~~i~~~~~~~vilD~s~v~~idssgl~~l~~~~~~~~~~g~~~~l~g~~-p~v~~~l~~~g~d~-~~~~~~~--tl~~Al 111 (123)
T 2vy9_A 36 HNITGVAGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLTGIK-PAVAITLTEMGLDL-RGMATAL--NLQKGL 111 (123)
T ss_dssp HHHTTSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHHHTTCCS-TTSEEES--SHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHHHHCCCC-CCCEEEC--CHHHHH
T ss_conf 9998479979999856997451999999999999999769989999389-99999999959986-7825668--999999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999851611026
Q gi|254780468|r 951 KLLKERFPLVKN 962 (963)
Q Consensus 951 ~~l~~~~~~~~~ 962 (963)
+.+++.-+..+|
T Consensus 112 ~~l~~~~~~~~r 123 (123)
T 2vy9_A 112 DKLKNLARMEQR 123 (123)
T ss_dssp HHHHHHTTC---
T ss_pred HHHHHHCCCCCC
T ss_conf 999863352579
No 234
>1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=56.39 E-value=6 Score=15.13 Aligned_cols=25 Identities=8% Similarity=-0.235 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 9999999987089740520111110
Q gi|254780468|r 677 AELAMYHAKHRGGNHVESFRVSSFR 701 (963)
Q Consensus 677 Ad~Al~~Ak~~g~~~~~~~~~~~~~ 701 (963)
.|..+..+|+-|-+.++..+.....
T Consensus 112 ~d~yl~~~k~lGf~~IEISdGsi~i 136 (276)
T 1u83_A 112 VNEFHRYCTYFGCEYIEISNGTLPM 136 (276)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSSCC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 9999999998599889978980128
No 235
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes}
Probab=55.21 E-value=6.3 Score=14.99 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCE-EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999977980-9997039989999899809989940520689998999999985
Q gi|254780468|r 897 AILRSIIPMAKNIETT-IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 897 ~~v~sii~~a~~lgi~-viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
.++..+...|-.+|+. ++.|-=.+.+ ..+||..| -++.+++.+++++
T Consensus 326 ~~v~~la~AAva~G~dGl~iE~H~dP~------~A~sD~~~------~l~~~el~~ll~~ 373 (385)
T 3nvt_A 326 DLLLPCAKAALAIEADGVMAEVHPDPA------VALSDSAQ------QMDIPEFEEFWNA 373 (385)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEBCSCGG------GCSSCTTT------SBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCC------CCCCCCCC------CCCHHHHHHHHHH
T ss_conf 159999999999589989998068800------06897111------3899999999999
No 236
>3oir_A Sulfate transporter sulfate transporter family PR; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; HET: MSE; 1.85A {Wolinella succinogenes}
Probab=54.52 E-value=6.4 Score=14.91 Aligned_cols=111 Identities=12% Similarity=0.022 Sum_probs=74.7
Q ss_pred HHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHH
Q ss_conf 88199954699997133775099989999999998898999918877645488897279989997168853999457999
Q gi|254780468|r 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898 (963)
Q Consensus 819 ~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~ 898 (963)
.+..+|++-.++++.......+.+...+ .+.+.. =++..|=||-+=+..+|...-..
T Consensus 16 ~~~~~~~gv~v~rl~G~L~F~~a~~~~~---~l~~~~--------------------~~~~~vIlD~~~v~~iDssg~~~ 72 (135)
T 3oir_A 16 SKKVVPLGVEIYEINGPFFFGVADRLKG---VLDVIE--------------------ETPKVFILRMRRVPVIDATGMHA 72 (135)
T ss_dssp GGSCCCTTEEEEECCSSBSHHHHHHHTT---HHHHCS--------------------SCCSEEEEECTTCSCBCHHHHHH
T ss_pred CCCCCCCCEEEEEECCEEEHHHHHHHHH---HHHHHC--------------------CCCCEEEEECCCCCCCCHHHHHH
T ss_conf 5444899879999621886151999999---999734--------------------79999999750797547889999
Q ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEC--CCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999779809997039989999899809989940--5206899989999999851
Q gi|254780468|r 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD--SHVASPLGFNSILKLLKER 956 (963)
Q Consensus 899 v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG--~~~~~P~~~~~~~~~l~~~ 956 (963)
+..+...++..|++++.-|+. ......|...|..-.-| ..|. ..++.++..++.
T Consensus 73 L~~l~~~~~~~g~~l~l~~~~-~~v~~~l~~~g~~~~~~~~~if~---t~~~Al~~a~~~ 128 (135)
T 3oir_A 73 LWEFQESCEKRGTILLLSGVS-DRLYGALNRFGFIEALGEERVFD---HIDKALAYAKLL 128 (135)
T ss_dssp HHHHHHHHHHHTCEEEEESCC-HHHHHHHHHTTHHHHHCGGGBCS---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEECC-HHHHHHHHHCCCHHHCCCCCCCC---CHHHHHHHHHHH
T ss_conf 999999998579999999799-89999999869923328772449---999999999998
No 237
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme., structural genomics; 1.70A {Escherichia coli O157} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=54.50 E-value=6.4 Score=14.91 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=5.4
Q ss_pred HHHHHCCCCEEE
Q ss_conf 998708974052
Q gi|254780468|r 683 HAKHRGGNHVES 694 (963)
Q Consensus 683 ~Ak~~g~~~~~~ 694 (963)
.|+..|-..+.+
T Consensus 148 aAk~aGi~~i~~ 159 (176)
T 2fpr_A 148 LAENMGINGLRY 159 (176)
T ss_dssp HHHHHTSEEEEC
T ss_pred HHHHCCCEEEEE
T ss_conf 999869969998
No 238
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics, PSI; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=53.44 E-value=6.6 Score=14.79 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCEEEEEECC-CHHHHHHHHHCCCCEEECCC
Q ss_conf 999999999779809997039-98999989980998994052
Q gi|254780468|r 899 LRSIIPMAKNIETTIIAKDIY-GEIDIKELTRMGCDYIQDSH 939 (963)
Q Consensus 899 v~sii~~a~~lgi~viAegVE-~~~~~~~l~~~G~d~~QG~~ 939 (963)
-..+++.+|+.|++|.+=.|. +++..+.+.++|||.+.=.+
T Consensus 183 ~~~~v~~~~~~G~~v~vwTvnd~~~~~~~l~~~GVDgI~TD~ 224 (248)
T 1zcc_A 183 RPGIIEASRKAGLEIMVYYGGDDMAVHREIATSDVDYINLDR 224 (248)
T ss_dssp SHHHHHHHHHHTCEEEEECCCCCHHHHHHHHHSSCSEEEESC
T ss_pred CHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 999999999879989997769989999999976999999686
No 239
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=53.23 E-value=6.7 Score=14.76 Aligned_cols=11 Identities=9% Similarity=0.141 Sum_probs=4.1
Q ss_pred CCCCCEEEEEE
Q ss_conf 38998599999
Q gi|254780468|r 153 INPGAVVTFIM 163 (963)
Q Consensus 153 l~p~~~~t~~~ 163 (963)
+.+|....|.+
T Consensus 182 ~~~g~~Y~y~i 192 (722)
T 3k1d_A 182 FPCDGLYKFRV 192 (722)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEE
T ss_conf 88898798999
No 240
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Probab=52.98 E-value=6.7 Score=14.73 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=20.1
Q ss_pred CEEEEEEEECCCCCCEEEEEEECCCEEEEEEEEEEE
Q ss_conf 357999985598883359999556223114899985
Q gi|254780468|r 86 GDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPD 121 (963)
Q Consensus 86 ~~W~~~~l~N~s~~~~~~~L~~~~p~Ld~i~~y~~~ 121 (963)
+-.+.++|.... +.+..++.-..-.....+.+...
T Consensus 109 g~y~~i~l~~~~-~~~~fi~~~~~~~~~~~d~~~~~ 143 (1083)
T 2fhf_A 109 GPYWVIPLTKES-GCINVIVRDGTNKLIDSDLRVSF 143 (1083)
T ss_dssp EEEEEEEBSCSS-SEEEEEEEETTEESSCSCEEEET
T ss_pred CCEEEEEECCCC-CEEEEEEECCCCCCCCCCCEEEC
T ss_conf 037999836999-86889997585557899725865
No 241
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=51.55 E-value=7.1 Score=14.57 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=4.0
Q ss_pred CCCCHHHHHHH
Q ss_conf 02303578889
Q gi|254780468|r 752 ISSSEFMLIAE 762 (963)
Q Consensus 752 i~p~~fi~~ae 762 (963)
++-.+.+..++
T Consensus 257 lsheeVl~~~~ 267 (287)
T 3odg_A 257 LSHEQTLKFAK 267 (287)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 89999999999
No 242
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=51.45 E-value=6.4 Score=14.90 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=25.5
Q ss_pred CCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCC
Q ss_conf 989997168853999457999999999999779809997039989999899809
Q gi|254780468|r 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 (963)
Q Consensus 878 ~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G 931 (963)
++.|=||-+=+..+|......+..+++-+++-|++++..|+ +++..+.+.++|
T Consensus 44 ~~~vild~~~v~~iD~Sa~~aL~~~~~~~~~~g~~l~l~gl-~~~v~~~l~r~G 96 (99)
T 3oiz_A 44 LDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGM-NEASETMVDRLA 96 (99)
T ss_dssp CSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESH-HHHHTTCC----
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC-CHHHHHHHHHHC
T ss_conf 99999984789723779999999999999957999999829-989999999826
No 243
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis}
Probab=51.10 E-value=7.2 Score=14.52 Aligned_cols=88 Identities=13% Similarity=0.050 Sum_probs=53.9
Q ss_pred HHHHHHHHHCCCCEEEEEHHHHCCCCHHHH-HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEE--ECCCCCCC
Q ss_conf 454888972799899971688539994579-999999999997798099970399899998998099899--40520689
Q gi|254780468|r 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI--QDSHVASP 943 (963)
Q Consensus 867 ~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~-~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~--QG~~~~~P 943 (963)
........+..+|||-+.+-|-...-++.. .=+..+-.+++..++.|||-|==+.+....+.+.|++.+ -+..+..+
T Consensus 120 ~~e~~~a~~~gaDYi~~gpif~T~tK~~~~~~g~~~l~~~~~~~~~PvvAiGGI~~~ni~~~~~~Ga~gvav~s~I~~~~ 199 (221)
T 1yad_A 120 LEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSSA 199 (221)
T ss_dssp HHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf 99999998659997830677666666531033678887640035676798679899999999980998899849997799
Q ss_pred CCHHHHHHHHH
Q ss_conf 99899999998
Q gi|254780468|r 944 LGFNSILKLLK 954 (963)
Q Consensus 944 ~~~~~~~~~l~ 954 (963)
=|.+.+.++.+
T Consensus 200 dp~~~~~~~~~ 210 (221)
T 1yad_A 200 EPLEAARRYSR 210 (221)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 99999999999
No 244
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.6.2.5
Probab=51.04 E-value=7.2 Score=14.51 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHHHCC
Q ss_conf 976899999999999607
Q gi|254780468|r 457 HINDRDNFRTILDSFVGY 474 (963)
Q Consensus 457 hp~D~~~~~~~l~~~~~~ 474 (963)
|.-|.+..++++....++
T Consensus 38 HAGD~~~m~~tv~lA~~~ 55 (255)
T 1v6t_A 38 HAGDPLVMRKTVRLAKEN 55 (255)
T ss_dssp SSCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 567799999999999984
No 245
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural genomics, PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=50.42 E-value=7.3 Score=14.44 Aligned_cols=59 Identities=10% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999988989999188776454888972799-89997168853999457999999999999779
Q gi|254780468|r 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF-DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE 910 (963)
Q Consensus 847 ~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~-d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lg 910 (963)
..+.|.+.|+.+..-.+ + +...+..+.. ..|.+.-.+.++. ++=..+++.+-++.+-+|
T Consensus 347 ~~~~L~~~gI~v~~G~~---c-a~~~~~~~~~~g~vRvS~~~~nt~-eDId~l~~~l~~i~r~~g 406 (406)
T 1kmj_A 347 VGSFLDNYGIAVRTGHH---C-AMPLMAYYNVPAMCRASLAMYNTH-EEVDRLVTGLQRIHRLLG 406 (406)
T ss_dssp HHHHHHHTTEECEEECT---T-CHHHHHHTTCSCEEEEECCTTCCH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCEEECCCH---H-HHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHHHHHHHHHHC
T ss_conf 99999778969976603---2-256788618997899978898999-999999999999998609
No 246
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Probab=49.81 E-value=7.5 Score=14.37 Aligned_cols=115 Identities=8% Similarity=0.025 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEHHHH---CCC--CHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 99989999999998898999918877-64548889727998999716885---399--9457999999999999779809
Q gi|254780468|r 840 NPERSRLLLGRLRKIGISLTLDDFGT-KCSLLSYLGYIPFDTVKFNGSLM---TGS--TEKRIAILRSIIPMAKNIETTI 913 (963)
Q Consensus 840 ~~~~~~~~~~~l~~~G~~ialDdFG~-g~ssl~~L~~l~~d~iKiD~sfv---~~~--~~~~~~~v~sii~~a~~lgi~v 913 (963)
..+......+..++.|.+..++-... ...+...+.++.++++-+..+.- ... .++. ++.+.. .++.++.+
T Consensus 94 ~~~~l~~~~~~~~~~g~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~i~~-~~~~~~~i 169 (218)
T 3jr2_A 94 HIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDD---LDKMRQ-LSALGIEL 169 (218)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHHHHTCCSCHHH---HHHHHH-HHHTTCEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHH---HHHHHH-HHCCCCCE
T ss_conf 54789999998764188437842788999999998864822869997244244773668999---999999-84899707
Q ss_pred EEEECCCHHHHHHHHHCCCCEE-ECCCCCC---CCCHHHHHHHHHHHCC
Q ss_conf 9970399899998998099899-4052068---9998999999985161
Q gi|254780468|r 914 IAKDIYGEIDIKELTRMGCDYI-QDSHVAS---PLGFNSILKLLKERFP 958 (963)
Q Consensus 914 iAegVE~~~~~~~l~~~G~d~~-QG~~~~~---P~~~~~~~~~l~~~~~ 958 (963)
.+.|=-+.++...+.+.|+|++ -|-.+-+ |..++++.+.+++-+|
T Consensus 170 ~v~gGi~~~~~~~~~~~GaD~iVvGraI~~a~dp~~a~~~~~~i~~~~~ 218 (218)
T 3jr2_A 170 SITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAAALREQIDRFWP 218 (218)
T ss_dssp EEESSCCGGGGGGGTTSCEEEEEESGGGSHHHHHHHHHHHHHHHHHHC-
T ss_pred EECCCCCCCCHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8679968257999998499999988366079999999999999997583
No 247
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=49.59 E-value=7.5 Score=14.35 Aligned_cols=130 Identities=13% Similarity=0.068 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH-C-CCEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 391489999999988199954699997133775099989999999998-8-98999918877645488897279989997
Q gi|254780468|r 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-I-GISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 (963)
Q Consensus 806 ~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~-~-G~~ialDdFG~g~ssl~~L~~l~~d~iKi 883 (963)
.+.+-...+.+.+.+.+++ ++|||=+. +.+.+.++.+++ . ++.++.--.= .-.......+...+++=
T Consensus 26 ~~~~~~~~~~~al~~~Gi~----~iEITl~t-----~~a~~~i~~l~~~~p~~~vGaGTVl-~~~~~~~a~~aGA~Fiv- 94 (224)
T 1vhc_A 26 DNADDILPLADTLAKNGLS----VAEITFRS-----EAAADAIRLLRANRPDFLIAAGTVL-TAEQVVLAKSSGADFVV- 94 (224)
T ss_dssp SSGGGHHHHHHHHHHTTCC----EEEEETTS-----TTHHHHHHHHHHHCTTCEEEEESCC-SHHHHHHHHHHTCSEEE-
T ss_pred CCHHHHHHHHHHHHHCCCC----EEEEECCC-----CHHHHHHHHHHHHCCCEEEEEECCC-CHHHHHHHHHHCCCEEE-
T ss_conf 9999999999999987998----89996898-----0399999999986899189620204-57999999983799897-
Q ss_pred EHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 1688539994579999999999997798099970399899998998099899405206899989999999851611
Q gi|254780468|r 884 NGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 (963)
Q Consensus 884 D~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~ 959 (963)
+|. +-..+++.|+..|+.. ..|+.|..+....+++||+.+.=| =+..+.-..+++-++.-+|-
T Consensus 95 --------SP~---~~~~v~~~a~~~~i~~-iPG~~TpsEi~~A~~~G~~~vKlF-PA~~~gG~~~lkal~~p~p~ 157 (224)
T 1vhc_A 95 --------TPG---LNPKIVKLCQDLNFPI-TPGVNNPMAIEIALEMGISAVKFF-PAEASGGVKMIKALLGPYAQ 157 (224)
T ss_dssp --------CSS---CCHHHHHHHHHTTCCE-ECEECSHHHHHHHHHTTCCEEEET-TTTTTTHHHHHHHHHTTTTT
T ss_pred --------CCC---CCHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHCCCCEEEEC-CCCCCCCHHHHHHHHCCCCC
T ss_conf --------278---9999999998569984-588588799999998599968876-52112589999856534568
No 248
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8
Probab=49.39 E-value=7.6 Score=14.32 Aligned_cols=44 Identities=7% Similarity=0.005 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 1489999999988199954699997133775099989999999998898
Q gi|254780468|r 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 (963)
Q Consensus 808 ~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~ 856 (963)
+.+...+..+...++ .+.+....= +.+.++.+.++++.+-++|-
T Consensus 356 ~~~~~ela~lag~f~----~v~~g~~WW-f~d~~~gm~~~l~~~~e~~~ 399 (463)
T 1j5s_A 356 PTHLPTISTIARAFP----NVYVGAPWW-FNDSPFGMEMHLKYLASVDL 399 (463)
T ss_dssp GGGHHHHHHHHHHCT----TEEECCCCS-TTCSHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHCC----CCEECCHHH-HCCCHHHHHHHHHHHHHHCC
T ss_conf 630999999985298----771237046-40879999999999998506
No 249
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippurate, 3-hydroxyhippuric acid; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=49.30 E-value=7.6 Score=14.31 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=7.0
Q ss_pred HHHHHHHCCCE
Q ss_conf 99999988989
Q gi|254780468|r 847 LLGRLRKIGIS 857 (963)
Q Consensus 847 ~~~~l~~~G~~ 857 (963)
..+.|.+.|+-
T Consensus 414 v~~~L~~~gI~ 424 (465)
T 3e9k_A 414 VFQELEKRGVV 424 (465)
T ss_dssp HHHHHHTTTEE
T ss_pred HHHHHHHCCCE
T ss_conf 99999987988
No 250
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Probab=49.02 E-value=7.7 Score=14.28 Aligned_cols=128 Identities=9% Similarity=0.058 Sum_probs=77.1
Q ss_pred EEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 99997697794391489999999988199954699997133775099989999999998898999918877645488897
Q gi|254780468|r 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 (963)
Q Consensus 795 ~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~ 874 (963)
++++-+.+.+ -++.+++-..+.+.. +++++-|+-+ ....+.++.|++.|+++.+.-.=+-.. .-.-.
