RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family
protein [Candidatus Liberibacter asiaticus str. psy62]
(963 letters)
>gnl|CDD|34606 COG5001, COG5001, Predicted signal transduction protein containing
a membrane domain, an EAL and a GGDEF domain [Signal
transduction mechanisms].
Length = 663
Score = 209 bits (534), Expect = 2e-54
Identities = 119/414 (28%), Positives = 216/414 (52%), Gaps = 12/414 (2%)
Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
D+LTG+PNR+ F L L +A R + VID+D +K +ND G A GD +L+ +
Sbjct: 231 DSLTGLPNRRRFFAELDARLA-AARQSGRRLVLGVIDLDGFKPVNDAFGHATGDRLLIEV 289
Query: 596 TRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
RR+ P + ARL G+ F +I+ E+++L++A A A+ +S+ P +L + V
Sbjct: 290 GRRLKAFDGAPILAARLGGDEFALIIPALEDDALRVAG-ARALCESLQAPYDLRGVRVQV 348
Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
ASIG A + S TS ++ + A+ A+YHAK G F R + D ++++ L
Sbjct: 349 GASIGIAPFPSGADTSEQLFERADYALYHAKQNGKGAAVLFDARHEAAIRDMAVVEQALR 408
Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
A EL + + PI+ ++ + + LEAL +W P+ G + F+ IAE I +
Sbjct: 409 SADLEQELSVHFQPIVDIVSGKTIALEALARWHSPEIGPVPPDVFIGIAERSGQIVELTR 468
Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
+L + R+ +W + IN++++DL E + A++S++ +P R+
Sbjct: 469 LLLAKALREARAWPMDVRVS-----INLSARDLASMENVRRLLAIVSESCIAPHRLDFEI 523
Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
+E+ ++ + +++R L L ++G+ LDDFGT S LS+L +P D +K + S ++
Sbjct: 524 TETAIVCDFDQARDALAALHELGVRTALDDFGTGYSSLSHLRALPLDKIKIDRSFVSDLE 583
Query: 893 EKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
E + I+R+++ + +N+ + + + E + +G +Q H A P+
Sbjct: 584 ENPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGYHYARPM 637
>gnl|CDD|30163 cd01948, EAL, EAL domain. This domain is found in diverse bacterial
signaling proteins. It is called EAL after its conserved
residues and is also known as domain of unknown function
2 (DUF2). The EAL domain has been shown to stimulate
degradation of a second messenger, cyclic di-GMP, and is
a good candidate for a diguanylate phosphodiesterase
function. Together with the GGDEF domain, EAL might be
involved in regulating cell surface adhesiveness in
bacteria..
Length = 240
Score = 181 bits (461), Expect = 8e-46
Identities = 80/238 (33%), Positives = 135/238 (56%), Gaps = 4/238 (1%)
Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
DL A+E E L Y PI+ L IVG EAL++W HP+ G IS +EF+ +AEE +I
Sbjct: 1 ADLRRALERGEFELYYQPIVDLRTGRIVGYEALLRWRHPEGGLISPAEFIPLAEETGLIV 60
Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
+ ++LE R + W+ P + + +N++++ L D + + + L+++T P R+
Sbjct: 61 ELGRWVLEEACRQLARWQAGG--PDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRL 118
Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
L +ES ++ + E + L RLR +G+ + LDDFGT S LSYL +P D +K + S +
Sbjct: 119 VLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFV 178
Query: 889 TGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
+ AI+R+II +A ++ ++A+ + E ++ L +GCDY+Q + PL
Sbjct: 179 RDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYLFSRPL 236
>gnl|CDD|32382 COG2200, Rtn, FOG: EAL domain [Signal transduction mechanisms].
