Query gi|254780469|ref|YP_003064882.1| zinc-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs 121 out of 410
Neff 4.0
Searched_HMMs 33803
Date Wed Jun 1 13:10:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780469.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1lv3_A Hypothetical protein Y 99.9 2.2E-23 6.6E-28 154.0 3.6 57 3-59 2-62 (68)
2 >1mty_D Methane monooxygenase 84.4 0.24 7.2E-06 29.3 0.2 24 12-35 4-43 (55)
3 >2inc_A Toluene, O-xylene mono 77.6 0.83 2.5E-05 26.2 1.0 29 10-38 33-73 (94)
4 >2d8q_A BLU protein, zinc fing 54.8 12 0.00036 19.6 3.1 35 5-39 10-49 (70)
5 >2apo_B Ribosome biogenesis pr 48.4 8.9 0.00026 20.4 1.6 18 7-24 15-32 (60)
6 >2aus_D NOP10, ribosome biogen 47.3 6.4 0.00019 21.2 0.7 18 6-23 13-30 (60)
7 >2inp_A Phenol hydroxylase com 45.2 6.5 0.00019 21.2 0.5 22 14-35 3-37 (45)
8 >2ecg_A Baculoviral IAP repeat 43.6 12 0.00036 19.6 1.7 21 9-29 24-44 (44)
9 >2das_A Zinc finger MYM-type p 43.4 17 0.00051 18.8 2.5 30 5-34 15-53 (62)
10 >1mo9_A ORF3; nucleotide bindi 36.0 26 0.00077 17.8 2.4 26 28-53 31-56 (86)
11 >2k5c_A Uncharacterized protei 32.1 15 0.00045 19.1 0.7 10 10-19 8-17 (95)
12 >3eb5_A Baculoviral IAP repeat 28.9 17 0.00051 18.8 0.5 19 9-27 54-72 (74)
13 >2dj8_A Protein CBFA2T1; zinc 27.1 41 0.0012 16.7 2.2 32 6-37 11-47 (60)
14 3h0n_A Protein Of Unknown Func 27.0 40 0.0012 16.7 2.1 31 5-35 140-176 (188)
15 >2ecy_A TNF receptor-associate 25.4 29 0.00086 17.5 1.2 39 11-49 16-55 (66)
16 >2yqq_A Zinc finger HIT domain 25.0 61 0.0018 15.7 2.8 35 4-38 6-44 (56)
17 >1jjd_A Metallothionein, SMTA; 24.5 39 0.0011 16.8 1.7 29 6-34 3-37 (55)
18 >2j01_5 50S ribosomal protein 23.3 47 0.0014 16.3 1.9 19 10-28 30-49 (60)
19 >2f9i_B Acetyl-coenzyme A carb 23.3 31 0.00092 17.3 1.0 15 6-20 26-40 (61)
20 >2csy_A Zinc finger protein 18 23.2 33 0.00099 17.2 1.1 14 9-22 14-27 (81)
21 >2w0t_A Lethal(3)malignant bra 23.0 42 0.0012 16.6 1.6 28 7-34 3-35 (43)
22 >2vje_B MDM4 protein; protein, 23.0 16 0.00048 18.9 -0.5 10 11-20 8-17 (63)
23 >1g25_A CDK-activating kinase 21.9 31 0.00092 17.3 0.8 13 9-21 42-54 (65)
24 >2dlq_A GLI-kruppel family mem 21.0 28 0.00084 17.6 0.4 19 7-25 4-22 (31)
25 >1jm7_A BRCA1, breast cancer t 20.1 47 0.0014 16.3 1.4 14 9-22 30-43 (50)
No 1
>>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} (A:)
Probab=99.87 E-value=2.2e-23 Score=154.03 Aligned_cols=57 Identities=30% Similarity=0.628 Sum_probs=48.2
Q ss_pred CCCCCCEECCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 777663044568887877----788687610777443356530898303578888668714
Q gi|254780469|r 3 TSDFRSLKSICPECRKGS----MVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEEV 59 (63)
Q Consensus 3 ~~~~k~~k~~CP~C~k~~----~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~~~~~e~ 59 (63)
++--+.++++||+|||++ +++||||||+|||+||||+||+|+|+||+.+.++.+++.
