BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780469|ref|YP_003064882.1| zinc-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780469|ref|YP_003064882.1| zinc-binding protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 63

 Score =  131 bits (330), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MQTSDFRSLKSICPECRKGSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEEVK 60
          MQTSDFRSLKSICPECRKGSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEEVK
Sbjct: 1  MQTSDFRSLKSICPECRKGSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEEVK 60

Query: 61 DIL 63
          DIL
Sbjct: 61 DIL 63


>gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 111

 Score = 23.5 bits (49), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 7  RSLKSICPECRKGSMVEFYPFCSTQCRSIDLSRWL 41
          +S K I PE  KG +V F  +  T+ +  D   +L
Sbjct: 59 QSGKVIEPEVSKGDIVLFGKWSGTEIKLNDGEEYL 93


>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 23.1 bits (48), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 6/30 (20%)

Query: 14 PECRKGSMVEFYPFCSTQCRSIDLSRWLHG 43
          P+C  G +++ YP      R++D ++ LH 
Sbjct: 75 PDCDSGFILDGYP------RTVDQAKSLHA 98


>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 475

 Score = 21.9 bits (45), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 27  FCSTQCRSIDLS 38
           FC TQ RS+ LS
Sbjct: 107 FCDTQIRSLQLS 118


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.133    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,028
Number of Sequences: 1233
Number of extensions: 1011
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 63
length of database: 328,796
effective HSP length: 34
effective length of query: 29
effective length of database: 286,874
effective search space:  8319346
effective search space used:  8319346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)