RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780469|ref|YP_003064882.1| zinc-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG
          {Escherichia coli [TaxId: 562]}
          Length = 65

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 13 CPECRK----GSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEE 58
          CP C K    G +  F PFCS +C+ IDL  W   E  I +  D    ++
Sbjct: 9  CPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDD 58


>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate
          dehydrogenase, large subunit {Desulfovibrio gigas
          [TaxId: 879]}
          Length = 812

 Score = 23.7 bits (50), Expect = 4.6
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 1  MQTSDFRSLKSICPEC 16
          ++T D +   S+C  C
Sbjct: 5  LKTVDAKQTTSVCCYC 20


>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
          coli [TaxId: 562]}
          Length = 268

 Score = 23.0 bits (48), Expect = 6.6
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 13 CPECRKGSMVEFYPFCSTQCRSIDLSR 39
          CP C +    E   +   Q    D+++
Sbjct: 4  CPLCHQPLSREKNSYICPQRHQFDMAK 30


>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 219

 Score = 22.8 bits (49), Expect = 7.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 31 QCRSIDLSRWLHGEYVIAAVEDEKSEEEVKDIL 63
          Q R   L++W   E V A +     EE+ K I+
Sbjct: 60 QKRLGQLAKWKTAEEVAALIRSLPVEEQPKQII 92


>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 253

 Score = 22.8 bits (49), Expect = 8.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 31  QCRSIDLSRWLHGEYVIAAVEDEKSEEEVKDIL 63
           Q R   L++W   E V A V     EE+ K I+
Sbjct: 68  QKRLSQLAKWKTAEEVSALVRSLPKEEQPKQII 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 237,581
Number of extensions: 8010
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 9
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)