T Consensus 2 ~~m~~~~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~W~~e~y~Ip~~~~~~~~~~~ 62 (68)
T 1lv3_A 2 SHMSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDW 62 (68)
T ss_dssp --CCCCCEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSSSCCCCSSSCCSSSCSC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 8678885205889998444576687587253766105087886678015798888765565
No 2
>>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:400-454)
Probab=84.35 E-value=0.24 Score=29.27 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=18.3
Q ss_pred CCCCCCCCCC----------------CCCCCCHHHHHHHH
Q ss_conf 5688878777----------------88687610777443
Q gi|254780469|r 12 ICPECRKGSM----------------VEFYPFCSTQCRSI 35 (63)
Q Consensus 12 ~CP~C~k~~~----------------~~~rPFCS~RC~~i 35 (63)
.||+||-++. .+-+-|||+.|+.+
T Consensus 4 idpVCgmpv~~~~~~~~~~~~~~ey~G~~y~FCS~~C~~~ 43 (55)
T 1mty_D 4 IDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERM 43 (55)
T ss_dssp ECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCHHHHH
T ss_conf 2201577611257898776413424881662158066522
No 3
>>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} (A:366-459)
Probab=77.64 E-value=0.83 Score=26.23 Aligned_cols=29 Identities=17% Similarity=-0.009 Sum_probs=20.0
Q ss_pred ECCCCCCCCCCC------------CCCCCCHHHHHHHHHHH
Q ss_conf 445688878777------------88687610777443356
Q gi|254780469|r 10 KSICPECRKGSM------------VEFYPFCSTQCRSIDLS 38 (63)
Q Consensus 10 k~~CP~C~k~~~------------~~~rPFCS~RC~~iDLg 38 (63)
+.+-|+||-.++ .+.+-|||++|+.+-..
T Consensus 33 ~~~DPVcgm~v~~~~~~~~~~~~~G~~y~FCS~~C~~~F~~ 73 (94)
T 2inc_A 33 MCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQI 73 (94)
T ss_dssp TTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCEEEECCCHHHHHHHHC
T ss_conf 57886221788776432013567782540057566777742
No 4
>>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=54.81 E-value=12 Score=19.64 Aligned_cols=35 Identities=11% Similarity=0.347 Sum_probs=25.6
Q ss_pred CCCCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHHHH
Q ss_conf 766304456888787778-----86876107774433565
Q gi|254780469|r 5 DFRSLKSICPECRKGSMV-----EFYPFCSTQCRSIDLSR 39 (63)
Q Consensus 5 ~~k~~k~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg~ 39 (63)
..+.....|..|++++.. ..--|||+.|+..|--.
T Consensus 10 ~~~~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~dW~~ 49 (70)
T 2d8q_A 10 AVAPERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEK 49 (70)
T ss_dssp CCCCCCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHHH
T ss_pred CCCCCCCCCCCCCCHHCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 1489999785779613051789999636899999999999
No 5
>>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} (B:)
Probab=48.45 E-value=8.9 Score=20.40 Aligned_cols=18 Identities=33% Similarity=0.822 Sum_probs=13.0
Q ss_pred CCEECCCCCCCCCCCCCC
Q ss_conf 630445688878777886
Q gi|254780469|r 7 RSLKSICPECRKGSMVEF 24 (63)
Q Consensus 7 k~~k~~CP~C~k~~~~~~ 24 (63)
=+++..||.||.++.+.+
T Consensus 15 YTLk~~cP~cG~~T~~ah 32 (60)
T 2apo_B 15 YTLKEICPKCGEKTVIPK 32 (60)
T ss_dssp EESSSBCSSSCSBCBCCC
T ss_pred EECCCCCCCCCCCCCCCC
T ss_conf 325663777888757667
No 6
>>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B (D:)
Probab=47.33 E-value=6.4 Score=21.21 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=13.3
Q ss_pred CCCEECCCCCCCCCCCCC
Q ss_conf 663044568887877788
Q gi|254780469|r 6 FRSLKSICPECRKGSMVE 23 (63)
Q Consensus 6 ~k~~k~~CP~C~k~~~~~ 23 (63)
.=+++..||.||.++.+.