T Consensus 55 ~vs~ev~~~~--~~~mi~~A~~l~~~~----~ni~vKIP~t------~~g~~a~~~L~~~Gi~vn~Tav~s~~Q-a~~Aa 121 (220)
T 1l6w_A 55 RLFAQVMATT--AEGMVNDALKLRSII----ADIVVKVPVT------AEGLAAIKMLKAEGIPTLGTAVYGAAQ-GLLSA 121 (220)
T ss_dssp EEEEECCCSS--HHHHHHHHHHHHHHS----TTCEEEEECS------HHHHHHHHHHHHHTCCEEEEEECSHHH-HHHHH
T ss_pred CEEEEEEECC--HHHHHHHHHHHHHHC----CCCEEEEECC------HHHHHHHHHHHHCCCCEEEECCCCHHH-HHHHH
T ss_conf 6899997376--777899999999728----6758995062------757899999887393288400187999-99999
Q ss_pred HCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHH--HHCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 27998999716885399945799999999999--97798099970399899998998099899
Q gi|254780468|r 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMA--KNIETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 875 ~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a--~~lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
....+||-+=-.=+.+...+....++.+.++- ++.+.++++--+-+.++...+...|||++
T Consensus 122 ~aga~yvsp~~gR~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~AS~R~~~~v~~a~~~G~d~i 184 (220)
T 1l6w_A 122 LAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESI 184 (220)
T ss_dssp HHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEEBCCSSHHHHHHHHHTTCSEE
T ss_pred HCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEE
T ss_conf 725570755542245246886899999999998358980999887087999999998699999
No 251
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NADP-binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=48.87 E-value=7.7 Score=14.27 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=13.7
Q ss_pred HHHHHCCCCHHHEEEEEEHHHHH
Q ss_conf 99988199954699997133775
Q gi|254780468|r 816 ALISKTLYSPSRIKLSFSESVVM 838 (963)
Q Consensus 816 ~~l~~~~~~~~~l~lEitE~~~~ 838 (963)
+.+++-.....++++.+.|..-.
T Consensus 344 ~~l~~g~~~G~KvVv~v~~~~~~ 366 (371)
T 3gqv_A 344 ELVRKGELSGEKLVVRLEGPLEH 366 (371)
T ss_dssp HHHHTTCCSSCEEEEEECCC---
T ss_pred HHHHCCCCEEEEEEEEECCCCCC
T ss_conf 99977995437999982997434
No 252
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=48.09 E-value=5.7 Score=15.32 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=5.1
Q ss_pred EEEEEECCCEE
Q ss_conf 59999556223
Q gi|254780468|r 102 ERLIVVPHYRL 112 (963)
Q Consensus 102 ~~~L~~~~p~L 112 (963)
+.++.+.+.++
T Consensus 77 D~~~~~~~~~i 87 (660)
T 1z7e_A 77 DVIFSFYYRHL 87 (660)
T ss_dssp SEEEEESCCSC
T ss_pred CEEEEEHHHHH
T ss_conf 99998322224
No 253
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=47.07 E-value=8.2 Score=14.06 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=60.2
Q ss_pred HHHHHHHHHCCCCEEEEEHHHHCCCCHHH-HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEE--ECCCCCCC
Q ss_conf 45488897279989997168853999457-9999999999997798099970399899998998099899--40520689
Q gi|254780468|r 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI--QDSHVASP 943 (963)
Q Consensus 867 ~ssl~~L~~l~~d~iKiD~sfv~~~~~~~-~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~--QG~~~~~P 943 (963)
...........+|||=+.+-|-...-++. ..-+..+-++++..++.|+|-|==|.+....+.+.|++.+ -+..+..|
T Consensus 118 ~~e~~~a~~~g~DYi~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~Ga~giAvisaI~~~~ 197 (215)
T 1xi3_A 118 LEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAE 197 (215)
T ss_dssp HHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCEEEEHHHHHCCC
T ss_conf 99999998769988996244306888888876588999998735798278779999999999980998999729977799
Q ss_pred CCHHHHHHHHH
Q ss_conf 99899999998
Q gi|254780468|r 944 LGFNSILKLLK 954 (963)
Q Consensus 944 ~~~~~~~~~l~ 954 (963)
=|. +..+-++
T Consensus 198 dp~-~~~~~l~ 207 (215)
T 1xi3_A 198 DVR-KATEELR 207 (215)
T ss_dssp SHH-HHHHHHH
T ss_pred CHH-HHHHHHH
T ss_conf 999-9999999
No 254
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=46.90 E-value=6.6 Score=14.82 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=78.1
Q ss_pred EEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCC---HHHH
Q ss_conf 4999976977943914899999999881999546999971337750999899999999988989999188776---4548
Q gi|254780468|r 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK---CSLL 870 (963)
Q Consensus 794 ~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g---~ssl 870 (963)
..|.|=..+ -.|-...+.....|++++++ +|+.-.++...++.+.++++.....|+++-|---|.. ..-.
T Consensus 13 ~kV~IimGS--~SD~~~~~~~~~~L~~~gI~-----~e~~V~SAHRtp~~l~~~~~~~~~~~~~viIa~AG~aa~LpGvv 85 (174)
T 3kuu_A 13 VKIAIVMGS--KSDWATMQFAADVLTTLNVP-----FHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGML 85 (174)
T ss_dssp CCEEEEESS--GGGHHHHHHHHHHHHHTTCC-----EEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHH
T ss_pred CCEEEEECC--HHHHHHHHHHHHHHHHCCCC-----EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHH
T ss_conf 948999797--86899999999999983998-----58888703238789999999998638749998346765663047
Q ss_pred HHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Q ss_conf 8897279989997168853999457999999999999779809997039989
Q gi|254780468|r 871 SYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 (963)
Q Consensus 871 ~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~ 922 (963)
+.+..+|+=-|-++.+-..+ ..-+-|+++|-.+..+-+++-|.....
T Consensus 86 Aa~T~~PVIgvP~~~~~l~G-----~d~llS~vqMP~GvPVatv~i~~~ga~ 132 (174)
T 3kuu_A 86 AAKTLVPVLGVPVQSAALSG-----VDSLYSIVQMPRGIPVGTLAIGKAGAA 132 (174)
T ss_dssp HHTCSSCEEEEEECCTTTTT-----HHHHHHHHTCCTTSCCEECCSSHHHHH
T ss_pred HHHCCCCEEECCCCCCCCCC-----CCHHHHHHHCCCCCCCEEEECCCCCHH
T ss_conf 66165435611344456676-----103889971878898568864875348
No 255
>3mgl_A Sulfate permease family protein; PSI2, MCSG, structural genomics, protein structure initiative; 2.25A {Vibrio cholerae o1 biovar el tor}
Probab=46.60 E-value=8.3 Score=14.01 Aligned_cols=90 Identities=8% Similarity=0.021 Sum_probs=63.9
Q ss_pred CCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHH
Q ss_conf 99954699997133775099989999999998898999918877645488897279989997168853999457999999
Q gi|254780468|r 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRS 901 (963)
Q Consensus 822 ~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~s 901 (963)
.+|++-+++++.......+.+...+.+ .+.. =++..|=||-+=+..+|...-..+..
T Consensus 16 ~~p~~v~i~~~~G~L~F~~a~~~~~~l---~~~~--------------------~~~~~vIlD~~~v~~iD~sg~~~l~~ 72 (130)
T 3mgl_A 16 TLPRELAVYALEGPFFFAAAETFERVM---GSIQ--------------------ETPQILILRLKWVPFMDITGIQTLEE 72 (130)
T ss_dssp SCCTTEEEEEEESSCCHHHHHHHHHHH---HHSS--------------------SCCSEEEEEEEECCCCCHHHHHHHHH
T ss_pred CCCCCEEEEEECCEEEHHHHHHHHHHH---HHHC--------------------CCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 699988999975698546599999999---9724--------------------79999999773798768689999999
Q ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 9999997798099970399899998998099899
Q gi|254780468|r 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 902 ii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
++.-++..|++++..|+ +..-.+.|...|..-.
T Consensus 73 ~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~ 105 (130)
T 3mgl_A 73 MIQSFHKRGIKVLISGA-NSRVSQKLVKAGIVKL 105 (130)
T ss_dssp HHHHHHHTTCEEEEECC-CHHHHHHHHHTTHHHH
T ss_pred HHHHHHHCCCEEEEEEC-CHHHHHHHHHCCCHHH
T ss_conf 99999977998999828-8899999998699655
No 256
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=46.00 E-value=8.5 Score=13.94 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=11.8
Q ss_pred EEEEEEEECCCCCEEEEEEEEE
Q ss_conf 8722676879998899999998
Q gi|254780468|r 496 IIRIRPMSNSNGDILRYIGIAN 517 (963)
Q Consensus 496 ~~~~~~i~~~~g~~~~~~g~~~ 517 (963)
.+.++-+++.+|++..+.|+-.
T Consensus 26 ~v~G~~l~d~nG~~~~lrGvN~ 47 (345)
T 3jug_A 26 YVDGNTLYDANGQPFVMKGINH 47 (345)
T ss_dssp EEETTEEECTTSCBCCCEEEEE
T ss_pred EEECCEEECCCCCEEEEECCCC
T ss_conf 9979999989999999862587
No 257
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=45.88 E-value=8.5 Score=13.93 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=78.7
Q ss_pred EEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 99997697794391489999999988199954699997133775099989999999998898999918877645488897
Q gi|254780468|r 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 (963)
Q Consensus 795 ~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~ 874 (963)
++|+-+.+.+ -.+..++-+. +... ..++++-|+-+ .+ ....++.|++.|+++.+.-.=+--. .-.-.
T Consensus 62 ~is~ev~~~~--~~~m~~~a~~-l~~~---~~nv~IKIP~t-----~~-G~~a~~~L~~~Gi~vn~T~vfs~~Q-a~~A~ 128 (223)
T 1wx0_A 62 PVSAEVTALE--AEAMVAEGRR-LAAI---HPNIVVKLPTT-----EE-GLKACKRLSAEGIKVNMTLIFSANQ-ALLAA 128 (223)
T ss_dssp CEEEECCCSS--HHHHHHHHHH-HHHH---CTTEEEEEESS-----HH-HHHHHHHHHHTTCCEEEEEECSHHH-HHHHH
T ss_pred CEEEEECCCC--HHHHHHHHHH-HHHH---CCCEEEEECCC-----HH-HHHHHHHHHCCCCCEEEEEECCHHH-HHHHH
T ss_conf 8799983697--8999999999-9863---77559995477-----87-8999998611596527889758999-99999
Q ss_pred HCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 2799899971688539994579999999999997--798099970399899998998099899
Q gi|254780468|r 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN--IETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 875 ~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~--lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
....+||-.=-.=+.+...+...+++.+.++.+. .+.++++-++-+.++...+...|||++
T Consensus 129 ~aga~yispyvgR~~d~g~d~~~~i~~~~~~~~~~~~~t~il~AS~r~~~~~~~~~~~G~d~~ 191 (223)
T 1wx0_A 129 RAGASYVSPFLGRVDDISWDGGELLREIVEMIQVQDLPVKVIAASIRHPRHVTEAALLGADIA 191 (223)
T ss_dssp HTTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEEBCCCSHHHHHHHHHTTCSEE
T ss_pred HCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 859929997210022236786246899999998518871167522588999999998699999
No 258
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=45.49 E-value=8.6 Score=13.89 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=65.5
Q ss_pred CEEEEEECCHHHHCCCHH---HHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 849999769779439148---99999999881999546999971337750999899999999988989999188776454
Q gi|254780468|r 793 PIFILINIASKDLLDNEL---CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 (963)
Q Consensus 793 ~~~vsINlS~~~l~~~~f---~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ss 869 (963)
.+-+-+|++. +.+.++ .+.+....+..+-.+-++ |-|+..+.+ ++..+.++...+.|
T Consensus 111 EID~Vin~~~--l~~g~~~~v~~ei~~v~~a~~~~~lKV---IlEt~~L~~-~ei~~a~~ia~~aG-------------- 170 (239)
T 3ngj_A 111 EVDMVINIGM--VKAKKYDDVEKDVKAVVDASGKALTKV---IIECCYLTN-EEKVEVCKRCVAAG-------------- 170 (239)
T ss_dssp EEEEECCHHH--HHTTCHHHHHHHHHHHHHHHTTSEEEE---ECCGGGSCH-HHHHHHHHHHHHHT--------------
T ss_pred EEEEECCHHH--HHCCCHHHHHHHHHHHHHHCCCCEEEE---EEECCCCCC-HHHHHHHHHHHHCC--------------
T ss_conf 8987425777--756778999999999997458862788---872333683-99999999999869--------------
Q ss_pred HHHHHHCCCCEEEEEHHHHC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 88897279989997168853-9994579999999999997798099970399899998998099899
Q gi|254780468|r 870 LSYLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 870 l~~L~~l~~d~iKiD~sfv~-~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
+|+||-.-.|.. +..+++-.+++..+ ....|+|+ +=||-|.+++..+-++|++.+
T Consensus 171 --------adfIKTSTG~~~~gat~e~V~~m~~~~--~~~~giKa-sGGIrt~~~a~~~l~aGa~Ri 226 (239)
T 3ngj_A 171 --------AEYVKTSTGFGTHGATPEDVKLMKDTV--GDKALVKA-AGGIRTFDDAMKMINNGASRI 226 (239)
T ss_dssp --------CSEEECCCSSSSCCCCHHHHHHHHHHH--GGGSEEEE-ESSCCSHHHHHHHHHTTEEEE
T ss_pred --------CCEEEECCCCCCCCCCHHHHHHHHHHH--CCCEEEEC-CCCCCCHHHHHHHHHCCCCEE
T ss_conf --------785881588788899999999999996--87717977-179899999999998478487
No 259
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=44.68 E-value=8.8 Score=13.80 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=36.9
Q ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99999779809997039989999899809989940520689998999999985
Q gi|254780468|r 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 903 i~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
+..+|+.|++|.+=-|.++++...+.++|||.+-=.+ ++.+.+++++
T Consensus 217 ~~~~~~~gl~V~~WTVN~~~~~~~ll~~GVDGIiTD~------Pd~l~~vl~e 263 (285)
T 1xx1_A 217 RDSANGFINKIYYWSVDKVSTTKAALDVGVDGIMTNY------PNVLIGVLKE 263 (285)
T ss_dssp HTSTTCCCCEEEEECCCSHHHHHHHHHHTCSEEEESC------HHHHHHHHHS
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEECCC------HHHHHHHHHH
T ss_conf 9999877998999779989999999967989998598------9999999852
No 260
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=43.79 E-value=9.1 Score=13.70 Aligned_cols=127 Identities=16% Similarity=0.141 Sum_probs=77.9
Q ss_pred EEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 99976977943914899999999881999546999971337750999899999999988989999188776454888972
Q gi|254780468|r 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 (963)
Q Consensus 796 vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~ 875 (963)
+++-+.+ .+.-+.+.+...-.. .++++++-|+-+ . .-...++.|++.|+++.+.-.=+--..+ .-..
T Consensus 66 ~s~ev~~-----~~~~em~~~a~~i~~-~~~nv~VKIP~t-----~-~gl~ai~~L~~~Gi~~n~Tavfs~~Qa~-~Aa~ 132 (230)
T 1vpx_A 66 VSAEVVS-----LDYEGMVREARELAQ-ISEYVVIKIPMT-----P-DGIKAVKTLSAEGIKTNVTLVFSPAQAI-LAAK 132 (230)
T ss_dssp EEEECSC-----CSHHHHHHHHHHHHT-TCTTEEEEEESS-----H-HHHHHHHHHHHTTCCEEEEEECSHHHHH-HHHH
T ss_pred CEEEEEH-----HHHHHHHHHHHHHHC-CCCCEEEEECCC-----H-HHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHH
T ss_conf 4167548-----778988999999860-487618980574-----7-7899999960539956887506789999-9986
Q ss_pred CCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 799899971688539994579999999999997--798099970399899998998099899
Q gi|254780468|r 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN--IETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 876 l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~--lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
...+||=+=-+=+.+...+...+++.+.++.+. .+.++++-.+-+.++...+...|||.+
T Consensus 133 aga~yispf~gR~~d~g~d~~~~i~~~~~~~~~~~~~tkIL~AS~R~~~~i~~a~~~G~d~i 194 (230)
T 1vpx_A 133 AGATYVSPFVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAASIRHPMHVVEAALMGVDIV 194 (230)
T ss_dssp HTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEEBSCCSHHHHHHHHHHTCSEE
T ss_pred CCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 48954877751011146776166999999998468887899716389999999997699999
No 261
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=43.02 E-value=9.3 Score=13.61 Aligned_cols=87 Identities=8% Similarity=-0.068 Sum_probs=49.4
Q ss_pred EEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHC-----CCEEEE---ECCCCC
Q ss_conf 999976977943914899999999881999546999971337750999899999999988-----989999---188776
Q gi|254780468|r 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI-----GISLTL---DDFGTK 866 (963)
Q Consensus 795 ~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~-----G~~ial---DdFG~g 866 (963)
.++++.....-.++++...+.+.+.+.+.. .+-+..+.=...|++..+.+..+++. ++.+++ ||+|.+
T Consensus 137 ~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d----~I~l~DT~G~~~P~~v~~l~~~~~~~~~~~~~~~l~~H~Hn~~Gla 212 (325)
T 3eeg_A 137 EVEFFCEDAGRADQAFLARMVEAVIEAGAD----VVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLA 212 (325)
T ss_dssp EEEEEEETGGGSCHHHHHHHHHHHHHHTCS----EEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCC----EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH
T ss_conf 367730455420799999999999985999----9995466566175067899999987516998733788854874619
Q ss_pred HHHHHHHHHCCCCEEEEEHHH
Q ss_conf 454888972799899971688
Q gi|254780468|r 867 CSLLSYLGYIPFDTVKFNGSL 887 (963)
Q Consensus 867 ~ssl~~L~~l~~d~iKiD~sf 887 (963)
..+.-.-.+..+|+ ||.++
T Consensus 213 ~aN~l~A~~aG~~~--iD~si 231 (325)
T 3eeg_A 213 TANSLAALQNGARQ--VECTI 231 (325)
T ss_dssp HHHHHHHHHHTCCE--EEEBG
T ss_pred HHHHHHHHHCCCCC--CCCCC
T ss_conf 99999999839781--05564
No 262
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=42.08 E-value=9.6 Score=13.51 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC----------HHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999997798099970399----------899998998099899405206899989999999851611
Q gi|254780468|r 898 ILRSIIPMAKNIETTIIAKDIYG----------EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 (963)
Q Consensus 898 ~v~sii~~a~~lgi~viAegVE~----------~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~ 959 (963)
..+.+++.+|..|++|.+=.|.+ .++++.+.++|||++.=.+ ++++.+.+++..|-
T Consensus 216 ~~~~~v~~~~~~G~~v~~wTvn~~~~~~~~~~~~~~~~~l~~lGVdgI~TD~------P~~l~~~l~~~~~~ 281 (292)
T 3mz2_A 216 EVREVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDR------PIEVAEAISSLIPV 281 (292)
T ss_dssp HHHHHHHHHHHTTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEEESC------HHHHHHHHGGGSCS
T ss_pred CCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCEEEECC------HHHHHHHHHHHCCC
T ss_conf 5799999999879989998878667632113879999999976999999698------99999999860801
No 263
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=42.03 E-value=9.6 Score=13.50 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=10.3
Q ss_pred HHHHHHHHCCCHHHHHH
Q ss_conf 35788897799679989
Q gi|254780468|r 756 EFMLIAEELCMIKAINL 772 (963)
Q Consensus 756 ~fi~~ae~~gl~~~ld~ 772 (963)
.....+...++...++.