Length = 256
Score = 175 bits (445), Expect = 6e-44
Identities = 82/258 (31%), Positives = 141/258 (54%), Gaps = 5/258 (1%)
Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
R+ ++ DL A+EN E L Y PI+ L IVG EAL++W HP G IS EF+ +AEE
Sbjct: 1 RLQLERDLRQALENGEFSLYYQPIVDLATGRIVGYEALLRWRHPDGGLISPGEFIPLAEE 60
Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
+I + ++LE R + +W P+ + +N++ L L + + L+++
Sbjct: 61 TGLIVELGRWVLEEACRQLRTWPRA---GPLRLAVNLSPVQLRSPGLVDLLLRLLARLGL 117
Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
P R+ L +ES ++ + + + LL +LR++G+ + LDDFGT S LSYL +P D +K
Sbjct: 118 PPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKI 177
Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
+ S + + + AI+R+I+ +A + T++A+ + E + L +GCDY+Q +
Sbjct: 178 DRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFS 237
Query: 942 SPLGFNSILKLLKERFPL 959
PL +++ LL
Sbjct: 238 RPLPADALDALLSSSQSR 255
>gnl|CDD|144230 pfam00563, EAL, EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues. The EAL domain is a good candidate
for a diguanylate phosphodiesterase function. The domain
contains many conserved acidic residues that could
participate in metal binding and might form the
phosphodiesterase active site.
Length = 233
Score = 156 bits (397), Expect = 2e-38
Identities = 80/232 (34%), Positives = 128/232 (55%), Gaps = 4/232 (1%)
Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
A+EN E L + PI+ L +++G EAL++W HP G IS EF+ +AE L +I ++ +
Sbjct: 4 ALENGEFSLYFQPIVDLRTGKVIGYEALLRWQHPDGGLISPEEFLPLAERLGLIAELDRW 63
Query: 774 MLERIARDIISWRDQANMPPIFIL-INIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
+LE+ + WR+ A +PP L +N++ LLD E + AL PSR+ L
Sbjct: 64 VLEQALAQLAEWRENALLPPDLPLSVNLSPASLLDPSFLEALLALKQ-GGLPPSRLVLEI 122
Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-S 891
+ES + + L RLR +G L LDDFGT S LSYL +P D +K + S + S
Sbjct: 123 TESALDEDLRLLE-ALARLRSLGFRLALDDFGTGYSSLSYLSRLPPDYIKIDRSFIKDLS 181
Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
+ A+LR++I +A+ + ++A+ + E ++ L +G DY+Q + P
Sbjct: 182 DPESRALLRALIALARELGIKVVAEGVETEEQLELLKELGIDYVQGYLFSKP 233
>gnl|CDD|143635 cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain.
Diguanylate-cyclase (DGC) or GGDEF domain: Originally
named after a conserved residue pattern, and initially
described as a domain of unknown function 1 (DUF1). This
domain is widely present in bacteria, linked to a wide
range of non-homologous domains in a variety of cell
signaling proteins. The domain shows homology to the
adenylyl cyclase catalytic domain. This correlates with
the functional information available on two
GGDEF-containing proteins, namely diguanylate cyclase
and phosphodiesterase A of Acetobacter xylinum, both of
which regulate the turnover of cyclic diguanosine
monophosphate. Together with the EAL domain, GGDEF might
be involved in regulating cell surface adhesion in
bacteria.
Length = 158
Score = 147 bits (374), Expect = 1e-35
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 6/162 (3%)
Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
+ D LTG+PNR++F +RL +L A +++IDID +K+IND G A GD+VL
Sbjct: 1 YTDPLTGLPNRRAFEERLERLLAR-ARRSGRPLALLLIDIDHFKQINDTYGHAAGDEVLK 59
Query: 594 SLTRRIGELLKFPDILARLSGNRFGIIL--ISENNSLKIADFAIAMRKSIAMPINLLERE 651
+ R+ L+ D++ARL G+ F I+L + +A+ +R++I P + +E
Sbjct: 60 EVAERLRSSLRESDLVARLGGDEFAILLPGTDLEEAEALAE---RLREAIEEPFFIDGQE 116
Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
I VTASIG A++ + E+L+ A+ A+Y AK G N V
Sbjct: 117 IRVTASIGIATYPEDGEDAEELLRRADEALYRAKRSGRNRVV 158
>gnl|CDD|32381 COG2199, COG2199, FOG: GGDEF domain [Signal transduction
mechanisms].