T Consensus 13 ~YTLk~~cP~cG~~t~~a 30 (60)
T 2aus_D 13 RYTLKETCPVCGEKTKVA 30 (60)
T ss_dssp CEESSSBCTTTCSBCEES
T ss_pred CEECCCCCCCCCCCCCCC
T ss_conf 542345376778835766
No 7
>>2inp_A Phenol hydroxylase component PHN; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_A (A:398-442)
Probab=45.22 E-value=6.5 Score=21.18 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=15.4
Q ss_pred CCCCCCCC-------------CCCCCCHHHHHHHH
Q ss_conf 88878777-------------88687610777443
Q gi|254780469|r 14 PECRKGSM-------------VEFYPFCSTQCRSI 35 (63)
Q Consensus 14 P~C~k~~~-------------~~~rPFCS~RC~~i 35 (63)
|+||-.++ .+-+=|||+.|+.+
T Consensus 3 PVCGM~v~~~~~~~~~~~~~~G~~Y~FCS~~C~~k 37 (45)
T 2inp_A 3 PTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDI 37 (45)
T ss_dssp BSCCEETTEEEEECCEEEEETTEEEEESSHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHEEECCCEEECCCHHHHHH
T ss_conf 74127888855333300010884650057466656
No 8
>>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:32-75)
Probab=43.61 E-value=12 Score=19.65 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=16.0
Q ss_pred EECCCCCCCCCCCCCCCCCHH
Q ss_conf 044568887877788687610
Q gi|254780469|r 9 LKSICPECRKGSMVEFYPFCS 29 (63)
Q Consensus 9 ~k~~CP~C~k~~~~~~rPFCS 29 (63)
...+||+|+++.+...+-|=|
T Consensus 24 ~l~~CPiCR~~i~~~~~i~~s 44 (44)
T 2ecg_A 24 AVDKCPMCYTVITFKQKIFMS 44 (44)
T ss_dssp HCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCCCCCEEEEEEEEEEC
T ss_conf 058695938460414873469
No 9
>>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=43.45 E-value=17 Score=18.77 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=22.3
Q ss_pred CCCCEECCCCCCCCCCC---C------CCCCCHHHHHHH
Q ss_conf 76630445688878777---8------868761077744
Q gi|254780469|r 5 DFRSLKSICPECRKGSM---V------EFYPFCSTQCRS 34 (63)
Q Consensus 5 ~~k~~k~~CP~C~k~~~---~------~~rPFCS~RC~~ 34 (63)
..++.++.|-.|+|+.. . -..=|||.+|-.
T Consensus 15 p~~a~~v~CsgCkk~LqKGQTAyqRkGs~qLFCSt~Cl~ 53 (62)
T 2das_A 15 LTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred CCCCEEEECCCCCHHHHCCCHHHHHCCCCCEEECCHHHC
T ss_conf 987607570114357764524776378721467657661
No 10
>>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, disulphide bond, oxidoreductase; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus PY2} (A:10-28,A:82-148)
Probab=35.97 E-value=26 Score=17.76 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 10777443356530898303578888
Q gi|254780469|r 28 CSTQCRSIDLSRWLHGEYVIAAVEDE 53 (63)
Q Consensus 28 CS~RC~~iDLg~W~~e~Y~Ip~~~~~ 53 (63)
-|+--+-+|+.||.+|.|-.|.-++.
