BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family
protein [Candidatus Liberibacter asiaticus str. psy62]
(963 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 963
Score = 1953 bits (5060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/963 (100%), Positives = 963/963 (100%)
Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF
Sbjct: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
Query: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP
Sbjct: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF
Sbjct: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS
Sbjct: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS
Sbjct: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK
Sbjct: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD
Sbjct: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ
Sbjct: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG
Sbjct: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG
Sbjct: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF
Sbjct: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL
Sbjct: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR
Sbjct: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN
Sbjct: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900
PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR
Sbjct: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900
Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV
Sbjct: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
Query: 961 KNT 963
KNT
Sbjct: 961 KNT 963
>gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
Length = 266
Score = 53.9 bits (128), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
D L+G+ N +F+ L + N + +++ DID +K+IND G VGD V+ L
Sbjct: 107 DCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLER-EIT 653
+ ++ + P + RL G F + + + A A +RK I IN+ I
Sbjct: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIH 217
Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
+T S G A + S+ ++ A+ A+Y AK G N V F
Sbjct: 218 ITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258
>gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 284
Score = 27.3 bits (59), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 534 FQDNLTGIPNRQSFLDRL------TTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
F+DN + ++DRL T ++D + + N+R +V + ++ I +GIA
Sbjct: 87 FRDN-------KKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIA 139
Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGN---RFGIILISENNSLKIADFAIAMRKSIAM 643
G+ ++ S R I E K P ++ SG + GI+ + + L AI M K +
Sbjct: 140 AGEAIVKSCERAIAE--KCPLVMFTASGGARMQEGILSLMQ---LPRTTIAINMLKDAGL 194
Query: 644 P 644
P
Sbjct: 195 P 195
>gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str. psy62]
Length = 111
Score = 25.4 bits (54), Expect = 4.8, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 32 IEPINISSSDRVL-DLTSITRIYVNQGEDFQVFTAADIDGI 71
IEP +S D VL S T I +N GE++ V +DI GI
Sbjct: 64 IEP-EVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGI 103
>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
asiaticus str. psy62]
Length = 480
Score = 25.0 bits (53), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALI 818
+ N+P +FI I KDL DN+LC+G+ I
Sbjct: 310 NSENVPGLFIADGI--KDL-DNKLCQGISETI 338
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 25.0 bits (53), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 865 TKCSLLSYLGYIPFDTVKFNGSL 887
TK SL +G IP DT+ FN +L
Sbjct: 425 TKESLRQTIGIIPQDTILFNDTL 447
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 24.6 bits (52), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 878 FDT-VKFNGSLMTGSTEKRIAILRSII 903
+DT V NGS ++G ++RIAI R+++
Sbjct: 479 YDTYVGENGSNLSGGQKQRIAIARAML 505
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.141 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 606,995
Number of Sequences: 1233
Number of extensions: 25733
Number of successful extensions: 88
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 16
length of query: 963
length of database: 328,796
effective HSP length: 83
effective length of query: 880
effective length of database: 226,457
effective search space: 199282160
effective search space used: 199282160
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 43 (21.2 bits)