Length = 181
Score = 135 bits (340), Expect = 6e-32
Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 3/183 (1%)
Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
+ +T +K+ E + A D LTG+PNR++F +RL L A ++++D+
Sbjct: 1 ALLRLLTRLRKAEERLERLALHDPLTGLPNRRAFEERLERALA-RARRHGEPLALLLLDL 59
Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
D +K+IND G A GD+VL + RR+ L+ D++ARL G+ F ++L + + A
Sbjct: 60 DHFKQINDTYGHAAGDEVLREVARRLRSNLREGDLVARLGGDEFAVLLPGTSLE-EAARL 118
Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML-KNAELAMYHAKHRGGNHV 692
A +R ++ P L E+ VT SIG A + +E+L + A+LA+Y AK G N V
Sbjct: 119 AERIRAALEEPFFLGGEELRVTVSIGVALYPEDGSDDAELLLRRADLALYRAKRAGRNRV 178
Query: 693 ESF 695
F
Sbjct: 179 VVF 181
>gnl|CDD|144545 pfam00990, GGDEF, GGDEF domain. This domain is found linked to a
wide range of non-homologous domains in a variety of
bacteria. It has been shown to be homologous to the
adenylyl cyclase catalytic domain and has diguanylate
cyclase activity. This observation correlates with the
functional information available on two GGDEF-containing
proteins, namely diguanylate cyclase and
phosphodiesterase A of Acetobacter xylinum, both of
which regulate the turnover of cyclic diguanosine
monophosphate.
Length = 159
Score = 134 bits (340), Expect = 1e-31
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
A D LTG+PNR+ F + L L + L ++++D+D +K+IND G AVGD+VL
Sbjct: 1 AAHDPLTGLPNRRYFEEELEQELQRARRQSPL--ALLLLDLDNFKRINDTYGHAVGDEVL 58
Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIIL--ISENNSLKIADFAIAMRKSIAMPINLLER 650
+ +R+ L+ D++ARL G+ F I+L S + ++A+ + ++ +P L
Sbjct: 59 QEVAQRLSSSLRRSDLVARLGGDEFAILLPDTSLEGAQELAERIRRLLAALKIPHTLSGL 118
Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
+ VT SIG A++ + + ++LK A+ A+Y AK++G N
Sbjct: 119 PLYVTISIGIAAYPNDGEDAEDLLKRADQALYQAKNQGRNR 159
>gnl|CDD|34551 COG4943, COG4943, Predicted signal transduction protein containing
sensor and EAL domains [Signal transduction mechanisms].
Length = 524
Score = 128 bits (322), Expect = 9e-30
Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 5/245 (2%)
Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
A+E EL + Y PI+ L + VG EAL +W +S F+ +AEE MI+ I +
Sbjct: 276 AIERRELCVHYQPIVDLATGKCVGAEALARWPQEDGTVVSPDVFIPLAEESGMIEQITDY 335
Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
++ + RD+ + + IN+++ DL L + + +++ P +I L +
Sbjct: 336 VIRNVFRDLGDL--LRQHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQIALELT 393
Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GS 891
E +P++ ++ RLR+ G + +DDFGT S L YL +P D +K + S + G+
Sbjct: 394 ERTFA-DPKKMTPIILRLREAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGT 452
Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
I II MAK++ I+A+ + E + L + G Y Q + L + L
Sbjct: 453 DSASHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWLRKRGVHYGQGWLFSKALPAQAFLD 512
Query: 952 LLKER 956
+++
Sbjct: 513 WAEQQ 517
>gnl|CDD|33501 COG3706, PleD, Response regulator containing a CheY-like receiver
domain and a GGDEF domain [Signal transduction
mechanisms].
Length = 435
Score = 105 bits (262), Expect = 1e-22
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
++SLE + A D LTG+ NR+ F + L + A + +++++DID +K+IND
Sbjct: 260 RESLERLQELALVDGLTGLFNRRYFDEHLADLWK-RALREGRPLSLLMLDIDDFKEINDT 318
Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL--ISENNSLKIADFAIAMRKS 640
G VGD+VL + RR+ + ++ D++AR G F ++L ++ IA+
Sbjct: 319 YGHDVGDEVLRQVARRLRQTVRGLDLVARYGGEEFAVVLPDTDLEAAIAIAERIRQKINE 378
Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
+ L + VT SIG A + + E+LK A+ A+Y AK G N V R
Sbjct: 379 LPFVHELSREPLEVTISIGVAEGKPGEDSIEELLKRADKALYKAKASGRNRVVVKR 434
>gnl|CDD|32384 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction
mechanisms].