T Consensus 31 FSe~A~Em~~~R~~sg~~WFP~~~ek 56 (86)
T 1mo9_A 31 FSDCAAELMLARTFSGQYWFPDMTEK 56 (86)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCCCTTC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999999998762322587630233
No 11
>>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} (A:)
Probab=32.08 E-value=15 Score=19.10 Aligned_cols=10 Identities=30% Similarity=0.766 Sum_probs=5.2
Q ss_pred ECCCCCCCCC
Q ss_conf 4456888787
Q gi|254780469|r 10 KSICPECRKG 19 (63)
Q Consensus 10 k~~CP~C~k~ 19 (63)
..+||+||++
T Consensus 8 MakCPlCG~~ 17 (95)
T 2k5c_A 8 MAKCPICGSP 17 (95)
T ss_dssp CEECSSSCCE
T ss_pred HHCCCCCCCC
T ss_conf 4238867882
No 12
>>3eb5_A Baculoviral IAP repeat-containing protein 3; ring domain, apoptosis, chromosomal rearrangement, cytoplasm, metal-binding, polymorphism, zinc; 2.00A {Homo sapiens} PDB: 3eb6_A (A:)
Probab=28.93 E-value=17 Score=18.79 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=12.5
Q ss_pred EECCCCCCCCCCCCCCCCC
Q ss_conf 0445688878777886876
Q gi|254780469|r 9 LKSICPECRKGSMVEFYPF 27 (63)
Q Consensus 9 ~k~~CP~C~k~~~~~~rPF 27 (63)
...+||+|++++....+-|
T Consensus 54 ~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 3eb5_A 54 SLRKCPICRSTIKGTVRTF 72 (74)
T ss_dssp GCSBCSSSCCBCCEEEECC
T ss_pred HCCCCCCCCCCCEEEEEEE
T ss_conf 7276876463000658878
No 13
>>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.11 E-value=41 Score=16.66 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHH
Q ss_conf 66304456888787778-----868761077744335
Q gi|254780469|r 6 FRSLKSICPECRKGSMV-----EFYPFCSTQCRSIDL 37 (63)
Q Consensus 6 ~k~~k~~CP~C~k~~~~-----~~rPFCS~RC~~iDL 37 (63)
.......|-.|+++... ..--+||+.|+..|-
T Consensus 11 ~~~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~dW 47 (60)
T 2dj8_A 11 QEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDW 47 (60)
T ss_dssp CCCCSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHH
T ss_conf 0046883868995404848899977028999999999
No 14
>3h0n_A Protein Of Unknown Function Duf1470 (Yp_510353.1) {Jannaschia Sp. Ccs1} (A:)
Probab=27.02 E-value=40 Score=16.70 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCCCEECCC--CCCCCC----CCCCCCCCHHHHHHHH
Q ss_conf 766304456--888787----7788687610777443
Q gi|254780469|r 5 DFRSLKSIC--PECRKG----SMVEFYPFCSTQCRSI 35 (63)
Q Consensus 5 ~~k~~k~~C--P~C~k~----~~~~~rPFCS~RC~~i 35 (63)
.-...-..| |.|.-. +-|.-|=|||.+|...
T Consensus 140 ~~~~Rlr~C~ap~C~~~F~D~Srn~~RrWCsm~CGNR 176 (188)
T 3h0n_A 140 QNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNR 176 (188)
T ss_dssp TCGGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHHH
T ss_pred CCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 8845631157879756888638668834147113238
No 15
>>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=25.43 E-value=29 Score=17.48 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 4568887877788687610777443356530898-30357
Q gi|254780469|r 11 SICPECRKGSMVEFYPFCSTQCRSIDLSRWLHGE-YVIAA 49 (63)
Q Consensus 11 ~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~-Y~Ip~ 49 (63)
..||+|.....++.---|.-+.-.-=|-+|+... ..=|.
