RPSBLAST alignment of GI: 254780468 and protein with PDBid: 3gdi
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} Length = 309
Score = 45.1 bits (105), Expect = 8e-05
Identities = 17/202 (8%), Positives = 46/202 (22%), Gaps = 1/202 (0%)
Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
+ + L+ Q + +
Sbjct: 103 SFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPRIPP 162
Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
++ + + D + L L +H +DR I +
Sbjct: 163 EKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQA 222
Query: 475 RRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
R R + ++ + N + +I + + + +
Sbjct: 223 GGQPFDYSPIRFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAPP 282
Query: 534 FQDNLTGIPNRQSFLDRLTTIL 555
+ T P+ Q +++ +L
Sbjct: 283 CPEEKTPHPSVQELTEQIHRLL 304