Query gi|254780469|ref|YP_003064882.1| zinc-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs 121 out of 410
Neff 4.0
Searched_HMMs 23785
Date Mon May 30 11:46:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780469.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lv3_A Hypothetical protein YA 99.9 1.5E-23 6.2E-28 154.2 3.4 54 6-59 5-62 (68)
2 1l8d_A DNA double-strand break 68.4 0.47 2E-05 26.8 -1.3 20 6-25 43-62 (112)
3 2apo_B Ribosome biogenesis pro 44.0 8.1 0.00034 19.8 1.6 15 8-22 16-30 (60)
4 2das_A Zinc finger MYM-type pr 42.9 9.1 0.00038 19.5 1.7 30 5-34 15-53 (62)
5 2aus_D NOP10, ribosome biogene 40.9 6.5 0.00027 20.3 0.7 14 8-21 15-28 (60)
6 1weo_A Cellulose synthase, cat 38.7 17 0.00069 18.0 2.5 10 11-20 17-26 (93)
7 2inc_A Toluene, O-xylene monoo 35.0 16 0.00066 18.2 1.9 32 7-38 390-438 (491)
8 3ge3_A Toluene-4-monooxygenase 34.2 14 0.00058 18.5 1.5 32 7-38 391-439 (500)
9 2yqq_A Zinc finger HIT domain- 34.0 23 0.00096 17.2 2.6 33 4-36 6-42 (56)
10 2k5c_A Uncharacterized protein 32.1 11 0.00045 19.1 0.7 10 10-19 8-17 (95)
11 2dj8_A Protein CBFA2T1; zinc f 30.9 23 0.00095 17.3 2.2 34 5-38 10-48 (60)
12 2ecg_A Baculoviral IAP repeat- 30.5 18 0.00078 17.7 1.7 21 12-33 27-53 (75)
13 1qxf_A GR2, 30S ribosomal prot 28.2 16 0.00066 18.2 1.0 16 5-20 2-17 (66)
14 1a1t_A Nucleocapsid protein; s 26.9 19 0.00079 17.7 1.2 20 1-20 1-22 (55)
15 3n71_A Histone lysine methyltr 26.5 18 0.00076 17.8 1.1 26 12-37 51-83 (490)
16 2csy_A Zinc finger protein 183 26.3 19 0.00079 17.7 1.1 33 11-48 16-53 (81)
17 2ecm_A Ring finger and CHY zin 26.1 18 0.00077 17.8 1.0 11 10-20 5-15 (55)
18 3pdn_A SET and MYND domain-con 25.2 20 0.00084 17.6 1.1 27 11-37 47-80 (428)
19 2vje_B MDM4 protein; proto-onc 25.2 10 0.00043 19.2 -0.4 15 6-20 3-17 (63)
20 3eb5_A Baculoviral IAP repeat- 25.0 15 0.00065 18.2 0.5 13 11-23 56-68 (74)
21 2gai_A DNA topoisomerase I; zi 24.9 8 0.00033 19.8 -1.0 22 10-34 556-582 (633)
22 2w0t_A Lethal(3)malignant brai 23.9 23 0.00097 17.2 1.2 25 10-34 6-35 (43)
23 1p91_A Ribosomal RNA large sub 23.7 7.7 0.00032 19.9 -1.3 31 9-39 1-31 (269)
24 2inp_A Phenol hydroxylase comp 23.3 26 0.0011 16.9 1.4 31 8-38 389-437 (494)
25 1jjd_A Metallothionein, SMTA; 23.1 30 0.0013 16.5 1.7 30 6-35 3-38 (55)
26 2odd_A Protein CBFA2T1; MYND z 21.2 35 0.0015 16.2 1.7 30 10-39 17-51 (64)
27 2jw6_A Deformed epidermal auto 20.7 38 0.0016 16.0 1.8 31 7-37 6-41 (52)
28 2waq_P DNA-directed RNA polyme 20.6 28 0.0012 16.7 1.1 13 11-23 24-36 (48)
No 1
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=99.87 E-value=1.5e-23 Score=154.17 Aligned_cols=54 Identities=31% Similarity=0.673 Sum_probs=46.5
Q ss_pred CCCEECCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 663044568887877----788687610777443356530898303578888668714
Q gi|254780469|r 6 FRSLKSICPECRKGS----MVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEEV 59 (63)
Q Consensus 6 ~k~~k~~CP~C~k~~----~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~~~~~e~ 59 (63)
-+.++++||+|+|++ +++||||||+||++||||+||+|+|+||+.+.++.+++.