Length = 232
Score = 44.2 bits (101), Expect = 2e-04
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
ER + S D +W D + P +LG + G + L ++
Sbjct: 112 ERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDL-IHPEDEERRE 170
Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
+ + R G L+ E+RVR D + I+ +G+I+ +GIA DITE+K+
Sbjct: 171 LELARALAEGRGGPLEIEYRVRRKDGERVRWILSRISPVRDDGEIVGVVGIARDITERKQ 230
Query: 525 S 525
+
Sbjct: 231 A 231
>gnl|CDD|35676 KOG0455, KOG0455, KOG0455, Homoserine dehydrogenase [Amino acid
transport and metabolism].
Length = 364
Score = 35.0 bits (80), Expect = 0.11
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
L ++ + L A V V D + DVL + + L + G L
Sbjct: 18 LLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGSALSLD 77
Query: 607 DILARLSGNRFGIILISENNSLKIADF---AIAMRKSIAMP 644
++A+L G+ +IL+ S++IA+ + + IA P
Sbjct: 78 ALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATP 118
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 33.9 bits (78), Expect = 0.23
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISEN 625
T++ DI + + D LG GD++L L R L+ + D+ + G+ F +++ +
Sbjct: 3 TILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEF-MVVSGLD 61
Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
+ FA MR++++ +N V IG +
Sbjct: 62 HPAAAVAFAEDMREAVSA-LN-QSEGNPVRVRIGIHT 96
>gnl|CDD|31478 COG1287, COG1287, Uncharacterized membrane protein, required for
N-linked glycosylation [General function prediction
only].
Length = 773
Score = 33.5 bits (76), Expect = 0.31
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL--- 371
LA+++L + + G+ + L ++F L + K+L +I L
Sbjct: 144 LAALLLALAPGYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGL 203
Query: 372 ---------VGGLVLIVILIGFTVIQHVLA 392
G ++ IL+ + ++ VLA
Sbjct: 204 ALGLLALAWGGYYYILAILLLYALVLLVLA 233
>gnl|CDD|31669 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 32.6 bits (74), Expect = 0.50
Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 16/180 (8%)
Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRS------------SMLIPTFAMAWVVLGYIS 233
+ G++I V L+ +F S+ I T ++ +V +
Sbjct: 272 VNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLRIVGYFNY 331
Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
G L P LLI IA+ SS +I + + + + + ++
Sbjct: 332 SASGLLVPPALGP--MLLILLVFLRIAIFSSSMIAIALLYLFGGSYN-SEIALIALLSSF 388
Query: 294 AILFCMSFYYPMVTASIARITLASI-VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
+ L + + + LA + +L I + Y+ I A++ + I
Sbjct: 389 SALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFLSGLLSGI 448
>gnl|CDD|35814 KOG0594, KOG0594, KOG0594, Protein kinase PCTAIRE and related
kinases [General function prediction only].
Length = 323
Score = 31.0 bits (70), Expect = 1.7
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
+LIS + LK+ADF +A ++ ++P+ E+
Sbjct: 151 LLISSSGVLKLADFGLA--RAFSIPMRTYTPEVV 182
>gnl|CDD|35386 KOG0164, KOG0164, KOG0164, Myosin class I heavy chain [Cytoskeleton].
Length = 1001
Score = 30.3 bits (68), Expect = 2.3
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 11/134 (8%)
Query: 25 MVSPSFAI--EPINISSSDRVLDLTSITRIYVNQGED-FQVFTAADIDGISRRIEVSASS 81
+++ +P + + L ++T I V+ G D V +D + ++
Sbjct: 875 LLTDRHVYKLDPKKQKVMKQTIPLANLTGISVSSGSDQLFVLHVSDNKDLVVCLDSVLQE 934
Query: 82 IRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGF-SLDR 140
G+ V LA + + L V V S G R ISV P+ D
Sbjct: 935 -DRVGE-LVGKLAAHYNDEGRSLNV-----NVTSIISCRLPGKDRTISVEPAGNQEVPDF 987
Query: 141 IPNSDSDVFRITIN 154
+ S + +
Sbjct: 988 RKKNGSFILEVPRQ 1001
>gnl|CDD|144801 pfam01338, Bac_thur_toxin, Bacillus thuringiensis toxin.