T Consensus 841 nl~~q~r~~~l~~~~~d 857 (1150)
T 3hbl_A 841 NLSQQAKSLGLGERFDE 857 (1150)
T ss_dssp HHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHCCCHHHHHH
T ss_conf 48999987384677999
No 264
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa}
Probab=40.83 E-value=10 Score=13.36 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHHHHCC
Q ss_conf 976899999999999607
Q gi|254780468|r 457 HINDRDNFRTILDSFVGY 474 (963)
Q Consensus 457 hp~D~~~~~~~l~~~~~~ 474 (963)
|.-|.+..++++....++
T Consensus 44 HAGD~~~m~~tv~lA~~~ 61 (252)
T 2x5e_A 44 HAGDPLTMRRAVELAVRH 61 (252)
T ss_dssp SSCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 567999999999999985
No 265
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=40.19 E-value=10 Score=13.29 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=10.5
Q ss_pred EEEEEEEECCCCCEEEEEEEEE
Q ss_conf 8722676879998899999998
Q gi|254780468|r 496 IIRIRPMSNSNGDILRYIGIAN 517 (963)
Q Consensus 496 ~~~~~~i~~~~g~~~~~~g~~~ 517 (963)
.+.+.-+.+.+|++..+.|+-+
T Consensus 11 ~V~G~~l~d~nG~~~~lrGvn~ 32 (464)
T 1wky_A 11 YVSGTTLYDANGNPFVMRGINH 32 (464)
T ss_dssp EEETTEEECTTSCBCCCEEEEE
T ss_pred EEECCEEECCCCCEEEEEEECC
T ss_conf 9979999999999999986057
No 266
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=40.05 E-value=10 Score=13.28 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHC--CCCEEEEE---HHHHCCC-CHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8999999999889899991-887764548889727--99899971---6885399-945799999999999977980999
Q gi|254780468|r 843 RSRLLLGRLRKIGISLTLD-DFGTKCSLLSYLGYI--PFDTVKFN---GSLMTGS-TEKRIAILRSIIPMAKNIETTIIA 915 (963)
Q Consensus 843 ~~~~~~~~l~~~G~~ialD-dFG~g~ssl~~L~~l--~~d~iKiD---~sfv~~~-~~~~~~~v~sii~~a~~lgi~viA 915 (963)
...+.++.+++.|++.++. +-+|..+.+..+... .+|+|=+. +.|-... .++--.-++.+- ...-++++.+
T Consensus 101 ~~~~~i~~i~~~g~k~Gial~p~t~~~~~~~~l~~~~~~d~vlim~V~PG~~GQ~f~~~~l~kI~~l~--~~~~~~~I~V 178 (228)
T 1h1y_A 101 NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALR--KKYPSLDIEV 178 (228)
T ss_dssp THHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHH--HHCTTSEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH--HCCCCCEEEE
T ss_conf 89999999997497311584489988999999865314565789985589888635704789999999--6699864999
Q ss_pred EECCCHHHHHHHHHCCCCEE-EC-CCCCCCCCHHHHHHHHHHHC
Q ss_conf 70399899998998099899-40-52068999899999998516
Q gi|254780468|r 916 KDIYGEIDIKELTRMGCDYI-QD-SHVASPLGFNSILKLLKERF 957 (963)
Q Consensus 916 egVE~~~~~~~l~~~G~d~~-QG-~~~~~P~~~~~~~~~l~~~~ 957 (963)
.|==+.+....+.+.|+|.+ .| +.|+.+-|. +..+.+++..
T Consensus 179 DGGI~~~~i~~l~~aGad~iV~GSaif~~~d~~-~~i~~lr~~i 221 (228)
T 1h1y_A 179 DGGLGPSTIDVAASAGANCIVAGSSIFGAAEPG-EVISALRKSV 221 (228)
T ss_dssp ESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHH-HHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH-HHHHHHHHHH
T ss_conf 668698889999986999999776987899999-9999999999
No 267
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=39.83 E-value=10 Score=13.25 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=7.1
Q ss_pred HHHHHHCCCCEEEEEHHH
Q ss_conf 888972799899971688
Q gi|254780468|r 870 LSYLGYIPFDTVKFNGSL 887 (963)
Q Consensus 870 l~~L~~l~~d~iKiD~sf 887 (963)
...+....+|-+-+-+.-
T Consensus 185 ~~~~~~~~vDG~LVG~as 202 (219)
T 2h6r_A 185 VKAALDLGAEGVLLASGV 202 (219)
T ss_dssp HHHHHTTTCCCEEESHHH
T ss_pred HHHHHCCCCCEEEEEEEE
T ss_conf 998524799889962044
No 268
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus JCSC1435}
Probab=39.71 E-value=10 Score=13.24 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=8.2
Q ss_pred CHHHEEEEEEHHH
Q ss_conf 9546999971337
Q gi|254780468|r 824 SPSRIKLSFSESV 836 (963)
Q Consensus 824 ~~~~l~lEitE~~ 836 (963)
..+++++++.|-.
T Consensus 329 ~~GKvVi~v~~~~ 341 (346)
T 3fbg_A 329 MIGKLVINLNEGH 341 (346)
T ss_dssp CCSEEEEEC----
T ss_pred CCCEEEEEECCCC
T ss_conf 8642999977888
No 269
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide mutase); acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=39.70 E-value=10 Score=13.24 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=79.3
Q ss_pred EEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHH
Q ss_conf 99976977943914899999999881999546999971337750999899999999988989999188776---454888
Q gi|254780468|r 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK---CSLLSY 872 (963)
Q Consensus 796 vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g---~ssl~~ 872 (963)
|+|=+.+ =.|-...+.....|++++++ +|+.-.++...++.+.++++...+.|+++-|---|.. .+-.+.
T Consensus 24 V~IimGS--~SD~~~~~~a~~~L~~~gI~-----~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aa~LpGvva~ 96 (182)
T 1u11_A 24 VGIIMGS--QSDWETMRHADALLTELEIP-----HETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAA 96 (182)
T ss_dssp EEEEESS--GGGHHHHHHHHHHHHHTTCC-----EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred EEEEECC--HHHHHHHHHHHHHHHHCCCC-----EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 9999486--75699999999999984996-----5888883304858899999999966986999933787657764001
Q ss_pred HHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Q ss_conf 972799899971688539994579999999999997798099970399899998
Q gi|254780468|r 873 LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 (963)
Q Consensus 873 L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~ 926 (963)
+..+|+=-|-++.+...+ ..-+-|+++|-.+..+-+++-|+.+..-+..
T Consensus 97 ~t~~PVIgvP~~~~~l~G-----~DsLlS~vqMP~GvPvatvavg~~~~~NAAl 145 (182)
T 1u11_A 97 WTRLPVLGVPVESRALKG-----MDSLLSIVQMPGGVPVGTLAIGASGAKNAAL 145 (182)
T ss_dssp HCSSCEEEEEECCTTTTT-----HHHHHHHHCCCTTSCCEECCSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCC-----CCCHHHHHHCCCCCCCEEEEECCCCHHHHHH
T ss_conf 468858998456677876-----3308899757648983588725765388999
No 270
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus}
Probab=39.45 E-value=10 Score=13.21 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=6.9
Q ss_pred HHHHHHHHCCCCCEEEEEECC
Q ss_conf 999999834899769998064
Q gi|254780468|r 595 LTRRIGELLKFPDILARLSGN 615 (963)
Q Consensus 595 ia~~L~~~~~~~~~laR~~gd 615 (963)
.++.|++.+.....++=++|+
T Consensus 10 ~~~~i~~~~~~~p~igII~GS 30 (285)
T 3khs_A 10 TAAWLNKQLQIRPVLGIVCGS 30 (285)
T ss_dssp HHHHHHTTCSSCCCEEEEECT
T ss_pred HHHHHHHHCCCCCCEEEEECC
T ss_conf 999999857999858999558
No 271
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=39.36 E-value=10 Score=13.20 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=66.9
Q ss_pred EEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHH
Q ss_conf 99976977943914899999999881999546999971337750999899999999988989999188776---454888
Q gi|254780468|r 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK---CSLLSY 872 (963)
Q Consensus 796 vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g---~ssl~~ 872 (963)
|.|=.-+ -.|-...+.....+++++++ +|+.-......++.+.++++.+++.|+++-|---|.. .+-.+-
T Consensus 16 V~Ii~GS--~SD~~~~~~a~~~L~~~Gi~-----~e~~V~SaHR~p~~l~~~~~~~~~~~~~ViIa~AG~aaaLpgvvA~ 88 (183)
T 1o4v_A 16 VGIIMGS--DSDLPVMKQAAEILEEFGID-----YEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVAS 88 (183)
T ss_dssp EEEEESC--GGGHHHHHHHHHHHHHTTCE-----EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred EEEEECC--HHHHHHHHHHHHHHHHCCCC-----EEEEEEHHHHCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEE
T ss_conf 9999685--74399999999999982991-----7998743750938899999999977985999964676688754887
Q ss_pred HHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9727998999716885399945799999999999977980999
Q gi|254780468|r 873 LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA 915 (963)
Q Consensus 873 L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viA 915 (963)
+..+|+=-|-...+.. +...-+-|+++|+...++-|++
T Consensus 89 ~t~~PVIgVP~~~~~~-----~G~daLlS~lqMP~gvpVatV~ 126 (183)
T 1o4v_A 89 ITHLPVIGVPVKTSTL-----NGLDSLFSIVQMPGGVPVATVA 126 (183)
T ss_dssp HCSSCEEEEEECCTTT-----TTHHHHHHHHTCCTTCCCEECC
T ss_pred ECCCEEEEECCCCCCC-----CCHHHHHHHHHCCCCCCEEEEE
T ss_conf 3261178611577788-----7677788760188888767775
No 272
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=38.43 E-value=11 Score=13.09 Aligned_cols=10 Identities=30% Similarity=0.069 Sum_probs=4.0
Q ss_pred HHHHHHCCCC
Q ss_conf 9998708974
Q gi|254780468|r 682 YHAKHRGGNH 691 (963)
Q Consensus 682 ~~Ak~~g~~~ 691 (963)
..||+.|...
T Consensus 100 ~~ak~~g~~i 109 (186)
T 1m3s_A 100 AKAKSLHGIV 109 (186)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHHCCCEE
T ss_conf 9999879959
No 273
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=38.42 E-value=11 Score=13.09 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 09998999999999889899991
Q gi|254780468|r 839 GNPERSRLLLGRLRKIGISLTLD 861 (963)
Q Consensus 839 ~~~~~~~~~~~~l~~~G~~ialD 861 (963)
...+.+.++++.+..-++++++|
T Consensus 152 ~~~~~~~~li~~~~~~~vg~~~D 174 (278)
T 1i60_A 152 NTFEQAYEIVNTVNRDNVGLVLD 174 (278)
T ss_dssp CSHHHHHHHHHHHCCTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 88899778998752201230205
No 274
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=36.87 E-value=11 Score=12.92 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=11.7
Q ss_pred EEEEEECCCCCCEEEEEE
Q ss_conf 999985598883359999
Q gi|254780468|r 89 AVFALANTSDSQLERLIV 106 (963)
Q Consensus 89 ~~~~l~N~s~~~~~~~L~ 106 (963)
++|+|--|+.+.++..|.
T Consensus 146 v~F~lwAP~A~~V~l~l~ 163 (877)
T 3faw_A 146 VEASLWSPSADSVTMIIY 163 (877)
T ss_dssp EEEEEECTTCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEE
T ss_conf 999999999998999997
No 275
>2wz1_A Guanylate cyclase soluble subunit beta-1; alternative splicing, lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-binding, GUCY1B3; 1.63A {Homo sapiens}
Probab=36.50 E-value=11 Score=12.87 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=50.8
Q ss_pred CEEEEEEECCCHHHHHHHCCHHHH----HHHHHHHHHHHHHHCC----CCCEEEEEECCCEEECCCCC-CC---HHHHHH
Q ss_conf 489999976785798884277889----9999999999998348----99769998064102025566-99---899999
Q gi|254780468|r 565 RPTVMVIDIDKYKKINDVLGIAVG----DDVLVSLTRRIGELLK----FPDILARLSGNRFGIILISE-NN---SLKIAD 632 (963)
Q Consensus 565 ~~~l~~idid~fk~iN~~~G~~~g----D~lL~~ia~~L~~~~~----~~~~laR~~gdeFaill~~~-~~---~~~~~~ 632 (963)
..++++.||-+|..+-+++....+ -++|..+-..+...+. ....+-.+-||.+..+.... .. ...+..
T Consensus 12 ~vtVlF~Di~gfT~l~e~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~g~~~k~~GD~i~a~f~~p~~~~~~a~~a~~ 91 (219)
T 2wz1_A 12 NVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSICH 91 (219)
T ss_dssp EEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSCCTTHHHHHHH
T ss_pred CEEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 68999998288069998679744499999999999999999999862677539996474289986799717789999999
Q ss_pred HHHHHHHHHHCEEEECC--EEEEEEEEEEEEEC
Q ss_conf 87655543101155254--67999999877645
Q gi|254780468|r 633 FAIAMRKSIAMPINLLE--REITVTASIGFASW 663 (963)
Q Consensus 633 ~~~~~~~~~~~~~~~~~--~~i~~t~siGi~~~ 663 (963)
.+..+.+..... ...+ ..+.+.++.|-+.+
T Consensus 92 ~a~~~~~~~~~~-~~~~~~l~~riGih~G~v~~ 123 (219)
T 2wz1_A 92 LALDMMEIAGQV-QVDGESVQITIGIHTGEVVT 123 (219)
T ss_dssp HHHHHHHHHTTC-EETTEECCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHH-HHHCCEEEEEEEEEECCEEE
T ss_conf 988888877655-42021024654443567488
No 276
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=36.05 E-value=12 Score=12.82 Aligned_cols=131 Identities=13% Similarity=0.031 Sum_probs=72.6
Q ss_pred HCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH-C-CCEEEEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf 4391489999999988199954699997133775099989999999998-8-9899991887764548889727998999
Q gi|254780468|r 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-I-GISLTLDDFGTKCSLLSYLGYIPFDTVK 882 (963)
Q Consensus 805 l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~-~-G~~ialDdFG~g~ssl~~L~~l~~d~iK 882 (963)
..+.+=...+.+.+.+.+++ ++|||=+ . +.+.+.++.+++ . .+.++..-.=+ -..+....+...+++
T Consensus 34 ~~~~~~a~~~a~al~~~Gi~----~iEitl~----t-p~a~e~i~~l~~~~p~~~iGaGTV~~-~~~~~~a~~aGa~Fi- 102 (225)
T 1mxs_A 34 IAREEDILPLADALAAGGIR----TLEVTLR----S-QHGLKAIQVLREQRPELCVGAGTVLD-RSMFAAVEAAGAQFV- 102 (225)
T ss_dssp CSCGGGHHHHHHHHHHTTCC----EEEEESS----S-THHHHHHHHHHHHCTTSEEEEECCCS-HHHHHHHHHHTCSSE-
T ss_pred CCCHHHHHHHHHHHHHCCCC----EEEEECC----C-CHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHCCCCEE-
T ss_conf 59999999999999987998----8999589----9-40999999999749970786530367-999999997799899-
Q ss_pred EEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 71688539994579999999999997798099970399899998998099899405206899989999999851611
Q gi|254780468|r 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 (963)
Q Consensus 883 iD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~ 959 (963)
.+|. +-..+++.|++.|+.+ ..||-|..+.....+.||+.+.=| =+..+....+.+-++.-+|-
T Consensus 103 --------vsP~---~~~~v~~~a~~~~i~~-iPGv~TpsEi~~A~~~G~~~vK~F-PA~~~Gg~~~lkal~~p~p~ 166 (225)
T 1mxs_A 103 --------VTPG---ITEDILEAGVDSEIPL-LPGISTPSEIMMGYALGYRRFKLF-PAEISGGVAAIKAFGGPFGD 166 (225)
T ss_dssp --------ECSS---CCHHHHHHHHHCSSCE-ECEECSHHHHHHHHTTTCCEEEET-THHHHTHHHHHHHHHTTTTT
T ss_pred --------ECCC---CCHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHCCCCEEEEC-CCCCCCCHHHHHHHCCCCCC
T ss_conf --------8898---9599999998659972-578699899999998699818776-40102799999864065667
No 277
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=35.98 E-value=12 Score=12.81 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=57.8
Q ss_pred HHHHHHHHHCCCCHHHEEEEEE-H-H------HHHCCHHHHHHHHHHHHHC--CCEEEEECC-CCCHHHHHHHHH-----
Q ss_conf 9999999881999546999971-3-3------7750999899999999988--989999188-776454888972-----
Q gi|254780468|r 812 EGMQALISKTLYSPSRIKLSFS-E-S------VVMGNPERSRLLLGRLRKI--GISLTLDDF-GTKCSLLSYLGY----- 875 (963)
Q Consensus 812 ~~l~~~l~~~~~~~~~l~lEit-E-~------~~~~~~~~~~~~~~~l~~~--G~~ialDdF-G~g~ssl~~L~~----- 875 (963)
+.+.+.+....-.++|+.+-.. + . +.-.||+.+...++.+++. |-++.+= | +.+++....+..
T Consensus 297 ~~i~~~l~~f~gv~~R~e~v~~~~~~~i~vidDYAHnP~ai~a~l~~l~~~~~~~~ii~v-f~~~~~~r~~~~~~~~~~a 375 (469)
T 1j6u_A 297 APVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVI-FQPHRYSRLEREDGNFAKA 375 (469)
T ss_dssp HHHHHHHHHCCCCTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCSSSEEEEE-ECCBC--------CHHHHH
T ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCCCCHHHHHHHHHHH
T ss_conf 999988750478788447998628888346640468989999999999976589828999-9798886467778999999
Q ss_pred -CCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Q ss_conf -7998999716885399945799999999999977980999703998999989
Q gi|254780468|r 876 -IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 (963)
Q Consensus 876 -l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l 927 (963)
=..|.|=+-..+-+..++....--+.+.+..+..+..++. +++.+++...
T Consensus 376 ~~~aD~vilt~~~~~~E~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~i~~~ 426 (469)
T 1j6u_A 376 LQLADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLGKEAYF--VEKLPELEKV 426 (469)
T ss_dssp HTTSSEEEECCCBC---------CHHHHHHHHHHTTCCEEE--CCSGGGHHHH
T ss_pred HHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE--CCCHHHHHHH
T ss_conf 97099999999889988754587899999999846998598--0999999999
No 278
>2qde_A Mandelate racemase/muconate lactonizing enzyme family protein; PSI-II, NYSGXRC, enolase, structural genomics, protein structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=35.31 E-value=12 Score=12.74 Aligned_cols=112 Identities=14% Similarity=0.079 Sum_probs=67.6
Q ss_pred CCCCEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH-CCCEEEEECCCCCHH
Q ss_conf 8998499997697794391489999999988199954699997133775099989999999998-898999918877645
Q gi|254780468|r 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-IGISLTLDDFGTKCS 868 (963)
Q Consensus 790 ~~~~~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~-~G~~ialDdFG~g~s 868 (963)
++..+.+-.|- --+.+-...+.+.++++++. .+|=+ ...++.+.. +++++ .++.|+.|.=-.+..