T Consensus 5 ~~~~~v~CP~C~k~v~w~~~~~~rPFCS~RCk~IDLg~W~~e~y~Ip~~~~~~~~~~~ 62 (68)
T 1lv3_A 5 SETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDW 62 (68)
T ss_dssp CCCCEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSSSCCCCSSSCCSSSCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 8885214889998444577787687254766105087886678015798878766575
No 2
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=68.42 E-value=0.47 Score=26.76 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=15.0
Q ss_pred CCCEECCCCCCCCCCCCCCC
Q ss_conf 66304456888787778868
Q gi|254780469|r 6 FRSLKSICPECRKGSMVEFY 25 (63)
Q Consensus 6 ~k~~k~~CP~C~k~~~~~~r 25 (63)
.+..+.+||.||.|.+..|+
T Consensus 43 Lk~a~GkCPvCgreLtEeHk 62 (112)
T 1l8d_A 43 LKKAKGKCPVCGRELTDEHR 62 (112)
T ss_dssp HTTCSEECTTTCCEECHHHH
T ss_pred HHHHCCCCCCCCCCCCHHHH
T ss_conf 99747879988993768989
No 3
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=43.97 E-value=8.1 Score=19.77 Aligned_cols=15 Identities=40% Similarity=1.110 Sum_probs=10.1
Q ss_pred CEECCCCCCCCCCCC
Q ss_conf 304456888787778
Q gi|254780469|r 8 SLKSICPECRKGSMV 22 (63)
Q Consensus 8 ~~k~~CP~C~k~~~~ 22 (63)
+++..||.||.++.+
T Consensus 16 TL~~~Cp~CG~~t~~ 30 (60)
T 2apo_B 16 TLKEICPKCGEKTVI 30 (60)
T ss_dssp ESSSBCSSSCSBCBC
T ss_pred ECCCCCCCCCCCCCC
T ss_conf 354537678784676
No 4
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=42.92 E-value=9.1 Score=19.48 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=22.0
Q ss_pred CCCCEECCCCCCCCCCC---------CCCCCCHHHHHHH
Q ss_conf 76630445688878777---------8868761077744
Q gi|254780469|r 5 DFRSLKSICPECRKGSM---------VEFYPFCSTQCRS 34 (63)
Q Consensus 5 ~~k~~k~~CP~C~k~~~---------~~~rPFCS~RC~~ 34 (63)
..++.++.|-.|+|+.. .-..=|||.+|-.
T Consensus 15 p~~a~~v~Cs~Ckk~LqKGQTAyqRkGs~qLFCSt~Ci~ 53 (62)
T 2das_A 15 LTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred CCCCEEEECCCCCHHHHCCCHHHHHCCCCCEEECCHHHC
T ss_conf 987607570114367764524776378711367547663
No 5
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B
Probab=40.94 E-value=6.5 Score=20.31 Aligned_cols=14 Identities=36% Similarity=0.861 Sum_probs=9.7
Q ss_pred CEECCCCCCCCCCC
Q ss_conf 30445688878777
Q gi|254780469|r 8 SLKSICPECRKGSM 21 (63)
Q Consensus 8 ~~k~~CP~C~k~~~ 21 (63)
+++..||.||.++.
T Consensus 15 TLk~~CP~CG~~t~ 28 (60)
T 2aus_D 15 TLKETCPVCGEKTK 28 (60)
T ss_dssp ESSSBCTTTCSBCE
T ss_pred ECCCCCCCCCCCCC
T ss_conf 35563767878557
No 6
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=38.66 E-value=17 Score=18.02 Aligned_cols=10 Identities=20% Similarity=0.590 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q ss_conf 4568887877
Q gi|254780469|r 11 SICPECRKGS 20 (63)
Q Consensus 11 ~~CP~C~k~~ 20 (63)
..||||...+
T Consensus 17 ~~C~IC~e~~ 26 (93)
T 1weo_A 17 QFCEICGDQI 26 (93)
T ss_dssp CBCSSSCCBC
T ss_pred CCCCCCCCCC
T ss_conf 9986864401
No 7
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 2rdb_A*
Probab=34.98 E-value=16 Score=18.16 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=22.6
Q ss_pred CCEECCCCCCCCCCC-----------------CCCCCCHHHHHHHHHHH
Q ss_conf 630445688878777-----------------88687610777443356
Q gi|254780469|r 7 RSLKSICPECRKGSM-----------------VEFYPFCSTQCRSIDLS 38 (63)
Q Consensus 7 k~~k~~CP~C~k~~~-----------------~~~rPFCS~RC~~iDLg 38 (63)
.++-..|=+|+-|.. .+-+.|||+-|+-|-+.