Length = 227
Score = 30.2 bits (68), Expect = 3.0
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 16/113 (14%)
Query: 504 NSNGDILRYIGIANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
S+ DI + I I + + I L NAFQ L + L ++ T D
Sbjct: 12 PSSADITNFNEI-FYIEDPNYIPQAIHLANAFQGALVPTDFGLTLRFDFEKALQIANTID 70
Query: 563 NLRPTVMVID-------------IDKYKKI-NDVLGIAVGDDVLVSLTRRIGE 601
V +D IDK +I VLG+ + V SLT I E
Sbjct: 71 PEGAVVNYVDQTVIQTNNEVSVMIDKVIEILKSVLGVVLNSTVKQSLTAAITE 123
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 30.1 bits (69), Expect = 3.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
ILI+ + LK+ADF +A ++ +P+ E+ VT
Sbjct: 129 ILINRDGVLKLADFGLA--RAFGIPLRTYTHEV-VT 161
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 30.0 bits (68), Expect = 3.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 620 ILISENNSLKIADFAIAMRKSI 641
+LISE LK+ADF +A KS+
Sbjct: 134 LLISERGELKLADFGLARAKSV 155
>gnl|CDD|30696 COG0348, NapH, Polyferredoxin [Energy production and conversion].
Length = 386
Score = 29.2 bits (65), Expect = 5.3
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 9/109 (8%)
Query: 283 GYITFSGIACIAILFCMS------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
G G+ CI C+ + + IA T ++ + + Y
Sbjct: 238 GIDIRDGLECIGCGRCIDACDDDMLKFNLPFGLIAYSTFMALPTIGMSACLRPRLCAYG- 296
Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDI--IQPALVGGLVLIVILIG 383
VL + + + +F + + + D D + I G
Sbjct: 297 GVLQLVSPLGLFRLKVRDPLILLVCRDRDCLFACNVGINDYTGKFINKG 345
>gnl|CDD|34851 COG5254, ARV1, Predicted membrane protein [Function unknown].
Length = 239
Score = 29.2 bits (65), Expect = 5.7
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY-ITFSGIACIAILF 297
S + LSS +F+F+ W + I S +AC + +
Sbjct: 140 AGFVCLSSALLLSSFYYLFMFIMTMWKYQCEESLLVIELSCVACNSPVI 188
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 29.2 bits (66), Expect = 6.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 620 ILISENNSLKIADFAIA 636
IL+ EN KIADF +A
Sbjct: 134 ILVGENLVCKIADFGLA 150
>gnl|CDD|32977 COG3164, COG3164, Predicted membrane protein [Function unknown].
Length = 1271
Score = 29.1 bits (65), Expect = 6.7
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 390 VLATGYFSQGIFS------DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
+ T G+ DG +A+ GS D+V + V TP+I+ +G+A+
Sbjct: 1160 IRGTATIKDGVARTDDLKVDGPAADIAMKGSVDLVTR--TIDMEVVVTPEISATVGVAAA 1217
Query: 444 SMHGPI 449
PI
Sbjct: 1218 FAVNPI 1223
>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase. Crotonyl-CoA
reductase, a member of the medium chain
dehydrogenase/reductase family, catalyzes the
NADPH-dependent conversion of crotonyl-CoA to
butyryl-CoA, a step in (2S)-methylmalonyl-CoA
production for straight-chain fatty acid biosynthesis.
Like enoyl reductase, another enzyme in fatty acid
synthesis, crotonyl-CoA reductase is a member of the
zinc-dependent alcohol dehydrogenase-like medium chain
dehydrogenase/reductase family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 393
Score = 28.9 bits (65), Expect = 6.9
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 111 RLVGSHFFS-------PDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVV 159
R+ GSHF + L + I S+ FSLD P++ + R + G +
Sbjct: 335 RIQGSHFANDREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVGNMA 390
>gnl|CDD|35476 KOG0255, KOG0255, KOG0255, Synaptic vesicle transporter SVOP and
related transporters (major facilitator superfamily)
[General function prediction only].