T Consensus 188 ~~~~l~vDaN~----~~~~~~A~~~~~~l~~~~~~----wiEeP--~~~~d~~~l----~~l~~~~~ipia~dEs~~~~~ 253 (397)
T 2qde_A 188 DDVDLFIDING----AWTYDQALTTIRALEKYNLS----KIEQP--LPAWDLDGM----ARLRGKVATPIYADESAQELH 253 (397)
T ss_dssp TTSCEEEECTT----CCCHHHHHHHHHHHGGGCCS----CEECC--SCTTCHHHH----HHHHTTCSSCEEESTTCCSHH
T ss_pred CCCEEECCCCC----CCCHHHHHHHHHHHHHCCCC----CCCCC--CCCCCHHHH----HHHHHCCCCCCCCCEEEEEHH
T ss_conf 98589825677----64789999985557761980----33246--674344666----665421478850661002046
Q ss_pred HHHHHHHC-CCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCC
Q ss_conf 48889727-99899971688539994579999999999997798099970-399
Q gi|254780468|r 869 LLSYLGYI-PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD-IYG 920 (963)
Q Consensus 869 sl~~L~~l-~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAeg-VE~ 920 (963)
.+..+.+- -+|++.+|-+.+.++.+-. .++.+|+..|++++--+ .|+
T Consensus 254 d~~~~i~~~~~d~v~~d~~~~GGit~~~-----~i~~~A~~~gi~~~~~~~~~s 302 (397)
T 2qde_A 254 DLLAIINKGAADGLMIKTQKAGGLLKAQ-----RWLTLARLANLPVICGCMVGS 302 (397)
T ss_dssp HHHHHHHHTCCSEEEECHHHHTSHHHHH-----HHHHHHHHHTCCEEECCCSCC
T ss_pred HHHHHHHCCCCCEEECCCCCCCHHHHHH-----HHHHHHHHCCCCEEECCCCCC
T ss_conf 5999986578672421765278299999-----999999986998886588755
No 279
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae}
Probab=35.03 E-value=12 Score=12.70 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7532406699999999999987553389848999997678579888427788999999999999983489976999
Q gi|254780468|r 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 (963)
Q Consensus 536 D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~~l~~idid~fk~iN~~~G~~~gD~lL~~ia~~L~~~~~~~~~laR 611 (963)
+..+|+||...|...+...+... ......++.++|-...+.+|.+| +..-.+.|.++-
T Consensus 13 ~~~~~lp~~~~i~~~i~~~l~~~--~~~~ev~i~~v~~~~m~~LN~~~----------------r~kd~~TDVLSF 70 (154)
T 1xax_A 13 ENIEGLPTEEQIVQWATGAVQPE--GNEVEMTVRIVDEAESHELNLTY----------------RGKDRPTNVLSF 70 (154)
T ss_dssp SSCSSCCTHHHHHHHHHHHHSSS--CCCEEEEEEECCHHHHHHHHHHH----------------TCCCSSCSEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEEEECHHHHHHHHHHH----------------HCCCCCCCEEEE
T ss_conf 78658989999999999999860--99769999998889999999999----------------389999838886
No 280
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=34.74 E-value=12 Score=12.67 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEH
Q ss_conf 39148999999998819995469999713377509998999999999889899991887764548889727998999716
Q gi|254780468|r 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 (963)
Q Consensus 806 ~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~ 885 (963)
.-..+-..+.+.|.+.+.+ -++++ .+++.....++..+..|+.+-.-|+ ++..-|++..++--+
T Consensus 10 G~g~~g~~l~~~L~~~~~~--v~vId-------~~~e~~~~~~~~~~~~~~~vi~GD~----~~~~~L~~a~i~~a~--- 73 (153)
T 1id1_A 10 GHSILAINTILQLNQRGQN--VTVIS-------NLPEDDIKQLEQRLGDNADVIPGDS----NDSSVLKKAGIDRCR--- 73 (153)
T ss_dssp CCSHHHHHHHHHHHHTTCC--EEEEE-------CCCHHHHHHHHHHHCTTCEEEESCT----TSHHHHHHHTTTTCS---
T ss_pred CCCHHHHHHHHHHHHCCCC--EEEEE-------CCHHHHHHHHHHHHCCCCEEEEECC----CCHHHHHHCCCCCCC---
T ss_conf 9888999999999977998--89997-------8867789999985438987999167----999999757988338---
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 8853999457999999999999779--8099970399899998998099899
Q gi|254780468|r 886 SLMTGSTEKRIAILRSIIPMAKNIE--TTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 886 sfv~~~~~~~~~~v~sii~~a~~lg--i~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
.++--.+.+...+ .++..+++++ +++||. +.+.+....|+++|+|++
T Consensus 74 ~vi~~t~~d~~n~--~~~l~~r~~~~~~~iia~-~~~~~~~~~l~~~G~d~v 122 (153)
T 1id1_A 74 AILALSDNDADNA--FVVLSAKDMSSDVKTVLA-VSDSKNLNKIKMVHPDII 122 (153)
T ss_dssp EEEECSSCHHHHH--HHHHHHHHHTSSSCEEEE-CSSGGGHHHHHTTCCSEE
T ss_pred EEEECCCCHHHHH--HHHHHHHHHCCCCEEEEE-ECCHHHHHHHHHCCCCEE
T ss_conf 9999869879999--999999997899839999-889899999997798999
No 281
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19 delition, T protein; 1.41A {Campylobacter jejuni} PDB: 3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Probab=34.49 E-value=7.5 Score=14.36 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCE----EEEEEEECCCCCCE
Q ss_conf 33434554457888735----79999855988833
Q gi|254780468|r 71 ISRRIEVSASSIRHRGD----WAVFALANTSDSQL 101 (963)
Q Consensus 71 ~~~~~~~~~~~~~~s~~----W~~~~l~N~s~~~~ 101 (963)
..|....++ |+...+| =+...|.|......
T Consensus 47 i~~~~~np~-G~~~G~fiPYL~I~~~i~n~~t~~~ 80 (159)
T 3lzq_A 47 IHALKNNPN-GFPEGFWMPYLTIAYELKNTDTGAI 80 (159)
T ss_dssp EEECTTCTT-CCCTTCBCCSCEEEEEEEETTTCCE
T ss_pred CCCCCCCCC-CCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf 144558987-6887876566799999996899825
No 282
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=34.48 E-value=12 Score=12.64 Aligned_cols=100 Identities=15% Similarity=0.267 Sum_probs=53.9
Q ss_pred HHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCC------CEEEEEHHHHC------C---C-CHHHHHHH
Q ss_conf 7750999899999999988989999188776454888972799------89997168853------9---9-94579999
Q gi|254780468|r 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF------DTVKFNGSLMT------G---S-TEKRIAIL 899 (963)
Q Consensus 836 ~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~------d~iKiD~sfv~------~---~-~~~~~~~v 899 (963)
..+...+.+..+++.||+.|++++|=-=+...+....|.++.+ +.+-....... . . -|+...+.
T Consensus 212 ~~L~P~~gV~elL~~Lk~~GiklaIvTg~~~~~a~~~L~~lgL~~~Fd~~~ivt~ddv~~~~~~~~~~~~~~KP~P~~~~ 291 (384)
T 1qyi_A 212 IILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYI 291 (384)
T ss_dssp CBSSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 78660375999999999879989998898489999999984985448853243143333342346545688998969999
Q ss_pred HHH---------------------------------HHHHHHCCCEEEEE--ECCCHHHHHHHHHCCCCEE
Q ss_conf 999---------------------------------99999779809997--0399899998998099899
Q gi|254780468|r 900 RSI---------------------------------IPMAKNIETTIIAK--DIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 900 ~si---------------------------------i~~a~~lgi~viAe--gVE~~~~~~~l~~~G~d~~ 935 (963)
+++ +..|+..|+++|+- |.-.++....+.+.|+||+
T Consensus 292 ~al~~l~~~~~~~~~~~~~~~v~~~evl~VGDs~~Di~aAk~AG~~~IgVltG~~~~~~r~~le~~gAD~I 362 (384)
T 1qyi_A 292 AALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYV 362 (384)
T ss_dssp HHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEE
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCCEE
T ss_conf 99998297057788887615899661899838999999999859949999058888644779987899999
No 283
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=33.09 E-value=13 Score=12.48 Aligned_cols=13 Identities=0% Similarity=0.182 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999983
Q gi|254780468|r 590 DVLVSLTRRIGEL 602 (963)
Q Consensus 590 ~lL~~ia~~L~~~ 602 (963)
..++.+.+.+++.
T Consensus 375 ~f~~~~~~~v~~~ 387 (637)
T 1ji1_A 375 QIWSEFRNAVKGV 387 (637)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 6789998877600
No 284
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=32.76 E-value=13 Score=12.44 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=67.2
Q ss_pred CEEEEEECCHHHHCCCHHH-HHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 8499997697794391489-999999988199954699997133775099989999999998898999918877645488
Q gi|254780468|r 793 PIFILINIASKDLLDNELC-EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 (963)
Q Consensus 793 ~~~vsINlS~~~l~~~~f~-~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~ 871 (963)
.+-+-+|++...=.+.+.+ +.+....+..+-.+-++ |-|+..+. .++..+.++.....|
T Consensus 87 EID~V~n~~~~~~g~~~~v~~ei~~v~~a~~~~~lKV---IlEt~~L~-~~ei~~a~~~a~~aG---------------- 146 (220)
T 1ub3_A 87 EVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKV---ILETGYFS-PEEIARLAEAAIRGG---------------- 146 (220)
T ss_dssp EEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEE---ECCGGGSC-HHHHHHHHHHHHHHT----------------
T ss_pred EEEEEECCHHHHCCCHHHHHHHHHHHHHHCCCCEEEE---EEECCCCC-HHHHHHHHHHHHHHC----------------
T ss_conf 8999852046654788899999999986268985999---96226389-999999999999818----------------
Q ss_pred HHHHCCCCEEEEEHHHHC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 897279989997168853-9994579999999999997798099970399899998998099899
Q gi|254780468|r 872 YLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 872 ~L~~l~~d~iKiD~sfv~-~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
.|+||-.-.|.. +.+.++-.+++..+. ...|+| .+=||-|.+++..+.++|++.+
T Consensus 147 ------adfVKTSTG~~~~gat~e~v~~m~~~~~--~~~~iK-asGGIrt~~~a~~~l~aGa~Ri 202 (220)
T 1ub3_A 147 ------ADFLKTSTGFGPRGASLEDVALLVRVAQ--GRAQVK-AAGGIRDRETALRMLKAGASRL 202 (220)
T ss_dssp ------CSEEECCCSSSSCCCCHHHHHHHHHHHT--TSSEEE-EESSCCSHHHHHHHHHTTCSEE
T ss_pred ------CHHEEECCCCCCCCCCHHHHHHHHHHHC--CCCEEE-CCCCCCCHHHHHHHHHHHHHHC
T ss_conf ------5025855887889988999999999967--884387-6379899999999999730770
No 285
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=32.67 E-value=13 Score=12.43 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=75.2
Q ss_pred HCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHH-C-CCEEEEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf 4391489999999988199954699997133775099989999999998-8-9899991887764548889727998999
Q gi|254780468|r 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-I-GISLTLDDFGTKCSLLSYLGYIPFDTVK 882 (963)
Q Consensus 805 l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~-~-G~~ialDdFG~g~ssl~~L~~l~~d~iK 882 (963)
..+++=...+.+.+.+.++. ++|||=+. +.+.+.++.+++ . .+.++.--.= .-.......+...+++=
T Consensus 24 ~~~~~~a~~i~~al~~~Gi~----~iEItl~t-----p~a~~~i~~l~~~~p~~~iGaGTV~-~~e~~~~a~~aGa~Fiv 93 (214)
T 1wbh_A 24 VKKLEHAVPMAKALVAGGVR----VLNVTLRT-----ECAVDAIRAIAKEVPEAIVGAGTVL-NPQQLAEVTEAGAQFAI 93 (214)
T ss_dssp CSSGGGHHHHHHHHHHTTCC----EEEEESCS-----TTHHHHHHHHHHHCTTSEEEEESCC-SHHHHHHHHHHTCSCEE
T ss_pred CCCHHHHHHHHHHHHHCCCC----EEEEECCC-----HHHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHCCCCEEE
T ss_conf 89999999999999987998----89993798-----6799999999987899679524545-36899999981998998
Q ss_pred EEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 716885399945799999999999977980999703998999989980998994052068999899999998516110
Q gi|254780468|r 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 (963)
Q Consensus 883 iD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~~ 960 (963)
+|. +-..+++.|++.|+. +..||.|..+.....+.||+.+.=| =+..+....+++-++.-+|-.
T Consensus 94 ---------sP~---~~~~v~~~a~~~~i~-~iPGv~TpsEi~~A~~~G~~~vK~F-PA~~~Gg~~~ik~l~~p~p~i 157 (214)
T 1wbh_A 94 ---------SPG---LTEPLLKAATEGTIP-LIPGISTVSELMLGMDYGLKEFKFF-PAEANGGVKALQAIAGPFSQV 157 (214)
T ss_dssp ---------ESS---CCHHHHHHHHHSSSC-EEEEESSHHHHHHHHHTTCCEEEET-TTTTTTHHHHHHHHHTTCTTC
T ss_pred ---------CCC---CCHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHCCCCEEEEC-HHHHCCHHHHHHHHHHHCCCC
T ss_conf ---------589---999999999854997-5378498899999998599959976-024208098999874213377
No 286
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=32.65 E-value=13 Score=12.42 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH-HCCCCEEEEEH
Q ss_conf 91489999999988199954699997133775099989999999998898999918877645488897-27998999716
Q gi|254780468|r 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG-YIPFDTVKFNG 885 (963)
Q Consensus 807 ~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~-~l~~d~iKiD~ 885 (963)
+.+-...+.+.++++++ ..+|-+- ..++.+..+.+. ++.++.+++|.--.+...+..+. .--+|.+.+|.
T Consensus 206 ~~~~a~~~~~~l~~~~~----~~~E~P~--~~~d~~~~~~l~---~~~~ipia~dEs~~~~~~~~~~~~~~~~d~i~ik~ 276 (383)
T 3i4k_A 206 DRRTALHYLPILAEAGV----ELFEQPT--PADDLETLREIT---RRTNVSVMADESVWTPAEALAVVKAQAADVIALKT 276 (383)
T ss_dssp CHHHHHHHHHHHHHTTC----CEEESCS--CTTCHHHHHHHH---HHHCCEEEESTTCSSHHHHHHHHHHTCCSEEEECT
T ss_pred CHHHHHHHHHHHHHCCC----CEEECCC--CCCCHHHHHHHH---HHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999998765665395----3220477--722558899999---70689865886203255589999861367176676
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCCHH
Q ss_conf 88539994579999999999997798099970-39989
Q gi|254780468|r 886 SLMTGSTEKRIAILRSIIPMAKNIETTIIAKD-IYGEI 922 (963)
Q Consensus 886 sfv~~~~~~~~~~v~sii~~a~~lgi~viAeg-VE~~~ 922 (963)
+.+.++.+. ..++++|++.|+++..-+ .|+.-
T Consensus 277 ~~~GGit~~-----~~i~~~a~~~gi~~~~~~~~~s~i 309 (383)
T 3i4k_A 277 TKHGGLLES-----KKIAAIAEAGGLACHGATSLEGPI 309 (383)
T ss_dssp TTTTSHHHH-----HHHHHHHHHTTCEEEECCSCCCHH
T ss_pred CCCCCHHHH-----HHHHHHHHHCCCEEEECCCCCCHH
T ss_conf 468979999-----999999998799798579876699
No 287
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=32.53 E-value=13 Score=12.41 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 98999999999889
Q gi|254780468|r 842 ERSRLLLGRLRKIG 855 (963)
Q Consensus 842 ~~~~~~~~~l~~~G 855 (963)
+...++++.|+++|
T Consensus 393 ~dId~li~aL~~l~ 406 (406)
T 3cai_A 393 AEVDQLVRALASLG 406 (406)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998609
No 288
>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica}
Probab=32.45 E-value=13 Score=12.40 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=4.6
Q ss_pred HHHHHHCCCEEEE
Q ss_conf 9999988989999
Q gi|254780468|r 848 LGRLRKIGISLTL 860 (963)
Q Consensus 848 ~~~l~~~G~~ial 860 (963)
++.|++.|+++++
T Consensus 120 L~~Lk~~g~~~~i 132 (277)
T 3iru_A 120 FDKLIAQGIKVGG 132 (277)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHHCCCCEEE
T ss_conf 9998653475388
No 289
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M}
Probab=32.39 E-value=13 Score=12.39 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5302303578889779967998999999999999988
Q gi|254780468|r 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 (963)
Q Consensus 750 ~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~~ 786 (963)
|..+-..++..+++.|.-..+|.--+.++.+.+.+.+
T Consensus 246 GN~~tE~lv~~L~~~g~~~~id~~~l~~~~~~~~~l~ 282 (295)
T 1ydn_A 246 GNVDTVAVVEMLHEMGFETGLDLDRLRSAGLFTQALR 282 (295)
T ss_dssp CBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 6813999999998269987969999999999999966
No 290
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=32.39 E-value=13 Score=12.39 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 553023035788897799679989999999999999887158998
Q gi|254780468|r 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 (963)
Q Consensus 749 ~~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~~~~~~~~~~~ 793 (963)
||.++. ...-+++.|+..+++. +++.+..-++..+.++
T Consensus 302 GG~~sn--l~~q~~~~~~~~~~~e-----v~~~~~~v~~~~G~~~ 339 (464)
T 2nx9_A 302 GGMLTN--MESQLKQQNALDKLDL-----VLEEIPRVREELGFLP 339 (464)
T ss_dssp HHHHHH--HHHHHHTTSCGGGHHH-----HHHHHHHHHHHTTTCC
T ss_pred HHHHHH--HHHHHHHCCCHHHHHH-----HHHHHHHHHHHCCCCC
T ss_conf 216666--9999870540423999-----9999999997379997
No 291
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=32.27 E-value=13 Score=12.38 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=6.7
Q ss_pred HHHHHCCCCHHHEEEEE
Q ss_conf 99988199954699997
Q gi|254780468|r 816 ALISKTLYSPSRIKLSF 832 (963)
Q Consensus 816 ~~l~~~~~~~~~l~lEi 832 (963)
+.|++.+.. +.+++|+
T Consensus 248 ~~L~~~gy~-G~~~~E~ 263 (295)
T 3cqj_A 248 ETLKQSGYC-GPYLIEM 263 (295)
T ss_dssp HHHHHTTCC-SCEEECC
T ss_pred HHHHHHCCC-EEEEEEE
T ss_conf 999996997-1799972
No 292
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=31.77 E-value=11 Score=13.01 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=8.0
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999999988989999
Q gi|254780468|r 845 RLLLGRLRKIGISLTL 860 (963)
Q Consensus 845 ~~~~~~l~~~G~~ial 860 (963)
.++.+.|++.|+.++-
T Consensus 314 ~~~~~~l~~~~i~~~~ 329 (366)
T 1m32_A 314 SEFYRRLKEQGFVIYP 329 (366)
T ss_dssp HHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHCCCEEEC
T ss_conf 9999999977938978
No 293
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=31.50 E-value=14 Score=12.29 Aligned_cols=147 Identities=13% Similarity=0.106 Sum_probs=86.0
Q ss_pred EEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHH
Q ss_conf 49999769779439148999999998819995469999713377509998999999999889899991-88776454888
Q gi|254780468|r 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD-DFGTKCSLLSY 872 (963)
Q Consensus 794 ~~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialD-dFG~g~ssl~~ 872 (963)
+++-+.+.. .+|. +++... .+.+ ++.+++.. |+ ..+ ..+.++.+|+.|++.++- +.+|..+.+..