T Consensus 390 ~~lp~~C~~cq~P~~~~~~~~~~~~~~~~~~~G~~~~fcs~~c~~if~~ 438 (491)
T 2inc_A 390 ETLPTICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQI 438 (491)
T ss_dssp SSCBCBCTTTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHHHHC
T ss_conf 8766604367886312788876543025677884533468145555632
No 8
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A
Probab=34.20 E-value=14 Score=18.47 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCEECCCCCCCCCCC-----------------CCCCCCHHHHHHHHHHH
Q ss_conf 630445688878777-----------------88687610777443356
Q gi|254780469|r 7 RSLKSICPECRKGSM-----------------VEFYPFCSTQCRSIDLS 38 (63)
Q Consensus 7 k~~k~~CP~C~k~~~-----------------~~~rPFCS~RC~~iDLg 38 (63)
.++-..|=+|+-|.. .+.+.|||+-|+-|-+.
T Consensus 391 ~~lp~~C~~cq~P~~~~~~~~~~~~~~~~~~~G~~~~fcs~~c~~if~~ 439 (500)
T 3ge3_A 391 ETLPSVCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQQ 439 (500)
T ss_dssp SSCBCBCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHHHHC
T ss_conf 9888835677886166899876320023446885544577677777731
No 9
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.01 E-value=23 Score=17.22 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCCCCEECCCCCCCCCCC----CCCCCCHHHHHHHHH
Q ss_conf 776630445688878777----886876107774433
Q gi|254780469|r 4 SDFRSLKSICPECRKGSM----VEFYPFCSTQCRSID 36 (63)
Q Consensus 4 ~~~k~~k~~CP~C~k~~~----~~~rPFCS~RC~~iD 36 (63)
+.++...+.|-+|+++.. .=..++||-.|-.+-
T Consensus 6 ~~~~~s~~~C~vC~~~~kY~Cp~C~~~yCSl~C~k~H 42 (56)
T 2yqq_A 6 SGLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKH 42 (56)
T ss_dssp CCCCCCCCCCTTTCSCCSEECTTTCCEESSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 7667597581469499864588989882288898776
No 10
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=32.08 E-value=11 Score=19.10 Aligned_cols=10 Identities=30% Similarity=0.766 Sum_probs=5.2
Q ss_pred ECCCCCCCCC
Q ss_conf 4456888787
Q gi|254780469|r 10 KSICPECRKG 19 (63)
Q Consensus 10 k~~CP~C~k~ 19 (63)
..+||+||++
T Consensus 8 MakCPlCG~~ 17 (95)
T 2k5c_A 8 MAKCPICGSP 17 (95)
T ss_dssp CEECSSSCCE
T ss_pred HHCCCCCCCC
T ss_conf 4238867882
No 11
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=30.86 E-value=23 Score=17.26 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCCCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHHH
Q ss_conf 766304456888787778-----8687610777443356
Q gi|254780469|r 5 DFRSLKSICPECRKGSMV-----EFYPFCSTQCRSIDLS 38 (63)
Q Consensus 5 ~~k~~k~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg 38 (63)
+.......|-.|+++... ..--+||+.|+..|--
T Consensus 10 ~~~~~~~~C~~C~~~~~~~C~~C~~~~YCS~~CQ~~~W~ 48 (60)
T 2dj8_A 10 QQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE 48 (60)
T ss_dssp CCCCCSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHH
T ss_conf 014578847689966046488999876679999999999
No 12
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.47 E-value=18 Score=17.74 Aligned_cols=21 Identities=24% Similarity=0.700 Sum_probs=10.5
Q ss_pred CCCCCCCCCCC------CCCCCHHHHHH
Q ss_conf 56888787778------86876107774
Q gi|254780469|r 12 ICPECRKGSMV------EFYPFCSTQCR 33 (63)
Q Consensus 12 ~CP~C~k~~~~------~~rPFCS~RC~ 33 (63)
.|++|.....+ -|.-||. -|.