Length = 521
Score = 29.0 bits (64), Expect = 7.1
Identities = 11/108 (10%), Positives = 29/108 (26%), Gaps = 12/108 (11%)
Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA 280
F++ + L G L SG + + + + + R
Sbjct: 333 VFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELP----------AYFRNGLLLPEFGRRPP 382
Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328
+ +GI + + + + + I + +I+
Sbjct: 383 LFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIG--SAFNLIF 428
>gnl|CDD|34100 COG4393, COG4393, Predicted membrane protein [Function unknown].
Length = 405
Score = 28.7 bits (64), Expect = 7.5
Identities = 28/196 (14%), Positives = 66/196 (33%), Gaps = 45/196 (22%)
Query: 157 AVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYR--GIIIGVASLLAIFLTIFYMVNR 214
+++F + +P ++ F D +N+ +L R I++ + +++ I L++ + +
Sbjct: 90 LLLSFCAALHWGFMPNLF---AIFGTDVINTDSLLRLGAILLALLTIILIALSLQKVYFQ 146
Query: 215 S-SMLIPTFAMAWVVLGYISID---FGFLSKLVNLPSGELLIWRACSEIALSS------- 263
S L P A+ ++ L +L L + L+ S +A
Sbjct: 147 LKSSLAPLLALLIYLILSFPFSARGVLALMRLRFLKLTKSLV----SFVAKFENKSTFYI 202
Query: 264 ---SLIIFLFMYLHWNRWHAKVGYITF----------------------SGIACIAILFC 298
I+ + L + K +T I ++F
Sbjct: 203 YILFTILAIIFLLFLFKDSRKRHIVTQKNNAILKRKKAALKNNKHRLLSLAFFSILVVFS 262
Query: 299 MSFYYPMVTASIARIT 314
+ Y+ V + ++
Sbjct: 263 IQLYWDKVASKPPALS 278
>gnl|CDD|35808 KOG0588, KOG0588, KOG0588, Serine/threonine protein kinase [Cell
cycle control, cell division, chromosome partitioning].
Length = 786
Score = 28.5 bits (63), Expect = 8.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLE 649
+L+ N++KIADF +A S+ +P LLE
Sbjct: 143 LLLDVKNNIKIADFGMA---SLEVPGKLLE 169
>gnl|CDD|35427 KOG0206, KOG0206, KOG0206, P-type ATPase [General function prediction
only].
Length = 1151
Score = 28.7 bits (64), Expect = 8.6
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 20/110 (18%)
Query: 260 ALSSSLIIFLFMYLHWNRWHAKV-----GYITFSGIACIAILFCMSFYYPMVTASIARIT 314
SL+IF YL + Y T I+ ++ + T+ I
Sbjct: 949 GFYQSLVIFFLPYLVFEEQAVTSNGLTADYWTLGTTVFTIIVIVVNLKIALETSYWTWIN 1008
Query: 315 ----LASIVLYYTYFIIYHGM-----------KGYERAVLLIPAWILIFI 349
SI+L++ + IY + E + W+ + +
Sbjct: 1009 HIVIWGSILLWFVFLFIYSELTPAISTPDPFYGVAEHLLSSPSFWLTLLL 1058
>gnl|CDD|38815 KOG3609, KOG3609, KOG3609, Receptor-activated Ca2+-permeable cation
channels (STRPC family) [Inorganic ion transport and
metabolism, Signal transduction mechanisms].
Length = 822
Score = 28.8 bits (64), Expect = 8.6
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV--TASIARITLASIVLY---YTYF- 325
Y W R K + + + + + + + + R + + Y F
Sbjct: 301 YSGWRRKGIKPKFDAWRFLRLCFPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLVFL 360
Query: 326 --------IIYHGMKGYERAVLLIPAWILIFIWFIGL 354
I ++ R V ILI++W +GL
Sbjct: 361 ILLILASLIGFYFAWTDSRGVTPQALEILIYLWVMGL 397
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.326 0.141 0.420
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 12,033,017
Number of extensions: 695168
Number of successful extensions: 2701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2650
Number of HSP's successfully gapped: 176
Length of query: 963
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 860
Effective length of database: 4,038,010
Effective search space: 3472688600
Effective search space used: 3472688600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)