T Consensus 62 ~~~dvHLMv---~~P~--~~i~~~-~~~g--~d~I~~H~-E~--~~~---~~~~i~~i~~~g~~~Glal~p~T~~~~~~~ 127 (220)
T 2fli_A 62 LVFDCHLMV---VDPE--RYVEAF-AQAG--ADIMTIHT-ES--TRH---IHGALQKIKAAGMKAGVVINPGTPATALEP 127 (220)
T ss_dssp SEEEEEEES---SSGG--GGHHHH-HHHT--CSEEEEEG-GG--CSC---HHHHHHHHHHTTSEEEEEECTTSCGGGGGG
T ss_pred CCEEEEEEC---CCHH--HHHHHH-HHCC--CCEEEECH-HH--HCC---HHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 767999851---7988--889999-8659--97899532-33--208---899999998769869999648764036661
Q ss_pred HHHCCCCEEEEEHH---HHCC-CCHHHHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHHHHHCCCCEE-ECCCCCCCCC
Q ss_conf 97279989997168---8539-99457999999999999--7798099970399899998998099899-4052068999
Q gi|254780468|r 873 LGYIPFDTVKFNGS---LMTG-STEKRIAILRSIIPMAK--NIETTIIAKDIYGEIDIKELTRMGCDYI-QDSHVASPLG 945 (963)
Q Consensus 873 L~~l~~d~iKiD~s---fv~~-~~~~~~~~v~sii~~a~--~lgi~viAegVE~~~~~~~l~~~G~d~~-QG~~~~~P~~ 945 (963)
+.. .+|+|.+-.- |-.. ..+..-.-++.+..+.. ..++.+.+.|==+.+....+.+.|+|.+ .|-++=+--.
T Consensus 128 ~l~-~vd~vlvM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGin~~~i~~l~~~Gad~~V~GS~if~~~d 206 (220)
T 2fli_A 128 LLD-LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASD 206 (220)
T ss_dssp GTT-TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred HHH-HCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 675-5087989887566466555405789999999999752997069984677888799999879999997858868999
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999985
Q gi|254780468|r 946 FNSILKLLKE 955 (963)
Q Consensus 946 ~~~~~~~l~~ 955 (963)
..+..+.|++
T Consensus 207 ~~~~i~~Lr~ 216 (220)
T 2fli_A 207 LVSQVQTLRT 216 (220)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 294
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=31.25 E-value=14 Score=12.26 Aligned_cols=138 Identities=12% Similarity=0.161 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHCCCCEEEEE---
Q ss_conf 48999999998819995469999713377509998999999999889899991-88776454888972799899971---
Q gi|254780468|r 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD-DFGTKCSLLSYLGYIPFDTVKFN--- 884 (963)
Q Consensus 809 ~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialD-dFG~g~ssl~~L~~l~~d~iKiD--- 884 (963)
+-..++.... +.+. ..+++-. |+.-..+ ..+.++.+|+.|++.+|- +-+|..+.+..+... +|+|=+=
T Consensus 79 ~P~~~i~~~~-~~g~--d~i~~H~-E~~~~~~---~~~~i~~ik~~g~k~Glal~p~T~~~~i~~~l~~-vD~VlvMtV~ 150 (230)
T 1rpx_A 79 EPDQRVPDFI-KAGA--DIVSVHC-EQSSTIH---LHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDA-VDLVLIMSVN 150 (230)
T ss_dssp SHHHHHHHHH-HTTC--SEEEEEC-STTTCSC---HHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTT-CSEEEEESSC
T ss_pred CHHHHHHHHH-HHCC--CEEEEEC-CCCCCCC---HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH-CCEEEEEEEC
T ss_conf 5787699998-7189--5367513-3344226---9999999998798699996899998999999865-7989998876
Q ss_pred HHHHCC-CCHHHHHHHHHHHHH--HHHCCCEEEEEECCCHHHHHHHHHCCCCEE-EC-CCCCCCCCHHHHHHHHHH
Q ss_conf 688539-994579999999999--997798099970399899998998099899-40-520689998999999985
Q gi|254780468|r 885 GSLMTG-STEKRIAILRSIIPM--AKNIETTIIAKDIYGEIDIKELTRMGCDYI-QD-SHVASPLGFNSILKLLKE 955 (963)
Q Consensus 885 ~sfv~~-~~~~~~~~v~sii~~--a~~lgi~viAegVE~~~~~~~l~~~G~d~~-QG-~~~~~P~~~~~~~~~l~~ 955 (963)
+.|-.. -.+..-.-++.+..+ .+..+..+.+.|==+.+....+.+.|+|.+ .| +.|..| ...+..+.|++
T Consensus 151 PGf~GQ~f~~~~l~kI~~~~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~~-d~~~~i~~lk~ 225 (230)
T 1rpx_A 151 PGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAP-DYAEAIKGIKT 225 (230)
T ss_dssp TTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSS-CHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC-CHHHHHHHHHH
T ss_conf 8987544468899999999999986599358999888788999999986999999786886899-99999999997
No 295
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=31.05 E-value=14 Score=12.23 Aligned_cols=19 Identities=11% Similarity=-0.015 Sum_probs=10.2
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q ss_conf 5669989999987655543
Q gi|254780468|r 622 ISENNSLKIADFAIAMRKS 640 (963)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~ 640 (963)
.+..+++.+..+.+.+.+.
T Consensus 78 ~Dl~~~~~~~~~~~~~~~~ 96 (260)
T 3gem_A 78 GDFSCETGIMAFIDLLKTQ 96 (260)
T ss_dssp CCTTSHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHH
T ss_conf 3079999999999999997
No 296
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A
Probab=31.04 E-value=14 Score=12.23 Aligned_cols=129 Identities=15% Similarity=0.129 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHH
Q ss_conf 91489999999988199954699997133775099989999999998898999918877645488897279989997168
Q gi|254780468|r 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 (963)
Q Consensus 807 ~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~s 886 (963)
+.+-...+.+.+.+.+++ ++|+|=+. +.+.+.++.+++-++.++.--.=+ -..+....+...+++=
T Consensus 23 ~~~~a~~~~~al~~~Gi~----~iEitl~t-----p~a~~~i~~l~~~~~~iGaGTV~~-~~~~~~a~~aGa~Fiv---- 88 (207)
T 2yw3_A 23 GGEDLLGLARVLEEEGVG----ALEITLRT-----EKGLEALKALRKSGLLLGAGTVRS-PKEAEAALEAGAAFLV---- 88 (207)
T ss_dssp SCCCHHHHHHHHHHTTCC----EEEEECSS-----THHHHHHHHHTTSSCEEEEESCCS-HHHHHHHHHHTCSEEE----
T ss_pred CHHHHHHHHHHHHHCCCC----EEEEECCC-----CHHHHHHHHHCCCCCEEEEHHCCC-HHHHHHHHHCCCCEEE----
T ss_conf 999999999999987998----89996899-----229999998545785893112057-7899999980999898----
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 8539994579999999999997798099970399899998998099899405206899989999999851611
Q gi|254780468|r 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 (963)
Q Consensus 887 fv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~~ 959 (963)
+|. +-..+++.|++.|+. +..||-|..+....++.||+.+.=| =+..+....+.+-++.-||-
T Consensus 89 -----SP~---~~~~v~~~a~~~~i~-~iPGv~TpsEi~~A~~~G~~~vK~F-PA~~~Gg~~~lk~l~~p~p~ 151 (207)
T 2yw3_A 89 -----SPG---LLEEVAALAQARGVP-YLPGVLTPTEVERALALGLSALKFF-PAEPFQGVRVLRAYAEVFPE 151 (207)
T ss_dssp -----ESS---CCHHHHHHHHHHTCC-EEEEECSHHHHHHHHHTTCCEEEET-TTTTTTHHHHHHHHHHHCTT
T ss_pred -----CCC---CCHHHHHHHHHCCCC-EECCCCCHHHHHHHHHCCCCEEEEC-HHHHCCCHHHHHHHHCCCCC
T ss_conf -----588---869999999962997-5178799999999997699979866-03313789999765348998
No 297
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A*
Probab=30.73 E-value=14 Score=12.19 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 998999999999999998708974052011
Q gi|254780468|r 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 (963)
Q Consensus 668 ~~~~~ll~~Ad~Al~~Ak~~g~~~~~~~~~ 697 (963)
.+.++.++.|. .|++.|.+.+....+
T Consensus 87 ~~~~~ai~la~----~A~~~Gad~i~v~pP 112 (301)
T 3m5v_A 87 NATHEAVGLAK----FAKEHGADGILSVAP 112 (301)
T ss_dssp SSHHHHHHHHH----HHHHTTCSEEEEECC
T ss_pred CCHHHHHHHHH----HHHHCCCCEEEECCC
T ss_conf 67999999999----999769999871588
No 298
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=30.30 E-value=14 Score=12.14 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=5.0
Q ss_pred HHHHHCCCCCCCCC
Q ss_conf 35541146882214
Q gi|254780468|r 720 LYLVYHPIIRLMDE 733 (963)
Q Consensus 720 ~~l~~QPi~~~~~~ 733 (963)
+.+.|-|+-..-+|
T Consensus 163 iiIAYEPvWAIGtG 176 (255)
T 1b9b_A 163 VVIAYEPVWAIGTG 176 (255)
T ss_dssp CEEEECCGGGSSSS
T ss_pred EEEEECCEEECCCC
T ss_conf 89983545511689
No 299
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=30.00 E-value=14 Score=12.10 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=24.4
Q ss_pred HHHHHHHCCCCHHHEEE--EEE----HHH----HHCCHHHHHHHHHHHHHC
Q ss_conf 99999881999546999--971----337----750999899999999988
Q gi|254780468|r 814 MQALISKTLYSPSRIKL--SFS----ESV----VMGNPERSRLLLGRLRKI 854 (963)
Q Consensus 814 l~~~l~~~~~~~~~l~l--Eit----E~~----~~~~~~~~~~~~~~l~~~ 854 (963)
+.+.++.+.-.++|+.. |+. ... .-.++..+...++.+++.
T Consensus 313 i~~aL~~f~g~~~R~e~~~ei~~~~~~~~iiDDya~~p~si~a~l~al~~~ 363 (475)
T 1p3d_A 313 ILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREG 363 (475)
T ss_dssp HHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 997676437875311068899954897899976788979999999999865
No 300
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=29.87 E-value=14 Score=12.09 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCE-EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999977980-9997039989999899809989940520689998999999985
Q gi|254780468|r 896 IAILRSIIPMAKNIETT-IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 (963)
Q Consensus 896 ~~~v~sii~~a~~lgi~-viAegVE~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~ 955 (963)
..++.++...|-.+|.+ ++.|-=-|.+. -++|.. --++.+++.+++++
T Consensus 221 ~~~i~~la~AAva~GA~g~~IEkH~t~dk------alsD~~------~sl~p~el~~lv~~ 269 (276)
T 1vs1_A 221 RSLVPALAKAGLAAGADGLIVEVHPNPEE------ALSDAK------QQLTPGEFARLMGE 269 (276)
T ss_dssp GGGHHHHHHHHHHTTCSEEEEEBCSSGGG------CSSCGG------GCBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCC------CCCCCH------HCCCHHHHHHHHHH
T ss_conf 24369999999993999799995989655------899703------20899999999999
No 301
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 1v4n_A
Probab=29.37 E-value=15 Score=12.02 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=7.0
Q ss_pred CCCCHHHHHHHHC
Q ss_conf 0230357888977
Q gi|254780468|r 752 ISSSEFMLIAEEL 764 (963)
Q Consensus 752 i~p~~fi~~ae~~ 764 (963)
++-.+.+.++++.
T Consensus 223 ~sheeVl~~~~~~ 235 (270)
T 2a8y_A 223 VTAEEVTRVMAEN 235 (270)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH
T ss_conf 7899999999999
No 302
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=29.21 E-value=15 Score=12.00 Aligned_cols=36 Identities=3% Similarity=0.030 Sum_probs=17.2
Q ss_pred HHCCCEEEEEECCCHHHHHHHHHCCCCEE-ECCCCCC
Q ss_conf 97798099970399899998998099899-4052068
Q gi|254780468|r 907 KNIETTIIAKDIYGEIDIKELTRMGCDYI-QDSHVAS 942 (963)
Q Consensus 907 ~~lgi~viAegVE~~~~~~~l~~~G~d~~-QG~~~~~ 942 (963)
+..++.+.+.|--+.++...+.+.|+|++ -|--+-+
T Consensus 160 ~~~~~~i~~~gGi~~~~~~~~~~~Gad~iVVGr~I~~ 196 (216)
T 1q6o_A 160 SDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD 196 (216)
T ss_dssp HHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHT
T ss_pred HCCCCEEEECCCCCCCCHHHHHHCCCCEEEECHHHCC
T ss_conf 4689738768998803699999859999998825417
No 303
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structure initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Probab=29.17 E-value=15 Score=12.00 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=23.3
Q ss_pred HHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 9999998819995469999713377509998999999999889899991887
Q gi|254780468|r 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 (963)
Q Consensus 813 ~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG 864 (963)
.+...+++.+++... +..+.| +.+| ..+++.|.-+.+||=.
T Consensus 325 e~~~~l~~~~vp~~p-V~~~~e--~~~d--------pq~~~rg~~~~v~~p~ 365 (428)
T 1q7e_A 325 EAVAYLTQFDIPCAP-VLSMKE--ISLD--------PSLRQSGSVVEVEQPL 365 (428)
T ss_dssp HHHHHHGGGTCCEEE-CCCHHH--HHHC--------HHHHHTTSEEEEEETT
T ss_pred HHHHHHHCCCCEEEE-CCCHHH--HHHC--------HHHHHHCCEEEEECCC
T ss_conf 777765305831686-699999--8769--------7989709999977699
No 304
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=29.03 E-value=15 Score=11.98 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=17.7
Q ss_pred HHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCE
Q ss_conf 546999971337750999899999999988989
Q gi|254780468|r 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 (963)
Q Consensus 825 ~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ 857 (963)
++.++|..+---. .-|..++..+++.=..|+.
T Consensus 293 AD~iV~~~P~~w~-s~Pa~LK~wiDrV~~~g~a 324 (413)
T 3l9w_A 293 ADLIVWQHPMQWY-SIPPLLKLWIDKVFSHGWA 324 (413)
T ss_dssp CSEEEEEEECBTT-BCCHHHHHHHHHHSCBTTT
T ss_pred CCEEEEECCHHCC-CCCHHHHHHHHHHCCCCCC
T ss_conf 8958998861215-6649999999997236854
No 305
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp}
Probab=28.89 E-value=15 Score=11.96 Aligned_cols=124 Identities=13% Similarity=0.140 Sum_probs=77.2
Q ss_pred HHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHCCCCEEEEE---HHHHCC-CCHHHHHHH
Q ss_conf 5469999713377509998999999999889899991-88776454888972799899971---688539-994579999
Q gi|254780468|r 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD-DFGTKCSLLSYLGYIPFDTVKFN---GSLMTG-STEKRIAIL 899 (963)
Q Consensus 825 ~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialD-dFG~g~ssl~~L~~l~~d~iKiD---~sfv~~-~~~~~~~~v 899 (963)
+..+++-. |+ ..+ ..+.++.+|+.|++.+|- +-+|..+.+.++.. .+|+|-+= +.|-.. -.++.-.-+
T Consensus 110 ~d~I~~H~-E~--~~~---~~~~i~~ik~~g~k~Glalnp~T~i~~l~~~l~-~iD~VlvM~V~PGf~GQ~f~~~~l~kI 182 (246)
T 3inp_A 110 ATSIVFHP-EA--SEH---IDRSLQLIKSFGIQAGLALNPATGIDCLKYVES-NIDRVLIMSVNPGFGGQKFIPAMLDKA 182 (246)
T ss_dssp CSEEEECG-GG--CSC---HHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGG-GCSEEEEECSCTTC--CCCCTTHHHHH
T ss_pred CCEEEEEC-CC--CCC---HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH-HHCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 97999842-02--108---999999999819817999637778999988764-000356742169887611457799999
Q ss_pred HHHHHHHH--HCCCEEEEEECCCHHHHHHHHHCCCCEE-EC-CCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999--7798099970399899998998099899-40-5206899989999999851
Q gi|254780468|r 900 RSIIPMAK--NIETTIIAKDIYGEIDIKELTRMGCDYI-QD-SHVASPLGFNSILKLLKER 956 (963)
Q Consensus 900 ~sii~~a~--~lgi~viAegVE~~~~~~~l~~~G~d~~-QG-~~~~~P~~~~~~~~~l~~~ 956 (963)
+.+..+.. +.++.+.+.|==+.+....+.+.|+|.+ .| +.|..+ ...+..+.|++.
T Consensus 183 ~~l~~~~~~~~~~~~I~VDGGIn~~ti~~l~~aGad~~V~GSaiF~~~-d~~~~i~~lr~~ 242 (246)
T 3inp_A 183 KEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSD-SYKQTIDKMRDE 242 (246)
T ss_dssp HHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC-CHHHHHHHHHHH
T ss_conf 999988752477715999798799999999987999999786886899-999999999999
No 306
>2o6f_A 34 kDa membrane antigen; IG-fold, syphilis, metal-ION binding, dimer, membrane protein, protein binding; 1.63A {Treponema pallidum} PDB: 2o6d_A 2o6e_A 2o6c_A
Probab=28.48 E-value=10 Score=13.27 Aligned_cols=30 Identities=10% Similarity=-0.100 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCCCCCE----EEEEEEECCCCCC
Q ss_conf 33434554457888735----7999985598883
Q gi|254780468|r 71 ISRRIEVSASSIRHRGD----WAVFALANTSDSQ 100 (963)
Q Consensus 71 ~~~~~~~~~~~~~~s~~----W~~~~l~N~s~~~ 100 (963)
+.|.......|+....| =+...|.|.....
T Consensus 79 I~a~~~n~~~G~~~G~fIPYL~I~~~i~n~~t~~ 112 (189)
T 2o6f_A 79 IHANEAGKDLGYGVGDFVPYLRVVAFLQKHGSEK 112 (189)
T ss_dssp EEECGGGGGGTCCTTSBCCSCEEEEEEEETTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCE
T ss_conf 2555468867888888047779999999679975
No 307
>3b9e_A Chitinase A; TIM-barrel, glycosidase, hydrolase; 1.70A {Vibrio harveyi} PDB: 3b9a_A* 3b9d_A 3b8s_A
Probab=28.45 E-value=15 Score=11.91 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999999870897405201111106899999998743641
Q gi|254780468|r 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717 (963)
Q Consensus 668 ~~~~~ll~~Ad~Al~~Ak~~g~~~~~~~~~~~~~~~~~~~~~~l~~al~~ 717 (963)
++++.+-.+++. +|+.|-..+..+...... ..+...++++|..