T Consensus 27 ~C~IC~~~~~~~v~~pCgH~~~C~-~C~ 53 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVPCGHLVTCK-QCA 53 (75)
T ss_dssp SCSSSCSSCCCBCCSSSCCCCBCH-HHH
T ss_pred CCCCCCCCCCCEEEECCCCCCCCH-HHH
T ss_conf 587598568986995789803298-988
No 13
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=28.15 E-value=16 Score=18.16 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=12.2
Q ss_pred CCCCEECCCCCCCCCC
Q ss_conf 7663044568887877
Q gi|254780469|r 5 DFRSLKSICPECRKGS 20 (63)
Q Consensus 5 ~~k~~k~~CP~C~k~~ 20 (63)
|-+-|+++||.|++..
T Consensus 2 nS~F~~VkCp~C~n~q 17 (66)
T 1qxf_A 2 HSRFVKVKCPDCEHEQ 17 (66)
T ss_dssp CCCEEEEECTTTCCEE
T ss_pred CCEEEEEECCCCCCEE
T ss_conf 8658884999999715
No 14
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=26.87 E-value=19 Score=17.70 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=16.4
Q ss_pred CCCCCCCCEE--CCCCCCCCCC
Q ss_conf 9877766304--4568887877
Q gi|254780469|r 1 MQTSDFRSLK--SICPECRKGS 20 (63)
Q Consensus 1 m~~~~~k~~k--~~CP~C~k~~ 20 (63)
||.+||+.-+ ++|-.|||+-
T Consensus 1 mQrgn~~g~~r~~kCfNCGk~G 22 (55)
T 1a1t_A 1 MQKGNFRNQRKTVKCFNCGKEG 22 (55)
T ss_dssp CCCGGGGGGGGTCBCTTTCCBS
T ss_pred CCCCCCCCCCCCCEEECCCCCC
T ss_conf 9877768888764662678815
No 15
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=26.52 E-value=18 Score=17.78 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=16.2
Q ss_pred CCCCCCCCCCC-------CCCCCHHHHHHHHHH
Q ss_conf 56888787778-------868761077744335
Q gi|254780469|r 12 ICPECRKGSMV-------EFYPFCSTQCRSIDL 37 (63)
Q Consensus 12 ~CP~C~k~~~~-------~~rPFCS~RC~~iDL 37 (63)
.|-.|.+.... .+--|||+.|+..|.
T Consensus 51 ~C~~C~~~~~~~~~C~~C~~~~yCs~~C~~~~~ 83 (490)
T 3n71_A 51 VCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAW 83 (490)
T ss_dssp BCTTTCCBCSCCEECTTTSCCEESSHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCEEECCHHHHHHHH
T ss_conf 101215766777569999815316999999888
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.27 E-value=19 Score=17.69 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 45688878777886-----876107774433565308983035
Q gi|254780469|r 11 SICPECRKGSMVEF-----YPFCSTQCRSIDLSRWLHGEYVIA 48 (63)
Q Consensus 11 ~~CP~C~k~~~~~~-----rPFCS~RC~~iDLg~W~~e~Y~Ip 48 (63)
-.||||......+. .-||.. | +.+|+....+=|
T Consensus 16 ~~C~IC~~~~~~p~~~~C~H~fC~~-C----i~~~~~~~~~CP 53 (81)
T 2csy_A 16 FRCFICRQAFQNPVVTKCRHYFCES-C----ALEHFRATPRCY 53 (81)
T ss_dssp SBCSSSCSBCCSEEECTTSCEEEHH-H----HHHHHHHCSBCS
T ss_pred CCCCCCCCCCCCCEECCCCCCHHHH-H----HHHHHHCCCCCC
T ss_conf 9997687320893784799802499-9----999998199588
No 17
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=26.06 E-value=18 Score=17.76 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=7.3
Q ss_pred ECCCCCCCCCC
Q ss_conf 44568887877
Q gi|254780469|r 10 KSICPECRKGS 20 (63)
Q Consensus 10 k~~CP~C~k~~ 20 (63)
...||||....
T Consensus 5 ~~~C~IC~~~~ 15 (55)
T 2ecm_A 5 SSGCPICLEDI 15 (55)
T ss_dssp CCSCTTTCCCC
T ss_pred CCCCEEECCEE
T ss_conf 98796668482
No 18
>3pdn_A SET and MYND domain-containing protein 3; rossmann fold, zinc finger, methyltransferase, transferase, transferase-transferase inhibitor complex; HET: SFG; 1.70A {Homo sapiens} PDB: 3mek_A*
Probab=25.18 E-value=20 Score=17.56 Aligned_cols=27 Identities=22% Similarity=0.644 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCC-------CCCCCHHHHHHHHHH
Q ss_conf 456888787778-------868761077744335
Q gi|254780469|r 11 SICPECRKGSMV-------EFYPFCSTQCRSIDL 37 (63)
Q Consensus 11 ~~CP~C~k~~~~-------~~rPFCS~RC~~iDL 37 (63)
..|-.|-+.... .+--|||+.|+.-+.