T Consensus 16 ~~C~IC~~~~~~pv~~~CgH~fc~~Ci~~~l~~~~~~CP~ 55 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTA 55 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTT
T ss_pred CCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9995878131486577799987789999999978898976
No 16
>>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=25.00 E-value=61 Score=15.67 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCCCCEECCCCCCCCCCC----CCCCCCHHHHHHHHHHH
Q ss_conf 776630445688878777----88687610777443356
Q gi|254780469|r 4 SDFRSLKSICPECRKGSM----VEFYPFCSTQCRSIDLS 38 (63)
Q Consensus 4 ~~~k~~k~~CP~C~k~~~----~~~rPFCS~RC~~iDLg 38 (63)
+..+.....|-+|++++. .=-.++||-.|-.+--.
T Consensus 6 ~s~~~~~~~C~vC~~~~kY~Cp~C~~~yCSl~C~k~Hk~ 44 (56)
T 2yqq_A 6 SGLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKE 44 (56)
T ss_dssp CCCCCCCCCCTTTCSCCSEECTTTCCEESSHHHHHHHHH
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 767859847057989996578998996446789877764
No 17
>>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding protein; NMR {Synechococcus elongatus pcc 7942} (A:)
Probab=24.46 E-value=39 Score=16.79 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCCEECCCCCCCCCC------CCCCCCCHHHHHHH
Q ss_conf 663044568887877------78868761077744
Q gi|254780469|r 6 FRSLKSICPECRKGS------MVEFYPFCSTQCRS 34 (63)
Q Consensus 6 ~k~~k~~CP~C~k~~------~~~~rPFCS~RC~~ 34 (63)
+..||-.||-|-=.+ ...-+.|||+-|+.
T Consensus 3 Vt~mKCAC~~ClCvV~l~~Ai~kdgk~yC~~~CA~ 37 (55)
T 1jjd_A 3 TTLVKCACEPCLCNVDPSKAIDRNGLYYCSEACAD 37 (55)
T ss_dssp -CCBCCSSTTCCCCBCTTTSEESSSCEESSHHHHH
T ss_pred EEEEEECCCCCEEEEEHHHHHHHCCCEEECHHHHC
T ss_conf 37776337883788408998865584056535557
No 18
>>2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (5:)
Probab=23.30 E-value=47 Score=16.32 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=13.0
Q ss_pred ECCCCCCCCCCCCCCC-CCH
Q ss_conf 4456888787778868-761
Q gi|254780469|r 10 KSICPECRKGSMVEFY-PFC 28 (63)
Q Consensus 10 k~~CP~C~k~~~~~~r-PFC 28 (63)
-+.||.||...-..+- |+|
T Consensus 30 l~~C~~cG~~~~pH~vC~~C 49 (60)
T 2j01_5 30 LVPCPECKAMKPPHTVCPEC 49 (60)
T ss_dssp CBCCSSSSSCBCTTCBCTTT
T ss_pred EEECCCCCCCCCCEEECCCC
T ss_conf 46899999820660687989
No 19
>>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:1-61)
Probab=23.30 E-value=31 Score=17.32 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=11.9
Q ss_pred CCCEECCCCCCCCCC
Q ss_conf 663044568887877
Q gi|254780469|r 6 FRSLKSICPECRKGS 20 (63)
Q Consensus 6 ~k~~k~~CP~C~k~~ 20 (63)
...+.++||.|++..
