RPSBLAST alignment of GI: 254780468 and protein with PDBid: 3mqq
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A Length = 120
Score = 40.0 bits (93), Expect = 0.002
Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
R++ +D S V G + ++ A + W + R + +
Sbjct: 40 ADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL-D 98
Query: 505 SNGDILRYIGIANDITEQKK 524
+ + D++ ++
Sbjct: 99 RTAPLAAGVWTFEDLSATRR 118