T Consensus 47 ~~C~~C~~~~~~~~~C~~C~~~~yCs~~C~~~~~ 80 (428)
T 3pdn_A 47 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAW 80 (428)
T ss_dssp TBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHH
T ss_pred CCCHHHCCCCCCCCCCCCCCEEEECCHHHHHHHH
T ss_conf 7030116876667559999802226999988877
No 19
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=25.17 E-value=10 Score=19.20 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=7.8
Q ss_pred CCCEECCCCCCCCCC
Q ss_conf 663044568887877
Q gi|254780469|r 6 FRSLKSICPECRKGS 20 (63)
Q Consensus 6 ~k~~k~~CP~C~k~~ 20 (63)
..+....|++|-...
T Consensus 3 ~~n~~~~C~IC~~~~ 17 (63)
T 2vje_B 3 CQNLLKPCSLCEKRP 17 (63)
T ss_dssp CGGGGSBCTTTSSSB
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 578929693689788
No 20
>3eb5_A Baculoviral IAP repeat-containing protein 3; ring domain, apoptosis, chromosomal rearrangement, cytoplasm, metal-binding, polymorphism, zinc; 2.00A {Homo sapiens} PDB: 3eb6_A
Probab=24.95 E-value=15 Score=18.19 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 4568887877788
Q gi|254780469|r 11 SICPECRKGSMVE 23 (63)
Q Consensus 11 ~~CP~C~k~~~~~ 23 (63)
.+||+|++++...
T Consensus 56 ~~CP~CR~~i~~~ 68 (74)
T 3eb5_A 56 RKCPICRSTIKGT 68 (74)
T ss_dssp SBCSSSCCBCCEE
T ss_pred CCCCCCCHHHHCE
T ss_conf 9897869023336
No 21
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A*
Probab=24.86 E-value=8 Score=19.82 Aligned_cols=22 Identities=23% Similarity=0.655 Sum_probs=14.4
Q ss_pred ECCCCCCCCCCC---CCCCCC--HHHHHHH
Q ss_conf 445688878777---886876--1077744
Q gi|254780469|r 10 KSICPECRKGSM---VEFYPF--CSTQCRS 34 (63)
Q Consensus 10 k~~CP~C~k~~~---~~~rPF--CS~RC~~ 34 (63)
..+|| ||+... .++-+| || |+.
T Consensus 556 ~~~C~-cg~~~~~~~~k~G~f~gC~--C~~ 582 (633)
T 2gai_A 556 NQKCS-CGKEMRLSFGKYGFYLKCE--CGK 582 (633)
T ss_dssp EEECT-TSCEEEEEEETTEEEEECS--SSC
T ss_pred CCCCC-CCCCEEEEECCCCCEEEEC--CCC
T ss_conf 99999-9992488837857769703--898
No 22
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=23.88 E-value=23 Score=17.19 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=19.0
Q ss_pred ECCCCCCCCCC-----CCCCCCCHHHHHHH
Q ss_conf 44568887877-----78868761077744
Q gi|254780469|r 10 KSICPECRKGS-----MVEFYPFCSTQCRS 34 (63)
Q Consensus 10 k~~CP~C~k~~-----~~~~rPFCS~RC~~ 34 (63)
-..|-.||..- -.+.|-|||.-|..