T Consensus 526 Dd~~Si~~K~~y----ak~~gLGGvm~Weld~Dd---~~LLnAi~~~L~~ 568 (584)
T 3b9e_A 526 DDHRSVLAKGNY----AKSLGLAGLFSWEIDADN---GDILNAMHEGMAG 568 (584)
T ss_dssp CCHHHHHHHHHH----HHHHTCSEEEEECGGGCC---SHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHH----HHHCCCCEEEEEECCCCC---HHHHHHHHHHHCC
T ss_conf 999999999999----996799889999588897---2899999998479
No 308
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=28.41 E-value=15 Score=11.90 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=13.4
Q ss_pred CCEEEEEE-CCCHHHHHHHHHCCCCEE
Q ss_conf 98099970-399899998998099899
Q gi|254780468|r 910 ETTIIAKD-IYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 910 gi~viAeg-VE~~~~~~~l~~~G~d~~ 935 (963)
++.|||.| |-+..+....-.+|.|.+
T Consensus 352 ~vpiIADGGi~~~Gdi~KAla~GAd~V 378 (503)
T 1me8_A 352 YIPVCSDGGIVYDYHMTLALAMGADFI 378 (503)
T ss_dssp ECCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred CCCEECCCCCCCCCHHHHHHHHCCCEE
T ss_conf 885450577487567999998489889
No 309
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=28.36 E-value=15 Score=11.90 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=6.2
Q ss_pred CEEEEEEECC
Q ss_conf 4899999767
Q gi|254780468|r 565 RPTVMVIDID 574 (963)
Q Consensus 565 ~~~l~~idid 574 (963)
+.-++++|++
T Consensus 54 ~~dlvl~D~~ 63 (225)
T 3klo_A 54 SIQMLVIDYS 63 (225)
T ss_dssp GCCEEEEEGG
T ss_pred CCCEEEEECC
T ss_conf 8888997236
No 310
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A*
Probab=27.35 E-value=16 Score=11.77 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=32.2
Q ss_pred EEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEH--HHH------HCCHHHHHHHHHHHHH
Q ss_conf 9999769779439148999999998819995469999713--377------5099989999999998
Q gi|254780468|r 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE--SVV------MGNPERSRLLLGRLRK 853 (963)
Q Consensus 795 ~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE--~~~------~~~~~~~~~~~~~l~~ 853 (963)
+|-++.|. +-.+.+|+.-+.+.-...+. +-|.+|... ..+ .-.++.+..+++.+++
T Consensus 277 PVI~DpSH-s~G~r~~v~~larAAvA~Ga--DGlfiE~Hp~P~~AlsDg~q~l~l~~l~~ll~~l~~ 340 (350)
T 1vr6_A 277 PILVDPSH-SGGRRDLVIPLSRAAIAVGA--HGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKK 340 (350)
T ss_dssp CEEECHHH-HHCSGGGHHHHHHHHHHHTC--SEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHH
T ss_pred CEEECCCC-CCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 77989988-88775169999999998299--889997088801078884024799999999999999
No 311
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiative; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A
Probab=26.59 E-value=16 Score=11.67 Aligned_cols=14 Identities=0% Similarity=-0.161 Sum_probs=8.1
Q ss_pred CCCEEEEEEEEEEE
Q ss_conf 56223114899985
Q gi|254780468|r 108 PHYRLVGSHFFSPD 121 (963)
Q Consensus 108 ~~p~Ld~i~~y~~~ 121 (963)
..|.+-+++-|...
T Consensus 8 ~~~~~~~~~~~~~~ 21 (415)
T 2p3z_A 8 TLPKIKHVRAWFIG 21 (415)
T ss_dssp CCCBEEEEEEEEES
T ss_pred CCCEEEEEEEEEEE
T ss_conf 47702589999850
No 312
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleotide and nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=26.47 E-value=16 Score=11.65 Aligned_cols=135 Identities=20% Similarity=0.216 Sum_probs=87.8
Q ss_pred EEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHH
Q ss_conf 999976977943914899999999881999546999971337750999899999999988--989999188776454888
Q gi|254780468|r 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI--GISLTLDDFGTKCSLLSY 872 (963)
Q Consensus 795 ~vsINlS~~~l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~--G~~ialDdFG~g~ssl~~ 872 (963)
.++|-++. +..+.+.. +.+.++.+..+++.+.. .+......+++.+|+. ...+..-+..|. ....+
T Consensus 98 ~~SvG~~~------d~~~r~~~-l~~~~~~~d~I~iDvAh----G~~~~~~~~ik~ir~~~~~~~viaGNVaT~-e~a~~ 165 (336)
T 1ypf_A 98 SISVGVKE------DEYEFVQQ-LAAEHLTPEYITIDIAH----GHSNAVINMIQHIKKHLPESFVIAGNVGTP-EAVRE 165 (336)
T ss_dssp EEEECCSH------HHHHHHHH-HHHTTCCCSEEEEECSS----CCSHHHHHHHHHHHHHCTTSEEEEEEECSH-HHHHH
T ss_pred EEEEEECH------HHHHHHHH-HHHCCCCCCEEEEECCC----CCCHHHHHHHHHHHHHCCCCEEEECCCCCH-HHHHH
T ss_conf 99984178------78899999-98668985089986035----530337789999998779972785461678-99999
Q ss_pred HHHCCCCEEEEE---HHH-----HCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHCCCCEE-ECCCCCC
Q ss_conf 972799899971---688-----539994579999999999997798099970-399899998998099899-4052068
Q gi|254780468|r 873 LGYIPFDTVKFN---GSL-----MTGSTEKRIAILRSIIPMAKNIETTIIAKD-IYGEIDIKELTRMGCDYI-QDSHVAS 942 (963)
Q Consensus 873 L~~l~~d~iKiD---~sf-----v~~~~~~~~~~v~sii~~a~~lgi~viAeg-VE~~~~~~~l~~~G~d~~-QG~~~~~ 942 (963)
|.+...|.||+. +|- ...... .+.-+....+.++..+..+||.| +-+..+....-.+|.|++ -|-.|+.
T Consensus 166 L~~aGAD~VkVGIG~GS~CTTr~~tGvg~-p~~~~~~~~~~~~~~~~~iIaDGGi~~~Gdi~KAla~GAd~VMlG~~lAg 244 (336)
T 1ypf_A 166 LENAGADATKVGIGPGKVCITKIKTGFGT-GGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAG 244 (336)
T ss_dssp HHHHTCSEEEECSSCSTTCHHHHHHSCSS-TTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTT
T ss_pred HHHHCCCEEEECCCCCCCCCCCCCEEECC-CCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHCCC
T ss_conf 99839858996234887766742020056-63256778887653279657447757622899999707650000010155
No 313
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=26.18 E-value=16 Score=11.61 Aligned_cols=72 Identities=6% Similarity=-0.075 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCC--CEEEEECCC---CCHHHHHHHHHCCCCEE
Q ss_conf 9148999999998819995469999713377509998999999999889--899991887---76454888972799899
Q gi|254780468|r 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG--ISLTLDDFG---TKCSLLSYLGYIPFDTV 881 (963)
Q Consensus 807 ~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G--~~ialDdFG---~g~ssl~~L~~l~~d~i 881 (963)
.....+.+...++++++ ++++|-.-.....+.+....++...+..+ +++.+|-+= .|......++.+..-..
T Consensus 110 ~~~~l~~l~~~a~~~Gv---~l~lEnh~~~~~~~~~~~~~~~~~~~~~~~~vg~~~D~~h~~~~g~dp~~~~~~l~~~i~ 186 (264)
T 1yx1_A 110 EQPDLAALGRRLARHGL---QLLVENDQTPQGGRIEVLERFFRLAERQQLDLAMTFDIGNWRWQEQAADEAALRLGRYVG 186 (264)
T ss_dssp SSCCHHHHHHHHTTSSC---EEEEECCSSHHHHCHHHHHHHHHHHHHTTCSEEEEEETTGGGGGTCCHHHHHHHHGGGEE
T ss_pred CHHHHHHHHHHHHHCCC---EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHCCCCHHHHHHHHCCCEE
T ss_conf 01139999999997398---899965898466878899999998652698540046738888418888999997268479
No 314
>2hxt_A L-fuconate dehydratase; enolase superfamily, D- erythromohydroxamate, unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Probab=25.79 E-value=17 Score=11.56 Aligned_cols=16 Identities=6% Similarity=-0.045 Sum_probs=10.1
Q ss_pred HHCCCHHHHHHHHHHH
Q ss_conf 9779967998999999
Q gi|254780468|r 762 EELCMIKAINLFMLER 777 (963)
Q Consensus 762 e~~gl~~~ld~~vl~~ 777 (963)
++-||-.++|.-.+++
T Consensus 406 ~~PGLGveid~~~l~~ 421 (441)
T 2hxt_A 406 EVPGFSAEMHPASIAE 421 (441)
T ss_dssp CSSBCSCCBCHHHHHH
T ss_pred CCCCCCEEECHHHHHH
T ss_conf 9899774579999954
No 315
>1iwp_B Glycerol dehydratase beta subunit; cobalamin, radical catalysis, lyase; HET: B12; 2.10A {Klebsiella pneumoniae} SCOP: c.51.3.1 PDB: 1mmf_B*
Probab=25.49 E-value=17 Score=11.52 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=9.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 775324066999999999
Q gi|254780468|r 535 QDNLTGIPNRQSFLDRLT 552 (963)
Q Consensus 535 ~D~lTGL~NR~~f~~~l~ 552 (963)
+-.++|++--..+.+-+.
T Consensus 43 ~~t~~g~~~~~vLrevla 60 (194)
T 1iwp_B 43 HHTLIDMPHGAILKELIA 60 (194)
T ss_dssp CBCTTCCBHHHHHHHHHH
T ss_pred HHEECCCCHHHHHHHHHH
T ss_conf 201328778999999970
No 316
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=25.42 E-value=17 Score=11.51 Aligned_cols=14 Identities=21% Similarity=0.038 Sum_probs=5.2
Q ss_pred HHHHHHHHHCCCCE
Q ss_conf 99999987089740
Q gi|254780468|r 679 LAMYHAKHRGGNHV 692 (963)
Q Consensus 679 ~Al~~Ak~~g~~~~ 692 (963)
..|..-|..|-|.+
T Consensus 57 ~~l~~m~~~G~N~V 70 (343)
T 3civ_A 57 ASMRALAEQPFNWV 70 (343)
T ss_dssp HHHHHHHHSSCSEE
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999998599889
No 317
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A* 1ll6_A
Probab=25.20 E-value=17 Score=11.48 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=15.4
Q ss_pred HCCHHHHHHHHHHHHHCCCE-EEE-----ECCCC
Q ss_conf 50999899999999988989-999-----18877
Q gi|254780468|r 838 MGNPERSRLLLGRLRKIGIS-LTL-----DDFGT 865 (963)
Q Consensus 838 ~~~~~~~~~~~~~l~~~G~~-ial-----DdFG~ 865 (963)
.+|.+.++.-++..++.|.. +++ ||+|.
T Consensus 319 ydd~~Si~~K~~~~k~~gLgGv~iW~l~~Dd~~~ 352 (392)
T 1ll7_A 319 YDTVKIAGKKAEYITKNGMGGGMWWESSSDKTGN 352 (392)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEECTTSCCCGG
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 4999999999999996799889998567789989
No 318
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=25.17 E-value=17 Score=11.48 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHH------CCCEEEEEC
Q ss_conf 99989999999998------898999918
Q gi|254780468|r 840 NPERSRLLLGRLRK------IGISLTLDD 862 (963)
Q Consensus 840 ~~~~~~~~~~~l~~------~G~~ialDd 862 (963)
.+++....+..|-. -|-.+.+|.
T Consensus 208 ~pedia~~v~fL~S~~s~~iTG~~i~vDG 236 (245)
T 1uls_A 208 KPLEVAYAALFLLSDESSFITGQVLFVDG 236 (245)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CHHHHHHHHHHHHCCHHCCCCCCEEEECC
T ss_conf 99999999999956122697687599899
No 319
>3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.95 E-value=17 Score=11.45 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=70.6
Q ss_pred HCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC-CCCEEEE
Q ss_conf 439148999999998819995469999713377509998999999999889899991887764548889727-9989997
Q gi|254780468|r 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI-PFDTVKF 883 (963)
Q Consensus 805 l~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l-~~d~iKi 883 (963)
+.-..+-..+.+.|.+.+.. ..+++|..+ ..++.+++.|...-.-| .++...|.+. ..+..+.
T Consensus 45 ~G~GrvG~~ia~~L~~~~~~-~~vviD~d~-----------~~v~~l~~~g~~~v~gD----~~d~~~L~~a~~~~~a~~ 108 (183)
T 3c85_A 45 LGMGRIGTGAYDELRARYGK-ISLGIEIRE-----------EAAQQHRSEGRNVISGD----ATDPDFWERILDTGHVKL 108 (183)
T ss_dssp ECCSHHHHHHHHHHHHHHCS-CEEEEESCH-----------HHHHHHHHTTCCEEECC----TTCHHHHHTBCSCCCCCE
T ss_pred ECCCHHHHHHHHHHHHHCCC-EEEEEECCH-----------HHHHHHHCCCCEEEECC----CCCHHHHHHHCCCCCCCE
T ss_conf 89888999999999984898-699993881-----------88788630461389868----999999997149676749
Q ss_pred EHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 16885399945799999999999977980-99970399899998998099899-40520689998999999985161
Q gi|254780468|r 884 NGSLMTGSTEKRIAILRSIIPMAKNIETT-IIAKDIYGEIDIKELTRMGCDYI-QDSHVASPLGFNSILKLLKERFP 958 (963)
Q Consensus 884 D~sfv~~~~~~~~~~v~sii~~a~~lgi~-viAegVE~~~~~~~l~~~G~d~~-QG~~~~~P~~~~~~~~~l~~~~~ 958 (963)
++-..+.... -..++..+++++.+ .|.--+++.+....|+++|+|.+ .-+.-+-..=...+.+.|+.+|.
T Consensus 109 ---vi~~~~~~~~--n~~~~~~~r~~~~~~~Iiara~~~~~~~~L~~~Gad~Vv~p~~~~g~~la~~~l~~l~~e~~ 180 (183)
T 3c85_A 109 ---VLLAMPHHQG--NQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHVCKQLEPQFT 180 (183)
T ss_dssp ---EEECCSSHHH--HHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHCCCCC
T ss_pred ---EEECCCCHHH--HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCCCE
T ss_conf ---9981684079--99999999987899479999779999999998699999985999999999999986075030
No 320
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=24.61 E-value=17 Score=11.40 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCEEE--EEECCCHHHHHHHHHCCCCEEEC
Q ss_conf 99999999997798099--97039989999899809989940
Q gi|254780468|r 898 ILRSIIPMAKNIETTII--AKDIYGEIDIKELTRMGCDYIQD 937 (963)
Q Consensus 898 ~v~sii~~a~~lgi~vi--AegVE~~~~~~~l~~~G~d~~QG 937 (963)
.+..+++-|.+.|++.+ ..|.++++-.+.+++.|+..+++
T Consensus 70 ~~~~~v~e~~~~g~k~vw~q~G~~~e~~~~~a~~~Gi~vi~~ 111 (122)
T 3ff4_A 70 NQLSEYNYILSLKPKRVIFNPGTENEELEEILSENGIEPVIG 111 (122)
T ss_dssp HHGGGHHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEES
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEECC
T ss_conf 989999999853999999936987999999999969979957
No 321
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=24.35 E-value=18 Score=11.37 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=11.0
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 98099970399899998998099899
Q gi|254780468|r 910 ETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 910 gi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
++++++.|==|.+.+....+.|++.+
T Consensus 148 ~i~~iptGGI~~~N~~~yl~aGa~~v 173 (212)
T 2v82_A 148 DIAVFAVGGVTPENLAQWIDAGCAGA 173 (212)
T ss_dssp TCEEEEESSCCTTTHHHHHHHTCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHCCCEEE
T ss_conf 87797427999899999998599699
No 322
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G- protein coupled receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=24.27 E-value=18 Score=11.36 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 7888999999999-9999999999999705128999
Q gi|254780468|r 186 NSFTLYRGIIIGV-ASLLAIFLTIFYMVNRSSMLIP 220 (963)
Q Consensus 186 ~~~~l~~G~~~G~-l~~lalynl~lf~~~r~~~y~~ 220 (963)
.....-+|+++|+ +++-++-.+++|+..+.+--|.
T Consensus 15 v~~~~~~aIv~GvriGaa~l~lii~w~isk~kkTPI 50 (80)
T 2k9p_A 15 VNSTVTQAILFGVRSGAAALTLIVVWITSRSRKTPI 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCH
T ss_pred HHHHHHEEHEEHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 972423001001268899999999999963677988
No 323
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A
Probab=24.23 E-value=12 Score=12.72 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=33.3
Q ss_pred CCEEEEEHHHHCCCCHH-HHHHHHHHHHHHHHCCCEEEEEECCCH---------HHHH--HHHHCCCCEEECC
Q ss_conf 98999716885399945-799999999999977980999703998---------9999--8998099899405
Q gi|254780468|r 878 FDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGE---------IDIK--ELTRMGCDYIQDS 938 (963)
Q Consensus 878 ~d~iKiD~sfv~~~~~~-~~~~v~sii~~a~~lgi~viAegVE~~---------~~~~--~l~~~G~d~~QG~ 938 (963)
.+.+-.+..++...... .......++..||..|++|.+=.|.++ ++.- .+.++|||.+--.
T Consensus 274 a~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~V~~WTvn~~~~~~~~~d~~~~~~~~~~~~GVDGIiTD 346 (356)
T 1ydy_A 274 ADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTD 346 (356)
T ss_dssp CSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTSCCTTCSSHHHHHHHHHTTSCCSEEEES
T ss_pred CCEECCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 5685345642142335654446899999999879999997367756655226999999999986498299986
No 324
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii OT3}
Probab=23.61 E-value=18 Score=11.26 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHH-HHHHHHHHHHHHH
Q ss_conf 999999998898999918877645488897279989997168853999457-9999999999997
Q gi|254780468|r 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKN 908 (963)
Q Consensus 845 ~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~-~~~v~sii~~a~~ 908 (963)
..+.+.|++.|+.++- |+.. +.-..+.|. +....+.++ ..+++++-+..+.