T Consensus 26 p~gLW~KCp~C~~~~ 40 (61)
T 2f9i_B 26 PAGIMTKCPKCKKIM 40 (61)
T ss_dssp CCSSEEECTTTCCEE
T ss_pred CCCCEEECCCCCCEE
T ss_conf 998653588987402
No 20
>>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=23.18 E-value=33 Score=17.16 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=7.3
Q ss_pred EECCCCCCCCCCCC
Q ss_conf 04456888787778
Q gi|254780469|r 9 LKSICPECRKGSMV 22 (63)
Q Consensus 9 ~k~~CP~C~k~~~~ 22 (63)
....||||.....+
T Consensus 14 ~~~~C~IC~~~~~~ 27 (81)
T 2csy_A 14 IPFRCFICRQAFQN 27 (81)
T ss_dssp CCSBCSSSCSBCCS
T ss_pred CCCCCCCCCCCCCC
T ss_conf 75647440230358
No 21
>>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens} (A:)
Probab=23.04 E-value=42 Score=16.61 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=19.9
Q ss_pred CCEECCCCCCCCCC-CC----CCCCCHHHHHHH
Q ss_conf 63044568887877-78----868761077744
Q gi|254780469|r 7 RSLKSICPECRKGS-MV----EFYPFCSTQCRS 34 (63)
Q Consensus 7 k~~k~~CP~C~k~~-~~----~~rPFCS~RC~~ 34 (63)
+.-..+|-.||+.- .. +.+-|||.-|+.
T Consensus 3 ~~~~~~CE~CG~~g~~~~F~~kskRFCSm~CAk 35 (43)
T 2w0t_A 3 GSEPAVCEMCGIVGTREAFFSKTKRFCSVSCSR 35 (43)
T ss_dssp SCCEEECTTTCCEEETTTSCTTTSSSSSHHHHH
T ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 887558887264321455655222275898865
No 22
>>2vje_B MDM4 protein; protein, MDMX protein, double minute 4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction; HET: FLC; 2.2A {Homo sapiens} PDB: 2vjf_B* (B:)
Probab=22.99 E-value=16 Score=18.94 Aligned_cols=10 Identities=30% Similarity=0.704 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q ss_conf 4568887877
Q gi|254780469|r 11 SICPECRKGS 20 (63)
Q Consensus 11 ~~CP~C~k~~ 20 (63)
..||+|-...
T Consensus 8 ~~C~IC~~~~ 17 (63)
T 2vje_B 8 KPCSLCEKRP 17 (63)
T ss_dssp SBCTTTSSSB
T ss_pred CCCCCCCCCC
T ss_conf 9293588567
No 23
>>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} (A:)
Probab=21.94 E-value=31 Score=17.32 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=7.3
Q ss_pred EECCCCCCCCCCC
Q ss_conf 0445688878777
Q gi|254780469|r 9 LKSICPECRKGSM 21 (63)
Q Consensus 9 ~k~~CP~C~k~~~ 21 (63)
.+.+||+|+++..
T Consensus 42 ~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 42 GAGNCPECGTPLR 54 (65)
T ss_dssp TSSSCTTTCCCCS
T ss_pred CCCCCCCCCCCCC
T ss_conf 4788976788232
No 24
>>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:1-31)
Probab=21.03 E-value=28 Score=17.55 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=12.7
Q ss_pred CCEECCCCCCCCCCCCCCC
Q ss_conf 6304456888787778868
Q gi|254780469|r 7 RSLKSICPECRKGSMVEFY 25 (63)
Q Consensus 7 k~~k~~CP~C~k~~~~~~r 25 (63)
++.-+-||+|.|..-.+|+
T Consensus 4 ~~~~v~cptchk~flskyy 22 (31)
T 2dlq_A 4 GSSGVECPTCHKKFLSKYY 22 (31)
T ss_dssp CCSSCCCTTTCCCCSSHHH
T ss_pred CCCCCCCCCCCCCCCCHHH
T ss_conf 8968799999989797766
No 25
>>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} (A:28-77)
Probab=20.09 E-value=47 Score=16.33 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=10.2
Q ss_pred EECCCCCCCCCCCC
Q ss_conf 04456888787778
Q gi|254780469|r 9 LKSICPECRKGSMV 22 (63)
Q Consensus 9 ~k~~CP~C~k~~~~ 22 (63)
-...||+|+++...
T Consensus 30 ~~~~CP~Cr~~~~~ 43 (50)
T 1jm7_A 30 GPSQCPLCKNDITK 43 (50)
T ss_dssp SSCCCTTTSCCCCT
T ss_pred CCCCCCCCCCCCCH
T ss_conf 99989699883876
Done!