T Consensus 6 ~A~CE~CG~iGvkhaFYsK~kRFCs~aCsr 35 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAFFSKTKRFCSVSCSR 35 (43)
T ss_dssp EEECTTTCCEEETTTSCTTTSSSSSHHHHH
T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 548888054231455655222265898754
No 23
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=23.73 E-value=7.7 Score=19.91 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=17.5
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0445688878777886876107774433565
Q gi|254780469|r 9 LKSICPECRKGSMVEFYPFCSTQCRSIDLSR 39 (63)
Q Consensus 9 ~k~~CP~C~k~~~~~~rPFCS~RC~~iDLg~ 39 (63)
|.-.||+|+.+....-.-+.+..|..-|..+
T Consensus 1 m~~~CP~C~~~L~~~~~~l~C~~~h~fd~~k 31 (269)
T 1p91_A 1 MSFSCPLCHQPLSREKNSYICPQRHQFDMAK 31 (269)
T ss_dssp -CBBCTTTCCBCEEETTEEECTTCCEEEBCT
T ss_pred CCEECCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 9574889992101689879838995216566
No 24
>2inp_A Phenol hydroxylase component PHN; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_A
Probab=23.27 E-value=26 Score=16.92 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=22.2
Q ss_pred CEECCCCCCCCCCC------------------CCCCCCHHHHHHHHHHH
Q ss_conf 30445688878777------------------88687610777443356
Q gi|254780469|r 8 SLKSICPECRKGSM------------------VEFYPFCSTQCRSIDLS 38 (63)
Q Consensus 8 ~~k~~CP~C~k~~~------------------~~~rPFCS~RC~~iDLg 38 (63)
++-..|=+|+-|.. .+.+.|||+-|+-|.+.
T Consensus 389 ~lP~~C~~cqvP~~~~~~~~~~~~~~r~~e~~Gr~y~fcSe~c~wif~~ 437 (494)
T 2inp_A 389 TLPQLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFKH 437 (494)
T ss_dssp SCBCBCTTTCCBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHC
T ss_conf 8988147889862137888765444300134880651268266524521
No 25
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding protein; NMR {Synechococcus elongatus pcc 7942} SCOP: g.46.1.1
Probab=23.07 E-value=30 Score=16.55 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCCEECCCCCCCCCC------CCCCCCCHHHHHHHH
Q ss_conf 663044568887877------788687610777443
Q gi|254780469|r 6 FRSLKSICPECRKGS------MVEFYPFCSTQCRSI 35 (63)
Q Consensus 6 ~k~~k~~CP~C~k~~------~~~~rPFCS~RC~~i 35 (63)
+..||-.|+-|-=.+ +..-+.|||+-|++-
T Consensus 3 vt~mKCAC~~C~CvVs~~~Ai~kdGk~YCs~~CA~G 38 (55)
T 1jjd_A 3 TTLVKCACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp -CCBCCSSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred EEEEEECCCCCEEEEEHHHHHHHCCCEEECHHHHCC
T ss_conf 478886178837884089988655840565355578
No 26
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=21.16 E-value=35 Score=16.19 Aligned_cols=30 Identities=17% Similarity=0.500 Sum_probs=21.2
Q ss_pred ECCCCCCCCCCCC-----CCCCCHHHHHHHHHHHH
Q ss_conf 4456888787778-----86876107774433565
Q gi|254780469|r 10 KSICPECRKGSMV-----EFYPFCSTQCRSIDLSR 39 (63)
Q Consensus 10 k~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg~ 39 (63)
...|..|+++... ..--+||+.|+..|-..
T Consensus 17 ~~~C~~Cg~~~~~~Cs~C~~~~YCs~~CQ~~~W~~ 51 (64)
T 2odd_A 17 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK 51 (64)
T ss_dssp SSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 87775689521084899999821699999999999
No 27
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=20.74 E-value=38 Score=15.99 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=21.5
Q ss_pred CCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHH
Q ss_conf 6304456888787778-----868761077744335
Q gi|254780469|r 7 RSLKSICPECRKGSMV-----EFYPFCSTQCRSIDL 37 (63)
Q Consensus 7 k~~k~~CP~C~k~~~~-----~~rPFCS~RC~~iDL 37 (63)
......|-.|++++.. ..--+||+.|+..|-
T Consensus 6 ~~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~dW 41 (52)
T 2jw6_A 6 ERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDW 41 (52)
T ss_dssp -----CCSSSSSSCSEECTTTCSSEESSHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHH
T ss_conf 468883778996403748999967778899999999
No 28
>2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P
Probab=20.58 E-value=28 Score=16.70 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 4568887877788
Q gi|254780469|r 11 SICPECRKGSMVE 23 (63)
Q Consensus 11 ~~CP~C~k~~~~~ 23 (63)
++||.||=-+-.+
T Consensus 24 IrCPyCGfri~~k 36 (48)
T 2waq_P 24 VRCPYCGYKIIFM 36 (48)
T ss_dssp SSCTTTCCCCEEC
T ss_pred CCCCCCCCEEEEE
T ss_conf 6446357189998
Done!