T Consensus 327 ~~~~~~L~~~gi~i~~-----G~~~------~~~~~iRis--~~~~~t~edid~lv~aL~~~l~~ 378 (386)
T 2dr1_A 327 DEVYEAMRKRGFELAK-----GYGS------VKEKTFRIG--HMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp HHHHHHHHHTTEECEE-----CCGG------GTTTEEEEE--CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEC-----CCHH------HCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999978939970-----7752------379989997--96749999999999999999999
No 325
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=23.57 E-value=18 Score=11.26 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=64.6
Q ss_pred CEEEEEECCHHHHCCCH-HHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 84999976977943914-89999999988199954699997133775099989999999998898999918877645488
Q gi|254780468|r 793 PIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 (963)
Q Consensus 793 ~~~vsINlS~~~l~~~~-f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~ 871 (963)
.+-+-+|++..--.+.+ +.+.+..+.+..+-..-++++ |+..+. .++..+.++...+.|
T Consensus 86 EID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIl---Et~~L~-~~ei~~a~~~~~~aG---------------- 145 (225)
T 1mzh_A 86 ELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIV---ETPYLN-EEEIKKAVEICIEAG---------------- 145 (225)
T ss_dssp EEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEEC---CGGGCC-HHHHHHHHHHHHHHT----------------
T ss_pred EEEEEECHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHH---HHCCCC-HHHHHHHHHHHHHCC----------------
T ss_conf 899862378871576799999999999865886152123---322278-899999999999839----------------
Q ss_pred HHHHCCCCEEEEEHHHHC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 897279989997168853-9994579999999999997798099970399899998998099899
Q gi|254780468|r 872 YLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 872 ~L~~l~~d~iKiD~sfv~-~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
+|+||-.-.|.. +.+.++-.+++..+. ...|+| .+=||-|.+++..+.++|++.+
T Consensus 146 ------adfIKTSTG~~~~gat~e~v~~m~~~~~--~~~gIK-asGGIrt~~~a~~~i~aGa~Ri 201 (225)
T 1mzh_A 146 ------ADFIKTSTGFAPRGTTLEEVRLIKSSAK--GRIKVK-ASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp ------CSEEECCCSCSSSCCCHHHHHHHHHHHT--TSSEEE-EESSCCSHHHHHHHHHTTCSEE
T ss_pred ------CCEEEECCCCCCCCCCHHHHHHHHHHHC--CCCEEE-CCCCCCCHHHHHHHHHHCCHHE
T ss_conf ------9859836887888999999999999868--874597-9589799999999998563426
No 326
>3bsm_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9262H, clone 9262H1BCT8P1; 2.20A {Chromohalobacter salexigens dsm 3043}
Probab=23.27 E-value=18 Score=11.22 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=24.8
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8898999918877645488897279-9899971688539994579999999999997798099
Q gi|254780468|r 853 KIGISLTLDDFGTKCSLLSYLGYIP-FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII 914 (963)
Q Consensus 853 ~~G~~ialDdFG~g~ssl~~L~~l~-~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi 914 (963)
..++.|+.|.--.+...+..+.+.. +|++.+|-..+.++.+ .+.+.++|+..|+++.
T Consensus 256 ~~~ipIa~gE~~~~~~~~~~li~~~a~dii~~d~~~~GGit~-----~~~ia~lA~~~gi~v~ 313 (413)
T 3bsm_A 256 HTTTPLAIGEVFNSIHDCRELIQNQWIDYIRMPLTHGGGITA-----MRRVADLASLYHVRTG 313 (413)
T ss_dssp HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHH-----HHHHHHHHHTTTCEEC
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHH-----HHHHHHHHHHCCCEEE
T ss_conf 517881057565542889999875358877357534687999-----9999999998699487
No 327
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=23.20 E-value=18 Score=11.21 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=63.2
Q ss_pred EEEEEECCHHHHCCCHH---HHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 49999769779439148---999999998819995469999713377509998999999999889899991887764548
Q gi|254780468|r 794 IFILINIASKDLLDNEL---CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 (963)
Q Consensus 794 ~~vsINlS~~~l~~~~f---~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl 870 (963)
+-+-+|++. +.+.++ .+.+..+....+-.+-++ |-|+..+.+ ++....++.....|
T Consensus 143 IDmVin~~~--lk~g~~~~v~~eI~~v~~~a~~~~lKV---ILEt~~Lt~-eei~~a~~ia~~aG--------------- 201 (288)
T 3oa3_A 143 LDMVMNYPW--LSEKRYTDVFQDIRAVRLAAKDAILKV---ILETSQLTA-DEIIAGCVLSSLAG--------------- 201 (288)
T ss_dssp EEEECCHHH--HHTTCHHHHHHHHHHHHHHTTTSEEEE---ECCGGGCCH-HHHHHHHHHHHHTT---------------
T ss_pred EEEEECHHH--HHCCCHHHHHHHHHHHHHHCCCCEEEE---EEECCCCCH-HHHHHHHHHHHHCC---------------
T ss_conf 998655788--705769999999999998548973899---983376998-99999999999769---------------
Q ss_pred HHHHHCCCCEEEEEHHHHC-CCCHHHHHHHHHHHHH-HHHCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 8897279989997168853-9994579999999999-997798099970399899998998099899
Q gi|254780468|r 871 SYLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPM-AKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 871 ~~L~~l~~d~iKiD~sfv~-~~~~~~~~~v~sii~~-a~~lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
.|+||-.-.|.. +.+.++-.+++.++.. ....|+| .+=||-|.+++..+.++|++.+
T Consensus 202 -------ADFIKTSTGf~~~gAt~edV~lm~~~~~~~~~~~~IK-aSGGIRt~~~a~~~i~aGa~RI 260 (288)
T 3oa3_A 202 -------ADYVKTSTGFNGPGASIENVSLMSAVCDSLQSETRVK-ASGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp -------CSEEECCCSSSSCCCCHHHHHHHHHHHHHSSSCCEEE-EESSCCSHHHHHHHHHTTCSEE
T ss_pred -------CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-CCCCCCCHHHHHHHHHHHHHHH
T ss_conf -------9879825886899988999999999999848782586-7159899999999999865760
No 328
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.91 E-value=19 Score=11.16 Aligned_cols=122 Identities=11% Similarity=-0.008 Sum_probs=78.7
Q ss_pred HHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHH
Q ss_conf 46999971337750999899999999988989999188776-45488897279989997168853999457999999999
Q gi|254780468|r 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK-CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIP 904 (963)
Q Consensus 826 ~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g-~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~ 904 (963)
.++.+-..+... |.-...-+...++..|+++--=.-.+. ..=.....+.++|.|=|.-+...+ ...++.+++
T Consensus 4 ~kVvi~~~~~D~--H~lG~~~va~~l~~~G~~V~~LG~~~p~e~iv~~~~~~~~d~V~iS~~~~~~-----~~~~~~~i~ 76 (137)
T 1ccw_A 4 KTIVLGVIGSDC--HAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQG-----EIDCKGLRQ 76 (137)
T ss_dssp CEEEEEEETTCC--CCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTH-----HHHHTTHHH
T ss_pred CEEEEEECCCCH--HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCC-----HHHHHHHHH
T ss_conf 879999469874--5899999999999879879977866699999999998399878876113445-----577999999
Q ss_pred HHHHCC---CEEEEEECC------CHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999779---809997039------989999899809989940520689998999999985161
Q gi|254780468|r 905 MAKNIE---TTIIAKDIY------GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 (963)
Q Consensus 905 ~a~~lg---i~viAegVE------~~~~~~~l~~~G~d~~QG~~~~~P~~~~~~~~~l~~~~~ 958 (963)
..++.| +++++=|.= .++....++++|+|-+ |++..|.+++..++++.+-
T Consensus 77 ~L~~~~~~~v~iivGG~~~~~~~~~~~~~~~l~~~G~~~v----f~~gt~~~~~~~~i~~~l~ 135 (137)
T 1ccw_A 77 KCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRV----YAPGTPPEVGIADLKKDLN 135 (137)
T ss_dssp HHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEE----CCTTCCHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEE----ECCCCCHHHHHHHHHHHHC
T ss_conf 9997499999799978878874441889999997598889----7998899999999999867
No 329
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor}
Probab=22.84 E-value=19 Score=11.15 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=4.4
Q ss_pred EEEEEECCCEEEE
Q ss_conf 5999955622311
Q gi|254780468|r 102 ERLIVVPHYRLVG 114 (963)
Q Consensus 102 ~~~L~~~~p~Ld~ 114 (963)
+-++.+.+.-+..
T Consensus 72 eVLVkV~a~gIc~ 84 (456)
T 3krt_A 72 EALVAVMASSVNY 84 (456)
T ss_dssp EEEEEEEEEEECH
T ss_pred EEEEEEEEEEECH
T ss_conf 8999999998375
No 330
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=22.63 E-value=19 Score=11.13 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=24.4
Q ss_pred HHCCCEEEEEECCCHHHHHHHHHCCCCEE-ECCCC
Q ss_conf 97798099970399899998998099899-40520
Q gi|254780468|r 907 KNIETTIIAKDIYGEIDIKELTRMGCDYI-QDSHV 940 (963)
Q Consensus 907 ~~lgi~viAegVE~~~~~~~l~~~G~d~~-QG~~~ 940 (963)
+.-++++.|.|==|.+......+.|+|++ -|.+.
T Consensus 226 ~~~~v~ieaSGGI~~~~i~~ya~~GVD~isvg~lt 260 (273)
T 2b7n_A 226 HYPFVLLEASGNISLESINAYAKSGVDAISVGALI 260 (273)
T ss_dssp HCTTCEEEEESSCCTTTHHHHHTTTCSEEECTHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHH
T ss_conf 69966999979999999999997699999858654
No 331
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.3
Probab=22.47 E-value=19 Score=11.10 Aligned_cols=18 Identities=22% Similarity=0.041 Sum_probs=8.2
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999999889899991
Q gi|254780468|r 844 SRLLLGRLRKIGISLTLD 861 (963)
Q Consensus 844 ~~~~~~~l~~~G~~ialD 861 (963)
+..+++.|++.|.++++-
T Consensus 87 ~~~~L~~L~~~g~~~~v~ 104 (190)
T 2fi1_A 87 VSDLLEDISNQGGRHFLV 104 (190)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCEEEEEE
T ss_conf 999999987458138995
No 332
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A {Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Probab=22.43 E-value=19 Score=11.10 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=6.6
Q ss_pred CEEEEEEEEECCCC
Q ss_conf 73899999986999
Q gi|254780468|r 477 GRLQYEFRVRAADN 490 (963)
Q Consensus 477 ~~~~~e~r~r~~dG 490 (963)
.++..-|-....||
T Consensus 39 THi~yaF~~i~~~g 52 (419)
T 1itx_A 39 THINYAFADICWNG 52 (419)
T ss_dssp SEEEEEEEEECBTT
T ss_pred CEEEEEEEEECCCC
T ss_conf 85999107504676
No 333
>3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=22.38 E-value=19 Score=11.09 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHCCCCEE
Q ss_conf 888972799899971688539994579999999999997798099970-399899998998099899
Q gi|254780468|r 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD-IYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 870 l~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAeg-VE~~~~~~~l~~~G~d~~ 935 (963)
+..+....||.|-|=+..+ -+-+-.+++..++.+||-| |+++|+....-+.|...+
T Consensus 120 ~~~i~~~~PD~VEiLPG~~----------p~~I~~i~~~~~~PiIAGGLI~~kedV~~aL~aGA~aV 176 (192)
T 3kts_A 120 VALIQKVQPDCIELLPGII----------PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAV 176 (192)
T ss_dssp HHHHHHHCCSEEEEECTTC----------HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEE
T ss_pred HHHHHHCCCCEEEECCHHH----------HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEE
T ss_conf 9998547989999886678----------99999999746999997667288999999998599799
No 334
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=22.36 E-value=19 Score=11.09 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=8.9
Q ss_pred ECCCHHHHHHHHHCCCCEE
Q ss_conf 0399899998998099899
Q gi|254780468|r 917 DIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 917 gVE~~~~~~~l~~~G~d~~ 935 (963)
||-+..++...-++|||.+
T Consensus 186 GIG~pSdAa~aMElG~DaV 204 (268)
T 2htm_A 186 GLGLPSHAAEVMELGLDAV 204 (268)
T ss_dssp CCCSHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHCCCCEE
T ss_conf 8899899999997479899
No 335
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=22.33 E-value=19 Score=11.08 Aligned_cols=69 Identities=9% Similarity=0.153 Sum_probs=34.6
Q ss_pred CCCEEEEEEEECCCCCCEEEEEEECCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEE
Q ss_conf 87357999985598883359999556223114899985698368863387677323555566744778738998599999
Q gi|254780468|r 84 HRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIM 163 (963)
Q Consensus 84 ~s~~W~~~~l~N~s~~~~~~~L~~~~p~Ld~i~~y~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~f~l~l~p~~~~t~~~ 163 (963)
....|++|.+..... +. +.+..+.-.+.+++..+.++.......+. . ........+.+.|| ++|+
T Consensus 38 ~d~D~y~f~~~~~~~--v~--i~l~~~~~~d~~~~ly~~~~~~~~~~~~~------~--~~~~~~~~~~~~~G---tYYi 102 (119)
T 1nqj_A 38 DSRDYYSFEVKEEGE--VN--IELDKKDEFGVTWTLHPESNINDRITYGQ------V--DGNKVSNKVKLRPG---KYYL 102 (119)
T ss_dssp CCEEEEEEEESSCEE--EE--EEEEESSSSEEEEEEEECC----CCEECE------E--ETTEEEEEEEECSE---EEEE
T ss_pred CCCEEEEEEECCCCE--EE--EEEECCCCCCCEEEEEECCCCEEEEEECC------C--CCCEEEEEEECCCC---EEEE
T ss_conf 984799999279978--99--99976888971499994799855887335------7--99526778855898---8999
Q ss_pred EECC
Q ss_conf 9738
Q gi|254780468|r 164 EIST 167 (963)
Q Consensus 164 r~~s 167 (963)
++.+
T Consensus 103 ~V~~ 106 (119)
T 1nqj_A 103 LVYK 106 (119)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9998
No 336
>3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=22.31 E-value=19 Score=11.08 Aligned_cols=65 Identities=6% Similarity=-0.057 Sum_probs=29.1
Q ss_pred HHHHHHHH-C-CCEEEEECCCCCH--HHHHHHHHCCCCEE----EEEHHHHCCC----CHH-HHHHHHHHHHHHHHCC
Q ss_conf 99999998-8-9899991887764--54888972799899----9716885399----945-7999999999999779
Q gi|254780468|r 846 LLLGRLRK-I-GISLTLDDFGTKC--SLLSYLGYIPFDTV----KFNGSLMTGS----TEK-RIAILRSIIPMAKNIE 910 (963)
Q Consensus 846 ~~~~~l~~-~-G~~ialDdFG~g~--ssl~~L~~l~~d~i----KiD~sfv~~~----~~~-~~~~v~sii~~a~~lg 910 (963)
..+..|++ . ++.++..|=-.|. +..-.-..+...+| .+|++.-.+. +++ -..++..+......+|
T Consensus 183 ~~I~~Lk~~~~~~~vGySDHt~g~~~~~~~~Av~~GA~iIEKHfTldk~~~g~d~~S~~~~e~~~~v~~i~~~~~~lg 260 (350)
T 3g8r_A 183 ARIKTLRQQYAGVRIGYSTHEDPDLMEPIMLAVAQGATVFEKHVGLPTDQYGINNYSANPEQVRRWLAAAARALAMLG 260 (350)
T ss_dssp THHHHHHHHCTTSEEEEEECCCSSCCHHHHHHHHTTCCEEEEEBCCCBTTBCCCTTCBCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 235447875367857878887775421268788589741206784476678972320272789999999999999957
No 337
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=21.99 E-value=19 Score=11.03 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998755
Q gi|254780468|r 550 RLTTILDLSA 559 (963)
Q Consensus 550 ~l~~~l~~~~ 559 (963)
+++..++.+.
T Consensus 73 ~l~~~v~~a~ 82 (305)
T 1h1n_A 73 DLIATVNAIT 82 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 338
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=21.91 E-value=20 Score=11.02 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=26.1
Q ss_pred EEEEEEEEEEECCC-CCCCHHH---------HHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 99999987764589-8899899---------999999999999870897405201111
Q gi|254780468|r 652 ITVTASIGFASWTS-SKITSSE---------MLKNAELAMYHAKHRGGNHVESFRVSS 699 (963)
Q Consensus 652 i~~t~siGi~~~~~-~~~~~~~---------ll~~Ad~Al~~Ak~~g~~~~~~~~~~~ 699 (963)
..+|..+|...+.+ ..++.++ +=+.+-.++..||..|+.-+.+.....
T Consensus 207 ~~vTLHVG~GTF~Pv~~e~i~~H~mH~E~~~I~~~ta~~I~~ak~~g~RIiAVGTT~~ 264 (347)
T 1vky_A 207 AEVVLHVGIGTFRPVKVEEVEKHKMHEEFYQVPKETVRKLRETRERGNRIVAVGTTTV 264 (347)
T ss_dssp EEEEEEC------------------CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHH
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 7789986467546764443455788655899379999999999971894899954189
No 339
>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} SCOP: f.4.3.3 PDB: 1kmp_A* 1po0_A* 1pnz_A* 1po3_A* 2d1u_A 1zzv_A
Probab=21.82 E-value=16 Score=11.80 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 42368899999999999886432102
Q gi|254780468|r 6 SLRSHFEKAFLILVLFLLWMVSPSFA 31 (963)
Q Consensus 6 ~~r~~~~~~~~~~~l~~~~~~~~a~A 31 (963)
|||...+...+++.+.+++++..+.|
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 28 (774)
T 1kmo_A 3 PLRVFRKTTPLVNTIRLSLLPLAGLS 28 (774)
T ss_dssp --------------------------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 63000120689999999999875420
No 340
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=21.79 E-value=20 Score=11.00 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHCCCEEEE-ECC
Q ss_conf 899999999988989999-188
Q gi|254780468|r 843 RSRLLLGRLRKIGISLTL-DDF 863 (963)
Q Consensus 843 ~~~~~~~~l~~~G~~ial-DdF 863 (963)
....+++.+++.|+.... |+|
T Consensus 290 ~~~~~~~~a~~~Gig~~~WDn~ 311 (515)
T 3icg_A 290 HAEYYAKSAKARGLTPIWWDNG 311 (515)
T ss_dssp HHHHHHHHHHTTTCEEEECCCS
T ss_pred HHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999999999879859998899
No 341
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=21.75 E-value=20 Score=11.00 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=5.8
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999999988989999
Q gi|254780468|r 846 LLLGRLRKIGISLTL 860 (963)
Q Consensus 846 ~~~~~l~~~G~~ial 860 (963)
.+++.|++.|+++++
T Consensus 121 ~~L~~L~~~g~~~~i 135 (243)
T 2hsz_A 121 ETLEALKAQGYILAV 135 (243)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999966996687
No 342
>3lr0_A Sensor protein; niaid, seattle structural genomics center for infectious DIS ssgcid, PH, RISS, iodide phased, burkholder melioidosis; 1.90A {Burkholderia pseudomallei} PDB: 3lr3_A 3lr5_A 3lr4_A
Probab=21.71 E-value=20 Score=10.99 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=5.5
Q ss_pred EEECCCEEECCC
Q ss_conf 980641020255
Q gi|254780468|r 611 RLSGNRFGIILI 622 (963)
Q Consensus 611 R~~gdeFaill~ 622 (963)
.+++|+|-++++
T Consensus 123 ~Id~D~yWl~l~ 134 (143)
T 3lr0_A 123 KIDDDDYWVALD 134 (143)
T ss_dssp EETTEEEEEEC-
T ss_pred EECCCCEEEECC
T ss_conf 978977589759
No 343
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=21.54 E-value=20 Score=10.96 Aligned_cols=27 Identities=19% Similarity=-0.029 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHH
Q ss_conf 99999999999977980999703998999
Q gi|254780468|r 896 IAILRSIIPMAKNIETTIIAKDIYGEIDI 924 (963)
Q Consensus 896 ~~~v~sii~~a~~lgi~viAegVE~~~~~ 924 (963)
...++.++..|+++|++|. +-|..++.
T Consensus 193 ~aavK~VlGTArSMGI~Vd--pkev~ke~ 219 (224)
T 3bbo_K 193 ESAMRIIAGTAANMGIDID--PPILVKKK 219 (224)
T ss_dssp HHHHHHHHHHHTTTTEEEC----------
T ss_pred HHHHHHHHHHHEECEEEEE--CCCCHHHH
T ss_conf 9999996822625868997--86407766
No 344
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=21.46 E-value=20 Score=10.95 Aligned_cols=108 Identities=10% Similarity=0.114 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 39148999999998819995469999713377509998999999999-88989999188776454888972799899971
Q gi|254780468|r 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR-KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 (963)
Q Consensus 806 ~~~~f~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~~~l~-~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD 884 (963)
.-..+-..+.+.|.+.+.+ -+++|- |++.+. +++ +.|+.+-..| .++...|.+.+++..+.
T Consensus 11 G~G~~G~~la~~L~~~g~~--v~vId~-------d~~~~~----~~~~~~~~~vi~gd----~~~~~~L~~a~i~~a~~- 72 (140)
T 1lss_A 11 GIGRVGYTLAKSLSEKGHD--IVLIDI-------DKDICK----KASAEIDALVINGD----CTKIKTLEDAGIEDADM- 72 (140)
T ss_dssp CCSHHHHHHHHHHHHTTCE--EEEEES-------CHHHHH----HHHHHCSSEEEESC----TTSHHHHHHTTTTTCSE-
T ss_pred CCCHHHHHHHHHHHHCCCC--EEEEEE-------CHHHHH----HHHHCCCCEEEECC----CCHHHHHHHCCCCCCCE-
T ss_conf 9899999999999977995--899850-------156655----44531474599887----61577787459130388-
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 688539994579999999999997798099970399899998998099899
Q gi|254780468|r 885 GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 (963)
Q Consensus 885 ~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~ 935 (963)
++--.+++...+ .+..+|+.++.+-+.--+.+.+..+.+.++|+|++
T Consensus 73 --vi~~t~~d~~Ni--~~~~~ak~~~~~~iia~~~~~~~~~~l~~~g~d~v 119 (140)
T 1lss_A 73 --YIAVTGKEEVNL--MSSLLAKSYGINKTIARISEIEYKDVFERLGVDVV 119 (140)
T ss_dssp --EEECCSCHHHHH--HHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEE
T ss_pred --EEEEECCHHHHH--HHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEE
T ss_conf --999508677789--99999998299948999858888989986799999
No 345
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), structural genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=21.45 E-value=20 Score=10.95 Aligned_cols=61 Identities=5% Similarity=-0.076 Sum_probs=36.7
Q ss_pred HHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEECC
Q ss_conf 88972799899971688539994579999999999997798099970399899998998099899405
Q gi|254780468|r 871 SYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 (963)
Q Consensus 871 ~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAegVE~~~~~~~l~~~G~d~~QG~ 938 (963)
..+....+..+-++-..... .....++.-+|..|++|.+=.|.+++....+ ++|||.+--.
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~------~~~~~~v~~~~~~G~~v~~wTVN~~e~~~~~-~~GVdgIiTD 225 (234)
T 1o1z_A 165 ERVEKERPYSLHVPYQAFEL------EYAVEVLRSFRKKGIVIFVWTLNDPEIYRKI-RREIDGVITD 225 (234)
T ss_dssp HHHHHHCCSEEEEEGGGGGS------HHHHHHHHHHHHTTCEEEEESCCCHHHHHHH-GGGCSEEEES
T ss_pred HHHHHHCCCCCCCCHHHHHH------HHHHHHHHHHHHCCCEEEEECCCHHHHHHHH-HCCCCEEEEC
T ss_conf 87654212123676123005------6579999999987998999889869999999-7599999977
No 346
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*
Probab=21.22 E-value=20 Score=10.92 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=48.5
Q ss_pred HHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 7750999899999999988989999188776454888-972799899971688539994579999999999997798099
Q gi|254780468|r 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY-LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII 914 (963)
Q Consensus 836 ~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~-L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~vi 914 (963)
+..+|.+...++ -+..++.++.|.--.+...+.. +..-.+|++.+|.+.+.++.+ ...++++|+..|++++
T Consensus 217 ~~~~~~~~~~~l---~~~~~ipia~dE~~~~~~~~~~~~~~~~~d~~~~~~~~~GGi~~-----~~~i~~~a~~~gi~~~ 288 (368)
T 1sjd_A 217 LEEEDVLGHAEL---ARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLE-----ARRVHDVCAAHGIPVW 288 (368)
T ss_dssp SCTTCHHHHHHH---HTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHH-----HHHHHHHHHHTTCCEE
T ss_pred CCCCCHHHHHHH---HHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHH-----HHHHHHHHHHCCCEEE
T ss_conf 486788999988---76169986688414443658999971998879964577787499-----9999999998799598
Q ss_pred EEE-CCCHHHH
Q ss_conf 970-3998999
Q gi|254780468|r 915 AKD-IYGEIDI 924 (963)
Q Consensus 915 Aeg-VE~~~~~ 924 (963)
.-+ +|+.-..
T Consensus 289 ~~~~~~~~i~~ 299 (368)
T 1sjd_A 289 CGGMIETGLGR 299 (368)
T ss_dssp ECCCCCCHHHH
T ss_pred ECCCCCCHHHH
T ss_conf 78975329999
No 347
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=21.20 E-value=20 Score=10.91 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHCCCCEEECC
Q ss_conf 99999999870897405201
Q gi|254780468|r 677 AELAMYHAKHRGGNHVESFR 696 (963)
Q Consensus 677 Ad~Al~~Ak~~g~~~~~~~~ 696 (963)
+-.++.+||..|+..+.+..
T Consensus 239 t~~~I~~ak~~g~rIiAVGT 258 (345)
T 1wdi_A 239 VAEAVNRAKAEGRRVVAVGT 258 (345)
T ss_dssp HHHHHHHHHHTTCCEEEESH
T ss_pred HHHHHHHHHHCCCCEEEEEC
T ss_conf 99999999974992999924
No 348
>1eex_B Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.51.3.1 PDB: 1dio_B* 1egm_B* 1egv_B* 1iwb_B* 1uc4_B* 1uc5_B*
Probab=21.16 E-value=20 Score=10.91 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=10.8
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 67753240669999999999
Q gi|254780468|r 534 FQDNLTGIPNRQSFLDRLTT 553 (963)
Q Consensus 534 ~~D~lTGL~NR~~f~~~l~~ 553 (963)
.+-.++|++--..+.+-+.-
T Consensus 75 ~~~t~~g~~~~~vLreVlaG 94 (224)
T 1eex_B 75 QTVNIVGIPHKSILREVIAG 94 (224)
T ss_dssp BCBCTTCCBHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHH
T ss_conf 12111187889999999877
No 349
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 1loq_A* 1lor_A* 1kly_A* 3lhz_A* 3m44_A 3lhw_A* ...
Probab=20.93 E-value=20 Score=10.87 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=14.3
Q ss_pred CCEEEEEHHHHCCCCHHH--HHHHHHH
Q ss_conf 989997168853999457--9999999
Q gi|254780468|r 878 FDTVKFNGSLMTGSTEKR--IAILRSI 902 (963)
Q Consensus 878 ~d~iKiD~sfv~~~~~~~--~~~v~si 902 (963)
.|++-+-|..++..+|.. +.+.+++
T Consensus 196 ad~iIvGR~I~~a~dP~~~a~~~~~~i 222 (228)
T 3m47_A 196 ADAIIVGRSIYLADNPAAAAAGAIESI 222 (228)
T ss_dssp CSEEEECHHHHTSSCHHHHHHHHHHHC
T ss_pred CCEEEECCHHCCCCCCCHHHHHHHHHH
T ss_conf 999998900203999651799999999
No 350
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5
Probab=20.87 E-value=20 Score=10.86 Aligned_cols=11 Identities=9% Similarity=-0.043 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999874364
Q gi|254780468|r 706 MIKEDLCLAVE 716 (963)
Q Consensus 706 ~~~~~l~~al~ 716 (963)
.+.++++.++.
T Consensus 154 ~Li~elr~~~p 164 (289)
T 2ebn_A 154 RLAYETKQAMP 164 (289)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHCC
T ss_conf 99999998789
No 351
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.87 E-value=20 Score=10.86 Aligned_cols=109 Identities=10% Similarity=0.063 Sum_probs=73.2
Q ss_pred CHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHH
Q ss_conf 95469999713377509998999999999889899991887764548889727998999716885399945799999999
Q gi|254780468|r 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903 (963)
Q Consensus 824 ~~~~l~lEitE~~~~~~~~~~~~~~~~l~~~G~~ialDdFG~g~ssl~~L~~l~~d~iKiD~sfv~~~~~~~~~~v~sii 903 (963)
.|+-+++-+.......|.+...+.+.+.-.. + ..-++..|=||-+=+..+|......+..++
T Consensus 28 ~p~v~I~r~~g~L~F~na~~~~~~i~~~~~~------~------------~~~~~k~vVld~~~v~~iD~tg~~~L~~l~ 89 (143)
T 3llo_A 28 IPGIKIFQINAPIYYANSDLYSSALKRKTGV------N------------GSENIHTVILDFTQVNFMDSVGVKTLAGIV 89 (143)
T ss_dssp CTTEEEEEECSCHHHHHHHHHHHC-----------------------------CCSEEEEECTTCCCCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCEECCCHHHHHHHHHHHHH------C------------CCCCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 6999999848985771228888887666420------2------------579825999996689858879999999999
Q ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHCCC-CEE--ECCCCCCCCCHHHHHHHHH
Q ss_conf 99997798099970399899998998099-899--4052068999899999998
Q gi|254780468|r 904 PMAKNIETTIIAKDIYGEIDIKELTRMGC-DYI--QDSHVASPLGFNSILKLLK 954 (963)
Q Consensus 904 ~~a~~lgi~viAegVE~~~~~~~l~~~G~-d~~--QG~~~~~P~~~~~~~~~l~ 954 (963)
+-+++.|+++.-.|+. .+-.+.|...|. +.. +..+|. +.++.+...+
T Consensus 90 ~~l~~~gi~l~la~~~-~~v~~~l~~~g~~~~~~~~~~~F~---sv~dAV~~a~ 139 (143)
T 3llo_A 90 KEYGDVGIYVYLAGCS-AQVVNDLTSNRFFENPALKELLFH---SIHDAVLGSQ 139 (143)
T ss_dssp HHHHTTTCEEEEESCC-HHHHHHHHHTTTTSSGGGGGGEES---SHHHHHHHTS
T ss_pred HHHHHCCCEEEEEECC-HHHHHHHHHCCCHHHCCCCCEEEC---CHHHHHHHHH
T ss_conf 9999779999998098-799999998799121476553589---9999999998
No 352
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=20.81 E-value=20 Score=10.86 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=23.3
Q ss_pred HHHHHHHHCCCEEEEECCCCCHHHHH-HHHHCCCCEEEEEHHHHCCCCHHHH--HHHHHHHHHHHH
Q ss_conf 99999998898999918877645488-8972799899971688539994579--999999999997
Q gi|254780468|r 846 LLLGRLRKIGISLTLDDFGTKCSLLS-YLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKN 908 (963)
Q Consensus 846 ~~~~~l~~~G~~ialDdFG~g~ssl~-~L~~l~~d~iKiD~sfv~~~~~~~~--~~v~sii~~a~~ 908 (963)
.+.+.|.+.|+.+. -|+.+++-. .+.+. ...|++.-.+.++.++-++ ..++.+++..++
T Consensus 354 ~v~~~L~~~gI~v~---~G~~C~~~~~~~~~~-~g~iRvS~~~~nt~~did~lv~~L~~~v~~~~d 415 (420)
T 1t3i_A 354 DVATMVDQDGIAIR---SGHHCTQPLHRLFDA-SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHHHHHHTTTEECB---CSCTTCHHHHHHTTC-CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHCCCEEE---CCCCCCCHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999966897996---674225587886068-963999798999999999999999999998635
No 353
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa PAO1}
Probab=20.79 E-value=20 Score=10.85 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5302303578889779967998999999999999
Q gi|254780468|r 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 (963)
Q Consensus 750 ~~i~p~~fi~~ae~~gl~~~ld~~vl~~a~~~l~ 783 (963)
|..+-.+++...++.|.-..+|.--+..+.+.+.
T Consensus 250 GN~~tE~lv~~l~~~g~~~~idl~~l~~~a~~~~ 283 (302)
T 2ftp_A 250 GNVASEDVLYLLNGLEIHTGVDMHALVDAGQRIC 283 (302)
T ss_dssp CBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 7820999999998559976979999999999999
No 354
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=20.67 E-value=5.2 Score=15.62 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=59.0
Q ss_pred EECCHHHHCCCHH--HHHHH-HHHHHCCCCHHHEEEEEEHHHHHCCHHHHHHHH-HHHHHCCCEEEEECCC-CCHHH---
Q ss_conf 9769779439148--99999-999881999546999971337750999899999-9999889899991887-76454---
Q gi|254780468|r 798 INIASKDLLDNEL--CEGMQ-ALISKTLYSPSRIKLSFSESVVMGNPERSRLLL-GRLRKIGISLTLDDFG-TKCSL--- 869 (963)
Q Consensus 798 INlS~~~l~~~~f--~~~l~-~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~~-~~l~~~G~~ialDdFG-~g~ss--- 869 (963)
+|+++.++.+.+- +--+. +++..+.+.... ...-.+..-....+...+.+ +.++..|..+.+.||. +.++.
T Consensus 354 v~i~~~DIvdG~~k~iL~llW~l~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~W~~~~~~~~~~~~~i~nF~~~s~~dG~a 432 (506)
T 1pxy_A 354 VNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLK-SLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLF 432 (506)
T ss_dssp CSCCHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-TTCC-----CCCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHH
T ss_conf 588842121466201699999999999998875-3123322100279999999999987418987404289888857799
Q ss_pred -HHHHHHCCCCEEEEEHHHHCCC-CH-HHHHHHHHHHHHHHHCCCEEEE
Q ss_conf -8889727998999716885399-94-5799999999999977980999
Q gi|254780468|r 870 -LSYLGYIPFDTVKFNGSLMTGS-TE-KRIAILRSIIPMAKNIETTIIA 915 (963)
Q Consensus 870 -l~~L~~l~~d~iKiD~sfv~~~-~~-~~~~~v~sii~~a~~lgi~viA 915 (963)
...+..+.|+.| |.+.+... .. +.+.=.+-.+++|+.+|+....
T Consensus 433 ~~aLi~~~~P~~i--~~~~~~~~~~~e~~~~n~~~a~~~a~~lGi~~ll 479 (506)
T 1pxy_A 433 FLNLLWAVEPRVV--NWNLVTKGETDDEKRLNATYIVSVARKLGCSVFL 479 (506)
T ss_dssp HHHHHHHHCGGGC--CTTSCCCSCSHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHCCCCC--CHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999985088865--7877377897157999999999999983997127
No 355
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=20.60 E-value=21 Score=10.82 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 89999999998898999918877
Q gi|254780468|r 843 RSRLLLGRLRKIGISLTLDDFGT 865 (963)
Q Consensus 843 ~~~~~~~~l~~~G~~ialDdFG~ 865 (963)
.....++.+++.|...+ -|.|.
T Consensus 319 ~~~~~~~~i~~~G~~p~-~d~~~ 340 (348)
T 3iix_A 319 CIPCVMKMIELLGRKPG-RDWGG 340 (348)
T ss_dssp HHHHHHHHHHHTTCEEC-SSCCC
T ss_pred CHHHHHHHHHHCCCEEC-CCCCC
T ss_conf 89999999998699778-78898
No 356
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=20.42 E-value=21 Score=10.79 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHCC-CEEEEECCCCCHHHHHHHH-HCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEE---ECCCHHH
Q ss_conf 9999889-8999918877645488897-279989997168853999457999999999999779809997---0399899
Q gi|254780468|r 849 GRLRKIG-ISLTLDDFGTKCSLLSYLG-YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAK---DIYGEID 923 (963)
Q Consensus 849 ~~l~~~G-~~ialDdFG~g~ssl~~L~-~l~~d~iKiD~sfv~~~~~~~~~~v~sii~~a~~lgi~viAe---gVE~~~~ 923 (963)
..|++.| +.+ ++..++|-..+..+. +.++|.|=+|-.+ -++ +.-.+++.+-.- .+.+++.= +-+..+.
T Consensus 31 ~~L~~~~~~~v-v~~A~~g~eAl~~l~~~~~~DliilD~~M-P~~--dG~e~~~~ir~~---~~~~i~ii~~t~~~~~~~ 103 (145)
T 3kyj_B 31 SFIKTLPDFKV-VAQAANGQEALDKLAAQPNVDLILLDIEM-PVM--DGMEFLRHAKLK---TRAKICMLSSVAVSGSPH 103 (145)
T ss_dssp HHHTTCTTEEE-EEEESSHHHHHHHHHHCTTCCEEEECTTS-CCC--TTCHHHHHHHHH---CCCEEC-CBSSCSTTSSH
T ss_pred HHHHHCCCCEE-EEEECCHHHHHHHHHHCCCCCEEEECCCC-CCC--CHHHHHHHHHHC---CCCCEEEEEEEECCCHHH
T ss_conf 99985999469-99989999999999836999899987899-999--999999999856---996939999960799899
Q ss_pred HHHHHHCCCCEEECCCCCCCCC
Q ss_conf 9989980998994052068999
Q gi|254780468|r 924 IKELTRMGCDYIQDSHVASPLG 945 (963)
Q Consensus 924 ~~~l~~~G~d~~QG~~~~~P~~ 945 (963)
.....++|.+ | |+.||..
T Consensus 104 ~~~a~~~Ga~---~-yl~KP~~ 121 (145)
T 3kyj_B 104 AARARELGAD---G-VVAKPSG 121 (145)
T ss_dssp HHHHHHTTCS---C-CCBCCCS
T ss_pred HHHHHHCCCC---E-EEECCCC
T ss_conf 9999986998---9-9989998
No 357
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA; 2.30A {Thermus thermophilus HB8}
Probab=20.10 E-value=21 Score=10.75 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHCCCCH
Q ss_conf 148999999998819995
Q gi|254780468|r 808 NELCEGMQALISKTLYSP 825 (963)
Q Consensus 808 ~~f~~~l~~~l~~~~~~~ 825 (963)
.+-.+.+.+++++..+.|
T Consensus 294 ~~~~~~~l~li~~g~i~p 311 (343)
T 2eih_A 294 KSRLFPILRFVEEGKLKP 311 (343)
T ss_dssp GGGHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHCCCCEE
T ss_conf 999999999998599810
Done!